BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] (354 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] gi|254040367|gb|ACT57163.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/354 (100%), Positives = 354/354 (100%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS Sbjct: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL Sbjct: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN Sbjct: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP Sbjct: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA Sbjct: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI Sbjct: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 >gi|315121857|ref|YP_004062346.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495259|gb|ADR51858.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 354 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 261/352 (74%), Positives = 312/352 (88%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSEND P+NKTE+PSSKKIEDAL++GNAP+SRE LFSS LACLIYLLFF SPGI+ +T Sbjct: 1 MSENDNPENKTESPSSKKIEDALSKGNAPVSREVYLFSSTLACLIYLLFFVSPGIHDLTY 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D + LAS TQ KL+ +SH+VFLL L S S+L+IPGLLLFM+FG+GSYLIQRIP NL Sbjct: 61 DFRMFLASVTQWKLDSVSHLVFLLVTLGFSTSKLLIPGLLLFMIFGVGSYLIQRIPSFNL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N+++PS KR+SLREGIKRIYS NNLVNF KS KI++VGT+I ISL +N+ TML+ I++N Sbjct: 121 NNIRPSLKRISLREGIKRIYSTNNLVNFTKSSFKIVIVGTLIAISLKDNHLTMLESITSN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P IL+H FFT+RK+LI+ILLFIA LT++DIGW+Y+QWYSKLKMSKQE+KDEIKQSYGNP Sbjct: 181 PQIILHHIFFTIRKILIIILLFIAILTIIDIGWTYYQWYSKLKMSKQEVKDEIKQSYGNP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+RQKSIARSRIRHKM+EATSRAT++ITNPTHYALALRY+ TEND P+++AKGQNLIA Sbjct: 241 MIKSRQKSIARSRIRHKMIEATSRATLVITNPTHYALALRYVPTENDVPIMIAKGQNLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+RKIA E NIPIFE+P LARSLF+QVPINS+IPPVFYKA+AQLI+KIY K Sbjct: 301 SKIRKIASEKNIPIFEDPLLARSLFRQVPINSSIPPVFYKAIAQLIHKIYSK 352 >gi|222147560|ref|YP_002548517.1| flagellar biosynthesis protein FlhB [Agrobacterium vitis S4] gi|221734548|gb|ACM35511.1| flagellar biosynthetic protein [Agrobacterium vitis S4] Length = 361 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 158/350 (45%), Positives = 239/350 (68%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++++ ++KTE+PS KK+ DA +GN PISREA LF++ LA IY +FF G+ ++ Sbjct: 1 MADDEDQESKTESPSEKKMRDAAEQGNLPISREAPLFATTLAFYIYFVFFMPQGVSTLYQ 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ Q + + ++ L HL S + ++ P LLLFM+FG+ Q +P L Sbjct: 61 TLRDLMEKPDQWIIGTGTDVISLFVHLGWSMAAMLGPALLLFMLFGLTQSFAQHLPSFVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P +R+SL GI R++S+ V F KS KII+V I+ +S+ YF LD + ++ Sbjct: 121 DRITPKMERLSLIGGIGRMFSVMGFVEFGKSLFKIIVVAIIMFVSMRGQYFGTLDAMLSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I V+++LI++L LTV+D+GW + WY KL+M++QE+KDE KQS G+P Sbjct: 181 PQIIFVKLSDIVQEMLIIVLFATGLLTVMDLGWQRYNWYQKLRMTRQEVKDEHKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQ+S R + R +MM RAT+IITNPTH+A+ALRY++TE +AP+++AKGQ+LIA Sbjct: 241 VVKARQRSAQRDQARRRMMNNVPRATMIITNPTHFAVALRYVRTEMEAPIVLAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA E+NIPIFE+P LARS+F QV ++S IPP+FYKAVA+++ ++Y Sbjct: 301 LKIREIAEENNIPIFEDPPLARSMFAQVSVDSVIPPIFYKAVAEIVQRLY 350 >gi|222084854|ref|YP_002543383.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] gi|221722302|gb|ACM25458.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] Length = 358 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 159/352 (45%), Positives = 238/352 (67%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D D+KTE P+ KK+ D + +GN P SREA++F+S+LA +IY+ FF + + Sbjct: 1 MADEDK-DSKTEKPTEKKLRDTMEKGNVPHSREATIFASMLATVIYVTFFLPERMGRMGE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q KLE + L T + LV+P ++LF +FGIGS + Q +P L Sbjct: 60 VLRDLFEKPDQWKLETGPDALSLFTRIGWEVGNLVLPAIVLFFIFGIGSSMFQNLPTPVL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R+S G RI+S + LV F KS KI++V I+ L +F +D ++++ Sbjct: 120 DRIQPKFSRISPVSGWNRIFSTSGLVEFGKSLAKIVVVSIIMFFVLRGQFFHAIDSLASD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I V+++L+++LL A + + D+ WS H W+ +LKM+KQEIKDE KQS G+P Sbjct: 180 PQTIFVRLSTIVQRILMIVLLATAVVGIADVLWSRHHWFDQLKMTKQEIKDEFKQSQGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 240 IVKSRQRSVARDRARRRMIKQVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA + IP+FE+P LARS+F QV ++S IP VFYKAVA+LI++IY + Sbjct: 300 LKIREIAEANGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRIYAQ 351 >gi|241203095|ref|YP_002974191.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856985|gb|ACS54652.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 359 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 152/347 (43%), Positives = 236/347 (68%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 3 DDDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPDSVGRMSETLR 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E ++ L L +++ LV P +LFM+FG+ S + Q +P L L + Sbjct: 63 DIFEQPDQWKIETGPDVLALFVRLGWASAALVAPAFILFMVFGVASSVFQNLPTLVLERI 122 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ LV F KS K+++VG I+ L YF +D + ++P + Sbjct: 123 RPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 182 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K Sbjct: 183 ILVRLMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 242 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 243 SRQRSLMRDRARRRMIADVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 302 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y Sbjct: 303 REIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 349 >gi|15964403|ref|NP_384756.1| flagellar biosynthesis protein FlhB [Sinorhizobium meliloti 1021] gi|307311545|ref|ZP_07591186.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C] gi|307318900|ref|ZP_07598331.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83] gi|17380369|sp|O54243|FLHB_RHIME RecName: Full=Flagellar biosynthetic protein flhB gi|15073580|emb|CAC45222.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium meliloti 1021] gi|306895314|gb|EFN26069.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83] gi|306899562|gb|EFN30191.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C] Length = 360 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 156/350 (44%), Positives = 243/350 (69%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+KTEAPS KKI DA +GN P SRE + F+S LA I+++FF S G ++ Sbjct: 1 MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +L+ + V L++H+ L + LV+P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVFILLILFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G KRIY + LV F KS KII+V ++ + L +YF LD + ++ Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I +++++I++L ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P Sbjct: 181 PVTIFTTMISDLKQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|15887910|ref|NP_353591.1| flagellar biosynthesis protein FlhB [Agrobacterium tumefaciens str. C58] gi|2459702|gb|AAB71778.1| FlhB [Agrobacterium tumefaciens] gi|15155504|gb|AAK86376.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58] Length = 360 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 154/352 (43%), Positives = 236/352 (67%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G + Sbjct: 1 MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPEGAGRLGV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q L + LL L S + L++P +++F++FG+ S +Q +P L Sbjct: 61 TLKDLFGQPEQWNLSTRPDALALLYFLGTSVAYLLMPAMIMFIVFGLASSFLQNLPSPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P + R+S +G RIYS V F KS KI++V I+ +L ++++++D + ++ Sbjct: 121 ERVRPQWSRISPAKGFTRIYSKQGFVEFAKSVFKIMIVSIIMFFALRGDFYSLIDLMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I V+K++++ILL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P Sbjct: 181 PQVIFVRVVEIVKKMMVVILLSTALLAAVDVLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+RQ+SIAR R R +M+ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 241 VVKSRQRSIARDRARRRMINNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA E+NIP+FE+P LARS+F QV ++S IPPVFYKAVA+L++++Y + Sbjct: 301 LKIRQIAEENNIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELVHRVYAR 352 >gi|2916784|emb|CAA11951.1| flhB protein [Sinorhizobium meliloti] Length = 360 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 156/350 (44%), Positives = 243/350 (69%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+KTEAPS KKI DA +GN P SRE + F+S LA I+++FF S G ++ Sbjct: 1 MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +L+ + V L++H+ L + LV+P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVSILLILFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G KRIY + LV F KS KII+V ++ + L +YF LD + ++ Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I +++++I++L ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P Sbjct: 181 PVTIFTTMISDLQQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|150395473|ref|YP_001325940.1| flagellar biosynthesis protein FlhB [Sinorhizobium medicae WSM419] gi|150026988|gb|ABR59105.1| flagellar biosynthetic protein FlhB [Sinorhizobium medicae WSM419] Length = 360 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 155/350 (44%), Positives = 245/350 (70%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ D+KTEAPS KKI DA ++GN P SRE + F+S LA I+++FF + G +V Sbjct: 1 MADDQDKDSKTEAPSEKKISDATDKGNVPFSREVTAFASTLAIYIFVVFFLADGAANVAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +L+ + V L++H+ L ++ L++P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKSATLLMPIFILLILFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G KRIY + LV F KS K+I+V ++ + L +YF LD + ++ Sbjct: 121 DRIQPKWNRVSPVAGFKRIYGVPGLVEFGKSLFKVIVVSIVVVLVLWNDYFATLDMMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I +++++I++L ATL ++D+ W+ H WY++LKM+KQE+KDE+KQS G+P Sbjct: 181 PVMIFTTMTSDLKQIIIVVLFATATLAIVDLFWTRHHWYTELKMTKQEVKDELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A Sbjct: 241 IVKSRLRSLQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|116250471|ref|YP_766309.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv. viciae 3841] gi|115255119|emb|CAK06193.1| putative flagellar biosynthetic protein [Rhizobium leguminosarum bv. viciae 3841] Length = 365 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 151/347 (43%), Positives = 235/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + +T L Sbjct: 9 DDDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPESVGRMTEMLR 68 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E ++ L + +++ LV P +LFM+FG+ S + Q +P L + Sbjct: 69 DIFEQPDQWKIETGPDVLALFVRIGWASAALVAPAFILFMVFGVASSVFQNLPTPVLERI 128 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ LV F KS K+++VG I+ L YF +D + ++P + Sbjct: 129 RPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 188 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K Sbjct: 189 ILVRMMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 248 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 249 SRQRSLMRDRARRRMIANVDRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 308 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y Sbjct: 309 REIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 355 >gi|227820846|ref|YP_002824816.1| flagellar biosynthesis protein FlhB [Sinorhizobium fredii NGR234] gi|227339845|gb|ACP24063.1| flagellar biosynthetic protein FlhB [Sinorhizobium fredii NGR234] Length = 360 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 158/350 (45%), Positives = 242/350 (69%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ D+KTEAPS KK+ DA +GN P SRE + F+S LA I+++FF S G S Sbjct: 1 MSDDQDKDSKTEAPSEKKLSDAAEKGNVPFSREVTAFASTLAVYIFIVFFLSDGAASTAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +LE + V L++H+ L ++ LV+P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLETATDAVGLISHVVLKSAGLVLPVFVLLIIFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P+ RVS G KRI+ + LV F KS KII+V I+ + L +YF LD + ++ Sbjct: 121 DRIMPNMNRVSPIAGFKRIFGVPGLVEFAKSLFKIIVVSIIVVLVLWNDYFATLDLMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I +++++ ++LL A L ++D+ W+ H WYS+LKM+KQE+K+E+KQS G+P Sbjct: 181 PVTIFATMISDLKQIVTVVLLATAVLAIVDLFWTRHHWYSELKMTKQEVKEELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT++I NPTHYA+ALRY++ E+DAPV+VA GQ+L+A Sbjct: 241 IVKSRLRSMQRDRARKRMIASVPRATLVIANPTHYAVALRYVREESDAPVVVAMGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|163758003|ref|ZP_02165091.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43] gi|162284292|gb|EDQ34575.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43] Length = 363 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 152/353 (43%), Positives = 233/353 (66%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + D+KTE P+ KK+ DA+++GN P SRE +F+SIL L++L+FF T+ Sbjct: 1 MAEGEDKDSKTEEPTEKKLRDAIDKGNIPFSREVPIFASILGTLLFLVFFLPSAASRFTN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + +LE V L L + A +++P L M FGI + ++Q +P L Sbjct: 61 SLRDLFEQSDDWRLETGGDAVALFQSLFIEAGVVMVPAFALLMGFGIAASVLQNMPSPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P +R+S+ +G RIY I +V F KS KII V ++I++ + +F LDF+ + Sbjct: 121 DRIQPKLERISIVKGFGRIYGIKGMVEFAKSMFKIIAVSLFVSIAMKDEFFRSLDFMFMD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ KV+ ++L+ A L VLD+ W+ + W++ KMSKQ+IKDE+KQS G+P Sbjct: 181 PTLVVPDMARIAAKVVAVVLISTALLAVLDVLWTRYSWHNDQKMSKQDIKDELKQSDGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K RQ+S+AR R R +M+ RAT++I NPTH+A+ALRY++ E APV++AKGQ+LIA Sbjct: 241 IVKARQRSLARDRARRRMIAEVPRATMVIANPTHFAVALRYVREEGGAPVVIAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A H IP+FE+P LARS+F QV +++ IP VFYKAVA+L+++IY K Sbjct: 301 LKIREVAEAHGIPVFEDPPLARSMFAQVSVDNFIPAVFYKAVAELVHRIYTDK 353 >gi|86356301|ref|YP_468193.1| flagellar biosynthesis protein FlhB [Rhizobium etli CFN 42] gi|86280403|gb|ABC89466.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN 42] Length = 373 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 150/347 (43%), Positives = 235/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E ++ L L + + L+ P +LFM+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDVLSLFVRLGWAIAALLAPAFILFMVFGIASSVFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ L+ F KS K+++VG I+ L YF+ +D + ++P + Sbjct: 137 RPQASRISPAKGWGRLFSLPGLIEFGKSLFKVVVVGLILFFVLRSEYFSSIDAMFSDPQT 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D+ W+ H W+++LKM++ EIK+E KQ+ G+P +K Sbjct: 197 ILVRISTAMRKIVIVVLIATAIVAIADVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363 >gi|327193023|gb|EGE59935.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CNPAF512] Length = 373 Score = 325 bits (834), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 149/347 (42%), Positives = 233/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ L+ F KS K+++VG I+ L YF +D + ++P + Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D W+ H W+++LKM++ E+K+E KQ+ G+P +K Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363 >gi|209547917|ref|YP_002279834.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533673|gb|ACI53608.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 359 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 149/347 (42%), Positives = 235/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + + L Sbjct: 3 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGHMAETLR 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E ++ L L + + L+ P +LFM+FGI S + Q +P L + Sbjct: 63 DIFDQPDQWKIETGPDVLSLFVKLGWAIAALLAPAFILFMVFGIASSIFQNLPTPVLERI 122 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G +R++S+ L+ F KS K+++VG I+ L YF+ +D + ++P + Sbjct: 123 RPQASRISPVKGWERLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSDPQT 182 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + ++D+ W+ H W+++LKM++ EIK+E KQ+ G+P +K Sbjct: 183 ILVRISTAMRKIIIVVLIATAIVAIVDVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVK 242 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 243 GRQRSLMRDRARRRMISNVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 302 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV +++ IP VFYKAVA+LI+++Y Sbjct: 303 REIAEKNGIPVFEDPPLARSMFAQVSVDTVIPSVFYKAVAELIHRVY 349 >gi|190890352|ref|YP_001976894.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|190695631|gb|ACE89716.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] Length = 373 Score = 325 bits (832), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 149/347 (42%), Positives = 233/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ L+ F KS K+++VG I+ L YF +D + ++P + Sbjct: 137 RPQASRISPVKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D W+ H W+++LKM++ E+K+E KQ+ G+P +K Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363 >gi|325291951|ref|YP_004277815.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3] gi|325059804|gb|ADY63495.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3] Length = 360 Score = 325 bits (832), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 152/353 (43%), Positives = 233/353 (66%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G + Sbjct: 1 MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q L + LL L S + L++P +++F++FG+ S Q +P L Sbjct: 61 TLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P + R+S +G RIYS V F KS KI++V I+ +SL ++++++D + ++ Sbjct: 121 ERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I +K++++IL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P Sbjct: 181 PQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 241 VVKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y K Sbjct: 301 LKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 353 >gi|45479286|gb|AAS66688.1| FlhB [Agrobacterium sp. H13-3] Length = 374 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 151/353 (42%), Positives = 233/353 (66%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 ++++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G + Sbjct: 15 LADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGV 74 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q L + LL L S + L++P +++F++FG+ S Q +P L Sbjct: 75 TLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVL 134 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P + R+S +G RIYS V F KS KI++V I+ +SL ++++++D + ++ Sbjct: 135 ERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSD 194 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I +K++++IL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P Sbjct: 195 PQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 254 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 255 VVKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 314 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y K Sbjct: 315 LKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 367 >gi|218663130|ref|ZP_03519060.1| flagellar biosynthesis protein FlhB [Rhizobium etli IE4771] Length = 360 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 136/351 (38%), Positives = 215/351 (61%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 3 DDDKDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGRMSETLR 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----VLN 119 + Q K+E ++ L L + + L+ P +L M+FG + I +P Sbjct: 63 DIFEQPDQWKIETGPDVLALFVRLGWAIAALLAPAFILLMVFG---HRIVDLPEPADACA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 N + + + K+++VG I+ L YF +D + + Sbjct: 120 GNASDRRLRASRRPRAGHGSSACLASSSSESPLFKVVVVGVILFFVLRSEYFGSIDAMFS 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P +IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+ Sbjct: 180 DPQTILVRMMTAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LI Sbjct: 240 PFVKGRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 300 ALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 350 >gi|319781693|ref|YP_004141169.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167581|gb|ADV11119.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 360 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 219/353 (62%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+KTE + KKI D + +G P SRE +LF+S +A L++ +F+ I + Sbjct: 1 MADAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALFASFVAILVFTVFYAKDAIIDLGM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + L ++ + ++ L + L R V+ ++L + G+G+ + Q +P Sbjct: 61 FLSMFLEKPEAWPMDTETDVIALYKIVLLEVGRAVLSLMVLLTVAGVGASVFQNMPQFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P R+S+ +G R++ I V F+KS K+ +++ +L+E++ +L + N Sbjct: 121 ERVRPQLSRISIAKGWNRLFGIQGWVEFLKSLGKVGFAIVVLSFTLSEDHRKLLAGMITN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L+ I+ + + +DI WS W L+MSKQE+KDE KQS G+P Sbjct: 181 PIAFGLVIRGIAVDILVAIVFVMGLIAAVDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP+++AKGQ+L+A Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPMVLAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNIP+FE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK Sbjct: 301 LKIREIAREHNIPVFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353 >gi|260466631|ref|ZP_05812819.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum WSM2075] gi|259029637|gb|EEW30925.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum WSM2075] Length = 360 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 133/353 (37%), Positives = 220/353 (62%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+KTE + KKI D + +G P SRE +L +S +A L++ +F+ I + Sbjct: 1 MSDAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALLASFVAILVFTVFYAKDAIIDLGM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++ + ++ L + L R ++ L+L + GIG+ ++Q +P + Sbjct: 61 FLATFLEKPEAWPMDTETDVIALYKLVMLEVGRALVSLLVLLSVAGIGASVLQNMPQIVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R+S+ +G R++ + V F+KS K+ +++ +L+E++ +L + N Sbjct: 121 ERIRPQFSRISIVKGWNRMFGVQGWVEFLKSLGKVGFAIAVLSFTLSEDHRKLLAGMITN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L+ I+ + + +DI WS W L+MSKQE+KDE KQS G+P Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNIPIFE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK Sbjct: 301 LKIREIAREHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353 >gi|13472564|ref|NP_104131.1| flagellar biosynthesis protein FlhB [Mesorhizobium loti MAFF303099] gi|14023310|dbj|BAB49917.1| flagellar biosynthetic protein; FlhB [Mesorhizobium loti MAFF303099] Length = 360 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 130/353 (36%), Positives = 218/353 (61%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+KTE + KK+ D + +G P SRE ++ +S +A L++ +F+ + ++ Sbjct: 1 MSDAADKDSKTEEATEKKVRDTIEQGKLPHSRETAILASFVAILVFTVFYAKDAVINLGM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + L + + ++ L + L R V+ L+L + GIG+ ++Q +P Sbjct: 61 FLSMFLEKPEAWPMNTETDVIDLYKIVMLEVGRAVVSLLVLLTVAGIGASVLQNMPQFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S+ +G R++ V F+KS K+ ++T +L+E++ +L + N Sbjct: 121 ERIRPQLSRISITKGWNRMFGAQGWVEFLKSLAKVGFAIAVLTFTLSEDHSKLLAGMITN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L+ I+ + + +DI WS W L+M+KQE+KDE KQS G+P Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMTKQEVKDEFKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNIPIFE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK Sbjct: 301 LKIREIAKEHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353 >gi|217976220|ref|YP_002360367.1| flagellar biosynthesis protein FlhB [Methylocella silvestris BL2] gi|217501596|gb|ACK49005.1| type III secretion exporter [Methylocella silvestris BL2] Length = 359 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 217/349 (62%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +++ +++TE + KKI D L GNAP SREA+LF+S+ A LI FF I S+T LH Sbjct: 3 DESTESRTEEATEKKIGDELERGNAPFSREAALFASVSAMLIIGAFFAQQCIASMTLLLH 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LL A +L + + V L+ +S +++I ++F G+ + +Q P L ++ + Sbjct: 63 HLLDDAGGVRLRNGNDAVALMKLVSWDVFKVLIAPFVVFAAGGVLASALQNAPRLVVDRI 122 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P+FKR+SL EG +R++ F KS VK+ + I+ L +++ ++ P + Sbjct: 123 LPNFKRISLTEGWQRLHGARGYAEFSKSVVKLASISVIVLAVLQSQQNKLVNAVALEPEA 182 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + K++ ++ + A L +D+ WS W ++MS+QEIKDE+KQS G+P+ K Sbjct: 183 LPELILSVAMKLMSVVCIVTAALLAIDLVWSRFHWRRDMRMSRQEIKDEMKQSDGDPVRK 242 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R +S+A+ R+R M+ A +AT++I NPTHYA+ALRY++ E AP++++KGQ+LIA K+ Sbjct: 243 ARLRSLAQDRVRKNMIAAVPKATLVIANPTHYAIALRYVKEEGGAPMVISKGQDLIALKI 302 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 R++A H+IPI E+ LARS++ V ++ IPP FYKAVA+LI+ +Y K Sbjct: 303 RELAERHSIPIIEDKLLARSMYDSVEVDHPIPPQFYKAVAELIHYLYSK 351 >gi|115523175|ref|YP_780086.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisA53] gi|115517122|gb|ABJ05106.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisA53] Length = 358 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/351 (34%), Positives = 218/351 (62%), Gaps = 2/351 (0%) Query: 4 NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +DAP+ +KTE P+ KK+ D++ +G P+SRE ++FSS++A L+ L F + ++T Sbjct: 2 SDAPEKESKTEEPTEKKVRDSVEKGQIPVSREVAIFSSMIALLLILSFLTGDKLTALTKA 61 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L L+ + +++ + + L+T + +S++R V+P +++ + G+ S +Q +P + + Sbjct: 62 LAGLIDDPSGVRIKTGADAIELITAIGVSSARFVLPIVVVLSLAGLASSFLQNVPRIVAD 121 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P R+S+ +G +RI+ V F KS K I + ++ I L ++ + +P Sbjct: 122 RIEPKLSRISIAKGWERIFGAQGRVEFAKSVFKFIAISIVVAIVLKAEEAATVNALFGDP 181 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 ++ T +++ I + L LD+ W+ W L+M+KQE+KDE KQ+ G+PI Sbjct: 182 TAVPELVLTTAMQLVSAISIATIVLVALDLVWARFHWRQDLRMTKQELKDEFKQAEGDPI 241 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K+R +SIAR R R+ M+ A RAT++I NPTHYA+AL+Y E+ AP ++AKGQ+LIA Sbjct: 242 VKSRMRSIARDRARNAMLAAVPRATLVIANPTHYAIALKYQHGEDPAPTVLAKGQDLIAL 301 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA ++N+P+ E+ LAR+++ I+ IP F++ VA++IY ++ + Sbjct: 302 KIREIAEQNNVPVVEDRMLARAMYDAAQIDRVIPAEFFRPVAEIIYFLHSR 352 >gi|110632668|ref|YP_672876.1| flagellar biosynthesis protein FlhB [Mesorhizobium sp. BNC1] gi|110283652|gb|ABG61711.1| flagellar biosynthetic protein FlhB [Chelativorans sp. BNC1] Length = 363 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 135/350 (38%), Positives = 217/350 (62%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE + KKI D + +G P SREA + +S LA L++++FF + Sbjct: 1 MAEGADKESKTEEATEKKIRDTVEKGQLPFSREAPVLASFLAILVFVVFFAEDRAVQLAG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + A L+ + + + + L ++V +LL + G+ + ++Q P L Sbjct: 61 FLAIFIERADGWSLKTQTDAIAIYRIVFLQIGKVVGIVMLLLVAAGVSASILQNTPRFVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P RVSL +G R++ LV F KS K+++VG ++ +L +L + + Sbjct: 121 ERIQPKLSRVSLAKGWSRLFGTRGLVEFAKSVGKMLVVGALVAFTLRHADTRLLSGMVTH 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + V +LI I LF+ + V D+ WS W L+MS+QE+KDE KQ+ G+P Sbjct: 181 PVAFTVTIRDLVINILIAIALFMTLVAVADLVWSRFSWRQDLRMSRQEVKDEQKQTDGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ R +S+AR R R +MM A +AT++I NPTHYA+ALRY + ++ APV+VAKGQ+L+A Sbjct: 241 LMRARLRSVARDRARRRMMSAIPQATLVIANPTHYAIALRYQRDKDAAPVVVAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R++A EHNIP+FEEP+LARS++KQV ++S IPP FYKAVA+L+ ++Y Sbjct: 301 LRIRELAREHNIPVFEEPALARSMYKQVSVDSLIPPQFYKAVAELVRRVY 350 >gi|254505032|ref|ZP_05117183.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] gi|222441103|gb|EEE47782.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] Length = 358 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 8/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+KTE P+ KKI+DA+ +GN P+S+EA + + ++ L+ F + G+ + S Sbjct: 1 MSEEADKDSKTEEPTEKKIQDAIEKGNTPVSKEAPVLAMLIGALLIGGFAITSGVRQLVS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ LL + L + + + L LS+ + P + + + G+ S +Q P + Sbjct: 61 DMAHLLDVSGGLDLGNSADALMLSHSLSIKVGLFLAPIIAILSVSGLASAFLQNKPSIVP 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI--- 177 N +KP ++SL++G RI+ V F+K+ K V I+ + +++ + Sbjct: 121 NRIKPELSKLSLKKGWSRIFGAQGFVEFLKAVFKFSTVSAIVYAQFRAHESDLINAMFTD 180 Query: 178 -SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 SA P IL + + V I+ +L L +DI WS W L+M+KQE+KDE KQ Sbjct: 181 PSALPEMILQISLRLISGVCIVTIL----LVTVDILWSRSHWRKNLRMTKQEVKDEHKQM 236 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+PI+K RQ+S+AR R R++MM A +AT+++ NPTH+A+ALRY +N APV+VAKGQ Sbjct: 237 EGDPIVKARQRSLARDRARNRMMSAVPQATLVVANPTHFAVALRYDGEKNPAPVVVAKGQ 296 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +LIA K+R+IA ++IP+ E+ LARSL+ + IPP FY+AVA++I +Y +K Sbjct: 297 DLIALKIREIAETNDIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICFVYSRK 353 >gi|90422606|ref|YP_530976.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB18] gi|90104620|gb|ABD86657.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisB18] Length = 358 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 215/353 (60%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++KTE P+ KKI D++ +G P+SREAS+FSS++A L+ L F + ++T+ Sbjct: 1 MSEGPDKESKTEEPTEKKIRDSVEKGKIPVSREASIFSSMIALLLILSFLAVDNVRNLTA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++ + ++ + L + SA+ LV+P +++ + G+ + ++Q +P++ Sbjct: 61 TLARMIDDPSGIRIRTAADATEFLVAVGASAAGLVLPIVIVLAVAGVLASVLQNVPLIVF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+S+ +G RI+ V F KS K I + ++TI L T ++ + ++ Sbjct: 121 ERIAPDASRISIAKGWGRIFGGQGRVEFAKSVFKFIAISLVVTIVLRAEEATAVNALFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ +++ I + L LD+ W+ W L+M+KQE+KDE +Q+ G+P Sbjct: 181 PTAVPELILAAAMRLVSAISIATIVLVALDLLWARFHWRRDLRMTKQELKDEFRQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +SIAR R R +M+ A RAT++I NPTHYA+AL+Y E+ AP ++AKGQ+LIA Sbjct: 241 IVKSRLRSIARDRARKRMLAAVPRATLVIANPTHYAIALKYQHGEDAAPTVLAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +N+P+ E+ LARS++ I+ IP F++ VA++IY ++ ++ Sbjct: 301 LKIREIAERNNVPVVEDRMLARSMYDAAEIDRVIPAEFFRPVAEIIYFLHSRR 353 >gi|118589950|ref|ZP_01547354.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] gi|118437447|gb|EAV44084.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] Length = 357 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 142/358 (39%), Positives = 210/358 (58%), Gaps = 11/358 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D D+KTE P+ KKI DA+ +GN P+SREA + ++ +A L+ F + + Sbjct: 1 MSEEDK-DSKTEEPTEKKISDAIEKGNTPVSREAPVLATFIATLLIGSFVITSASRQLIQ 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L LL + L + S LLTH +S+ + P + L G+ S +Q P + Sbjct: 60 MLTHLLDLSGGVDLGN-SADALLLTHAVSIEVLVFLAPIVALLAASGLASAFLQNTPSIV 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-- 177 + +KP ++SL +G RI+ LV F+K+ K V I+ N +++ + Sbjct: 119 FHRIKPDASKLSLAKGWSRIFGAQGLVEFLKAVFKFSTVSAIVYGQFRANEAELINAMFT 178 Query: 178 --SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 SA P +IL + + V I+ +L L +DI WS W L+MSKQEIKDE KQ Sbjct: 179 DPSALPEAILQISMKLIAGVCIVTIL----LVTVDILWSRSHWRKNLRMSKQEIKDEHKQ 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+PI+K RQ+S+AR R R++MM A +AT+I+ NPTH+A+ALRY +N APV+VAKG Sbjct: 235 MEGDPIVKARQRSLARDRARNRMMSAVPQATLIVANPTHFAVALRYDGDQNPAPVVVAKG 294 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 Q+LIA K+R+IA +NIP+ E+ LARSL+ + IPP FY+AVA++I +Y ++ Sbjct: 295 QDLIALKIREIAEANNIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICYVYSRQ 352 >gi|90418395|ref|ZP_01226307.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans SI85-9A1] gi|90338067|gb|EAS51718.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans SI85-9A1] Length = 362 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 207/352 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+++ +KTE P+ KKI DA+ +GN P+SREA + +S+LA + ++ G+ + Sbjct: 1 MSDSEDKSSKTEFPTEKKISDAVEKGNLPVSREAPILASLLAIMAFIALQAREGVQRLLL 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + Q L+ + + +L L+ A ++P LF+ G+ S ++Q P +N+ Sbjct: 61 SLQTTFENPLQWDLDTSADALHVLHMLAREAVWFILPAAGLFVAGGVISSVLQNPPQINI 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P + VS G RI+ + L F K+ K I +G ++++ L ++ TM+ + A+ Sbjct: 121 ERIRPKWSNVSPASGFTRIFGLRGLTEFGKAVFKFITIGVVVSMLLVSSFPTMMQAMFAD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + K+L I + L D+ + W L MSKQEIKDE KQ+ G+P Sbjct: 181 PVLVPELILQMAMKLLSGISIATIVLVAADLAMTRFHWRRDLMMSKQEIKDENKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK RQ+ I R R+R +MM AT++I NPTHYA+ALRY + E AP++VAKG +L+A Sbjct: 241 QIKARQRQIGRDRVRRRMMADVPLATLVIANPTHYAIALRYNREEGGAPMVVAKGADLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA +++P+ E+ LARS++ V I+ IPP F+KA+A++IY ++ + Sbjct: 301 LKIREIAEANDVPVIEDKLLARSMYDHVEIDQMIPPKFFKAIAEIIYFLHSR 352 >gi|306846305|ref|ZP_07478866.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1] gi|306273300|gb|EFM55169.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1] Length = 356 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 208/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPIFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PSALPEFLRKNVVRLLVANVLTIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R RH+M+ A AT+I+ NPTH+++ALRY E+ APV++AKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARHRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVIAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAVSHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|256158147|ref|ZP_05456063.1| flagellar biosynthesis protein FlhB [Brucella ceti M490/95/1] gi|256252902|ref|ZP_05458438.1| flagellar biosynthesis protein FlhB [Brucella ceti B1/94] gi|261219990|ref|ZP_05934271.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94] gi|265996665|ref|ZP_06109222.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1] gi|260918574|gb|EEX85227.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94] gi|262550962|gb|EEZ07123.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1] Length = 356 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 125/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY EN APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNENAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|254695264|ref|ZP_05157092.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 3 str. Tulya] gi|261215629|ref|ZP_05929910.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str. Tulya] gi|260917236|gb|EEX84097.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str. Tulya] Length = 356 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 208/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ + L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRSEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|254711986|ref|ZP_05173797.1| flagellar biosynthesis protein FlhB [Brucella ceti M644/93/1] gi|254715056|ref|ZP_05176867.1| flagellar biosynthesis protein FlhB [Brucella ceti M13/05/1] gi|261216763|ref|ZP_05931044.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1] gi|261319630|ref|ZP_05958827.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1] gi|260921852|gb|EEX88420.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1] gi|261292320|gb|EEX95816.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1] Length = 356 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVGFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|17989459|ref|NP_542092.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str. 16M] gi|148558113|ref|YP_001257188.1| flagellar biosynthesis protein FlhB [Brucella ovis ATCC 25840] gi|163844317|ref|YP_001621972.1| flagellar biosynthesis protein FlhB [Brucella suis ATCC 23445] gi|225628598|ref|ZP_03786632.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo] gi|225685983|ref|YP_002733955.1| flagellar biosynthesis protein FlhB [Brucella melitensis ATCC 23457] gi|254699432|ref|ZP_05161260.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 5 str. 513] gi|254706322|ref|ZP_05168150.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis M163/99/10] gi|254711387|ref|ZP_05173198.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis B2/94] gi|256014911|ref|YP_003104920.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|256029983|ref|ZP_05443597.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis M292/94/1] gi|256043043|ref|ZP_05445988.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str. Rev.1] gi|256059636|ref|ZP_05449833.1| flagellar biosynthesis protein FlhB [Brucella neotomae 5K33] gi|256111971|ref|ZP_05452922.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 3 str. Ether] gi|256262893|ref|ZP_05465425.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9] gi|260564276|ref|ZP_05834761.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M] gi|261313768|ref|ZP_05952965.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M163/99/10] gi|261318993|ref|ZP_05958190.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94] gi|261323606|ref|ZP_05962803.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33] gi|261749883|ref|ZP_05993592.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513] gi|265987004|ref|ZP_06099561.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M292/94/1] gi|265989482|ref|ZP_06102039.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str. Rev.1] gi|265993419|ref|ZP_06105976.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str. Ether] gi|17985338|gb|AAL54356.1| flagellar biosynthetic protein flhb [Brucella melitensis bv. 1 str. 16M] gi|148369398|gb|ABQ62270.1| flagellar biosynthetic protein FlhB [Brucella ovis ATCC 25840] gi|163675040|gb|ABY39150.1| flagellar biosynthetic protein FlhB [Brucella suis ATCC 23445] gi|225616444|gb|EEH13492.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo] gi|225642088|gb|ACO02001.1| flagellar biosynthetic protein FlhB [Brucella melitensis ATCC 23457] gi|255997571|gb|ACU49258.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|260151919|gb|EEW87012.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M] gi|261298216|gb|EEY01713.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94] gi|261299586|gb|EEY03083.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33] gi|261302794|gb|EEY06291.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M163/99/10] gi|261739636|gb|EEY27562.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513] gi|262764289|gb|EEZ10321.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str. Ether] gi|263000151|gb|EEZ12841.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str. Rev.1] gi|263092730|gb|EEZ16939.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9] gi|264659201|gb|EEZ29462.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M292/94/1] gi|326410307|gb|ADZ67371.1| flagellar biosynthesis protein FlhB [Brucella melitensis M28] gi|326553600|gb|ADZ88239.1| flagellar biosynthesis protein FlhB [Brucella melitensis M5-90] Length = 356 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|256256624|ref|ZP_05462160.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 9 str. C68] gi|260882866|ref|ZP_05894480.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str. C68] gi|297249980|ref|ZP_06933681.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str. B3196] gi|260872394|gb|EEX79463.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str. C68] gi|297173849|gb|EFH33213.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str. B3196] Length = 356 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|294853145|ref|ZP_06793817.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026] gi|294818800|gb|EFG35800.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026] Length = 356 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIADFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|114706765|ref|ZP_01439665.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506] gi|114537713|gb|EAU40837.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506] Length = 362 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 203/353 (57%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ KTE P+ KKI D + +GN P SREA + +S LA +++ Y + + Sbjct: 1 MAESEDRSQKTEQPTEKKIRDTIEKGNLPNSREAPVLASFLAISLFIALQARESGYRLLT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + Q +LE + +L+ LS A+ ++P + + GI + ++Q P +N Sbjct: 61 TLQTTFDNPLQWELETSRDALHVLSVLSTEAAIFLVPVAIFLCIGGILASVLQNPPQVNF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +S G+KRI+ L F K+ K +++G ++ + N TM+ + A+ Sbjct: 121 ERIKPKASNISPASGLKRIFGPRGLTEFAKAVFKFLMIGVVVGTLIVSNLGTMIQTMLAD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + K+L + + L DI + W + MSKQEIKDE KQ+ G+P Sbjct: 181 PVQVPELVLDLAMKLLSGVSIATIVLVAADIAMTRIHWRRDIMMSKQEIKDEHKQTDGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQK IAR R R +M+ A AT++I NPTHYA+ALRY + E AP++VAKG +L+A Sbjct: 241 MVKQRQKQIARERSRKRMIAAVPNATLVIANPTHYAIALRYKREEGGAPMVVAKGTDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A E IP+ E+ LARS++ V I+ IPP F+KAVA++IY ++ ++ Sbjct: 301 LKIREVAEEKEIPVIEDKLLARSMYDHVHIDQMIPPEFFKAVAEIIYYLHTRE 353 >gi|23499885|ref|NP_699325.1| flagellar biosynthesis protein FlhB [Brucella suis 1330] gi|161620208|ref|YP_001594094.1| flagellar biosynthesis protein FlhB [Brucella canis ATCC 23365] gi|254702550|ref|ZP_05164378.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 3 str. 686] gi|260568543|ref|ZP_05839012.1| type III secretion exporter [Brucella suis bv. 4 str. 40] gi|261753127|ref|ZP_05996836.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686] gi|23463460|gb|AAN33330.1| flagellar biosynthetic protein FlhB [Brucella suis 1330] gi|161337019|gb|ABX63323.1| flagellar biosynthetic protein FlhB [Brucella canis ATCC 23365] gi|260155208|gb|EEW90289.1| type III secretion exporter [Brucella suis bv. 4 str. 40] gi|261742880|gb|EEY30806.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686] Length = 356 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDHMIAPEFYKAVAELIRIINTRR 353 >gi|296447442|ref|ZP_06889367.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium OB3b] gi|296255062|gb|EFH02164.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium OB3b] Length = 358 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 210/353 (59%), Gaps = 12/353 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57 MSE++ D++TE S KKI DAL +G P++R+ A LF L C+ +++ P Sbjct: 1 MSESEDDDSRTEEASEKKILDALEQGKTPVARDVAVAVLFLGFLLCVSFVIETVGP---R 57 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + + ++L++ Q L + + ++ R + P L +FM+ G+ S +Q P Sbjct: 58 LALSMELMLSNVGQFSLANGADAFMQSRAVAEEIGRFLAPMLSIFMITGLLSAAMQGAPR 117 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L ++P R+S ++G+KRI+ + +V +KS KI ++G + SLT + ++D + Sbjct: 118 LVFKRIEPDLSRISPQQGLKRIFGVTGVVELVKSIAKIAVIGGAVVFSLTVDRDLIIDAM 177 Query: 178 SANPH---SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 P S+L + V+ + ++ IA + D+ WS +W ++MS+QE+K+E K Sbjct: 178 RMEPAHLPSLLLKLIIRLTSVVCIPVVLIA---LADLAWSKFKWRRDMRMSRQEMKEEHK 234 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 QS G+P++K R +S+A R R +MM +AT++I NPTHYA+ALRY++TE AP +VAK Sbjct: 235 QSEGDPLVKARMRSLALERSRKRMMAQVPQATMVIANPTHYAIALRYVRTEGGAPTVVAK 294 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 G++L+A K+R+IA H +P+ E P LAR+++ V ++ IP FY+ VA+LI+ Sbjct: 295 GKDLVALKIREIAEAHGVPVLERPELARAMYNHVEVDQMIPSEFYRPVAELIH 347 >gi|182679720|ref|YP_001833866.1| flagellar biosynthesis protein FlhB [Beijerinckia indica subsp. indica ATCC 9039] gi|182635603|gb|ACB96377.1| flagellar biosynthetic protein FlhB [Beijerinckia indica subsp. indica ATCC 9039] Length = 360 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 132/353 (37%), Positives = 210/353 (59%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D++TE P++KK++DA+ +GN PISRE +F+S+L+ LI F + + + Sbjct: 1 MAEKPDQDSQTEEPTAKKMDDAIEQGNLPISREMIIFASMLSLLIVNAFILRNSLADIVT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + ++ Q L + V L + ++P +L FM+ GI + + Q L L Sbjct: 61 LLKYVFNNSDQIPLRNQLDAVNLFQLILTETGPRLVPIILPFMIAGIAANIGQSKLRLIL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +SL G K+++ NL F+K+ +K+ V ++ + L N +++ + + Sbjct: 121 ERIQPDFGHLSLISGWKKLFGQKNLAEFLKNVIKLSAVALLLFMVLKGNQDKLINAMFLD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I ++L +I + L D+ W +QW L+MSKQEIKDE+KQ G+P Sbjct: 181 PSAIPELILSLSMRLLSVICIVTIVLATADLLWVKNQWRRDLRMSKQEIKDELKQMEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +S+A RIR M+ +AT++I NPTH+A+ALRY++ E PV+VAKG +LIA Sbjct: 241 LIKARLRSVALDRIRKSMIADVPKATVVIANPTHFAVALRYVREEGGTPVVVAKGTDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA HNIPI E+ LARSL V +N AIP FY+A+A++I+ + KK Sbjct: 301 LKIREIAEAHNIPIVEDRPLARSLHASVEVNQAIPAEFYRAIAEIIHYLNTKK 353 >gi|170741402|ref|YP_001770057.1| flagellar biosynthesis protein FlhB [Methylobacterium sp. 4-46] gi|168195676|gb|ACA17623.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46] Length = 354 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/356 (33%), Positives = 212/356 (59%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++KTE+P+ +++ +A+ +G+ P+SREAS+ +S++ LI L F ++ Sbjct: 1 MADETDQESKTESPTERRVREAIEKGDVPVSREASVLASVIGLLIALTLFVRGQAATLAR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+ LE+ LL ++++A R ++P L + + G+ + ++Q +P Sbjct: 61 EFVPLIDQPRGFTLENARDATLLLQSVAIAAGRFLLPVLAILAVCGLAASMLQNLPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G RI+ + V F+KS K + + + + L +L+ ++ + Sbjct: 121 DRIQPKWSRVSPASGWSRIFGRSGQVEFLKSLFKFLTITVVSLLLLRSERHKVLNAMTVD 180 Query: 181 PHS----ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P IL A V V I ++ +A D+ W+ +W L+MS+QE KDE KQ Sbjct: 181 PSQVPELILSMAIRLVSAVSIATIVLVAA----DLIWARLRWQRSLRMSRQETKDEHKQI 236 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P++K R +S+A+ R R +M+ A RAT++I NPTH+A+ALRY + EN AP++VAKGQ Sbjct: 237 EGDPLVKARLRSLAQDRTRKRMLAAVPRATVVIANPTHFAVALRYERDENPAPLVVAKGQ 296 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +LIA K+R+IA + IP+ E+ LARSL+ V ++ IP FY+AVAQ+++ ++ + Sbjct: 297 DLIALKIREIAEANGIPVIEDKPLARSLYDSVQVDQLIPAEFYRAVAQILFYVFAR 352 >gi|62317075|ref|YP_222928.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 1 str. 9-941] gi|83269068|ref|YP_418359.1| flagellar biosynthesis protein FlhB [Brucella melitensis biovar Abortus 2308] gi|189022341|ref|YP_001932082.1| flagellar biosynthesis protein FlhB [Brucella abortus S19] gi|237816636|ref|ZP_04595628.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A] gi|254698362|ref|ZP_05160190.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 2 str. 86/8/59] gi|254731807|ref|ZP_05190385.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 4 str. 292] gi|260544314|ref|ZP_05820135.1| type III secretion exporter [Brucella abortus NCTC 8038] gi|260759573|ref|ZP_05871921.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str. 292] gi|260762817|ref|ZP_05875149.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str. 86/8/59] gi|62197268|gb|AAX75567.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 1 str. 9-941] gi|82939342|emb|CAJ12286.1| Type III secretion exporter:Flagellar biosynthetic protein FlhB [Brucella melitensis biovar Abortus 2308] gi|189020915|gb|ACD73636.1| Type III secretion exporter [Brucella abortus S19] gi|237787449|gb|EEP61665.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A] gi|260097585|gb|EEW81459.1| type III secretion exporter [Brucella abortus NCTC 8038] gi|260669891|gb|EEX56831.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str. 292] gi|260673238|gb|EEX60059.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str. 86/8/59] Length = 356 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 206/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DA ++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDAQDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|170748134|ref|YP_001754394.1| flagellar biosynthesis protein FlhB [Methylobacterium radiotolerans JCM 2831] gi|170654656|gb|ACB23711.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans JCM 2831] Length = 353 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 214/355 (60%), Gaps = 6/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ ++KTEA S KKI DA+ EGN P SREA +F+SIL LI+L+F Sbjct: 1 MSEDR--ESKTEAASEKKISDAIAEGNTPFSREAPVFASILGLLIFLVFVARDQGLPFVQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++L +E + L+ L+L R ++P L++ + GI + + Q P + + Sbjct: 59 RLALILEQPRNFSVETRHDAMRLVHALALEMGRFLLPVLIILLAAGITASIFQNAPRVVI 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + R+S G R++S+ + F KS K +G + + L + +++ + + Sbjct: 119 DRIQPKWSRISPVTGWNRLFSLQGFIEFGKSLFKFFAIGGMSYMVLHADRHEIVNVMFVD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P + F V ++ + +AT+ ++ D+ W+ +W L+MS+QE+KDE KQ G Sbjct: 179 PVGL--PEFLLTLSVRLVSAVSVATIALVAGDLVWTRLRWQRDLRMSRQEVKDEFKQLEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K + +S+A+ R+R +MM A RAT+I+ NPTHYA+ALRY Q+ENDAP+++AKG +L Sbjct: 237 DPLVKAKMRSLAQDRLRKQMMAAVPRATMILANPTHYAIALRYDQSENDAPMVLAKGADL 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++R++A +H I + + +L R+++ V IN AIP FY+AVA L+ + +K Sbjct: 297 IALRIRELAEKHRIEVVVDKALTRAMYDHVEINQAIPAEFYRAVANLLVYVMTRK 351 >gi|254559224|ref|YP_003066319.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] gi|254266502|emb|CAX22266.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] Length = 353 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F + D Sbjct: 3 DDDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAGDFA 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L+ + Sbjct: 63 PLLDDPRGFSLESSGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVLDRI 122 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL----TENYFTMLDFISA 179 P + RVS G RI+ + V F+KS VK + V + + L T M S Sbjct: 123 TPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVDPSQ 182 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P IL A V V I ++ +A D+ W+ +W L+MS Q+IKDE KQ+ G+ Sbjct: 183 LPELILTVAIRLVSAVAIATIVIVAG----DLVWARLRWQRSLRMSHQDIKDEHKQTEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LI Sbjct: 239 PSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLI 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ + Sbjct: 299 ALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 351 >gi|218528682|ref|YP_002419498.1| flagellar biosynthesis protein FlhB [Methylobacterium chloromethanicum CM4] gi|240137212|ref|YP_002961681.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] gi|218520985|gb|ACK81570.1| flagellar biosynthetic protein FlhB [Methylobacterium chloromethanicum CM4] gi|240007178|gb|ACS38404.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] Length = 353 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F + D Sbjct: 3 DDDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAGDFA 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L+ + Sbjct: 63 PLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVLDRI 122 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL----TENYFTMLDFISA 179 P + RVS G RI+ + V F+KS VK + V + + L T M S Sbjct: 123 TPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVDPSQ 182 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P IL A V V I ++ +A D+ W+ +W L+MS Q+IKDE KQ+ G+ Sbjct: 183 LPELILTVAIRLVSAVAIATIVIVAG----DLVWARLRWQRSLRMSHQDIKDEHKQTEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LI Sbjct: 239 PSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLI 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ + Sbjct: 299 ALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 351 >gi|163850079|ref|YP_001638122.1| flagellar biosynthesis protein FlhB [Methylobacterium extorquens PA1] gi|163661684|gb|ABY29051.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens PA1] Length = 353 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F + D Sbjct: 3 DDDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAGDFA 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L+ + Sbjct: 63 PLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVLDRI 122 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL----TENYFTMLDFISA 179 P + RVS G RI+ + V F+KS VK + V + + L T M S Sbjct: 123 TPKWSRVSPMAGFTRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVDPSQ 182 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P IL A V V I ++ +A D+ W+ +W L+MS Q+IKDE KQ+ G+ Sbjct: 183 LPELILTVAIRLVSAVAIATIVIVAG----DLVWARLRWQRSLRMSHQDIKDEHKQTEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LI Sbjct: 239 PSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLI 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ + Sbjct: 299 ALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 351 >gi|188579884|ref|YP_001923329.1| flagellar biosynthesis protein FlhB [Methylobacterium populi BJ001] gi|179343382|gb|ACB78794.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001] Length = 354 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 213/354 (60%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTEA + +++ +A+ +G+ P SREA +F+S L LI L F + Sbjct: 1 MAEETDHESKTEAATERRVREAIEKGDIPFSREAPVFASTLGLLIALALFARGQASQLAR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L Sbjct: 61 DFAPLLDDPRGFALETGGDAMLLLSRVALAAGRFLLPILLILAVCSLTASLLQNLPRFVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G+ RI+ + V F+KS VK + V + + L ++ + + Sbjct: 121 DRIQPKWSRVSPMAGLSRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P S L TV + ++ + IAT+ ++ D+ W+ +W L+MS+Q+IKDE KQ+ G Sbjct: 181 P-SQLPELILTV-SIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSRQDIKDEHKQTEG 238 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+L Sbjct: 239 DPSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVLAKGQDL 298 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 IA ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ + Sbjct: 299 IALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 352 >gi|254473324|ref|ZP_05086721.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] gi|211957440|gb|EEA92643.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] Length = 353 Score = 238 bits (608), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ PD+KT+ P+ KK+ DAL +GN P+S+EAS+ +S+L L+ L F + Sbjct: 1 MSEDQDPDSKTQEPTEKKVRDALEKGNIPVSKEASVLASMLGLLLILSFIAVDKAQGLVQ 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + + + L++ ++ + P + L + FG+ S +Q P L L Sbjct: 61 FLKWFLDNPGEISFVSAAEPLQLMSAVAFELVWFLGPIVALLIFFGLASSFMQNTPRLVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P ++SL++G R++S+N + F+KS K++ V + + L L + ++ Sbjct: 121 DRIEPKLSKISLKKGFGRLFSVNGAMEFIKSLFKLVTVIVVAALVLKSQQAVALTSMYSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L I + L D+ + QW L+MS QE+KDE KQ+ G+P Sbjct: 181 PTQLPQLILSVAMTLLSGICVATIFLVGFDLVLARFQWRKNLRMSHQELKDEFKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +S+AR R R +MM + AT+++ NPTH+A+AL Y + + AP +VAKGQ++IA Sbjct: 241 LIKARLRSLARDRARKRMMSSVQDATVVVANPTHFAVALYYERDGDQAPRVVAKGQDIIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++++AY H++P+ E+ LARSL+ V I+ +IP +Y+AVA++I +Y K+ Sbjct: 301 LKIKELAYIHDVPVVEDRQLARSLYAAVEIDQSIPEEYYRAVAEIISYVYLKR 353 >gi|239834455|ref|ZP_04682783.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG 3301] gi|239822518|gb|EEQ94087.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG 3301] Length = 356 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 121/349 (34%), Positives = 200/349 (57%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL +GN P SRE + + I + LI +F P + Sbjct: 1 MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ + V F+KS K + I+ + D ++++ Sbjct: 121 ERIRPQASRISPLKGWQRIFGRSGQVEFLKSLAKFLAASVIVFVVFFSGNSLFTDAVASD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ + ++L+ +L I + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ AT+I+ NPTH+++ALRY ++ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 K+R+IA +H+IPIFE+ LAR+L+KQV ++ I P FYKAVA+LI I Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELIRVI 349 >gi|153011537|ref|YP_001372751.1| flagellar biosynthesis protein FlhB [Ochrobactrum anthropi ATCC 49188] gi|151563425|gb|ABS16922.1| flagellar biosynthetic protein FlhB [Ochrobactrum anthropi ATCC 49188] Length = 356 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL +GN P SRE + + I + LI +F P T+ Sbjct: 1 MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPA----TT 56 Query: 61 DLHVLLASATQR-------KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L V L R ED S L L+L+ ++P ++ + GI + Q Sbjct: 57 KLAVFLRELIDRPEDWLLNSAEDASR---LFGVLALAVGAALVPVFIIIPLAGIAASAFQ 113 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 P ++P R+S +G +RI+ V F+KS K + I+ + Sbjct: 114 NAPRFVGERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKFLAASVIVFVVFFNGNSLF 173 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 D ++++P ++ + ++L+ +L I + D+ WS W +L+M++QE+KDE+ Sbjct: 174 TDAVASDPSALPEFLRENMVRLLVANVLAITAIAAFDLAWSRIHWRQELRMTRQEVKDEL 233 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQS G+P++K+R +S+ R R R +M+ AT+I+ NPTH+++ALRY ++ AP++VA Sbjct: 234 KQSEGDPLVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPIVVA 293 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 KGQ+LIA K+R+IA +H+IPIFE+ LAR+L+KQV ++ I P FYKAVA+LI I Sbjct: 294 KGQDLIALKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELIRVI 349 >gi|328545474|ref|YP_004305583.1| flagellar biosynthetic protein FlhB [polymorphum gilvum SL003B-26A1] gi|326415215|gb|ADZ72278.1| Flagellar biosynthetic protein FlhB [Polymorphum gilvum SL003B-26A1] Length = 358 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 212/358 (59%), Gaps = 8/358 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + KTE P+ KKI DA+ +GN P S+EAS+ ++ LA L+ F G + S Sbjct: 1 MSDQPDKETKTEEPTEKKIRDAIEKGNTPTSKEASVLATFLAILLIGSFATVTGARRLVS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ A L + + + L L+L A R + P + + G+ + Q P + Sbjct: 61 GLSGLIDDAGGFTLGNGADALLLTHALALEAGRFLAPIVATLAVAGLAAAWFQNAPRIVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI--- 177 + +KP R+SL +G +R++ I V F K+ +K + I + L N +++ + Sbjct: 121 HRIKPDPSRLSLLKGWQRLFGIQGAVEFGKALLKFGAISLIALLLLRANEAGLVNAMFSD 180 Query: 178 -SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 SA P +IL+ A + + I ++ +A D+ W+ W L+M++QEIKDE KQ+ Sbjct: 181 PSALPETILHLAMRLLSGICIATIVLVA----FDLVWARVHWRQNLRMTRQEIKDEHKQT 236 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P++K RQ+S+AR R R++MM A +AT++I NPTH+A+ALRY + E AP++VAKGQ Sbjct: 237 EGDPLVKARQRSLARDRARNRMMAAVPKATLVIANPTHFAVALRYDRDETAAPIVVAKGQ 296 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +LIA K+R+IA +++IP+ E LARSL+ I+ IPP FY+ VA++I +Y +K+ Sbjct: 297 DLIALKIRQIAEDNDIPVIENRELARSLYASTEIDRMIPPQFYRMVAEVICYVYSRKM 354 >gi|27381988|ref|NP_773517.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA 110] gi|27355158|dbj|BAC52142.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 214/357 (59%), Gaps = 8/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE P+ KK+ D+L +G P+SREAS+F+S+ A ++ +F G+ +T Sbjct: 1 MAETTDQESKTEEPTEKKVRDSLEQGKIPVSREASIFASMAALMVIQMFLIGQGVQQLTP 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL L + LLT + L A R ++P L++ ++FG+ S L+Q P L L Sbjct: 61 TLKSLLDDPEGFPLATGADAQNLLTVVGLEALRFLVPLLVVLLVFGLASSLLQNAPNLVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI----ILVGTIITISLTENYFTMLDF 176 + P R+S G R++ LV F KS K+ ++V ++ S + + M Sbjct: 121 QRIMPDLSRISPVSGWNRLFGTQGLVEFAKSLFKLASVTVVVAFVLRSSEAKAFEAMYTD 180 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 A P IL A V + I ++ +A +D+ W+ W +L+M++QEIKDE KQ+ Sbjct: 181 PVALPEMILNIAMRIVSAICIATIVLVA----IDLAWARFHWRRELRMTRQEIKDEHKQA 236 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P++K R +S+AR R R +M+ + SRAT++I NPTH+A+ALRY + EN AP++VAKG Sbjct: 237 EGDPLVKARLRSLARDRSRQRMIASASRATLVIANPTHFAIALRYNREENPAPLVVAKGM 296 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IA K+R++A ++ IP+ E LAR+L++ V ++ IP F++ VA++IY + K+ Sbjct: 297 DVIALKIREVAEKNRIPVIENKVLARALYEAVQVDQVIPAEFFRPVAEIIYFLQSKQ 353 >gi|323139657|ref|ZP_08074699.1| type III secretion exporter [Methylocystis sp. ATCC 49242] gi|322395089|gb|EFX97648.1| type III secretion exporter [Methylocystis sp. ATCC 49242] Length = 356 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 114/347 (32%), Positives = 200/347 (57%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+D P+++TE + KKI D + +G P SR+ I A L F + Sbjct: 1 MSESDDPESRTEEATEKKIRDTVEQGKLPSSRDVGTAFGIFALLGAFSFLVDALTPRLIE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L +L+A+ + L + ++ ++L R + P LL F++ G+ + Q P Sbjct: 61 ALGLLIANVGELPLRSGADAYRYVSVVNLELGRYLGPILLGFVIAGLVASFTQGAPQFVF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + V+P R+S+ G KRI+ + +V +KS VK+I+VG + + ++ ++D + + Sbjct: 121 DRVQPDLSRISIIAGWKRIFGLAGVVELLKSVVKMIIVGGAVIFAGLSDHAALVDAMRTD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + + ++ + + L D W+ +W L+MS+QE+K+E KQ+ G+P Sbjct: 181 PSRLPGLTLRLIIHLTSVVAISVGVLAAADFVWARFKWRRDLRMSRQELKEEFKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R +S+A R R +MM + AT ++ NPTHYA+ALRY++ E AP+++AKG++LIA Sbjct: 241 LVKARMRSLAMDRSRRRMMASVPNATFVVANPTHYAIALRYVREEGGAPLVLAKGKDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 K+R+IA +N+P+FE+ LAR+++ V ++ IP FY+ VA+LI+ Sbjct: 301 LKIREIAERNNVPVFEKKELARAMYDMVEVDRMIPAEFYRPVAELIH 347 >gi|254720636|ref|ZP_05182447.1| flagellar biosynthesis protein FlhB [Brucella sp. 83/13] gi|265985680|ref|ZP_06098415.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13] gi|306837360|ref|ZP_07470239.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653] gi|264664272|gb|EEZ34533.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13] gi|306407552|gb|EFM63752.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653] Length = 356 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 205/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFAAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + I + Q P Sbjct: 61 FLRELIDHPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLASIAASAFQNAPRFVS 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIHPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFSDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PSALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|82940565|emb|CAJ44294.1| putative flagellar biosynthetic transmembrane protein FlhB [Rhizobium leguminosarum bv. viciae] Length = 213 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 98/203 (48%), Positives = 151/203 (74%) Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 F KS K+++VG I+ L YF +D + ++P +IL +RK++I++L+ A + Sbjct: 1 FGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQTILVRMMAAMRKIIIVMLIATAIVA 60 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+ RAT+ Sbjct: 61 IADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATL 120 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F Q Sbjct: 121 VIANPTHYAVALRYAREENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQ 180 Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350 V I+S IP VFYKAVA+LI+++Y Sbjct: 181 VSIDSVIPSVFYKAVAELIHRVY 203 >gi|158422263|ref|YP_001523555.1| flagellar biosynthesis protein FlhB [Azorhizobium caulinodans ORS 571] gi|158329152|dbj|BAF86637.1| flagellar biosynthetic protein [Azorhizobium caulinodans ORS 571] Length = 359 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 210/356 (58%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ ++KTE + +K+ DAL +GN P SRE +LF+S+L L L FF + +T Sbjct: 1 MSDDTDKESKTEEATERKVSDALEKGNVPYSRETALFASLLGILGVLTFFVVNPVRILTV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L L + L + L + L ++++P +LL G+ + L Q P L L Sbjct: 61 ELTHFLDNPAGFTLAGSDDAIALAWGVLLLMGQVLLPAVLLLAAAGLAASLFQNTPRLVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N ++P F R+ +G RI+S + + F KS K+++V I + L +++ + ++ Sbjct: 121 NRIQPQFSRIDPMKGWTRIFSRDGGIEFGKSAFKLVVVAVICGVLLMSERDKVMNAMYSD 180 Query: 181 P----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P IL A + V + ++ +A LD+ WS W ++L+M+KQE+K+E+KQ Sbjct: 181 PLLMPSVILSLATRLISAVCVATIVLVA----LDLVWSRFHWRAELRMTKQEVKEEMKQQ 236 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P++K R +S+A+ R R +MM + +AT+++ NPTHYA+AL Y + + AP +VAKG Sbjct: 237 EGDPMVKARMRSLAQQRARQRMMSSVPKATLVVANPTHYAIALYYDRQKGGAPQVVAKGT 296 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +LIA K+R+IA +IP+ E+ LAR+++ V ++ IPP FYK VA+++Y IY + Sbjct: 297 DLIALKIREIAERCSIPVIEDKPLARAMYDAVEVDQWIPPEFYKPVAKILYFIYSR 352 >gi|300024611|ref|YP_003757222.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC 51888] gi|299526432|gb|ADJ24901.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC 51888] Length = 360 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 125/353 (35%), Positives = 215/353 (60%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D ++TE + KK+ DA N+GN P SRE F ++A L+ + + S Sbjct: 1 MSEQDQ-QSRTEEATDKKLLDARNDGNVPSSREVPNFLYLMAALLVIAVLGQTFASHLGS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LLA+A +L + ++ L + +A+ + P +L F G+ + + Q P+ Sbjct: 60 LLVGLLANAGSIRLGNGGDVMLLFDVVGKAAAVVTAPIILAFGAAGVIASVAQNPPIPIA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P R+S +G+KR++S++ L F+K +++++V L + + I + Sbjct: 120 KRVIPDISRLSPAKGLKRMFSLSGLFEFLKLSLRLVVVVVTSVAILMYMWHDFTNSIWND 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +IL + +V +LI + L TL + D+ ++ W L+M++QEIKDE KQ G+P Sbjct: 180 PSAILTLSQKSVVALLISLALMSFTLLIFDLPVAHVLWRRSLRMARQEIKDEQKQMEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R++SIA++R R +M++ S+ATI+I NPTH+A+ALRY+++E AP +VAKGQ+LIA Sbjct: 240 LMKARRRSIAKARSRQRMLKGVSKATIVIANPTHFAVALRYVRSEGGAPRVVAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E+ IP+ E+ +LARSL+ +V ++ IP FY+A+A+++ ++ ++ Sbjct: 300 LKIRRIAEENAIPVIEDKALARSLYAKVEVDQMIPAEFYRAIAEILIRLQARR 352 >gi|319409199|emb|CBI82843.1| Flagellar biosynthetic protein flhB [Bartonella schoenbuchensis R1] Length = 356 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 209/356 (58%), Gaps = 8/356 (2%) Query: 4 NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 ++ PD +KTE P+ KI +GN P SRE +FSS+L+ + +F P I ++ Sbjct: 3 DEKPDKESKTEEPTEHKIHKEEEKGNLPFSRELPIFSSLLSFSVISIFIAFPAISQLSHF 62 Query: 62 LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L L ++ ED+ H+++L+ + + P L++ + GI + IQ +P + Sbjct: 63 LLQWLERPESWRINTAEDVKHLIYLVGG---NVGLALAPILIIIPLIGISASAIQHVPRI 119 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + ++P + RVSL G +RI+S LV F+KS K+I V I+ I +N ++ + Sbjct: 120 IMERIRPQWSRVSLSNGFERIFSKAGLVEFLKSLTKLIGVSIIVYIMFFKNNTIFINALL 179 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++ + + + + ++ +A + D+ WS W KL+MSKQEIK+E K G Sbjct: 180 TDAPALPEYIREKLVGLSLSFIVAVAAIAGFDLAWSRFHWRQKLRMSKQEIKEEHKSLEG 239 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP+IK R +S+A R+R +M+ AT+I+ NPTH+++ALRY + APV+VAKGQ++ Sbjct: 240 NPMIKARMRSLAHDRMRLRMISNVPTATLIVANPTHFSVALRYKPPLDYAPVVVAKGQDI 299 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +A ++R+IA E++IP+ E LAR+L+KQV ++ IPP Y++VA LI I +KI Sbjct: 300 LALQIREIAVENDIPVIENVELARTLYKQVEVDQVIPPELYESVAALIRFINSQKI 355 >gi|83309718|ref|YP_419982.1| flagellar biosynthesis protein FlhB [Magnetospirillum magneticum AMB-1] gi|82944559|dbj|BAE49423.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1] Length = 355 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/354 (34%), Positives = 209/354 (59%), Gaps = 19/354 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ D+KTE P+ +K+ A +GN P S+E +++S++ L+ ++ F+P + Sbjct: 1 MAEDS--DDKTEEPTDRKLSQAREQGNIPTSQEVKIWASLVGALV-VVTLFAP---YMAR 54 Query: 61 DLHVLL------ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D+ LL A ED+ LL+ +++ +L+I +++ ++ I S + Q Sbjct: 55 DIGRLLLPFVEHPHAFPMGREDVGQ---LLSGITVDMIKLLIMPMMMLVVLAIASAMGQS 111 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + + F ++S +G++RI+S NLV F+KS K+ +G +I + L + Sbjct: 112 GLMFLPDKLTLDFGKLSPGKGLQRIFSGRNLVEFVKSLFKVSAIGFVIFLILKSHMSEYA 171 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDE 232 + + ++L + V ++I+++L + L D W Y +W ++KM+KQEIKDE Sbjct: 172 GLAALDLMAVLDYLRHQVITMIIVVVLMVFVLAAAD--WFYQRWAFTQQMKMTKQEIKDE 229 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 KQ+ G+P+IK R +++ R R +MM A RA++++TNPTHYA+AL+Y Q APVLV Sbjct: 230 HKQTEGDPMIKGRLRALRMQRARQRMMAAVPRASVVVTNPTHYAVALQYDQDSMGAPVLV 289 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AKG +LIAK++R +A E+ +PI E P LAR+L+ V ++ IPP YK VA++I Sbjct: 290 AKGVDLIAKRIRDLATENEVPIVENPPLARALYATVELDQEIPPEHYKTVAEII 343 >gi|188581880|ref|YP_001925325.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001] gi|179345378|gb|ACB80790.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001] Length = 355 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 115/346 (33%), Positives = 193/346 (55%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MADESDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSAKPMAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + A L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGSIPSDAGTYLGVALRAGWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ + VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGTDAWVNFGKGLAKIIVVGTIAGAILWNEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L K++ +L A + + D + H+W+++L+M+K+E+K E K+S G+P Sbjct: 180 PGAALQGTLTLALKMMGGMLAAYAAIALGDALYQRHRWHTRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTHYA+ALRY +T APV VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHYAVALRY-ETGMAAPVCVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R +A +H++P+ E P LAR+L V +++ IP Y+AVA++I Sbjct: 299 LRIRAVAADHDVPVLENPPLARALHATVEVDAEIPAEHYRAVAEVI 344 >gi|319406964|emb|CBI80601.1| Flagellar biosynthetic protein flhB [Bartonella sp. 1-1C] Length = 356 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 206/355 (58%), Gaps = 8/355 (2%) Query: 4 NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 ++ PD ++TE P+ KI +GN P SRE +F+S+++ + +F P I +T Sbjct: 3 DEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLTYF 62 Query: 62 LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L L ++ ED+ H+++LL SA + P L+L + I + +Q +P Sbjct: 63 LIQWLERPESWRINTAEDVKHLIYLLGG---SAGLALAPILILIPLLSITASAVQNVPKF 119 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + ++P + R+S G KRIYS LV F+KS K+I V II + ++ ++ + Sbjct: 120 VIERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYMIFFKSNTIFINALL 179 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++ + + + + + + L LDI WS W +L+M+KQEIK+E K G Sbjct: 180 TDASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEG 239 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP++K R +S++R RIR +M+ AT+IITNPTH+++ALRY + APV++AKG ++ Sbjct: 240 NPMVKARMRSLSRDRIRRRMIANVPTATLIITNPTHFSVALRYKPPLDYAPVVIAKGLDI 299 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +R+IA EH IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K Sbjct: 300 LALHIREIAVEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354 >gi|319403947|emb|CBI77535.1| Flagellar biosynthetic protein flhB [Bartonella rochalimae ATCC BAA-1498] Length = 356 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 205/355 (57%), Gaps = 8/355 (2%) Query: 4 NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 ++ PD ++TE P+ KI +GN P SRE +F+S+++ + +F P I +T Sbjct: 3 DEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLTYF 62 Query: 62 LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L L ++ ED+ H+++LL S + P L+L + I + +Q +P Sbjct: 63 LIQWLERPESWRINTAEDVKHLIYLLGG---SVGLALAPILILIPLLSITASAVQNVPRF 119 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + ++P + R+S G KRIYS LV F+KS K+I V II I ++ ++ + Sbjct: 120 VIERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYIIFFKSNTIFINALL 179 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++ + + + + + + L LDI WS W +L+M+KQEIK+E K G Sbjct: 180 TDASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEG 239 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP++K R +S++R RIR +M+ AT+I+TNPTH+++ALRY + APV++AKG ++ Sbjct: 240 NPMVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGLDI 299 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +R+IA EH IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K Sbjct: 300 LALHIREIAIEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354 >gi|319405388|emb|CBI79007.1| Flagellar biosynthetic protein flhB [Bartonella sp. AR 15-3] Length = 356 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 204/361 (56%), Gaps = 30/361 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 ++KTE P+ KI +GN P SRE +F+S+++ + +F P I +T L L Sbjct: 9 ESKTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICVFISFPAISKLTYFLVQWLE 68 Query: 68 SATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++ ED+ H+++L+ + + P L+L + I + +Q +P + ++ Sbjct: 69 RPESWRINTAEDVKHLIYLVGG---NVGLALAPILILIPLLSITASAVQNVPKFIIERIR 125 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P + R+S G RIYS LV F+KS K+I V II L F +N +I Sbjct: 126 PQWSRISPANGFNRIYSKAGLVEFLKSLTKLIGVSLII----------YLIFFKSN--TI 173 Query: 185 LYHAFFT--------VRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +A T + K LI + L T L LDI WS W +L+M+KQEIK+E Sbjct: 174 FINALLTDASALPKYIHKELINLSLSFTTAVIALVGLDIAWSRFHWRQQLRMTKQEIKEE 233 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K GNP++K R +S++R RIR +M+ AT+I+TNPTH+++ALRY + APV++ Sbjct: 234 HKNLEGNPVVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVI 293 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKGQ+++A +R+IA EH+IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++ Sbjct: 294 AKGQDILALHIREIAIEHDIPIFENITLARTLYKQVEIDQTIPTELYESVAALIRFINNQ 353 Query: 353 K 353 K Sbjct: 354 K 354 >gi|295690541|ref|YP_003594234.1| flagellar biosynthetic protein Flhb [Caulobacter segnis ATCC 21756] gi|295432444|gb|ADG11616.1| flagellar biosynthetic protein FlhB [Caulobacter segnis ATCC 21756] Length = 361 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 109/357 (30%), Positives = 202/357 (56%), Gaps = 9/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ P++KTE PS+K++ DA +G+ S + +S+ + ++ +++ Sbjct: 1 MADDTDPESKTEEPSAKRLADARAKGDVVKSADIPQLASLAGAVSVVILAGGWLTRDLSA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF----GIGSYLIQRIP 116 L+ +A A L +V + A+ +P L+L M+ G +++ Q Sbjct: 61 ALYPFIAHAGTIDLSSAGAMVVMK-----QATMAALPPLILVMLVSAFAGAIAHIAQSGF 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 +L + +KP F ++ L +G+ RI+ I+ V F KS VK ++ G I + L + + + Sbjct: 116 LLTPSKLKPDFSKLDLIKGLGRIFGIDGFVQFAKSAVKFLVTGLIAWMVLKPHVGEVRNL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + +P ++L A + +L+ +++F+ D W ++ ++++M+ QE+KDE KQS Sbjct: 176 VGMDPAAMLPEALKLSKSLLMAVIIFLTATAAFDWFWQRQRFMNRMRMTLQEVKDEFKQS 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K +++ I R R +MM+A +AT+++ NPTHYA+AL+Y E AP+ VAKG Sbjct: 236 DGDPHVKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEAGETPAPLCVAKGV 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A K+R IA EH +P+ E+P LAR+L+ V ++ IP ++AVA++I I + K Sbjct: 296 DELALKIRAIAEEHGVPVLEDPPLARALYASVEVDEEIPVEHFEAVAKVISFILNGK 352 >gi|319898624|ref|YP_004158717.1| flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73] gi|319402588|emb|CBI76133.1| Flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73] Length = 356 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/359 (35%), Positives = 208/359 (57%), Gaps = 16/359 (4%) Query: 4 NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 ++ PD ++TE P+ KI +GN P SRE +F+S+++ + +F P I +T Sbjct: 3 DEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICIFISFPAISKLTFF 62 Query: 62 LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L ++ EDI H+++L+ S + P L+L + I + +Q +P Sbjct: 63 LVQWFERPESWRINTAEDIKHLIYLVGG---SVGLALAPILILIPLLNIVASAVQNVPRF 119 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + ++P + RVS G KRIYS LV F+KS K+I V I+ + ++ ++ + Sbjct: 120 VIERIRPQWSRVSPANGFKRIYSKAGLVEFLKSLTKLIGVSLIVYMIFFKSNTIFINALL 179 Query: 179 ANPHSILYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + ++ + +RK LI + L + L LD+ WS W +L+M+KQEIK+E K Sbjct: 180 TDASALPEY----IRKELISLSLSFTAAVVALVGLDLAWSRFHWRQQLRMTKQEIKEEHK 235 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 GNP++K R +S+AR R R +M+ AT+I+TNPTH+++ALRY + APV++AK Sbjct: 236 NLEGNPMVKARMRSLARDRTRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAK 295 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 GQ+++A +R+IA +++IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K Sbjct: 296 GQDILALHIREIAIKNDIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354 >gi|163852023|ref|YP_001640066.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens PA1] gi|163663628|gb|ABY30995.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens PA1] Length = 354 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 112/346 (32%), Positives = 190/346 (54%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + A L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ ++ VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTH+A+ALRY + AP+ VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPICVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I Sbjct: 299 LRIRAVATDHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVI 344 >gi|121601720|ref|YP_989412.1| flagellar biosynthesis protein FlhB [Bartonella bacilliformis KC583] gi|120613897|gb|ABM44498.1| flagellar biosynthetic protein FlhB [Bartonella bacilliformis KC583] Length = 356 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 117/356 (32%), Positives = 204/356 (57%), Gaps = 8/356 (2%) Query: 4 NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 ++ PD ++TE P+ KI A +GN P SRE + +S+++ + +F P + +++ Sbjct: 3 DEKPDKESQTEEPTEHKIHKAEEKGNLPFSRELPILASLMSFSLITIFVAFPAMSNLSRF 62 Query: 62 LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L L + ED+ H+++L+ +L + + ++ + + IQ P + Sbjct: 63 LTEWLERPESWHINTAEDVKHLIYLVGG-NLGLALAALLIIIPLISIAASA--IQNAPRI 119 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + P + R+S G RI+ + F+KS VK+I V I+ I +N ++ + Sbjct: 120 VTERISPKWSRISPANGFGRIFGKAGFIEFLKSLVKLIGVSIIVYIMFFKNNTIFINALL 179 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++ + + + + ++ +A + D+ WS W +L+M+KQE+KDE K G Sbjct: 180 TDAPALPEYIRQKLVDLSLSFIVAVAIIAGFDLAWSRFYWRQQLRMTKQEVKDEYKNLEG 239 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP++K+R +S+AR RIR KM+ AT+I+TNPTH+++ALRY + APV++AKGQ++ Sbjct: 240 NPMVKSRMRSLARDRIRRKMIANVPTATLIVTNPTHFSVALRYKPPLDHAPVVIAKGQDI 299 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +A +R+IA +H+IPI E+ LAR+L+KQV ++ IPP FY+ VA LI I +KI Sbjct: 300 LALHIREIATKHDIPIIEDQPLARALYKQVEVDQTIPPEFYEGVAALIRFINSQKI 355 >gi|304392516|ref|ZP_07374456.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130] gi|303295146|gb|EFL89506.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130] Length = 354 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/353 (34%), Positives = 199/353 (56%), Gaps = 9/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D +K+E PS KKI+DAL++G +SRE ++ +S++ +++ F ++ Sbjct: 1 MSDED-DGSKSEEPSEKKIKDALDKGQTAVSREVAIVASLIVLTVFVSTFARDMAVGLSD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L A ++ S L ++ AS + L++ ++ + S IQ P + Sbjct: 60 KLGGLWEHAGTIRILSGSDAATLSGSIAAEASLALAAFLIMVIIGALISAFIQAEPRMVA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P ++R+S +G KR++ L +F K K+ + T + L M+ + Sbjct: 120 DRITPKYERISPAKGAKRLFGQQGLFDFAKQLAKLSVATTAVVSVLAGAPEKMMQAMPLG 179 Query: 181 PHSILYHAFFTVRK----VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P Y+ TVR +L ILL + + V+D+ W+ W L+MS +E+KDE+KQS Sbjct: 180 P----YYIGDTVRDLLGGMLTAILLAMVFVAVVDVVWTRFSWRKGLRMSLKEVKDEVKQS 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+PI+K RQ+S+AR R R++MMEA AT+++ NP H A+ALRY T++ APV+VAKGQ Sbjct: 236 DGDPIVKARQQSVARDRARNRMMEAVPNATLVVANPIHVAVALRYDPTKDVAPVVVAKGQ 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + ++R+IA E +P+ E +AR L K VP+ + IP FY VA+LI ++ Sbjct: 296 ERLCWRIREIAEEAGVPVVENIPVARGLHKSVPLGALIPESFYVVVAELIKQL 348 >gi|218530777|ref|YP_002421593.1| flagellar biosynthetic protein FlhB [Methylobacterium chloromethanicum CM4] gi|218523080|gb|ACK83665.1| flagellar biosynthetic protein FlhB [Methylobacterium chloromethanicum CM4] Length = 354 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 189/346 (54%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ ++ VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDAFYQRNRWHKRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTH+A+ALRY + AP+ VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPICVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVI 344 >gi|240139290|ref|YP_002963765.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] gi|254561746|ref|YP_003068841.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] gi|240009262|gb|ACS40488.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] gi|254269024|emb|CAX24985.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] Length = 354 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 189/346 (54%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ ++ VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTH+A+ALRY + AP+ VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPICVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVI 344 >gi|312115253|ref|YP_004012849.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100] gi|311220382|gb|ADP71750.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100] Length = 353 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 206/352 (58%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++N DNKTEAPS K++ D+L++ P SRE + +++ A +++L+ V Sbjct: 1 MADNSETDNKTEAPSEKRLRDSLDKDGGPSSREVNSAAALFALVLFLMTMAPADFGEVVK 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L V + + LE+ + F+L L+ +P +L+ + + + Q P L Sbjct: 61 NLSVFIEDPSGFSLENGADAFFILQLAGLTIFNFALPLVLMLLAATLLASFAQNPPTLIF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N + P R+S + G+KR+++ + +V+ +KSF+K +V ++ +L + + Sbjct: 121 NKIAPDLARISPQAGLKRLFAFDAVVDLLKSFIKFGIVAIAFYVAFQGGAAALLVLQTDS 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +I + +LI L A L V D+ W+ +W KLKMS+Q++KDE KQS G+P Sbjct: 181 ASTIELIKRLAFKAILICALA-CAVLAVADVFWTRFRWLRKLKMSRQDLKDEHKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ R ++IAR+R+R MM + AT++I NPTHYA+ALRY++ ++ AP +AKG+N +A Sbjct: 240 MLRARARAIARARVRRNMMTSVPNATVVIANPTHYAVALRYVRGQDRAPQTLAKGKNKLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++R IA ++N+P+ E +LA+SL V ++ IP FYKAVA++I I K Sbjct: 300 LRIRSIAEDNNVPVVENKALAKSLHDAVRVDQPIPHEFYKAVAEVIIYINKK 351 >gi|89068708|ref|ZP_01156094.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] gi|89045671|gb|EAR51733.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] Length = 373 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/351 (31%), Positives = 200/351 (56%), Gaps = 7/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VT 59 M+E++ +KTE PS +K++ A ++G+ P SRE + ++ L+ L F P + S + Sbjct: 1 MAEDEDKHSKTEQPSERKLKKARDKGDVPASRETGT-AMVVFSLMLLSAFLIPSVGSGLV 59 Query: 60 SDLHVLLASATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + L L+ A Q +++ ++ + L + L+ R++ P LL ++ + LIQ Sbjct: 60 AALGALIDVAGQVEIDSGRAGLADVSALSSELTGQVGRVLAPLFLLMIVGALFGVLIQGE 119 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V++L ++P + ++S G+KR++S + +V F+K+ +K+++V I T + + + Sbjct: 120 TVVSLERIRPKYSKISPLGGVKRLFSADMIVEFLKNTLKVVIVAAIGTW-IARRAVSQVW 178 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 S P ++ V +L+ + + DI W QW K +MS +E++DE K+ Sbjct: 179 MGSLAPEALPGFVRGEVTAMLMATAALLVPFAIADILWKRAQWTKKQRMSLKEVRDEHKE 238 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P IK ++ I R R R ++ A +AT+IITNPTH+A+ALRY + APV VAKG Sbjct: 239 TEGDPFIKQKRTDIRRERARQRIATAVPKATVIITNPTHFAVALRYQPGVDQAPVCVAKG 298 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +A ++R++ E++IPI E LARSL I++ +P ++A+A++I Sbjct: 299 ADHVAARIRELGRENDIPILENKPLARSLHAVAEIDAVVPVEHWQALAEII 349 >gi|328543170|ref|YP_004303279.1| flagellar biosynthesis protein B [polymorphum gilvum SL003B-26A1] gi|326412916|gb|ADZ69979.1| Flagellar biosynthesis protein B [Polymorphum gilvum SL003B-26A1] Length = 359 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 116/349 (33%), Positives = 193/349 (55%), Gaps = 8/349 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ K++++A +G+ P S+E S + + LA ++ F+P +VT+ Sbjct: 1 MADDTDDSEKTEDPTQKRLKEAHEKGDLPKSQEVSTWFT-LAGAAMMIALFAP---AVTT 56 Query: 61 DLHVLLASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 +L L + E D + L S + +V LL + + L+Q V Sbjct: 57 ELGTQLKWYLEHAHEIPADGYALKALWRDTGQSVALIVGLPLLALVAMAVAGNLVQHEAV 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +KP +VS G KR++S +L+NF K +KI++VG ++ L I Sbjct: 117 FTAEPIKPKLSKVSPLSGFKRLFSGQSLMNFAKGMLKIVIVGAVMVAVLWPQRDRAEAVI 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + S+L A V ++L +L + + D W H+W+ K KMS +E+K+E KQ+ Sbjct: 177 FVDVSSLLEEARGLVLQLLAAVLAIMTVVAGADYVWQRHKWFEKQKMSMRELKEEYKQTE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P++K + + + R R +MM A +AT+++TNPTHYA+ALRY + AP+ VAKG + Sbjct: 237 GDPLVKGKIRQLRMERSRKRMMAAVPQATVVVTNPTHYAVALRY-EEGMGAPLCVAKGTD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA K+R++A +H +P+ E P LAR+L+ V ++ IP YKAVA++I Sbjct: 296 AIALKIREVARQHEVPVVENPPLARALYASVDVDREIPEDHYKAVAEVI 344 >gi|254501745|ref|ZP_05113896.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] gi|222437816|gb|EEE44495.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] Length = 359 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 194/360 (53%), Gaps = 22/360 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DA ++G+ P S+E S + + LA ++ +PG + Sbjct: 1 MADETDDSEKTEDPTQKRLKDAHDKGDVPKSQEVSTWFT-LAGATLMIAIMAPGAAASLG 59 Query: 61 DL--------HVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 +L H + K D V L+ L L A L++ +FG Sbjct: 60 NLLKGYIEHAHQIPVDGYALKALWRDTGQSVALIVGLPLLA-------LVVMAVFG---N 109 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 LIQ P+L +KP +VS G KR++S +LVNF K VKI++VG ++ L + Sbjct: 110 LIQHQPLLTAETIKPKLSKVSPLSGFKRLFSSESLVNFAKGMVKILVVGAVMVAVLWPHR 169 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 I A+ IL A + +VL IL + + D + ++W++K KMS +E+K Sbjct: 170 DEAEIMIFADEMIILEEARILILQVLAAILAVMTVVAAADFVYQKNKWFNKQKMSLKEVK 229 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 +E KQ+ G+P +K + + + R R +MM A AT+++TNPTHYA+AL+Y + AP+ Sbjct: 230 EEFKQTEGDPHVKGKIRQLRMERSRKRMMSAVPAATVVVTNPTHYAVALQY-EEGMGAPL 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 VAKG + +A ++R +A EH +P+ E P LAR+L+ V I +P +KAVA++I ++ Sbjct: 289 CVAKGTDALALRIRDVAKEHEVPVIENPPLARALYASVEIEQEVPEEHFKAVAEVIGFVF 348 >gi|307945650|ref|ZP_07660986.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4] gi|307771523|gb|EFO30748.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4] Length = 359 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/356 (33%), Positives = 198/356 (55%), Gaps = 12/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-YSVT 59 M+++ KTE P+ K+++DAL++G+ S+E S + + LA L+ F+P I +V Sbjct: 1 MADDQDDAEKTEDPTQKRLKDALDKGDVAKSQEVSTWFT-LAGTTLLIALFAPTIGAAVG 59 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHL--SLSASRLVIPGLLL--FMMFGIGSYLIQRI 115 + L + A DI F L L S +I GL L ++ I ++Q Sbjct: 60 NHLKGFMEHA-----HDIPVDGFALKALWRDTGQSIALIVGLPLMALVVMAIAGNMVQHQ 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V +KP +VS G KR++S ++LVNF K KI +VG ++ + L + Sbjct: 115 LVFTAETMKPKLSKVSPLSGFKRLFSKDSLVNFAKGLAKIFVVGALMVLVLWPHRDEADI 174 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 I A+P +L A F + ++L ++ F+ + D + ++W++K KMS +++KDE KQ Sbjct: 175 MIFADPVILLEEARFLILQLLGAVMAFMTVVAAADYAYQKNKWFNKQKMSLRDVKDEYKQ 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P +K + + + R R +MM A AT+++TNPTH+A+AL+Y + AP+ +AKG Sbjct: 235 TEGDPHVKGKIRQLRMERSRKRMMAAVPDATVVVTNPTHFAVALKY-EEGMGAPLCLAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R++A E IP+ E P LAR+L+ V I +P YKAVA++I +Y Sbjct: 294 TDAVALKIRELAKEKKIPVVENPPLARALYASVEIEQEVPEEHYKAVAEVIGFVYR 349 >gi|118588696|ref|ZP_01546104.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] gi|118438682|gb|EAV45315.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] Length = 359 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 194/346 (56%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ K++++A ++G+ P S+E S + ++ + + F S+ Sbjct: 1 MADDSDDSEKTEDPTHKRLKEAHDKGDVPKSQEVSTWFTLAGATLMIAIFAPSTAVSLGE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L A Q ++ + + L S + +V LL ++ + L+Q P+L Sbjct: 61 MMKGYLEHAHQIAVDGYA-LKALWRDTGQSVALIVGIPLLALVIMAVAGNLVQHQPLLTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +VS G KR++S +LVNF K +KI +VG I+ + + + A+ Sbjct: 120 ETIKPKLSKVSPASGFKRLFSSESLVNFAKGMIKISVVGAIMVAVMWPHRDEAEVMVFAD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + IL A + ++L +L + + D + ++W++K KMS +E+K+E KQ+ G+P Sbjct: 180 TNIILEEARILILQLLSAVLAVMTVVAGADFIYQRNKWFNKQKMSLREVKEEYKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R R +MM A +AT+++TNPTHYA+AL+Y + AP+ +AKG + IA Sbjct: 240 QIKGKIRQLRMERSRKRMMSAVPQATVVVTNPTHYAVALKY-EEGMGAPLCLAKGTDAIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R+IA E +IP+ E P LAR+L+ V I+ +P YKAVA++I Sbjct: 299 LKIREIAKESDIPVVENPPLARALYATVEIDQEVPEEHYKAVAEVI 344 >gi|144900464|emb|CAM77328.1| Type III secretion exporter [Magnetospirillum gryphiswaldense MSR-1] Length = 357 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 194/344 (56%), Gaps = 2/344 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++A D+KTE P+ K++ DA EGN P + EA S++ I L F +++ + + Sbjct: 3 DEASDDKTEEPTGKRLGDARTEGNIPQTMEAKAMMSLVLAAIMLGFLAPDMAHNIKAVIT 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL-NH 122 + ++ LL ++IP L + G+ + L Q L + Sbjct: 63 PYIEQVHLMEVGPDGLGELLLHLSLGVLQSMIIP-FALVIFLGVVASLAQTKGFLWVPKK 121 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P FK+++ EG KRI+S+N L+ K +K+ ++G ++ L + + + + Sbjct: 122 IAPDFKKLNPLEGYKRIFSVNQLMELGKQLIKLTVLGLLLGWVLWGSIGEIENLANLELM 181 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 +IL + + ++++ L+ + L V D + +W K+KM+KQE+KDE KQ+ G+P + Sbjct: 182 AILEYISDKIFWMVLVTLMMVTLLAVGDYLFQRWRWMEKMKMTKQEVKDEHKQAEGDPQV 241 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + KS+ R R +MM A +A ++ITNPTHYA+AL+Y AP+LVAKG +L+AK+ Sbjct: 242 KAKIKSLRFQRARKRMMAAVPKADVVITNPTHYAVALKYDLDAMSAPILVAKGTDLVAKR 301 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A EH++PI E P +AR+LF V ++ IPP YKAVA++I Sbjct: 302 IRDLADEHDVPIVENPPVARALFAAVELDQEIPPEHYKAVAEII 345 >gi|299131771|ref|ZP_07024966.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2] gi|298591908|gb|EFI52108.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2] Length = 356 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/344 (33%), Positives = 197/344 (57%), Gaps = 4/344 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VTSDL 62 + ++KT+ P++K++EDA G+ S E + + ++A +++ FS I + +T L Sbjct: 3 EEGDEDKTQDPTAKRLEDAHKRGDVAKSIEVNTWF-MIAGATFIMSSFSGSIANKLTVPL 61 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 LL A + K + S ++ + ++ + L IP L ++ +GS+LIQ PV +++ Sbjct: 62 KNLLEHAGRMKTDGPSLLLLVGRLETVMLTALGIP-FALLIVAAVGSHLIQHRPVWSVDP 120 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P F ++S G KR++ NF K K+I++G ++ + + + + +P Sbjct: 121 ITPKFSKLSPMSGAKRLFGKQAAANFAKGLFKVIVLGVVMAMVMWPEHERADVMVRIDPS 180 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 +L K++ ++ +A + LD + Y W+ + KMS QE+KDE KQS G+P I Sbjct: 181 LMLDLTRSMALKLMGTVVAMLAIVATLDYLFQYRSWFERQKMSLQEVKDEYKQSEGDPHI 240 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R +++ +R+R +MM A A+++ITNPTHYA+AL+Y + AP+ VAKG +LIA K Sbjct: 241 KGRIRALRVARMRKRMMAAVPTASVVITNPTHYAVALKY-ERGMPAPICVAKGVDLIAFK 299 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R++A H+IP+ E LAR+L V I+ IP Y AVA++I Sbjct: 300 IREVAAAHDIPVVENVPLARALHASVEIDDEIPVEHYHAVAEVI 343 >gi|254470232|ref|ZP_05083636.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] gi|211960543|gb|EEA95739.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] Length = 358 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 116/350 (33%), Positives = 194/350 (55%), Gaps = 10/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ KTE P+ K+++DA +G+ P S+E S + S++ + + F + SV++ Sbjct: 1 MAEDTDDSEKTEDPTQKRLDDAFEKGDIPKSQEVSSWFSLVGTALVISFLAPTMVSSVST 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A A + D +VFLL +V LL M + ++Q P+ Sbjct: 61 ILKGFFAHADTIAV-DPGALVFLLEITGPEILGVVALPLLTLMALAVVGNVVQHKPLWTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++S G+KR++S ++L NF+K VKII V + + L LD + Sbjct: 120 ERLKPKLNKISPLSGMKRLFSKDSLANFLKGLVKIIAVAAAVFLVLWPER-DRLDTVVFR 178 Query: 181 PHSILYHAFFTVRKVLIMIL-LFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ VR++ IM++ +A +TV+ D+ W +W+ K KM++QE+K+E KQS Sbjct: 179 ETGLVLE---EVRELAIMVIGAILALMTVVAGADLVWQRKKWFEKQKMTQQEVKEEYKQS 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK + + + R R++MM + AT++ITNPTHYA+AL Y + AP VA G Sbjct: 236 EGDPKIKAKIRELRLQRSRNRMMASVPDATVVITNPTHYAVALSY-EEGMGAPQCVALGV 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +A ++R++A E ++PI E P LAR+L+ + +N +P Y AVA++I Sbjct: 295 DDLALRIREVAKESDVPIVENPPLARALYASIELNDYVPEEHYAAVAKVI 344 >gi|209884540|ref|YP_002288397.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] gi|209872736|gb|ACI92532.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] Length = 355 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/348 (33%), Positives = 190/348 (54%), Gaps = 8/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ D+KT+ P++K++E+A G+ S E + + + + F S+T Sbjct: 1 MAEDS--DDKTQDPTAKRLEEAHKRGDVAKSIEVNTWFMVAGATFVMSSFSDSVASSITV 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--LLFMMFGIGSYLIQRIPVL 118 L LL A + +++ S L L LV GL LL ++ I S+L+Q PV Sbjct: 59 PLKNLLQHAGEMRVDGAS---LLQLAARLEIMLLVALGLPFLLLVIAAIASHLVQHRPVW 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + + P + ++S G KR++ NF K K+I +G ++ + + + + Sbjct: 116 STDPITPKWSKLSPLAGAKRLFGKQAAANFAKGLFKVITIGVVMAVVMWPEHERADAMVR 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 +P +L K++ ++ +A + LD + Y W+ + KMS QE+KDE KQS G Sbjct: 176 LDPSLMLDLTRSMALKLMGTVVAMLALVAALDYLFQYRSWFERQKMSLQEVKDEYKQSEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK R +++ +R+R +MM A A+++ITNPTHYA+ALRY + AP+ VAKG +L Sbjct: 236 DPQIKGRIRALRMARVRKRMMAAVPTASVVITNPTHYAVALRY-ERGMPAPICVAKGVDL 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA K+R++A H++PI E LAR+L V I+ IP Y AVA++I Sbjct: 295 IAFKIREVATAHDVPIVENVPLARALHASVEIDDEIPVEHYHAVAEVI 342 >gi|74317263|ref|YP_315003.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] gi|74056758|gb|AAZ97198.1| Flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] Length = 390 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/356 (30%), Positives = 191/356 (53%), Gaps = 17/356 (4%) Query: 3 ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62 E+D +TEAPS +++E A EG SRE + F +L ++++ S L Sbjct: 4 ESD--QERTEAPSPQRLEKAREEGQVLQSRELATF--------VVLMTGGAALWAMASQL 53 Query: 63 HVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 L+ + L+ D +H++ L+ A+ + P LLL ++ S ++ R Sbjct: 54 GQTLSQIVRGGLQFHPAVARDSAHVMTQLSQQFFDATLALAPFLLLVVIATFASPILLRG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + P FKR+S G KR++S LV +K+ K+ L+G + + N ++ Sbjct: 114 WLFSTKAFMPDFKRLSPLAGFKRMFSSQGLVELVKALAKVGLLGGVAAWLVWSNVEAIVS 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 P + + H + KV ++ + + VLD+ + +Y+KLKM+K++++ E K+ Sbjct: 174 LSLEAPTAAIGHMGDIIGKVFLLASGAMIFIVVLDLPYQLWNFYNKLKMTKEQLRQEAKE 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P +K R ++ R R +MM A +++TNPTHYA+AL+Y + + AP +VAKG Sbjct: 234 SEGDPHVKARIRAQQREVARRRMMAEVPSADVVVTNPTHYAVALKYSEGKMGAPRVVAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +L+A K+R+IA EH +P+ E P LAR+LF+ I + IP Y AVA+++ ++ Sbjct: 294 ADLVAAKIREIAAEHRVPLLEAPPLARALFRHTDIGNEIPATLYAAVAEVLAYVFQ 349 >gi|163794129|ref|ZP_02188102.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199] gi|159180743|gb|EDP65262.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199] Length = 358 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/354 (32%), Positives = 203/354 (57%), Gaps = 3/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVT 59 MS++ KTE P+ KK+ DA +G S+E + F+S+LA L + + +P + + Sbjct: 1 MSDSQDDSQKTEEPTGKKLGDARKKGQIAQSKEVTNFASLLA-LTFAVTILAPYMAIQLY 59 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 S + V++ A ++ D +L L + + P L M+ G+ + L Q + Sbjct: 60 SSMAVVIEHAAVARI-DAGSTSEILMGLVIDTFLALAPTLGTVMVLGVAATLGQSGILFT 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + P +++S G KR++S+ ++V F+K +K+ +V I + ++ + ++ Sbjct: 119 TDPIMPKLEKLSPLAGFKRLFSLKSIVEFIKGIIKLAIVAFIAYVLMSPELDRAEELLTM 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + +L V ++++ +L F+A + + D + ++ Y +L+MS+Q+I+DE KQ+ G+ Sbjct: 179 DLIEVLKEIQTLVIRLMMGVLAFMAVVAIADYIYQRYEHYKQLRMSRQDIRDEHKQAEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK R + I R R +MM A +A ++ITNPTH+A+AL+Y + APV+VAKG + + Sbjct: 239 PQIKARLRQIRADRARRRMMAAVPKADVVITNPTHFAVALQYDTSAMAAPVVVAKGSDAV 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R++A EH +PI E P LAR+LF V I+ IP +YKAVAQ+I +Y K Sbjct: 299 AFRIREVAKEHKVPIVENPPLARALFASVEIDEQIPETYYKAVAQVISYVYRLK 352 >gi|253688980|ref|YP_003018170.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755558|gb|ACT13634.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 383 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 114/353 (32%), Positives = 190/353 (53%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ KTEAP+ +K E A EG P SRE +S+L + L + G ++ L Sbjct: 3 DDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWIGG-DAMAGRLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +++ + I +L H+ A+ +IP + ++ + + L+ + + Sbjct: 59 RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAASALIPIMFGAVLVALSAPLLLGGVLFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L IS + Sbjct: 119 KSLKVNFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLISES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P S L A +I++ + + D+ W KL+MSKQEI+DE KQS G+P Sbjct: 179 PISALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ I IP Y AVA+++ +Y K Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEIGEHIPAALYAAVAEVLAWVYQLK 351 >gi|261821144|ref|YP_003259250.1| flagellar biosynthesis protein FlhB [Pectobacterium wasabiae WPP163] gi|261605157|gb|ACX87643.1| flagellar biosynthetic protein FlhB [Pectobacterium wasabiae WPP163] Length = 383 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 111/353 (31%), Positives = 188/353 (53%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTEAP+ +K E A EG P SRE +S+L + L + G ++ L Sbjct: 3 EDSDLEKTEAPTPQKEEKAREEGQVPRSRE---LTSVLMMVAGLAILWMGG-DAMAGRLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 V++A + I +L H+ A+ +IP +L ++ + + ++ + + Sbjct: 59 VIVAQSLNFDYATIGDDTQMLRHVGSLLHQAASALIPIMLGSVLVALSAPMLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGVISTLFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A +I++ + + D+ W KL+M+KQEI+DE KQS G+P Sbjct: 179 PIAALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ +H +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGIDHRVPILEAPPLARALFRHSEVGEHIPAALYAAVAEVLAWVYQLK 351 >gi|167645349|ref|YP_001683012.1| flagellar biosynthesis protein FlhB [Caulobacter sp. K31] gi|167347779|gb|ABZ70514.1| flagellar biosynthetic protein FlhB [Caulobacter sp. K31] Length = 360 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 104/350 (29%), Positives = 192/350 (54%), Gaps = 10/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ +KTE P++KK+ DA +G+ P S + S +S+ ++ + + Sbjct: 1 MADDQDEASKTEEPTAKKLSDARAKGDVPKSADISQLASLSGAFGVVVIAGGWLTRDLVN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM----MFGIGSYLIQRIP 116 L A A +E + ++ +A +P L+L M + G + + Q Sbjct: 61 QLTPFFAHAGTMDVEG------GVNAIAKTAVMAALPALVLVMVVSGLLGAAANVAQSGF 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 +L+ + +KP +++ + +G+KR++ ++ V F KS VK ++ G I + + + + Sbjct: 115 ILSADKIKPDLQKLDIIKGLKRVFGMDGFVQFAKSAVKFLVTGLIAWYVVKPDAAQIPNL 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + +I+ + K+ M+L+F+ D W ++ +++MS Q+IKDE KQS Sbjct: 175 VGMDVGAIIPLSMKLCTKLFWMVLIFLMATAGFDWFWQRLRFNKRMRMSLQDIKDEHKQS 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K +QK + R R +MM A +AT++I NPTHYA+AL+Y Q EN AP+ VAKG Sbjct: 235 EGDPHVKGKQKQLRMQRSRQRMMAAVPKATVVIMNPTHYAVALKYEQGENAAPICVAKGV 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +A ++R +A E + I E+P LAR+L+ + ++ IP ++AVA++I Sbjct: 295 DDLALRIRAVAEEAGVYILEDPPLARALYAAMDVDEQIPAEHFEAVAKVI 344 >gi|84502407|ref|ZP_01000543.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis HTCC2597] gi|84389219|gb|EAQ02016.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis HTCC2597] Length = 374 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 110/350 (31%), Positives = 194/350 (55%), Gaps = 4/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ NKTE P+ +K+ A +G+ P SRE S+++ + +FF ++ Sbjct: 1 MAENEDQTNKTEEPTPRKLRQAREKGDVPSSREVGNMMSVMSLFLVAIFFLPQLGPTLVG 60 Query: 61 DLHVLLASATQRKL-EDISHIVFL---LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L + +A Q ++ ED+ + L LS + ++ P ++ + + LIQ Sbjct: 61 TLRRVFENAGQVRIGEDVQGLRDLGQVTMELSGGLATVLAPVAATMLLAAVAAVLIQGEV 120 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V+ ++ + P +++ +G K+I+SI++ V F+KS K+++VG I + Sbjct: 121 VVAVDRITPKLSKINPIQGFKKIFSIDSFVEFLKSVAKVLVVGGISIYIAQIAVRGIWQT 180 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P S+L + +LI + L + L+V D+ W QW K +MS QEI+DE K+ Sbjct: 181 EGVTPESVLSYIGRYAALLLITVTLLLTVLSVADVMWKRFQWMKKQRMSVQEIRDEHKEM 240 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P+I+ ++ R R + ++ A +AT+++TNPTH+A+ALRY + APV VAKG Sbjct: 241 EGDPLIRAKRAEQRRKRAQQRITTAVPQATVVLTNPTHFAVALRYDNGTDQAPVCVAKGV 300 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +L+A ++RK+A E+ +P+ E LAR+L+ I+ IP ++AVA++I Sbjct: 301 DLMAAQVRKVARENEVPVVENKPLARALYDVAEIDEEIPFEHWQAVAEII 350 >gi|306820134|ref|ZP_07453782.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551912|gb|EFM39855.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 379 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 198/358 (55%), Gaps = 26/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIYSVTSD--- 61 KTE + KK ED +GN SRE ASLF+++ A + FS I V D Sbjct: 27 EKTEEATPKKKEDTRKKGNVLQSRELTGAASLFAAVFA-----INTFSKEILKVIVDAWN 81 Query: 62 --LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 +L + +++ LL + ++IP +L+ ++L+Q+ V N Sbjct: 82 YYTGMLNSFELTNQMQAYKLFTTLLIFCVKAMLFIIIPVVLV-------AFLVQKAQVGN 134 Query: 120 L---NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + ++P +R+S+ G KR++S+ + V +KS +KI+LVG + + +N ++ Sbjct: 135 IFTAETIRPKLERISILSGFKRMFSMQSTVTLIKSLLKIMLVGYVGYAYIKDNMPLVMKS 194 Query: 177 ISANPHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 S N Y F F++ L M+ + IA L + D + H + ++MSKQEIKDE KQ Sbjct: 195 FSLNDKQFSYMLFHFSINMALRMVYVIIA-LGIFDYVYQRHSYNKNIRMSKQEIKDEYKQ 253 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P IK++ K R +MM+ +A +IITNPTH+A+AL+Y + + DAP +VAKG Sbjct: 254 SEGDPQIKSKIKERQRQSAMRRMMQDLPKADVIITNPTHFAVALKYDEDKYDAPYVVAKG 313 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 Q+ IAKK+R+ A E +IPI E LAR+L+ ++ I S I P Y+AVA+++ I+ K Sbjct: 314 QDFIAKKIREKAKELDIPIVENKPLARALYSEIDIGSVITPQLYEAVAEVLAYIFSLK 371 >gi|311279222|ref|YP_003941453.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1] gi|308748417|gb|ADO48169.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1] Length = 387 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 107/367 (29%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF----------- 49 +++N ++KTEAP+ ++++ A EG P SRE + +L + L F Sbjct: 4 VADNSDSEDKTEAPTPQRLDKAREEGQIPRSRELTSLLILLVGVCVLWFGGESMARRLAA 63 Query: 50 FFSPGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 S G++ S+ +D +++L + + ++ L+T + + A +V P +L ++F Sbjct: 64 LLSSGLHFDHSIVNDPNLILGQIILLIKQAMLALLPLITGVVVVA--IVAPMMLGGLVFS 121 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 S + F +++ GIKR++S + +K+ +K +LVG + + Sbjct: 122 PKSLAFK-------------FDKLNPLPGIKRLFSAQSAAELLKAILKSVLVGCVAGTYV 168 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 ++ M+ IS +P + + +A V +++ L + + D+ W H KL+MS+ Sbjct: 169 WSHWPDMMRLISESPLAAMGNALNMVGLCAMLVALGVIPMVGFDVFWQIHSHIKKLRMSR 228 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQ+ G+P +K R + + R+ R +MM +A +I+TNPTHY++AL+Y++ + Sbjct: 229 QDIRDEFKQNEGDPHVKGRIRQMQRAAARRRMMGDVPKADVIVTNPTHYSVALQYVEGKM 288 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG LIA ++R+I EH +P+ E P LAR+L++ I IP Y AVA+++ Sbjct: 289 SAPKVVAKGAGLIALRIREIGQEHRVPVLEAPPLARALYRHAEIGQQIPGTLYAAVAEVL 348 Query: 347 YKIYHKK 353 ++ K Sbjct: 349 AWVWQLK 355 >gi|209963536|ref|YP_002296451.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW] gi|209957002|gb|ACI97638.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW] Length = 373 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/350 (32%), Positives = 188/350 (53%), Gaps = 8/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE KTE P+ +K+++A +G+ P+SRE S +LA +I + S +T Sbjct: 1 MSERPEDSQKTEEPTQRKLDEARRKGDVPVSREVSSMMLVLAGVILVGGLGSWMGGHLTD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL L+ + L+ + LL L+ +++P + + + + + Q V Sbjct: 61 DLLPLVENPGDFPLQAPADAFRLLAWLAGEIGLVLLPAAAILLAAVLLAAVGQNGIVFTT 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM----LDF 176 +KP +R+S G++R+ S+ LV F+K K+ VG + + L M L Sbjct: 121 ERLKPKLERISPIAGLRRLVSLRTLVEFLKGLAKVAAVGAALLVVLEPELHRMEALALTD 180 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++A P L + T ++L+ L+ + +LD+ W W + +M+ QE+K+E +Q+ Sbjct: 181 VAALPE--LLTSVLT--RLLVATLIASIAIALLDLVWQQFSWRRQQRMTLQELKEEFRQA 236 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + R R R +M RAT++ITNPTH+A+ALRY +E APV +AKG Sbjct: 237 EGDPHVKARISQLRRERARQRMFSDIPRATVVITNPTHFAVALRYDLSEAPAPVCLAKGM 296 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +L+A+++R+ A H +PI E P LAR+L K V I + P Y AVA++I Sbjct: 297 DLVARRIREAAMGHKVPIVENPPLARALHKSVEIGEEVQPEHYMAVAEVI 346 >gi|291278828|ref|YP_003495663.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans SSM1] gi|290753530|dbj|BAI79907.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans SSM1] Length = 359 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 122/364 (33%), Positives = 203/364 (55%), Gaps = 23/364 (6%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-------FSPG 54 +NDA +TE + ++ + A EGN P SRE S L +I+L F+ FS Sbjct: 3 EKNDA--ERTEEATPRRRQKAREEGNVPKSRELSTAIIFLISVIFLYFYTPILIDNFSKL 60 Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQ 113 I S + L+ + +L + +L L A LV+ GLL+ FG Sbjct: 61 ISHTLSKVGYTLSKSATVELFNFVFQFYLKVLFPLFAL-LVVAGLLVNVAQFGF------ 113 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 +++ ++P + R++ G++ ++S +LV +KS KI +VG + I + + Sbjct: 114 ---LISPKALEPKWDRLNPINGLQNLFSKRSLVELIKSIFKIFVVGFVAYIIVRGKIGVI 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ A+P S + V ++ I L I +++LD + Q+ LKM+KQE+K+E Sbjct: 171 LNLADADPFSSMVFFGKLVFELCFKIGLLILLMSILDFFYQKWQYEQDLKMTKQEVKEEF 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ G+P+I+ R +S+ R R +MME +A ++ITNPTHYA+A++Y ++ APV+VA Sbjct: 231 KQMEGDPLIRQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDINKDRAPVVVA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIY 350 KGQ L+A+K+++IA E+ + I E+P LAR+L+ QV I IP YKA+A+ ++YK+ Sbjct: 291 KGQRLMAQKIKEIAKENGVFIHEDPPLARTLYSQVEIGDEIPENLYKAIAEILAIVYKMK 350 Query: 351 HKKI 354 +K++ Sbjct: 351 NKRV 354 >gi|83858790|ref|ZP_00952312.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] gi|83853613|gb|EAP91465.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] Length = 358 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/353 (31%), Positives = 187/353 (52%), Gaps = 15/353 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ +K+ A EG+ P S+E S + ++ A L +L F +PG+ + + Sbjct: 1 MAEGEDKSEKTEEPTDRKLRQAREEGDVPKSQEVSGWFTLTAGL-AMLAFLAPGMVTNLA 59 Query: 61 D-LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI------PGLLLFMMFGIGSYLIQ 113 + L V LA + ++ + T + +A RLV+ LL+ +FG L+Q Sbjct: 60 EMLLVFLAQPHELAVDPTGAV----TLAAATAMRLVLVVGLAFATLLVAAIFG---NLVQ 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 + + P ++ +G+ R++ +NF K K+ +VG I L + Sbjct: 113 TGVMFTPKKIAPKLDKLDPIKGLTRMFGPEGWMNFFKGVGKMTIVGLAIAAVLWPRRNEL 172 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 P IL + +++I L+ + VLD + Q+ + KMS++EI+DE+ Sbjct: 173 AVLPGVAPIGILQEVYSAAIQLMIAALIAYTAIAVLDFLFQRKQYIDRHKMSRKEIRDEM 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G+P+I+ + + I + R + +MM A ++ITNPTHYA+AL Y Q AP+ VA Sbjct: 233 KDTEGDPMIRAKLRQIRQERAQRRMMARVPDAAVVITNPTHYAVALEYEQGRTPAPICVA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG + +A ++R +A EH+IPI E+P LAR LF V + IPP + AVA++I Sbjct: 293 KGTDEVALRIRALAEEHDIPIVEDPPLARGLFASVELEEVIPPEHFTAVAKII 345 >gi|313672722|ref|YP_004050833.1| flagellar biosynthetic protein flhb [Calditerrivibrio nitroreducens DSM 19672] gi|312939478|gb|ADR18670.1| flagellar biosynthetic protein FlhB [Calditerrivibrio nitroreducens DSM 19672] Length = 353 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 112/353 (31%), Positives = 199/353 (56%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M +ND+ ++TE + ++ + A+ EGN P SRE S + L ++ L F+ + + Sbjct: 1 MPDNDS--DRTEEATPRRKQKAIEEGNVPRSRELSTGITFLIAVLILYFYIPSMVEEFKT 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D + R ++ +++ LL + S +++ +P L + + I + ++Q V + Sbjct: 59 DFIRYFSMYNYRINKESAYL--LLIEVIKSMAKVTLPLLFVLVFVAILANIVQFGVVFSS 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ + R++ G R++S +L +KS +KI L+G + + T+L A+ Sbjct: 117 KVLELKWDRLNPISGFGRLFSKKSLFELLKSILKISLIGFAAFLIIKSKIPTILTLADAD 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S ++ + +V + + I + ++D + Q+Y LKM+KQE+K+E KQ G+P Sbjct: 177 AVSSIHFLGKLIYEVSFKLAIIIMVIALIDFLYQRWQYYEDLKMTKQEVKEEFKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +S+ R R +MME +A ++ITNPTHYA+A++Y ++ AP +VAKGQ LIA Sbjct: 237 LIKQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDMAKDRAPKVVAKGQRLIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA ++N+ I E+P LAR+L+ V I IP YKAVA+++ +Y K Sbjct: 297 LKIREIASKNNVLIHEDPPLARTLYSSVEIGEEIPENLYKAVAEILAMVYRLK 349 >gi|117923329|ref|YP_863946.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1] gi|117607085|gb|ABK42540.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1] Length = 355 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 116/355 (32%), Positives = 193/355 (54%), Gaps = 6/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D D+KTE P+SK++ D+ N+G S+E +LA L L + ++ Sbjct: 1 MADEDK-DSKTEEPTSKRLSDSRNKGQVVSSKEVPTALLMLAALAVFLVQGNELWQALQR 59 Query: 61 DLHVLLASATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 +H L+ +DI+ + + + + + P LF++ I S LIQ ++ Sbjct: 60 KMHFFLSGQIS---DDITPTGVSLIFNEIIRAVVMDLAPFFALFLVVAIISGLIQHGWLI 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + P F +V+ +G+KR++S+ +LV KS VKI ++ + +++ N +L Sbjct: 117 TFEPLMPKFSKVNPLQGLKRLFSVRSLVEAFKSIVKIFVISFAVYLAMRNNIDQILGLAD 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 F ++L + L + VLD + + L+MSKQEIKDE+KQ G Sbjct: 177 TTITEFTTLMFKDSLEILWRVTLAFLLIAVLDFIYQKFDYIKGLRMSKQEIKDEMKQMEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K R + I R + +MM+ +A +IITNPTHYA AL+Y + AP LVAKG+ L Sbjct: 237 DPLLKGRIRQIQRELAQSRMMQEVPKADVIITNPTHYACALQYTPGQMSAPKLVAKGKGL 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++R++A E+NIP E P LAR+L++ V + IPP +KAVA+++ ++ K Sbjct: 297 IAARIRELADENNIPRVENPPLARTLYRDVELEQFIPPELFKAVAEVLAYVFSLK 351 >gi|85716547|ref|ZP_01047517.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] gi|85696548|gb|EAQ34436.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 359 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/347 (32%), Positives = 191/347 (55%), Gaps = 4/347 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DAL G+ S+E + + +I + L F Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNAWFAIAGATLVLSTFAGSIGDGFRM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L+A++ Q + D ++ L + A+ L +P LLL M + ++Q V + Sbjct: 61 PLRNLIANSWQIR-TDGPGLLALAEQIGYCLAAALGVP-LLLLTMAAVAGNVVQHRFVWS 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP ++S+ G KRI+ + NF K K++ +G ++T L + + Sbjct: 119 GETLKPKLSKISVVSGAKRIFGKQAVANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRL 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P+++L ++L +++ +A + + D + Y QW+ + KMS +E+K+E KQS G+ Sbjct: 179 DPNALLGITKSLTLQLLGAVMVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK R + + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + I Sbjct: 239 PHIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSY-ERGMSAPVCVAKGVDNI 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A K+R+IA EH+IP+ E LAR+L+ V I+ IP Y AVA++I Sbjct: 298 ALKIREIAREHDIPVVENVPLARALYAAVEIDDEIPVEHYHAVAEII 344 >gi|75675330|ref|YP_317751.1| flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi Nb-255] gi|74420200|gb|ABA04399.1| Flagellar biosynthetic protein FlhB [Nitrobacter winogradskyi Nb-255] Length = 359 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 117/348 (33%), Positives = 195/348 (56%), Gaps = 6/348 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DAL G+ S+E + + ++A +L FS I S Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWF-VIAGATLVLSTFSGSIGSGFE 59 Query: 61 -DLHVLLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L L+A++ Q + D ++ L + A+ L +P LLL MM + +IQ V Sbjct: 60 LPLRNLIANSWQIR-TDGPGLLALAEQIGYRLAAALGVP-LLLLMMAAVAGNVIQHRFVW 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + +KP ++S+ G KRI+ NF K K++ +G ++T L + + Sbjct: 118 SGETLKPKLSKISMVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDAMVR 177 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 +P+++L ++L +++ +A + + D + Y QW+ + KMS +E+K+E KQS G Sbjct: 178 LDPNALLGITKSLTLQLLGAVIVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK R + + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + Sbjct: 238 DPHIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSY-ERGMSAPVCVAKGVDN 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA K+R+IA EH+IP+ E LAR+L+ V I+ +P Y AVA++I Sbjct: 297 IALKIREIAREHDIPVVENVPLARALYAAVEIDDEVPVEHYHAVAEII 344 >gi|227328329|ref|ZP_03832353.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 383 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 111/353 (31%), Positives = 188/353 (53%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTEAP+ +K E A EG P SRE +S+L + L + G ++ L Sbjct: 3 EDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWMGG-DAMAGRLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +++ + I +L H+ A+ +IP +L ++ + + L+ + + Sbjct: 59 RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAASALIPIMLGAVLVALSAPLLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + A +I++ + + D+ W KL+MSKQEI+DE KQS G+P Sbjct: 179 PIAAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351 >gi|288962718|ref|YP_003453012.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288914984|dbj|BAI76468.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 359 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 204/358 (56%), Gaps = 24/358 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + KTE P+ K++ +A +G+ P +R+ L S+++A + +L +PG+ S S Sbjct: 1 MAEQD-DEQKTEEPTEKRLREAAEKGDVPRARDVGLLSAMVAAWMIVLMA-APGVASNLS 58 Query: 61 DLHV-LLASATQRKLE----DISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 L + L+ + +++ D+ H + +L+ ++++ ++P L + ++ + S L Q Sbjct: 59 ALLLPLIENPDDIRIDGGAIDVIHSLAWLIGGVAVA----LLPVLGILLVGAVVSALGQG 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT------ISLTE 168 V+ + ++P + +S G KR+ LV F KS VK+ ++ I+ TE Sbjct: 115 PFVVASDRIRPKWSHLSPAAGWKRMAGRPALVEFAKSLVKLAIISAAAWRALAPYIAWTE 174 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + M ++ P+ +L + +++ + +A + VL W+ +W +L+MS QE Sbjct: 175 DTVGM--DVAGLPN-LLRDVTLRLLLAVLLATVLMAAVDVL---WNRLEWRRRLRMSPQE 228 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 IKDE KQ G+P K R + I RSR + +MM RAT++ITNPTH+A+AL Y + A Sbjct: 229 IKDEFKQIEGDPNAKARLRDIRRSRSKKRMMANVPRATVVITNPTHFAVALEYERGRTAA 288 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P+ +AKG +LIA ++R +A EH IPI E P LAR+L Q +++AIP Y+AVA++I Sbjct: 289 PICLAKGADLIALRIRALAQEHGIPIVENPPLARALHAQAEVDAAIPLQHYQAVAEVI 346 >gi|39936944|ref|NP_949220.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris CGA009] gi|192292772|ref|YP_001993377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris TIE-1] gi|39650801|emb|CAE29324.1| putative flagellar biosynthetic protein flhB [Rhodopseudomonas palustris CGA009] gi|192286521|gb|ACF02902.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris TIE-1] Length = 357 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/348 (32%), Positives = 194/348 (55%), Gaps = 8/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ D KTE P+ K+++DAL G+ S+E + + I + L F + + Sbjct: 1 MSEDS--DEKTEEPTQKRLDDALKRGDVVKSQEVNTWFLIAGATLVLSSFHESIGTGILA 58 Query: 61 DLHVLLASATQRKLEDISHIVFL--LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + L+ + +++ I L++ +L+A + IP LL+ ++ I S +IQ V Sbjct: 59 PMRNLIEKSWMLRVDGDGLIALAKSLSYATLAA--IGIP-LLMLVIVAIASNMIQHRLVF 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P F ++S EG KR++ + NF+K KI+ +G ++ L + + + Sbjct: 116 SAEALTPKFSKLSPLEGAKRLFGKQAMANFLKGLFKIVALGIVMVAVLYPEHDRLDALLK 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++L K+L ++ +A + V D + Y QW+ K KMS QEIK+E KQS G Sbjct: 176 MDVSALLGVTVALTLKLLGAVVAMLAFVAVGDYFFQYRQWHEKQKMSLQEIKEEFKQSEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK R + + R++ +MM A+++ITNPTH+++AL+Y + AP+ VAKG + Sbjct: 236 DPHIKGRLRQLRYQRMKKRMMAEVPNASVVITNPTHFSVALKY-ERGMSAPICVAKGVDA 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A K+R++A EH++PI E LAR+L+ V I+ IP Y+AVA++I Sbjct: 295 VAFKIREVAKEHDVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVI 342 >gi|152997434|ref|YP_001342269.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1] gi|150838358|gb|ABR72334.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1] Length = 378 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 194/360 (53%), Gaps = 19/360 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE+ SSKK++DA N+GN P S++ SS L ++ + G V Sbjct: 1 MAENEDGSEKTESASSKKLQDARNKGNLPRSKD---LSSALLLIVAAATIYGTGTLLV-R 56 Query: 61 DLHVLLA---SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 DL VL + + D+S +VF HL S ++ +LL + + ++ I + Sbjct: 57 DLAVLFDFNFLVERADVFDLSRMVF---HLYESVVAMMDSMVLLMAVLAVAG-IVGSIAL 112 Query: 118 LNLNH----VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF-- 171 LN + P ++S G+KR++S+ +LV KS K+ LVG I+++ L NYF Sbjct: 113 GGLNFSWEPLTPKLSKMSPIAGLKRMFSVQSLVELFKSIAKVTLVG-IVSV-LVVNYFLP 170 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 L + + H V + + L +A + +D+ + KLKM+KQE+KD Sbjct: 171 ETLGLTFQSIELAIAHGIDIVIWSFVFVTLALALIAAIDVPFQVWSHKEKLKMTKQEVKD 230 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E KQ G+P+++ R + + R ++MM A +IITNPTH+++AL+Y Q APVL Sbjct: 231 EYKQQEGDPLVRGRIRQMQRQAAMNRMMSDVPSADVIITNPTHFSVALKYDQAGGAAPVL 290 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + IA K+R++ ++IP+ + P+LAR+++ I IP +K VAQL+ +Y Sbjct: 291 LAKGGDFIALKIREVGNHYDIPVIQSPALARAIYHHTEIGDEIPQGLFKVVAQLLAYVYQ 350 >gi|148256775|ref|YP_001241360.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. BTAi1] gi|146408948|gb|ABQ37454.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. BTAi1] Length = 359 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 192/346 (55%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D ++KTE P+ K+++ AL G+ S+E + + I A + + F +V Sbjct: 1 MADEDDSEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMSTFSGSIGTAVLV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+A++ D + ++ L LS + + +L+ M+ I ++Q V + Sbjct: 61 PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+F ++S G KR++ NF K K++L+GT++ + L + + + Sbjct: 120 EPLKPNFGKISPLAGAKRLFGKQAAANFAKGIFKLVLLGTVMVMILWPERLRLESLLHMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L + ++ ++ +A + + D + Y QWY + KMS QE+K+E KQS G+P Sbjct: 180 VSELLGVTISLTKHLMGSVVALLALVAIGDYLFQYRQWYERQKMSVQEMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALAY-ERGMSAPVCVAKGVDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R+IA H+IPI E LAR+L+ V I++ IP Y AVA++I Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDAEIPVEHYHAVAEII 344 >gi|197104398|ref|YP_002129775.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum HLK1] gi|196477818|gb|ACG77346.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum HLK1] Length = 359 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 109/347 (31%), Positives = 198/347 (57%), Gaps = 4/347 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE + +K+E A ++G+ + + S F+++ A L + S Sbjct: 1 MSETEQ-SSKTEEATPRKLEKARSQGDVAKTMDLSSFATLAAGAAALAVTGGWLARKMAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + L V + H+ ++A+ + L + G+ ++L+Q + + Sbjct: 60 ELLPFVERPHAIDLHGAGG-VDIARHVIMAAAPALAIVLGATAICGVAAHLMQTGLIFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA- 179 +KP K++S G+K+I+ ++NLVNF+KS VK+I+ G + L + Y L ++A Sbjct: 119 EKMKPDLKKLSPIAGLKKIFGLDNLVNFLKSLVKVIVTGAL-GWWLLQPYIPQLAELAAL 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P +++ A +++++ + ++ D W ++ ++KM+++E+KD+ KQ G+ Sbjct: 178 DPLAMMPFAVDILKRLVFAVAALTLSIAGADWIWQKRRYLHRMKMTREEVKDDFKQVEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K RQK I +R R +MM A AT+++ NPTHYA+AL+Y +E AP+ VAKG + + Sbjct: 238 PHVKARQKQIRFTRARQRMMAAVPDATVVVMNPTHYAVALKYDASETPAPMCVAKGLDSL 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A K+R +A E +P+ E+P LAR+L+ V I+ IPP Y+AVA++I Sbjct: 298 ALKIRAVAEEAGVPVIEDPPLARALYAAVEIDDMIPPAHYEAVAKII 344 >gi|316932838|ref|YP_004107820.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris DX-1] gi|315600552|gb|ADU43087.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris DX-1] Length = 357 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/343 (31%), Positives = 186/343 (54%), Gaps = 2/343 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D KTE P+ KK++DAL G+ S+E + + I + L F + L Sbjct: 2 SDDSDEKTEEPTQKKLDDALKRGDVAKSQEVNTWFLIAGGTLVLSSFHGSIGAGILGPLR 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L+ + +++ I + + + + + +P L L M+ + LIQ V + + Sbjct: 62 SLIEKSWMLRVDGDGLIALTKSLMYATVAAIGVP-LFLVMITAVIGNLIQHRLVFSAEGL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P ++S +G KR++ L NF+K K++ +G ++ L + + ++ + + Sbjct: 121 TPKLSKLSPLQGAKRVFGKQALANFLKGLFKVVALGIVMVAVLYPEHDRLDALLTMDVAA 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 +L K+L ++ +A + V D + Y QW+ K KMS QEIKDE KQS G+P IK Sbjct: 181 LLGVTVTLTLKLLGAVVAMLAFVAVADYFFQYRQWHEKQKMSLQEIKDEYKQSEGDPHIK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + R++ +MM A+++ITNPTH+++AL+Y + AP+ VAKG + +A K+ Sbjct: 241 GRLRQLRYQRMKKRMMAEVPGASVVITNPTHFSVALKY-ERGMPAPICVAKGVDAVAFKI 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 R++A E+N+PI E LAR+L+ V I+ IP Y+AVA++I Sbjct: 300 REVAKENNVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVI 342 >gi|296101781|ref|YP_003611927.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056240|gb|ADF60978.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 382 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/367 (31%), Positives = 201/367 (54%), Gaps = 31/367 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILA-CLIY---------LLF 49 M+E + D+KTEAP+ ++E A EG P SRE SL I+ C+I+ L Sbjct: 1 MAEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILIVGVCIIWWGGESLARKLAG 58 Query: 50 FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 S G+ +S+ +D +++L+ Q + ++ L+T + L A L+ P +L ++F Sbjct: 59 MLSAGLRFDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVA--LISPVMLGGLVFS 116 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 S ++P F +++ GI +++S +K+ +K L+G+ L Sbjct: 117 TKS-------------LQPKFSKLNPLSGIAKMFSAQTGAELLKAILKAALMGSAAGFYL 163 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 N+ M+ IS +P + + +A V ++++L I + D+ + + + KL+MS+ Sbjct: 164 WHNWPEMMRLISESPLTAMSNALNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSR 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQ G+P +K R + + R+ R +MME +A +I+TNPTHY++AL+Y + + Sbjct: 224 QDIRDEYKQMEGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALQYDENKM 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG LIA ++R+I E+ +PI E P LAR+L++ I IP Y AVA+++ Sbjct: 284 SAPKVVAKGAGLIALRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343 Query: 347 YKIYHKK 353 ++ K Sbjct: 344 AWVWQLK 350 >gi|227112512|ref|ZP_03826168.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 383 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTEAP+ +K E A EG P SRE +S+L + L + G ++ L Sbjct: 3 EDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWMGG-EAMAGRLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +++ + I +L H+ A +IP LL ++ + + L+ + + Sbjct: 59 RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAVSALIPILLGAVLVALSAPLLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S +L K+ +K ++VG I T L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTFFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + A +I++ + + D+ W KL+MSKQEI+DE KQ+ G+P Sbjct: 179 PITAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQNEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351 >gi|223038713|ref|ZP_03609006.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267] gi|222880115|gb|EEF15203.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267] Length = 358 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/356 (30%), Positives = 198/356 (55%), Gaps = 30/356 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYSVTSDLHVL 65 KTE P+SKKIEDA +GN P S++ + F +I + + LL F + + + L Sbjct: 7 EKTEEPTSKKIEDARKDGNVPKSQDLAGFVTIAVAIFVVVALLGFIKDQFFMLYNYYQDL 66 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + RKL +F +T +++ + L+I P + + G+ + L+Q + ++ Sbjct: 67 IGQEFTRKL------LFSVTIITIFRTLLIILPIAVCIAIAGVFANLMQFGFIFTTKPLE 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P+ +++ +G+K ++S+ L++ +K +K+ V T+ + L FI PH++ Sbjct: 121 PNLNKINPLKGLKNLFSLKKLIDGIKMILKVTAVFTV-------GFLMFLSFIKELPHTL 173 Query: 185 LY----------HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + V+++++ I L VL + + Q++ L+MSKQEIKDE K Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRF---QYFRDLRMSKQEIKDEYK 230 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 Q G+P +K R + + R++MM+ +A +IITNPTHYA+ALRY +T+ APV++AK Sbjct: 231 QMEGDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAK 290 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 G + +A ++++I ++N+ I E P LAR L+K +N IP ++AVA+++ +Y Sbjct: 291 GVDFLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346 >gi|225569959|ref|ZP_03778984.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM 15053] gi|225161429|gb|EEG74048.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM 15053] Length = 353 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 196/353 (55%), Gaps = 16/353 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLH- 63 A D+KTE + KK D EGN I + + + + + L Y+L PGIY + + Sbjct: 2 AADSKTEKATPKKRRDERKEGN--IFQSSDVVNVVFVFLSFYILKLIFPGIYETSGNFMK 59 Query: 64 ---VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L S T + + + + LS +A+R V+P + M+ GI + IQ + Sbjct: 60 RFISLAGSITDLSGQSVGK--YGMEFLS-AAARTVLPFACICMVTGIVMHGIQTRFLFTS 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +P R+S +GIKRI+++ N + +K+ +K+I++ II L ++ ++ I Sbjct: 117 KNFRPKLNRISPLQGIKRIFALKNAIELVKNLLKVIVLVAIIYTLLKQD---AVNVIRTM 173 Query: 181 PHSILYHAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 SI A +T ++ MIL + A + LD + + + K+KMSKQE+K+E KQ+ Sbjct: 174 DMSISASAAYTFDMIISMILRVSMVFAVIAFLDYLFQWWDYERKIKMSKQEVKEEFKQTE 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK R + I + R R +MM+A A +II NPTH+A+AL Y +N+APV+VAKG + Sbjct: 234 GNPEIKGRIRDIQKQRARSRMMQAVPNADVIIRNPTHFAVALSYDTEKNNAPVVVAKGVD 293 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A ++ + E+++ + E+ LARSL+ + +N IP +Y AVA+++ +Y Sbjct: 294 ELALRIVRTGEENHVAVIEDRPLARSLYAETELNREIPSEYYGAVAEILVYVY 346 >gi|154253017|ref|YP_001413841.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans DS-1] gi|154156967|gb|ABS64184.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans DS-1] Length = 359 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 184/346 (53%), Gaps = 3/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D KTE P+ +K+E+A +G+ S+E S + ++ + S+ Sbjct: 1 MADQD-DSEKTEEPTHRKLEEAHKKGDLVKSQEVSTWFVMIGGATAIALMAPSTASSLMG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L V LA + D H+ + ++ SA +I L + + + +LIQ PV Sbjct: 60 SLTVFLAQPETIPM-DAEHLRRIWLNVGSSAFMSMIGPLAVLVGAALVGHLIQHAPVFTA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++KP ++S +EG++R++ +L+N K +K+ +VG++ + + + ++ Sbjct: 119 ENMKPKLSKISPKEGLQRLFGPKSLMNLAKGILKLTIVGSVSVLIIWPERDRLALMMTWE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L K+ ++ + + LD + QW K +MS QE+KDE KQ G+P Sbjct: 179 IAQLLPLVQMLALKMFAGVIAVMTVVAALDYLFERMQWMKKQRMSIQEVKDEYKQMEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + I R R +MM A AT+IITNPTHYA+AL+Y Q APV+VAKG + +A Sbjct: 239 TVKAKLRQIRAERGRKRMMAAVPTATVIITNPTHYAVALKYEQGMG-APVVVAKGVDAVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R++ EH +PI E P LAR+L V I+ I P YKAVA++I Sbjct: 298 FRIREVGQEHEVPIIENPPLARALHATVDIDQEIQPEHYKAVAEVI 343 >gi|288958052|ref|YP_003448393.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288910360|dbj|BAI71849.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 358 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 195/353 (55%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ +KTE P+ KK+++A +G ++REA+ + + A L+ L+ + + Sbjct: 1 MSEDADESSKTEDPTGKKLDEAHRQGQFAMTREAANWLMVAAMLVVLVSVLPGTMKGLVF 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+ + Q + L + L +P +LLF++ G+ + + Q ++ Sbjct: 61 RLNYYFENLDQFTFDRAGVGALLFRVMRDVMWALWLP-ILLFVVAGVMATIGQTGFHVSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+ ++ N V +KS VK+ +VG + ++L + + +I + Sbjct: 120 QLIEPKFSKLNPLPGLMNMFKANQAVELLKSIVKLAVVGGVAYMALRPMFGGIETYIGID 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L ++LI +L+ + + D W Q+ ++KM+KQE+KDE KQ G+P Sbjct: 180 LITMLSQMDGLAHRLLIWVLVVLTFIAAGDFLWQKKQFDKQMKMTKQEVKDEHKQQEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R + I R R +MM A A +++TNPTH+A+AL+Y ++ AP+++AKG + +A Sbjct: 240 VVKGRIRQIRFERARKRMMAAVPDADVVVTNPTHFAVALKYDPSQMGAPLVLAKGVDQVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +N+P+ E P LAR+L+ I+ +P Y+AVA++I ++ K Sbjct: 300 FKIREIAESNNVPVIENPPLARALYAACDIDEEVPSEHYRAVAEVITYVFKLK 352 >gi|329849682|ref|ZP_08264528.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum C19] gi|328841593|gb|EGF91163.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum C19] Length = 358 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 15/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASL---FSSILACLIYLLFFFSPGIYS 57 M+E ++KTE S+KK+ A +G+ +++ A L S I AC + L+ P + S Sbjct: 1 MAEEPDSEDKTEEASAKKLSQAREKGD--VAKSADLPQALSLIGACAVIALY--GPSLSS 56 Query: 58 -VTSDLHVLLASATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 + DL LA Q LE + ++ + + +VI + + ++ GIG +++Q Sbjct: 57 DLVDDLIPFLAHPQQLLGSLEGDGGVT-IMREMVFAFLPIVIIVMGVTLLLGIGGHVMQT 115 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + +KPS +++ G KR++ + L+ F K+ VK+I+ G I+ L + ++ Sbjct: 116 GLMFTTEKLKPSLTKLNPMSGFKRLFGFDALIQFAKTVVKLIITGAIVWQVLKGKLYEIM 175 Query: 175 DFISANPHSILYHAF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 A+P IL +A F + + I LFI D W ++ ++KMSKQE K+E Sbjct: 176 ALAKASPLLILPYAMDVFVALAIAVCIFLFIEGAA--DYMWQRFRFMQRMKMSKQEQKEE 233 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 KQ G+P IK + + I + R +MM AT++ITNPTHYA+AL++ + AP+ V Sbjct: 234 YKQMEGDPHIKAKLRQIRMEKSRRRMMSNVKDATVVITNPTHYAVALQFEMGQMQAPLCV 293 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+ A +HN+PI E+ LAR+L+ + ++ IP + AVAQ+I + K Sbjct: 294 AKGVDTLALKIREEAGKHNVPIVEDVPLARALYAAIDVDETIPEEHFAAVAQVISFVLAK 353 Query: 353 K 353 K Sbjct: 354 K 354 >gi|291613025|ref|YP_003523182.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus ES-1] gi|291583137|gb|ADE10795.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus ES-1] Length = 381 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 118/365 (32%), Positives = 200/365 (54%), Gaps = 29/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+PS ++++ A EG SRE S F+ ++A GI+ + Sbjct: 1 MAEQDSDLEKTESPSQRRLDQAREEGQVARSRELSTFAVLMAG--------GAGIWLMGG 52 Query: 61 DLHVLLASATQRKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L L S + L + + F L LS+S + +P L L + S L+ Sbjct: 53 MLSQQLISLIREGLTLDTGLAFHSELLVPRLHDLSMSTLLVFLPLLGLLLAVAAFSPLLL 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 + L ++P+F +++ GI R++S N+L+ K+ K ++VG I + + N + Sbjct: 113 NGWLFTLKPLQPNFGKLNPITGIGRMFSTNSLMELAKAIAKAVVVGGIGALVIWHNKNAV 172 Query: 174 LDFIS-----ANPH--SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 L +S A PH S+++ +F V L++I+ +D+ + + KLKM+K Sbjct: 173 LLLVSEPIASAIPHLGSLVWGSFAAVMGGLLLIV-------AVDVPFQLWEHNKKLKMTK 225 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 +E++ E K++ G+P +K R +S+ R R +MM +A +++TNPTHY++AL+Y ++ Sbjct: 226 EEVRQESKETEGDPQVKARVRSMQREMARRRMMAEIPKADVVVTNPTHYSVALKYSDSKM 285 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 APV+VAKG +L+A K+++IA EHN+PI E P LAR+L K + AIP Y AVA+++ Sbjct: 286 RAPVVVAKGSHLMAAKIKEIAKEHNVPILEAPPLARALHKHCELGEAIPEALYTAVAEVL 345 Query: 347 YKIYH 351 +Y Sbjct: 346 AYVYQ 350 >gi|254691439|ref|ZP_05154693.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str. 870] Length = 210 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 137/207 (66%) Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 F+KS K++ I+ + + D ++ +P ++ V ++L+ +L IA + Sbjct: 1 EFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATDPGALPEFLRKNVVRLLVANVLAIAAI 60 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 D+ WS W +L+M++QE+KDE+KQS G+P++K+R +S+ R R R +M+ A AT Sbjct: 61 AGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGRDRARRRMINAVPTAT 120 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 +I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+IP+FE+ LAR+L+K Sbjct: 121 LIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFEDVQLARALYK 180 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 QV ++ I P FYKAVA+LI I ++ Sbjct: 181 QVNVDQMIAPEFYKAVAELIRIINTRR 207 >gi|146341890|ref|YP_001206938.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. ORS278] gi|146194696|emb|CAL78721.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. ORS278] Length = 359 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 188/346 (54%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE P+ K+++ AL G+ S+E + + I A + + F +V Sbjct: 1 MAEEGDTEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMTTFSGSIGTAVLV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+A++ D + ++ L LS + + +L+ M+ I ++Q V + Sbjct: 61 PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KPS ++S G KR++ NF K K++L+GT++ + L + + + Sbjct: 120 EPLKPSLSKISPLSGAKRLFGKQAAANFAKGLFKLVLLGTVMVMILWPERLRLEALLHMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L ++ ++ +A + + D + Y QWY + KMS QE+K+E KQS G+P Sbjct: 180 VAELLGVTMSLTTHLMGSVVALLALVAIGDYLFQYRQWYERQKMSLQEMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALSY-ERGMQAPVCVAKGVDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R+IA H+IPI E LAR+L+ V I+ IP Y AVA++I Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDEEIPVEHYHAVAEII 344 >gi|260598364|ref|YP_003210935.1| flagellar biosynthetic protein flhB [Cronobacter turicensis z3032] gi|260217541|emb|CBA31747.1| Flagellar biosynthetic protein flhB [Cronobacter turicensis z3032] Length = 392 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 116/360 (32%), Positives = 189/360 (52%), Gaps = 21/360 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-------IY 56 +D D+KTEAP+ + E A EG P SRE +S+L L+ + + G Sbjct: 12 SDDSDDKTEAPTPHRREKAREEGQIPRSRE---LTSMLMLLVGVAVIWMGGSLLARQLAA 68 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQ 113 ++ LH + KL + I FL+ +L A +I G+++ +F +G L Sbjct: 69 MLSHGLHFDHSIINDPKLV-VGQISFLIKQ-ALVALVPLIMGVVIVALFAPMLLGGLL-- 124 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 N V ++++ GIKRI+S +L +K+ +K +LVG + L N+ M Sbjct: 125 ----FNTKAVAFKPEKLNPLPGIKRIFSSQSLAELLKAVLKSVLVGIVTGCFLWYNWPDM 180 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 + IS +P S + +A V I+I++ + + D+ W KL+MS+Q+I+DE Sbjct: 181 MRLISESPISAMRNAMNLVALCCILIVMGLVPMVGFDVFWQIVSHTKKLRMSRQDIRDEF 240 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K G+P +K R + R R +MM +A +I+TNPTHY++AL+Y + + AP +VA Sbjct: 241 KNQEGDPHVKGRIRQQQREAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVA 300 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG L+A ++R+I EH IP+ E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 301 KGAGLVALRIREIGNEHRIPMLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 360 >gi|302384124|ref|YP_003819947.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides ATCC 15264] gi|302194752|gb|ADL02324.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides ATCC 15264] Length = 362 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 111/361 (30%), Positives = 194/361 (53%), Gaps = 16/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF--------FS 52 M+E+ P++KTE S +K+E+A +G+ S + + S+L C+ +L + Sbjct: 1 MAEDADPESKTEEASPQKLEEARKKGDVAKSADVAPALSLL-CVTGVLIMGGGYFATNMA 59 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 G + H +L +I V + L A +L ++ G+G + Sbjct: 60 QGFLPFIAAPHAMLGGLEAGGGVEIGARVLWVVAPFLGAV------MLAAILGGVGGNVA 113 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q V++ +KP + +VS G KRI+ + L+ F ++ +K++ VG I + L + Sbjct: 114 QSGLVISAEKMKPKWSKVSPMAGFKRIFGPDGLMQFAQTLLKLVAVGVICWMVLKPHARQ 173 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + +P +IL A + ++ L+F+A D W ++ +++MSK+E+K+E Sbjct: 174 FETMAAMSPLTILPLARDLMIALMSSALVFLALTAGGDFVWQKMRFAKRMRMSKEELKEE 233 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 KQS G+P IK + K I R R +MM+ +AT+I+TNPTHY++ALRY + + APV V Sbjct: 234 YKQSEGDPHIKAKLKQIRMQRSRQRMMQNVPKATVIVTNPTHYSVALRY-EAGDAAPVCV 292 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A ++R++A EH++PI E LAR+L+ V I+ IP ++A A++I + K Sbjct: 293 AKGVDAVAMRIREVAREHDVPIVENVPLARALYAAVDIDETIPREHFEAAARVIGFVMKK 352 Query: 353 K 353 + Sbjct: 353 R 353 >gi|86750881|ref|YP_487377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris HaA2] gi|86573909|gb|ABD08466.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris HaA2] Length = 358 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 185/343 (53%), Gaps = 2/343 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ K E P+ K+++DAL +G+ S+E + + +I + L F +T + Sbjct: 3 DDSDQEKQEEPTQKRLDDALEKGDVAKSQEVNTWFAIAGATLLLSSFSGSIGSGITGPMR 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L+ + ++ + + + L + S L +P L L + IGS LIQ V + + Sbjct: 63 TLIEKSWMLPVDGVGLLALTKSLLLMLISVLGVP-LGLLALVAIGSNLIQHRLVFSTEGL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP F ++S EG KR++ L NF+K K+I +G ++ L + + + S Sbjct: 122 KPKFSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMDVVS 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 +L K++ + +A + D + YH W + KMS QE+KDE KQS G+P IK Sbjct: 182 LLGVTVSLTLKLMGTVAAVLAFVAAGDFFFQYHTWRERQKMSLQEVKDEYKQSEGDPHIK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + I R++ +MM A A+++ITNPTH+++AL+Y + AP+ VAKG + IA K+ Sbjct: 242 GRIRQIRYQRMKKRMMAAVPGASVVITNPTHFSVALKY-ERGMQAPICVAKGADAIAFKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 R++A +++PI E LAR+LF V ++ IP Y AVA++I Sbjct: 301 REVAKANDVPIVENVPLARALFATVEVDEEIPVEHYHAVAEVI 343 >gi|78485088|ref|YP_391013.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena XCL-2] gi|78363374|gb|ABB41339.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena XCL-2] Length = 381 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 186/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ K+E PS KK+ +A +G P S+E + L ++L +FF + Sbjct: 1 MAENEDGTEKSEEPSEKKLREAREKGQVPRSKELTTLLMTLGAAVFL-YFFGAQMMQDFE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + S + D L+ L + + +++P LLL ++ + S ++ + Sbjct: 60 TLFIKGLSFDRSHAYDFQMATNLVLGLVVHSIYMMVPFLLLMVLIAVVSPMLLGGWNFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIK+++S+N L+ K+F K LV + L +Y ++ Sbjct: 120 QALAPKISKLNPVSGIKKMFSMNALMELFKAFAKFTLVSVVAGFFLWYSYEEIISIGIEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L HA + + I + L + + +D+ + HQ ++LKM+KQE+K+E KQ G+P Sbjct: 180 PKQALAHAGQLIVEAFIFVSLSLILIAAIDVPFQIHQHVTQLKMTKQEVKEEHKQQEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM+ A ++ITNPTH+A+AL+Y E P+++A G + +A Sbjct: 240 EVKGRIRQLQREMSQKRMMQKVPEADVVITNPTHFAVALKYAPDEMAEPMVLALGSDFMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R +A EHNIP+ E P LAR+L+ ++ IP ++AVA ++ +Y Sbjct: 300 AQIRTLAKEHNIPLIEAPPLARALYYNAEVDRPIPYELFRAVAAILAYVYQ 350 >gi|255321961|ref|ZP_05363111.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277] gi|255301065|gb|EET80332.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277] Length = 358 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/356 (30%), Positives = 197/356 (55%), Gaps = 30/356 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYSVTSDLHVL 65 KTE P+SKKIEDA +GN P S++ + F ++ + + LL F +++ + L Sbjct: 7 EKTEEPTSKKIEDARKDGNVPKSQDLAGFVTLAVAIFVVVALLGFIGDQFFTLYNYYQSL 66 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + RKL +F + ++ + L+I P + + G+ + L+Q + ++ Sbjct: 67 IGQEFTRKL------LFSVAITTIFRTLLIILPIAVCIAIAGVVANLMQFGFIFTTKPLE 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P+ +++ +G+K ++S+ L++ +K +K+ V T+ + L FI PH++ Sbjct: 121 PNLNKINPIKGLKNLFSLKKLIDGIKMVLKVTAVFTV-------GFLMFLSFIKELPHTL 173 Query: 185 LY----------HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + V+++++ I L VL + + Q++ L+MSKQEIKDE K Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRF---QYFRDLRMSKQEIKDEYK 230 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 Q G+P +K R + + R++MM+ +A +IITNPTHYA+ALRY +T+ APV++AK Sbjct: 231 QMEGDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAK 290 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 G + +A ++++I ++N+ I E P LAR L+K +N IP ++AVA+++ +Y Sbjct: 291 GVDFLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346 >gi|148269163|ref|YP_001243623.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1] gi|281411461|ref|YP_003345540.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila RKU-10] gi|147734707|gb|ABQ46047.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1] gi|281372564|gb|ADA66126.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila RKU-10] Length = 374 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 191/350 (54%), Gaps = 10/350 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +TE + +K EG AP+SRE ++ + L + L F G+ +T D+ Sbjct: 29 AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPG--LLLFMMFGIGSYLIQRIPVLNLNHV 123 L+ + ED+ L+ ++ L+I G ++ M+ G+ +Q + + Sbjct: 89 LSF---EETEDL-----LVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKAL 140 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ N + Sbjct: 141 KPDLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVND 200 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK Sbjct: 201 AFANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIK 260 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 RQ+ + +R +MME +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ Sbjct: 261 RRQRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKI 320 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK Sbjct: 321 IEIAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370 >gi|222824323|ref|YP_002575897.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100] gi|222539544|gb|ACM64645.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100] Length = 358 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/357 (31%), Positives = 205/357 (57%), Gaps = 18/357 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ +D KTE P+SKKIEDA EGN P S++AS + ++ ++ +LF P + S Sbjct: 1 MAADD--QEKTEEPTSKKIEDARKEGNVPKSQDASAVAVLIVAVVVVLFTL-PFMGERIS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+ S +L D+ + ++ + +V+P L+ M+ G+ L+Q + Sbjct: 58 GLYRFYQSFIGIEL-DLKILQKIIIKTMIEMFIMVLPITLVIMIAGVLGNLMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F +++ G+K ++S+ ++ +K +K VG + I+ + +L F+ Sbjct: 117 KPITPNFNKINPLNGLKNLFSLKKIIEALKITLK---VGVVFGIA----FVFLLQFMQEL 169 Query: 181 PHSILYHAF-----FTVRKVLIMILLFIATLTV--LDIGWSYHQWYSKLKMSKQEIKDEI 233 P LY + + +++ ++ IA L + LD+ +Q++ L+MSKQEIKDE Sbjct: 170 PRVELYTIYPQLLWLRDKAIILAAVVIIAFLLIGFLDVLIVRYQYFKNLRMSKQEIKDEY 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ+ G+P++K+R + + R +M++ + A ++ITNPTHYA+ALRY ++ AP ++A Sbjct: 230 KQTEGDPLVKSRIRRLQMEAARRRMVQDVASADVVITNPTHYAVALRYDSSQEAAPKVLA 289 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 KG + +A +++ +AYE+N+ I+E P LAR L+K +N IPP +KAVA+++ +Y Sbjct: 290 KGVDFLALRIKDMAYEYNVMIYENPPLARELYKACEVNDLIPPELFKAVAEVLSFVY 346 >gi|15643671|ref|NP_228717.1| flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8] gi|4981445|gb|AAD35990.1|AE001755_13 flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8] Length = 374 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 193/350 (55%), Gaps = 10/350 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +TE + +K EG AP+SRE ++ + L + L F G+ +T D+ V Sbjct: 29 AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQVF 88 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPG--LLLFMMFGIGSYLIQRIPVLNLNHV 123 L+ + ED+ L+ +++ L+I G ++ M+ G+ +Q + + Sbjct: 89 LSF---EETEDL-----LMNAVNIFKDVLLIVGAFVVFSMVAGVMIGALQTRFLFAPKAL 140 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ + + Sbjct: 141 KPDLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMSVND 200 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK Sbjct: 201 AFANFWDITSEITLKSGMILLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIK 260 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 RQ+ + +R +M+E +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ Sbjct: 261 RRQRQMMYDILRRRMLEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLAFKI 320 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK Sbjct: 321 IEIAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYAKK 370 >gi|170287825|ref|YP_001738063.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2] gi|170175328|gb|ACB08380.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2] Length = 374 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 191/350 (54%), Gaps = 10/350 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +TE + +K EG AP+SRE ++ + L + L F G+ +T D+ Sbjct: 29 AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPG--LLLFMMFGIGSYLIQRIPVLNLNHV 123 L+ + ED+ L+ ++ L+I G ++ M+ G+ +Q + + Sbjct: 89 LSF---EETEDL-----LVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKAL 140 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ N + Sbjct: 141 KPDLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVND 200 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK Sbjct: 201 AFANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEMKDELKEVEGNPEIK 260 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 RQ+ + +R +MME +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ Sbjct: 261 RRQRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKI 320 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK Sbjct: 321 IEIAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370 >gi|50120630|ref|YP_049797.1| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum SCRI1043] gi|49611156|emb|CAG74602.1| flagellar biosynthetic protein [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 184/353 (52%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTEAP+ +K E A EG P SRE +S+L + L + G + L Sbjct: 3 EDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWIGGDV-MAGRLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +++ + I +L H+ A ++P +L ++ + + ++ + + Sbjct: 59 RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAVSALVPIMLGAVLVALSAPMLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S L K+ +K ++VG I T+ L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSSQALAELFKAILKSVIVGIISTLFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A +I++ + + D+ W KL+M+KQEI+DE KQS G+P Sbjct: 179 PIAALGDALELAVMCGFLIIIGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351 >gi|118475475|ref|YP_891544.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp. fetus 82-40] gi|118414701|gb|ABK83121.1| flagellar biosynthetic protein FlhB [Campylobacter fetus subsp. fetus 82-40] Length = 357 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 198/355 (55%), Gaps = 28/355 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTSDLHVL 65 K E P+ KK+EDA N+GN S++ S F ++L A L+ L+ F + ++ L Sbjct: 6 EKIEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVNLYLYYQGL 65 Query: 66 LASATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + R+L F +T H L +++P + M+ GI S ++Q + + + Sbjct: 66 IGVEITREL------FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTVEPIM 119 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITISLTENYFTMLDFISANPHS 183 P+F ++ +GI ++S+ L++ VKIIL V + ++ ++ L F+ PH+ Sbjct: 120 PNFSKIDPIKGIANLFSLKKLIDA----VKIILKVSAVFGVA----FYFFLQFVKELPHT 171 Query: 184 ILYHAF----FTVRKVLI----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 I + F + K+LI M+LLF+ + + D+ +Q++ L+MSKQE+KDE KQ Sbjct: 172 IFFSMFNQLLWLKEKMLILAGVMLLLFL-IIAIADVFIVRYQYFKGLRMSKQEVKDEFKQ 230 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P +K R + + R +MM+ A ++ITNPTHYA+ALRY + + APV++AKG Sbjct: 231 MEGDPKVKGRIRQLQMQAARKRMMQNIPTADVVITNPTHYAVALRYDKEKEKAPVVLAKG 290 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + +A ++RKIA E+ I I E P LAR L+K I+ IP ++AVA+++ +Y Sbjct: 291 VDHLALRIRKIATENGIQIVENPPLARELYKLCDIDDQIPGNLFQAVAEVLSFVY 345 >gi|261340264|ref|ZP_05968122.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] gi|288317353|gb|EFC56291.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] Length = 382 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/367 (29%), Positives = 201/367 (54%), Gaps = 31/367 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLF 49 M+E++ D+KTEAP+ ++E A EG P SRE + L + C+I+ L Sbjct: 1 MAEDN--DDKTEAPTPHRLEKAREEGQVPRSRELTSLLILVVGVCIIWWGGESFARRLAG 58 Query: 50 FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 S G+ +S+ +D +++L+ + LL ++ A +I G++L + Sbjct: 59 MLSAGLRFDHSMVNDPNLILSQ------------IILLVKNAMIALLPLISGVVLVAL-- 104 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 + ++ + V + ++P F +++ GI +++S +K+ +K L+G+ L Sbjct: 105 VSPVMLGGL-VFSGKSLQPKFSKLNPLPGIAKMFSAQTGAELVKAILKSALMGSTAGFFL 163 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 ++ M+ IS +P + + +A V ++++L I + D+ + + + KL+MS+ Sbjct: 164 WHHWPEMMRLISESPFNAMNNAMNLVGLCALLVVLSIIPMVGFDVIFQMYSHFKKLRMSR 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQ G+P +K R + + R+ R +MME +A +I+TNPTHY++ALRY + + Sbjct: 224 QDIRDEYKQMEGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKM 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG LIA ++R+I E+ +PI E P LAR+L++ I IP Y AVA+++ Sbjct: 284 SAPKVVAKGAGLIALRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343 Query: 347 YKIYHKK 353 ++ K Sbjct: 344 AWVWQLK 350 >gi|302037621|ref|YP_003797943.1| flagellar biosynthetic protein FlhB [Candidatus Nitrospira defluvii] gi|300605685|emb|CBK42018.1| Flagellar biosynthetic protein FlhB, export component [Candidatus Nitrospira defluvii] Length = 360 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 102/352 (28%), Positives = 188/352 (53%), Gaps = 7/352 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLH 63 D+ N+TE + K+ DA +G +SR+A++ +L L L++ +PGI + L Sbjct: 3 DSGQNRTEQATPKRKADARAKGQVALSRDAAMAVGLLGSL-GALYWMTPGILNGLRESLQ 61 Query: 64 VLLA----SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + L+ +TQR L + H+ +L + + ++ P + + G+G+ LIQ + Sbjct: 62 LWLSKSMEESTQRTL-SLDHLHLILRQVGVDVFVMLGPVIAGIAVVGVGANLIQTGFLWK 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++ F R+S G R++S+ + +KS++KI +G + +++ ++ Sbjct: 121 RDALQLEFSRISPMAGFSRLFSVRSFSELVKSWLKIFAIGGVGYLTIKQDMVLFSPLTQF 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 ++L + K +M+ + LD G+ +W L+MS+ EIK+E + + G+ Sbjct: 181 GMETLLPTVGWATFKAALMMGGAALVIGGLDYGFQRFEWERDLRMSRDEIKEESRAAEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K + +S R R +MM A +A +IITNPTH A+AL+Y AP++VAKG + Sbjct: 241 PGLKAKIRSTQREMSRKRMMAAVPKADVIITNPTHLAVALKYDSKAMGAPIVVAKGAGYV 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A+K+R+I +H + I E +AR+LFK V + +P Y+AVA+++ +Y Sbjct: 301 AEKIREIGRQHGVMIVENKLVARTLFKLVEVGREVPEDLYRAVAEILAFVYR 352 >gi|168238548|ref|ZP_02663606.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734592|ref|YP_002114950.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204931016|ref|ZP_03221842.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710094|gb|ACF89315.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288673|gb|EDY28048.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320060|gb|EDZ05265.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616914|gb|EFY13822.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618152|gb|EFY15044.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625823|gb|EFY22642.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626275|gb|EFY23085.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632689|gb|EFY29434.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639033|gb|EFY35726.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640473|gb|EFY37126.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646018|gb|EFY42535.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649560|gb|EFY45992.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655468|gb|EFY51776.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660247|gb|EFY56485.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662928|gb|EFY59135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668113|gb|EFY64272.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674127|gb|EFY70221.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675519|gb|EFY71593.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683067|gb|EFY79083.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686761|gb|EFY82739.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195348|gb|EFZ80528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199240|gb|EFZ84335.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204035|gb|EFZ89050.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207496|gb|EFZ92444.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217480|gb|EGA02199.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221971|gb|EGA06361.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224718|gb|EGA08987.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231502|gb|EGA15615.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235944|gb|EGA20023.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240514|gb|EGA24557.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245406|gb|EGA29406.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250177|gb|EGA34069.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253625|gb|EGA37453.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255054|gb|EGA38842.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260286|gb|EGA43907.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266878|gb|EGA50364.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270708|gb|EGA54149.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 383 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L N+ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHNWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|121613536|ref|YP_001000045.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni 81-176] gi|87250257|gb|EAQ73215.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 81-176] Length = 368 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 115/364 (31%), Positives = 200/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + LF S Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A ++ I ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY A+ R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVTQLAWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|27380920|ref|NP_772449.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA 110] gi|27354086|dbj|BAC51074.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 359 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 108/346 (31%), Positives = 191/346 (55%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ P+++TE P+ K++++AL G+ S+E + + I + + F + + Sbjct: 1 MAEDNDPESQTEDPTQKRLDEALERGDVAKSQEINTWFMIAGGTLVVSTFSGSVGSGLVT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + LLA++ K D ++ LL + + + LL+ ++ + ++Q V + Sbjct: 61 PMRNLLANSWMIKT-DGRALLALLQQIEFAVLAAIGVPLLMLVLAAVAGNMLQHRLVWSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F ++S G KRI+ NF+K K+I++G ++ L M + + Sbjct: 120 ESLKPKFSKLSPAAGFKRIFGKQAAANFLKGLGKLIVLGVVMGTILWPERHRMEAMVRLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++L +L ++ +A + + D + Y W+ + KMS QEIK+E KQS G+P Sbjct: 180 PAAMLGATTSLTIHLLGAVVAALAIIAIGDYFFQYRSWFQRQKMSLQEIKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + + R + +MM A +A++IITNPTH+++AL Y + AP+ VAKG + +A Sbjct: 240 HIKGKIRQLRQQRAKKRMMAAVPKASVIITNPTHFSVALSY-ERGMQAPICVAKGVDNLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R+IA EH+IPI E LAR+L+ V I+ IP Y AVA++I Sbjct: 299 FKIREIAREHDIPIVENVPLARALYATVEIDQEIPTEHYHAVAEVI 344 >gi|254497495|ref|ZP_05110288.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12] gi|254353310|gb|EET12052.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12] Length = 378 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 108/361 (29%), Positives = 193/361 (53%), Gaps = 22/361 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + D KTE PS+K++++A +G S++ F++ +A L F + G + Sbjct: 1 MSEQNN-DEKTEQPSAKRLKEARQKGQVARSKD---FNTTVA-----LLFTAVGFLAFGK 51 Query: 61 DLHVLLASATQRKLEDISHIV----------FLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 L LA + E ++++ F L + A ++P L+ + + + Sbjct: 52 QLSDQLALMMRHSFEFDTNVIITPVVSLERLFFLAKMGFWA---LVPILIFIFVVSLAAP 108 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 L+ V + V+P F R+++ +G+KR+ S+ N V +KSF K +LV ++ I L Sbjct: 109 LVMGGWVFSAKVVQPKFSRLNVFQGLKRMVSLKNFVEMIKSFFKFVLVASVAVIVLKSQI 168 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 T+L + + V K +++ + + +LD+ + ++ +KM+KQE++ Sbjct: 169 PTLLSLAHVPIETAIGSGALIVVKCFVLVAASLLLIAMLDVPFQLYEHNKNMKMTKQELR 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE K++ G P +KN + + + +MM A +++TNPTHYA+A+RY + N APV Sbjct: 229 DEYKETEGKPEVKNAIRRAQQEIAKRRMMTEIPTANVVLTNPTHYAVAIRYKEKGNKAPV 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG++L+A ++ K+A EH IPI P LAR+L+ +N+ IP Y AVAQ++ ++ Sbjct: 289 VVAKGKDLVAFQINKVAKEHEIPIISVPPLARALYFSTKLNAEIPRGLYIAVAQVLAYVF 348 Query: 351 H 351 Sbjct: 349 Q 349 >gi|92116950|ref|YP_576679.1| flagellar biosynthesis protein FlhB [Nitrobacter hamburgensis X14] gi|91799844|gb|ABE62219.1| flagellar biosynthetic protein FlhB [Nitrobacter hamburgensis X14] Length = 359 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DAL G+ S+E + + I + L F V Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLATFGGSVGGGVEM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+A++ Q + D ++ L L + + LL+ M+ I ++Q V + Sbjct: 61 PLRNLIANSWQIRT-DGPGLLALAQQLEYILAAALGLPLLMLMLAAIAGNVVQHRFVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++S+ G KRI+ NF K K++ +G ++T L + + + Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDALVRLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P++IL ++L ++ +A + + D + Y QW+ + KMS +E+K+E KQS G+P Sbjct: 180 PNAILPTTTTLTLQLLGAVVAMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + +R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HIKARIRQLRHARMKKRMMAAVPKASVIITNPTHYSVALSY-ERGMSAPVCVAKGMDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R+IA EH+IPI E LAR+L+ V I+ IP Y AVA++I Sbjct: 299 LKIREIAREHDIPIVENVPLARALYATVKIDDEIPVEHYHAVAEII 344 >gi|237731916|ref|ZP_04562397.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2] gi|226907455|gb|EEH93373.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2] Length = 383 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 201/367 (54%), Gaps = 30/367 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLF 49 M+E ++ D+KTEAP+ ++E A EG P S+E + L + C+I+ L Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59 Query: 50 FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 S G+ +S+ +D +++L+ + + ++ L+T + L A L+ P +L ++F Sbjct: 60 MLSAGLRFDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVA--LISPVMLGGLIFS 117 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 S ++P F +++ GIKR++S +K+ +K LVG++ L Sbjct: 118 GKS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYL 164 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 N+ M+ ++ +P + + +A V ++++L + + D+ + + KL+MS+ Sbjct: 165 WHNWPAMMRLMAESPITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHVKKLRMSR 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQS G+P +K + + + R+ + +MM +A +I+TNPTHY++AL+Y + + Sbjct: 225 QDIRDEFKQSEGDPHVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALKYDENKM 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG L+A ++R+I EH +P E P LAR+L++ I IP Y AVA+++ Sbjct: 285 SAPKVVAKGAGLVALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 344 Query: 347 YKIYHKK 353 ++ K Sbjct: 345 AWVWQLK 351 >gi|46200838|ref|ZP_00207865.1| COG1377: Flagellar biosynthesis pathway, component FlhB [Magnetospirillum magnetotacticum MS-1] Length = 324 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 94/266 (35%), Positives = 163/266 (61%), Gaps = 4/266 (1%) Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 LL+ +++ ++++ +++ ++ + S + Q + + + F ++S +GI RI+S Sbjct: 49 LLSMITMDMLKILVLPMMMLVVLALVSAMGQSGLMFLPDKLTMDFSKLSPMKGITRIFSG 108 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 NLV F KS K+ +G +I + L + + + ++L + V ++++++L Sbjct: 109 RNLVEFAKSLFKVSAIGFVIFLVLKSHMSEYAGLAALDLMAVLDYMRHQVIAMIMIVVLM 168 Query: 203 IATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260 + L D W Y +W ++KM+KQEIKDE KQ+ G+P+IK R +++ R R +MM Sbjct: 169 VFVLAAAD--WFYQRWAFNQQMKMTKQEIKDEHKQTEGDPMIKGRLRALRMQRARQRMMA 226 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 A +A++++TNPTHYA+AL+Y Q APVLVAKG +LIAK++R +A E+ +PI E P L Sbjct: 227 AVPKASVVVTNPTHYAVALQYDQDSMGAPVLVAKGVDLIAKRIRDLATENEVPIVENPPL 286 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L+ V ++ IPP YK VA++I Sbjct: 287 ARALYATVELDEEIPPEHYKTVAEII 312 >gi|163744325|ref|ZP_02151685.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45] gi|161381143|gb|EDQ05552.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45] Length = 372 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 109/350 (31%), Positives = 191/350 (54%), Gaps = 5/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D +KTE P+ KK+ DA +G+ P SRE + A L+ L+F + + Sbjct: 1 MSDEDK-SSKTEEPTEKKLRDARKKGDVPQSRETGTAMLVFALLMILVFVLPSSVGGIVE 59 Query: 61 DLHVLL----ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L L +A + +L L + ++P + + ++ + LIQ Sbjct: 60 ALQAPLLEAGVTAIGTGGTGLVEAGSVLKSLGFTLGLAMMPVVGIMVLAALFGVLIQGET 119 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V++ +KP +++ G KR++S V F K+ VK++++G I ++ + ++ Sbjct: 120 VVSAERIKPKISKLNPLSGFKRLFSAEAFVEFAKNTVKVLVIGFITVWAVRDIAQSLGQT 179 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + P ++L VR + ++ F+ + + DI W QW K MS +EI+DE K S Sbjct: 180 QAFVPETLLAATLQKVRWIFLVTATFLVPIAIADIIWKRAQWKKKQMMSLKEIRDEHKDS 239 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK R+ + R+R R ++ +A A++++TNPTHYA+AL+Y Q +D PV VAKG Sbjct: 240 EGDPQIKGRRAELRRARARQRIAQAIPGASVVLTNPTHYAVALKYEQGVDDVPVCVAKGA 299 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +++A+++R++A EH+IP+ E LAR+L V ++ IP ++AVA++I Sbjct: 300 DVMAQRIRELAKEHDIPMIENRPLARALHAAVEVDDRIPMEHWQAVAEII 349 >gi|323977935|gb|EGB73021.1| flagellar biosynthetic protein FlhB [Escherichia coli TW10509] Length = 382 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 108/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52 +D D+KTEAP+ ++E A EG P SRE + L + C+I+ L S Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61 Query: 53 PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 G++ ++ +D +++L E + ++ L++ + L A L+ P +L ++F S Sbjct: 62 AGLHFDHNIINDPNLILGQIILLIREAMLGLLPLISGVVLVA--LISPVMLGGLVFSGKS 119 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++P F +++ GIKR++S +K+ +K ILVG++ L + Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHH 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMNDVPKADVIVNNPTHYSVALQYDEHKMSAP 286 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ + Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346 Query: 350 YHKK 353 + K Sbjct: 347 WQLK 350 >gi|218548562|ref|YP_002382353.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ATCC 35469] gi|218356103|emb|CAQ88720.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469] gi|324113614|gb|EGC07589.1| flagellar biosynthetic protein FlhB [Escherichia fergusonii B253] gi|325496979|gb|EGC94838.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ECD227] Length = 382 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 192/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSMLILLVGVCVIWFGG-ESLARQLA 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ + S ++ + + Sbjct: 58 AMLSAGLHFDHHLINDPNLILGQIILLIKQAMMALLPLITGVVLVALISPVLLGGLIFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L + M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGCVAGFYLWHKWPEMMRLMAQS 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNALDLVGLCALLVVLGVIPMVGFDVFYQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP ++AKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMNDVPQADVIVNNPTHYSVALQYDENKMSAPKVIAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA EH+IP E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIAAEHHIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|308273532|emb|CBX30134.1| Flagellar biosynthetic protein flhB [uncultured Desulfobacterium sp.] Length = 356 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 118/357 (33%), Positives = 196/357 (54%), Gaps = 10/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIY 56 M+E +A KTE P+ KK ED +G S+E S LFS + A IY F S + Sbjct: 1 MAE-EASGEKTEKPTPKKREDIRKKGEVAKSKELSSVVVLFSGLFAMGIYGSFMLSK-VQ 58 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 +T L L++ T L I ++ HL +S ++ P L + S + Q Sbjct: 59 EITKSL---LSNPTITDL-TIHGVMEFSRHLIISFVVILAPLLAAVFAGAVLSNIAQVGF 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 +++ +KP F +++ +G+KR+ S+ +++ KS VK+I+VG +++T + Sbjct: 115 MVSGELIKPKFSKLNPFKGLKRLVSMQSVMELFKSMVKLIIVGATAYLTITHEMDNVSML 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 SI ++ F T + + + + L V+D + ++ ++KMSKQEIKDE K++ Sbjct: 175 GELELVSIFHYIFATFYNIFLKCSIAMLVLVVIDYAYQRWEFEKRIKMSKQEIKDEYKKT 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K+R ++I R +MM+ +A +IITNPTH+A+A++Y E +AP ++AKG Sbjct: 235 EGDPQVKSRIRAIQMEMARKRMMQDVPKADVIITNPTHFAVAIKYNGLEMNAPKVIAKGA 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA +++ +A +HNIP+ E LAR+L+K V I IP Y+AVA ++ IY K Sbjct: 295 GEIAARIKSLAADHNIPVVENKELARNLYKLVEIGREIPADLYQAVAGVLAYIYKLK 351 >gi|209964223|ref|YP_002297138.1| flagellar biosynthesis protein FlhB [Rhodospirillum centenum SW] gi|209957689|gb|ACI98325.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW] Length = 359 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 201/355 (56%), Gaps = 4/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 M+E+ D+KTE P+ KK+ DA +G S E +LF ILA + ++ P + Sbjct: 1 MAEDQDQDSKTEEPTDKKLSDAREKGQVAKSMEVGNLF--ILASGLVMVLLLLPWSGRIL 58 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 D + L + + +LT L+L + + P L+L ++ + + +IQ + + Sbjct: 59 WDAMMPFVERPHAILMAPAALGDVLTDLTLDIAFALAPTLVLLLLAALAAPIIQVGLMFS 118 Query: 120 LNHV-KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +V K +V+ G+K S+ NLV F+KS K++LVG ++++ L + ++ F++ Sbjct: 119 AENVFKFDLNKVNPLTGLKNKVSLKNLVEFLKSLGKLVLVGIVVSVLLLPLWTSIEHFLA 178 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S++ K++ +++ + + D + +Q+ +++M+KQE+KDE KQ+ G Sbjct: 179 LPLPSVIVETRHEAAKLIAAVVIVLGAIAGADYAFQRYQFMQQMRMTKQEVKDEYKQTEG 238 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK++ + + R R++MM A A +++TNPTH+A+AL+Y + AP +VAKG +L Sbjct: 239 DPLIKSKIRQLRMQRSRNRMMAAVPSADVVVTNPTHFAVALKYDASAMSAPRVVAKGADL 298 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IAK++R++A E +P+ P LAR+LF I+ IP YKAVAQ+I ++ K Sbjct: 299 IAKRIRELAEEAGVPVISNPPLARALFATAEIDEEIPAEHYKAVAQVISYVFKLK 353 >gi|224373568|ref|YP_002607940.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH] gi|223588472|gb|ACM92208.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH] Length = 351 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 197/353 (55%), Gaps = 18/353 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA EGN P S E S F + +I ++F+ Y + ++ S Sbjct: 6 EKTEDPTPKKLQDARKEGNVPKSMETSGFVVLFVAIIVIIFYLKYITYYL-EKFYMYYTS 64 Query: 69 ATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +E +IVF ++ +L+ L+ P L ++ GI ++Q + + + P F Sbjct: 65 FIG--VEITKNIVFEIVLKSALNFFILLAPLLGAVVLAGILGNVMQFGFLFTVKPIIPKF 122 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++++ +GIKR++S+ LV +K +K+ +++ + + F+ P L Sbjct: 123 EKINPIKGIKRLFSLKTLVEGIKMTLKV-------SVAFGVGAWLFMKFLEEIPKLELMS 175 Query: 188 AFFTVR----KVLIMILLFIATLTV---LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F ++ K LI+I +A V +D + + + L+MSKQEIKDE KQ+ GNP Sbjct: 176 FFEQLKWFEEKALIIISAMLAVFLVFAAIDFIYQRYSYKKSLRMSKQEIKDEYKQTEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R + +MM +A ++ITNPTHYA+A+RY +T+++AP ++AKG + +A Sbjct: 236 EIKAKIRQLQREMAKKRMMSEVPKADVVITNPTHYAVAIRYDKTKDEAPRVIAKGVDNLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA EH+I I E P LAR L+K V I+ IP YKAVA+++ +Y K Sbjct: 296 LKIKEIAREHDIMIVENPPLARELYKLVDIDELIPQKLYKAVAEVLAFVYKAK 348 >gi|229544411|ref|ZP_04433469.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1] gi|229324896|gb|EEN90573.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1] Length = 360 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/351 (31%), Positives = 196/351 (55%), Gaps = 14/351 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK DA +G S++ + ++++ ++L +F G S+ S + L Sbjct: 14 EKTEKATPKKRRDARKKGQTAKSQD--IVTAVMLLAVFLFLYF--GASSIGSPMMALFRQ 69 Query: 69 A-TQRKLEDISH--IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 A ++ L+D++ + L+T + + +++P + + ++ G+ + Q + +KP Sbjct: 70 AFSKYMLQDVTEQSVGKLMTGVMKQLASMLLPVMAVALLAGVVGNVAQTGLLFTGEGLKP 129 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANPHS 183 + +++ G+KRI+SI LV +KS +K+ +VG + + N + L F SA Sbjct: 130 NINKINPVAGLKRIFSIRALVELLKSVLKMAVVGVVAFYVIWANIQDISGLPFKSAGDTL 189 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + + LF+ L VLD + + ++MSKQEIK+E K G+P+IK Sbjct: 190 AAVGHLAAITGISASVALFV--LAVLDYLYQRFDFEKNIRMSKQEIKEEFKNMEGDPLIK 247 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ + R +MM+ A ++ITNPTH+A+ LRY +T++DAP++VAKG + +A+K+ Sbjct: 248 SKIRQKQREMAMRRMMQEVPNADVVITNPTHFAVCLRYDETKSDAPIVVAKGADFLAQKI 307 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYH 351 + IA EH+I + E LAR+L++QV + IP F+KAVA++ +YKI H Sbjct: 308 KSIAKEHDIVMLENRPLARALYEQVEVGGRIPEQFFKAVAEILAYVYKIKH 358 >gi|254420201|ref|ZP_05033925.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3] gi|196186378|gb|EDX81354.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3] Length = 358 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 102/355 (28%), Positives = 190/355 (53%), Gaps = 2/355 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ P++KTE + +K+EDA +G+ S++ S+ +L S+ Sbjct: 1 MADDTDPESKTEDATPRKLEDARKKGDVAKSQDVGQVLSLAGAAAVILGAGGWFAGSMAQ 60 Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L +A+ Q + D +L + + + +L ++ G G +L Q + Sbjct: 61 QLLPFIAAPHQMLGMLDSGAGAQILAQALWAMTPFLGAVMLATIIGGAGGHLAQSGLIFT 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP + V+ G KRI+ + L+ F+K+F+K+I V + + L + + ++ Sbjct: 121 AEKLKPKWSSVNPMSGFKRIFGPDGLMQFVKTFLKLIAVCVVCWMVLKPHVREFENMVTL 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P ++L A + + ++ + D W ++ +++M+K+E+K++ KQS G+ Sbjct: 181 SPAALLPLARDMALALFVAAIILLGATAGADFIWQKMRFAKRMRMTKEELKEDYKQSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNL 298 P IK + K I R R +MM +AT+I+TNPTHY++ALRY +E D APV VAKG + Sbjct: 241 PHIKAKLKQIRMQRSRQRMMANVPKATVIVTNPTHYSVALRYEPSEGDGAPVCVAKGVDA 300 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R++A EH +PI E LAR+L+ V I++ IP ++A A++I ++ + Sbjct: 301 LAMRIREVAKEHGVPIVENVPLARALYASVEIDAVIPKEHFEAAAKIIGFVFQSR 355 >gi|33601532|ref|NP_889092.1| flagellar biosynthesis protein FlhB [Bordetella bronchiseptica RB50] gi|33575968|emb|CAE33047.1| flagellar biosynthetic protein FlhB [Bordetella bronchiseptica RB50] Length = 384 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 178/350 (50%), Gaps = 15/350 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+EA S +++E A EG SRE F + A + G++ S L+ L Sbjct: 8 EKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVA--------GVWLSGSMLYQGLTG 59 Query: 69 ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 +R L +D +V H + A V+P + + + S ++ V + Sbjct: 60 VLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTK 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P+F ++SL GIKR++S +V +K+ K LVG + + + ML + P Sbjct: 120 PLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAP 179 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + L A V +I+ + + +LD+ W KL+M+K++++ E K+S G+P Sbjct: 180 SAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDPH 239 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K R + R+ R +MM A +++TNPTHYA+AL+Y E AP +VAKG LIA Sbjct: 240 VKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGEAGAPRVVAKGTGLIAA 299 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ Sbjct: 300 RIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQ 349 >gi|163856421|ref|YP_001630719.1| flagellar biosynthesis protein FlhB [Bordetella petrii DSM 12804] gi|163260149|emb|CAP42450.1| flagellar biosynthesis protein FlhB [Bordetella petrii] Length = 379 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 4/344 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLA 67 KTEA S +++E A EG SRE F +LA + L+ +Y +T L L Sbjct: 8 EKTEAASPRRLEKAREEGQIARSRELGTFL-LLAAGVGGLWLSGSMLYRGLTGVLRNGLG 66 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 R D +V + A LV+P + M + + ++ V + ++P F Sbjct: 67 F-DARIGRDPGIMVAQAVDGAGQALLLVLPIFGVLMAVAVLASVVLGGFVFSAKPLQPDF 125 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++SL G+KR+ S +V +K+ K +LVG + + + ML + A P L Sbjct: 126 AKLSLFSGLKRMVSAQTVVELLKAVAKALLVGGVAVAVIGGHRDEMLALMHAAPTEALVK 185 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A V +I+ + + +LD+ W KL+MSK++++ E K+S G+P IK R + Sbjct: 186 ALTLVALCAALIVASLGIIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDPHIKARIR 245 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 RS R +MM RA +++TNPTHYA+ALRY + + AP +VAKG L+A ++R++A Sbjct: 246 QQQRSMARRRMMSEVPRADVVVTNPTHYAVALRYAEGQA-APRVVAKGTGLVAARIRELA 304 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 H +P+ + P LAR+L++ V + IP Y AVA+++ ++ Sbjct: 305 AGHRVPLLQAPPLARALYQHVELGQEIPAALYTAVAEVLAWVFQ 348 >gi|284925607|gb|ADC27959.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni IA3902] Length = 362 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + LF S Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMLSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A ++ I ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY + R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|317048539|ref|YP_004116187.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b] gi|316950156|gb|ADU69631.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b] Length = 384 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/354 (29%), Positives = 193/354 (54%), Gaps = 7/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + ++KTE+P++ ++E A +G P SRE +S+L L ++ + G S+ Sbjct: 1 MADESSDEDKTESPTAHRLEKARQDGQIPRSRE---LTSLLMMLSGIMILWLGGT-SIAR 56 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L ++A+ + D IV ++ L A V+P + ++ I + ++ V Sbjct: 57 RLASMVATGFRFDHGMVTDDKVIVAHISSLIGQAVLAVLPLMAGLVLVAIAAPMLLGGIV 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ + P F +++ G+KR+ S +K+ +K +LVG + + ++ ML I Sbjct: 117 ISGKSLSPDFTKLNPLSGLKRMVSGQTWAELLKAILKAVLVGLVAGWYIWSHWPEMLRLI 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S +P + L H + ++++L + + D+ W + ++ KL+MS+Q+I+DE KQ Sbjct: 177 SESPMNALEHGMDMIAICCVLVMLGLIPMVGFDVFWQLYSYFKKLRMSRQDIRDEFKQQE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + R+ R +MM +A +I+TNPTHY++AL+Y + AP ++AKG Sbjct: 237 GDPHVKGRIRQAMRAAARRRMMADVPKADVIVTNPTHYSVALQYNDKKMSAPKVIAKGAG 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A K+R++ EH +PI E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 297 EVALKIRELGKEHRVPILEAPPLARALYRHTEIGQFIPGALYAAVAEVLAWVWQ 350 >gi|56413166|ref|YP_150241.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362092|ref|YP_002141729.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127423|gb|AAV76929.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093569|emb|CAR59032.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 383 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ I+ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 351 >gi|161502970|ref|YP_001570082.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864317|gb|ABX20940.1| hypothetical protein SARI_01032 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 383 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTE P+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEDPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L N+ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGSYLWHNWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PITAMGNALNLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYEENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|148926430|ref|ZP_01810113.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844593|gb|EDK21699.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 362 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + LF S Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A ++ I ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPII------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY + R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVTQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|86153620|ref|ZP_01071823.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni HB93-13] gi|157414632|ref|YP_001481888.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni 81116] gi|4105266|gb|AAD02331.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni] gi|85842581|gb|EAQ59793.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni HB93-13] gi|157385596|gb|ABV51911.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747272|gb|ADN90542.1| Flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni M1] gi|315931587|gb|EFV10553.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 327] Length = 362 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + LF S Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A ++ I ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY + R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|157145338|ref|YP_001452657.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC BAA-895] gi|157082543|gb|ABV12221.1| hypothetical protein CKO_01078 [Citrobacter koseri ATCC BAA-895] Length = 383 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52 ++ D+KTEAP+ ++E A EG P S+E + L + C+I+ L S Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQVPRSKELTSLLILLVGVCIIWIGGESLARRLAGMLS 62 Query: 53 PGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 G+ +S+ +D +++L E + ++ L+T + L A L+ P +L ++F S Sbjct: 63 AGLRFDHSMVNDPNLILGQIILLIKEAMIALLPLITGVVLVA--LISPVMLGGLIFSGKS 120 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++P F +++ GIKR++S +K+ +K LVG++ L + Sbjct: 121 -------------LQPKFSKLNPLSGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHH 167 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + M+ ++ +P + + +A V ++++L + + D+ + KL+MS+++I Sbjct: 168 WPEMMRLMAESPVTAMGNALDLVGLCALLVVLGVIPMVAFDVVFQIFSHLKKLRMSRKDI 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE K+S G+P IK + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP Sbjct: 228 RDEFKESEGDPHIKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG L+A ++R+I EH +P E P LAR+L++ I IP Y AVA+++ + Sbjct: 288 KVVAKGAGLVALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 347 Query: 350 YHKK 353 + K Sbjct: 348 WQLK 351 >gi|315498431|ref|YP_004087235.1| flagellar biosynthetic protein flhb [Asticcacaulis excentricus CB 48] gi|315416443|gb|ADU13084.1| flagellar biosynthetic protein FlhB [Asticcacaulis excentricus CB 48] Length = 355 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/348 (30%), Positives = 189/348 (54%), Gaps = 12/348 (3%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D ++KTE S++K+E+A +G+ S + S++A ++ + S+T L V Sbjct: 3 DEGEDKTEEASARKLEEARKKGDVAKSADVPQALSLIAACALVMLYGDKIALSLTETLRV 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY--LIQRIPVLNLNH 122 +A+ + + + H L L I L+L + G+ L Q + + Sbjct: 63 FVAAPHLLRDSLMGDGGLTIAH-HLMGQVLPIIALILLVAGAAGAIGSLAQTGLMFSTEK 121 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP F +++ G KR++ ++ L+ F K+ +K+I VG I + L + A+P Sbjct: 122 LKPDFSKLNPMAGFKRLFGVDALIQFAKTVIKLIAVGVITWMILKGRAGDVAGLAGASPL 181 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH----QWYSKLKMSKQEIKDEIKQSYG 238 +L +A ++V + + + +L+ G Y ++ ++KM+K E+KDE KQ+ G Sbjct: 182 MVLPYA----KEVFFSLAVAVCLFMLLEGGADYFIQKLRFSQRMKMTKTEVKDEYKQTEG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R K I + R +MM +AT++ITNPTHYA+ALRY E AP+ VAKG + Sbjct: 238 DPHVKGRLKQIRMEKSRQRMMANVPKATVVITNPTHYAVALRY-DEETPAPLCVAKGVDT 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A K+R++A +H+I I E+P LAR+L+ + ++ IP ++AVA++I Sbjct: 297 LALKIREVAGDHDIAIVEDPPLARALYAAIDVDEIIPETHFQAVAKII 344 >gi|302878260|ref|YP_003846824.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans ES-2] gi|302581049|gb|ADL55060.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans ES-2] Length = 379 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/359 (32%), Positives = 193/359 (53%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE PS ++++ A +G S E S FS +LA L F + S+ + Sbjct: 1 MAE-DSDLEKTEQPSQRRLDQAKEKGQVARSTELSTFSILLAGGATLWFMGA----SLNA 55 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + LL A Q + ++ L LS+ P LL+ ++ +G+ LI + Sbjct: 56 HMVRLLHDALIFNQDVVFKPELMIPRLYDLSMDMLITFAPVLLMMLITALGAPLILNGWL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P F R++ GI RI S N+LV +K+ K +VG + T + + ++ Sbjct: 116 FSTEALVPQFSRMNPITGIGRIISTNSLVELVKALGKATIVGGVATWVIWHHRDDVIQLA 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSKQEIKDEIK 234 S + + + + V + I+ + + +D+ WS+++ KL M+K+EI+ E K Sbjct: 176 SLSVTTAISQTGYLVCGSFLAIVSGMLLIVAIDVPFQLWSHNK---KLMMTKEEIRQESK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ GNP +K R +S+ R R +MM A A +++TNPTHY++AL+Y APV+VAK Sbjct: 233 ETDGNPEVKGRIRSMQREAARRRMMSAIPTADVVVTNPTHYSVALKYSDKGMSAPVVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G +LIA ++R+IA E+N+PI E P LAR+L K I AIP Y AVA+++ +Y K Sbjct: 293 GSHLIAHRIREIAQENNVPILEAPPLARALHKHTEIGDAIPEALYTAVAEVLAYVYQLK 351 >gi|197265115|ref|ZP_03165189.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243370|gb|EDY25990.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 383 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESEDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|16760863|ref|NP_456480.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141445|ref|NP_804787.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163285|ref|ZP_03348995.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426385|ref|ZP_03359135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583527|ref|ZP_03365353.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289824043|ref|ZP_06543641.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25322221|pir||AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503160|emb|CAD05665.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhi] gi|29137072|gb|AAO68636.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 383 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|33596133|ref|NP_883776.1| flagellar biosynthesis protein FlhB [Bordetella parapertussis 12822] gi|33573136|emb|CAE36781.1| flagellar biosynthetic protein FlhB [Bordetella parapertussis] Length = 384 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 178/350 (50%), Gaps = 15/350 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+EA S +++E A EG SRE F + A ++ G++ S L+ L Sbjct: 8 EKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVV--------GVWLSGSMLYQGLTG 59 Query: 69 ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 +R L +D +V H + A V+P + + + S ++ V + Sbjct: 60 VLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTK 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P+F ++SL GIKR++S +V +K+ K LVG + + + ML + P Sbjct: 120 PLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAP 179 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + L A V +I+ + + +LD+ W KL+M+K++++ E K+S G+P Sbjct: 180 SAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDPH 239 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K R + R+ R +MM A +++TNPTHYA+AL+Y AP +VAKG LIA Sbjct: 240 VKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAA 299 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ Sbjct: 300 RIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQ 349 >gi|255021385|ref|ZP_05293433.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] gi|254969248|gb|EET26762.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] Length = 375 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/358 (31%), Positives = 198/358 (55%), Gaps = 10/358 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + +TEA + KK EDA +G P SRE S + +L L + I ++ + Sbjct: 1 MAEEQS-QERTEAATPKKREDARKKGQVPRSRELSTSALLLLSASLL-YGLGSEIQTMAT 58 Query: 61 DL---HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 D + L A +D+ + + L+LS V+P L M+ + + + Sbjct: 59 DFLRAGLRLTPAVMSNHQDLLRHLVQMAGLALSD---VLPLWLALMLVVVLASIALGGWN 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P+F + EGI+R++S + +K+ +K ++VG I + +L I Sbjct: 116 FSTKTLIPNFSHLDPIEGIQRLFSRRGFLELVKAALKTLVVGGIGVTVIWAQRGELLGLI 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQS 236 +P S + + ++ ++ +I+ L VL D+ + + KLKMS+Q+IKDE+K+ Sbjct: 176 QISPKSAMV-SLLSMSGLVFLIMAVGTLLIVLFDVPFQLWSFNEKLKMSRQDIKDEMKEM 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP IK + +S+ R R +MM A A++++TNPTHYA+ALRY+++EN APV++AKG Sbjct: 235 DGNPQIKTKVRSMQREMARRRMMAAIPSASVVVTNPTHYAVALRYVESENRAPVVLAKGA 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +A ++R++A EH +P+ E P LAR+L+ V + IP + Y+AVA+++ ++ ++ Sbjct: 295 GNVALRIRELAQEHGVPLVEAPPLARALYHHVELEQEIPALLYRAVAEVLAYLHQLRL 352 >gi|16765256|ref|NP_460871.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161613526|ref|YP_001587491.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994220|ref|ZP_02575312.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234020|ref|ZP_02659078.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168462551|ref|ZP_02696482.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820742|ref|ZP_02832742.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445536|ref|YP_002041180.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472731|ref|ZP_03078715.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251527|ref|YP_002146107.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238912509|ref|ZP_04656346.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|729522|sp|P40727|FLHB_SALTY RecName: Full=Flagellar biosynthetic protein flhB gi|633115|dbj|BAA06902.1| flagellar protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420451|gb|AAL20830.1| putative part of export apparatus for flagellar proteins [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161362890|gb|ABX66658.1| hypothetical protein SPAB_01246 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404199|gb|ACF64421.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459095|gb|EDX47934.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634185|gb|EDX52537.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215230|gb|ACH52627.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205327877|gb|EDZ14641.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331965|gb|EDZ18729.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342676|gb|EDZ29440.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247084|emb|CBG24905.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993900|gb|ACY88785.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912908|dbj|BAJ36882.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085466|emb|CBY95247.1| Flagellar biosynthetic protein flhB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224557|gb|EFX49620.1| Flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332988807|gb|AEF07790.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 383 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|307131618|ref|YP_003883634.1| flagellar biosynthesis protein flhB [Dickeya dadantii 3937] gi|306529147|gb|ADM99077.1| Flagellar biosynthesis protein flhB [Dickeya dadantii 3937] Length = 383 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 184/353 (52%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ KTEAP+ ++ E A EG P SRE +S+L + L + G + + L Sbjct: 3 DDSDLEKTEAPTPQRTEKAREEGQIPRSRE---LTSVLMLIAGLAILWGSG-SGMAARLT 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++A IS +++H+ A ++P L ++ + + ++ + + Sbjct: 59 DMMAKGLIFDHNFISDERLIISHVGSLIEQAVMALVPILFGLVLVALAAPVLLGGLIFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F +++ G+KR++S + L K+ +K ++VG I L N+ +ML +S Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTHVLAELFKAILKAVIVGCITFWFLKHNWNSMLHLVSEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + A ++L + + D+GW +L+MSKQEI+DE K+ G+P Sbjct: 179 LGSAIKDALNIAFLCCFWVILGLFPMVAFDVGWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG + IA Sbjct: 239 HVKGRVRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMHAPKVLAKGADQIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IPI E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIRELGSEHRIPILEAPPLARALYRHTEIGHHIPTGLYAAVAEVLSWVYQLK 351 >gi|283955760|ref|ZP_06373251.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792715|gb|EFC31493.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 1336] Length = 362 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS-------------LFSSILACLIYLLFFFSPGI 55 KTE P+SKKIEDA EGN P S++A+ L S + I L+ + Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLLMMSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A ++ I ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY + R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|198245714|ref|YP_002215169.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940230|gb|ACH77563.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 383 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y +++ AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|326622917|gb|EGE29262.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 383 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y +++ AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLSWVWQLK 351 >gi|57237386|ref|YP_178399.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni RM1221] gi|86149065|ref|ZP_01067297.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597389|ref|ZP_01100624.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 84-25] gi|205356015|ref|ZP_03222783.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561994|ref|YP_002343773.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57166190|gb|AAW34969.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni RM1221] gi|85840423|gb|EAQ57680.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190450|gb|EAQ94424.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 84-25] gi|112359700|emb|CAL34486.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205346139|gb|EDZ32774.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315928679|gb|EFV07962.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 305] Length = 362 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 198/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + LF S Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A ++ I ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY + R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY + Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTGKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|329888173|ref|ZP_08266771.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC 11568] gi|328846729|gb|EGF96291.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC 11568] Length = 358 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 196/358 (54%), Gaps = 8/358 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--V 58 M++ P++KTE + +K+E+A +G+ +++ + +++ + G +S + Sbjct: 1 MADGPDPESKTEDATPRKLEEARKKGD--VAKSPDVAAALSLAGAAGVLLAGGGWFSTRI 58 Query: 59 TSDLHVLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L LA A LE V + H +A+ + + ++ G+G L Q Sbjct: 59 AEALTPFLAQPHAMIGGLE-AGGGVEIGMHAVWAAAPFLAALMFAVILGGVGGNLAQSGL 117 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + VKP + +V+ EG KRI+ + LV F+K+F+K++ +G + L + + + Sbjct: 118 IFTADKVKPKWSKVNPLEGFKRIFGPDGLVQFLKTFIKLVAIGAVCWWVLKPHARELENL 177 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + +P IL A +++ L+F++ D W ++ +++M+K+E+K++ KQS Sbjct: 178 AAMSPAMILPFARDLALALMLSALVFLSLTAGADYLWQRMRFAKRMRMTKEELKEDFKQS 237 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKG 295 G+P +K + + I R R +MM+A AT+IITNPTHY++ALRY + D APV VAKG Sbjct: 238 DGDPHVKAKLRQIRMQRGRQRMMQAVPDATVIITNPTHYSVALRYEPDKGDGAPVCVAKG 297 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A ++R++A EH +PI E LAR+L+ V ++ IP ++A A++I + ++ Sbjct: 298 VDALALRIREVAREHKVPIVENVPLARALYAAVEVDGVIPREHFEAAAKVIGFVMQQR 355 >gi|283955188|ref|ZP_06372690.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 414] gi|283793401|gb|EFC32168.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 414] Length = 362 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 119/373 (31%), Positives = 202/373 (54%), Gaps = 48/373 (12%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS-------------LFSSILACLIYL 47 M+ D KTE P+SKKIEDA EGN P S++A+ L + I Sbjct: 1 MASED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTVTLLMMGFMGERIVN 58 Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFG 106 L+ + V DL ++ A ++ I ++ +L + LS +++ G+L M FG Sbjct: 59 LYRYYQSFIGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMVAGVLGNIMQFG 111 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITIS 165 ++ P++ P+ +++ +G+K ++S+ LV VKIIL VG + TI+ Sbjct: 112 ---FIFTTKPIM------PNLGKINPLKGLKNLFSLKKLV----ESVKIILKVGIVFTIA 158 Query: 166 LTENYFTMLDFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQW 218 + +L F+ P LY + R +++ ++ +A L VLD+ Q+ Sbjct: 159 ----FIVLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVMVAFLIIAVLDVFLVRFQY 214 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 + L+MSKQEIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A Sbjct: 215 FKGLRMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVA 274 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 +RY ++ AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP Sbjct: 275 IRYDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM 334 Query: 339 YKAVAQLIYKIYH 351 +KAVA+++ +Y+ Sbjct: 335 FKAVAEVLGFVYN 347 >gi|91976176|ref|YP_568835.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB5] gi|91682632|gb|ABE38934.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisB5] Length = 357 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 113/344 (32%), Positives = 187/344 (54%), Gaps = 4/344 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VTSDL 62 +D + K + P+ K+++DAL G+ S+E + + ++A LL FS I + VT + Sbjct: 3 DDNDEEKQQEPTQKRLDDALKRGDVAKSQEVNTWF-VIAGATLLLSSFSGSIGTGVTGPM 61 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 L+ + K++ + + L + S L +P L L M+ IGS LIQ V + Sbjct: 62 RALIEKSWMLKVDGAGLLALTKSLLLMLVSVLGVP-LFLLMLVAIGSNLIQHRLVFSTEG 120 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P ++S EG KR++ L NF+K K+I +G ++ L + + + Sbjct: 121 LTPKLSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMDVV 180 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S+L K++ + +A + D + Y W+ + KMS QE+KDE KQS G+P I Sbjct: 181 SLLGVTVGLTLKLMGSVAAVLAFVAAGDYFFQYRTWHERQKMSLQEVKDEYKQSEGDPHI 240 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R + I R++ +MM A A+++ITNPTH+++AL+Y + AP+ VAKG + IA K Sbjct: 241 KGRIRQIRYQRMKKRMMAAVPSASVVITNPTHFSVALKY-ERGMQAPICVAKGADAIAFK 299 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R++A +N+PI E LAR+L+ V ++ IP Y AVA++I Sbjct: 300 IREVAKANNVPIVENVPLARALYATVEVDGEIPIEHYHAVAEVI 343 >gi|90423033|ref|YP_531403.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB18] gi|90105047|gb|ABD87084.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisB18] Length = 358 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/346 (31%), Positives = 189/346 (54%), Gaps = 3/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ + KT+ P+ K+++DAL G+ S+E + + I + L F + + Sbjct: 1 MSDDDSSE-KTQDPTQKRLDDALERGDVAKSQEVNTWFMIAGATLVLSSFSGSVGSGLQN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ ++ + + + + L + + + +P L+L + G+ L R+ V + Sbjct: 60 PLRNLIENSWMIRTDGAGLMALTQSLLYAAIAAMGVPFLMLIIAALAGNMLQHRL-VFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F ++S G KR++ NF+K K+I +G ++ L + + I + Sbjct: 119 EGLKPKFSKISPLAGAKRLFGKQAAANFLKGLFKVIALGAVMVAILWPERYRLDAMIRLD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +I+ K++ ++ +A + + D + Y WY K KMS QE+K+E KQS G+P Sbjct: 179 IGAIMGLTIALTLKLMAAVVAMLAAVAIADFFFQYRTWYEKQKMSLQEVKEEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I R+R +MM A +A+++ITNPTHY++AL Y + AP+ VAKG + IA Sbjct: 239 HIKGRIRQIRHQRMRKRMMAAVPQASVVITNPTHYSVALSY-ENGMSAPICVAKGVDSIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R++A H++PI E LAR+L+ V I+ IP Y AVA++I Sbjct: 298 FKIREVAKAHDVPIIENVPLARALYATVKIDEEIPVEHYHAVAEII 343 >gi|283785619|ref|YP_003365484.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168] gi|282949073|emb|CBG88678.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168] Length = 382 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 113/367 (30%), Positives = 194/367 (52%), Gaps = 31/367 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLF 49 MSE + D+KTEAP+ ++E A EG P SRE + L + C+I+ L Sbjct: 1 MSEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWIGGESLARRLSA 58 Query: 50 FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 S G+ +S+ +D ++L E + ++ L+T + L A L+ P LL ++F Sbjct: 59 MLSAGLRFDHSMVNDPSLILGQIILLIKEAMIALLPLITGVVLVA--LISPVLLGGLIFS 116 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 S ++P F +++ GIKR++S + +K+ +K LVG + + L Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRMFSAQSGAELLKAVLKSTLVGGVTALYL 163 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 + M+ ++ +P + + A V ++++L + + D+ + KL+MS+ Sbjct: 164 WHKWPQMMRLMAESPITAMGDALDLVGLCALLVVLGVIPMVGFDVIFQIFSHLKKLRMSR 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQS G+P +K R + + R+ R +MM A +I+TNPTHY++AL+Y + + Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMQRAAARQRMMSDVPNADVIVTNPTHYSVALQYDENKM 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG L+A ++R+I E+ IP E P LAR+L++ I IP Y AVA+++ Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENKIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343 Query: 347 YKIYHKK 353 + K Sbjct: 344 AWVLQLK 350 >gi|153952141|ref|YP_001398614.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. doylei 269.97] gi|152939587|gb|ABS44328.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. doylei 269.97] Length = 362 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 115/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + LF S Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A + E ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIIIKSIFE----VLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY A+ R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVAQLAWLRDRSIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVADADVVITNPTHYAVAIRYDTSKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|62180491|ref|YP_216908.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583582|ref|YP_002637380.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128124|gb|AAX65827.1| putative part of export apparatus for flagellar proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468109|gb|ACN45939.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714967|gb|EFZ06538.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 383 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIRELGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|296135634|ref|YP_003642876.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12] gi|295795756|gb|ADG30546.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12] Length = 373 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 114/369 (30%), Positives = 194/369 (52%), Gaps = 38/369 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL----ACLIYLL--FFFSPG 54 M+E+ A + + A S K+ + A +G ++R L SS+L A ++Y +F+ G Sbjct: 1 MAEDSAQEKELPA-SQKRKQQAREKGQ--VARSRDLTSSLLLLGMAAVVYTAGGWFYDMG 57 Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--------LLFMMFG 106 + + L V ASA+Q D + ++ +A R+++ GL L F+ Sbjct: 58 RELLQTGLTVS-ASASQ----DPAAML-------QAAGRVLVLGLIVLAPVLALTFLASA 105 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 G + V + + P F R+ +GI R++SI L K+ +K I++ I I + Sbjct: 106 AGGVAMGGW-VFSTEALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVI 164 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKL 222 +L + P A + ++ L++A+ T+L D+ W Q KL Sbjct: 165 WNERGALLGLLQVEPQ----LAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKL 220 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 KMS+Q+++DE+++S GNP IK + + + R R R +MM A +A +++TNPTHYA+AL Y Sbjct: 221 KMSRQDLQDEMRESEGNPQIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYK 280 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + +N APV++A G + +A ++R++A EHN+P+ E P LAR+LF + IP Y AV Sbjct: 281 EGKNRAPVVLALGADRVAARIREVAAEHNVPVIEAPPLARALFHHAELEQEIPVALYNAV 340 Query: 343 AQLIYKIYH 351 A L+ ++ Sbjct: 341 ALLLAYVFQ 349 >gi|283832722|ref|ZP_06352463.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] gi|291072402|gb|EFE10511.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] Length = 383 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/366 (29%), Positives = 198/366 (54%), Gaps = 31/366 (8%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFF 50 E+D D+KTEAP+ ++E A EG P S+E + L + C+I+ L Sbjct: 3 EESD--DDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAGM 60 Query: 51 FSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107 S G+ +S+ +D +++L+ + + ++ L+T + L A L+ P +L ++F Sbjct: 61 LSAGLRFDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVA--LISPVMLGGLIFSG 118 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 S ++P F +++ GIKR++S +K+ +K LVG++ L Sbjct: 119 KS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLW 165 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 N+ M+ ++ +P + + +A V ++++L + + D+ + + KL+MS+Q Sbjct: 166 HNWPEMMRLVAESPITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHLKKLRMSRQ 225 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 +I+DE KQS G+P +K + + + R+ + +MM +A +I+TNPTHY++AL+Y + + Sbjct: 226 DIRDEFKQSEGDPHVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALQYDENKMS 285 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG +A ++R+I EH +P E P LAR+L++ I IP Y AVA+++ Sbjct: 286 APKVVAKGAGPVALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLA 345 Query: 348 KIYHKK 353 ++ K Sbjct: 346 WVWQLK 351 >gi|167552446|ref|ZP_02346199.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168241547|ref|ZP_02666479.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259807|ref|ZP_02681780.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451224|ref|YP_002045968.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200389783|ref|ZP_03216394.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207856565|ref|YP_002243216.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194409528|gb|ACF69747.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199602228|gb|EDZ00774.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322918|gb|EDZ10757.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339229|gb|EDZ25993.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350661|gb|EDZ37292.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708368|emb|CAR32672.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 383 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|317133470|ref|YP_004092784.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense YUAN-3] gi|315471449|gb|ADU28053.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense YUAN-3] Length = 356 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 111/357 (31%), Positives = 197/357 (55%), Gaps = 16/357 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M E A D KTE + K+ ED +G+ S + + ++L L I S++ Sbjct: 1 MPEASAGD-KTEKATPKRREDERKKGHVVQSPDVTSAVAMLGTFAVLRVMGPSMIKSLSD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPV 117 + +LA+ T +S + ++ + S L+ +P +L+ + + L Q + Sbjct: 60 GMRGMLANLTS----AVSGYEDMRARMTAALSVLIGVAVPVMLVAFAATVATTLAQTRLL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++L+ +KP R++ EGIKR++S+ +LV KS +K++LVG ++ + T+L Sbjct: 116 VSLDQLKPDLSRLNPLEGIKRLFSVRSLVELGKSILKVVLVGAVVYFEIQPQMHTILLLY 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 + + L +F V +L I + +A L +D + + Q+ ++M+K+EIK+E Sbjct: 176 NMS----LAQSFSWVAGILADIGIKVAGVMLLLGAIDYFYQWFQYEKDIRMTKEEIKEEY 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ GNP IK + K++ R R +MM+ +A +++ NPTH+A+AL+Y + APV VA Sbjct: 232 KQMEGNPEIKGKIKNLQRQMARRRMMQDVPKADVVLRNPTHFAVALKYEHGKQRAPVCVA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 KG+N +A ++ +IA E+++ I E+P L R+L++ V + IP FYKAVA+++ IY Sbjct: 292 KGRNAVALRIVEIAEENHVYIREDPPLTRALYQAVEVGGQIPAEFYKAVAEVLAYIY 348 >gi|86151337|ref|ZP_01069552.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 260.94] gi|315123900|ref|YP_004065904.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841684|gb|EAQ58931.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 260.94] gi|315017622|gb|ADT65715.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 362 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 198/364 (54%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55 KTE P+SKKIEDA EGN P S++A+ ++ + LF S Sbjct: 7 EKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTITLFMMSFMGERIVNLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114 V DL ++ A ++ I ++ +L + LS ++I G+L M FG ++ Sbjct: 67 IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P+ +++ +G+K ++S+ +V +K +K VG + TI+ + +L Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163 Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227 F+ P LY + R +++ ++ +A L VLD+ Q++ L+MSKQ Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343 Query: 348 KIYH 351 +Y+ Sbjct: 344 FVYN 347 >gi|302343745|ref|YP_003808274.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM 2075] gi|301640358|gb|ADK85680.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM 2075] Length = 364 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 115/359 (32%), Positives = 199/359 (55%), Gaps = 13/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SV 58 M++N A + KTE P+ ++ A +G S+E + A L+ L+ F +Y S Sbjct: 1 MADNTAQE-KTEKPTPRRRSKAREKGQVAKSQELGSIGVLFAGLM-CLYAFGGFVYDQSA 58 Query: 59 TSDLHVL-LASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 T H+L A+ T L + ++ + L+ H R + P +L ++ G+ + Q Sbjct: 59 TMMTHILSRAAETPVSLAQVHNLSIDLMGHFL----RTLAPFMLAVVLAGVAVNVAQTGF 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTML 174 +L + ++P K+++ EG+K+ S+ LV +K+ KI +VG + + L + F + Sbjct: 115 MLATSRLRPDLKKINPLEGLKKFVSMRMLVEAIKNTGKICVVGLVAYLVLADELPNFPNI 174 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + ++Y A +R + + L + L +LD + +Q+ LKMSKQEIKDE K Sbjct: 175 GKLGGLTAMLIYIADVCLR-IFLWSLAAMFILAILDYAYQKYQFEKGLKMSKQEIKDEFK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 Q+ G+P +K+R + + R R +MM A +A ++ITNPTH A+A+ Y + DAP +VAK Sbjct: 234 QTEGDPHVKSRIRQLQRERAMKRMMAAVPQADVVITNPTHLAVAIFYQAGQMDAPEVVAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 GQN IA++++ +A E+N+PI E+ LA++L+K V + IP + AVA ++ +Y +K Sbjct: 294 GQNKIAERIKALAQENNVPIIEDKPLAQALYKSVEVGQRIPFELFGAVAAILAHVYREK 352 >gi|301158434|emb|CBW17943.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323130198|gb|ADX17628.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 383 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVIDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|90415339|ref|ZP_01223273.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2207] gi|90332662|gb|EAS47832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2207] Length = 382 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 192/356 (53%), Gaps = 11/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+ + + E P++K++E +G S+E + + ++ +L F G Y + + Sbjct: 1 MSDKDSSEEREEEPTAKRLEKGREDGQVARSQELGVAAMMIGVAFFLYLF---GSY-IIA 56 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 DL + AS ++ + D S +V ++++ +V+P +L ++ I S I + Sbjct: 57 DLTKVFASGFTFDRKAVFDTSLLVPAFGIQAVNSFIVVVPIFVLAVIIAIASAGIMGGYI 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLD 175 +L + P +++ G+KR++ + +V+ K+ K L+ ++ + ++ N+ T L Sbjct: 117 FSLKSLAPKASKINPMAGLKRMFGMKAVVDLSKALSKFALIALVLYLVVSANFPMLTKLG 176 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 F+ P VL+ + L +A +DI + H + ++KM+KQE+K+E+K Sbjct: 177 FMDLEPAMAEAGRIIAFGTVLVTLTLIVAA--AIDIPYQLHTFNKQMKMTKQEVKEEMKD 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G P +K + + R MM A + A ++I NP H+A+AL Y ++N AP++VAKG Sbjct: 235 TEGRPEVKAQIRRKQREIATGMMMSAIADADVVIVNPEHFAVALSYDPSKNGAPIMVAKG 294 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +L+AK +R+ A E IP+F P LARS+F IN ++P Y AVAQ+I I++ Sbjct: 295 ADLLAKAIRERAKEEGIPLFSSPVLARSIFYTTEINQSVPESLYYAVAQVIAYIFN 350 >gi|271500057|ref|YP_003333082.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586] gi|270343612|gb|ACZ76377.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586] Length = 383 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 108/359 (30%), Positives = 187/359 (52%), Gaps = 19/359 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ KTEAP+ ++ E A EG P S+E + ++A L L + S S+ L Sbjct: 3 DDSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGS----SMAGRLS 58 Query: 64 VLLASA---------TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 ++A +R + ISH+ LL L+ ++P L ++ +G+ ++ Sbjct: 59 DMMAKGLIFDHGFINDERLI--ISHVGTLLEQAVLA----LVPILFGLVLVALGAPILLG 112 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + + F +++ G+KR++S L K+ +K ++VG I L N+ +ML Sbjct: 113 GLIFSTKAISFDFGKMNPLSGLKRMFSTQVLAELFKAILKAVIVGLITFWFLRHNWNSML 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S + A ++L + + D+ W +L+MSKQEI+DE K Sbjct: 173 HLVSEPMGMAIKDALNIAFLCCFWVILGLFPMVGFDVAWQIWSHIKRLRMSKQEIRDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P IKNR + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AK Sbjct: 233 EHEGDPHIKNRIRQQQRAMAQRRMMSDVPKADVIVTNPTHYAVALKYDEKKMSAPRVLAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + IA+++R++ E+ IPI E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 293 GADRIAQRIRELGTENRIPILEAPPLARALYRHTEIGQQIPTGLYAAVAEVLSWVYQLK 351 >gi|125973005|ref|YP_001036915.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC 27405] gi|256004802|ref|ZP_05429777.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM 2360] gi|281417216|ref|ZP_06248236.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20] gi|125713230|gb|ABN51722.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC 27405] gi|255991252|gb|EEU01359.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM 2360] gi|281408618|gb|EFB38876.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20] gi|316940759|gb|ADU74793.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM 1313] Length = 392 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 120/356 (33%), Positives = 187/356 (52%), Gaps = 17/356 (4%) Query: 8 DN--KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 DN KTE + +K A EG SRE + +L+ + L F G Y L L Sbjct: 39 DNGEKTEKATPRKRSKAREEGQVLQSRELNSAIVLLSAFVTLRIF---GQYMYEEILKCL 95 Query: 66 LASATQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 + T L D I + L ++ ++ P L++ ++ GIGS Q + Sbjct: 96 KVAITVYPLNDGLFTIDGLFELYGETVITFLKIATPVLMVVLIAGIGSAYAQVGFLFTTK 155 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFI 177 + R++ +G KRI+S+ +LV +KS +KI LVG I I +T N M+D Sbjct: 156 TLGIKLSRINPLKGFKRIFSLKSLVELLKSIIKIALVGYIGYGYIKGEMT-NVLGMMDVD 214 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + S L T+ I + + + V D G+ + ++ L+MSKQEIK+E K+ Sbjct: 215 VVSSASFLGS---TILNAAIRMCIAFVVIGVADYGYQWWEYEKSLRMSKQEIKEENKEVE 271 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK+R + R +M++ +A ++ITNPTHYA+A++Y E DAPV+VAKGQ+ Sbjct: 272 GNPEIKSRIRQKQRQMSMRRMLQDIPKADVVITNPTHYAVAIKYDPKEADAPVVVAKGQD 331 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++++IA EH + I E LA++L+K V I IPP Y+AVA+++ +Y K Sbjct: 332 YMALRIKEIAKEHKVEIVENKPLAQTLYKTVEIGGKIPPELYQAVAEVLAFVYSLK 387 >gi|291288733|ref|YP_003505549.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM 12809] gi|290885893|gb|ADD69593.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM 12809] Length = 352 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 104/339 (30%), Positives = 189/339 (55%), Gaps = 4/339 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA NEGN SRE ++L + + +++ P + + L + Sbjct: 6 EKTEDPTGKKLTDAKNEGNVAKSRELPAAVTLL-LVTFFFYYYGPYLMHGLARLIREIFM 64 Query: 69 ATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 T ++ S H + L + + +++L+ P + L ++ G+ S ++Q + + Sbjct: 65 MTNYEINTQSAHKIMLFS--IIESAKLLAPFMALVLVVGVASNVLQTGFMFTPKALSAKL 122 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R+ +G R +S +LV MKS K+ +V + + + ++ T++ + + I Sbjct: 123 ERIDPIKGFGRFFSKKSLVELMKSLFKVFVVTYVAYLIVKKHIVTIISMADMDFYDIFSV 182 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V +++ + L + + D + +Q+ LKMSK E+K+E KQ+ G+P +K R + Sbjct: 183 FGKIVYEIMWKVSLLALFMALADFIFQKYQFKQDLKMSKHEVKEERKQAEGDPHVKGRIR 242 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 SI R R +MM+ ++ +++TNPTH+A+AL+Y E+ APV++AKGQ L+A ++++IA Sbjct: 243 SIQREMARKRMMDDVPKSDVVVTNPTHFAVALKYSPGEDRAPVVMAKGQRLMALRIKEIA 302 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + I + E+P +ARSLFK V I IP YKAVA+++ Sbjct: 303 KQSGILVHEDPPIARSLFKTVDIGDEIPENLYKAVAEIL 341 >gi|266618907|ref|ZP_06111845.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf] gi|263528671|gb|EEZ28380.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf] Length = 413 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 65 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 124 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 125 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 183 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 184 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 243 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 244 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 296 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 297 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 355 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 356 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 410 >gi|299534768|ref|ZP_07048098.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1] gi|298729856|gb|EFI70401.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1] Length = 362 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 191/353 (54%), Gaps = 16/353 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +DA +G S++ S S+I+ ++++ FF G S+ +L Sbjct: 15 EKTEKATPKKRQDARKKGQVVKSQDIS--SAIVMLMVFIFLFFFAG--SLRDELLAFFRQ 70 Query: 69 ATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + I ++ L T + + +++P + + + + +Q + L +K Sbjct: 71 TFIHNIRIESLTIDSVMHLFTETLIQMAFIIVPIMAIAFVGALAGNFMQFGFLFTLEPMK 130 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 K++ +G+K+I+S+ +V +KS +KI +G++ TI + N +L +P Sbjct: 131 FDLKKMDPIKGLKKIFSVKAIVELIKSVLKIGFIGSVTTIIIWSNLPEVLALSFKSP--- 187 Query: 185 LYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + TV K++ I L + ++VLD + H++ LKMSKQ+IKDE K S G+P Sbjct: 188 -WMTLITVGKLVGIMGIAASLVLLCVSVLDWMYQKHEYEKNLKMSKQDIKDEYKNSEGDP 246 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK++ K R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA Sbjct: 247 LIKSKIKQRQREMAMRRMMSEVPSADVVITNPTHYAIALKYNEDSMDAPRVIAKGTDFIA 306 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K++ IA EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K Sbjct: 307 QKIKLIAKEHDVIMVENRPLARAMYDQVEIGDQVPEEFFKAVAEILAYVYRIK 359 >gi|33592472|ref|NP_880116.1| flagellar biosynthesis protein FlhB [Bordetella pertussis Tohama I] gi|33572118|emb|CAE41658.1| flagellar biosynthetic protein FlhB [Bordetella pertussis Tohama I] gi|332381889|gb|AEE66736.1| flagellar biosynthesis protein FlhB [Bordetella pertussis CS] Length = 384 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 176/350 (50%), Gaps = 15/350 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+EA S +++E A EG SRE F + A + G++ S L+ L Sbjct: 8 EKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVA--------GVWLSGSMLYQGLTG 59 Query: 69 ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 +R L +D +V H + A V+P + + + S ++ V + Sbjct: 60 VLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTK 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P+F ++SL GIKR++S +V +K+ K LVG + + + ML + P Sbjct: 120 PLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAP 179 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + L A V +I+ + + +LD+ W KL+M+K++++ E K+ G+P Sbjct: 180 SAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDPH 239 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K R + R+ R +MM A +++TNPTHYA+AL+Y AP +VAKG LIA Sbjct: 240 VKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAA 299 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ Sbjct: 300 RIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQ 349 >gi|294339803|emb|CAZ88166.1| Flagellar biosynthetic protein FlhB [Thiomonas sp. 3As] Length = 373 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 194/369 (52%), Gaps = 38/369 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL----ACLIYLL--FFFSPG 54 M+E+ A + + A S K+ + A +G ++R L SS+L A ++Y +F+ G Sbjct: 1 MAEDSAQEKELPA-SQKRKQQAREKGQ--VARSRDLTSSLLLLGMAAVVYTAGGWFYDMG 57 Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--------LLFMMFG 106 + + L V ASA+Q D + ++ +A R+++ GL L F+ Sbjct: 58 RELLQTGLTVS-ASASQ----DPAAML-------QAAGRVLVLGLIVLAPVLALTFVASA 105 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 G + V + + P F R+ +GI R++SI L K+ +K I++ I I + Sbjct: 106 AGGVAMGGW-VFSTEALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVI 164 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKL 222 +L + P A + ++ L++A+ T+L D+ W Q KL Sbjct: 165 WNERGELLGLLQVEPQ----LAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKL 220 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 KMS+Q+++DE+++S GNP IK + + + R R R +MM A +A +++TNPTHYA+AL Y Sbjct: 221 KMSRQDLQDEMRESEGNPQIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYK 280 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + +N APV++A G + +A ++R++A EHN+P+ E P LAR+L+ + IP Y AV Sbjct: 281 EGKNRAPVVLALGADRVAARIREVAAEHNVPVIEAPPLARALYHHAELEQEIPVALYNAV 340 Query: 343 AQLIYKIYH 351 A L+ ++ Sbjct: 341 ALLLAYVFQ 349 >gi|242238960|ref|YP_002987141.1| flagellar biosynthesis protein FlhB [Dickeya dadantii Ech703] gi|242131017|gb|ACS85319.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech703] Length = 383 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 189/358 (52%), Gaps = 17/358 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ KTEAP+ + E A EG P SRE +SI+ ++ L + G V L Sbjct: 3 DDSDLEKTEAPTPHRKEKAREEGQIPRSRE---LTSIMMLVVGLGILWMAGDI-VARRLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTH----LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 +LL+ E IS +L H L L S LV P +L ++ I + ++ + + Sbjct: 59 LLLSQGLFFTHEMISDDKQMLKHMLGLLKLGGSALV-PIILGTVVVAIAAPVMLGGLIFS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++ + +++ GIKR+ S L K+ +K ++VG I ++ L N+ +L +S Sbjct: 118 TKQMEFNLNKLNPISGIKRLVSSQMLAELFKAILKAVVVGGITSLFLWHNWQDILRLVSE 177 Query: 180 NPHSI----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 S L+ A F VLI ++ + D+ W KL+MSKQ+I+DE KQ Sbjct: 178 PLFSAVTDSLHFAIFCGFFVLIGLIPMVG----FDVFWQIWSHLKKLRMSKQDIRDEFKQ 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P +K R + + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG Sbjct: 234 NEGDPHVKGRIRQLQRAMAQRRMMADVPKADVIVTNPTHYAVALQYNEQKMSAPKVLAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA K+R++ EH IPI E P LAR+L+K I IP Y AVA+++ +Y K Sbjct: 294 AGEIALKIRELGNEHKIPILEAPPLARALYKHSEIGKNIPSTLYAAVAEVLVWVYQIK 351 >gi|85859183|ref|YP_461385.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus SB] gi|85722274|gb|ABC77217.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus SB] Length = 354 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 194/355 (54%), Gaps = 5/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ +TE + K+ E+A +G SR+ + + + ACL+Y F + ++ + Sbjct: 1 MAESNKDQERTEEATPKRREEAREQGQVAKSRDLASVAILSACLLYFYFGANSFLHQLMD 60 Query: 61 DLHVLLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + +S + E+I ++F + +++ L+ P LL+ + + S ++Q + Sbjct: 61 LMKSSFSSLDSSLVTTENIQSLLFSAFYKTIT---LMTPFLLVVCIAALSSNILQVGFKI 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P ++ +G R++S+ +L+ F+KS KI + G + +++ +L Sbjct: 118 STKAIAPKLSKIDPAKGFARLFSLQSLIEFIKSIFKISIAGFVAYLTVKSELVDILPLAD 177 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 ++ IL + T ++L+ + L ++D + ++ LKMS+QEIKDE KQ+ G Sbjct: 178 SSVWEILVYITGTSFRILLTTCWVLIILALMDYLYQRWEYERNLKMSRQEIKDENKQTEG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +PI+K R + + R + +MM +A +IITNPTH A+AL+Y Q AP ++AKG Sbjct: 238 DPIVKARIRRLQREMAQRRMMANVPKADVIITNPTHLAVALQYDQDSMIAPKVIAKGAGY 297 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+++IA E +P+ E LA+ L+K V ++ IP YKAVA+++ IY K Sbjct: 298 LAEKIKEIARESRVPLVENKPLAQVLYKMVEVSGTIPDSLYKAVAEILAYIYSIK 352 >gi|16125329|ref|NP_419893.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15] gi|221234068|ref|YP_002516504.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000] gi|1147737|gb|AAA85127.1| third gene in fliQ operon; membrane protein homolog [Caulobacter vibrioides] gi|13422379|gb|AAK23061.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15] gi|220963240|gb|ACL94596.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000] Length = 361 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 112/369 (30%), Positives = 201/369 (54%), Gaps = 33/369 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGN----APISREASLFSSILACLIY-------LLF 49 M+++ P++KTE PS+KK+ DA +G+ A I + ASL ++ L+ L+ Sbjct: 1 MADDTDPESKTEEPSAKKLSDARAKGDVIKSADIPQLASLAGAVSVILLAGGWLTRDLMA 60 Query: 50 FFSP-----GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104 +P G ++S +++ +V ++T + +A+ + G LL Sbjct: 61 ALTPFIAHAGTIDLSSGGAMIVLKQALLAALPALVLVMVVTAFAGAAAHIAQTGFLL--- 117 Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 +KP F+++ L +G+ RI+ + +V F+KS VK +L G I Sbjct: 118 --------------TPEKIKPDFQKLDLIKGLGRIFGPDGMVQFLKSAVKFLLTGVIAYF 163 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 L + + + + +P +++ A + +LI ++L + + D W ++ ++++M Sbjct: 164 VLKPHVGEVRNLVGMDPAAMIPEAMKLSKGLLIAVILLLVATSAFDYFWQRMRFMNRMRM 223 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 + QE+K+E KQS G+P IK +++ I R R +MM+A +AT+++ NPTHYA+AL+Y Q Sbjct: 224 TLQEVKEEFKQSDGDPHIKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEQG 283 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E AP+ VAKG + +A K+R +A EH +P+ E+P LAR+L+ V I+ IP ++AVA+ Sbjct: 284 ETPAPLCVAKGVDDLALKIRAVAEEHGVPVLEDPPLARALYASVEIDEEIPVEHFEAVAK 343 Query: 345 LIYKIYHKK 353 +I I + K Sbjct: 344 VISFILNGK 352 >gi|114765217|ref|ZP_01444349.1| flagellar biosynthesis protein B [Pelagibaca bermudensis HTCC2601] gi|114542352|gb|EAU45380.1| flagellar biosynthesis protein B [Roseovarius sp. HTCC2601] Length = 375 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 185/353 (52%), Gaps = 12/353 (3%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +++ DNKTE P+ +K+ A +G+ S+EA ++L+ F + Sbjct: 3 DQDEDKDNKTEEPTERKLRKAREKGDVASSKEAGNVMAVLSLFAITAFVLPSVSAPLAGV 62 Query: 62 LHVLLASATQ-------RKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 +L SA Q L D+ + + +L + + L+ P + L ++ + +Q Sbjct: 63 FRNVLESAGQVHVGTDLSGLRDLGAVSWKVLRGVGI----LLGPLMALMVIGALAGVALQ 118 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 V+ +KP + ++S G KR++S+ V F KS K++LVG I + + Sbjct: 119 GEVVVASERLKPKWSKISPISGFKRLFSLAAFVEFFKSVTKVLLVGVIAGWVVLNAVGQI 178 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 P + ++L++ L ++ + V DI W K +MS +EIKDE+ Sbjct: 179 WQTQGLVPEMVTDFIRAEAARMLLITLALVSVIAVADILWKRFDHRRKQRMSMKEIKDEV 238 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G+P+I++++ +I R R R ++ +A RAT+++TNPTH+A+AL+Y + APV VA Sbjct: 239 KETEGDPLIRSKRMNIRRERARQRLAQAVPRATVVLTNPTHFAVALKYENGVDMAPVCVA 298 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG +L+A ++R++A E+ IP+ E LAR+L ++ IP ++AVA +I Sbjct: 299 KGADLLAARIRELAKENEIPMVENRPLARALHDVAELDRPIPVEHWEAVAAII 351 >gi|119897394|ref|YP_932607.1| flagellar biosynthesis protein FlhB [Azoarcus sp. BH72] gi|119669807|emb|CAL93720.1| flagellar biosynthetic protein FlhB [Azoarcus sp. BH72] Length = 381 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/352 (30%), Positives = 188/352 (53%), Gaps = 9/352 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE S +++E A EG P SRE S F + ++ L G + L Sbjct: 3 EDSDLEKTEPASGRRLEQAREEGQVPQSRELSTFLVTMTGVVTLWLL---GEWMAQRLLG 59 Query: 64 VLLAS-ATQRKLEDISHIVFLLTHLSLSASRLV--IPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ S A +R++ H + L SL L+ +P L ++ + S + V Sbjct: 60 MIRRSFAFEREMA-FDHTLILAELQSLLGGALLTLMPLFLALLVAAVASPIALGGLVFAP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F R++ +G+ R++S++ L +K+ +K +LVG + L + D + Sbjct: 119 KALGPNFGRMNPIQGLGRMFSVHGLAEMVKAILKALLVGGVGAAVLWYYKDHLFDLM-VE 177 Query: 181 PHSILYHAFF-TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P + F TV ++I + L +LD+ + Q++ +L+M+K+E+K E K+ G+ Sbjct: 178 PLEVGMPDFAETVVFTALLITASLGLLALLDVPFQLWQYHKRLRMTKEEVKREAKEQDGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R +++ R R +MM A +A +++TNPTH+++AL+Y APV+VAKG+ + Sbjct: 238 PQLKGRIRAMQREMARGRMMAAVPKADVVVTNPTHFSVALKYDAERMGAPVVVAKGRGEL 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A K+R+IA E+++P+ E P LAR+L+ + AIP Y AVA+++ +Y Sbjct: 298 AMKIREIARENDVPLLEAPPLARALYAHCELEQAIPAALYTAVAEVMAYVYQ 349 >gi|260757056|ref|ZP_05869404.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str. 870] gi|260677164|gb|EEX63985.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str. 870] Length = 165 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 118/160 (73%) Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P++K+R +S+ R R Sbjct: 3 RLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGRDR 62 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+IP Sbjct: 63 ARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIP 122 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 123 VFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 162 >gi|326796452|ref|YP_004314272.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea MMB-1] gi|326547216|gb|ADZ92436.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea MMB-1] Length = 378 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 108/356 (30%), Positives = 195/356 (54%), Gaps = 7/356 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE SSKK++DA +GN ++R L S+ L + + +F+ I ++ Sbjct: 1 MAENEDGTEKTEDASSKKLDDARKKGN--VARSKDLSSAALLIVAAMSIYFTGRILAI-- 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LN 119 DL L + +D+ ++ HL SA ++ +LL + + + LN Sbjct: 57 DLGNLFHFNFVIERQDLFDKARMIFHLYESAVGVIDSMILLMGVLAVAGIVGSIGIGGLN 116 Query: 120 LNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P +++ G+KRI S+ +LV +KS K++LVG+I T+ + +L Sbjct: 117 FSWEPLTPKLSKLNPISGLKRIASVQSLVELLKSIAKVLLVGSIATVVIMLYLPELLGLP 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + + H+ + I + L + + +DI + + + LKM+KQE+KDE KQ+ Sbjct: 177 FESVGNAVQHSTEVLIWAFIFVSLALVFIAAIDIPFQIWKHSNDLKMTKQEVKDEHKQAE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + + ++MM +A +IITNPTH+++AL+Y T +DAPV++AKG + Sbjct: 237 GDPQVKGRIRQMQQQMAMNRMMSDVPKADVIITNPTHFSVALKYDTTSSDAPVVLAKGPD 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA K+R++A + IP+ + P L R+++K + +P +K VAQL+ ++ K Sbjct: 297 FIAMKIREVANFYEIPVIQSPDLTRAIYKHTEVGEQVPEGLFKVVAQLLAYVFQLK 352 >gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] Length = 609 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + IP+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEIPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] Length = 587 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 105/348 (30%), Positives = 188/348 (54%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 239 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 298 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 299 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 357 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 358 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLKDNYLKILNLGTLRPWYMI 417 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + ++V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 418 TGLLSLAISIFFKITLIMLFISVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 477 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 478 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDSAPKVVAKGADYVAIKIKD 536 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 537 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 584 >gi|269836606|ref|YP_003318834.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM 20745] gi|269785869|gb|ACZ38012.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM 20745] Length = 361 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 102/344 (29%), Positives = 183/344 (53%), Gaps = 1/344 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE + K+ +DA +G+ P S E S + +L L +L ++ ++T Sbjct: 3 EERTERATPKRRQDARRQGDVPRSAELSAAAGLLGALAFLQWYGGQAAGALTGYFRGTFG 62 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + L ++ I L + +R+V P + + ++ GI + + Q PV L +KP F Sbjct: 63 GLSPSDLTPLA-IQNLAWESGMVFARVVGPLVAVVLVVGIAAGVAQTGPVFALAALKPDF 121 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 KR++ G+KRI+S K+ VK++++ + L A+P SI Sbjct: 122 KRINPAAGLKRIFSRRGAFETFKALVKLVIIAALTYPVLRAEVAHFASLTGAHPVSIAEA 181 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 T+ KV + L + D + ++ +L+M++QE+++E++Q GNP +K+R + Sbjct: 182 VGRTLVKVGLRAAGAFFILALADYAFQRWEYERRLRMTRQELREELRQIEGNPELKSRIR 241 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R R +MM A +AT+++TNPTH A+A+RY APV+VAKG L A+++++IA Sbjct: 242 QLQRQLARGRMMHAVPKATVVVTNPTHLAVAIRYEMRTMPAPVVVAKGSGLTAERIKQIA 301 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 EH +P+ E LA++L++ + + IP Y+AVA +I +Y Sbjct: 302 REHAVPVVENKPLAQALYRMADVGAEIPVALYEAVADVIAYVYR 345 >gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402 065] Length = 609 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGTNELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] Length = 609 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B1 str. Okra] gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1 str. Okra] Length = 609 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|51596001|ref|YP_070192.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 32953] gi|51589283|emb|CAH20904.1| flagellar biosynthetic/export protein FlhB [Yersinia pseudotuberculosis IP 32953] Length = 386 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 113/362 (31%), Positives = 189/362 (52%), Gaps = 25/362 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+E P++ K+E A +G P SRE +S+L L + G S+ L Sbjct: 3 EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58 Query: 64 VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 ++A S ++ L I ++ LL L + A LVI L + M+ G G Sbjct: 59 AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + +K KR+S G+KR++S L +K+ +K LVG + + L N+ Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M+ I+A P + L A + ++++L ++ + D+ + KL+M+KQ+I+D Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G+P +K R + R+ R +MM +A II+TNPTHYA+AL+Y +++ AP + Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADIIVTNPTHYAVALQYNESKMSAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG +A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 3502] gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. Hall] gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC 3502] gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. Hall] Length = 609 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|91776296|ref|YP_546052.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus KT] gi|91710283|gb|ABE50211.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus KT] Length = 381 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 192/357 (53%), Gaps = 19/357 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE P+ ++IE A +G+ P SRE S ++A + L+ S ++ S++ Sbjct: 3 QDSDLEKTEQPTPRRIEKAREDGDVPRSREFSTCVVLMAGGLGLMMLGSRLNQAMLSNM- 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNL 120 S+ + E LL+ ++ L+I P +LL ++ +G+ ++ + N Sbjct: 62 ---ISSLRISREAAFDFSLLLSKIASGVLDLLIAFAPLILLLLVVIVGAPVL--VGGWNF 116 Query: 121 NHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ P F +++ GIK ++S N+LV +K+ +K LVGT+ + + ++ T+L Sbjct: 117 SNKAFLPKFSKLNPLNGIKNLFSKNSLVELIKAILKAALVGTVSYMVMAHDFDTLLSL-- 174 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIK 234 P L V +LI LFI + VL D+ + + +KLKM+K+E+K E K Sbjct: 175 --PTQPLETGIAQVDDILIKGFLFIVSALVLVALIDVPYQRWSYTNKLKMTKEEVKQEAK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 +S GNP IK R + R R +MM +A ++ITNPTHYA+A++Y AP ++AK Sbjct: 233 ESDGNPQIKGRIRQQQREMARRRMMAEIPKADVVITNPTHYAVAIKYDDQSMAAPRVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G + IA K+R+IA EHN+ I E P LAR+LF + IP Y AVA+++ ++ Sbjct: 293 GADDIALKIREIAGEHNVAILESPKLARALFAHTELGDEIPQALYAAVAEILAYVFQ 349 >gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] Length = 609 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] Length = 609 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAIALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|293395574|ref|ZP_06639857.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582] gi|291421893|gb|EFE95139.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582] Length = 391 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 111/358 (31%), Positives = 186/358 (51%), Gaps = 21/358 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-------IY 56 D+ K+EAP+ ++E A EG P SRE +SIL + L + G Sbjct: 11 EDSDLEKSEAPTPHRVEKAREEGQIPRSRE---LTSILMLIAGLAILWVGGSNLARQLAQ 67 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 +T LH + + H + +L ++ A V+ GL+L + L+ I Sbjct: 68 MLTDGLHFDHGMVNNDR--QMLHQLGMLLRQAVWALLPVMAGLVLVAL--TAPMLLGGI- 122 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + +K KR++ G+KRI+S L +K +K +LVG + + L N+ ML Sbjct: 123 LFSGKSLKFDLKRLNPLSGLKRIFSSQVLAELLKGVLKALLVGWVTGLFLWHNWAAMLHL 182 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEI 233 ++ P L +A V ++++L + + D+ ++Q +S KLKM+KQ+I+DE Sbjct: 183 VTQQPLDALANALQMVVFCGLLVVLGLVPMVAFDV---FYQLWSHIKKLKMTKQDIRDEF 239 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K+ G+P +K R + ++ R +MM +A +I+TNPTHYA+AL+Y + AP ++A Sbjct: 240 KEQEGDPHVKGRIRQQQQAIARRRMMSDVPKADVIVTNPTHYAVALQYNDKQMSAPRVLA 299 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG IA ++R++A +H IP E P LAR+L++ I IP Y AVA+++ +Y Sbjct: 300 KGAGEIALRIRELAAQHRIPTLEAPPLARALYRHSEIGQHIPTTLYAAVAEVLAWVYQ 357 >gi|167470753|ref|ZP_02335457.1| flagellar biosynthesis protein FlhB [Yersinia pestis FV-1] Length = 386 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 25/362 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+E P++ K+E A +G P SRE +S+L L + G S+ L Sbjct: 3 EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58 Query: 64 VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 ++A S ++ L I ++ LL L + A LVI L + M+ G G Sbjct: 59 AMVAQGLHFGHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + +K KR+S G+KR++S L +K+ +K LVG + + L N+ Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M+ I+A P + L A + ++++L ++ + D+ + KL+M+KQ+I+D Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP + Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG +A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|251789159|ref|YP_003003880.1| flagellar biosynthesis protein FlhB [Dickeya zeae Ech1591] gi|247537780|gb|ACT06401.1| flagellar biosynthetic protein FlhB [Dickeya zeae Ech1591] Length = 383 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 186/357 (52%), Gaps = 15/357 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ KTEAP+ ++ E A EG P S+E + ++A L L + S S+ L Sbjct: 3 DDSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGS----SMAGKLT 58 Query: 64 VLLASA---TQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 ++A + D ISH+ LL L+ ++P L ++ + + ++ Sbjct: 59 DMMAKGLIFDHNLISDERLFISHVGALLKQAMLA----IVPILFGLVLVALAAPVLLGGL 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + + F +++ G+KR++S + L K+ +K ++VG I L N+ +ML Sbjct: 115 IFSTKAISFDFGKLNPLSGLKRMFSTHVLAELFKAILKAVIVGCITYWFLLHNWNSMLHL 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 +S + A +++ + + D+ W +L+MSKQEI+DE K+ Sbjct: 175 VSEPMGIAIKDALNIAFLCCFWVIMGLFPMVAFDVAWQIWSHIKRLRMSKQEIRDEYKEH 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK R + R+ + +MM +A +I+TNPTHYA+AL+Y + + +AP ++AKG Sbjct: 235 EGDPHIKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMNAPKVLAKGA 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A+++R++ E+ +PI E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 295 DRVAQRIRELGAENRVPILEAPPLARALYRHTEIGQQIPAGLYAAVAEVLSWVYQLK 351 >gi|167420299|ref|ZP_02312052.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166961994|gb|EDR58015.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 390 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 25/362 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+E P++ K+E A +G P SRE +S+L L + G S+ L Sbjct: 3 EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58 Query: 64 VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 ++A S ++ L I ++ LL L + A LVI L + M+ G G Sbjct: 59 AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + +K KR+S G+KR++S L +K+ +K LVG + + L N+ Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M+ I+A P + L A + ++++L ++ + D+ + KL+M+KQ+I+D Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP + Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG +A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. 230613] Length = 609 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEDATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S+ FF + +I+LFIA V D + +Q+ LKM+KQE+K+E KQ G Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|308187224|ref|YP_003931355.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1] gi|308057734|gb|ADO09906.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1] Length = 383 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/357 (31%), Positives = 189/357 (52%), Gaps = 15/357 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++KTE+P++ ++E A EG P SRE + +LA ++ L G + L Sbjct: 3 EDSDEDKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWM----GGNMMAHRLA 58 Query: 64 VLLASA---TQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 ++A+ + D +SHI L+T +L A ++ GL+L I + ++ Sbjct: 59 AMVATGLRFDHGMVRDDKIIVSHIGSLITQ-ALMALLPLMGGLVLV---AIAAPMLLGGL 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + +K K++S G KR+++ K +K ILVG + + ++ ML Sbjct: 115 VFSGKSIKFDLKKMSPMAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRL 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 IS P + L H + +++L + + D+ W + + KLKMS QEI+DE KQ Sbjct: 175 ISEAPVTALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQ 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG Sbjct: 235 EGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGA 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++R++A EH IP+ E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 295 GEIALRIRELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 351 >gi|22126401|ref|NP_669824.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10] gi|45441419|ref|NP_992958.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108807160|ref|YP_651076.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua] gi|108812495|ref|YP_648262.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516] gi|145598622|ref|YP_001162698.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F] gi|149366261|ref|ZP_01888296.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125] gi|165925946|ref|ZP_02221778.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165938738|ref|ZP_02227293.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|166010865|ref|ZP_02231763.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166210428|ref|ZP_02236463.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|167401110|ref|ZP_02306613.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167425790|ref|ZP_02317543.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024657|ref|YP_001721162.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186895104|ref|YP_001872216.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis PB1/+] gi|218928912|ref|YP_002346787.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92] gi|229896231|ref|ZP_04511401.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A] gi|229897166|ref|ZP_04512322.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897892|ref|ZP_04513043.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. India 195] gi|229902876|ref|ZP_04517993.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516] gi|270486660|ref|ZP_06203734.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27] gi|294504041|ref|YP_003568103.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21959388|gb|AAM86075.1|AE013854_11 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45436280|gb|AAS61835.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108776143|gb|ABG18662.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516] gi|108779073|gb|ABG13131.1| flagellar biosynthetic protein FlhB [Yersinia pestis Antiqua] gi|115347523|emb|CAL20431.1| flagellar biosynthetic protein FlhB [Yersinia pestis CO92] gi|145210318|gb|ABP39725.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides F] gi|149292674|gb|EDM42748.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125] gi|165913352|gb|EDR31974.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|165922150|gb|EDR39327.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990209|gb|EDR42510.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166207608|gb|EDR52088.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|167049499|gb|EDR60907.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055189|gb|EDR64986.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751191|gb|ACA68709.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186698130|gb|ACC88759.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis PB1/+] gi|229680323|gb|EEO76422.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516] gi|229688933|gb|EEO80998.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. India 195] gi|229693503|gb|EEO83552.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701154|gb|EEO89183.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A] gi|262361772|gb|ACY58493.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262366091|gb|ACY62648.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|270335164|gb|EFA45941.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27] gi|294354500|gb|ADE64841.1| flagellar biosynthesis protein [Yersinia pestis Z176003] Length = 386 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 25/362 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+E P++ K+E A +G P SRE +S+L L + G S+ L Sbjct: 3 EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58 Query: 64 VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 ++A S ++ L I ++ LL L + A LVI L + M+ G G Sbjct: 59 AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + +K KR+S G+KR++S L +K+ +K LVG + + L N+ Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M+ I+A P + L A + ++++L ++ + D+ + KL+M+KQ+I+D Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP + Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG +A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|170748648|ref|YP_001754908.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans JCM 2831] gi|170655170|gb|ACB24225.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans JCM 2831] Length = 355 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 108/336 (32%), Positives = 180/336 (53%), Gaps = 8/336 (2%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL---LASAT 70 PS ++++ A+ G+ S E + F+ +L L +P I T+ LH L LA+A Sbjct: 14 PSQRRLDQAIERGDVATSTEINTFA-MLGAFTLALLVAAPTI--ATNLLHGLKAYLANAH 70 Query: 71 QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130 + + + L L + +P + L ++ G+ + L+Q V + + P F R+ Sbjct: 71 ALPDDAAAMKAAMTRGLWLWLQAVAVP-VGLAVVAGLAAGLLQHPLVFSAETLMPKFSRL 129 Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190 S G+KR+ + L F K KI VG + + L + + F +P + + Sbjct: 130 SPMAGVKRLLGVEALFQFGKGLAKIAAVGVVGAVMLWNDRDRLEVFARLDPAASMPAILS 189 Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 K+L +L +T+ D ++ +W + +MSK+E+K E+K+S GNP +K R K + Sbjct: 190 LSLKLLAGMLCMHLAITLGDALYARFRWRKRHRMSKEELKQEMKESEGNPEVKGRLKQLR 249 Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310 +R++ +MM A AT+++TNPTHYA+ALRY +T APV VAKG + +A ++R +A EH Sbjct: 250 MARVKKRMMAAVPTATVVVTNPTHYAVALRY-ETGMAAPVCVAKGVDALALRIRAVAAEH 308 Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + + E P LAR+L V I+ IP Y+AVA++I Sbjct: 309 GVAVIENPPLARALHATVEIDREIPAEHYRAVAEVI 344 >gi|220932506|ref|YP_002509414.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168] gi|219993816|gb|ACL70419.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168] Length = 356 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 104/341 (30%), Positives = 186/341 (54%), Gaps = 1/341 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE P+ +++ A +G S+E S +++ + L F IYS+T+ + L+ Sbjct: 9 KTEKPTPRRLRKARQQGQVAKSQELSSAFTLMGGFLVLFFIIKNIIYSLTNRMSYFLSLE 68 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 K+ D++ + L+ A RL+ P LL + G+ +Q P+ + +KP K+ Sbjct: 69 AYNKINDVNSLYILIDSFYFIA-RLISPVLLASAIIGLVVNFLQVGPLFVPDLIKPDLKK 127 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ G KR++S+ ++V +KS KI +V + + L ++ T+++ + + Sbjct: 128 INPISGFKRLFSLKSVVELIKSLFKIAIVAILAYLQLKNSWQTLINLSRQGITEAVAYLG 187 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + KV I I++ + L + D + ++ LKM+KQE+K+E K+ G+P IK++++ Sbjct: 188 HLIFKVAITIIICLVVLGIADYIYQKWEYIRNLKMTKQEVKEEHKEIEGDPRIKSKRREK 247 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R ++M++A A ++ITNPTH A+AL+Y +APV+VAKG+ IAKK+++ A E Sbjct: 248 QREMTLNRMIKAMEEADVVITNPTHIAVALKYDINSMEAPVVVAKGEGFIAKKIKEKARE 307 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 I I E LAR+L I IP Y+AVA+++ +Y Sbjct: 308 LKIEIVENKPLARALNATTEIGEEIPVDLYQAVAEVLAFLY 348 >gi|330720472|gb|EGG98776.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC2047] Length = 378 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 191/359 (53%), Gaps = 17/359 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D+ KTE + K++EDA +G+ P S+E + + +L LL F +++ Sbjct: 1 MAESDSGQEKTEEATPKRLEDAKKKGDIPRSKELNTTAILLGGTGALLAFGG----GISA 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASR---LVIPGLLLFMMFGIGSYLIQRIPV 117 L ++++ + +DI +L HL S + +IP ++ M+ I + V Sbjct: 57 GLSNMMSANFRFSRDDIFDPQVMLIHLGQSMAESMMALIPFFIVVMLAAIIGPIALGGWV 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTML 174 ++ + P +R+S GIKR+++ L+ +K+ K +LV T +I +T + + Sbjct: 117 MSGKSLAPKGERISPLAGIKRMFAKQALMELLKTIAKFLLVATLSLVILDFMTNDILAIA 176 Query: 175 --DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 D I A H++ + + MIL+ +++D+ + KLKM+ QE+KDE Sbjct: 177 KEDTIPAMAHTLRIVGWSVLAMSCTMILI-----SIIDVPFQISSHAKKLKMTMQEVKDE 231 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K + G P +K+R + + + +MM A A ++ITNP HYA+AL+Y AP+LV Sbjct: 232 MKNTEGKPEVKSRIRQLQYDMAQGRMMSAVPEADVVITNPEHYAVALKYNSDNMGAPLLV 291 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 AKG + IA K+R+IA H+IP+ E P LAR++F + IP Y AVAQ++ ++ Sbjct: 292 AKGADHIAFKIREIAKAHDIPVLEAPPLARAVFYSTELEQEIPAGLYVAVAQVLAYVFQ 350 >gi|57168473|ref|ZP_00367607.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228] gi|305432892|ref|ZP_07402050.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20] gi|57020281|gb|EAL56955.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228] gi|304444046|gb|EFM36701.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20] Length = 362 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 114/363 (31%), Positives = 198/363 (54%), Gaps = 44/363 (12%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGIY 56 KTE P+SKKIEDA EGN P S++A+ +++ + LF Sbjct: 8 KTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIVGFVITLFMMGFIGERITNLYRYYQSFI 67 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRI 115 V DL ++ A ++ I ++ LL + LS ++I G+L M FG ++ Sbjct: 68 GVEFDLRIIQAIM----IKSIFEVLILLAPIVLS---IMIAGILGNVMQFG---FIFTTK 117 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 P++ P+ +++ +G+K ++S+ LV +K +K VG + T++ + +L Sbjct: 118 PIM------PNLGKINPLKGLKNLFSLKKLVESVKIVLK---VGVVFTVA----FIVLLK 164 Query: 176 FISANP----HSILYHAFFTVRKVLIMILLFIA---TLTVLDIGWSYHQWYSKLKMSKQE 228 F+ P ++I+ + + +I+ + I + VLDI Q++ L+MSKQE Sbjct: 165 FMQELPLVERYNIIGQLIWLRDRAIILAAIVIIAFLVIAVLDIFLVRFQYFKGLRMSKQE 224 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 IKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+A+RY T+ A Sbjct: 225 IKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTTKEQA 284 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P +VAKG + +A +++++AY++N+ ++E P LAR L+K IN IP +KAVA+++ Sbjct: 285 PRVVAKGVDFLALRIKQVAYDNNVVVYENPPLARELYKACDINDLIPREMFKAVAEVLGF 344 Query: 349 IYH 351 +Y+ Sbjct: 345 VYN 347 >gi|218778857|ref|YP_002430175.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans AK-01] gi|218760241|gb|ACL02707.1| Flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans AK-01] Length = 358 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 194/354 (54%), Gaps = 11/354 (3%) Query: 5 DAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-YSVTSDL 62 D+P ++KTE P+ KK +DA +G SR+ S ++A L +++ F P + Y +TS + Sbjct: 3 DSPNEDKTEQPTPKKRDDARKKGQVAKSRDLSSVVVLMAGL-GIMYMFGPYMHYHITSLM 61 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 ++ + +E+I+ + + L ++ P L + G S +Q + Sbjct: 62 ENIFTTDVSAWGVEEINTLGREMVREFLF---ILAPILAGVFVVGFASAAVQVGFYFSWE 118 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P F +++ G R++S LV KS K+ +VG I +++ ++ + Sbjct: 119 AAAPKFSKINPISGFGRMFSKQALVELAKSLAKLFIVGFISYLTIEAEMDNLILLGQVDA 178 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGN 239 + L + + K+ I + + + + VLD +++ +W+ +LKM+KQE+KDE KQ+ G+ Sbjct: 179 ANTLAYVLKIILKLFIRVGIIMVFVAVLD--FAFQKWHHEQQLKMTKQEVKDEYKQTDGD 236 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K R + I R +MME +A +++TNPTH ALA++Y AP++VAKG I Sbjct: 237 PMVKARIRRIQMEAARRRMMEEVPKADVVVTNPTHLALAIKYNALTMGAPLIVAKGAGPI 296 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K++++A E+++PI E LAR+L+K V I +P Y+AVA+++ +Y K Sbjct: 297 AQKIKEVARENDVPIVENKELARALYKVVDIGDEVPVALYEAVAEVLAYVYGLK 350 >gi|300717104|ref|YP_003741907.1| flagellar biosynthesis protein [Erwinia billingiae Eb661] gi|299062940|emb|CAX60060.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661] Length = 381 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 191/351 (54%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ + KTE+ + +IE A EG P SRE +S+L + L + G ++ + Sbjct: 3 GDSEEEKTESATPHRIEKAREEGQIPRSRE---LTSVLMLVAGLSILWITGA-TMARKIG 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LLA + D S ++ LL +L +IP + ++ I + ++ V++ Sbjct: 59 ALLADGLKFNHSVVSDTSQMLHLLGNLVQQGIFTLIPMMAGLVLVAIAAPMLLGGVVISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +GI +++S +KS +K ILVG + + + ++ ML IS + Sbjct: 119 KAIKFDVGKMNPIKGIGKLFSGQTAAELLKSVLKAILVGCVTWLYIRHHWPDMLRLISES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P++ L ++ + ++++ ++ + + D+ W + ++ L+M++Q+I+DE KQ G+P Sbjct: 179 PYNALANSLNMIAMCSVLVVFGLSPMVMFDVFWQLYSYFKGLRMTRQDIRDEYKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDERKMSAPKVVAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++ EH IPI E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 299 LRIRELGKEHRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQ 349 >gi|146312093|ref|YP_001177167.1| flagellar biosynthesis protein FlhB [Enterobacter sp. 638] gi|145318969|gb|ABP61116.1| flagellar biosynthetic protein FlhB [Enterobacter sp. 638] Length = 382 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/363 (29%), Positives = 196/363 (53%), Gaps = 29/363 (7%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILA-CLIY---------LLFFFSP 53 D D+KTEAP+ +++ A +G P SRE SL I+ C+I+ L S Sbjct: 3 DDSDDKTEAPTPHRLDKAREDGQVPRSRELTSLLILIVGVCIIWFGGGAFANRLAGMLSA 62 Query: 54 GI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 G+ +S+ +D +++L+ + ++ L++ + L A LV P +L ++F S Sbjct: 63 GLRFDHSIVNDQNLILSQIILLIKNAMIALLPLISGVVLVA--LVSPIMLGGLIFSGKS- 119 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 ++P F +++ GI +++S +K+ +K L+G+ L ++ Sbjct: 120 ------------LQPKFSKLNPFPGIAKMFSAQTGAELLKAILKSTLMGSTAGFYLWHHW 167 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 M+ +S +P + + +A V ++++L I + D+ + + KL+MS+Q+++ Sbjct: 168 PDMMRLLSESPLTAMRNAMDLVGFCAVLVVLSIIPMVGFDVFFQIYSHIKKLRMSRQDLR 227 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ G+P +K R + + R+ R +MME +A +I+TNPTHY++AL+Y + + AP Sbjct: 228 DEYKQMEGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALKYDENKMSAPK 287 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG LIA ++R+I E+ +P+ E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 288 VVAKGAGLIALRIREIGSENRVPVLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVW 347 Query: 351 HKK 353 K Sbjct: 348 QLK 350 >gi|89094442|ref|ZP_01167382.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] gi|89081334|gb|EAR60566.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] Length = 379 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/361 (28%), Positives = 187/361 (51%), Gaps = 23/361 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE P+ K+I +A +G+ P S+E + ++A + ++ F S + + Sbjct: 3 EDSGQEKTEDPTPKRIREAREKGDVPRSKELATTLVLMAAVFSVIIFSS----QLAESML 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121 ++ S + + +L H +SA ++ +F + + + L+ I + N Sbjct: 59 GMMESNFVLDRQSVFDTNKMLAHFEVSAEEAIMGLAGIFAVLALAA-LVGPIALGGWNFS 117 Query: 122 --HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTMLDF 176 + P R+ GIKR++S+ +L+ K+ K LVG +I ++ E+ + + Sbjct: 118 GQSIVPKGSRIDPLAGIKRMFSLKSLIELFKAIAKFSLVGGFAILILWTIREDILALASY 177 Query: 177 IS----ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + I+ F + VLI++ V+D+ + + + K++M+ QE+KDE Sbjct: 178 EARVAIDEALDIIIWVFMALSAVLILV-------AVVDVPYQLYDYTQKMRMTMQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K + G P +K R + + R + +MM+A A ++ITNPTHY++AL+Y APVL+ Sbjct: 231 LKNTEGKPEVKGRIRQLQREIAQRQMMQAVPEADVVITNPTHYSVALKYDGENRGAPVLL 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA EH+IPI P LAR+++ I+ IP Y AVAQ++ ++ Sbjct: 291 AKGADFVALKIREIAKEHDIPILSAPPLARAIYNSTEIDDEIPSGLYMAVAQVLAYVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|153947600|ref|YP_001401303.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 31758] gi|152959095|gb|ABS46556.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP 31758] Length = 386 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 112/362 (30%), Positives = 188/362 (51%), Gaps = 25/362 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+E P++ K+E A +G P SRE +S+L L + G S+ L Sbjct: 3 EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58 Query: 64 VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 ++A S ++ L I ++ LL L + A LVI L + M+ G G Sbjct: 59 AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + +K KR+S G+KR++S L +K+ +K LVG + + L N+ Sbjct: 115 -----LFSGESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M+ I+A P + L A + ++++L + + D+ + KL+M+KQ+I+D Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLLPMVGFDVFYQITSHIKKLRMTKQDIRD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP + Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG +A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|332284010|ref|YP_004415921.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7] gi|330427963|gb|AEC19297.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7] Length = 386 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/366 (29%), Positives = 182/366 (49%), Gaps = 32/366 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57 M+E D+ KTE S +++E A EG SRE + F +LA + L+ G+Y Sbjct: 1 MAE-DSDLEKTEPASPRRLEKAREEGQVARSRELNTFL-LLAAGVATLWLSGAGLYEGLT 58 Query: 58 ------------VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105 V D V++A A LE I LT L L V+ + + Sbjct: 59 DILRAGLWFDLRVGRDTDVMVALAATSALEAI------LTLLPLFG---VLVAVAILASV 109 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 +G +L L+ ++P F+R++ +G+ R++S LV +K+ K ++G + + Sbjct: 110 ALGGFL------LSGKALEPKFERLNPLKGMGRMFSAQTLVELIKTLAKASVIGIVAVMV 163 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 ++ M+ + A L V +I+ + + ++D W + Y K++MS Sbjct: 164 MSHYLDQMISLMHATVSEALTRGIGLVALCCALIVGGLILIVLIDAPWQIYSHYKKMRMS 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 ++++K E K+S G+P +K R + R+ R +MM A +I+TNPTHYA+AL Y + Sbjct: 224 REDVKQEHKESDGDPHVKGRIRQQQRAMARRRMMSEVPNADVIVTNPTHYAVALSYKDGQ 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG L+A ++R++A EH +P+ P LAR+L V + IP Y AVA++ Sbjct: 284 AGAPRVVAKGSGLVAARIREVAQEHKVPMLSAPPLARALHHHVELGKEIPGDLYAAVAEV 343 Query: 346 IYKIYH 351 + ++ Sbjct: 344 LAWVFQ 349 >gi|315638787|ref|ZP_07893959.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis JV21] gi|315481005|gb|EFU71637.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis JV21] Length = 356 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 192/364 (52%), Gaps = 44/364 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-------------LFFFSPGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + L L+ + Sbjct: 7 EKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVANLYRYYQSF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 V DL ++ A ++ I ++ +L + LS M+ GI ++Q Sbjct: 67 IGVEFDLRIIQAIM----MKSIFEVLIILAPIVLS-----------IMVAGIIGNVMQFG 111 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITISLTENYFTML 174 + + P+ +++ +G+K ++S+ L+ VKIIL VG + TI+ + +L Sbjct: 112 FIFTTKPIMPNLSKINPLKGLKNLFSLKKLI----ESVKIILKVGVVFTIA----FIVLL 163 Query: 175 DFISANPHSILY----HAFFTVRKVLIMILLFIATLTV---LDIGWSYHQWYSKLKMSKQ 227 F+ P LY + K LI+ + I + LD+ Q++ LKMSKQ Sbjct: 164 QFVKELPKVELYSLAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQ 223 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+ALRY T+ + Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKEN 283 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +++++AY+HN+ ++E P LAR L+K ++ IP +KAV+++ Sbjct: 284 APRVVAKGVDFLALRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFK 343 Query: 348 KIYH 351 +Y Sbjct: 344 FVYQ 347 >gi|251772429|gb|EES52996.1| flagellar biosynthetic protein FlhB [Leptospirillum ferrodiazotrophum] Length = 365 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/354 (31%), Positives = 191/354 (53%), Gaps = 8/354 (2%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +END + E P+S+++E A EG SRE F + A LI + + S + + D Sbjct: 4 NENDG-QLRQEEPTSRRLEKAREEGQVARSREVGYFFFLAASLILMASYGSRLVEGLRDD 62 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 + L + + L I + L L P L F++FG+ +Y++Q +++ Sbjct: 63 MSYYLRHSGEISLTP-DGITPFVKGLVLHEMGRTFPLLGGFLVFGVAAYIVQGGILVSPK 121 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + RVS +GIKR++S L ++ +K+++ I+ +L +++ T+ + Sbjct: 122 AAAIKWNRVSPSQGIKRLFSWRALEELLRYTIKVVVSLLILFYALKQDWMTLPALMETGA 181 Query: 182 HSI---LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 H + LYH F V L+ L A L + D + L+M++ EIK+E K++ G Sbjct: 182 HRMVGALYHFTFVV---LVSFLPLYAALAIGDYLFQRFMMMRGLRMTRTEIKEETKETEG 238 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P ++ R +SI R+ R +MM AT++ITNPTH+A+ L+Y APV+VAKG + Sbjct: 239 DPHVRARIRSIQRAMARRRMMSKIKDATVVITNPTHFAVVLKYHPESMAAPVVVAKGADE 298 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +A ++R+IA E +P+ E+P AR LF++ P++ IP FY+AVA+++ +Y + Sbjct: 299 VAFRIREIAREVGVPVVEDPPTARGLFRECPLDREIPFTFYEAVARILSILYQR 352 >gi|307731376|ref|YP_003908600.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003] gi|307585911|gb|ADN59309.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003] Length = 401 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 106/366 (28%), Positives = 185/366 (50%), Gaps = 47/366 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE+ + +++E A EG SRE S F+ L+ FF G+++++ + Sbjct: 8 EKTESATPRRLEKAREEGQIARSRELSTFA-----LLAAGFF---GVWAMSGSIG----- 54 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY----LIQRIPV------- 117 + L+D+ F H ++ +R MM G G+ L +P+ Sbjct: 55 ---QHLQDMLRTAFTFDHATVFETRR--------MMTGAGTASREGLYALLPILALTGAA 103 Query: 118 ------------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 L+ ++P F R++ G+ +I+SIN V + S K ++VG I + Sbjct: 104 ALLAPMALGGWQLSTKGLEPKFDRLNPIAGLGKIFSINGPVQLVMSIAKTLVVGIIGGTA 163 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + +L + H L + + M + + + LD+ + Q++ KL+MS Sbjct: 164 IWNRREEILALSTQPLHLALANTVHLIAVCCAMTVAGMFVVAALDVPYQLWQFHKKLRMS 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E+K E ++S G+P +K R + R+ R +MM +A +++TNPTH+A+AL+Y E Sbjct: 224 KEEVKREHRESEGDPHVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGE 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG NL+A ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA++ Sbjct: 284 MRAPKVVAKGVNLVAARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEV 343 Query: 346 IYKIYH 351 + +Y Sbjct: 344 LAWVYQ 349 >gi|317403765|gb|EFV84247.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans C54] Length = 384 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 182/345 (52%), Gaps = 5/345 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTEA S +++E A EG SRE F +LA + ++ IY S + + Sbjct: 8 EKTEAASPRRLEKAREEGQIARSRELGTFM-MLAVGVGAIWAGGGTIYKGLSGVLRNGLA 66 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 QR + D +V + A +++P GLL + + S L+ I V++ + P+ Sbjct: 67 FDQRVVADPGVMVEQAVNGFGHALMVILPIFGLLAVIAV-LSSVLLGGI-VISGKPLSPN 124 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++SL G+KR++S +V +K+ K +LVG + L + ML + P + L Sbjct: 125 FSKLSLFAGLKRMFSAQTVVELIKALAKAMLVGGVAVWILWRYHDDMLGLMHVAPSAALT 184 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A V I+ + + +LD+ W KL+MSK++++ E K+S G+P K R Sbjct: 185 KALSLVAMCCAFIVASLLVIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDPHTKARI 244 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R R +MM +A +++TNPTHYA+AL+Y + +N AP ++AKG LIA K+R++ Sbjct: 245 RQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYEEDKNGAPRVLAKGTGLIAAKIREL 304 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A EH IP E P LAR+L + V + IP Y AVA+++ ++ Sbjct: 305 AAEHRIPTLEAPPLARALHQHVELGQEIPAELYTAVAEVLAWVFQ 349 >gi|52842013|ref|YP_095812.1| flagellar biosynthesis protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629124|gb|AAU27865.1| flagellar biosynthetic protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 383 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 191/358 (53%), Gaps = 15/358 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ F++ + +L F G + Sbjct: 2 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 53 Query: 61 DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L + +AS Q+ + I+ L L+ S V+P LL+ + + + L+ Sbjct: 54 QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 113 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 V + ++P F R+++ +G+KR+ S+ V +K+F+K +LV + + L + Sbjct: 114 GGWVFSGQSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 173 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ A + + K ++I + + +D+ + ++ +KM+KQE+KDE Sbjct: 174 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 233 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G P +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++A Sbjct: 234 KETEGKPEVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 293 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG+NL+A ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ Sbjct: 294 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 351 >gi|148359330|ref|YP_001250537.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby] gi|296107377|ref|YP_003619077.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99 Alcoy] gi|148281103|gb|ABQ55191.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby] gi|295649278|gb|ADG25125.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99 Alcoy] Length = 382 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 191/358 (53%), Gaps = 15/358 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ F++ + +L F G + Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52 Query: 61 DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L + +AS Q+ + I+ L L+ S V+P LL+ + + + L+ Sbjct: 53 QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 V + ++P F R+++ +G+KR+ S+ V +K+F+K +LV + + L + Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 172 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ A + + K ++I + + +D+ + ++ +KM+KQE+KDE Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G P +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++A Sbjct: 233 KETEGKPEVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG+NL+A ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350 >gi|311068160|ref|YP_003973083.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942] gi|310868677|gb|ADP32152.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942] Length = 360 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 116/351 (33%), Positives = 196/351 (55%), Gaps = 13/351 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65 KTE + KK +D +G +++ A + +++ + L+ L F + G Y + S L Sbjct: 13 EKTEKATPKKRQDTRKKGQ--VAKSADVNTAV-SLLVVFLSFIAIGPYMRDRLLSFLETF 69 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + KL +S++ L L ++ P +L+ ++ G+ S +Q + + +KP Sbjct: 70 YTESLTMKLS-MSNVHTLFIDLLKDTGIILAPIMLVALIAGVISNYMQVGILFSAEVIKP 128 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 K++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L Sbjct: 129 DLKKLSPLKGFKRIYSMRAIVELLKSILKIAVVGFAAFLVLWTHYGEILRLPLLTPEEVL 188 Query: 186 YHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPII 242 F + L M L L VL + + Y ++ Y K ++MSKQ+IKDE K+S G+PII Sbjct: 189 S---FVSKLTLWMGLSGAGALMVLAGLDYLYQKFDYEKNIRMSKQDIKDEYKKSEGDPII 245 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP ++AKG + +A K Sbjct: 246 KSKIKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEHKMDAPYIIAKGVDHLALK 305 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 306 IKQIAKEHDVMTVENRPLARALYDQVEIDQAVPEEFFKVIAEILAYVYKTK 356 >gi|329897646|ref|ZP_08272170.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC3088] gi|328921095|gb|EGG28504.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC3088] Length = 383 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 190/366 (51%), Gaps = 31/366 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE P++K+I+ + ++G S+E S+ ++++ ++ F I ++ Sbjct: 1 MAENDSTQEKTEEPTNKRIQKSRDDGQVARSQELSIAATVITVAGFMYLFGGAMIIKISE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D H VF ++ L+ + ++ LL+ G ++++ + L Sbjct: 61 QFAAAF-------VFDPKH-VFDVSGLTSRVGKGLMDALLVVAPLGAAAFVVSFLVSGVL 112 Query: 121 NHVKPSFKRVSLR-------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 S+K ++ + G+KR++ + + +F K+ K +LVG + T L +NY Sbjct: 113 GGYNFSWKAIAPKASKLNPLSGLKRMFGMKVVFDFFKTIGKFLLVGGL-TYLLVDNYVGQ 171 Query: 174 LDFIS--------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 L F S A SI+ +F LI+I + +D + ++ KLKM+ Sbjct: 172 LMFTSLMNFEGGLALGGSIIVFSFLVATLALIIIAM-------IDAPYQLQEYNKKLKMT 224 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K + G P +K R + R +M+EA + A ++ITNP H+A+AL Y T Sbjct: 225 KQEVKEEAKDTDGRPEVKQRIRQKQRELASMRMLEAIADADVVITNPEHFAVALAYDPTG 284 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + P LVAKG + IA+K+R+ A E +P+F P LARSLF +N IP Y+AVAQ+ Sbjct: 285 DLPPKLVAKGSDFIAEKIRERAKEEGVPLFTSPILARSLFFTTDLNGYIPEPLYEAVAQV 344 Query: 346 IYKIYH 351 I I++ Sbjct: 345 IAFIFN 350 >gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium cellulovorans 743B] gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] Length = 607 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/346 (29%), Positives = 194/346 (56%), Gaps = 2/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D K+E +SKK+ DA +G S++ L + LA L + I +++ + + Sbjct: 262 DEKSEEATSKKLADAKKKGQIARSKDLGLGITFLATAFGLAALGNMFIDRMSNIIMKFFS 321 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ED ++ +L + + L++P + M+ G+ + L Q + +KP Sbjct: 322 VTNGNLTED--GLIEILKIAMIDGAILILPIAFIVMVTGVAASLAQTGFMNTSEPLKPDL 379 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+++ +G KRI+S+ ++V+ +K+ II+VG + ++++ ++ I+ +ILY Sbjct: 380 KKINPVDGFKRIFSMRSVVDLLKNVTIIIIVGYVGYKLVSDDIVDIMLLINLKEGAILYE 439 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V +L+ I L ++ + + D + ++ +++M+KQE+K+E KQ G+P IK ++K Sbjct: 440 LKKIVTSILLKIALILSVIGIADYMYQKKKFLKEMRMTKQEVKEEYKQMEGDPEIKAKRK 499 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R +MM A AT+++TNPTH+A+AL+Y + AP++VAKG + IA K+++IA Sbjct: 500 QKMKELSRARMMAAVPNATVVVTNPTHFAVALKYEEGSAGAPMVVAKGTDNIAFKIKEIA 559 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E+ +PI E LAR ++K+V I+ IP Y+AVA+++ + K Sbjct: 560 KENKVPIIENKPLARLIYKEVDIDEEIPIDMYQAVAEILAMVLKMK 605 >gi|83647843|ref|YP_436278.1| flagellar biosynthesis protein FlhB [Hahella chejuensis KCTC 2396] gi|83635886|gb|ABC31853.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis KCTC 2396] Length = 378 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/359 (29%), Positives = 189/359 (52%), Gaps = 17/359 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END KTE P+ +KIE A EG P SRE + + +LA + LL F + ++ Sbjct: 1 MAENDTSQEKTEEPTPRKIEKAREEGQIPRSRELNTTAVLLAGAVGLLVFGT----TIGK 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP---- 116 L + ++ E++ + HL ++A + I L+ FM+ + + L+ I Sbjct: 57 ALEGVFRASFTLTREEVFDAHQPMIHLGMAALDMAI-SLVPFMLVLLVASLLGPIALGGW 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 +++ P F R++ EG+KR++S+ +L+ K K ++VG + I L + +L Sbjct: 116 MMSAKAAAPKFSRINPLEGLKRMFSLKSLMELFKGVAKTLVVGGVALIILNYSIPDLLAM 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDE 232 S + + HA +L LF+A+ + ++D+ + + L+M+ QEIKDE Sbjct: 176 GSEDTMVSMAHAC----SLLAWSFLFLASSMILIALVDVPFQIYDNQKNLRMTMQEIKDE 231 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + G P +K R + + R +M++ +A ++ITNPTHY++AL+Y + AP+++ Sbjct: 232 YKDTEGKPEVKRRVREVQYEMSRRRMLQDVPKADVVITNPTHYSVALKYDAKKMAAPIVL 291 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 AKG + +A K+R+IA H I + P L RS++ + IP Y AVAQ++ ++ Sbjct: 292 AKGADHMAMKIREIANAHKIELVSAPPLTRSIYHHTEVGEEIPSGLYLAVAQVLAYVFQ 350 >gi|317492437|ref|ZP_07950866.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919776|gb|EFV41106.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 383 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 12/358 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE P+S K+E A +G P SRE + + A + LL G + Sbjct: 1 MSE-DSDLEKTEDPTSHKLEKAREKGQVPRSRELTSMLMLAAGISILLI----GGEHLAR 55 Query: 61 DLHVLLASATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L +++ Q + + ++ L +L A ++P LL M+ G + ++ Sbjct: 56 QLAAMISQGLQFDQLLISNDKQMLRQLGNLLQQAVAALMPVLLGLMLVGWAAPMLIGGFF 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 N +K ++SL G+KR++S L +K +K+ILV + L + ML I Sbjct: 116 FNPGSIKFDLSKMSLLSGLKRLFSSQALAELLKGVLKVILVSWVAGWFLWHYWGQMLALI 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQ 235 + +P + A + ++I+L + + D+ Y W +KLKM+KQEIKDE K+ Sbjct: 176 AESPLDAMGDALHLIGMCGLLIVLGLVPMVAFDV--FYQIWSNLNKLKMTKQEIKDEFKE 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG Sbjct: 234 QEGDPHVKGRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA +++++ +H IP E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 294 AGEIALRIKELGNQHRIPQLEAPPLARALYRHSEIGHHIPATLYAAVAEVLAWVYQLK 351 >gi|258514018|ref|YP_003190240.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans DSM 771] gi|257777723|gb|ACV61617.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans DSM 771] Length = 354 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 108/359 (30%), Positives = 204/359 (56%), Gaps = 21/359 (5%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF--SPGIYSVTSDL 62 KTE + +K+ A +G +++ + L +++L + LLF+ + S+ Sbjct: 3 QGGQEKTEKATPRKLLQARRKGQ--VAKSSDLNAAVLMLAVVLLFYSIKQQQLSSMYKYF 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 LA+ TQ + +S ++ L+ S+ +L+ P L++ ++ + +Q V + Sbjct: 61 SWYLANFTQYRESQVS-LMQLMVSFSIYYIKLMAPVLIVVVIVALLINFMQVGLVFSSES 119 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP KR + EG KRI+++ +LV K+ K++++G I ++ + +L A P Sbjct: 120 IKPQLKRANPIEGFKRIFTVRSLVELAKNIFKLLVIGGITYNLISGRFNELLLIFYATPA 179 Query: 183 SILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 I F TV ++ IL + + +LD + +++ ++MSKQ+IKDE KQ+ G Sbjct: 180 MI----FQTVSGFILRILGWGGIVYFAMALLDYLYQRYEFQKSMRMSKQDIKDEYKQTEG 235 Query: 239 NPIIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 +P++K++ Q+ ++ SRIR +M RAT+++TNPTH+A+ALRY + + D P++ AK Sbjct: 236 DPLLKSKLREMQRKMSLSRIREEM----PRATVVVTNPTHFAVALRYSEGDADVPLVTAK 291 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A +MR++A E+N+P+ E+ LAR L+ +V + + IP Y++VA+++ +Y KK Sbjct: 292 GADYLALRMREMAKEYNVPVIEQRELARLLYDRVEVGTEIPYELYQSVAEILAMVYKKK 350 >gi|54297699|ref|YP_124068.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str. Paris] gi|53751484|emb|CAH12902.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str. Paris] Length = 382 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 190/358 (53%), Gaps = 15/358 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ F++ + +L F G + Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52 Query: 61 DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L + +AS Q+ + I+ L L+ S V+P LL+ + + + L+ Sbjct: 53 QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 V + ++P F R+++ +G KR+ S+ V +K+F+K +LV + + L + Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 172 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ A + + K ++I + + +D+ + ++ +KM+KQE+KDE Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G P +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++A Sbjct: 233 KETEGKPEVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG+NL+A ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350 >gi|169827139|ref|YP_001697297.1| flagellar biosynthesis protein FlhB [Lysinibacillus sphaericus C3-41] gi|168991627|gb|ACA39167.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41] Length = 362 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 111/354 (31%), Positives = 193/354 (54%), Gaps = 18/354 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +DA +G S++ + S+I+ ++++ FF G S+ +L Sbjct: 15 EKTEKATPKKRQDARKKGQVVKSQDVT--SAIVMLMVFIFLFFFAG--SLRDELLAFFRQ 70 Query: 69 ATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + I ++ L + + +++P + + ++ + +Q + L +K Sbjct: 71 TFIHNIRIETLTIDSVMHLFIDTLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMK 130 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 K++ +G+KRI+S+ +V +KS +KI +G++ TI + N +L +P Sbjct: 131 FDLKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSP--- 187 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQW-YSK-LKMSKQEIKDEIKQSYGN 239 + TV K L+ I+ A+L +L + W Y ++ Y K LKMSKQ+IKDE K S G+ Sbjct: 188 -WITLITVGK-LVGIMGIAASLVLLCVSILDWLYQKFDYEKNLKMSKQDIKDEYKNSEGD 245 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK++ K R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + I Sbjct: 246 PLIKSKIKQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEESMDAPRVIAKGTDFI 305 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K++ IA EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K Sbjct: 306 AQKIKLIAKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 359 >gi|54294673|ref|YP_127088.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str. Lens] gi|53754505|emb|CAH15989.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str. Lens] Length = 382 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 190/358 (53%), Gaps = 15/358 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ F++ + +L F G + Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52 Query: 61 DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L + +AS Q+ + I+ L L+ S V+P LL+ + + + L+ Sbjct: 53 QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 V + ++P F R+++ +G KR+ S+ V +K+F+K +LV + + L + Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 172 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ A + + K ++I + + +D+ + ++ +KM+KQE+KDE Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G P +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++A Sbjct: 233 KETEGKPEVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG+NL+A ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350 >gi|329904716|ref|ZP_08273917.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] gi|327547860|gb|EGF32618.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] Length = 379 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 109/361 (30%), Positives = 182/361 (50%), Gaps = 33/361 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY----SVTSDLHV 64 KTE S ++I+ A G+ P SRE + CL+ L G+Y ++ L Sbjct: 8 EKTEPASQQRIDKARENGDVPRSRE------LATCLV--LLAAGGGLYISGANMLRQLKA 59 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIP-----GLLLFMMFG----IGSYLIQRI 115 LAS LL+ L L++ G+L+ + IG +L Sbjct: 60 ALASGLTFDRGQAFDFSLLLSRLGSHLGDLLLAFAPLAGILILVALASPLLIGGWL---- 115 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + P+F R++L G+ +I S+N LV K+ K ++VG+I + + +L Sbjct: 116 --FSAQALAPNFGRMNLFSGLLKIVSLNALVELGKAVAKAVIVGSIAYLVMRSEIDEVLG 173 Query: 176 FISANPHSILYHA---FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + + H F+ +++M L+ IA + WSY + K+ M++QE++ E Sbjct: 174 LMVEPAEAGSMHMAKLLFSTYMLIVMGLVLIAAVDAPYQMWSYAK---KMMMTRQEVRQE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K+S GNP IK + ++ R R +MM A +++TNPTHYA+AL+Y + AP +V Sbjct: 231 AKESEGNPEIKAKIRAQQREMARRRMMSEVPTADVVVTNPTHYAVALKYTDGKMGAPQVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A ++R++A +N+P+ E P LAR+LFK V + AIP Y AVA+++ ++ Sbjct: 291 AKGADAVAARIRELAAANNVPLLEAPPLARALFKHVELGDAIPETLYTAVAEVLAYVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|157371217|ref|YP_001479206.1| flagellar biosynthesis protein FlhB [Serratia proteamaculans 568] gi|157322981|gb|ABV42078.1| flagellar biosynthetic protein FlhB [Serratia proteamaculans 568] Length = 398 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 183/351 (52%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+EAP+ ++E A +G P SRE +S+L + L + G +++ L Sbjct: 18 EDSDLEKSEAPTPHRVEKAREDGQIPRSRE---LTSVLMLVAGLSIIWVAG-SNMSQQLA 73 Query: 64 VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++L +S+ +L L + A ++P + + I + ++ +L+ Sbjct: 74 MMLTQGLNFDHSMVSNDKQMLRQLGMLLRQAVWALLPVMAGLTLVAITAPMLLGGLLLSG 133 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR++ G+KRI+S L +K +K LVG + + L N+ ML ++ Sbjct: 134 KSLKFDLKRMNPLTGLKRIFSSQVLAELLKGILKATLVGWVTGLYLWHNWAAMLHLVTQQ 193 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L +A + ++++L + + D+ + + KLKM+KQ+I+DE K G+P Sbjct: 194 PLDALANALQMIIFCGLLVVLALTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDP 253 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA Sbjct: 254 HVKGRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDKKMSAPKVLAKGAGEIA 313 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++ +H IP+ E P LAR+L++ I IP Y AVA+++ +Y Sbjct: 314 LRIRELGMQHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQ 364 >gi|320354335|ref|YP_004195674.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM 2032] gi|320122837|gb|ADW18383.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM 2032] Length = 355 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 197/355 (55%), Gaps = 5/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E A +TE+PS+K+ D +G SRE + L++ +FF +P + T Sbjct: 1 MAEEPASGERTESPSAKRRADFRKKGQVAQSREVQTAALFTLLLLFWVFF-APIFWDGTK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ +L + S ++ L L +S + ++ P L+ ++ G + +Q + Sbjct: 60 EMVAVLWRNSGDYAITTSSLMQLGYFLGVSLAMILAPLFLVALLVGFLATFLQIGWLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYFTMLDFIS 178 + P ++ +G+ R +S +LV +KS +K+ L+G I T++ + +L + Sbjct: 120 EPLIPDLTKLDPIKGMGRFFSKRSLVEVIKSLLKVGLIGWIAYKTVAGEMDQALLLTEMP 179 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + +ILY A T V+ + + L +LD + + K+KM+KQE K+E+K++ G Sbjct: 180 LD-DTILYLAK-TSALVMAKVAAIMIVLAILDYAFVRWEMEEKMKMTKQEQKEEMKETEG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ +SI + R +MM A A ++ITNPTH A+A++Y DAP+++AKGQ L Sbjct: 238 DPHIKSKIRSIQQQMARRRMMAAVPTADVVITNPTHIAVAIKYEAGTMDAPLVLAKGQEL 297 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+R+IA E++IP+ E P +AR L +V + AIP +KAVA+++ +Y K Sbjct: 298 VAEKIREIARENDIPLVENPPVARLLHSKVEVGQAIPEELFKAVAEILAYVYSLK 352 >gi|73539437|ref|YP_299804.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha JMP134] gi|72122774|gb|AAZ64960.1| Flagellar biosynthetic protein FlhB [Ralstonia eutropha JMP134] Length = 380 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 190/358 (53%), Gaps = 16/358 (4%) Query: 4 NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62 +D D KTE S +++E A EG SRE + F ++ +I G++++ + Sbjct: 2 SDESDLEKTEPASPRRLEKAREEGQVVRSRELATFIMLMTGVI--------GLWTLGGTI 53 Query: 63 HVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 L + ++ L D S ++ ++ + +P LLLF + + + L+ Sbjct: 54 GRSLDTVMRQSLRFEPATAFDTSRMLSRFANVIWESLLAFMPLLLLFGVAAVAAPLLMGG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + P+F R+S G+ R++S++++ +K+ K +LVG++ + + Sbjct: 114 WTFSTKALMPNFGRMSPMSGLGRMFSVHSVAELVKAIAKSLLVGSVGAWVVWHRLPDAIA 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 ++A L H V + + ++L + + +D+ W + + + KL+MSK+E+K E K+ Sbjct: 174 LMNAPVQEALLHMLDMVLRCCVPVVLSLLLVAAIDVPWQFWEHFKKLRMSKEEVKQEFKE 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P IK R + R+ R +MM+ +A +++TNPTH+A+ALRY + AP ++AKG Sbjct: 234 SEGDPHIKGRIRQQQRAMARRRMMQEVPKADVVVTNPTHFAVALRYEEGRMSAPRVIAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A ++R++A EH IP+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 294 TDEVAARIRELAAEHRIPLMSAPPLARALHRHVDLGQEIPAGLYTAVAEVLAWVYQLK 351 >gi|157692318|ref|YP_001486780.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] gi|157681076|gb|ABV62220.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] Length = 362 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 106/279 (37%), Positives = 163/279 (58%), Gaps = 6/279 (2%) Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137 S+I L L L++P L + M+ GI S +Q + + +KP +++ +G K Sbjct: 83 SNIHQLFVELLQETGLLLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKLEKLDPIKGFK 142 Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 RIYSI LV +KS +KI L+G I+L ++ +L L+ F LI Sbjct: 143 RIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLH---FVASMTLI 199 Query: 198 MILLFIATLTVL-DIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 M L L VL + + Y ++ Y K L+MSKQ+IKDE K+S G+P+IK++ K R Sbjct: 200 MGLYAAGALMVLAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIKQRQREMA 259 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA EH+I Sbjct: 260 MRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIAKEHDIMT 319 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E LAR+L+ QV I+ A+P ++KA+A+++ +Y K Sbjct: 320 VENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358 >gi|78776868|ref|YP_393183.1| flagellar biosynthesis protein FlhB [Sulfurimonas denitrificans DSM 1251] gi|78497408|gb|ABB43948.1| Flagellar biosynthetic protein FlhB [Sulfurimonas denitrificans DSM 1251] Length = 350 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 197/365 (53%), Gaps = 40/365 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVT 59 +DA KTE P+SKKIEDA EGN P S++AS LF +ILA L+ + S I S+ Sbjct: 3 DDA--EKTEEPTSKKIEDARKEGNVPKSQDASGVMTLFVAILAFLMLFPYMLS-HILSIF 59 Query: 60 SDLHVLLASATQRKLE-DISHI----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 L+ R L DI+ + +FL+ + LS + + + FG Sbjct: 60 KYYFSLIGMTIDRALMLDIAIVTIKEIFLII-MPLSIAVAIAGVIAAISQFGF------- 111 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + P K++ +G+K ++S+ L++ +K I + T+ + +F + Sbjct: 112 --LFTTKSITPDLKKLDPIKGMKNLFSMKKLIDGIK-----ITFKSFTTLGIGFVFFFL- 163 Query: 175 DFISANPHSILYHAFFTVRKVLI---------MILLFIATLTVLDIGWSYHQWYSKLKMS 225 FI P L+ FT + + + ++LL I V+DI Q++ LKMS Sbjct: 164 -FIMELPTVALFG--FTDQMIWLRDKAIIIAFVMLLIIFIFAVIDIVIVRKQYFDGLKMS 220 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQEIKDE+K G+P+IK + + I R +MM A A ++ITNPTHYA+A++Y + + Sbjct: 221 KQEIKDEMKNMDGDPLIKGKIRQIQMEASRKRMMSAVPEADVVITNPTHYAVAIKYDEQK 280 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + AP++VAKG + IA++++KIA E+ + I + P LARSL+ +V ++ IP + AVA++ Sbjct: 281 SHAPIVVAKGMDNIAQQIKKIARENGVHIVQNPPLARSLYAEVELDKPIPSELFGAVAEV 340 Query: 346 IYKIY 350 + IY Sbjct: 341 LAYIY 345 >gi|304396256|ref|ZP_07378138.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB] gi|304356625|gb|EFM20990.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB] Length = 382 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/357 (31%), Positives = 191/357 (53%), Gaps = 15/357 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ ++KTE+P++ ++E A EG P SRE +S+L L ++ + G + L Sbjct: 2 SDSDEDKTESPTAHRLEKAREEGQIPRSRE---LTSVLMLLAGIMILWMGG-NMMAHRLA 57 Query: 64 VLLASA---TQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 ++A+ + D +SHI L+T +L A ++ GL+L I + ++ Sbjct: 58 AMVATGLRFDHGMVRDDKIIVSHIGSLITQ-ALMALLPLMGGLVLV---AIAAPMLLGGI 113 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + +K K+++ G KR+++ K +K ILVG + + ++ ML Sbjct: 114 VFSGKSIKFDPKKMNPIAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRL 173 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 IS P + L H + +++L + + D+ W + + KLKMS QEI+DE KQ Sbjct: 174 ISEAPVTALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQ 233 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG Sbjct: 234 EGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGA 293 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++R++A EH IP+ E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 294 GEIALRIRELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 350 >gi|88813214|ref|ZP_01128454.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] gi|88789536|gb|EAR20663.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] Length = 385 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 188/366 (51%), Gaps = 33/366 (9%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 E+ + KTEAP++K+ +A +G P SRE + ++L+ LL F G Y S Sbjct: 3 EEHSNGEEKTEAPTAKRRHEAKEQGQVPRSRELTTLLAMLSAAGGLLIF---GNYMTDS- 58 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----- 116 LA A ++ L +F A ++ ++ ++ +G + + Sbjct: 59 ----LADALRQGLHVGRDAIF-----DPQAPIRLLREMIAQGLWAVGPLALVLLLVALVA 109 Query: 117 -------VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + + P ++ +G+KR++ ++ LV KS K++LVG + T +L ++ Sbjct: 110 PVALGGWTFSAKALAPKLSKLDPVKGLKRLFGVHGLVELGKSLAKVMLVGAVGTYALWQS 169 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMS 225 LD A L+ A ++ L +AT +L D+ + KL+M+ Sbjct: 170 ----LDDFQALAAEALFPALQHAARIFNTTFLMLATALILIALVDVPFQLWDHTRKLRMT 225 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+KDE+KQ+ G P +K+R + + + + +MME +A +++TNPTH+A+ALRY Sbjct: 226 KQELKDELKQTEGKPEVKSRIRQLQQQAAQGRMMEQVPKADVVVTNPTHFAVALRYDPLH 285 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP L+AKG +LIA+++R+IA ++ +P+FE P LAR+L ++ +P Y AVAQ+ Sbjct: 286 MRAPRLMAKGTDLIAQRIRRIAEDNGVPLFEAPPLARALHYTTELDQEVPAGLYLAVAQV 345 Query: 346 IYKIYH 351 + IY Sbjct: 346 LAYIYQ 351 >gi|94312630|ref|YP_585839.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans CH34] gi|93356482|gb|ABF10570.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans CH34] Length = 380 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 179/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD--LHVLL 66 KTE +++++E A EG SRE F+ ++ +I L + + G+ D +H L Sbjct: 8 EKTEPATARRLEKAREEGQVVRSRELGTFAMLMTGVIGL--WATGGVLGRKLDAVMHAGL 65 Query: 67 ASA------TQRKLEDISHIVF------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 A T R L + IV+ L L + LV P L MF S+ Sbjct: 66 AFEPATAFDTNRMLSQFAAIVWDALLAFLPLLLMFGVAALVTPLALGGWMFSTKSF---- 121 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P F R+S G+ R++S ++LV K+ K +LVG + + + Sbjct: 122 ---------SPDFSRMSPISGLGRLFSAHSLVELAKAIAKSLLVGGVGAWMIWRKLPEAI 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + A L H V V ++ + + LD+ W + ++ KL+M+K+EIK E+K Sbjct: 173 ALMDAPIQEALLHMMELVLYVSGVVAGSLILVAALDVPWQLYTFHKKLRMTKEEIKQEMK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P IK R + R+ R +MM +A +++TNPTHYA+ALRY + AP +VAK Sbjct: 233 ETDGDPHIKARIRQQQRAIARRRMMAEVPKADVVVTNPTHYAVALRYEEGRMGAPRVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A ++R++A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 293 GADEVAARIRELAAEHRVPMLSAPPLARALHRHVELGHEIPAGLYTAVAEVLAWVYQLK 351 >gi|302389679|ref|YP_003825500.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani DSM 16646] gi|302200307|gb|ADL07877.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani DSM 16646] Length = 357 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 193/364 (53%), Gaps = 36/364 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHV 64 KTE + ++ + A G SRE + +LA + L F GIY + S L Sbjct: 8 QEKTEKATPRRRQKARERGQVFSSRELNSALILLASFVLLKIF---GIYIFENTGSFLRQ 64 Query: 65 LLASATQRK---LEDI-----SHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRI 115 R+ + DI S IVF+L + A +V+ GLL+ F+ G Sbjct: 65 FFIENLIRQDLSISDIYGIFYSSIVFVLKSTAPVAVGIVLVGLLVNFLQVGF-------- 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT---ISLTENYFT 172 V +L + P R++ EG KRI+S +L+ +K+ VKIIL+ I + + + Sbjct: 117 -VFSLEPISPKLDRINPVEGAKRIFSKRSLIELVKALVKIILIIYIFYGGFVEIKDTVAL 175 Query: 173 MLDFISANPHSILYHAFFTVR---KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 MLD + S+ Y R KV I +L+ L+VLD G+ ++++ L MSK+++ Sbjct: 176 MLDM--SFTESLGYFTSMMFRLGLKVGIALLV----LSVLDYGYQWYEYEKSLMMSKEDV 229 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E+K+ GNP IK+R + + R R +MM+ +A ++ITNPTH A+AL Y + + AP Sbjct: 230 KEELKEVEGNPQIKSRIRQVQRQMSRRRMMQEVKKADVVITNPTHIAIALGYDASVHAAP 289 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V++AKG IA+K+++IA +IPI E LA++LFK V + IP FY AVA+++ + Sbjct: 290 VVLAKGTGAIAEKIKEIAEREDIPIVENKPLAQTLFKSVEVGDIIPEEFYNAVAEILAFV 349 Query: 350 YHKK 353 Y K Sbjct: 350 YSLK 353 >gi|114320141|ref|YP_741824.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii MLHE-1] gi|114226535|gb|ABI56334.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii MLHE-1] Length = 390 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 113/366 (30%), Positives = 186/366 (50%), Gaps = 33/366 (9%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 E++ KTE P+ K+++DA +G P SRE + +L + +L F G Y + Sbjct: 3 EESENGQEKTEQPTPKRLQDAKKKGQIPRSRELTTTLLMLFAALGMLMF---GGY-MGEG 58 Query: 62 LHVLLASATQRKLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMF-------GIGSYLI 112 + LL + Q E I H +L L++ + MM +G + Sbjct: 59 IVGLLEWSFQPGREQIFDPKEPIARVHEALGRGLLIVAPFVGLMMLVALIGPVALGGWTF 118 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI--SLTENY 170 P++ P ++++ +GIKRI+ L+ K KI++VG + + L ++ Sbjct: 119 SAQPMI------PKPEKMNPVKGIKRIFGPKALIELAKGIAKILVVGAVAGVFFYLFQDE 172 Query: 171 FTMLDFI---SANPHSI--LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 L SA H+I + AFF + LI+++ +D+ + KL+M+ Sbjct: 173 LRSLALAPLQSAMAHAIELFFIAFFVLAASLIIVV-------AVDVPYQLWDHQKKLRMT 225 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 +QE+KDE KQ+ G P +K + + + R + +MME A +++TNPTHYA+AL+Y Q Sbjct: 226 RQEVKDEFKQTEGKPEVKGKIRQLQREAAQRRMMEKVPEADVVVTNPTHYAVALQYDQLR 285 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VA G++ +A ++R+IA EH IP+FE P LAR+L+ I+ IP Y AVAQ+ Sbjct: 286 MRAPRVVALGKDQVALRIREIAGEHGIPLFEAPPLARALYHTTDIDQEIPAGLYMAVAQV 345 Query: 346 IYKIYH 351 + IY Sbjct: 346 LAYIYQ 351 >gi|304311113|ref|YP_003810711.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1] gi|301796846|emb|CBL45058.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1] Length = 375 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/362 (30%), Positives = 186/362 (51%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D KTE + +K+E A +G P SR+ S ++ I +L + IY Sbjct: 1 MADEDG-QEKTEDATPRKLEQAYEKGQTPRSRDLVAVSMLIIGGIGMLLYVEQ-IYRAFV 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI---------GSYL 111 + + + K+ D S ++ L + +A + ++P LF + G Sbjct: 59 TAFEMGFTFDREKIFDDSAMMRALLQAAYAAGKSLLP---LFATLAVVAIAASVASGGLH 115 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + P++ F++++ GIKR++S+ +LV +KS +K+ LVG + + + Sbjct: 116 VSSHPLMF------KFEKLNPLSGIKRMFSLQSLVELIKSIMKVSLVGFTAWLVVKAQFA 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 L I + H+ V + + L +A + +D+ + Q+ +L+M+KQE+KD Sbjct: 170 EYLGLIDEPIQQAMLHSISMVAWAFVWLSLSLALVAAIDVPYQNWQFRKQLRMTKQEVKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K S G P IK +Q+ AR MM +A ++ITNPTH+A+ALRY T+ AP L Sbjct: 230 EYKDSEGKPEIKAKQRQRAREMAFAGMMAEVPKADVVITNPTHFAVALRYDPTKGGAPKL 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG +LIA++++++A +N+ I P LARS+F + IP Y AVAQ++ +YH Sbjct: 290 VAKGADLIAEQIKRVAIANNVVILAAPPLARSIFYHTKLFKEIPSGLYVAVAQVLAYVYH 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|213022149|ref|ZP_03336596.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 336 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/335 (29%), Positives = 184/335 (54%), Gaps = 7/335 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++R+I EH +P E P LAR+L++ I IP Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIP 333 >gi|307610486|emb|CBX00058.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 130b] Length = 425 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 190/358 (53%), Gaps = 15/358 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ F++ + +L F G + Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52 Query: 61 DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L + +AS Q+ + I+ L L+ S V+P LL+ + + + L+ Sbjct: 53 QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 V + ++P F R+++ +G KR+ S+ + +K+F+K +LV + + L + Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGFKRMISLKGFIEMLKAFLKFVLVASASILVLRSQVPLL 172 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ A + + K ++I + + +D+ + ++ +KM+KQE+KDE Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G P +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++A Sbjct: 233 KETEGKPEVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG+NL+A ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350 >gi|126653730|ref|ZP_01725648.1| flagellar biosynthesis protein B [Bacillus sp. B14905] gi|126589694|gb|EAZ83830.1| flagellar biosynthesis protein B [Bacillus sp. B14905] Length = 365 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/350 (31%), Positives = 189/350 (54%), Gaps = 10/350 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +DA +G S++ + +L I+L+FF + + Sbjct: 18 EKTEKATPKKRQDARKKGQVIKSQDVTSAIVMLMVFIFLIFFAGSLRDELLAFFRQTFIH 77 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I ++ L + + +++P + + ++ + +Q + L +K K Sbjct: 78 NIRIETLTIDSVMHLFIETLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFDLK 137 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ +G+KRI+S+ +V +KS +KI +G++ TI + N +L +P + Sbjct: 138 KMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSP----WMT 193 Query: 189 FFTVRKVLIMILLFIATLTVLDIG---WSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIK 243 TV K L+ I+ A+L +L + W Y ++ Y K LKMSKQ+IKDE K S G+P+IK Sbjct: 194 LITVGK-LVGIMGIAASLVLLCVSILDWMYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIK 252 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ K R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA+K+ Sbjct: 253 SKIKQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEENMDAPRVIAKGTDFIAQKI 312 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K Sbjct: 313 KLIAKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 362 >gi|222530120|ref|YP_002574002.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii DSM 6725] gi|222456967|gb|ACM61229.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii DSM 6725] Length = 366 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 192/350 (54%), Gaps = 13/350 (3%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S I + S Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFF-SN 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 LEDIS LL+ + ++ ++V+P + M + Q ++ +K SF++ Sbjct: 75 LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAVIVEWAQSSFLITGQSLKMSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT------MLDFISANPHS 183 ++ EG KRI+SIN++V +KS +K++++G T ++T +L+ N + Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIG------YTGYFYTQTFAKKLLEMYEMNVFT 188 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I+ +F + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK Sbjct: 189 IVRFSFGSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIK 248 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ + R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+ Sbjct: 249 SKIREKQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKI 308 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ A +H I I E LAR+L+ + IPP Y+AVA+++ +Y K Sbjct: 309 KQEAIKHRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358 >gi|57506049|ref|ZP_00371972.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis RM3195] gi|57015657|gb|EAL52448.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis RM3195] Length = 356 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 110/363 (30%), Positives = 190/363 (52%), Gaps = 42/363 (11%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-------------LFFFSPGI 55 KTE P+SKKIEDA EGN P S++A+ +++ + L L+ + Sbjct: 7 EKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVANLYRYYQNF 66 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 V DL ++ A ++ I ++ +L + LS M+ GI ++Q Sbjct: 67 IGVEFDLRIIQAIM----MKSIFEVLIILAPIVLS-----------IMVAGIIGNVMQFG 111 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + P+ +++ +G+K ++S+ L+ +K +K+ +V TI + +L Sbjct: 112 FIFTTKPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVSVVFTI-------AFIVLLQ 164 Query: 176 FISANPHSILY----HAFFTVRKVLIMILLFIATLTV---LDIGWSYHQWYSKLKMSKQE 228 F+ P LY + K LI+ + I + LD+ Q++ LKMSKQE Sbjct: 165 FVKELPKVELYSLAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQE 224 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 IKDE KQ G+P +K R + + R +M++ + A ++ITNPTHYA+ALRY T+ +A Sbjct: 225 IKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENA 284 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P +VAKG + +A +++++AY+HN+ ++E P LAR L+K ++ IP +KAV+++ Sbjct: 285 PRVVAKGVDFLALRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKF 344 Query: 349 IYH 351 +Y Sbjct: 345 VYQ 347 >gi|194014696|ref|ZP_03053313.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061] gi|194013722|gb|EDW23287.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061] Length = 362 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/279 (37%), Positives = 163/279 (58%), Gaps = 6/279 (2%) Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137 S+I L L L++P L + M+ GI S +Q + + +KP +++ +G K Sbjct: 83 SNIHQLFVQLLQETGILLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKLEKLDPIKGFK 142 Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 RIYSI LV +KS +KI L+G I+L ++ +L L+ F LI Sbjct: 143 RIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLH---FVANMTLI 199 Query: 198 MILLFIATLTVL-DIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 M L L +L + + Y ++ Y K L+MSKQ+IKDE K+S G+P+IK++ K R Sbjct: 200 MGLYAAGALMILAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIKQRQREMA 259 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA EH+I Sbjct: 260 MRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIAKEHDIMT 319 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E LAR+L+ QV I+ A+P ++KA+A+++ +Y K Sbjct: 320 VENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358 >gi|114570480|ref|YP_757160.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10] gi|114340942|gb|ABI66222.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10] Length = 363 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 182/346 (52%), Gaps = 1/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ ++++DA +G+ S+E + + A L L F F ++ Sbjct: 1 MAEGEDDSQKTEEPTQRRLDDARKKGDVAKSQEIPGWFVLAAGLALLSFIFPMMSRALAG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L V + + ++ L+ ++ +V + L + G + +Q+ + Sbjct: 61 NLEVFFEQPHDFAI-NPGAMMGLMQAVAWQVVAIVGLPIGLLAVAGFAGHYVQQGMLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ EG KR + L NF+K K+ LV + + + + + Sbjct: 120 EKIQPKLSKLNPIEGFKRNFGPQGLANFLKGVGKMALVAVAAFLVIYPKREILAGLPALD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S+L ++L+ L A + LD + + + +MS++EIKDE+KQS G+P Sbjct: 180 IGSLLSLVRQGAIELLLAALTVYAVIAGLDYIFQRQSFMKRNRMSRREIKDEMKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ + + + + R + +MM AT+++TNPTHYA+AL Y+Q E APV VAKG + +A Sbjct: 240 LVRAKLRQLRQERSQRRMMTKVPDATVVVTNPTHYAIALHYVQGETPAPVCVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R++A EH++PI E+P LAR+L ++ IP ++AVA+++ Sbjct: 300 LRIRELAEEHSVPIVEDPPLARALHATADLDEEIPTEHFQAVAKVV 345 >gi|270262410|ref|ZP_06190681.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13] gi|270043094|gb|EFA16187.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13] Length = 398 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 182/351 (51%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+EAP++ ++E A +G P SRE +S+L + L + G + L Sbjct: 18 EDSDLEKSEAPTAHRVEKAREDGQIPRSRE---LTSVLMLVAGLSIIWVAG-GGMAQQLA 73 Query: 64 VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L +S+ +L L + A ++P + ++ I + ++ +L+ Sbjct: 74 AMLTQGLNFDHTMVSNDKQMLRQLGMLLRQAVWALLPIMAGLVLVAITAPMLLGGLLLSG 133 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR++ G+KR++S L +K +K LVG I + L ++ ML ++ Sbjct: 134 KSLKFDVKRMNPLSGLKRMFSSQVLAELLKGLLKATLVGWITGLYLWHHWAEMLHLVTQQ 193 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L +A + ++++L + + D+ + + KLKM+KQ+I+DE K G+P Sbjct: 194 PLDALGNALRMIIFCGLLVVLGLTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDP 253 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA Sbjct: 254 HVKGRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDQKMSAPKVLAKGAGEIA 313 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y Sbjct: 314 LRIRELGTEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQ 364 >gi|218288313|ref|ZP_03492612.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius LAA1] gi|258511391|ref|YP_003184825.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241672|gb|EED08845.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius LAA1] gi|257478117|gb|ACV58436.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 361 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 188/352 (53%), Gaps = 9/352 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-FFSPGIYSVTSDLHV 64 A +TE + ++ ++A EG ++R L S++ + + P ++ +L Sbjct: 10 AAGERTERATPRRRQEARKEGR--VARSPELTSAVAFAAVLVALRILGPAVWGEWENLIQ 67 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + K + + L+ ++A+R+++P + + G+ + ++Q P+ + Sbjct: 68 RDLGGSALKSWTVEGVRALMATQVMAAARIMLPIAAVAAVIGLAAAVMQVRPLFVPQLLL 127 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS- 183 P F+R+S G +RI S+ + +KS +K+ V + SL M++ +A + Sbjct: 128 PDFQRISPATGWRRIASLQGALEALKSLLKLAAVVGVAYTSLASLAHQMINLSAAELDAV 187 Query: 184 --ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 IL A F + I + + + +D + + L+MSKQE+KDE+K++ GNP+ Sbjct: 188 PGILGRAVFNL---AIRVACAMVVIAAIDYVYQRYSLERSLRMSKQELKDELKETEGNPL 244 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K+ + AR +MM+ ++A ++ITNPTHYA+AL Y +AP +VAKG + +A+ Sbjct: 245 VKSAVRRRARQIASRRMMQNVAKADVVITNPTHYAVALAYQSDTMNAPQVVAKGADFVAQ 304 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ A EH++P+ E P LA++L++ V I IPP Y+AVA+++ +Y + Sbjct: 305 EIRRRAEEHDVPLVENPPLAQALYRTVDIGQEIPPDLYQAVAEVLAYVYRMR 356 >gi|78044903|ref|YP_359855.1| flagellar biosynthetic protein FlhB [Carboxydothermus hydrogenoformans Z-2901] gi|77997018|gb|ABB15917.1| flagellar biosynthetic protein FlhB [Carboxydothermus hydrogenoformans Z-2901] Length = 353 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/357 (30%), Positives = 187/357 (52%), Gaps = 16/357 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIY---- 56 ++ D +TEAP+ +++ +A G S+E A +F L+ L +F Y Sbjct: 3 DEQRDQRTEAPTPRRLAEARRRGQVFKSQELNFAVMFLIFFLLLLVLGGYFYQQFYLLSR 62 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 +V ++ + L + R L LL + S ++V+P LLL M+ GI L+Q Sbjct: 63 NVFRNMFIELTPSAVRGL--------LLYYFGWS-FKIVLPFLLLGMLAGIALNLVQVGF 113 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + +KPS++R++ G RI+S N V +K+F+K + +I + + N + Sbjct: 114 IFTTEPLKPSWERINPLSGFSRIFSRRNWVELLKNFLKFGFLALVIYLRIKSNLPLIFQK 173 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 I P F ++K+ + LL + +D + ++Y LKM+KQE+K+E +Q+ Sbjct: 174 IGQAPAEYFNGYFSLIKKIALDTLLVLFLFGAVDYWYQRREYYQSLKMTKQELKEEYRQT 233 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P+IK R + R +++ +AT+++TNP H A+AL+Y + + AP +VAKG Sbjct: 234 EGDPLIKARLRERQRQIALNQIAREVPQATVVVTNPVHIAVALKYERGKMAAPKVVAKGA 293 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+++IA HN+ I E +AR L+K + IP Y AVA++I +Y KK Sbjct: 294 GFLAEKIKEIARAHNVEIVENVEVARFLYKNCEVGEEIPEELYNAVAEIIAWVYRKK 350 >gi|58039957|ref|YP_191921.1| flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H] gi|58002371|gb|AAW61265.1| Flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H] Length = 358 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/349 (30%), Positives = 177/349 (50%), Gaps = 8/349 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D+KTEAPSS++++ A +G +SREA F ++L + + + VL+A Sbjct: 5 DDKTEAPSSQRLQKAREDGQIVMSREAMNFVALLGGFAGIFMVLPYLVMDFVHVMQVLMA 64 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +A + ++ H + +L +P + +G +Q +++ + P F Sbjct: 65 NAGTVPMAQ-GGLLNSTDHAIEAGLKLAVPMAATVAVLCLGGGFLQTGFLIHPESLLPKF 123 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDFISANPHSI 184 +R+S G KRI L + K+ K + + I+ + M+ + Sbjct: 124 ERISPLAGFKRIAGGGTLPDTFKALAKFAIFAVVLWNISKGAIPSAPRMVGLEPGPLLKM 183 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + F +I+ L IA DI W + SKLKMS++++KDE K + G+P +K Sbjct: 184 MTDLGFRAASAMILAQLVIAGF---DIFWMRFRHISKLKMSREDLKDEYKNTEGDPHVKG 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 RQK++ R +MM A AT+++TNPTHYA+AL Y + AP +VAKG + +A ++R Sbjct: 241 RQKALRAKAARQRMMAAVKTATVVVTNPTHYAVALVYERGGGGAPRIVAKGMDDVAARIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++ IPI P LAR+LF +P++S IP +K VA +I ++ K Sbjct: 301 DIAQDNRIPIVANPPLARALF-TLPLDSEIPAEHFKVVAAIIAYVWKLK 348 >gi|28869179|ref|NP_791798.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato str. DC3000] gi|213967544|ref|ZP_03395692.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato T1] gi|301382881|ref|ZP_07231299.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tomato Max13] gi|302061091|ref|ZP_07252632.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tomato K40] gi|302131293|ref|ZP_07257283.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852419|gb|AAO55493.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato str. DC3000] gi|213927845|gb|EEB61392.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato T1] gi|331016989|gb|EGH97045.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 378 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F + GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMFGA-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL + ++ + D S++ L L A +++P L+ + + ++ + + Sbjct: 60 DLMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L++ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|330961236|gb|EGH61496.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 378 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 109/357 (30%), Positives = 186/357 (52%), Gaps = 13/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGSGGLLIFGS-DIAEMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP---GLLLFMMFG---IGSYLIQR 114 L + T+ L D S++ L L A +V+P +LL + G +G +L Sbjct: 60 ALMRDNFTITRETLMDQSYMGKALLSSGLHALVVVLPFLIAMLLAALVGPILLGGWLFTA 119 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P++ P F R++ G+KR+++ + LV +KS K +++ + L ++ Sbjct: 120 KPLM------PKFSRMNPAAGLKRMFAPSALVELLKSLGKFLIILAVALAVLNSERKDLI 173 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + H+ V + +A + +D+ + +Q + KL M+KQE++DE K Sbjct: 174 AIAHEPLEQAMIHSLIVVGWSSFWMACGLAFIAAVDVPFMLYQAHKKLLMTKQEVRDEHK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S GNP +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AK Sbjct: 234 NSDGNPEVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G +L+A K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 294 GSDLVALKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|160902843|ref|YP_001568424.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95] gi|160360487|gb|ABX32101.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95] Length = 363 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 107/348 (30%), Positives = 189/348 (54%), Gaps = 9/348 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE P+ +++E A EGN P S E ++ S L+ ++L F P + + + Sbjct: 18 ADPDKTEDPTPRRLEKAREEGNIPQSNEFNMAVSFLSISLFLWIIFEPLLNDIFKVFYDY 77 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL---IQRIPVLNLNH 122 L+ D LL + + L I +L F++ + S L IQ + Sbjct: 78 LSLDLDYSPTD------LLGYEITAHMNLYIKLILFFVVAVVVSTLLGMIQTKFLFTFKS 131 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K +++ +G KR++S+ ++V +K+ +K+ ++G + + N+F +L Sbjct: 132 LKLDLSKINPIKGFKRLFSLRSVVELIKALLKLTILGLLTYNIIKSNWFKILSLAGEETG 191 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 F V +L + + + L++ D + +++ +LKMSK E+K E K+ GNP I Sbjct: 192 FSFNVIFDLVINILFQLGIVLLLLSLFDFWYQRYEYKKELKMSKYEVKQERKEIEGNPEI 251 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K RQ+ + R+ R +MM+ A ++ITNPTHYA+A+ Y E AP++VAKG++ +A K Sbjct: 252 KQRQRELMRNLARSRMMQKVPEADVVITNPTHYAVAIEYKAEEMQAPIVVAKGKDEVAFK 311 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +R+IA++H IPI E P+LAR ++++V +N IP Y VA+++ +Y Sbjct: 312 IREIAFKHGIPILERPALAREIYEKVELNEEIPEDLYTLVAEVLAYVY 359 >gi|315281330|ref|ZP_07869978.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120] gi|313615028|gb|EFR88524.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120] Length = 348 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 102/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F L ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLANMESYSLFYLMEFG----KVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ LV +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|195953033|ref|YP_002121323.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1] gi|195932645|gb|ACG57345.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1] Length = 353 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 199/357 (55%), Gaps = 19/357 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-----LFFFSPGIYSVTS 60 A +NKTE + + +EGN S+E +++ L+ L LFF I+ + S Sbjct: 2 ASENKTEKATPYRRGKLKSEGNVAKSQE------VVSALLMLVSTGALFFIGYKIFILFS 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRL---VIPGLLLFMMFGIGSYLIQRIP 116 DL +L S +++D S T L LS +L + P +L ++ + Y++Q Sbjct: 56 DL-ILDGSL---RIDDPSFTPSDATKFLGLSFKKLLSDITPLFILAVLIVVFGYILQFGF 111 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + ++P+F +++ +G+K ++S+N L +K+ +K++L+ L ++ T++ Sbjct: 112 IFTFKPLEPNFSKLNPVDGLKNLFSLNALFELVKNSLKVMLLLIASFFILYFSFHTLVFS 171 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 +P L + K+LI I + L LD + + ++KMSKQE+KDE KQ Sbjct: 172 SYMSPSKGLSEIARLIFKLLISIGIIGLMLAGLDFAYKKFDYEKRIKMSKQEVKDEFKQF 231 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GN +K + + R +MM+ +A+++ITNPTH+A+ALRYI ++ AP++VAKGQ Sbjct: 232 EGNIEVKAKIRRRMMELSRSRMMQEVPKASVVITNPTHFAVALRYIPKQDRAPIVVAKGQ 291 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +AKK+ +IA +++P+ +P LAR+L+K V I IPP FYKAVA++I I +K Sbjct: 292 DYMAKKIIEIAELNDVPVVRKPELARALYKAVDIEEEIPPEFYKAVAEIIAYIVKRK 348 >gi|218689877|ref|YP_002398089.1| flagellar biosynthesis protein FlhB [Escherichia coli ED1a] gi|218427441|emb|CAR08339.2| flagellar export pore protein [Escherichia coli ED1a] Length = 382 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 110/364 (30%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52 +D D+KTEAP+ ++E A EG P SRE + L + C+I+ L S Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61 Query: 53 PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 G++ S+ +D +++L E + ++ L++ + L A L+ P +L ++F S Sbjct: 62 AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++P F +++ GIKRI+S +K+ +K ILVG++ L + Sbjct: 120 -------------LQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHH 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ + Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346 Query: 350 YHKK 353 + K Sbjct: 347 WQLK 350 >gi|107024383|ref|YP_622710.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia AU 1054] gi|116688291|ref|YP_833914.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia HI2424] gi|105894572|gb|ABF77737.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia AU 1054] gi|116646380|gb|ABK07021.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia HI2424] Length = 399 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 +KTEA + ++ E A EG SRE + F+ + A P G ++ Sbjct: 8 DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A LE + ++ LL ++A L +G +LI + Sbjct: 68 DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 118 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|206558545|ref|YP_002229305.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia J2315] gi|198034582|emb|CAR50448.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia J2315] Length = 399 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 +KTEA + ++ E A EG SRE + F+ + A P G ++ Sbjct: 8 DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A LE + ++ LL ++A L +G +LI + Sbjct: 68 DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 118 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|254246770|ref|ZP_04940091.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] gi|124871546|gb|EAY63262.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] Length = 414 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 +KTEA + ++ E A EG SRE + F+ + A P G ++ Sbjct: 23 DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 82 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A LE + ++ LL ++A L +G +LI + Sbjct: 83 DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 133 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 134 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 187 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 188 GLATQPLGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 247 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 248 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 307 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 308 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366 >gi|320325130|gb|EFW81199.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. glycinea str. B076] gi|320329389|gb|EFW85382.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ + Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|290893976|ref|ZP_06556951.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-071] gi|290556422|gb|EFD89961.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-071] Length = 348 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 102/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F L ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +KS + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKSLLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|218699549|ref|YP_002407178.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI39] gi|218369535|emb|CAR17304.1| flagellar export pore protein [Escherichia coli IAI39] Length = 382 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 196/367 (53%), Gaps = 35/367 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 56 ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 +S+ +D +++L E + ++ L++ + L A L+ P +L ++F Sbjct: 59 MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFS 116 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 S ++P F +++ GIKRI+S +K+ +K ILVG++ L Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFL 163 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 ++ M+ ++ +P + + +A V ++++L + + D+ + KL+MS+ Sbjct: 164 WHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSR 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMLRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKM 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343 Query: 347 YKIYHKK 353 ++ K Sbjct: 344 AWVWQLK 350 >gi|312621587|ref|YP_004023200.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor kronotskyensis 2002] gi|312202054|gb|ADQ45381.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor kronotskyensis 2002] Length = 366 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 187/344 (54%), Gaps = 1/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S I + S Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFF-SN 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 LEDIS LL+ + ++ ++V+P + M Q ++ +K SF++ Sbjct: 75 LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAAIVEWAQSSFLITGQSLKMSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYCYTQTFAKKLLEMYEMNVFTIVRFSF 194 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A + Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H I I E LAR+L+ + IPP Y+AVA+++ +Y K Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358 >gi|323703184|ref|ZP_08114837.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans DSM 574] gi|323531843|gb|EGB21729.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans DSM 574] Length = 354 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 104/349 (29%), Positives = 191/349 (54%), Gaps = 2/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + KTE + +++++A +G P S + + +LA I+ L I Sbjct: 3 EGSQEKTEQATPRRLQEARRKGQVPKSADLNGALLLLAAGIFALMAKDSLISHTQRAFFG 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + R+ +D S +V L +++ +P L+ M+ +G+ + Q + + Sbjct: 63 YFNNLVVRRPQD-SQLVEYLIDFTVNIFASFMPFFLILMVVAVGANMAQVGFLFAPEVIL 121 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P + ++ G+KRI+S +L +KS +K+ILVG +I ++ + +L + P ++ Sbjct: 122 PKLEHLNPINGLKRIFSGRSLFELVKSILKVILVGWVIYAAVRGEFANLLAIFQSPPQTM 181 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L KV+I L++LD+ + + + +++MSKQE+K+E KQ+ G+P IK Sbjct: 182 LDQVLTVALKVIIWGTAAYLALSILDLMYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + R + + + + +AT+++TNPTHYA+AL+Y + + DAPV+VAKG +L+AK++R Sbjct: 242 WLRRRQRQLLMNLVRKEVPQATVVVTNPTHYAVALKY-ERDMDAPVVVAKGVDLLAKQIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++A EH+IP+ E +AR L+ V I AIP Y+AVA+++ +Y K Sbjct: 301 EVAREHDIPVIENVEVARFLYAHVEIGQAIPVEMYQAVAEILAMVYRLK 349 >gi|323968302|gb|EGB63709.1| flagellar biosynthetic protein FlhB [Escherichia coli M863] gi|327253009|gb|EGE64663.1| flagellar biosynthetic protein FlhB [Escherichia coli STEC_7v] Length = 382 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52 +D D+KTEAP+ ++E A EG P SRE + L + C+I+ L S Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61 Query: 53 PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 G++ S+ +D +++L E + ++ L++ + L A L+ P +L ++F S Sbjct: 62 AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++P F +++ GIKR++S +K+ +K ILVG++ L + Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHH 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ + Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346 Query: 350 YHKK 353 + K Sbjct: 347 WQLK 350 >gi|323174603|gb|EFZ60224.1| flagellar biosynthetic protein FlhB [Escherichia coli LT-68] Length = 382 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52 +D D+KTEAP+ ++E A EG P SRE + L + C+I+ L S Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61 Query: 53 PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 G++ S+ +D +++L E + ++ L++ + L A L+ P +L ++F S Sbjct: 62 AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++P F +++ GIKR++S +K+ +K ILVG++ L + Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ + Sbjct: 287 KVVAKGAGLVALRIREIGVENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346 Query: 350 YHKK 353 + K Sbjct: 347 WQLK 350 >gi|170683078|ref|YP_001743365.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5] gi|170520796|gb|ACB18974.1| flagellar biosynthetic protein FlhB [Escherichia coli SMS-3-5] Length = 382 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|78064847|ref|YP_367616.1| flagellar biosynthesis protein FlhB [Burkholderia sp. 383] gi|77965592|gb|ABB06972.1| Flagellar biosynthetic protein FlhB [Burkholderia sp. 383] Length = 398 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 178/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 +KTEA + ++ E A EG SRE + F+ + A P G ++ Sbjct: 8 DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGGHLQAMLRGAFTF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D + +L++A LE + ++ +L ++A L +G +LI Sbjct: 68 DRATAFDTNRMLSAAGSASLEGFAALLPILALTGVAA---------LLAPMALGGWLI-- 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 117 ----SSKTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLGVALPDALHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|323527726|ref|YP_004229879.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001] gi|323384728|gb|ADX56819.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001] Length = 401 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/352 (30%), Positives = 183/352 (51%), Gaps = 19/352 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE+ + ++++ A EG SRE S F+ +LA + ++ S S+ L +L + Sbjct: 8 EKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMS---GSIGEHLQAMLRA 63 Query: 69 ATQRKLEDISHIVFLLTHLSLS----ASRLVIPGLLLFMMFGIGSYLIQRIPV-----LN 119 A H TH ++ ASR + LL + F G+ + L+ Sbjct: 64 AFT-----FDHASAFETHRMMAGAGAASREGLYALLPILAF-TGAAALLAPMALGGWQLS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P F R++ G+ +I+SIN + S K ++VG I ++ +L + Sbjct: 118 AKGLEPKFDRLNPIAGLGKIFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALATQ 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+ Sbjct: 178 PLHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+ Sbjct: 238 PHVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLV 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y Sbjct: 298 AARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQ 349 >gi|331647476|ref|ZP_08348568.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] gi|330911689|gb|EGH40199.1| flagellar biosynthesis protein FlhB [Escherichia coli AA86] gi|331043200|gb|EGI15338.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] Length = 382 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|134094535|ref|YP_001099610.1| part of export apparatus for flagellar proteins [Herminiimonas arsenicoxydans] gi|133738438|emb|CAL61483.1| Flagellar biosynthetic protein FlhB [Herminiimonas arsenicoxydans] Length = 390 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 15/350 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S +K+E A +G+ P SRE + + +L F+F+ G ++ ++L+ +LAS Sbjct: 8 EKTEPASPRKLEQAREQGDVPRSRELATCTLLLGA--SAAFWFTGG--NMIAELNSMLAS 63 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 E + LL H + S +L+I P L+ ++ + S ++ + + ++P Sbjct: 64 GLSFDREMAFDMELLLAHAAASIIKLLIAFAPAALILIVVALASPMLIGGWLFSAQALQP 123 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F R++ +G+ + S + V K+ K IL+G I + +L +S P L Sbjct: 124 NFGRMNPIKGLGNMVSTRSAVELGKAIAKTILIGCIAWTVMKYEIDGVL-ALSVTP---L 179 Query: 186 YHAFFTVRKVLIMILLFIAT--LTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPI 241 V +L++ FI + + + I Y W KL MS+Q+++ E K+S GNP Sbjct: 180 QSGIEQVGHILLISFTFIVSGLIIIAGIDAPYQMWQHAKKLMMSRQDVRQESKESDGNPE 239 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK + + R R +MM A +++TNPTHYA+AL+Y + AP +VAKG + +A Sbjct: 240 IKAKIRQQQREMARRRMMTEVPTADVVVTNPTHYAVALKYSENGMRAPTVVAKGADEVAA 299 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+IA E+N+ + E P LAR+LF+ + IP Y AVA+++ ++ Sbjct: 300 KIREIALENNVVMLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQ 349 >gi|331653290|ref|ZP_08354295.1| flagellar biosynthetic protein FlhB [Escherichia coli M718] gi|331049388|gb|EGI21460.1| flagellar biosynthetic protein FlhB [Escherichia coli M718] Length = 382 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 197/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S+ +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSVQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGSENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|238927446|ref|ZP_04659206.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] gi|238884728|gb|EEQ48366.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] Length = 374 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/356 (30%), Positives = 181/356 (50%), Gaps = 19/356 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + S+ + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDYIYLSIAGYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 ++ Q + D +I+ + +++ ++ P + M+ G+ Q N ++ Sbjct: 84 FSNLNQ--VVDAENILRIFIGIAIVLAKTAFPIMFAIMLIGLAINFFQVGLTFNTESIEF 141 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF--------I 177 +++ G RI+S +LV KSF KI+++G + + E M F + Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S I + AF + +++M L+ D G+ Q LKM+KQE+KDE+KQS Sbjct: 202 SLVAEIIFHMAFIVIGVIMVMALM--------DYGYQKWQTTQDLKMTKQEVKDEMKQSE 253 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK + + R +MM+ +A +IITNPTH+A+AL Y Q AP++VAKGQ+ Sbjct: 254 GDPQIKGKIRQKQRQMAMARMMKEVPKADVIITNPTHFAIALSY-QQGMSAPLVVAKGQD 312 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++A+++++IA E +PI E LAR+++ V I AIP Y+AVA+++ +Y K Sbjct: 313 IVAQRIKEIAREARVPIVENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368 >gi|291562038|emb|CBL40854.1| flagellar biosynthetic protein FlhB [butyrate-producing bacterium SS3/4] Length = 357 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/345 (31%), Positives = 190/345 (55%), Gaps = 6/345 (1%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE P++KK DA EGN SR+ + ILA + + + + P IY + + Sbjct: 8 KTEQPTAKKRRDARKEGNIFQSRDVATVV-ILAGIFFGIRIWLPFIYGQMKNYMTWVIDG 66 Query: 70 TQRKLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 R ED+ + +VF+ + L + + LLL ++ GI ++ +Q ++ ++P + Sbjct: 67 AARSSEDMLSASLVFVTLSVFLKCALPL---LLLALLLGIVAHGVQTRFNVSFKSIRPKW 123 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ GIKR++S+ N V +K+ +KI L+ ++ L ++ M I NP + + Sbjct: 124 NRLNPLSGIKRLFSMKNAVELVKNSIKITLLLVLLYNILKQDLQPMASMIDMNPAASAAY 183 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +LI + + + D + ++ +L+M+KQE+KDE KQ+ GNP IKNR K Sbjct: 184 MMKMIFDLLIRVCIAFMVIAFGDYLYQRWEYEKELRMTKQEVKDEYKQTEGNPEIKNRIK 243 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 S+ R +MM+ +A +II NPTH A+AL+Y ++APV++AKG + +A ++ K+ Sbjct: 244 SLQRQMASSRMMQKVPQADVIIRNPTHVAIALKYDPDHDNAPVVLAKGLDELALRIVKVG 303 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 E+N+ E LAR+++ ++ IP FY AVA+++ +Y + Sbjct: 304 EENNVYTIENKPLARAMYNSCELDRPIPSEFYTAVAEILVYLYKQ 348 >gi|220925376|ref|YP_002500678.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS 2060] gi|219949983|gb|ACL60375.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS 2060] Length = 353 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ + +++TE P+ K+++DA+ G+ S E + + + LL Sbjct: 1 MAGDTEQEDRTEEPTLKRLDDAIKRGDVATSVEVNTLFLLGGFTLVLLVAAGSAARGFAL 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ LAS D + + + V + + G+ L+Q V Sbjct: 61 DMRGFLAS-LHAVPSDAAAYQAVARRALAALGLAVAVPVGAAVAAGLAGGLLQHPFVWTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++RVS G++R++ F K VKI LVGT+ + L + + F + Sbjct: 120 ETLSAKWERVSPLAGLRRLFGPEAWFQFGKGLVKIALVGTVAGLVLWGDRDRLEAFARLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +IL V +++ IL L + D + +W ++L+M++ EIK+E+K+S GNP Sbjct: 180 PAAILPATLVLVLRLMAGILAAYVVLALGDAVYQRLRWRARLRMTRTEIKEELKESDGNP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + +R R +MM A AT+++ NPTH+A+ALRY +T APV VAKG + +A Sbjct: 240 EVKARLRQLRHARARKRMMAAVPTATVVVANPTHFAVALRY-ETGMAAPVCVAKGVDALA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA + +P+ E P LAR+L V I++AIP YKAVA++I + ++ Sbjct: 299 LRIREIAGANGVPVVENPPLARALHATVEIDAAIPTEHYKAVAEVIGFVLRQR 351 >gi|395390|emb|CAA52218.1| flagellar biosynthetic protein [Bacillus subtilis] Length = 360 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/351 (32%), Positives = 187/351 (53%), Gaps = 13/351 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65 KTE + KK +D +G S + + S ++ L+ L + G Y + S + Sbjct: 13 EKTEKATPKKRKDTRKKGQVAKSSDVN---SAVSLLVIFLSLIAIGPYMRDRLLSFIETF 69 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P Sbjct: 70 YTESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQP 128 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L Sbjct: 129 KLEKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEAL 188 Query: 186 YHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 F + L M L L +L D + + +KMSKQ+IKDE K+S G+PII Sbjct: 189 S---FVSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPII 245 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K Sbjct: 246 KSKIKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALK 305 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RKIA EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 306 IRKIAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|154686055|ref|YP_001421216.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens FZB42] gi|154351906|gb|ABS73985.1| FlhB [Bacillus amyloliquefaciens FZB42] Length = 359 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 192/358 (53%), Gaps = 27/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS-------LFSSILACLIYL---LFFFSPGIYSV 58 KTE + KK +D +G S + + +F S++A Y+ L F Y+ Sbjct: 13 EKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYTK 72 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + LH L ASA H +F+ T +S ++ P +L+ ++ G+ S +Q + Sbjct: 73 SISLH-LSASAV--------HELFVDTVKDISL--ILAPIMLVALVAGVVSNYMQVGFLF 121 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + +KP ++S +G KRIYS+ +V +KS +KI +VG + L +Y +L Sbjct: 122 SAEVLKPDLNKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPL 181 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQ 235 P +L F + L M L L +L D + + ++MSKQ+IKDE K+ Sbjct: 182 LTPAEVLT---FVSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKK 238 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+PIIK++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG Sbjct: 239 SEGDPIIKSKIKQKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKG 298 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A K+R+IA EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 299 VDHLALKIRQIAKEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356 >gi|304438443|ref|ZP_07398383.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368526|gb|EFM22211.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 374 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/348 (30%), Positives = 180/348 (51%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + S+ S + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFTLKLLWDSIYLSIASYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + Q D +I+ + + + ++ P + M+ G+ Q N ++ Sbjct: 84 FTNLNQSV--DTENIIHIFIGIIVVLAKTAFPVMFAIMLIGLAINFFQVGLTFNTESIEF 141 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G RI+S +LV KSF KI+++G + + E M F+ + + L Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ +++ I + ++D G+ Q LKM+KQE+KDE+KQS G+P IK + Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGK 261 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +I+TNPTHYA+AL Y Q AP++VAKGQ+L+A+++++ Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIVTNPTHYAIALSY-QQGMSAPLVVAKGQDLVAQRIKE 320 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E +PI E LAR+++ V I AIP Y+AVA+++ +Y K Sbjct: 321 IAREARVPIIENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368 >gi|218705380|ref|YP_002412899.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026] gi|293405373|ref|ZP_06649365.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412] gi|298381016|ref|ZP_06990615.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302] gi|300899130|ref|ZP_07117412.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] gi|218432477|emb|CAR13370.1| flagellar export pore protein [Escherichia coli UMN026] gi|291427581|gb|EFF00608.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412] gi|298278458|gb|EFI19972.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302] gi|300357248|gb|EFJ73118.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] Length = 382 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52 +D D+KTEAP+ ++E A EG P SRE + L + C+I+ L S Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61 Query: 53 PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 G++ S+ +D +++L E + ++ L++ + L A L+ P +L ++F S Sbjct: 62 AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++P F +++ GIKR++S +K+ +K ILVG++ L + Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ + Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346 Query: 350 YHKK 353 + K Sbjct: 347 WQLK 350 >gi|116872068|ref|YP_848849.1| flagellar biosynthesis protein FlhB [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740946|emb|CAK20066.1| flagellar biosynthetic protein FlhB, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 348 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F L ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYAVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|330876032|gb|EGH10181.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 378 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F + GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMFGT-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ + D S++ L L A +++P L+ + + ++ + + Sbjct: 60 ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L++ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|300917538|ref|ZP_07134195.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1] gi|300415243|gb|EFJ98553.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1] Length = 382 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|218673114|ref|ZP_03522783.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56] Length = 137 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 72/127 (56%), Positives = 104/127 (81%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + Sbjct: 1 MTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAR 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA Sbjct: 61 EENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVA 120 Query: 344 QLIYKIY 350 +LI+++Y Sbjct: 121 ELIHRVY 127 >gi|15802292|ref|NP_288317.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 EDL933] gi|12515942|gb|AAG56870.1|AE005410_6 putative part of export apparatus for flagellar proteins [Escherichia coli O157:H7 str. EDL933] Length = 382 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 197/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ V I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGXENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|16802721|ref|NP_464206.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes EGD-e] gi|46906930|ref|YP_013319.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes serotype 4b str. F2365] gi|47091642|ref|ZP_00229438.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 4b H7858] gi|47095244|ref|ZP_00232855.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 1/2a F6854] gi|217965223|ref|YP_002350901.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|224498762|ref|ZP_03667111.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes Finland 1988] gi|224502016|ref|ZP_03670323.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL R2-561] gi|226223310|ref|YP_002757417.1| flagellar biosynthetic protein flhB [Listeria monocytogenes Clip81459] gi|254824041|ref|ZP_05229042.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-194] gi|254829336|ref|ZP_05234023.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL N3-165] gi|254830330|ref|ZP_05234985.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 10403S] gi|254900085|ref|ZP_05260009.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes J0161] gi|254911362|ref|ZP_05261374.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932041|ref|ZP_05265400.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes HPB2262] gi|254935689|ref|ZP_05267386.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900] gi|254992440|ref|ZP_05274630.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-064] gi|255521624|ref|ZP_05388861.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-175] gi|284801009|ref|YP_003412874.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5578] gi|284994151|ref|YP_003415919.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5923] gi|16410068|emb|CAC98757.1| lmo0679 [Listeria monocytogenes EGD-e] gi|46880196|gb|AAT03496.1| putative flagellar biosynthetic protein flhB [Listeria monocytogenes serotype 4b str. F2365] gi|47016315|gb|EAL07237.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019961|gb|EAL10698.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 4b H7858] gi|217334493|gb|ACK40287.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|225875772|emb|CAS04475.1| Putative flagellar biosynthetic protein flhB [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601748|gb|EEW15073.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL N3-165] gi|258608271|gb|EEW20879.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900] gi|284056571|gb|ADB67512.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5578] gi|284059618|gb|ADB70557.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5923] gi|293583594|gb|EFF95626.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes HPB2262] gi|293589298|gb|EFF97632.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293593270|gb|EFG01031.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-194] gi|307570218|emb|CAR83397.1| flagellar biosynthetic protein [Listeria monocytogenes L99] gi|328467248|gb|EGF38328.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 1816] gi|328475644|gb|EGF46393.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 220] gi|332311104|gb|EGJ24199.1| Flagellar biosynthesis protein [Listeria monocytogenes str. Scott A] Length = 348 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F L ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|15831844|ref|NP_310617.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. Sakai] gi|168747910|ref|ZP_02772932.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4113] gi|168757917|ref|ZP_02782924.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4401] gi|168762323|ref|ZP_02787330.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4501] gi|168770866|ref|ZP_02795873.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4486] gi|168776570|ref|ZP_02801577.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4196] gi|168783183|ref|ZP_02808190.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4076] gi|168789748|ref|ZP_02814755.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC869] gi|168801881|ref|ZP_02826888.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC508] gi|195939584|ref|ZP_03084966.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. EC4024] gi|208810589|ref|ZP_03252465.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4206] gi|208816756|ref|ZP_03257876.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4045] gi|208821749|ref|ZP_03262069.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4042] gi|209400586|ref|YP_002270964.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4115] gi|217328966|ref|ZP_03445047.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. TW14588] gi|254793504|ref|YP_003078341.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. TW14359] gi|261227619|ref|ZP_05941900.1| predicted flagellar export pore protein [Escherichia coli O157:H7 str. FRIK2000] gi|261258215|ref|ZP_05950748.1| predicted flagellar export pore protein [Escherichia coli O157:H7 str. FRIK966] gi|13362058|dbj|BAB36013.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. Sakai] gi|187768084|gb|EDU31928.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4196] gi|188017418|gb|EDU55540.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4113] gi|188999430|gb|EDU68416.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4076] gi|189355171|gb|EDU73590.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4401] gi|189360277|gb|EDU78696.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4486] gi|189367382|gb|EDU85798.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4501] gi|189370698|gb|EDU89114.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC869] gi|189376036|gb|EDU94452.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC508] gi|208725105|gb|EDZ74812.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4206] gi|208731099|gb|EDZ79788.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4045] gi|208741872|gb|EDZ89554.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4042] gi|209161986|gb|ACI39419.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4115] gi|209767300|gb|ACI81962.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|209767302|gb|ACI81963.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|209767306|gb|ACI81965.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|217318313|gb|EEC26740.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. TW14588] gi|254592904|gb|ACT72265.1| predicted flagellar export pore protein [Escherichia coli O157:H7 str. TW14359] gi|320188579|gb|EFW63241.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. EC1212] gi|326342258|gb|EGD66039.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. 1044] gi|326343808|gb|EGD67570.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. 1125] Length = 382 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 197/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ V I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|303240269|ref|ZP_07326788.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus CD2] gi|302592179|gb|EFL61908.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus CD2] Length = 400 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/349 (31%), Positives = 190/349 (54%), Gaps = 7/349 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VTSDLHVLLA 67 +KTE + KK E A EG SRE + + +L CL + +Y + + ++ A Sbjct: 49 DKTEKATPKKREKAREEGQVLQSREMTA-AIVLLCLFITVKIAGGYMYEQIYAYFKIVFA 107 Query: 68 SATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + KL D + ++ L L L ++V P + ++ GI S Q + + Sbjct: 108 DYS--KLTDLFTVEGLIKLFIDLLLRFLKIVAPVFAVALITGIVSGYAQVGFLFTTKTLA 165 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F R++ G KRI+S+ ++ +KS +KI+++G I L + +L+ ++ + SI Sbjct: 166 FKFSRINPLSGFKRIFSLRSVTELVKSILKIVVIGYIGYSYLADEAKNILNTMNMDVISI 225 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + T V I + + + L VLD G+ + ++ LKMSKQEIK E K++ GNP +K Sbjct: 226 AAYICVTSINVAIRMCIAMLILGVLDYGYQWWEYEKSLKMSKQEIKQENKEAEGNPEVKA 285 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + + R +M++ +A ++ITNPTH+A+A++Y +DAP+++AKGQ+ IA +++ Sbjct: 286 KIRQKQRQIALRRMLQDIPKADVVITNPTHFAVAIKYDPKVSDAPIVIAKGQDYIALRIK 345 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA E+ + I E LAR+L+ V I IPP ++AVA+++ +Y K Sbjct: 346 EIAKENKVEIVENKPLARTLYASVDIGERIPPELFQAVAEVLAFVYSLK 394 >gi|331683387|ref|ZP_08383988.1| flagellar biosynthetic protein FlhB [Escherichia coli H299] gi|331079602|gb|EGI50799.1| flagellar biosynthetic protein FlhB [Escherichia coli H299] Length = 382 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 196/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+T L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLTRRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSILVGSVTGFYLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|300904767|ref|ZP_07122595.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1] gi|301306905|ref|ZP_07212951.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1] gi|300403281|gb|EFJ86819.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1] gi|300837880|gb|EFK65640.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1] gi|315257287|gb|EFU37255.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 85-1] Length = 382 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52 +D D+KTEAP+ ++E A EG P SRE + L + C+I+ L S Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61 Query: 53 PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 G++ S+ +D +++L E + ++ L++ + L A L+ P +L ++F S Sbjct: 62 AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++P F +++ GIKR++S +K+ +K ILVG++ L + Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ + Sbjct: 287 KVVAKGAGLLALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346 Query: 350 YHKK 353 + K Sbjct: 347 WQLK 350 >gi|17549613|ref|NP_522953.1| flagellar biosynthetic FlhB transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431867|emb|CAD18545.1| probable flagellar biosynthetic flhb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 387 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 184/366 (50%), Gaps = 33/366 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE S++++E A EG+ P SRE F +LA L+ I S Sbjct: 1 MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFV-LLATGALGLWVMGESIVRTAS 58 Query: 61 DLHVLLASATQ-------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 LA + R E ++ L++ V+ GL+L ++ S L Sbjct: 59 SF---LARCLEFHRYDYTRAQEQWQYVGAQFGPLAM-----VLAGLILMLVLAALSPLAL 110 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 ++ + P R+ G+KR++S+ L+ + K++LVG + ++ + Sbjct: 111 TRGAVSFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGV-------GWWLI 163 Query: 174 L----DFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMS 225 L DF+ P L V + L +A + +L D+ + Q+ K +M+ Sbjct: 164 LHYRDDFVEL-PRQDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMT 222 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E++ E ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E Sbjct: 223 KEEVRKEHRESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQE 282 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP ++AKG +++A K+R++ EH IP+ E P LAR+L++ I IP Y AVA++ Sbjct: 283 GGAPRVLAKGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEV 342 Query: 346 IYKIYH 351 + +Y Sbjct: 343 LAYVYQ 348 >gi|307264886|ref|ZP_07546448.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii Rt8.B1] gi|306920144|gb|EFN50356.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii Rt8.B1] Length = 363 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/348 (31%), Positives = 185/348 (53%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73 Query: 68 --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|300914395|ref|ZP_07131711.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561] gi|307724369|ref|YP_003904120.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513] gi|300889330|gb|EFK84476.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561] gi|307581430|gb|ADN54829.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513] Length = 363 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/347 (31%), Positives = 183/347 (52%), Gaps = 2/347 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67 KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 15 EKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLYT 74 Query: 68 -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S + ++ I L T++ A + +P +LL + + S +Q V + Sbjct: 75 YSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAFK 134 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F+R++ EG KRI+S LV +KS K+ ++ I+ L Y + + + IL Sbjct: 135 FERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDILK 194 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 195 YALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAEI 254 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++ Sbjct: 255 RRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKEE 314 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 315 AKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|291617775|ref|YP_003520517.1| FlhB [Pantoea ananatis LMG 20103] gi|291152805|gb|ADD77389.1| FlhB [Pantoea ananatis LMG 20103] Length = 397 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 191/358 (53%), Gaps = 16/358 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57 +SEN + + KTE+P++ ++E A EG P SRE +S+L L ++ + G Sbjct: 15 VSEN-SDEEKTESPTAHRLEKAREEGQIPRSRE---LTSLLMLLAGIMILWVGGAMMAHR 70 Query: 58 ----VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 V++ L A T K+ I+ + +L + A ++P L ++ I S ++ Sbjct: 71 LAAMVSTGLRFDHAMVTDDKI-----IIAHVGNLIMQAIAALLPLLGGLVLVAIASPMLL 125 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 V++ +K F +++ G+KR+++ K +K ILVG + + ++ M Sbjct: 126 GGVVISGKSIKVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVGCVAGWYVWSHWPDM 185 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L I+ +P + L H + +++L + + D+ W + + KL+MS+QEI+DE Sbjct: 186 LRLIAESPTTALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHFKKLRMSRQEIRDEH 245 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ G+P +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++A Sbjct: 246 KQQEGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIA 305 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG IA ++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 306 KGAGDIALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYGAVAEVLAWVWQ 363 >gi|209695727|ref|YP_002263657.1| flagellar biosynthesis protein FlhB [Aliivibrio salmonicida LFI1238] gi|208009680|emb|CAQ79979.1| polar flagellar assembly protein FlhB [Aliivibrio salmonicida LFI1238] Length = 376 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 113/362 (31%), Positives = 195/362 (53%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 M+++D + +TE +SK+++ A ++G S+E AS+ S+L C L +F + Sbjct: 1 MADSDGQE-RTEDATSKRLQQAKDKGQVARSKELASV--SVLVCGAISLMWFGDEVGKAL 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL----LLFMMFGIGSYLIQRI 115 + S ++ ++ D + LL + + LV P L +LF+ IG+ + I Sbjct: 58 LSIMSRFFSISREEIFDTNK---LLEIVGGALVALVFPVLKILLMLFVAALIGAAGLGGI 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYF 171 + P +++ GIKR++ + + V +KS +K+ LVG +I S + + Sbjct: 115 S-FSAEAAMPKPSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGTAFYLINKSKADLFQ 173 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 LD +N ++H+ + +++I + + +DI + Q ++LKM+KQEIKD Sbjct: 174 LSLDTYPSN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEIKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K++ G P +K R + + R + +MM A +I+TNP HY++ALRY QT++ AP++ Sbjct: 230 EYKETEGKPEVKGRIRMLQREMTQRRMMADVPSADVIVTNPEHYSVALRYDQTKDSAPIV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + IA K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ Sbjct: 290 VAKGVDHIAMKIREIAREHNIDILPAPPLARALYHSTEVEQQIPDGLFAAVAQILAYIFQ 349 Query: 352 KK 353 K Sbjct: 350 MK 351 >gi|300764490|ref|ZP_07074483.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL N1-017] gi|300514844|gb|EFK41898.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL N1-017] Length = 348 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F L ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDEVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|324007265|gb|EGB76484.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 57-2] Length = 382 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|24113260|ref|NP_707770.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str. 301] gi|30063328|ref|NP_837499.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str. 2457T] gi|24052262|gb|AAN43477.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 2a str. 301] gi|30041580|gb|AAP17308.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 2a str. 2457T] gi|281601322|gb|ADA74306.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 2002017] gi|313650088|gb|EFS14501.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2a str. 2457T] gi|332757344|gb|EGJ87681.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2747-71] gi|332757435|gb|EGJ87770.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-671] gi|332766606|gb|EGJ96810.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2930-71] gi|333017652|gb|EGK36964.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-304] Length = 397 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|162139338|ref|YP_689375.2| flagellar biosynthesis protein FlhB [Shigella flexneri 5 str. 8401] Length = 397 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|167040311|ref|YP_001663296.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514] gi|166854551|gb|ABY92960.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514] Length = 360 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/347 (31%), Positives = 183/347 (52%), Gaps = 2/347 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67 KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 12 EKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLYT 71 Query: 68 -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S + ++ I L T++ A + +P +LL + + S +Q V + Sbjct: 72 YSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAFK 131 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F+R++ EG KRI+S LV +KS K+ ++ I+ L Y + + + IL Sbjct: 132 FERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDILK 191 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 192 YALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAEI 251 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++ Sbjct: 252 RRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKEE 311 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 312 AKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358 >gi|170731604|ref|YP_001763551.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia MC0-3] gi|169814846|gb|ACA89429.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia MC0-3] Length = 399 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 178/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 +KTEA + ++ E A EG SRE + F+ + A P G ++ Sbjct: 8 DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A LE + ++ LL ++A L +G +LI + Sbjct: 68 DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 118 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLGVALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|16078701|ref|NP_389520.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. 168] gi|221309516|ref|ZP_03591363.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. 168] gi|221313840|ref|ZP_03595645.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318763|ref|ZP_03600057.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. JH642] gi|221323035|ref|ZP_03604329.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. SMY] gi|321315405|ref|YP_004207692.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5] gi|7404374|sp|P35538|FLHB_BACSU RecName: Full=Flagellar biosynthetic protein flhB gi|2634010|emb|CAB13511.1| component of the flagellar export machinery [Bacillus subtilis subsp. subtilis str. 168] gi|320021679|gb|ADV96665.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5] Length = 360 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 184/348 (52%), Gaps = 7/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 13 EKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYTE 72 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P + Sbjct: 73 SLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKLE 131 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L Sbjct: 132 KLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALS-- 189 Query: 189 FFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + L M L L +L D + + +KMSKQ+IKDE K+S G+PIIK++ Sbjct: 190 -FVSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSK 248 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RK Sbjct: 249 IKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRK 308 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 309 IAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|312792666|ref|YP_004025589.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179806|gb|ADQ39976.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor kristjanssonii 177R1B] Length = 366 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 104/346 (30%), Positives = 191/346 (55%), Gaps = 3/346 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + +K ++A G SRE + ++L +++L F +S + + S Sbjct: 15 TKTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFAYSSIVEPLQQGSKYFF-S 73 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 LED+ LL+ + ++ ++++P L M+ Q ++ +K SF+ Sbjct: 74 NLNYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLITGQSLKMSFQ 133 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFISANPHSILYH 187 +++ EG KRI+SIN++V +KS +K++++G S T+++ +L+ N +I+ Sbjct: 134 KINPIEGFKRIFSINSVVELIKSILKVLIIG-YTGYSYTQSFAKKLLEMYEMNVLTIVKF 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 +F + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + Sbjct: 193 SFDSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIR 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A Sbjct: 253 ERQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H I I E LAR+L+ I IPP Y+AVA+++ +Y K Sbjct: 313 IKHRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358 >gi|312126838|ref|YP_003991712.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor hydrothermalis 108] gi|311776857|gb|ADQ06343.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor hydrothermalis 108] Length = 366 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 190/345 (55%), Gaps = 3/345 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S I + S Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIEPLQQGSKYFF-SN 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 LED+ LL+ + ++ ++V+P L M Q ++ +K SF++ Sbjct: 75 LNYNLEDVRDASRLLSFIITTSLKMVLPFCLTIMFVATIVEWAQSSFLITAQSLKMSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFISANPHSILYHA 188 ++ EG KRI+SIN++V +KS +K++++G S T+++ +L+ N +I+ + Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIG-YTGYSYTQSFAKKLLEMYEMNVLTIVKFS 193 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + Sbjct: 194 FDSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRE 253 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A Sbjct: 254 RQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAI 313 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H I I E LA++L+ I IPP Y+AVA+++ +Y K Sbjct: 314 KHRIEIVENRELAKALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358 >gi|297538882|ref|YP_003674651.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301] gi|297258229|gb|ADI30074.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301] Length = 394 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 186/361 (51%), Gaps = 21/361 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE SSK++E+A EG+ P SRE + + + + +L + L Sbjct: 3 EDSDLEKTEQASSKRLEEARKEGDVPRSRELATVTVLFTAGLTILIMSE----HLNQALK 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNL 120 +++ Q LL + S S L+ P L+ + I + ++ + + Sbjct: 59 TTMSAGLQFDRTAAFEPTVLLMRTADSISSLLTAFAPLALILVAVAIAAPVLVGGWIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS-- 178 P F R++ +G+ I S N+LV +KS K++LVG + + ++ + +L + Sbjct: 119 KAFVPQFSRLNPIKGLTNIISKNSLVELVKSIAKVMLVGIVAYVVISHDMEPILTLSTLP 178 Query: 179 -----ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 A S++ F T+ + L+FIA + D+ + + + +KLKM+K+E++ E Sbjct: 179 LKSSIAQVGSLMLTGFLTI----VSTLVFIAAI---DVPYQLYHYANKLKMTKEEVRQES 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K+S GNP IK + + R + +MM A ++ITNPTHYA+A++Y APV+VA Sbjct: 232 KESDGNPEIKAKIRQQQREMAKRRMMSEIPNADVVITNPTHYAVAIKYQDEGMRAPVVVA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A K+R++A EH + I E P LAR+L+ + + IP Y AVA+++ ++ + Sbjct: 292 KGADEVALKIREVAGEHKVLIMESPKLARALYAHTELGNEIPEALYSAVAEILAYVFQMR 351 Query: 354 I 354 I Sbjct: 352 I 352 >gi|326389464|ref|ZP_08211031.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus JW 200] gi|325994469|gb|EGD52894.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus JW 200] Length = 363 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/348 (31%), Positives = 185/348 (53%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73 Query: 68 --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMKRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|26248146|ref|NP_754186.1| flagellar biosynthesis protein FlhB [Escherichia coli CFT073] gi|91211104|ref|YP_541090.1| flagellar biosynthesis protein FlhB [Escherichia coli UTI89] gi|110641997|ref|YP_669727.1| flagellar biosynthesis protein FlhB [Escherichia coli 536] gi|117624031|ref|YP_852944.1| flagellar biosynthesis protein FlhB [Escherichia coli APEC O1] gi|191172970|ref|ZP_03034504.1| flagellar biosynthetic protein FlhB [Escherichia coli F11] gi|218558744|ref|YP_002391657.1| flagellar biosynthesis protein FlhB [Escherichia coli S88] gi|227885693|ref|ZP_04003498.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972] gi|237705835|ref|ZP_04536316.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA] gi|300994042|ref|ZP_07180661.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1] gi|301050765|ref|ZP_07197623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1] gi|306814291|ref|ZP_07448457.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] gi|26108550|gb|AAN80753.1|AE016762_6 Flagellar biosynthetic protein flhB [Escherichia coli CFT073] gi|91072678|gb|ABE07559.1| flagellar biosynthetic protein FlhB [Escherichia coli UTI89] gi|110343589|gb|ABG69826.1| flagellar biosynthetic protein FlhB [Escherichia coli 536] gi|115513155|gb|ABJ01230.1| flagellar biosynthesis protein B [Escherichia coli APEC O1] gi|190906681|gb|EDV66286.1| flagellar biosynthetic protein FlhB [Escherichia coli F11] gi|218365513|emb|CAR03240.1| flagellar export pore protein [Escherichia coli S88] gi|226900592|gb|EEH86851.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA] gi|227837266|gb|EEJ47732.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972] gi|294491560|gb|ADE90316.1| flagellar biosynthetic protein FlhB [Escherichia coli IHE3034] gi|300297582|gb|EFJ53967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1] gi|300406410|gb|EFJ89948.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1] gi|305852450|gb|EFM52901.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] gi|307553898|gb|ADN46673.1| flagellar biosynthetic protein FlhB [Escherichia coli ABU 83972] gi|307626638|gb|ADN70942.1| flagellar biosynthesis protein FlhB [Escherichia coli UM146] gi|315290307|gb|EFU49683.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 153-1] gi|323186760|gb|EFZ72080.1| flagellar biosynthetic protein FlhB [Escherichia coli RN587/1] gi|323952382|gb|EGB48255.1| flagellar biosynthetic protein FlhB [Escherichia coli H252] gi|324013524|gb|EGB82743.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 60-1] Length = 382 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|71736663|ref|YP_275525.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484900|ref|ZP_05638941.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651607|ref|ZP_06482950.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aesculi str. 2250] gi|298487818|ref|ZP_07005858.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557216|gb|AAZ36427.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157543|gb|EFH98623.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330889044|gb|EGH21705.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. mori str. 301020] gi|330986505|gb|EGH84608.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011080|gb|EGH91136.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 378 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|239997097|ref|ZP_04717621.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126] Length = 374 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 198/356 (55%), Gaps = 23/356 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----IYSVTSDLH 63 KTE P+ KK+EDA +G SRE S ++++ + +F F G ++ +T + Sbjct: 6 EKTEDPTGKKLEDARKKGQLARSRELS--TTLVLIVSAFMFLFVGGWIAESVFKLTQRMF 63 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121 +L ++ + DI+H+ F + SA V P +LL+M+ + + + I + N Sbjct: 64 IL----SRDETYDITHM-FGAWGEAFSA---VGPTVLLYMVVAMIAGIYGSIALGGFNFT 115 Query: 122 --HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISLT-ENYFTMLDFI 177 KP ++S +G KR++ +N LV +KS K++ ++G I L E+ LD + Sbjct: 116 WEGAKPKGSKMSPIQGFKRMFGMNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLD-M 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P +I +HA ++ ++++ + + ++D+ + ++ ++KM+KQE+KDE K + Sbjct: 175 ELYPGNI-FHALDMLKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAE 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P++K R + + +MM+ +A +++TNPTH+++A++Y + APV+VAKG + Sbjct: 234 GDPMVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGVRAPVVVAKGAD 293 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +RKIA +++P+ P LAR++F ++ IP + AVAQ++ +Y K Sbjct: 294 ELAMHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349 >gi|83944181|ref|ZP_00956637.1| flagella-associated protein [Sulfitobacter sp. EE-36] gi|83955118|ref|ZP_00963774.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1] gi|83840447|gb|EAP79620.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1] gi|83845048|gb|EAP82929.1| flagella-associated protein [Sulfitobacter sp. EE-36] Length = 375 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 185/358 (51%), Gaps = 12/358 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN KT P+ KK++DA +G+ P S+E ++A L + Sbjct: 1 MAENSDSTEKTLEPTEKKLKDARKKGDVPSSKETGNMVVVVAMLGIAALVLPYQAPQIVV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-----LFMMFGIGSYLIQRI 115 L VLL + + V L + +++ +L LF+ IG+ +IQ Sbjct: 61 ALSVLLDHSPNLMVATGEPGVIRLGQIMSEFFYMIVWAVLPIFGVLFLGGAIGA-VIQGE 119 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172 V+ +KP ++S EG+KR++S N LV F KS VK++ +G + T +T Sbjct: 120 TVVAAERIKPKLSKLSPLEGLKRLFSANALVEFAKSIVKVLAIGGLAVWFTNEAVRRIWT 179 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 FI P + + K+LI + + + + DI W W K +MS+++IKDE Sbjct: 180 SSGFI---PEHLPGYLTAAAVKLLIAAAILLVPIAIADILWRRFDWRRKQRMSQKDIKDE 236 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K+S G+P I+ ++ R + + + A A +I+TNPTHY++AL+Y ++ APV + Sbjct: 237 HKESEGSPEIRQKRARRRRELSQQRTITAVPLADVILTNPTHYSIALKYDPAQDMAPVCI 296 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 AKG + +A+++R++A EH+IP+ E L R L+ ++ ++ IP ++ VA++I ++ Sbjct: 297 AKGADHLARRIREVAAEHDIPMIENKPLTRMLYDEIDVDQVIPVAHWEIVAEIISFVF 354 >gi|315286607|gb|EFU46040.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 110-3] Length = 400 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 20 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 75 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 76 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 135 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 136 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 195 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 196 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 255 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 256 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 315 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 316 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 368 >gi|330880588|gb|EGH14737.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 186/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ + Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + L M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKTLLMTKQEVRDEQKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300074126|gb|ADJ63525.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 391 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/360 (29%), Positives = 193/360 (53%), Gaps = 25/360 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-----FFFSPGIYSV 58 D+ +TE + K+IE A +G+ P SRE + CL+ L+ + FS + + Sbjct: 3 EDSDMERTEPATGKRIERAREQGDVPRSRE------LATCLVLLVGGSCVWMFSGPVVTS 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + V + S + + D ++ L++ L + VIP L + + + L + Sbjct: 57 LDRIMVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-- 176 N++ + P F +++ G ++S+N+LV K+ +K +LVGT+ +++ ++ Sbjct: 117 NVSSLAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGV 176 Query: 177 -----ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 A+ +L+ +F T ++ L+FIA VLD+ + + KL+M+++E+K Sbjct: 177 ESLKTAGAHAAQLLWISFIT----MVSALIFIA---VLDVPYQLWNYGRKLRMTREEVKQ 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K+S G+P IK + +++ R+ R +MM A +++TNPTHYA+AL+Y + + AP + Sbjct: 230 EHKESEGDPHIKGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + IA K+R++A EH +P+ E P LAR+L I IP Y AVA+++ ++ Sbjct: 290 VAKGSDEIAAKIRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQ 349 >gi|170694379|ref|ZP_02885533.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] gi|170140802|gb|EDT08976.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] Length = 401 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 105/351 (29%), Positives = 183/351 (52%), Gaps = 17/351 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE+ + ++++ A EG SRE S F+ +LA + ++ S S+ L +L + Sbjct: 8 EKTESATPRRLQKAREEGQIARSRELSTFA-LLAAGFFGVWGMSD---SIGEHLQAMLRA 63 Query: 69 ATQRKLEDISHIVFLLTH-LSLSASRLVIPGL--LLFMMFGIGSYLIQRIPV-----LNL 120 A H TH + + A GL LL ++ G+ + L+ Sbjct: 64 AFT-----FDHAGAFETHRMMIGAGAASREGLYALLPILAVTGAAALLAPMALGGWQLST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F+R++ G+ +I+SIN + S K ++VG I ++ +L + Sbjct: 119 KGLEPKFERLNPIAGLGKIFSINGPIQLAMSLAKTLVVGIIGGTAIWNRREEILALATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQ 349 >gi|289629017|ref|ZP_06461971.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866461|gb|EGH01170.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 378 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLLVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|295678071|ref|YP_003606595.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002] gi|295437914|gb|ADG17084.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002] Length = 411 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/361 (30%), Positives = 188/361 (52%), Gaps = 22/361 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+ + ++++ A EG SRE S F+ +LA Y G++ ++ Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFY-------GVWGMSG 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYLIQRIPV-- 117 ++ L + + L VF + + A GL L + G+ P+ Sbjct: 52 NIGEHLQNMVRASLMFNHASVFDTNRMLIGAGTAGREGLYALVPVLGVTGLAALLAPMAL 111 Query: 118 ----LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 L+ ++P F R++ EG R++SIN + S K ++VG I ++ + Sbjct: 112 GGWQLSAKGLEPKFNRLNPIEGFGRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQF 171 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSKQEIK 230 L + + L ++ + M + + + LD+ WSYH+ KL+M+K+E+K Sbjct: 172 LALATQPLNVALANSMHLIAVCCGMTVAGMFAVAALDVPYQLWSYHK---KLRMTKEEVK 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E ++S G+P IK + + R+ R +MM +A +++TNPTH+A+AL+Y E AP Sbjct: 229 REHRESEGDPHIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPK 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG NL+A ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y Sbjct: 289 VVAKGVNLVAARIREIATENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVY 348 Query: 351 H 351 Sbjct: 349 Q 349 >gi|289433957|ref|YP_003463829.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170201|emb|CBH26741.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 348 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/341 (29%), Positives = 182/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGGMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L S+ +F + ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPNLASIESYSLFYIMEFG----KVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ LV +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 KQIFSLFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|293604994|ref|ZP_06687390.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC 43553] gi|292816599|gb|EFF75684.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC 43553] Length = 384 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 110/348 (31%), Positives = 187/348 (53%), Gaps = 11/348 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLA 67 K+EA S +++E A EG SRE F +LA + +++ +Y ++ LH LA Sbjct: 8 EKSEAASPRRLEKAREEGQIARSRELGTFM-MLAAGVGVIWAGGGSLYRGLSGVLHNGLA 66 Query: 68 SATQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 QR + D + V H L+ L + G+L + + S L+ I V++ + Sbjct: 67 F-DQRIVTDPGVMVEQAVIGFGHALLAL--LPVFGVLAVVAV-LSSVLLGGI-VISGKPL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + +F ++SL G+KR++S +V +K+ K +LVG + + + ML + P + Sbjct: 122 QANFSKLSLFAGLKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLGLMHVAPSA 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V +I+ + + +LD+ W KL+MSK++++ E K+S G+P +K Sbjct: 182 ALIKALSLVAICCALIVASLLVIVLLDVPWQIFSHLKKLRMSKEDVRQEHKESEGDPHVK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R R +MM RA +++TNPTHYA+AL+Y + ++ AP ++AKG LIA K+ Sbjct: 242 ARIRQQQRQAARRRMMSEVPRADVVVTNPTHYAVALKYDEDKSGAPRVIAKGTGLIAAKI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 R++A E+ IP E P LAR+L + V + IP Y AVA+++ ++ Sbjct: 302 RELAAENRIPTLEAPPLARALHQHVELGKEIPAELYTAVAEVLAWVFQ 349 >gi|262273550|ref|ZP_06051364.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] gi|262222528|gb|EEY73839.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] Length = 375 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 30/365 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ A D KTE PS +KI A EGN P SRE L ++++ LL + + +S Sbjct: 1 MSDSSAQD-KTERPSEQKIRKAREEGNLPRSRE--LVTALMMVASALL------LSAFSS 51 Query: 61 DLHVLLASATQRKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 +H + S ++ L +F LL ++ A++ + P L M+ IG+ L++ Sbjct: 52 AIHHTIVSVSEMTLNIDKDTIFSPDKMGELLWQSAILATQALAPLFALIMLVSIGANLLR 111 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 ++ + P +++ GIKRI+S N+LV +KS +K+ +G + L +Y Sbjct: 112 GGWNISTKAMMPKLSKLNPLSGIKRIFSANSLVELIKSILKVTFIGGAL-YWLINHY--- 167 Query: 174 LDFISANPHSILYHA-------FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 L+ I A H+ L A +T V ++LLFIA VL++ +S +++ KLKM+K Sbjct: 168 LNEIIALQHTRLSAAIPAFLDLLWTGLFVYGLVLLFIA---VLEMPYSSYEYIKKLKMTK 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K + G P IK R + + R + + A +IITNPTHYA+AL+Y ++ Sbjct: 225 QEVKEEHKNTEGRPEIKARIRQLQRQMSQRAFAKTVPTADVIITNPTHYAVALKYDLSKA 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP ++AKG + A ++R+IA +H +P+ E P LAR+++ IP Y AVA ++ Sbjct: 285 NAPFVIAKGVDQAALQIRQIAQQHGLPVVEVPPLARAVYYSTNEWQEIPAQLYVAVAHVL 344 Query: 347 YKIYH 351 ++ Sbjct: 345 NYVFQ 349 >gi|52080241|ref|YP_079032.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC 14580] gi|52785618|ref|YP_091447.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC 14580] gi|319645980|ref|ZP_08000210.1| FlhB protein [Bacillus sp. BT1B_CT2] gi|52003452|gb|AAU23394.1| flagella-associated protein [Bacillus licheniformis ATCC 14580] gi|52348120|gb|AAU40754.1| FlhB [Bacillus licheniformis ATCC 14580] gi|317391730|gb|EFV72527.1| FlhB protein [Bacillus sp. BT1B_CT2] Length = 359 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 108/349 (30%), Positives = 193/349 (55%), Gaps = 9/349 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK ++ +G +++ A + +++ +++L F F I D + L Sbjct: 13 EKTEKATPKKRRESRKKGQ--VAKSADVNTAVTLLIVFLSFLF---IGPFMRDRLLGLIE 67 Query: 69 ATQRKL----EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++L +++I L + L + ++ P LL ++ G+ S +Q + +K Sbjct: 68 KYYKELITMKVSVANIPGLFQSVVLESGLIMAPLLLTAVVSGVLSNYMQVGFLFAPEAIK 127 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P K++ G KRIYSI +V +KS +KI++VG + L N+ +L + + Sbjct: 128 PDLKKLDPLNGFKRIYSIRAIVELLKSILKIVIVGGVTFAVLWLNFDKILRIPALSAGEA 187 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L + + + + + + L VLD + + ++MSKQ+IKDE K++ G+P+IK+ Sbjct: 188 LSYVGWLTFLMGVSAAVALIFLAVLDYLYQKFDYEKNIRMSKQDIKDEYKKTEGDPLIKS 247 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + K + +MM+ +A +IITNPTHYA+AL+Y + + DAP ++AKG +L+A K+R Sbjct: 248 KIKQKQKEMAMRRMMQEVPKADVIITNPTHYAVALKYDENKMDAPFIIAKGVDLMALKIR 307 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA EH++ E LAR+L+ QV I+ A+P F+KAVA+++ +Y K Sbjct: 308 QIAKEHDVMTVENRPLARALYDQVEIDQAVPEEFFKAVAEILAYVYKTK 356 >gi|296534146|ref|ZP_06896642.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] gi|296265522|gb|EFH11651.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] Length = 353 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/360 (29%), Positives = 187/360 (51%), Gaps = 23/360 (6%) Query: 1 MSENDAPDNKTEA----PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--G 54 M+E + P +E PS K+ A G P++REA +S+ + L +F P G Sbjct: 1 MAEKEGPGGDSEEKELDPSEAKLRKARESGEVPLAREAVQLASLCGG-AFALSWFGPALG 59 Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 + V + S R ++S + L+L + L G ++ L Q Sbjct: 60 HHMVEQGRSLFALSHEARWQLELSEMAVRAAPLALGVAGLAATGAVVV-------TLAQT 112 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYF 171 +++ + P+ ++S G+KR++ LV F ++ +K++ G ++ +TE Sbjct: 113 RLLVSAKPLAPNPMKLSPLRGLKRMFGPQALVEFGRAMLKVVACGLAMWWVSDGITERLP 172 Query: 172 TMLDFISANPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 L A P L A + ++L LL + ++D+GW + K++MS+QE+K Sbjct: 173 QTL----ALPLEELGGLAAELIERLLRGALLAFTVVALVDLGWVRLRHMQKMRMSRQEMK 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE+K+S G+P I+ R++ IA R R + M +AT+I+TNPTHYA+AL Y + + AP Sbjct: 229 DEMKESEGDPHIRGRRRQIALRRSRSRAMAEVPKATVIVTNPTHYAVALSYRRGIDAAPR 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VA+G + +A ++R+ A +H +P+ P LAR+L++ V + IP ++AVA+LI ++ Sbjct: 289 VVARGVDSMAARIRREAEKHGVPVLPNPPLARALYR-VEEGAQIPAEHFEAVAELIALVW 347 >gi|59712446|ref|YP_205222.1| flagellar biosynthesis protein FlhB [Vibrio fischeri ES114] gi|59480547|gb|AAW86334.1| flagellar export pore protein FlhB [Vibrio fischeri ES114] Length = 376 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 197/361 (54%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 M+E+D + +TE +SK+++ A ++G S+E AS+ S+L C L +F + Sbjct: 1 MAESDGQE-RTEDATSKRLQQAKDKGQVARSKELASV--SVLVCGAVALMWFGEDVARAL 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-LLLFMMFGIGSYLIQRIPVL 118 + S ++ ++ D + ++ ++ ++ LV P L+L +F + + Sbjct: 58 FSVMERFFSISREEIYDTNKLLEIVGGALIA---LVFPVFLILITLFVAALAGAAGLGGI 114 Query: 119 NLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173 + + P F +++ GIKR++ + + V +KS +K+ LVG + + E+ F + Sbjct: 115 SFSSEAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQL 174 Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 LD AN ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE Sbjct: 175 SLDTYPAN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K++ G P +K R + + R + +MM A +++TNP HY++ALRY Q+++ AP++V Sbjct: 231 YKETEGKPEVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ Sbjct: 291 AKGVDHVAMKIREIAREHNIDILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQM 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|157161351|ref|YP_001458669.1| flagellar biosynthesis protein FlhB [Escherichia coli HS] gi|170019775|ref|YP_001724729.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739] gi|188494102|ref|ZP_03001372.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] gi|193069902|ref|ZP_03050851.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019] gi|194439073|ref|ZP_03071156.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1] gi|218695446|ref|YP_002403113.1| flagellar biosynthesis protein FlhB [Escherichia coli 55989] gi|253773163|ref|YP_003035994.1| flagellar biosynthesis protein FlhB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161940|ref|YP_003045048.1| flagellar biosynthesis protein FlhB [Escherichia coli B str. REL606] gi|300822346|ref|ZP_07102487.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7] gi|300928913|ref|ZP_07144417.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1] gi|301645603|ref|ZP_07245532.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|307138545|ref|ZP_07497901.1| flagellar biosynthesis protein FlhB [Escherichia coli H736] gi|331642498|ref|ZP_08343633.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] gi|157067031|gb|ABV06286.1| flagellar biosynthetic protein FlhB [Escherichia coli HS] gi|169754703|gb|ACA77402.1| flagellar biosynthetic protein FlhB [Escherichia coli ATCC 8739] gi|188489301|gb|EDU64404.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] gi|192956802|gb|EDV87256.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019] gi|194422032|gb|EDX38036.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1] gi|218352178|emb|CAU97917.1| flagellar export pore protein [Escherichia coli 55989] gi|242377601|emb|CAQ32357.1| flagellar biosynthesis protein FlhB, subunit of Flagellar Export Apparatus and Flagellum [Escherichia coli BL21(DE3)] gi|253324207|gb|ACT28809.1| flagellar biosynthetic protein FlhB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973841|gb|ACT39512.1| flagellar biosynthesis protein B [Escherichia coli B str. REL606] gi|253978035|gb|ACT43705.1| flagellar biosynthesis protein B [Escherichia coli BL21(DE3)] gi|300463067|gb|EFK26560.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1] gi|300525229|gb|EFK46298.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7] gi|301076135|gb|EFK90941.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|315617894|gb|EFU98492.1| flagellar biosynthetic protein FlhB [Escherichia coli 3431] gi|323937138|gb|EGB33418.1| flagellar biosynthetic protein FlhB [Escherichia coli E1520] gi|323961935|gb|EGB57534.1| flagellar biosynthetic protein FlhB [Escherichia coli H489] gi|323972611|gb|EGB67814.1| flagellar biosynthetic protein FlhB [Escherichia coli TA007] gi|331039296|gb|EGI11516.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] gi|332089613|gb|EGI94715.1| flagellar biosynthetic protein FlhB [Shigella boydii 5216-82] gi|332343606|gb|AEE56940.1| flagellar biosynthetic protein FlhB [Escherichia coli UMNK88] Length = 382 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|309702103|emb|CBJ01418.1| flagellar biosynthesis protein FlhB [Escherichia coli ETEC H10407] Length = 382 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 DMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|206889713|ref|YP_002249863.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741651|gb|ACI20708.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 353 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 100/349 (28%), Positives = 189/349 (54%), Gaps = 9/349 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 +TE + ++ E A +G P SRE L I +I+L F FS G + ++ H+ A Sbjct: 6 QERTEQATPRRREKARQKGEVPRSRE--LTGIIGTWMIFLYFVFS-GTFLISIMQHMKEA 62 Query: 68 SATQRKLEDISHIVFLLTHLSLS---ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + E ++ + + + L I G+LLF + + + IQ + + Sbjct: 63 FTRVKNPEFVASAIITIIKDEIKWYFIQFLPIGGVLLFGVLLV--HFIQTGFLFTGATLV 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P ++S +GIK+++S+N L +K +K++ +G +I L ++ + I + +I Sbjct: 121 PDVSKISPLKGIKKLFSLNALFETIKGILKLVALGIVIYFVLKKDVNILPLLIDMDVKAI 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 +F + ++++ L+ + +D + Q+ L+M+KQEIK+E K++ G+P+++ Sbjct: 181 AGISFQKIYQLILACLIMLTVFAGIDFAYQRWQYERNLRMTKQEIKEEFKETEGSPMVRA 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R +S+ R R +MM+ +A ++ITNP H A+ ++Y +AP +VAKG NL+A++++ Sbjct: 241 RIRSLQREMARKRMMQEVPKADVVITNPLHLAVCIKYDSKNMNAPAVVAKGANLLAERIK 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA +PI+E LAR+L++ +P+ IP YKAVA ++ +Y K Sbjct: 301 EIARASGVPIYENKPLARALYR-IPLGEEIPEALYKAVATILATVYKIK 348 >gi|308048765|ref|YP_003912331.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] gi|307630955|gb|ADN75257.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] Length = 389 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 189/360 (52%), Gaps = 15/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+END+ +TE + ++ E A +G P S+E + ++A +L + + Sbjct: 1 MAENDSSQERTEEATPRRREQAREKGQVPRSKELGTAAVLVAAAAGMLMMGGQIGEAMLT 60 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V L T+ ++ D+ I L + + S L++P L ++ I +L I + Sbjct: 61 VAKSQFEL----TRAEVFDLGEISELFSRI---LSELMVPVLGFVLVLFIAGFL-GNIGL 112 Query: 118 LNLN----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 ++ P ++S G KR++ + LV +KS K ++ + L+ N+ + Sbjct: 113 GGMSFSWQAAAPKASKMSPLAGFKRMFGLQALVELVKSIAKFAVIALVAWALLSVNFDQI 172 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L S NP + A + K+ +++ + + ++D + +LKM+KQE+KDE Sbjct: 173 LQLSSGNPEGAVRDALALLLKLFVLLCSSLLIIVIIDAPYQLWNHNKQLKMTKQEVKDEY 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ+ G P +K + + + R + +MM +A +++ NPTHY++ALRY ++ N+AP++VA Sbjct: 233 KQTEGKPEVKGKIRQLQREMAQRRMMAEVPKADVVVVNPTHYSVALRYDKSINNAPLVVA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + IA K+R+IA EH +P+ P+LAR+++ ++S IP + AVAQ++ +Y K Sbjct: 293 KGTDEIALKIREIAREHEVPVVSSPALARAVYYSTKLDSPIPEGLFTAVAQILAYVYQLK 352 >gi|320198575|gb|EFW73175.1| Flagellar biosynthesis protein FlhB [Escherichia coli EC4100B] Length = 382 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLRFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|94264043|ref|ZP_01287843.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] gi|94266371|ref|ZP_01290070.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] gi|93453023|gb|EAT03511.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] gi|93455554|gb|EAT05741.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] Length = 356 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 185/360 (51%), Gaps = 15/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT- 59 M+E + KTE P+ +++ +A N+G+ S E + +LA +I L F VT Sbjct: 1 MAEEQSGQEKTEKPTERRLLEARNKGDVAKSMEVPSAAVLLAGVIVLYFTGEYMFNRVTG 60 Query: 60 ------SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 S+LH + SA + +I+ V LL + L P +L + + + +Q Sbjct: 61 MMQFYLSNLHDIEISAAS--MPNITRQVMLLIYTVL------WPLMLTVFLAALAANYLQ 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 + + P +++ +G+ R++S L N KS K LVG I + + Sbjct: 113 VGFLFTAEKITPKLEKIDPLKGLGRLFSKQTLNNAFKSIAKFSLVGYIAYSEIIRAMPEI 172 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L P+ IL T + + + + ++D + Q+ K+KM+KQ++KDE Sbjct: 173 LPLADKAPYPILVFMVETAFWIFLKCAVLFILIALIDYAFQRWQFMEKMKMTKQDMKDES 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQS G+P +K R +SI + +MM +A +++TNPTH A+A++Y AP ++A Sbjct: 233 KQSEGDPHVKGRIRSIQMEMAKKRMMAEVPKADVVVTNPTHLAVAIKYDALTMKAPEVLA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG ++A K++++A EH +P+ E+ LA++L++ V I +IP ++AVA+++ +Y+ K Sbjct: 293 KGAGVVANKIKEVAREHQVPVVEDKPLAQALYQNVEIGGSIPENLFQAVAEVLAYVYNLK 352 >gi|34558296|ref|NP_908111.1| flagellar biosynthesis protein FlhB [Wolinella succinogenes DSM 1740] gi|34484015|emb|CAE11011.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLHB [Wolinella succinogenes] Length = 352 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 113/363 (31%), Positives = 187/363 (51%), Gaps = 33/363 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI--YLLF-FFSPGIYSVTSDLHV 64 + KTE PS KKIE A +GN P S E +F +L LI Y+LF ++ G V + Sbjct: 5 EEKTEEPSGKKIEKAREDGNVPKSPEVVVFFGLLVGLILIYVLFTYWVDGTGRVFHQVTP 64 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 RK + L ++L LVIP + M+ G+ + Q +L+ ++ Sbjct: 65 YFHEEIGRK-----DAISLAISIALEYFLLVIPLFIALMIIGVAGNVSQFGFLLSSKAIE 119 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE----NYFTMLDFISAN 180 P F +++ G+K ++S+ L++ GT++T+ + ++ L FI Sbjct: 120 PKFSKLNPITGLKNLFSLKKLLD-----------GTLLTVKVLTAFGIGFWVFLSFIGEL 168 Query: 181 PHSILYHAFFTVR-------KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ F +R + ++LLF + +D +Q++ L+M+KQE+KDE Sbjct: 169 TTVSLFPLFDQMRWFKDKALILAAILLLFFFVMASIDFAIKRYQYFKSLRMTKQEVKDEY 228 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ GNP IK + + + +MM+ A ++ITNPTHYA+ALRY + AP ++A Sbjct: 229 KQMEGNPEIKRKIRQLMMQAAMKRMMQQLPTADVVITNPTHYAVALRYNTQKERAPRVIA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIY 350 KG + +A ++++IA EH I I E +LAR L+K ++ IP ++AVA++ +YK+ Sbjct: 289 KGVDFMAIRIKEIAREHEIQIVENKTLARELYKNADVDKEIPETLFQAVAEVLAYVYKLN 348 Query: 351 HKK 353 KK Sbjct: 349 KKK 351 >gi|320194407|gb|EFW69038.1| Flagellar biosynthesis protein FlhB [Escherichia coli WV_060327] Length = 382 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ ++ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-ALARPLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|291484192|dbj|BAI85267.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. natto BEST195] Length = 360 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 184/348 (52%), Gaps = 7/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 13 EKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYTE 72 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P + Sbjct: 73 SLTMKLSE-SNVHTLFVSLLKDMGIILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKLE 131 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L Sbjct: 132 KLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALS-- 189 Query: 189 FFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + L M L L +L D + + +KMSKQ+IKDE K+S G+PIIK++ Sbjct: 190 -FVSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSK 248 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RK Sbjct: 249 IKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRK 308 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 309 IAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|191168095|ref|ZP_03029894.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A] gi|309796010|ref|ZP_07690423.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7] gi|190901893|gb|EDV61643.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A] gi|308120460|gb|EFO57722.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7] Length = 382 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|259908202|ref|YP_002648558.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96] gi|224963824|emb|CAX55326.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96] gi|283478130|emb|CAY74046.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163] Length = 383 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 191/351 (54%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ + KTE+P++ ++E A EG P SRE +S+L + L + G + + + Sbjct: 3 QDSDEEKTESPTAHRLEKAREEGQIPRSRE---LTSLLMLMTGLSILWVGGEW-MGRKMG 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LLA + D S ++ L+ ++ L A V+P + ++ I + ++ V++ Sbjct: 59 ALLADGLVFNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ +++S+ + +K+ +K LVG + + + ++ ML ++ + Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSVQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPMVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++ + IP+ E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQ 349 >gi|254491439|ref|ZP_05104618.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxidans DMS010] gi|224462917|gb|EEF79187.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxydans DMS010] Length = 377 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 113/370 (30%), Positives = 194/370 (52%), Gaps = 33/370 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E A + KTE P++K++++A N+G P SRE + ++A + LLF I S+ Sbjct: 1 MAEQSAQE-KTEEPTAKRLDEARNKGQVPRSRELTTVMVLIASAVALLFMGKNIIASMAQ 59 Query: 61 DLHVLLASATQRKLED----ISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQR 114 ++ S T+++L D I H ++ + ++ S V L IG + Sbjct: 60 VMNKSF-SFTRKELFDPMAMIHHFIYTIETIAFDLSMFLGVTVLAALAAPALIGGW---- 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI---SLTENYF 171 + + P +R+ +G+KRI+ L+ K+ K ILVG I T S+ + Sbjct: 115 --NFSAQAMAPKGERMDPLKGLKRIFGPQGLIELAKALGKFILVGVISTAILWSIRDQLL 172 Query: 172 TM----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 T+ ++ A+ + F + LI+I L + W++++ +L+M+KQ Sbjct: 173 TLGRQEVNVAMADLGYLTMWVFLAICASLILIALIDVPFQI----WNHNR---QLRMTKQ 225 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE+K++ GNP +K R + + + +MM+ A ++ITNPTHYA+ALRY QT+ Sbjct: 226 EVKDEMKETDGNPEVKGRIRRMQVELSQQRMMQDIPSADVVITNPTHYAVALRYDQTKTG 285 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI- 346 APV+VAKG + I++++R +A +++PI P L R+++ I IP Y AVAQ++ Sbjct: 286 APVVVAKGADFISQQIRLVAEHNDVPILSAPPLTRAVYYSTEIGDEIPSGLYIAVAQVLA 345 Query: 347 ----YKIYHK 352 + YHK Sbjct: 346 FVFQLRRYHK 355 >gi|120554898|ref|YP_959249.1| flagellar biosynthesis protein FlhB [Marinobacter aquaeolei VT8] gi|120324747|gb|ABM19062.1| flagellar biosynthetic protein FlhB [Marinobacter aquaeolei VT8] Length = 378 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 9/354 (2%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSV 58 END KTE P+ +++E A EG S+E + + +LA LL F I S+ Sbjct: 3 EENDNSQEKTEEPTPRRLEKAKEEGQTARSKELATMAVLLAGAGGLLIFGTSLGASIESI 62 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-GSYLIQRIPV 117 D V+ SA + D H+ L + A+ + P L++ ++ I GS I + + Sbjct: 63 MRDSFVIERSA----IFDTRHMSVQLILAAKEAAWALSPILVMLLIAAIAGSIGIGGL-L 117 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P F R+ +G+ R++S+ +L+ +K+ K+ LV + + L +L Sbjct: 118 FSAKAIAPKFNRMDPIKGLGRMFSMRSLIELVKAIAKVGLVMAVAILILNLRTEDLLAIA 177 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + H +T+ + + +D+ + + KL+M+KQE+KDE K + Sbjct: 178 EEPTVPAMEHVLWTLGWSFFFLSCATIAIAAIDVPFQIYDHQKKLRMTKQEVKDEYKDTE 237 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P +K + + + R + +MM+ +A ++ITNPTHYA+AL+Y Q APV+VAKG + Sbjct: 238 GKPEVKGKIRQLQREMAQRRMMQDVPKADVVITNPTHYAVALKYDQKTMGAPVVVAKGAD 297 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A K+ +IA E+ + + P L R+++ I IP Y A+AQ++ ++ Sbjct: 298 EVAFKIMEIARENKVEVLRTPPLTRAVYHNTDIGEEIPDGLYMAIAQVLAYVFQ 351 >gi|188592105|ref|YP_001796703.1| flagellar biosynthesis protein flhb [Cupriavidus taiwanensis LMG 19424] gi|170938479|emb|CAP63466.1| FlhB: Flagellar biosynthetic protein. flhB/hrpN/yscU/spaS family [Cupriavidus taiwanensis LMG 19424] Length = 380 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 180/358 (50%), Gaps = 27/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S +++E A EG SRE + F ++A + G++++ L L Sbjct: 8 EKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVT--------GLWTLGGHLGRSLNQ 59 Query: 69 ATQRKLEDISHIVF----LLTHLSLSASRLVIPGLLLFMMFGI---------GSYLIQRI 115 Q L F +L+ +L ++ L L ++FG+ G + Sbjct: 60 VMQGALRFEPATAFDPARMLSRFALMVWDSLLAFLPLLLLFGVAALAAPLLLGGW----- 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + P F R+S G+ R++S ++LV +K+ K +LVG + L + Sbjct: 115 -VFSGKSFAPQFSRLSPIAGLGRMFSAHSLVELLKAVAKSLLVGAVGAWVLWRRLPEAIA 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 ++A L H V +++ L + + +D+ W Y +++ KL+M+K+E+K E K+ Sbjct: 174 LMNAPVQEALLHMVDLVMFCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKE 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P IKNR + R+ R +MM +A +++TNPTH+A+ALRY + AP +VAKG Sbjct: 234 SEGDPHIKNRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R +A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 294 TGEVAARIRALAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351 >gi|293446267|ref|ZP_06662689.1| flagellar biosynthetic protein FlhB [Escherichia coli B088] gi|291323097|gb|EFE62525.1| flagellar biosynthetic protein FlhB [Escherichia coli B088] Length = 396 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 16 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 71 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 72 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 131 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 132 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 191 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 192 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 251 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 252 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 311 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 312 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 364 >gi|149182522|ref|ZP_01860995.1| flagellar biosynthesis protein B [Bacillus sp. SG-1] gi|148849782|gb|EDL63959.1| flagellar biosynthesis protein B [Bacillus sp. SG-1] Length = 360 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 115/351 (32%), Positives = 194/351 (55%), Gaps = 13/351 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+E + KK +D+ +G S++ + +LA ++L F S I V DL + S Sbjct: 14 EKSEKATPKKRQDSRKKGQTAKSQDVNTAIILLAVFLFLTFSASY-IGDVIFDLFRI--S 70 Query: 69 ATQRKLEDISHIVFLLTHLSL--SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + D++ F+L + + + L+ P +L+ ++ G+ S IQ + ++P Sbjct: 71 FQDYMMMDLTQDSFMLIVMEVLQQVAILLGPIMLVALLAGLFSNYIQVGVMFTAEPLQPK 130 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--FISANPHSI 184 +++ +G KRI+S+ +V +KS +KI VG I + L N +L F SA S+ Sbjct: 131 LEKIDPIKGAKRIFSLRAIVELLKSILKIGFVGAITFVILWMNIDEVLGLSFKSAY-DSL 189 Query: 185 LYHAFFTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 A TV+ + + LLF L+V D + + + ++MSKQ+IKDE K + G+P+I Sbjct: 190 AAMASLTVQMGIAASLALLF---LSVFDYLYQKYDFEKNIRMSKQDIKDEHKNAEGDPLI 246 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++ K R +MM+ A ++ITNPTHYA+AL+Y + ++DAP ++AKG + +A+K Sbjct: 247 KSKIKQRQREMAMRRMMQEVPEADVVITNPTHYAIALKYDENKSDAPYVIAKGVDYMAQK 306 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IA EH+I + E LARSL+ I IP F+KAVA+++ +Y K Sbjct: 307 IKYIAGEHDIIMVENRPLARSLYDSAEIGDTIPEEFFKAVAEILAYVYRMK 357 >gi|332756021|gb|EGJ86374.1| flagellar biosynthetic protein FlhB [Shigella flexneri 4343-70] gi|333003254|gb|EGK22800.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-218] Length = 397 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQ G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQGEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|315296540|gb|EFU55837.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 16-3] Length = 382 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ ++ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-ALARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|16129832|ref|NP_416394.1| flagellin export apparatus, substrate specificity protein [Escherichia coli str. K-12 substr. MG1655] gi|89108720|ref|AP_002500.1| predicted flagellar export pore protein [Escherichia coli str. K-12 substr. W3110] gi|157156351|ref|YP_001463185.1| flagellar biosynthesis protein FlhB [Escherichia coli E24377A] gi|170081536|ref|YP_001730856.1| flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|193065459|ref|ZP_03046528.1| flagellar biosynthetic protein FlhB [Escherichia coli E22] gi|194429326|ref|ZP_03061852.1| flagellar biosynthetic protein FlhB [Escherichia coli B171] gi|209919306|ref|YP_002293390.1| flagellar biosynthesis protein FlhB [Escherichia coli SE11] gi|218554468|ref|YP_002387381.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI1] gi|238901095|ref|YP_002926891.1| putative flagellar export pore protein [Escherichia coli BW2952] gi|256017916|ref|ZP_05431781.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] gi|260844290|ref|YP_003222068.1| putative flagellar export pore protein FlhB [Escherichia coli O103:H2 str. 12009] gi|260855820|ref|YP_003229711.1| putative flagellar export pore protein FlhB [Escherichia coli O26:H11 str. 11368] gi|260868478|ref|YP_003234880.1| putative flagellar export pore protein FlhB [Escherichia coli O111:H- str. 11128] gi|293410191|ref|ZP_06653767.1| flagellar biosynthetic protein FlhB [Escherichia coli B354] gi|293415195|ref|ZP_06657838.1| flagellar biosynthetic protein FlhB [Escherichia coli B185] gi|300819864|ref|ZP_07100049.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|300924972|ref|ZP_07140897.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1] gi|300951503|ref|ZP_07165338.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1] gi|300956607|ref|ZP_07168886.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1] gi|301029330|ref|ZP_07192427.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1] gi|301327670|ref|ZP_07220877.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1] gi|307314208|ref|ZP_07593818.1| flagellar biosynthetic protein FlhB [Escherichia coli W] gi|331668576|ref|ZP_08369424.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|331673405|ref|ZP_08374173.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] gi|331677765|ref|ZP_08378440.1| flagellar biosynthetic protein FlhB [Escherichia coli H591] gi|332278948|ref|ZP_08391361.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] gi|2494574|sp|P76299|FLHB_ECOLI RecName: Full=Flagellar biosynthetic protein flhB gi|1736533|dbj|BAA15696.1| predicted flagellar export pore protein [Escherichia coli str. K12 substr. W3110] gi|1788188|gb|AAC74950.1| flagellin export apparatus, substrate specificity protein [Escherichia coli str. K-12 substr. MG1655] gi|157078381|gb|ABV18089.1| flagellar biosynthetic protein FlhB [Escherichia coli E24377A] gi|169889371|gb|ACB03078.1| predicted flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|192926864|gb|EDV81489.1| flagellar biosynthetic protein FlhB [Escherichia coli E22] gi|194412633|gb|EDX28929.1| flagellar biosynthetic protein FlhB [Escherichia coli B171] gi|209912565|dbj|BAG77639.1| flagellar protein FlhB [Escherichia coli SE11] gi|218361236|emb|CAQ98820.1| flagellar export pore protein [Escherichia coli IAI1] gi|222033628|emb|CAP76369.1| flagellar biosynthetic protein flhB [Escherichia coli LF82] gi|238862415|gb|ACR64413.1| predicted flagellar export pore protein [Escherichia coli BW2952] gi|257754469|dbj|BAI25971.1| predicted flagellar export pore protein FlhB [Escherichia coli O26:H11 str. 11368] gi|257759437|dbj|BAI30934.1| predicted flagellar export pore protein FlhB [Escherichia coli O103:H2 str. 12009] gi|257764834|dbj|BAI36329.1| predicted flagellar export pore protein FlhB [Escherichia coli O111:H- str. 11128] gi|260448997|gb|ACX39419.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1] gi|284921799|emb|CBG34872.1| flagellar biosynthesis protein FlhB [Escherichia coli 042] gi|291432843|gb|EFF05822.1| flagellar biosynthetic protein FlhB [Escherichia coli B185] gi|291470659|gb|EFF13143.1| flagellar biosynthetic protein FlhB [Escherichia coli B354] gi|299877756|gb|EFI85967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1] gi|300316589|gb|EFJ66373.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1] gi|300418847|gb|EFK02158.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1] gi|300449253|gb|EFK12873.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1] gi|300527561|gb|EFK48623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|300845765|gb|EFK73525.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1] gi|306906177|gb|EFN36695.1| flagellar biosynthetic protein FlhB [Escherichia coli W] gi|312946479|gb|ADR27306.1| flagellar biosynthesis protein FlhB [Escherichia coli O83:H1 str. NRG 857C] gi|315061186|gb|ADT75513.1| predicted flagellar export pore protein [Escherichia coli W] gi|315136523|dbj|BAJ43682.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1] gi|323180678|gb|EFZ66223.1| flagellar biosynthetic protein FlhB [Escherichia coli 1180] gi|323186344|gb|EFZ71694.1| flagellar biosynthetic protein FlhB [Escherichia coli 1357] gi|323378237|gb|ADX50505.1| flagellar biosynthetic protein FlhB [Escherichia coli KO11] gi|323940452|gb|EGB36643.1| flagellar biosynthetic protein FlhB [Escherichia coli E482] gi|323948234|gb|EGB44222.1| flagellar biosynthetic protein FlhB [Escherichia coli H120] gi|324017961|gb|EGB87180.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 117-3] gi|324118940|gb|EGC12829.1| flagellar biosynthetic protein FlhB [Escherichia coli E1167] gi|331063770|gb|EGI35681.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|331069603|gb|EGI40990.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] gi|331074225|gb|EGI45545.1| flagellar biosynthetic protein FlhB [Escherichia coli H591] gi|332101300|gb|EGJ04646.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] Length = 382 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|3169254|gb|AAC17834.1| flagellar protein FlhB [Escherichia coli] Length = 382 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 197/367 (53%), Gaps = 35/367 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 56 ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 +S+ +D +++L E + ++ L++ + L A L+ P +L ++F Sbjct: 59 MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFS 116 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 S ++P F +++ GIKR++S +K+ +K ILVG++ L Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFL 163 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 ++ M+ ++ +P + + +A V ++++L + + D+ + KL+MS+ Sbjct: 164 WHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSR 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQS G+P +K R + + R+R R +MM +A +I+ NPTHY++AL+Y + + Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMQRARARRRMMADVPKADVIVNNPTHYSVALQYDENKM 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENNVPTLEAPRLARALYRHAEIGQQIPGQLYAAVAEVL 343 Query: 347 YKIYHKK 353 ++ K Sbjct: 344 AWVWQLK 350 >gi|332140595|ref|YP_004426333.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550617|gb|AEA97335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 374 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 192/356 (53%), Gaps = 23/356 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHVL 65 KTE P+ KK++DA +G SRE S ++ + LF + + ++ +T + +L Sbjct: 6 EKTEDPTGKKLDDARKKGQLARSRELSTTLVLIVSAVMFLFVGGWIAESVFKLTRRMFIL 65 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN---- 121 ++ + DI+H+ F + SA V P +LL+M+ + + + I + N Sbjct: 66 ----SRDETYDITHM-FGAWGEAFSA---VGPAVLLYMVVAMIAGIYGSIALGGFNFTWE 117 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISL---TENYFTMLDFI 177 KP ++S +G KR++ N LV +KS K++ ++G I L E ++ Sbjct: 118 GAKPKGSKMSPIQGFKRMFGTNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMELY 177 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 N L+HA ++ ++++ + + ++D+ + ++ ++KM+KQE+KDE K + Sbjct: 178 PGN----LFHAMDILKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAE 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P++K R + + +MM+ +A +++TNPTH+++A++Y + APV+VAKG + Sbjct: 234 GDPMVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGIRAPVVVAKGAD 293 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +RKIA +++P+ P LAR++F ++ IP + AVAQ++ +Y K Sbjct: 294 ELAMHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349 >gi|312969924|ref|ZP_07784107.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70] gi|310338209|gb|EFQ03298.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70] Length = 382 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|300694355|ref|YP_003750328.1| flagellar export pore protein [Ralstonia solanacearum PSI07] gi|299076392|emb|CBJ35708.1| flagellar export pore protein [Ralstonia solanacearum PSI07] Length = 389 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 107/364 (29%), Positives = 183/364 (50%), Gaps = 29/364 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE+ S +++E A EG+ P SRE F LL + G++ + Sbjct: 1 MSE-DSDLEKTESASPRRLEQAREEGDVPQSRELVSF--------VLLAVAAGGLWVMGE 51 Query: 61 DLHVLLASATQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQR 114 + +S R LE D + ++ L V+ GL+L ++ S L Sbjct: 52 SIVRTASSFLARCLEFHRYDYTRAQAQWQYVGAQFGPLAMVLAGLMLMLVLASLSPLALT 111 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 ++ + P R+ G+KR++S+ L+ + K+ LVG + ++ +L Sbjct: 112 RGAISFKPLTPDISRLIGLHGLKRMFSVQGLLELPRLLAKLALVGGV-------GWWLIL 164 Query: 175 DFISAN---PHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQ 227 + A P L V + L +A + +L D+ + Q+ K +M+K+ Sbjct: 165 HYRDAFVELPRGDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKE 224 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E++ E ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E Sbjct: 225 EVRKEHRESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGG 284 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP ++AKG +L+A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ Sbjct: 285 APRVLAKGADLVAAKIRELGAEHRIPVLEAPPLARALYRHTEIGHQIPAALYAAVAEVLA 344 Query: 348 KIYH 351 +Y Sbjct: 345 YVYQ 348 >gi|291283062|ref|YP_003499880.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str. CB9615] gi|209767298|gb|ACI81961.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|209767304|gb|ACI81964.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|290762935|gb|ADD56896.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str. CB9615] gi|320641734|gb|EFX11122.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. G5101] gi|320647094|gb|EFX15927.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str. 493-89] gi|320652377|gb|EFX20675.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str. H 2687] gi|320657978|gb|EFX25740.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658551|gb|EFX26245.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str. USDA 5905] gi|320668449|gb|EFX35276.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. LSU-61] Length = 382 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|167587841|ref|ZP_02380229.1| flagellar biosynthesis protein FlhB [Burkholderia ubonensis Bu] Length = 403 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 180/361 (49%), Gaps = 33/361 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI------------- 55 +KTEA + ++ E A EG SRE + F+ +LA Y + + I Sbjct: 8 DKTEAATPRRREKAREEGQVARSRELASFA-LLASGFYGTWLLAGPIGRHLQTMLRGAFT 66 Query: 56 --YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 + D + +L SA LE ++ + LL + ++A L +G +LI Sbjct: 67 FDRGIAFDTNRMLTSAGSVSLEGLAALAPLLAMMGVAA---------LLAPMALGGWLIS 117 Query: 114 -RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 + L L+ + P G+ RI+S+ + S K ++VG I I++ + Sbjct: 118 SKTFELKLDRLNPIT-------GLGRIFSVQGPIQLGMSLAKTLVVGGIGGIAIWRSKDE 170 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +L H+ L A V + + + LD+ + Q+ KL+M+K+E+K E Sbjct: 171 LLGLAMQPLHAALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKRE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y AP +V Sbjct: 231 HRENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGAMRAPKVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y Sbjct: 291 AKGVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|77918767|ref|YP_356582.1| flagellar biosynthesis protein FlhB [Pelobacter carbinolicus DSM 2380] gi|77544850|gb|ABA88412.1| flagellar biosynthetic protein FlhB [Pelobacter carbinolicus DSM 2380] Length = 351 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 188/353 (53%), Gaps = 10/353 (2%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD-LH 63 D+ +TE + K+ D +G S+E ++++ + L F++P + SD LH Sbjct: 3 DSDQERTEQATGKRRADFRQKGQVAQSKEVHT-AALMTGTLLLWTFYAPLFWRTLSDMLH 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + A ++ +S V LL L + L+ P +L ++ GI S +Q + + Sbjct: 62 HLWSLAGDFEVTPVSA-VMLLGQLGQKIALLLAPIMLTTLVIGILSSYLQVGWLFTTKPL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PH 182 P F +++ G+ ++ S + + +KS +K+ LVG + + + LD + + Sbjct: 121 APDFSKMNPVPGLAKLISKRSFIEVVKSLLKVFLVGVVAYKVILAEFGQALDLVDMDIND 180 Query: 183 SILYHAFFTVRKVL--IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S++Y A R +L +++ +A L L + W Q K+KM+KQE K+E K+S G+P Sbjct: 181 SVVYLARVAARILLRTCGVMILLALLDFLFVRWEMEQ---KMKMTKQEQKEEHKESEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R +S+ R +MM +A ++ITNPTH ++AL Y ++ AP +VAKG + +A Sbjct: 238 QIKARIRSMQMQAARRRMMAEVPKADVVITNPTHLSVALAYDRSRMSAPQIVAKGADAVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA EH +P+ E +AR LFK V + +P ++AVA+++ +Y K Sbjct: 298 MRIREIAREHKVPLVENKPVARVLFK-VDLGKDVPEEMFQAVAEILAYVYGLK 349 >gi|296274004|ref|YP_003656635.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM 7299] gi|296098178|gb|ADG94128.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM 7299] Length = 350 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 109/350 (31%), Positives = 196/350 (56%), Gaps = 18/350 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P++KK+E A EGN P S E + +L +Y+LF+ S Y L + + + Sbjct: 6 DKTEEPTAKKLEKARGEGNVPKSGEVVGAAILLFGTVYMLFW-STYTYDSIKKLMIYIFN 64 Query: 69 ATQRKLE-----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 ++L ++++ + SL+ LV+ +LL ++ + + P+ Sbjct: 65 KIGQELTSTDYYNMTNAIITTIFYSLAPFFLVV--ILLAIILNVVQFGFLTNPI------ 116 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K F++++ G+K ++S+ L+ K K+ L+ ++TI Y + + + S Sbjct: 117 KLKFEKLNPVSGLKGLFSLKKLLEATKLLAKLTLIVFVMTILFGLTYKGFIAMMDKDITS 176 Query: 184 ILYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 L A FT+ + +LFI L ++D ++ H ++ LKMSK+E+KDE K G+P + Sbjct: 177 SL-DAMFTLLLYFVGAILFIVILFAIIDYFFTRHYYFKSLKMSKEEVKDEHKNMEGDPKV 235 Query: 243 KNRQKSIARSRIRHKMMEATSR-ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 K + K I + ++ ++ M A+++ A ++ITNPTHY++AL+Y N AP +VAKG + +A Sbjct: 236 KAKIKGI-QYKLHYERMRASAKDADVVITNPTHYSVALQYDSAVNSAPKVVAKGIDFLAL 294 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R +A E+ IPI E P+LAR+L+ Q+ I+ IP FY+A+A++ ++ Sbjct: 295 KIRDVAKENKIPIIENPALARALYDQIQIDQEIPGEFYQAMAEVFSYVFE 344 >gi|237653600|ref|YP_002889914.1| flagellar biosynthesis protein FlhB [Thauera sp. MZ1T] gi|237624847|gb|ACR01537.1| flagellar biosynthetic protein FlhB [Thauera sp. MZ1T] Length = 380 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 188/362 (51%), Gaps = 29/362 (8%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTS 60 D+ KTE PSS+++E A EG P SRE S F + A L+ L + + + + Sbjct: 3 EDSDLEKTEDPSSRRLEQAREEGQVPQSRELSTFLVTMTGAATLLLLGGWMAGRVMGLFR 62 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-----------MMFGIGS 109 D A R+ +++ + L + L + + LF M+ G Sbjct: 63 D-----GFAFDRRAAFDENVMLDMLERMLGGALLTL--MPLFVALMVAAVAAPMVLG--- 112 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 L+ VL L F R+ +G+ R++S++ LV K+ +K +LVG + + L Sbjct: 113 GLVFAPKVLGLK-----FDRLDPLQGLGRMFSLHGLVEMFKAILKSVLVGGVAALVLWYE 167 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + + + + + T+ ++I+L + L +D+ + Q++ KL+M+K+E+ Sbjct: 168 FEHLFSLMVEPLETGMADFSATIVFATLLIVLSLGLLAAIDVPFQLWQYHKKLRMTKEEV 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K E K+ G+P+IK R +++ R R +MM +A +++TNPTH+++AL+Y + AP Sbjct: 228 KRESKEQEGDPMIKGRIRAMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAAKMGAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V+VAKG+ +A K+R+IA E +P+ E P LAR+L+K + AIP Y AVA+++ + Sbjct: 288 VVVAKGRGELALKIREIAKESEVPLLEAPPLARALYKHCELEQAIPAALYTAVAEVMAYV 347 Query: 350 YH 351 Y Sbjct: 348 YQ 349 >gi|310767884|gb|ADP12834.1| Flagellar biosynthesis protein FlhB [Erwinia sp. Ejp617] Length = 383 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 190/351 (54%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ + KTE+P++ ++E A EG P SRE +S+L + L + G + + + Sbjct: 3 QDSDEEKTESPTAHRLEKAREEGQIPRSRE---LTSLLMLMTGLSILWVGGEW-MGRKMG 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LLA + D S ++ L+ ++ L A V+P + ++ I + ++ VL+ Sbjct: 59 ALLADGLVFNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ +++S + +K+ +K LVG + + + ++ ML ++ + Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSAQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPIVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++ + IP+ E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQ 349 >gi|301018276|ref|ZP_07182787.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1] gi|331663378|ref|ZP_08364288.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143] gi|300399746|gb|EFJ83284.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1] gi|331059177|gb|EGI31154.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143] Length = 382 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 110/366 (30%), Positives = 198/366 (54%), Gaps = 33/366 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFF------------ 50 +D D+KTEAP+ ++E A EG P SRE SL IL + +++F Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLL--ILVVGVSVIWFGGVSLARRLSGM 59 Query: 51 FSPGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107 S G++ S+ +D +++L E + ++ L++ + L A L+ P +L ++F Sbjct: 60 LSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSG 117 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 S ++P F +++ GIKR++S +K+ +K ILVG++ L Sbjct: 118 KS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLW 164 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 ++ M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q Sbjct: 165 HHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQ 224 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 +I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + Sbjct: 225 DIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMS 284 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ Sbjct: 285 APKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLA 344 Query: 348 KIYHKK 353 ++ K Sbjct: 345 WVWQLK 350 >gi|116694207|ref|YP_728418.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha H16] gi|113528706|emb|CAJ95053.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 380 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 180/358 (50%), Gaps = 27/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S +++E A EG SRE + F ++A + G++++ L L Sbjct: 8 EKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVT--------GLWTLGGHLGRSLNQ 59 Query: 69 ATQRKLEDISHIVF----LLTHLSLSASRLVIPGLLLFMMFGI---------GSYLIQRI 115 Q L F +L+ ++ ++ L L +FG+ G + Sbjct: 60 VMQGALRFEPATAFDTSRMLSRFAMMVWDSLLAFLPLLFLFGVAALAAPLLLGGW----- 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + P F R+S G+ R++S ++LV +K+ K +LVG++ L + Sbjct: 115 -VFSGKSFAPQFSRLSPLAGLGRMFSAHSLVELLKAVAKSLLVGSVGAWVLWRRLPEAIA 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 ++A L H V +++ L + + +D+ W Y +++ KL+M+K+E+K E K+ Sbjct: 174 LMNAPVQEALLHMVDLVMYCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKE 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P IK R + R+ R +MM +A +++TNPTH+A+ALRY + AP +VAKG Sbjct: 234 SEGDPHIKGRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++R++A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 294 TGDIAARIRELAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351 >gi|332994108|gb|AEF04163.1| flagellar biosynthesis protein [Alteromonas sp. SN2] Length = 376 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/364 (28%), Positives = 200/364 (54%), Gaps = 24/364 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----I 55 M+++D+ + KTE P+ KK+ED +G SRE S ++++ + +F F G + Sbjct: 1 MADSDSSE-KTEDPTGKKLEDTRKKGQIARSRELS--TTLVLVVSAFMFLFVGGWIAESV 57 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQ 113 + +T + VL ++ + D +H + + S + +P +LL+M + G Y Sbjct: 58 FKLTQRMFVL----SRDETYDTTH---MFGAWGEAISTVSVP-VLLYMTVAMLAGIYGSI 109 Query: 114 RIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT--EN 169 + N FK ++S G KR++ +N LV +KS K++++ + +L E+ Sbjct: 110 ALGGYNFTWEGAKFKGSKMSPLSGFKRMFGMNGLVELIKSIAKVVVIVGMALGALLFFED 169 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 LD + P +I +HA ++ IM++ + + ++D+ + ++ ++KM+KQE+ Sbjct: 170 EALHLD-LELYPGNI-FHALDMLKWAFIMLVCGMIPIALIDVPYQIYKHNKEIKMTKQEV 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 KDE K S G+P++K R + + +MM+ +A +++TNPTHY++A++Y + N AP Sbjct: 228 KDERKNSEGDPLVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHYSVAIKYDDSGNRAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V+VAKG + +A +RKIA +++P+ P LAR+++ I+ +P + AVAQ++ + Sbjct: 288 VVVAKGTDELAMHIRKIATANDVPLIPSPMLARAVYYSTEIDGEVPNALFMAVAQVLAHV 347 Query: 350 YHKK 353 Y K Sbjct: 348 YQLK 351 >gi|194434131|ref|ZP_03066400.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012] gi|194417675|gb|EDX33775.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012] gi|332095083|gb|EGJ00117.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 155-74] Length = 382 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + + + S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVPVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTVFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|149928479|ref|ZP_01916714.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105] gi|149822813|gb|EDM82064.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105] Length = 376 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 107/352 (30%), Positives = 192/352 (54%), Gaps = 18/352 (5%) Query: 8 DNKTEAPSS-KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D + + P+S +KI A EGN P SRE +LA + LL+ + S + L Sbjct: 6 DQEKDLPASEQKIRKAREEGNLPRSRELGGGVVLLAG-VGLLYTMGGELVSQSEKLMRQG 64 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH---- 122 + + D H+ + + ++IP LF++ + + ++ I V N Sbjct: 65 LVLDRAQAFDTKHMGLKWVSMLQESLFILIP---LFLVVVVAA-IVSNIAVGGFNWSTKP 120 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISAN 180 ++P +++ +G+K I+S+N L +K+ +K +++G + + L ++ FT L SA Sbjct: 121 LEPKLSKLNPVKGLKNIFSVNGLAELVKAILKTVVLGGVGYLLLMQDLGEFTQL---SAM 177 Query: 181 P--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P H + A T++ LI+ + F+ +++ D+ + ++Y L+M+ +E+K E K+S G Sbjct: 178 PLEHGMAETARITIKDALILAIAFLLIVSI-DVPYQLWRYYKGLRMNLEELKRESKESDG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K + KS+ R R +MM + A +I+TNPTHY++AL+Y + AP +VAKG Sbjct: 237 DPHLKGKIKSMQREAARRRMMASVPNADVIVTNPTHYSVALKYDKDGKGAPRVVAKGIGP 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A K+R++A E+ +P+ E P LAR+L+ V + IP Y AVA+L+ +Y Sbjct: 297 LALKIREVAQENKVPLVEAPPLARALYSNVELEQEIPGALYTAVAKLLAYVY 348 >gi|313896030|ref|ZP_07829584.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137 str. F0430] gi|312975455|gb|EFR40916.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137 str. F0430] Length = 374 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 183/356 (51%), Gaps = 19/356 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + + L+ FFS + + +++ Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELN------TAFVLLIGFFS--LKLLWDSIYLA 75 Query: 66 LASATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 +AS T D +IV L + ++ +P +L M+ G+ Q LN Sbjct: 76 IASYTTYVFANLNQPVDTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQ--VGLN 133 Query: 120 LNHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 N FK L G RI+S +LV KSF KI+++G + + E M F+ Sbjct: 134 FNTEAIEFKLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFM 193 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L + ++ +++ I + V D G+ Q LKM+KQE+KDE+KQ+ Sbjct: 194 FFDLTTSLALVAEIIFRMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTE 253 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK + + R +MM+ +A +IITNPTHYA+AL Y + AP ++AKGQ+ Sbjct: 254 GDPQIKGKIRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAY-EKGMVAPTVLAKGQD 312 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A++++++ E +PI E LAR+L+ V + A+P Y+AVA+++ +Y K Sbjct: 313 LVAQRIKELGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368 >gi|327399034|ref|YP_004339903.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411] gi|327181663|gb|AEA33844.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411] Length = 353 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 196/354 (55%), Gaps = 14/354 (3%) Query: 7 PD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV- 64 PD +KTE + K+ ++A EG S E + +LA +++ +F + D+ + Sbjct: 2 PDEDKTEQATPKRRQEAREEGRVAKSVELNTAFLMLAAVVFF-YFTASNFGEKIKDVLIY 60 Query: 65 --LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV---LN 119 LAS + L+ +V ++ S +++P F++ ++LI + V + Sbjct: 61 FFTLASNFEITLDSFDILVKRISGFMFS---ILLP---FFIVMATIAFLINVVQVGFYIT 114 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++ F +++ G K ++S+ + +KS +K ++G I+ I + +N + Sbjct: 115 PKAMEIKFDKINPVNGFKNMFSLRSFGELVKSLLKASVMGYILWIFIQKNINSWSSLSKT 174 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 N ++ ++ V++ IL+FI + +LD + + + + M+KQE+KDE KQ G+ Sbjct: 175 NQTAVFLVMIKSMFLVVVYILIFIIFMAILDYLFQKYTFEKSIMMTKQEVKDEYKQMEGD 234 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK + +S+ R +MME +A ++ITNPTHYA+AL+Y AP +VAKG NLI Sbjct: 235 PKIKQKIRSMQMEMTRKRMMEEVKKADVVITNPTHYAVALKYDSATMAAPKVVAKGINLI 294 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 AKK+++IA E+++PI E+P LARSL+++V ++ IP Y+AVA+++ ++ K Sbjct: 295 AKKIKEIAKENDVPIVEKPELARSLYEKVKLDREIPEELYQAVAEILAYVFKLK 348 >gi|149194192|ref|ZP_01871290.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus TB-2] gi|149136145|gb|EDM24623.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus TB-2] Length = 351 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 188/353 (53%), Gaps = 18/353 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+E+A EGN S E S F +L I +LF+ + + + Sbjct: 6 EKTEEPTPKKLEEAKKEGNIAKSMEVSGFVVLLVGSIIILFYLKYVTFYLEEYFRYFYSY 65 Query: 69 ATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +E +I F L+ + L+ P + ++ GI ++Q + + + P Sbjct: 66 IG---VELTKNIFFNLIIKSTYYFFILIAPIFIALILAGIIGNVMQFGFLFTIKPILPKL 122 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++++ +G+KR++S+ LV +K+ +K + ++ +L N F+ P L + Sbjct: 123 EKINPIKGLKRLFSVKTLVEGLKTTLKT-FIAFLVGFTLFYN------FLQEIPRLELMN 175 Query: 188 AFFTVR----KVLIMILLFIATL---TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F ++ K +I+I + ++D + + + L+MSKQEIKDE KQ+ GNP Sbjct: 176 FFEQLKWFEDKAVILIFSLLGVFFIFAIIDFTYQKYTYKKSLRMSKQEIKDEYKQTEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MM +A ++ITNPTHYA+A+RY +T+++AP +VAKG + +A Sbjct: 236 EVKAKIRQLQREMAKKRMMAEVPKADVVITNPTHYAVAIRYDKTKDEAPRVVAKGVDNLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA E + I E P LAR L+K V + IP +KAVA+++ +Y K Sbjct: 296 IKIKEIAREAGVMIVENPPLARELYKSVEVGEIIPQKLFKAVAEVLAYVYRAK 348 >gi|302670739|ref|YP_003830699.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus B316] gi|302395212|gb|ADL34117.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus B316] Length = 383 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 187/368 (50%), Gaps = 27/368 (7%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSV 58 +E+ K+E P+SKK++DA EG S+E + S+LA + L F F ++ Sbjct: 24 AEDANGAEKSEEPTSKKLDDARKEGQVAKSQEVATAFSLLAFFLILRFGYGFMGENFEAI 83 Query: 59 TSDLH--VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 ++ + + +++I + L+ + P + + L+Q Sbjct: 84 FGSVYNTIPFVARMYDGFLPVNYIYSTINKALLTVLLICAPFFIFGFLIAFLCDLVQVGF 143 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++P +++ G+K+I+S + + +KS +K++++G +I + + Sbjct: 144 KPTSKPLQPKLSKLNPISGMKKIFSTRKIFDLLKSILKLVIMGVVI-----------ISY 192 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTV-----------LDIGWSYHQWYSKLKMS 225 S SI +++ + ++ FI L + D+ + +++ + M+ Sbjct: 193 FSNRQESIFLLYDIPLKQAIGLMGSFIIDLGIRIAAAYMIIAFADLIYQRRKFHKDMMMT 252 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+KDE K + GNP +K+ QK R +MM+ +A ++ITNPTHYA+A+RY E Sbjct: 253 KQEVKDEFKNTEGNPEVKSAQKRRMMQASRRRMMQELPKADVVITNPTHYAVAIRYDAEE 312 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 DAP++VAKG + IA+K++++A E+N+ I E LAR L+ V I +PP YKAVA++ Sbjct: 313 ADAPIVVAKGADYIAQKIKEVAKENNVEIVENKPLARMLYANVEIGEMVPPELYKAVAEV 372 Query: 346 IYKIYHKK 353 + +YH K Sbjct: 373 LAYVYHLK 380 >gi|281178949|dbj|BAI55279.1| flagellar protein FlhB [Escherichia coli SE15] Length = 382 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR +S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRTFSAQTGAELLKAILKTILVGSVTGFFLWYHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|296157469|ref|ZP_06840304.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1] gi|295892241|gb|EFG72024.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1] Length = 406 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 186/366 (50%), Gaps = 32/366 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+ + ++++ A EG SRE S F+ L+ FF G++ ++ Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-----LLAAGFF---GVWGMSG 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-----------LLLFMMFGIGS 109 + L+ + F H +R ++ G LL + F + Sbjct: 52 SIG--------EHLQGMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAA 103 Query: 110 YLIQRIPV----LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 L + + L+ ++P F R++ G+ +++SIN + S VK ++VG I + Sbjct: 104 ALFAPMALGGWQLSSKGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTA 163 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + +L + L + + M + + + LD+ + Q++ KL+MS Sbjct: 164 IWNRREEILALATQPLQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMS 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E+K E ++S G+P +K R + R+ R +MM +A +++TNPTH+A+AL+Y E Sbjct: 224 KEEVKREHRESEGDPHVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGE 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG NL+A ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA++ Sbjct: 284 MRAPKVVAKGVNLVAARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEV 343 Query: 346 IYKIYH 351 + +Y Sbjct: 344 LAWVYQ 349 >gi|320529415|ref|ZP_08030503.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399] gi|320138381|gb|EFW30275.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399] Length = 374 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 183/356 (51%), Gaps = 19/356 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + + L+ FFS + + +++ Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELN------TAFVLLIGFFS--LKLLWDSIYLA 75 Query: 66 LASATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 +AS T D +IV L + ++ +P +L M+ G+ Q LN Sbjct: 76 IASYTTYVFANLNQPVDTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQ--VGLN 133 Query: 120 LNHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 N FK L G RI+S +LV KSF KI+++G + + E M F+ Sbjct: 134 FNTEAIEFKLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFM 193 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L + ++ +++ I + V D G+ Q LKM+KQE+KDE+KQ+ Sbjct: 194 FFDLTTSLALVAEIIFQMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTE 253 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK + + R +MM+ +A +IITNPTHYA+AL Y + AP ++AKGQ+ Sbjct: 254 GDPQIKGKIRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAY-EKGMVAPTVLAKGQD 312 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A++++++ E +PI E LAR+L+ V + A+P Y+AVA+++ +Y K Sbjct: 313 LVAQRIKELGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368 >gi|23099029|ref|NP_692495.1| flagellar biosynthesis protein FlhB [Oceanobacillus iheyensis HTE831] gi|22777257|dbj|BAC13530.1| flagella-associated protein [Oceanobacillus iheyensis HTE831] Length = 359 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 106/349 (30%), Positives = 184/349 (52%), Gaps = 13/349 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK D +G S++ + +L C I L F S + +T Sbjct: 13 EKTEKATPKKRLDERKKGRVAKSQDVNTALLLLGCFIALFVFGSYMLQYMTGFFEKSFTE 72 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L + ++ + SL A ++ P +++ ++ G+ + L+Q + + +K K Sbjct: 73 YIHWDLTE-KNVQLMFNSASLDAGMMLAPIMIIAIITGMAANLVQVRFLFSTEPLKFDLK 131 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVG--TIITISLTENYFTMLDFISANPHSILY 186 ++ +G KRI+SI LV F+KS +KI+ VG T I + ++ M F+ A Sbjct: 132 KIDPIQGAKRIFSIRALVEFLKSMLKIVFVGIVTFYVIWIFKDDMLMTAFLDAKGA---L 188 Query: 187 HAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 F TV ++ I++L+F+A + D + + ++MSKQ+IKDE K G+P+I Sbjct: 189 GFFATVTAIMGFAAIILLVFLA---LFDYWYQKFDFEKNIRMSKQDIKDEYKNVEGDPLI 245 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++ K R +MM A +IITNPTHYA+A++Y +++ +AP ++AKG + IA+K Sbjct: 246 KSKIKEKQRQMATRRMMSEVPNADVIITNPTHYAVAIKYDESKANAPYILAKGTDQIAQK 305 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++IA H++ + E LAR L V I IP +++AVA+++ +Y Sbjct: 306 IKEIAKNHDVIMVENRPLARGLHDAVEIGEIIPEAYFQAVAEVLAYVYR 354 >gi|197334476|ref|YP_002156665.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11] gi|197315966|gb|ACH65413.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11] Length = 376 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 197/361 (54%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 M+E+D + +TE +SK+++ A ++G S+E AS+ S+L C L +F + Sbjct: 1 MAESDGQE-RTEDATSKRLQQAKDKGQVARSKELASV--SVLVCGAVALMWFGEDVARAL 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-LLLFMMFGIGSYLIQRIPVL 118 + S ++ ++ D + ++ ++ ++ LV P L+L +F + + Sbjct: 58 FSVMERFFSISREEIYDTNKLLEIVGGALIA---LVFPVFLILITLFVAALAGAAGLGGI 114 Query: 119 NLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173 + + P F +++ GIKR++ + + V +KS +K+ LVG + + E+ F + Sbjct: 115 SFSSEAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQL 174 Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 LD AN ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE Sbjct: 175 SLDTYPAN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K++ G P +K R + + R + +MM A +++TNP HY++ALRY Q+++ AP++V Sbjct: 231 YKETEGKPEVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ Sbjct: 291 AKGVDHVAMKIREIAREHNIYILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQM 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|215487092|ref|YP_002329523.1| flagellar biosynthesis protein FlhB [Escherichia coli O127:H6 str. E2348/69] gi|312967082|ref|ZP_07781300.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75] gi|215265164|emb|CAS09552.1| predicted flagellar export pore protein FlhB [Escherichia coli O127:H6 str. E2348/69] gi|312288546|gb|EFR16448.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75] Length = 382 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQ G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQREGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|292488559|ref|YP_003531443.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|292899731|ref|YP_003539100.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946] gi|291199579|emb|CBJ46696.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946] gi|291553990|emb|CBA21035.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|312172704|emb|CBX80960.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC BAA-2158] Length = 383 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 191/351 (54%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ + KTE+P++ ++E A EG P SRE +SIL + L + G + + + Sbjct: 3 QDSDEEKTESPTAHRLEKAREEGQIPRSRE---LTSILMLITGLSILWVGGEW-MGRKMG 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LLA + D S ++ L+ ++ L A V+P + ++ I + ++ VL+ Sbjct: 59 ALLADGLVFNHSVVSDSSQMLRLVANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ +++S + +K+ +K LVG + + + ++ ML ++ + Sbjct: 119 KAIKFDPGKMNPVKGLAKLFSAQSASELLKAVLKATLVGIVCGLYIWHHWAGMLHLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PLIALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVLAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++A E+ IPI E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 299 LRIRELAAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQ 349 >gi|183598609|ref|ZP_02960102.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827] gi|188020787|gb|EDU58827.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827] Length = 383 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 12/354 (3%) Query: 4 NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----IYS 57 +D D KTE P+ K + A ++G S+E S +LA + L + S G + Sbjct: 2 SDESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVS--LLWLSGGHLADELRQ 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + + Q L +S+ ++ +L A VI GL L GI + + + Sbjct: 60 IFRQGFIFDGHYIQNTLLMVSYFGRMVGE-ALFALLPVIGGLALV---GISASSLVGGLL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 N +K K+++ G+KRI+S+N L K+ +K + VG I L +N+ ++L + Sbjct: 116 FNSKLIKFDLKKLNPISGLKRIFSMNALSELFKAILKSLFVGLGAAIFLWQNWSSLLHLV 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + +P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ Sbjct: 176 TESPVTALGNAMHKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK + + R+ R++MM +A +I+TNPTHYA+AL+Y AP ++AKG Sbjct: 236 GDPQIKAKIRQQQRAIARNRMMADVPQADVIVTNPTHYAVALKYDDKRMGAPKVLAKGAG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +IA+++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y Sbjct: 296 VIAQRIKEIGQEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQ 349 >gi|222053619|ref|YP_002535981.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32] gi|221562908|gb|ACM18880.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32] Length = 354 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 110/357 (30%), Positives = 194/357 (54%), Gaps = 10/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFFFSPGIY 56 MSE D +KTE P++KK+ +A +GN P SR+ SL S I+A + F S Sbjct: 1 MSEED-KHSKTEQPTNKKVSEAKEKGNIPRSRDLTSTLSLTSGIIALYVTGGFMAS---- 55 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + S + AS + ++ + + I L+ L L+ + ++ P LL+ ++ + + + Q Sbjct: 56 KLKSSSAEIFASLSTKEFTE-AGIYMLMLKLFLTMTLVLAPFLLIVIVASLAAEVSQGGI 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + +++ GIKR+++ + +V +KSF+KII+VG + + + +++ Sbjct: 115 STSFEKIGFDLDKLNPVHGIKRLFNKDAVVEMLKSFLKIIIVGYMAYKVMRDEVDSVIYL 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + +I K++I + L VLD+ + ++ LKM+KQE+KDE K + Sbjct: 175 VDMDIPAIAEFVSHISFKLVIHTCGVLFILAVLDLAFVKWRFIENLKMTKQEVKDENKDA 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK + K + R +M A +++TNPTH+A+AL+Y + + APV++AKG Sbjct: 235 EGDPHIKGKIKQKQYDQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGA 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A+K+++IA E NI + E LAR LF QV IP Y AVA+++ +Y K Sbjct: 295 DFLAQKIKEIARESNITLVENRPLARELFAQVKEGEEIPEALYAAVAEILAYVYKLK 351 >gi|114777581|ref|ZP_01452562.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1] gi|114552052|gb|EAU54569.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1] Length = 355 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 185/356 (51%), Gaps = 6/356 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ +TE + K+ EDA +G S+E S ++I +I L+ G + Sbjct: 1 MADEQDKSQQTEEATPKREEDARKKGQIATSKEPS--TAIAFTVISLIVITGLGSWFGEQ 58 Query: 61 DLHVL---LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 H+L L+ A K L++ ++ + +V+P + M+ G+ + PV Sbjct: 59 MQHMLTNYLSGAVHIKATGEGMQKLLISAVT-DMAMVVLPIAVPIMLLGLLVTFMVSGPV 117 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + P F+++S +GIKR++S L F+KS +K++L+ ++ + +L Sbjct: 118 FTFETMIPKFEKISPLKGIKRLFSTKALAEFIKSVLKLVLISVACATIVSGMFSEILHTA 177 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +P I F K+ ++ + + + D+ + + L+MSK+E +DE K S Sbjct: 178 LKDPADIAALTLFGSVKITTLVAVIFVVIALADVLYQRWEHAKSLRMSKKEQRDEHKDSE 237 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K + + I + +++MM A +IITNPTH ++AL Y AP ++AKG+ Sbjct: 238 GDPQLKAKIRQIQMQQAQNRMMSDVPDADVIITNPTHISIALAYDPLSPGAPRVLAKGKG 297 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R+IA EH+IP+ E LARSLFKQV + IP V ++A+A ++ +I+ K Sbjct: 298 HLAAKIREIAREHHIPMRENKPLARSLFKQVKVGDEIPEVLFEAIAIILAEIFRLK 353 >gi|300935856|ref|ZP_07150814.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] gi|300458968|gb|EFK22461.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] Length = 382 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ ++ L Sbjct: 2 SDEIDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-ALARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|15615002|ref|NP_243305.1| flagellar biosynthesis protein FlhB [Bacillus halodurans C-125] gi|10175059|dbj|BAB06158.1| flagella-associated protein [Bacillus halodurans C-125] Length = 363 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 198/355 (55%), Gaps = 20/355 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV---- 64 KTE + KK +D+ +G S + + +L ++L F P + L + Sbjct: 15 EKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLCVFLFLWLFGGPLLGGTLEKLLIHTFE 74 Query: 65 --LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 LL T+ E ++ ++F +++ A+ +++P + + ++ G+ + IQ P+ Sbjct: 75 SYLLMDVTE---ESVAELMF---EITMEAAIVLLPIMAIALIAGVLASYIQVGPLFTTEP 128 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K ++ +G KRI+S+ LV F+KS +KI+L G + S+ +F++ D + + Sbjct: 129 LKMKLSKIDPIKGAKRIFSVRALVEFLKSLLKIVLTG-LAAFSIV--WFSLEDVMLLSQK 185 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSY-HQWYS---KLKMSKQEIKDEIKQSYG 238 S+ ++F TV ++ ++ + IA L ++ Y +Q Y +++MSKQ++KDE K G Sbjct: 186 SV-ENSFVTVAQLTALLGILIAILLLILSIPDYLYQRYDHEKQIRMSKQDVKDEHKNVEG 244 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K+++K +MM+ +A ++ITNPTHYA+AL+Y Q++ DAPV+VAKG + Sbjct: 245 DPKVKSKRKQKQMEMAMQRMMQEVPKADVVITNPTHYAIALKYDQSKMDAPVIVAKGVDY 304 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++ +A +HN+ E LAR+L+ Q I +P +KAVA+++ +Y K Sbjct: 305 VAFKIKSLAKQHNVVTVENKPLARALYDQADIGDQVPEQLFKAVAEVLAYVYRLK 359 >gi|253998503|ref|YP_003050566.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4] gi|253985182|gb|ACT50039.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4] Length = 384 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 32/368 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIY 56 M+E D+ KTE + K++E A EGN P SRE A L + + + F + Sbjct: 1 MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP----GLLLFMMFGIGSYLI 112 ++ LH A A L LL +S S L+I LLF+M LI Sbjct: 60 TMGGSLHFERALAYDSNL--------LLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLI 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 V N V P F R++ G+ + S N LV +K+ K ILVG++ + + + T Sbjct: 112 GGWNVSNQAFV-PKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDT 170 Query: 173 MLDFIS-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 +L A +L +FF + L++I +D+ + + + LKM+ Sbjct: 171 ILSLALLPLHTSIAEVEDMLLKSFFFIVGALVLI-------AAIDVPYQLTTYANNLKMT 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E+K E K+S GNP IK R + R R +MM +A ++ITNPTHYA+A++Y + Sbjct: 224 KEEVKQESKESEGNPQIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELG 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 APV++AKG + +A K+R++A EH I E P LAR+L+ + IP Y AVA++ Sbjct: 284 MRAPVVIAKGADAVALKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEI 343 Query: 346 IYKIYHKK 353 I ++ + Sbjct: 344 IAYVFQMR 351 >gi|91785647|ref|YP_560853.1| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400] gi|91689601|gb|ABE32801.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400] Length = 406 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 181/358 (50%), Gaps = 31/358 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE+ + ++++ A EG SRE S F+ L+ FF G++ ++ + Sbjct: 8 EKTESATPRRLQKAREEGQIVRSRELSTFA-----LLAAGFF---GVWGMSGSIG----- 54 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----------LLLFMMFGIGSYLIQRIPV 117 L+ + F H +R ++ G LL + F + L + + Sbjct: 55 ---EHLQGMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMAL 111 Query: 118 ----LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 L+ ++P F R++ G+ +++SIN + S VK ++VG I ++ + Sbjct: 112 GGWQLSSKGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEI 171 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L + L + + M + + + LD+ + Q++ KL+MSK+E+K E Sbjct: 172 LALATQPLQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREH 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 ++S G+P +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VA Sbjct: 232 RESEGDPHVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG NL+A ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y Sbjct: 292 KGVNLVAARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQ 349 >gi|328911742|gb|AEB63338.1| component of the flagellar export machinery [Bacillus amyloliquefaciens LL3] Length = 360 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +D +G S + + + ++ LI L + G Y L + Sbjct: 14 EKTEKATPKKRKDTRKKGQVAKSTDVN---TAVSLLIIFLSLIALGPYMRDRLLSFIKTF 70 Query: 69 ATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 T+ ++S H +F+ T +S ++ P +L+ ++ GI S +Q + + +K Sbjct: 71 YTKSIALELSESNVHELFVDTVKDISL--ILAPIMLVALLAGIVSNYMQVGFLFSAEVLK 128 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P ++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P + Sbjct: 129 PDLNKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEV 188 Query: 185 LYHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 L F + L M L L +L D + + ++MSKQ+IKDE K+S G+PI Sbjct: 189 LT---FVSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPI 245 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A Sbjct: 246 IKSKIKQKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLAL 305 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 306 KIRQIAKEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 357 >gi|308173601|ref|YP_003920306.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7] gi|307606465|emb|CBI42836.1| component of the flagellar export machinery [Bacillus amyloliquefaciens DSM 7] gi|328553467|gb|AEB23959.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens TA208] Length = 359 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +D +G S + + + ++ LI L + G Y L + Sbjct: 13 EKTEKATPKKRKDTRKKGQVAKSTDVN---TAVSLLIIFLSLIALGPYMRDRLLSFIKTF 69 Query: 69 ATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 T+ ++S H +F+ T +S ++ P +L+ ++ GI S +Q + + +K Sbjct: 70 YTKSIALELSESNVHELFVDTVKDISL--ILAPIMLVALLAGIVSNYMQVGFLFSAEVLK 127 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P ++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P + Sbjct: 128 PDLNKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEV 187 Query: 185 LYHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 L F + L M L L +L D + + ++MSKQ+IKDE K+S G+PI Sbjct: 188 LT---FVSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPI 244 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A Sbjct: 245 IKSKIKQKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLAL 304 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 305 KIRQIAKEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356 >gi|313200589|ref|YP_004039247.1| flagellar biosynthetic protein flhb [Methylovorus sp. MP688] gi|312439905|gb|ADQ84011.1| flagellar biosynthetic protein FlhB [Methylovorus sp. MP688] Length = 384 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 32/368 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIY 56 M+E D+ KTE + K++E A EGN P SRE A L + + + F + Sbjct: 1 MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP----GLLLFMMFGIGSYLI 112 ++ LH A A L LL +S S L+I LLF+M LI Sbjct: 60 TMGGSLHFERALAYDSNL--------LLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLI 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 V N V P F R++ G+ + S N LV +K+ K ILVG++ + + + T Sbjct: 112 GGWNVSNQAFV-PKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDT 170 Query: 173 MLDFIS-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 +L A +L +FF + L++I +D+ + + + LKM+ Sbjct: 171 ILSLALLPLHTSIAEVEDMLLKSFFFIVGALVLI-------AAIDVPYQLTTYANNLKMT 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E+K E K+S GNP IK R + R R +MM +A ++ITNPTHYA+A++Y + Sbjct: 224 KEEVKQESKESEGNPQIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELG 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 APV++AKG + +A K+R++A EH I E P LAR+L+ + IP Y AVA++ Sbjct: 284 MRAPVVIAKGADAVALKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEI 343 Query: 346 IYKIYHKK 353 I ++ + Sbjct: 344 IAYVFQMR 351 >gi|288553046|ref|YP_003424981.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4] gi|288544206|gb|ADC48089.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4] Length = 363 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 197/358 (55%), Gaps = 24/358 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG--IYSVTSDL--H 63 D KTE + KK +D+ +G +++ + ++I+ L++L +F G I S DL H Sbjct: 13 DEKTEKATPKKRQDSRKKGQ--VAKSTDVNTAIILLLVFLFLWFFGGAIIGSTLMDLMKH 70 Query: 64 V----LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 V LL T R E + + + A+ +++P +L+ M+ G+ + IQ P+ Sbjct: 71 VFQTYLLMDVTPRSFE------AMFKEIVMEAAVVLLPIMLVAMVAGVAASYIQVGPLFT 124 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + +K ++ +G KRI+S+ +V +KS +KI G ++ + L +F + D + Sbjct: 125 TDPLKMKLSKIDPIKGFKRIFSVRAIVELLKSLLKIAFAGVVVFVIL---WFNLEDVLLL 181 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + ++ F+ + ++ ++ + +A L ++ D + + ++KMSK++IKDE K Sbjct: 182 SQKAVA-DGFYVIAQLTALMGVAVAVLLLFLSIPDYLYQKYDHEKQIKMSKKDIKDEHKN 240 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P IK+++K +MM+ A ++ITNPTHYA+AL+Y + + DAP++VAKG Sbjct: 241 MEGDPRIKSKRKQKQMEMAMQRMMQEVPNADVVITNPTHYAIALKYDEEKADAPIIVAKG 300 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A+K++ IA EH++ + E LAR+L+ I +P +KAVA+++ +Y K Sbjct: 301 VDYVAQKIKGIASEHDVVLVENKPLARALYANADIGEQVPEDMFKAVAEVLAYVYRLK 358 >gi|302185378|ref|ZP_07262051.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. syringae 642] Length = 378 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++DA +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGS-DIALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EIKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|254459117|ref|ZP_05072540.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD 1] gi|207084388|gb|EDZ61677.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD 1] Length = 349 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 117/354 (33%), Positives = 187/354 (52%), Gaps = 19/354 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVT 59 +DA KTE P+ KKIEDA EGN P S++ S LF +ILA L +LF + + Sbjct: 3 DDA--EKTEEPTPKKIEDARKEGNVPKSQDTSGVITLFVAILATL--MLFPYMSNHMLLL 58 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + L KL I + + L +++P + + G+ + L Q + Sbjct: 59 FKYYFSLIGTPLDKLFMIDIAIVTIKEFLL----IIMPLAIAVAISGVIAALAQFGFLFT 114 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P FK++ +G K ++S+ L+ +K K T + I + +L+ + Sbjct: 115 TKAIMPDFKKIDPIKGTKNLFSMKKLIESVKITFKSF---TTLGIGFVFFFLYILELPTV 171 Query: 180 NPHSILYHAFFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 S+ + K +I+ +LL I ++DI Q++ LKMSKQEIKDE+K Sbjct: 172 ALFSLGEQLVWLKDKAIILAFVMLLIIFVFAMIDIVIVRKQYFDGLKMSKQEIKDEMKNM 231 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P+IK + + I R +MM A +IITNPTHYA+AL+Y +++ AP +VAKG Sbjct: 232 EGDPLIKGKIRQIQMQASRKRMMAEVPNADVIITNPTHYAVALKYEESKR-APYVVAKGM 290 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + IA++++KIA E+N+ I + P LARSL+ V I+ IP + AVA+++ +Y Sbjct: 291 DNIAQQIKKIARENNVHIVQNPPLARSLYADVEIDKPIPEELFAAVAEVLAYVY 344 >gi|114332395|ref|YP_748617.1| flagellar biosynthesis protein FlhB [Nitrosomonas eutropha C91] gi|114309409|gb|ABI60652.1| flagellar biosynthetic protein FlhB [Nitrosomonas eutropha C91] Length = 376 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/352 (29%), Positives = 182/352 (51%), Gaps = 10/352 (2%) Query: 6 APDN---KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62 A DN +TE S +++E + EG S+E + F+ ++A L S + L Sbjct: 2 ADDNDLERTEPASPRRLEKSREEGQVARSQELTTFTMLMAASGSLWVIGS----LIIQKL 57 Query: 63 HVLLASATQRKLEDISHIVFLLT---HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 LL S Q + E + LL L+L + P L ++ + S ++ + + Sbjct: 58 SALLESGLQIEREVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIVALVSPMLLSGWLFS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P FKR++ G KRI+S + L+ +K+ K ++G + + + +LD I Sbjct: 118 SKALFPDFKRLNPVNGFKRIFSSHGLIELVKAIAKAAVIGGVAAGIIWSHKQDVLDLIGM 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + L + ++I+ + L V+D+ + +L+MSK++++ E K+ G+ Sbjct: 178 PLDTGLTSMGRLIGLTFMLIVGAMLLLVVIDVPFQLWNHARQLRMSKEDLRKEAKEDEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R +S+ R R +MM RA +++TNPTHYA+AL+Y AP +VAKG LI Sbjct: 238 PQVKARIRSMQREMARRRMMAEVPRADVVVTNPTHYAVALKYQDHSMRAPKVVAKGSQLI 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A ++R++A EH+IP+ E P LAR+L+ V +++ IP Y AVA ++ ++ Sbjct: 298 AARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYVFQ 349 >gi|331269330|ref|YP_004395822.1| flagellar biosynthetic protein FlhB [Clostridium botulinum BKT015925] gi|329125880|gb|AEB75825.1| flagellar biosynthetic protein FlhB [Clostridium botulinum BKT015925] Length = 594 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 104/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G P S+E S +L I LL S D+ Sbjct: 245 ASDDKTEEATPHKLSEARKKGQVPKSKEVSSAIILLTSTIILLTLGEYVANSFKKDIIEF 304 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + +L ++S ++ ++ + + +P ++ M+ GIG+ L+Q + + +KP Sbjct: 305 FTNYLNIEL-NVSSLISIIVTILWRFMIVFLPVVVPLMVMGIGANLLQTGYINSKEPLKP 363 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G K+++S+ ++ +K I ++G + L N+ +L + I+ Sbjct: 364 QLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFVGYGFLKSNFRKVLSMTTLRFPVII 423 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + L + + + D + Q+ +KMSKQE+K+E KQ G+P +K + Sbjct: 424 TSFLKLTTNIFFRVSLVMIAIALTDFIYQKFQFKRDMKMSKQEVKEEFKQMEGDPQVKGK 483 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ A+++ITNPTH A+AL+Y E++AP+LVAKG + IA K+++ Sbjct: 484 IKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGEDNAPMLVAKGSDYIAIKIKQ 543 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353 IA E+++PI E LAR +FK+V I + IP Y+AVA+ L+YK+ +K Sbjct: 544 IAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLKRQK 594 >gi|312135835|ref|YP_004003173.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor owensensis OL] gi|311775886|gb|ADQ05373.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor owensensis OL] Length = 366 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/356 (31%), Positives = 195/356 (54%), Gaps = 23/356 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL--- 65 KTE + +K ++A G SRE + ++L +++L F +S +T L Sbjct: 15 TKTEKATPRKRQEARKRGMVAKSREVTSAFALLMSILFLKFGYSL----ITQPLQAFSTY 70 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQRIPVLN 119 +E++ LL + ++ ++V+P L M + GS+LI Sbjct: 71 FFGNLDYNIENVRDASRLLGLIVTTSLKIVLPFCLAVMFVATIVEWAQGSFLI------T 124 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFIS 178 +K SF++++ EG KRI+SIN++V +KS +K++++G S T+++ +L+ Sbjct: 125 AESLKISFQKINPIEGFKRIFSINSVVELIKSILKVLVIG-YTGYSYTKSFAKKLLEMYE 183 Query: 179 ANPHSILYHAFFT-VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 N +I+ +F + V +L M ++F + ++D + Q+ KL M+K+E+K+E KQ+ Sbjct: 184 MNVLTIVKFSFDSAVNLILWMSVMFFG-IAIIDFTFQRWQYEKKLMMTKEEVKEEFKQTE 242 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK+R + R +M + RA ++ITNPTHYA+AL Y + DAP ++AKG++ Sbjct: 243 GNPQIKSRIRERQRRISLQRMFQQLPRADVVITNPTHYAVALLYEPEKFDAPRVIAKGKD 302 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA K+++ A ++NI I E LAR+L+ I IPP Y+AVA+++ +Y K Sbjct: 303 YIALKIKQEAMKYNIEIVENKELARALYNICEIGDFIPPELYQAVAEVLAYVYSLK 358 >gi|256750759|ref|ZP_05491644.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus CCSD1] gi|256750342|gb|EEU63361.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus CCSD1] Length = 363 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/347 (31%), Positives = 182/347 (52%), Gaps = 2/347 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67 KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 15 EKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLYT 74 Query: 68 -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 75 YSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAFK 134 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 135 FERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDILK 194 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 195 YALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAEI 254 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++ Sbjct: 255 RRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKEE 314 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IP Y+AVA+++ +Y K Sbjct: 315 AKKLNIPIVENKPLAQALYRSTEIGDMIPSELYQAVAEVLAYVYSLK 361 >gi|258592485|emb|CBE68794.1| Flagellar biosynthetic protein FlhB [NC10 bacterium 'Dutch sediment'] Length = 359 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 189/355 (53%), Gaps = 9/355 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M +DA D +TE+ +SK+ ++A G ++R L +++L L F+ G S+ + Sbjct: 1 MPSDDAKD-RTESATSKRRQEARGRGQ--VARSQDLNAALLMLSGILTFYVLGG--SLVA 55 Query: 61 DLHVLLASATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 DL L+ + L + + + SL + ++ P + ++ S + Q + Sbjct: 56 DLVGLMRFYFGQGLGGELTVPRVQQTMFSASLRMATMLAPLMGTLVVVAYVSSVAQVGFL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 N + + ++R++ G KR+++ L+ +KS +K LVG ++ +L+ + + Sbjct: 116 TNSSALSLKWERLNPATGFKRLFAPGRTLIETIKSILKFALVGFLVYRTLSGHLSEIPLL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + P L ++ + + L TL LD GW Q+ ++M+K+E+K+E+KQ+ Sbjct: 176 MDMTPMQTLTWLGQICFQLALRVGLAFLTLAALDYGWQRWQFEKSIRMTKEEVKEEMKQT 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R K + R H+MM +A ++I NP H+A+A+RY T +AP +VAKG Sbjct: 236 EGDPAVKGRIKGLQRQAAMHRMMTDVPKADVVIVNPIHFAVAMRYDSTSMEAPTVVAKGA 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 L+A+++ +A H IPI E+P LAR+L+K V I IP YKAVA+++ +Y Sbjct: 296 RLVAERIVAMAKAHGIPIVEDPPLARALYKAVSIGRPIPIHLYKAVAEILAYVYQ 350 >gi|330964680|gb|EGH64940.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 369 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 185/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMF-GAGIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ + D S++ L L A +++P L+ + + ++ + + Sbjct: 60 ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ +KR++S + LV +KSF K +++ + + L++ ++ Sbjct: 120 KSLMPKFSRMNPAARLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|192360845|ref|YP_001982207.1| flagellar biosynthesis protein FlhB [Cellvibrio japonicus Ueda107] gi|190687010|gb|ACE84688.1| flagellar biosynthetic protein FlhB [Cellvibrio japonicus Ueda107] Length = 379 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 115/363 (31%), Positives = 193/363 (53%), Gaps = 24/363 (6%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF--FSPG-IY 56 M+E +D+ KTE PS++++E A EG P SR+ + + +L I L F F G + Sbjct: 1 MAEGDDSSQEKTEEPSARRLEKAREEGQIPRSRDLTTTAVLLLAAIGLWVFAEFMGGKLL 60 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQ 113 +T + ++ + ISH+V + LS + L++ LL+ + G +G +L Sbjct: 61 GITRENFIISRTDIFDTNAMISHLVRAIYQGMLSMAPLMVL-LLIASIVGPIALGGWL-- 117 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISL-TENY 170 ++ + P R+ G+KRI+S+ +L+ K+ +K IIL+ TI + L ++ Sbjct: 118 ----MSSKAMMPKLSRMDPIAGLKRIFSLKSLIELFKALLKVSIILLTTIWLLFLYAQDM 173 Query: 171 FTMLDFISANP--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 F + D N HS+ + T+ I++ +DI ++ KLKMS+Q+ Sbjct: 174 FRISDEAVGNAIVHSLEISIYATIALAATTIVI-----AAVDIPLQLYEHNKKLKMSRQD 228 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A ++ITNPTH+A+AL+Y D Sbjct: 229 LKDEAKDTDGKPEVKGRIRQLQREMAQRRMMANVPMADVVITNPTHFAVALKYDPETMDT 288 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P+++AKG + IA K+R+IA HNI E P LAR+++ I+ AIP Y AVAQ++ Sbjct: 289 PIMLAKGGDNIALKIREIAKAHNIETIESPPLARAIYYTTEIDQAIPSGLYLAVAQVLAY 348 Query: 349 IYH 351 ++ Sbjct: 349 VFQ 351 >gi|156933534|ref|YP_001437450.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894] gi|156531788|gb|ABU76614.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894] Length = 348 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 129/219 (58%) Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194 GIKRI+S +L +K+ +K +LVG + + L N+ ++ IS +P + + +A V Sbjct: 98 GIKRIFSSQSLAELLKAILKSVLVGIVTGVFLWYNWPDIMRLISESPIAAMRNALNLVAL 157 Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 I+I++ + + D+ W KL+MS+Q+I+DE K G+P +K R + R Sbjct: 158 CCILIVMGLVPMVGFDVFWQIVSHTKKLRMSRQDIRDEFKNQEGDPHVKGRIRQQQREAA 217 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I EH IP+ Sbjct: 218 RRRMMADIPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGNEHRIPM 277 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 278 LEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 316 >gi|187925774|ref|YP_001897416.1| flagellar biosynthesis protein FlhB [Burkholderia phytofirmans PsJN] gi|187716968|gb|ACD18192.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans PsJN] Length = 403 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 189/369 (51%), Gaps = 38/369 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+ + ++++ A EG SRE S F+ +LA + ++ S S+ Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMS---GSIGE 55 Query: 61 DLHVLLASA----------TQRKL--------EDISHIVFLLTHLSLSASRLVIPGLLLF 102 L +L +A T+R + E + ++ +L ++A LF Sbjct: 56 HLQGMLRAAFSFDHAGAFETRRMMIGAGVASREGLYALLPILAFTGVAA---------LF 106 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162 +G + L+ ++P F R++ G+ +++SIN + S K ++VG I Sbjct: 107 APMALGGWQ------LSAKGLEPKFDRLNPIAGLGKMFSINGPIQLGMSLAKTLVVGVIG 160 Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 ++ +L H L + + M + + + +D+ + Q++ KL Sbjct: 161 GTAIWNRREEILALAMQPLHLALANTVHLIAVCCGMTVAGMFVVAAMDVPYQLWQFHKKL 220 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 +M+K+E+K E ++S G+P +K R + R+ R +MM +A +++TNPTH+A+AL+Y Sbjct: 221 RMTKEEVKREHRESEGDPHVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYT 280 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 E AP +VAKG NL+A ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AV Sbjct: 281 DGEMRAPKVVAKGVNLVAARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAV 340 Query: 343 AQLIYKIYH 351 A+++ +Y Sbjct: 341 AEVLAWVYQ 349 >gi|90406806|ref|ZP_01214998.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] gi|90312043|gb|EAS40136.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] Length = 379 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 191/356 (53%), Gaps = 11/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ ++E + ++I + +G S+E + S +++ I ++ F Y Sbjct: 1 MAENENGTERSEEATPERIRKSKEKGQVARSKELATASVLISAAIAMMTFGGRLAY---- 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-LLLFMMFGI---GSYLIQRIP 116 +L +++ + + + ++ HLS S L P ++LFM+F I GS L+ + Sbjct: 57 ELSIMMKRSFTFERSVLFSPEYIWLHLSTSFYGLAWPMFIILFMLFVISILGSSLLGGM- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + + P + R+S + G+KR+ + V +KS +K+++V L + +L Sbjct: 116 LFSTKALMPKWNRLSPKAGLKRMLGMQAWVELLKSILKVLVVVGAAWWILGATFEHILHL 175 Query: 177 -ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +S+ P S+ Y A + + +M+ + + +D+ + ++ +LKM+KQEIKDE + Sbjct: 176 SVSSLPGSV-YEALDMLLWMFLMLCCSLLIIVAIDVPYQIYKHKEELKMTKQEIKDEYRN 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G P +K R + + + KMME A +I+TNPTHY++AL+Y Q AP +VAKG Sbjct: 235 SEGKPEVKQRIRQLQYEASQRKMMEDVPDADVIVTNPTHYSVALKYEQNGERAPYVVAKG 294 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R++A ++ IP+ E P L R+++ IN +P + A+AQ++ IY Sbjct: 295 VDFMALKIREVARDNEIPVMESPPLCRAIYHTTEINEEVPEELFIAIAQILAYIYQ 350 >gi|237799251|ref|ZP_04587712.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022106|gb|EGI02163.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 378 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 183/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++DA +G S+E + +L LL F S I ++ S Sbjct: 1 MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGS-DIAAMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + T+ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTITRETLMDQSYMGKALLSSGLHALVVILPFLIAMLVAALVGPIMLGGWLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KS K +++ + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALAVLNSERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEKGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTDLDQEIPAGLYLAVAQVLAYVYQ 350 >gi|325288792|ref|YP_004264973.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus DSM 8271] gi|324964193|gb|ADY54972.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus DSM 8271] Length = 355 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 187/346 (54%), Gaps = 11/346 (3%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLH 63 DA K + K+ ++A +G S+E L SSI L +I +L F+ P + +DL Sbjct: 2 DAIAEKRFPATPKRKQEARKKGQVLKSQE--LTSSIMLLAMIGVLRFWLPSVLERFADLM 59 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + S + +IS + L+ +++ A++++ P LL + + IQ + + + Sbjct: 60 KYVYSLPT-EWSNIS-VASLMLNMTWQAAQILAPVLLTTVAVAVAVNYIQVGSLFSTEAI 117 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN--YFTMLDFISANP 181 P R+SL EG KR++ + + KS +K+I +G + + ++ F L I+A Sbjct: 118 MPKLSRLSLIEGAKRMFGVRAWIQLAKSLLKVIAIGYFLYAVIRDHLEMFPALQQINALQ 177 Query: 182 HSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ L F + + L I+ L L W Y + L+MS +EIK+E KQ+ G+P Sbjct: 178 ATMFLGEILFELAWKIATAFLLISILDFLYQWWEYEK---NLRMSHEEIKEEYKQNEGDP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +KN K R+ +MME +A ++ITNPTHYA+AL+Y + DAP +VAKGQ+ +A Sbjct: 235 QLKNEMKKRQRAVAMRRMMEDLKKADVVITNPTHYAVALKYDPQKFDAPYVVAKGQDQVA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++++ A E+ I + E LAR+L+ QV I A+P YKAVA+++ Sbjct: 295 LRIKETARENRIIMMENKPLARTLYTQVEIGQAVPAELYKAVAEVL 340 >gi|261855327|ref|YP_003262610.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus c2] gi|261835796|gb|ACX95563.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus c2] Length = 379 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/360 (30%), Positives = 189/360 (52%), Gaps = 15/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 M+EN+ KTE PS K++ +A +G SRE SL + + +++L+ G + + Sbjct: 1 MAENENGQEKTEEPSEKRLREAREKGQVARSRELGSLALTAGSAIVFLVM----GGH-ML 55 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASR---LVIPGLLLFMMFGIGSYLIQRIP 116 S L + A +I + L+LS S ++P L ++ + S L+ Sbjct: 56 SRLEQMFRHAFTLSRAEIMDPATMFHRLALSFSEGFLALLPFFLAAVVLAVSSTLLVGGW 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTM 173 + + P F R++ G KR++S+ +LV +K+ K L+ I I L E F Sbjct: 116 NFSTQALAPQFNRLNPLSGFKRMFSMKSLVELLKTLAKFFLIAAI-AIGLFEAMEKDFVG 174 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L + + L A + + + L + + ++D+ + +++ L+M++QE+ DE Sbjct: 175 LGLMGL--EAGLARAGTLLSWSFLGLSLGLLVVAMIDVPFQMYEYKKGLRMTRQEMIDEY 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K+ G P +K + + + R + +MMEA A +IITNPTH+++AL+Y + AP++VA Sbjct: 233 KEVEGKPEVKQKIRQLQRQMAQRRMMEAVPTADVIITNPTHFSVALKYQPNSDAAPMVVA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A +RKIA +++P+FE P LARSLF V + AIP Y AVAQ++ ++ K Sbjct: 293 KGADEMAMTIRKIANANHVPLFESPQLARSLFAHVEVGDAIPSGLYVAVAQVLAYVFQMK 352 >gi|152983829|ref|YP_001349232.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PA7] gi|150958987|gb|ABR81012.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PA7] Length = 378 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/360 (29%), Positives = 197/360 (54%), Gaps = 15/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +A +G P SRE + + ++A LL + + + + Sbjct: 1 MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGA----DLAA 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLS---ASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + L+ S+ + E + + +L L S A++ + P LL+ ++ I + + Sbjct: 57 AMLRLMRSSFELSRETVLNTESMLQLLGASGYLAAQGLWPILLMLLVAAIVGPIALGGWL 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +++ ++P F R++ G+KR++S +L+ K+ +K ++V + + L+ + +L + Sbjct: 117 FSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALL-AL 175 Query: 178 SANP--HSILYHAFFTVRKVLIMI--LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 + P +IL+ A M LL IA + V W Q KL M+KQE++DE Sbjct: 176 AHQPLEQAILHSAQVVGWSAFWMACSLLLIAAVDVPYQIWDNRQ---KLMMTKQEVRDEY 232 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K S G P +K++ + + R + +MM A A ++ITNPTH+A+AL+Y AP+L+A Sbjct: 233 KDSEGKPEVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLA 292 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A K+R++A EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y K Sbjct: 293 KGNDFLALKIREVAREHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352 >gi|221635443|ref|YP_002523319.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM 5159] gi|221157327|gb|ACM06445.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM 5159] Length = 363 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 172/345 (49%), Gaps = 5/345 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSI--LACLIYLLFFFSPGIYSVTSDLHVLL 66 +TE + ++ ++A G P R A L S++ LA +L ++ ++ L Sbjct: 4 ERTERATPRRRQEARKRGQVP--RSADLTSALVLLAGAFFLPWYAGAAGQTLWDYLERAF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + R L IV L + +L +P L LF G+ S L+Q V +KP Sbjct: 62 SGPLPRDLTG-PDIVALAWASGATVLKLALPILGLFAAVGVASTLVQAGFVFAPAVLKPD 120 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++R+ G +R++S L K+ +KI +V + + + D A P +I Sbjct: 121 WRRIDPIAGFQRLFSRRGLFETGKALLKIAIVLAVTYPLIQRDLPRYADLTGAEPAAIAQ 180 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++R + + + L +LD G+ +L+M++ E+K+E++Q+ G+P IK R Sbjct: 181 AIGQSMRDLAVRVGAAYLALAILDYGFQRWDLEQRLRMTRHELKEELRQTEGDPEIKARI 240 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + R +MM +AT+++TNPTH A+ALRY APV+VAKG +A+++ I Sbjct: 241 RRLQRQMAMRRMMAQVPKATVVVTNPTHLAVALRYEPRSMRAPVVVAKGAGAVAERITAI 300 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A +H IP+ LA++L++ V + IP Y+AVA +I +Y Sbjct: 301 ARQHTIPVLRNQPLAQALYRTVEVGQEIPITLYEAVADIIAYVYR 345 >gi|157164760|ref|YP_001466322.1| flagellar biosynthesis protein FlhB [Campylobacter concisus 13826] gi|112800831|gb|EAT98175.1| flagellar biosynthetic protein FlhB [Campylobacter concisus 13826] Length = 357 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 194/352 (55%), Gaps = 22/352 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSI---LACLIYLLFFFSPGIYSVTSDLHVL 65 KTE + KKIEDA +GN P S++ S F ++ + L+ +L F + S L++ Sbjct: 7 EKTEEATPKKIEDAKKDGNVPKSQDLSGFVTLVIAIGVLLAMLNFMKDQVIS----LYIY 62 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + L + + ++ + A +++P + + GI + ++Q + + P Sbjct: 63 YSKFIGQPLT-LPTVKMIVVNTFGRALLMILPVCICVAVAGIIANVMQFGFIFTTKPITP 121 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F +++ +G+K ++S MK ++ + + ++I ++ L FI PH++ Sbjct: 122 NFGKINPLKGLKNLFS-------MKKAIESVKIVVKVSIVFGVGFYFFLQFIKELPHTLF 174 Query: 186 YHAFFTVRK------VLIMILLFIA-TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + F + +L+ ++LFI + + D+ Q++ L+MSKQEIKDE KQ G Sbjct: 175 FSMFDQLAWLKEKLIILVSVMLFILFVIGLADLLIVRFQYFKDLRMSKQEIKDEYKQMEG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R + + +MM+ +A ++ITNPTHYA+A+RY ++ ++AP+++AKG + Sbjct: 235 DPQVKGRIRQAQMRAAKRRMMQNIPQADVVITNPTHYAVAIRYDKSRDEAPIILAKGVDF 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A +++K+A E+ + I+E P LAR L++ ++ IP ++AVA+++ +Y Sbjct: 295 LALQIKKVAVENGVQIYENPPLARELYRVCEVDDTIPAHLFRAVAEVLSFVY 346 >gi|323210683|gb|EFZ95561.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 338 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 136/231 (58%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P F +++ GIKR++S +K+ +K LVG + L N+ M+ ++ +P Sbjct: 76 LQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHNWPQMMRLMAESPI 135 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P + Sbjct: 136 VAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 195 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA + Sbjct: 196 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALR 255 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 256 IREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 306 >gi|333004498|gb|EGK24027.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-272] gi|333017872|gb|EGK37178.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-227] Length = 397 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 193/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NP HY++AL+Y + + AP +VAKG L+ Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPNHYSVALQYDENKMSAPKVVAKGAGLVV 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|118133499|gb|ABK60543.1| flagellar biosynthetic protein FlhB [Clostridium novyi NT] Length = 575 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/351 (30%), Positives = 183/351 (52%), Gaps = 4/351 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G S+E + +L I LL S+ D+ Sbjct: 226 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 285 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L S ++T ++ + + +P +L M+ G+G+ L+Q + + +KP Sbjct: 286 FTNYLNMNLNSGSLQSIIVT-IAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 344 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G K+I+S+ ++ +K I ++G + L N+ +L S I+ Sbjct: 345 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 404 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + L + + ++D + Q+ ++MSKQEIK+E KQ G+P IK + Sbjct: 405 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 464 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM++ A+++ITNPTH A+AL+Y ++ AP LVAKG + IA K+++ Sbjct: 465 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 524 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353 IA E+ +PI E LAR +FK+V + S IP Y+AVA+ L+YK+ KK Sbjct: 525 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLKRKK 575 >gi|256022455|ref|ZP_05436320.1| flagellar biosynthesis protein FlhB [Escherichia sp. 4_1_40B] Length = 382 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ S+ L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 58 GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKCSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|71906378|ref|YP_283965.1| flagellar biosynthesis protein FlhB [Dechloromonas aromatica RCB] gi|71845999|gb|AAZ45495.1| Flagellar biosynthetic protein FlhB [Dechloromonas aromatica RCB] Length = 379 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 108/350 (30%), Positives = 182/350 (52%), Gaps = 6/350 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE P+ ++IE A +G P SRE + F L + F+ G + + L Sbjct: 5 EDSDLEKTEEPTGRRIEQAREQGQVPHSRELATF---LVLAVAGATFWMMGSWFMQRSLV 61 Query: 64 VLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 ++ R + D ++ L +S A + P L L ++ I V + Sbjct: 62 IMQKGFFVESRYMRDPDLMLPRLAEISGDALFVFSPLLGLLLLAAILPPFFLNAWVFSPK 121 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + P R++ G R++S N+L+ K+ +K +LVG + + + + + + Sbjct: 122 ALVPDLNRLNPLSGFGRMFSWNSLMELAKAVLKAVLVGGVAAMLIWKERDEIFGLLGEPL 181 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 L HA V ++++ + + V D+ + Q++ KLKMSK+E+K E+K+ G+P Sbjct: 182 EVGLAHAGHLVSFSFLILVATLVLVVVADVPFQLWQYFDKLKMSKEEVKQEMKEMMGDPH 241 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K R +S+ R +MM A +A +++TNPTHYA+AL Y QT AP +VAKG +A Sbjct: 242 VKGRIRSLQMQAARKRMMSAVPKANVVVTNPTHYAVALAY-QTGMGAPKVVAKGVGAVAL 300 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+++IA EH +PI E P LAR+L+K +++ IP Y AVA+++ IY Sbjct: 301 KIKEIANEHAVPIMEAPPLARALYKHSELDTEIPSALYNAVAEVLAYIYQ 350 >gi|310659024|ref|YP_003936745.1| flagellar export pore protein [Clostridium sticklandii DSM 519] gi|308825802|emb|CBH21840.1| flagellar export pore protein [Clostridium sticklandii] Length = 363 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 189/355 (53%), Gaps = 18/355 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + KTE S KK +D+ +G SRE A+L +S+LA F F + Sbjct: 15 EEKTEKASPKKKQDSRKKGQVMQSREINTAAALMASVLALKYSGGFMFRTITEATYFFRD 74 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121 +L + +++++ +++ + ++ + + +++ +I V NL Sbjct: 75 LLYTDILNESIGGYKILIYMIMYVTKAVVIVI-------GVGFVAAFITSKIQVGNLFTT 127 Query: 122 ---HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +KP +R++ EG KR++S+ + V +KS +KI +VG + L +N +L Sbjct: 128 ETLKIKP--ERLNPIEGFKRMFSMRSFVELVKSLLKIGVVGFVGYSYLAKNIGLVLKSQQ 185 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P Y F + I + I + +LD + + + LKMSKQEIK+E KQS G Sbjct: 186 LKPIQFSYMIFELSINLAIRMTFAITVIAILDFFYQRYDYEKNLKMSKQEIKEEYKQSEG 245 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R +MM+ +A +IITNPTH+A+A++Y + + +AP +VAKG+NL Sbjct: 246 DPQIKSKIKEKQRQAAMRRMMQEIPKADVIITNPTHFAVAIKYDEDKFEAPYVVAKGKNL 305 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA+ +++ A E NIP+ E LA++L+K+V I I P Y+AVA+++ +Y K Sbjct: 306 IAQNIKQKAREVNIPVVENKPLAQALYKEVEIGQMISPQLYEAVAEILAYVYSLK 360 >gi|171321732|ref|ZP_02910646.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] gi|171092980|gb|EDT38217.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] Length = 399 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 180/357 (50%), Gaps = 29/357 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 ++TEA + ++ E A EG SRE + F+ + A +P G ++ Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A +E ++ ++ +L L+A +G +LI + Sbjct: 68 DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAAL---------LAPMALGGWLISQ 118 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + + S K ++VG I I++ + +L Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLLMSLAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + S L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G NL+A ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349 >gi|209522058|ref|ZP_03270713.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] gi|209497504|gb|EDZ97704.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] Length = 411 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 104/350 (29%), Positives = 185/350 (52%), Gaps = 5/350 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE+ + ++++ A EG SRE S F+ +LA Y ++ S I ++ Sbjct: 3 GDSDLEKTESATPRRLQKAREEGQVARSRELSTFA-LLAAGFYGVWGMSGSIGDHFQNM- 60 Query: 64 VLLASAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L AS T D S ++ S ++P L L + + + + +L+ Sbjct: 61 -LRASLTFNHASTFDTSRMLIGAGAASREGLYALLPILALTGLAALLAPMALGGWLLSTK 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F R++ EG+ R++SIN + S K ++VG I ++ + L + Sbjct: 120 ALEPKFSRLNPIEGLSRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQPL 179 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + L ++ + M + + L LD+ + ++ KL+M+K+E+K E ++S G+P Sbjct: 180 NLALANSVHLIAVCCGMTVAGMFVLAALDVPYQLWTFHKKLRMTKEEVKREHRESEGDPH 239 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK + + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 240 IKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAA 299 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y Sbjct: 300 RIRELAAENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQ 349 >gi|162139705|ref|YP_877991.2| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium novyi NT] Length = 610 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 106/351 (30%), Positives = 183/351 (52%), Gaps = 4/351 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G S+E + +L I LL S+ D+ Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L S ++T ++ + + +P +L M+ G+G+ L+Q + + +KP Sbjct: 321 FTNYLNMNLNSGSLQSIIVT-IAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G K+I+S+ ++ +K I ++G + L N+ +L S I+ Sbjct: 380 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + L + + ++D + Q+ ++MSKQEIK+E KQ G+P IK + Sbjct: 440 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM++ A+++ITNPTH A+AL+Y ++ AP LVAKG + IA K+++ Sbjct: 500 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 559 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353 IA E+ +PI E LAR +FK+V + S IP Y+AVA+ L+YK+ KK Sbjct: 560 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLKRKK 610 >gi|123442794|ref|YP_001006771.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161312|ref|YP_004297889.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089755|emb|CAL12608.1| flagellar biosynthetic protein FlhB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605230|emb|CBY26728.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. palearctica Y11] gi|325665542|gb|ADZ42186.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860618|emb|CBX70915.1| flagellar biosynthetic protein flhB [Yersinia enterocolitica W22703] Length = 383 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 108/356 (30%), Positives = 185/356 (51%), Gaps = 13/356 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +K+E P++ K+E A +G P SRE +S+L L + G S+ L Sbjct: 3 EDSDADKSEEPTAHKLEKAREKGQIPRSRE---LTSMLMLGAGLAILWVSG-ESMARQLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118 ++A IS +L + + + +I + +F I + +P+L Sbjct: 59 AMIAQGLHFDHGLISDDKQMLRQIGMLLRQTLIALIPIFAGLVI---VAMAVPMLLGGVL 115 Query: 119 -NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + +K KR+S G+KR++S L +K+ +K LVG + I L N+ M+ + Sbjct: 116 FSGESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLM 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +A P + L A + ++++L + + D+ + KL+M+KQEI+DE K Sbjct: 176 AAPPVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +T+ AP ++AKG Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 296 AVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|172057870|ref|YP_001814330.1| flagellar biosynthesis protein FlhB [Exiguobacterium sibiricum 255-15] gi|171990391|gb|ACB61313.1| flagellar biosynthetic protein FlhB [Exiguobacterium sibiricum 255-15] Length = 363 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/356 (29%), Positives = 192/356 (53%), Gaps = 22/356 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSP--G---IYSVTSDL 62 KTE S +K +D+ +G +++ A L SS++ ++L LFFF P G + + + L Sbjct: 16 EKTEKASPRKRDDSRKKGQ--VAKSADLTSSLMLFGMFLILFFFGPFLGKRFVMVLENGL 73 Query: 63 --HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + +++++ ++ +L + + LV P + ++ GI +Q +L+ Sbjct: 74 SAQTVLVAVEEGRIQEV--MIEMLVQMGI----LVAPFFVTAVVIGILGNFVQIGALLST 127 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS-- 178 ++P R++ +GIKRI S+ L+ F+KS K++++G L N + S Sbjct: 128 ESIQPKLDRINPLQGIKRIVSMKALIEFLKSVFKLLVIGATSGTVLWNNKVEISRLTSEP 187 Query: 179 -ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + +I+ H F + I + + + L VLD + + ++MSKQ++KDE K + Sbjct: 188 IGDALAIIGHLTFLLG---ISVSIALIVLAVLDFAYQKFDFEKSIRMSKQDLKDEHKNTE 244 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK + K R +MM+ A ++ITNPTHYA+A++Y ++ AP++VAKG + Sbjct: 245 GDPQIKGKIKQQQREMAMRRMMQEIPNADVVITNPTHYAVAIQYDDGKHAAPIVVAKGVD 304 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R+ A IPI E LAR+LF + I A+ FY+A+A+ + +Y K Sbjct: 305 AVAFRIREKATAAEIPIIENRPLARALFAKSEIGMAVDESFYQALAETLAFVYQMK 360 >gi|268678882|ref|YP_003303313.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum DSM 6946] gi|268616913|gb|ACZ11278.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 116/354 (32%), Positives = 191/354 (53%), Gaps = 26/354 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSIL----ACLIYLLFFFSPGIYSVTSDLHV 64 KTE +SKKIEDA EGN P S++ S F +++ A L +L F S IY + Sbjct: 6 EKTEEATSKKIEDARKEGNVPKSQDMSAFVTLVVALGAFLAWLSFIESRIIY-LYHYYQS 64 Query: 65 LLASATQRKLEDISHIVFLLTHLSL-SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L+ + E + F ++ +SL +VIP L + GI + ++Q + + Sbjct: 65 LIGT------EITKEVTFQISLISLREVVFMVIPLALAVAIAGILANVMQTGFLFTTKPL 118 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P+F ++ +G K ++S+ L+ +K+ +K+ +V I +YF + F P Sbjct: 119 MPNFGKLDPIKGFKNLFSLKKLIETVKTLLKVSVVMGI-------SYFFLWSFTKELPTV 171 Query: 184 ILY-----HAFFTVR--KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 I + A+ + + +IL+ + L + D+ ++ +L+MSKQE+KDE KQ Sbjct: 172 IYFPLPDQMAWLKEKMLILAAVILIILLVLALADLMLVRFNYFKELRMSKQEVKDEYKQM 231 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK + + I R +MM+ A ++ITNPTHYA+A+RY Q + AP ++AKG Sbjct: 232 EGDPKIKAKIRQIQMQMTRKRMMQEIPGADVVITNPTHYAVAIRYHQDKEAAPKVIAKGT 291 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +L+A ++++IA H+I I E P LAR L+K+ I IP YKAVA+++ +Y Sbjct: 292 DLVALRIKEIALNHHIQIVENPPLARELYKKCNIGELIPENLYKAVAEVLAFVY 345 >gi|188991600|ref|YP_001903610.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. campestris str. B100] gi|167733360|emb|CAP51561.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 376 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 177/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI S Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGTGVFALMLMARGIGDGAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++ Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA A +++ NPTHYA+AL+Y + APV+VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQ 350 >gi|212709483|ref|ZP_03317611.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM 30120] gi|212687821|gb|EEB47349.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM 30120] Length = 383 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 180/366 (49%), Gaps = 36/366 (9%) Query: 4 NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-------------- 48 +D D KTE P+ K + A ++G S+E S +LA + L Sbjct: 2 SDESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLATQLRQIM 61 Query: 49 ---FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105 F F T + L L + I+ L + +SAS LV G LLF Sbjct: 62 RQGFIFDGHYLQNTGLMLSYLGRVVSEALFALLPIIGGLALVGISASSLV--GGLLF--- 116 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 N +K K+++ +G+KRI+S+N L K+ +K + VG +I Sbjct: 117 -------------NSKLIKFDLKKLNPIKGLKRIFSMNALSELFKAILKCVFVGLGASIF 163 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 L +++ ++L + P + L +A V +I+ + + D+ + + KL+MS Sbjct: 164 LWQSWPSLLHLVMEPPTTALANALEKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMS 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 +QEIKDE KQ G+P IK + + R+ R++MM A +I+TNPTHYA+AL+Y + Sbjct: 224 RQEIKDEFKQQEGDPHIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKK 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP ++AKG +IA+++++I EH I E P LAR+L++ I +IP Y AVA++ Sbjct: 284 MGAPKVLAKGAGVIAQRIKEIGAEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEV 343 Query: 346 IYKIYH 351 + +Y Sbjct: 344 LAWVYQ 349 >gi|2494575|sp|Q56886|FLHB_YEREN RecName: Full=Flagellar biosynthetic protein flhB gi|793892|emb|CAA88185.1| flhB [Yersinia enterocolitica] Length = 383 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 108/356 (30%), Positives = 185/356 (51%), Gaps = 13/356 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +K+E P++ K+E A +G P SRE +S+L L + G S+ L Sbjct: 3 EDSDADKSEEPTAHKLEKAREKGQIPRSRE---LTSMLMLGAGLAILWVSG-ESMARQLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118 ++A IS +L + + + +I + +F I + +P+L Sbjct: 59 AMIAQGLHFDHGLISDDKQMLRQIGMLLRQTLIGLIPIFAGLVI---VAMAVPMLLGGVL 115 Query: 119 -NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + +K KR+S G+KR++S L +K+ +K LVG + I L N+ M+ + Sbjct: 116 FSGESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLM 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +A P + L A + ++++L + + D+ + KL+M+KQEI+DE K Sbjct: 176 AAPPVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +T+ AP ++AKG Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 296 AVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|158320532|ref|YP_001513039.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii OhILAs] gi|158140731|gb|ABW19043.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii OhILAs] Length = 362 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 110/361 (30%), Positives = 189/361 (52%), Gaps = 33/361 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY---LLFFFSPGIYSVTSDLHV 64 + KTE + KKI+DA +GN S+E + +LA I F + ++T ++ Sbjct: 12 EEKTEQATPKKIKDAREKGNVLQSKEVNSALILLAIFIIINAFATFIGVSLLNMTRAVYT 71 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVI-------PGLLLFMMFG-------IGSY 110 SA +I F + +L + + +L+I P L ++ G +G Sbjct: 72 EFLSA---------NIAFSVKNLQILSIKLMIYFFIAVGPIALTSLVVGLISSYAQVGVL 122 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 L + + +LN + P EG K+++S+ ++V +K+F+++ ++G I + Sbjct: 123 LTSKPLMFDLNKINPI-------EGFKKMFSMRSVVELLKAFIRLGVIGYISYDYVKGQV 175 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 +L+ + SIL + I + + L VLD + +++ LKMSKQEIK Sbjct: 176 GVILETTGMDISSILKAIMSMTVDIGIKAGIALIALAVLDYYYQRYEYNKNLKMSKQEIK 235 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 +E KQ+ GNP IK++ K R +MM+ A +IITNPTH+A+ ++Y E DAP Sbjct: 236 EEYKQTEGNPQIKSKIKEKQRQMAMRRMMQDVPSADVIITNPTHFAIGIKYDLNEFDAPK 295 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++AKGQ+LIA+ ++KIA E+N+ + E LAR+L+ V + +PP Y+AVA+++ +Y Sbjct: 296 VIAKGQDLIAQNIKKIALENNVTVVENKPLARALYDSVEVGQFVPPDLYQAVAEVLAYVY 355 Query: 351 H 351 Sbjct: 356 R 356 >gi|21231358|ref|NP_637275.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768589|ref|YP_243351.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. campestris str. 8004] gi|21113019|gb|AAM41199.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573921|gb|AAY49331.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 376 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 177/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI S Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGTGVFALMLMARGIGDGAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++ Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNRP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA A +++ NPTHYA+AL+Y + APV+VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQ 350 >gi|220903612|ref|YP_002478924.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867911|gb|ACL48246.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 359 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 112/354 (31%), Positives = 186/354 (52%), Gaps = 18/354 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + K+I EGN P S+E S+L + L + P ++ L+ Sbjct: 9 SKTEEATPKRIRKQRGEGNVPKSQELGKAVSLLGGMSILYAWIGPMSEAIKKLFRHFLSH 68 Query: 69 ATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK--- 124 A + + V+ LT L + ++++P LL + S L QR+ V L K Sbjct: 69 AWE--FDPNPENVYSLTLELMIEVCKIIMPILL---TLAVLSMLAQRLQVGKLWTTKVFK 123 Query: 125 PSFKRVSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P +R ++ +GIK+ ++S ++ +KS + +++ TI + + Y L A Sbjct: 124 PKLQRFNIFKGIKQMLFSPQTILRTIKSLLFSLILSTIPAWIIYKEYQNFLPMYYATTEG 183 Query: 184 I----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + L AF V LI IL+ A D+ S + + +KM+K E+KDE KQ+ G+ Sbjct: 184 VAVYMLQMAFKLVSYALIPILIIAA----FDVWQSRYSYKENMKMTKDEVKDEHKQADGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K++Q+ + +M++ +A ++ITNPTH A+ALRY TE APV++AKG + + Sbjct: 240 PVVKSQQRKKMMEAMSKRMLQDVPKADVVITNPTHIAVALRYNATEAPAPVVLAKGADHL 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K+++ A EHN+PI E LAR+L+K + IP YKAVA ++ I+ K Sbjct: 300 AEKIKQAAREHNVPIRENVPLARALYKSAEVGDMIPEELYKAVATVLAAIWKLK 353 >gi|187478176|ref|YP_786200.1| flagellar biosynthesis protein FlhB [Bordetella avium 197N] gi|115422762|emb|CAJ49290.1| flagellar biosynthetic protein [Bordetella avium 197N] Length = 380 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 184/354 (51%), Gaps = 13/354 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ KTEA S +++E A EG SRE + F +LA + L+ P +Y S + Sbjct: 3 DDSDLEKTEAASPRRLEKAREEGQIARSRELTTFL-MLAAGVGGLWLVGPSLYRGLSGVM 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLN 121 R D + +V A ++P G+L+ +GS ++ + V + Sbjct: 62 RDGMGFDPRITHDTTAMVNQAVIGFGQAIWAILPVFGILVVAAL-LGSVMLGGL-VFSGK 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++ +++ G+KRI+S LV +K+ K +LVG + + + ML + P Sbjct: 120 PLEFKASKLNPLSGLKRIFSSQTLVELIKASAKALLVGGVAGWVIWRYHDEMLGLMHVPP 179 Query: 182 HSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + L A K++++ FI + + ++D+ W KL+MSK++++ E K+S Sbjct: 180 PAALASAL----KLVVLCCAFIVSSLMLVVLIDVPWQIWSHLKKLRMSKEDVRQEHKESE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK R + R+ R +MM RA +++TNPTHYA+AL Y ++ AP ++AKG Sbjct: 236 GDPHIKARIRQQQRAAARRRMMSQVPRADVVVTNPTHYAVALSYDESGGGAPTVIAKGTG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 L+A ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ Sbjct: 296 LVAARIRELAAEHRIPTLEAPPLARALHQHVELGHEIPAALYTAVAEVLAWVFQ 349 >gi|15596646|ref|NP_250140.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAO1] gi|107100883|ref|ZP_01364801.1| hypothetical protein PaerPA_01001913 [Pseudomonas aeruginosa PACS2] gi|116049394|ref|YP_791803.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa UCBPP-PA14] gi|218892678|ref|YP_002441547.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa LESB58] gi|254234548|ref|ZP_04927871.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719] gi|254239799|ref|ZP_04933121.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192] gi|296390184|ref|ZP_06879659.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAb1] gi|313106448|ref|ZP_07792679.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016] gi|9947400|gb|AAG04838.1|AE004574_9 flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PAO1] gi|115584615|gb|ABJ10630.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa UCBPP-PA14] gi|126166479|gb|EAZ51990.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719] gi|126193177|gb|EAZ57240.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192] gi|218772906|emb|CAW28718.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa LESB58] gi|310879181|gb|EFQ37775.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016] Length = 378 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 109/363 (30%), Positives = 194/363 (53%), Gaps = 21/363 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +A +G P SRE + + ++A LL + + + Sbjct: 1 MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGA----DLAG 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSA---SRLVIPGLLLFMMFGIGSYLIQRIPV 117 L L+ S + E + +L L SA ++ + P LL+ ++ I + + Sbjct: 57 ALLRLMRSNFELSRETAMNTESMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWL 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +++ ++P F R++ G+KR++S +L+ K+ +K ++V + + L+ + D + Sbjct: 117 FSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADR----DAL 172 Query: 178 SANPHSILYHAFF-TVRKV------LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 A H L A +VR V + LL IA + V W Q KL M+KQE++ Sbjct: 173 LALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQ---KLLMTKQEVR 229 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE K S G P +K++ + + R + +MM A A ++ITNPTH+A+AL+Y AP+ Sbjct: 230 DEYKDSEGKPEVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPL 289 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 L+AKG + +A K+R++A EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y Sbjct: 290 LLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVY 349 Query: 351 HKK 353 K Sbjct: 350 QLK 352 >gi|320116065|ref|YP_004186224.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319929156|gb|ADV79841.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 363 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73 Query: 68 --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + IPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|88800470|ref|ZP_01116034.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp. MED297] gi|88776800|gb|EAR08011.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp. MED297] Length = 378 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 106/362 (29%), Positives = 185/362 (51%), Gaps = 23/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P+ +K+E A +G+ S+E + + ++ I L F G T+ Sbjct: 1 MAEQDTSQEKTEEPTPRKLEKAKEDGDIARSKELNTSAILIVSAICFLVF---GRMMGTT 57 Query: 61 DLHVL--LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLI 112 + ++ S R D+ ++ ++ A ++P ++ G+G + Sbjct: 58 MMRIMEFCFSFDPRASWDVIVAGEYVSVVAGEALLSIVPLFGFLLLAALFAPIGLGGW-- 115 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTEN 169 + + P R++ GIKR++S+N+LV +K + K+I+V T ++ ISL Sbjct: 116 ----NFSTKALAPKGSRMNPLSGIKRMFSMNSLVELLKGWGKVIVVATAAILVLISLKNE 171 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + +M + S + HA + +++ + ++DI + + KL+M+ QEI Sbjct: 172 FLSM---VFQPTESAITHAVEVIAWSFLLLAASTVLIAIVDIPFQIYSHTKKLRMTMQEI 228 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E K + G P +K + K + R +MM A +IITNPTHYA+AL+Y AP Sbjct: 229 KEEYKNTEGKPEVKAKIKQLQREMANRRMMSDVPEADVIITNPTHYAVALKYDPNAMPAP 288 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 ++VAKG + +A K+R+I E+++P+ E P+LARS++ I IP Y AVAQ++ I Sbjct: 289 LMVAKGVDEVAFKIREIGQEYDVPVLEMPALARSIYHHTRIGDEIPEGLYVAVAQVLAYI 348 Query: 350 YH 351 Y Sbjct: 349 YQ 350 >gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium ljungdahlii DSM 13528] gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium ljungdahlii DSM 13528] Length = 606 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 102/354 (28%), Positives = 192/354 (54%), Gaps = 14/354 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK D+ +G S+E L ++LA + + G Y TS + Sbjct: 261 AKDDKTEEATPKKKSDSRKKGQIARSKEIGLTMTLLASTLVIAVL---GGYVGTSLGSTM 317 Query: 66 LASA-----TQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 +A T ++ I+F+ + +++ + +P L + G+ + ++Q ++ Sbjct: 318 VAFLNDYINTSLNYSSVNKIMFITIWRIAIVFLPIAVPILAI----GVLANMVQTRGLIT 373 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP F +++ G KR++S +++ +K + +VG + + +NY +L+ Sbjct: 374 FETLKPDFSKLNPISGFKRMFSARSVMELLKDTAIVSIVGYVGYKFIKDNYMYILNLGQL 433 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + I L + + +LD + +Q+ L+MSKQEIK+E KQ G+ Sbjct: 434 DSRAVAKAIGSLAVGIFFRITLIMLIIAILDYMFQRYQYNKDLRMSKQEIKEEFKQDEGD 493 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK +++ R +MM+ +AT+++TNPTH A+AL+Y + +N APVLVAKG + + Sbjct: 494 PQIKGKRRQKQRELAMRRMMQEVPKATVVVTNPTHVAVALKYEEGQN-APVLVAKGLDAV 552 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+++IA ++++PI E LAR ++K+V I+ IP Y+AVA+++ +Y + Sbjct: 553 ALKIKEIAKDNDVPIIENRPLARLIYKEVEIDMEIPAEMYQAVAEILALVYKMR 606 >gi|167037650|ref|YP_001665228.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856484|gb|ABY94892.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 360 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 11 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70 Query: 68 --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 71 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 130 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 131 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 310 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + IPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 311 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358 >gi|229918645|ref|YP_002887291.1| flagellar biosynthesis protein FlhB [Exiguobacterium sp. AT1b] gi|229470074|gb|ACQ71846.1| flagellar biosynthetic protein FlhB [Exiguobacterium sp. AT1b] Length = 364 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 189/354 (53%), Gaps = 19/354 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGI----YSVTSDL- 62 KTE + +K ED+ +G +++ A L + L + +L FF P I ++ SDL Sbjct: 18 EKTEKATPRKREDSRKKGQ--VAKSADLTGAFALFAMFLMLSFFGPVIGQQLLTLISDLL 75 Query: 63 --HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LL + T + ++ L L ++ P ++ ++FGI +Q + +L Sbjct: 76 SPEYLLFNVT-------GGMSDMVVDLMLRVGLILAPFFIVAVVFGILINYLQIGTLFSL 128 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179 ++P +R+ +G+KRI S+ +V F+KS K++++ T L +N + + Sbjct: 129 EAIQPKLERIDPIKGVKRIVSMKAVVEFLKSLFKLLIILTTAVAVLWKNQKELSRMAVEQ 188 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 SI+ A T+ L + + +A L LD + + ++MSKQ+IKDE K + G+ Sbjct: 189 VRESIVALASITIELGLWVSVALLA-LAFLDFFYQRFDFEKSIRMSKQDIKDEYKNTEGD 247 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK++ K R +MM+ A ++ITNPTHYA+ +RY T++ AP++VAKG + + Sbjct: 248 PLIKSKIKQQQREMAMRRMMQEIPNADVVITNPTHYAVVIRYDDTKDFAPLVVAKGVDRV 307 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +R +A EH++ I E LAR+L+ Q+ I + FY+A+A+++ +Y K Sbjct: 308 AFHIRDVAKEHDVAIVENKPLARALYAQIDIGEVVDESFYQAIAEVLAFVYQMK 361 >gi|170702808|ref|ZP_02893660.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria IOP40-10] gi|170132277|gb|EDT00753.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria IOP40-10] Length = 399 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 29/357 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 ++TEA + ++ E A EG SRE + F+ + A +P G ++ Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A +E ++ ++ +L L+A +G +LI + Sbjct: 68 DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAAL---------LAPMALGGWLISQ 118 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + S L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G NL+A ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349 >gi|168704083|ref|ZP_02736360.1| flagellar biosynthesis protein FlhB [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/346 (27%), Positives = 177/346 (51%), Gaps = 2/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ ++KTE P+ ++ E+A +G P S E + S +L + L + P +++ Sbjct: 1 MAEDVDQESKTEDPTPRRREEARRQGQVPFSAEL-VGSLVLVAGVLGLRYLGPDLWATMI 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + R+ + LL +L ++P L + G+G+ + Q LN Sbjct: 60 TVFRADLPRVGREEFGTAEAAELLGRTALRMIGAMLPFFGLLLAVGVGASVAQVGFQLNT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P+ +++ G+ R++S+ ++V + + K++ + + L + Sbjct: 120 EKLEPNLDKLNPVGGLGRLFSLGSVVRGLLTVAKVLALAGVAYYVLNGRGGLIASIGMGR 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 A+ V ++ + + +A + V D + +++ L M+K+E+K E+KQ G+P Sbjct: 180 IGEAAPVAWALVMRLALYLAGAVALVAVFDYAYQRYKFEQSLMMTKEELKQELKQEEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + IAR R + KM+ +AT+++TNPTHYA+ALRY + APV+VAKG+ A Sbjct: 240 HVKARVRQIARERTKRKMLSEVPKATVVVTNPTHYAVALRYDSNRDSAPVVVAKGKGAFA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++ K A E +P+ E P LAR+L V IP ++AVA+++ Sbjct: 300 LRIAKRARESGVPVLERPPLARALH-SVREGQQIPSALFRAVAEVL 344 >gi|330953765|gb|EGH54025.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae Cit 7] Length = 378 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-DIALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|66046670|ref|YP_236511.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. syringae B728a] gi|63257377|gb|AAY38473.1| Flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. syringae B728a] gi|330899444|gb|EGH30863.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 378 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-DIALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|268589991|ref|ZP_06124212.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131] gi|291314710|gb|EFE55163.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131] Length = 383 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 110/354 (31%), Positives = 187/354 (52%), Gaps = 12/354 (3%) Query: 4 NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----IYS 57 +D D KTE P+ K + A ++G S+E S +LA + L + S G + Sbjct: 2 SDESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVS--LLWLSGGHLAAQLRQ 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 +T + Q IS++ +++ +L A VI GL L GI + + V Sbjct: 60 ITRQGFIFDGHYLQNTGLMISYLGRVVSE-ALFALLPVIGGLALV---GISASSLVGGLV 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 N +K K+++ +G+KRI+S+N L K+ +K + VG I L +++ ++L + Sbjct: 116 FNSKLIKFDLKKLNPIKGLKRIFSMNALSELFKAVLKSLFVGLGAFIFLWQSWPSLLHLV 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ Sbjct: 176 MESPVTALSNALQKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP ++AKG Sbjct: 236 GDPQIKAKIRQQQRAIARNRMMADVPNADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++A+++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y Sbjct: 296 VLAQRIKEIGEEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQ 349 >gi|150020741|ref|YP_001306095.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis BI429] gi|149793262|gb|ABR30710.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis BI429] Length = 377 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 193/356 (54%), Gaps = 17/356 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE + ++ + A EG PISRE + + LA ++ F I + S + Sbjct: 29 ADPDKTEKATPRRRQKAREEGQVPISRELTSGFTFLAAVLGFAFLGRGIILGLESAVAFF 88 Query: 66 --LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF----MMFGIGSYLIQRIPVLN 119 L S + D+ F +A + +I L++F M+ GI +Q + Sbjct: 89 AELPSYDTININDLGIYAF-------NAFKGLIIDLVIFVGIIMVTGIAVGSLQTKFLFT 141 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-- 177 +K F +++ G+KR++S+ +L +KS +K+++VG + + + N+ ML I Sbjct: 142 FKSLKLDFSKINPINGLKRMFSLRSLFELLKSILKLVIVGYVGYLVIKSNWNKMLLAIDK 201 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S S+L + I LFI +++ D +S +++ ++M+KQE+K+E K+ Sbjct: 202 SVKDGSLLIWDITFELLIKCGIALFI--VSIADYFFSRYEYEKNIRMTKQEVKEEFKEVE 259 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK +Q+ I H+MM+ AT++ITNPTH+A+A++Y E + P++VAKG + Sbjct: 260 GNPEIKRKQREIMMQYSMHRMMQEVPEATVVITNPTHFAVAIKYEVDEMEVPIVVAKGMD 319 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K++K+A E+N+PI P LAR L+ V + IP FY+AVA+++ +Y K Sbjct: 320 NLAEKIKKVARENNVPILRNPKLARELYFNVDVGDEIPEKFYRAVAEVLAYVYSLK 375 >gi|161523355|ref|YP_001578367.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC 17616] gi|189351872|ref|YP_001947500.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC 17616] gi|160340784|gb|ABX13870.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans ATCC 17616] gi|189335894|dbj|BAG44964.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] Length = 399 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/359 (28%), Positives = 179/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 ++TEA + ++ E A EG SRE + F+ + A +P G ++ Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A LE ++ ++ +L +A +G +LI Sbjct: 68 DRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAAL---------LAPMALGGWLI-- 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + F R++ G+ RI+SI + S K ++VG I +++ + +L Sbjct: 117 ----SPKTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351 >gi|311105926|ref|YP_003978779.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8] gi|310760615|gb|ADP16064.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8] Length = 384 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 177/343 (51%), Gaps = 1/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTEA S +++E A EG SRE F +LA + ++ +Y + + Sbjct: 8 EKTEAASPRRLEKAREEGQIARSRELGTFM-MLAAGVGAIWAGGSSLYRTLTGVLRNGLG 66 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 QR + D +V A +++P L + + S ++ V++ ++ +F Sbjct: 67 FDQRIVADPGVMVERAVEGFGQALLVLLPIFGLLAVIAVLSSVLLGGLVISGKPLQFNFS 126 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S G+KR++S +V +K+ K +LVG + + + ML + P + L A Sbjct: 127 KLSPISGVKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLSLMHVAPSAALVKA 186 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V I+ + + +LD+ W KL+MSK++++ E K+S G+P +K R + Sbjct: 187 LTLVAMCCAFIVASLIVIVMLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDPHVKARIRQ 246 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R R +MM +A +++TNPTHYA+AL+Y + ++ AP ++AKG LIA K+R++A Sbjct: 247 QQRQAARRRMMSEVPKADVVVTNPTHYAVALKYDEEKSGAPRVLAKGTGLIAAKIRELAA 306 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E+ IP E P LAR+L + V I IP Y AVA+++ ++ Sbjct: 307 ENRIPTLEAPPLARALHQHVEIGQEIPAELYTAVAEVLAWVFQ 349 >gi|330502779|ref|YP_004379648.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] gi|328917065|gb|AEB57896.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] Length = 378 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 193/362 (53%), Gaps = 23/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +K+E P+ K++E++ +G S+E + + L + L+ F G Y Sbjct: 1 MAESESGADKSEEPTGKRLEESRKKGQIARSKELNTLAVTLTGTVALIIF---GAYMGNV 57 Query: 61 DLHVLLASATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + ++ + + + + + S ++LL A V P LL ++ + + + Sbjct: 58 LMDIMRGNFSLPREVLMSERSMALYLLAS-GKEALLAVQPFLLALLIASVAGPIALGGWL 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISLTENYFTMLD 175 + ++P R++ G+KR++S+ LV +K+ K +IL ++ +++ ++ + Sbjct: 117 FSAEALQPKASRMNPLAGLKRMFSVQALVELVKALAKFLVILAVALVVLAIDQDDLLAIA 176 Query: 176 FISANP---HS---ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 P HS + + AF+ L L+ IA + V WS+ Q KL M+KQE+ Sbjct: 177 NEPVEPAILHSLRVVGWSAFW-----LSCGLILIAAVDVPFQLWSHKQ---KLMMTKQEV 228 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE K + G P +K R + + R +MM+A +A ++ITNPTH+A+AL+Y + AP Sbjct: 229 RDEYKDTEGKPEVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAP 288 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +L+AKG + +A K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ + Sbjct: 289 MLLAKGGDFLALKIREIAQEHQVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYV 348 Query: 350 YH 351 Y Sbjct: 349 YQ 350 >gi|269138573|ref|YP_003295273.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202] gi|267984233|gb|ACY84062.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202] gi|304558582|gb|ADM41246.1| Flagellar biosynthesis protein FlhB [Edwardsiella tarda FL6-60] Length = 440 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/350 (31%), Positives = 177/350 (50%), Gaps = 11/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ +IE A +G P SRE +SIL L G Y + L V++A Sbjct: 60 EKTEDPTPHRIEKAREKGQIPRSRE---LTSILMLATGLAILLLGGEY-LARALAVMIAQ 115 Query: 69 ATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + ++ L L A ++P LL M+ G + ++ + + + +K Sbjct: 116 GLHFDHLLLSNDRQMLIQLGMLLQQAVAALMPVLLGLMLVGWCAPMLIGGFLFSPSSIKC 175 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ G KR++S L +K +K LVG + L + ML I+ + Sbjct: 176 DLNRLNPLSGFKRMFSSQVLAELLKGILKATLVGWVCGWFLLHYWPRMLRLITEPTLDAM 235 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYGNPIIK 243 A V ++++L + + D+ Y W SKL+M+KQEIKDE K+ G+P +K Sbjct: 236 GDALHLVGMCGLLVVLGLLPMVGFDV--FYQVWSNLSKLRMTKQEIKDEFKEQEGDPHVK 293 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA+++ Sbjct: 294 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIAQRI 353 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K Sbjct: 354 KALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 403 >gi|221202387|ref|ZP_03575420.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2M] gi|221208974|ref|ZP_03581970.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2] gi|221171096|gb|EEE03547.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2] gi|221177801|gb|EEE10215.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2M] Length = 399 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/359 (28%), Positives = 178/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 ++TEA + ++ E A EG SRE + F+ + A P G ++ Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQAMLRGAFAF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A LE ++ ++ +L +A +G +LI Sbjct: 68 DRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAAL---------LAPMALGGWLI-- 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + F R++ G+ RI+SI + S K ++VG I +++ + +L Sbjct: 117 ----SPKTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351 >gi|188533614|ref|YP_001907411.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99] gi|188028656|emb|CAO96518.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99] Length = 383 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 186/351 (52%), Gaps = 7/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE+P++ ++E A EG P SRE +SIL + L + G + + L Sbjct: 3 QDSDQEKTESPTAHRLEKAREEGQIPRSRE---LTSILMLIAGLSILWGGGEW-MGRKLG 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LLA + D S ++ + +L A V+P + ++ I + ++ VL+ Sbjct: 59 ALLADGLVFNHSMVSDTSQMLRQIANLLQQAVLAVLPMMFGLVVVAIAAPMLLGGLVLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ ++ S + +K+ +K LV + + + ++ ML ++ + Sbjct: 119 KAIKFDLGKMNPIKGLAKLVSAQSAAELLKAVLKATLVSIVCGLYIWHHWAEMLRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PITALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++ E+ IPI E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 299 LRIRELGAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQ 349 >gi|330445379|ref|ZP_08309031.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489570|dbj|GAA03528.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 376 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/359 (27%), Positives = 196/359 (54%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D + +TE + +++E A +G P SRE + + +++ + L++F G+ Sbjct: 1 MSDSDGQE-RTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWF-GEGLSKALG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG--IGSYLIQRIPVL 118 + + S T+ + D+ + F++ ++ L + +L+F+ F IG+ + + Sbjct: 59 QIMTAMFSLTREDIFDLDRL-FVIIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVR-F 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM-L 174 + P F +++ GIKR++ + + V +KS +K+ LVG++ + S E++F + + Sbjct: 117 SPQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSSLEDFFQLSI 176 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + AN +HA + +++I + + +D+ + + +LKM+KQEIKDE K Sbjct: 177 EVFPAN----YFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G P +K R + + R + +MM +A ++ITNP H+++ALRY + APV++AK Sbjct: 233 DSEGKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A K+R++A +HNI I LAR+++ + IP + AVAQ++ ++ K Sbjct: 293 GGDHLALKIREVANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351 >gi|307720616|ref|YP_003891756.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM 16294] gi|306978709|gb|ADN08744.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM 16294] Length = 350 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 113/356 (31%), Positives = 189/356 (53%), Gaps = 30/356 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHV 64 KTE P+ KKIEDA EGN P S++AS LF +IL L+ F I+ + Sbjct: 6 EKTEEPTPKKIEDARKEGNVPKSQDASGVLTLFVAILGVLMLFPFMAEHMIHLFRYYFSL 65 Query: 65 LLASATQRKLEDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 + + DI+ + FLL L L A+ + I G++ + L Q + Sbjct: 66 IGMPVDKLFAMDIAIVTIKEFLLMVLPL-ATAVAISGVI--------AALAQFGFLFTTK 116 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + P FK++ +G K ++S+ L+ +K +K + T+ + +F FI P Sbjct: 117 AIMPDFKKIDPIKGTKNLFSLKKLIEGVKVTLK-----SFTTLGVGFIFF--FYFIQELP 169 Query: 182 HSILY--HAFFTVRKVLIMILLFIATLTVLDIGWSY-----HQWYSKLKMSKQEIKDEIK 234 L+ H K ++I+ F+ + Q++ LKMSKQEIKDE+K Sbjct: 170 TVALFGLHDQLMWLKDKMIIIAFVMLFIIFIFAIIDVIIVRKQYFDGLKMSKQEIKDEMK 229 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P+IK++ + I + +MM A ++ITNPTHYA+A++Y ++++ AP++VAK Sbjct: 230 NMEGDPLIKSKIRQIQMEASKKRMMAEVPNADVVITNPTHYAVAIKYDESKSHAPLVVAK 289 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 G + IA++++KIA E+++ I + P LARSL+K+V ++ IP + AVA+++ +Y Sbjct: 290 GMDNIAQQIKKIARENSVHIVQNPPLARSLYKEVDVDKPIPEALFSAVAEVLAYVY 345 >gi|109899339|ref|YP_662594.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica T6c] gi|109701620|gb|ABG41540.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica T6c] Length = 374 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 180/362 (49%), Gaps = 33/362 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIYSVTSDL 62 + KTE P+SKKI D+ +G S+E S +FS+ A I + + IY VT Sbjct: 5 NEKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSA--AAFIMMGGQIAKAIYLVTQRT 62 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN- 121 L ++ + D +H+ SA V ++L+M+ + + I + N Sbjct: 63 FTL----SRDETYDFTHMF----QAWGSAIETVATPVMLYMVIITAAGIYGNIALGGYNF 114 Query: 122 ---HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 P +++ G KR++ +N LV +K+ K+I+V + Y ML F Sbjct: 115 TWQGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVV-------MGMAYVAMLVFKD 167 Query: 179 ANPH-------SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 H L+HA + +M+ + + D+ + ++ ++KMSKQE+KD Sbjct: 168 EALHLDLELYPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKD 227 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G+P +KNR + + ++MM+ A +++TNPTHY++AL+Y Q APVL Sbjct: 228 ENKNAEGDPQVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVL 287 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + +A +RKIA H +PI P LAR+++ + S IP + AVAQ++ ++ Sbjct: 288 VAKGVDEMAMHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPAKLFMAVAQILAYVFQ 347 Query: 352 KK 353 K Sbjct: 348 LK 349 >gi|332305672|ref|YP_004433523.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173001|gb|AEE22255.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 374 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 180/362 (49%), Gaps = 33/362 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIYSVTSDL 62 + KTE P+SKKI D+ +G S+E S +FS+ A I + + IY VT Sbjct: 5 NEKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSA--AAFIMMGGQIAKAIYLVTQRT 62 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN- 121 L ++ + D +H+ SA V ++L+M+ + + I + N Sbjct: 63 FTL----SRDETYDFTHMF----QAWGSAIETVAGPVMLYMVIITAAGIYGNIALGGYNF 114 Query: 122 ---HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 P +++ G KR++ +N LV +K+ K+I+V + Y ML F Sbjct: 115 TWQGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVV-------MGMAYIAMLVFKD 167 Query: 179 ANPH-------SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 H L+HA + +M+ + + D+ + ++ ++KMSKQE+KD Sbjct: 168 EALHLDLELYPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKD 227 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G+P +KNR + + ++MM+ A +++TNPTHY++AL+Y Q APVL Sbjct: 228 ENKNAEGDPQVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVL 287 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + +A +RKIA H +PI P LAR+++ + S IP + AVAQ++ ++ Sbjct: 288 VAKGVDEMAMHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPTQLFMAVAQILAYVFQ 347 Query: 352 KK 353 K Sbjct: 348 LK 349 >gi|115350237|ref|YP_772076.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria AMMD] gi|115280225|gb|ABI85742.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria AMMD] Length = 399 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 179/357 (50%), Gaps = 29/357 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 ++TEA + ++ E A EG SRE + F+ + A +P G ++ Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A +E ++ ++ +L L+A +G +LI + Sbjct: 68 DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAAL---------LAPMALGGWLISQ 118 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLAMSLAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + S + A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G NL+A ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349 >gi|134294343|ref|YP_001118078.1| flagellar biosynthesis protein FlhB [Burkholderia vietnamiensis G4] gi|134137500|gb|ABO53243.1| flagellar biosynthetic protein FlhB [Burkholderia vietnamiensis G4] Length = 399 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 180/360 (50%), Gaps = 31/360 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIY---------- 56 ++TEA + ++ E A EG SRE + F+ +LA Y + S G + Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFA-LLAAGFYGTWLVSGPSGAHLQTMLRSAFT 66 Query: 57 ---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 + D H +L++A E ++ ++ +L L+A +G +LI Sbjct: 67 FDRATAFDTHRMLSAAGTASAEGLAAVLPILALTGLAAL---------LAPMALGGWLIS 117 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 + + F R+ G+ R++SI + S K ++VG I +++ + + Sbjct: 118 Q------KTFELKFDRLDPIAGLGRMFSIQGPIQLAMSVAKTMVVGGIGGVAIWRSKDEL 171 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L + + L A V + + L LD+ + Q+ KL+M+K+E+K E Sbjct: 172 LGLATQPLGAALADALHLVAVCCGTTVAGMLVLAGLDVPYQLWQYNKKLRMTKEEVKREH 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 +++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VA Sbjct: 232 RENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 292 KGVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|90579940|ref|ZP_01235748.1| flagellar biosynthesis protein [Vibrio angustum S14] gi|90438825|gb|EAS64008.1| flagellar biosynthesis protein [Vibrio angustum S14] Length = 376 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 194/358 (54%), Gaps = 12/358 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D + +TE + +++E A +G P SRE + + +++ + L++F G+ S Sbjct: 1 MSDSDGQE-RTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWF-GEGLSKALS 58 Query: 61 DLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + S T+ + D+ + V +L + + L + + LF+ IG+ + + + Sbjct: 59 HIMTAMFSLTRDDIFDLDRLFVIILDAIVYVLAPLFLVLIFLFVAAFIGAAGVGGVR-FS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDF 176 P +++ GIKR++ + + V +KS +K+ LVG+I + S E++F + + Sbjct: 118 TQAAMPKLSKMNPLSGIKRMFGMQSWVELIKSILKVGLVGSIACYLIFSSLEDFFQLSNE 177 Query: 177 I-SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + AN +HA + +++I + + +D+ + + +LKM+KQEIKDE K Sbjct: 178 VFPAN----YFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKD 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G P +K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG Sbjct: 234 SEGKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A K+R+IA +HNI I LAR+++ + IP + AVAQ++ ++ K Sbjct: 294 GDHLALKIREIANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351 >gi|330940692|gb|EGH43704.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. pisi str. 1704B] Length = 378 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGS-DIALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|262276382|ref|ZP_06054191.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] gi|262220190|gb|EEY71506.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] Length = 377 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/375 (29%), Positives = 186/375 (49%), Gaps = 46/375 (12%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE------------------ASLFSSILA 42 M+END +TE + ++ + A +G P SRE SL ++++A Sbjct: 1 MAENDG-QERTEDATPRRQQQAREKGQVPRSRELASVAVLVVGAVALMWFGESLGNALMA 59 Query: 43 CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 + L I+ VTS L ++ A I HI + +T + L L I GL+ Sbjct: 60 MMRKLFTLTREEIFDVTS-LGLIGYGA-------IFHIFWPITFILLM---LFIAGLIGA 108 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI- 161 G S+ + +P ++S +GIKR++ + V +KS +K+ LV + Sbjct: 109 SALGGVSF--------SWEAARPKLSKMSPLQGIKRMFGKQSWVELIKSILKVALVSGVA 160 Query: 162 ---ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 + SL + Y ++ N LYHA + +++I + + +D+ + Q Sbjct: 161 FYLMWASLNDFYQLSIETFPTN----LYHALDILLNFVLLICCSLLVVVAIDVPFQIWQH 216 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 +LKM+KQEIKDE K++ G P +K R + + R + +MM A ++ITNP HY++A Sbjct: 217 NEQLKMTKQEIKDEYKETEGKPEVKGRIRMLQREMAQRRMMAEVPSADVVITNPEHYSVA 276 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 LRY + APV+VAKG + +A K+R+IA EH+I I P LAR+++ + IP Sbjct: 277 LRYDSKMDKAPVVVAKGSDFLALKIREIAAEHDITIVPAPPLARAVYYSTELEQQIPDGL 336 Query: 339 YKAVAQLIYKIYHKK 353 + A+AQL+ ++ K Sbjct: 337 FTAIAQLLAYVFQLK 351 >gi|119503678|ref|ZP_01625761.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2080] gi|119460740|gb|EAW41832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2080] Length = 384 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +TE P++K+++ A +G SRE + +L C + L + +VT Sbjct: 1 MAEEQTGQERTEEPTAKRLQQAREKGQVARSRELNTLLMLLPCAVALWLTGEFAMDAVTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++ ++ S + L +S +++P L L + + + + +L Sbjct: 61 LFTGALTPPSE-AMKVTSEVAPFLGATLMSGLEMIVPFLALTVFVALLGPSVMGGLIFSL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G RI+S +L+ +KS +K LV + + L ++ IS Sbjct: 120 KSMSPGLDKIDPIKGFGRIFSRKSLLELVKSLLKFFLVSGVAVLVLLSFEREVMGLISLP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYG 238 + A + +L +I L + + V+ I + W KL+M+KQE+KDE+K++ G Sbjct: 180 VGEGIAQAGRMI--MLTLIFLSASLILVVAIDVPFQLWDHTRKLRMTKQEVKDEMKETDG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP +K + + R +M+ A ++ITNPTH+++AL+Y Q N AP ++AKG + Sbjct: 238 NPEMKGKIRQKQREIADRRMLADVPTADVVITNPTHFSVALKYDQEGNTAPRVLAKGADH 297 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A ++R IA H+I I+EEP LAR+LF IP + AVA+++ ++H Sbjct: 298 MAMQIRHIARAHDIVIYEEPPLARALFASTEAGDEIPGNLFLAVARVLAYVFH 350 >gi|238919250|ref|YP_002932765.1| flagellar biosynthetic protein FlhB, [Edwardsiella ictaluri 93-146] gi|238868819|gb|ACR68530.1| flagellar biosynthetic protein FlhB, putative [Edwardsiella ictaluri 93-146] Length = 388 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 109/350 (31%), Positives = 176/350 (50%), Gaps = 11/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ +IE A +G P SRE +SIL L G Y + L ++A Sbjct: 8 EKTEDPTPHRIEKAREKGQIPRSRE---LTSILMLAAGLAIMLLGGEY-LAHSLAEMIAQ 63 Query: 69 A---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 QR L + ++ L L A ++P L M+ G + ++ + + + +K Sbjct: 64 GLNFDQRLLSNDKQMLIQLGMLLQQAVAALMPVLFGLMLVGWCAPMLIGGFLFSPSSIKC 123 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ G KR++S L +K +K LVG + L + ML ++ + Sbjct: 124 DLNRLNPLSGFKRMFSSQVLAELLKGILKAALVGWVCGWFLLHYWSRMLRLVTEPTLDAM 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYGNPIIK 243 A V ++++L + + D+ Y W SKL+M+KQEIKDE K+ G+P +K Sbjct: 184 GDALHLVGMCGLLVVLGLLPMVGFDV--FYQVWSNLSKLRMTKQEIKDEFKEQEGDPHVK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +I+TNPTHYA+AL+Y + + AP ++AKG +A+++ Sbjct: 242 GRIRQQQRAAARRRMMSDVPGADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEVAQRI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K Sbjct: 302 KALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 351 >gi|197285519|ref|YP_002151391.1| flagellar biosynthesis protein FlhB [Proteus mirabilis HI4320] gi|227356013|ref|ZP_03840404.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] gi|194683006|emb|CAR43467.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|227163790|gb|EEI48698.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] Length = 382 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 180/358 (50%), Gaps = 17/358 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A +G S+E SS+L L + + G + +T Sbjct: 1 MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKE---LSSVLMILGGVSLLWMSGRF-ITR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPV 117 +L+ +L I + L+ + + V P L ++ IG + Sbjct: 56 ELYAMLTEGFTFNHHIIGNENLLIPRFASLMKQAVFALSPVFLGLVLVAIGGSAVLGGIN 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + +K K+ + G+KRI+S+N L K+ +K + VG T+ L N+ +L I Sbjct: 116 FSSKSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSLFVGLAATVFLWHNWNDILHLI 175 Query: 178 SANPHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + P S L +A + V I + + I + DI + KL+M++QEIKDE KQ Sbjct: 176 TLPPLSALANAMQLLIFAVYIAVFMLI-PMVAFDIIFQIRSHLKKLRMTRQEIKDEFKQQ 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND---APVLVA 293 G+P +K R + R +MM +A +I+TNPTHYA+AL+Y ND AP ++A Sbjct: 235 EGDPQLKARIRQQQHEMSRRRMMADVPKADVIVTNPTHYAVALQY----NDKMVAPKVLA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG IA K+++I EH IP+ E P LAR+L++ I AIP Y AVA+++ +Y Sbjct: 291 KGAGAIALKIKEIGAEHRIPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQ 348 >gi|253996636|ref|YP_003048700.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8] gi|253983315|gb|ACT48173.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8] Length = 387 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 108/356 (30%), Positives = 180/356 (50%), Gaps = 21/356 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S K++E A EG+ P SRE + + +LA + +L + L ++S Sbjct: 8 EKTEDASPKRLEQAREEGDVPRSRELATVTVLLAAGLAMLMMGG----QLADALKTSMSS 63 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + LL +S + L++ P L+ I S + V + + P Sbjct: 64 GLSFQRAYAYDPMLLLMKISDNIYNLLLAFSPLALILFFVAIASPALIGGWVFSEKALIP 123 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-------FTMLDFIS 178 F +++ G ++S N+L +KS K ILVG + + ++ + LD Sbjct: 124 KFGKLNPITGFSNMFSKNSLAELIKSIAKAILVGFVSYVVISHDMESILSLSLLPLDQSI 183 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 A + +L +F + VL++I +D+ + +Q+ KLKM+K+E+K E K+S G Sbjct: 184 AELNHLLLTSFLAIVSVLVLI-------AAIDVPFQLYQYADKLKMTKEEVKRESKESDG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP IK+R + R R +MM A ++ITNPTHYA+A++Y + APV+VAKG + Sbjct: 237 NPEIKSRIRQQQREMARRRMMAEIPNADVVITNPTHYAVAIKYKEGGMLAPVVVAKGADA 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 IA K+R+ A EH + I E P LAR+++ + IP Y AVA+++ ++ +I Sbjct: 297 IALKIREAAEEHKVLIVEAPKLARAIYTHTELTHEIPEALYTAVAEVLAYVFQMRI 352 >gi|27885003|gb|AAD56298.2| FlhB [Pseudomonas putida] Length = 380 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 186/357 (52%), Gaps = 12/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + L LL F ++ + Sbjct: 1 MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVVLTLGGAGALLTFGGHLAETLLT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLT--HLSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115 + + + +++ + FLL +++ A + V+ L + + G +G +L Sbjct: 61 LMRMNFSLTRDVIVDERAMGAFLLASGKMAIWAVQPVLGLLFVLALIGPVALGGFL---- 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + ++P F R+S GIKR++S+N++ +K+ K ++ + + L+ + +L Sbjct: 117 --FSGSLLQPKFSRMSPLSGIKRMFSLNSVTELLKAVAKFFVILVVALVVLSHDRQALLA 174 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + + HA V + + + + +D+ + Q KLKM+KQE++DE K Sbjct: 175 IANEPLEQAIIHAVQVVGWSALWMAAGLLLIAAVDVPFQLWQTQQKLKMTKQEVRDEYKD 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAK 294 S G P +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AK Sbjct: 235 SEGKPEVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAK 294 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G + IA K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ Sbjct: 295 GTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQ 351 >gi|330972452|gb|EGH72518.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 378 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGS-DIALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KS K +++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFVAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350 >gi|296330853|ref|ZP_06873328.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674371|ref|YP_003866043.1| flagellar export machinery protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151858|gb|EFG92732.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412615|gb|ADM37734.1| component of the flagellar export machinery [Bacillus subtilis subsp. spizizenii str. W23] Length = 360 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/350 (32%), Positives = 196/350 (56%), Gaps = 11/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSPGIYS-VTSDLHVLL 66 KTE + KK +D +G +++ A + +++ +I+L L P + + S L Sbjct: 13 EKTEKATPKKRKDTRKKGQ--VAKSADVNTAVSLLVIFLSLIAIGPFMRDRLLSFLETFY 70 Query: 67 ASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + KL + + H +F+ L + ++ P +L+ ++ G+ S +Q + + ++P Sbjct: 71 TESLTMKLSEANVHTLFI--SLLKDTAFVLAPIMLVALVAGVVSNYMQVGFLFSAEVIQP 128 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ +G KRIYS+ +V +KS +KI +VG L +Y +L P L Sbjct: 129 KLEKLDPIKGFKRIYSMRAIVELIKSILKITVVGFAAFAVLWLHYGEILRLPLLTPEEAL 188 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIK 243 +F + + + + A L + + + Y ++ Y K +KMSKQ+IKDE K+S G+PIIK Sbjct: 189 --SFVSKLTLWMGLSGAGALLLLAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIK 246 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+ Sbjct: 247 SKIKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKI 306 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 RKIA EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 307 RKIAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|172059259|ref|YP_001806911.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria MC40-6] gi|171991776|gb|ACB62695.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MC40-6] Length = 399 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 179/357 (50%), Gaps = 29/357 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 ++TEA + ++ E A EG SRE + F+ + A +P G ++ Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A +E ++ ++ +L L+ L +G +LI + Sbjct: 68 DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLA---------ALLAPMALGGWLISQ 118 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + S + A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPFGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G NL+A ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349 >gi|126665002|ref|ZP_01735985.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17] gi|126630372|gb|EBA00987.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17] Length = 377 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 186/356 (52%), Gaps = 11/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+++D+ KTE + +++E A +G S+E + + ++A LL F + + Sbjct: 1 MADDDSSQEKTEEATPRRLEKAKEDGETARSKELATTAVLMAGAGGLLIFGTHLGAALEA 60 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-GSYLIQRIP 116 + D L SA + D+ H+ L + +A+ + P L++ ++ I GS I + Sbjct: 61 IMRDAFTLERSA----IFDMRHMSVQLIASTKAAAWALSPILVMLLVAAIAGSIGIGGL- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + + P R++ +GI R++S +L+ K+ K+ LV TI + L +L Sbjct: 116 LFSGKSIAPKLNRMNPIKGIGRMFSARSLIELFKAIAKVGLVLTIAILILQVRTVDLLS- 174 Query: 177 ISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 ISA P + H +T+ ++ + V+D+ + + + KLKM+ QE+KDE K Sbjct: 175 ISAEPAVPAMEHVLWTLGWSFFLLSCATIIIAVIDVPFQIYDHHKKLKMTMQEVKDEHKD 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G P +K R + + R + +MM+ A ++ITNPTHYA+AL+Y AP++VAKG Sbjct: 235 SEGKPEVKGRIRQLQREMSQRRMMQDVPTADVVITNPTHYAVALKYDPNSMAAPMVVAKG 294 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+ +IA E+ + I P LAR+++ I IP Y A+AQ++ ++ Sbjct: 295 GDELAFKIMEIARENKVEILRTPPLARAVYHNSDIGQEIPDGLYMAIAQVLAYVFQ 350 >gi|237755398|ref|ZP_04584025.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium yellowstonense SS-5] gi|237692439|gb|EEP61420.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium yellowstonense SS-5] Length = 350 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 189/359 (52%), Gaps = 33/359 (9%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI--------YSVTSD 61 KTE + K+ + A EG S + S+ +S+ I L+F+ Y+ ++ Sbjct: 7 KTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLVGYFKYTFSNP 66 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L+++ + + I F L L++ L +P +L+ + GI S +IQ + L Sbjct: 67 LYLIPDNGSM-------FIWFTLKILAI----LTLPVILILFIVGIASNVIQFGFLFTLK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT----MLDFI 177 + P ++++ GIKRI+S+ L +K+ K+ T++L +YF + DF+ Sbjct: 116 PLTPKLDKLNVISGIKRIFSLTVLFELIKNLAKL-------TVALFLSYFLVKYLLNDFL 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFI---ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 SI + + ++I+++ F + + D + +++ LKM+K E+K+E K Sbjct: 169 VYMTGSINNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERK 228 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 GNP++K + R +M+ +A ++ITNP HYA+AL+Y + + AP ++AK Sbjct: 229 SYEGNPLVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVIAK 288 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 GQ+LIA+K++++A EH I I E+P LAR+L+ I IP Y+AVA+++ +IY K Sbjct: 289 GQDLIAQKIKEVAKEHGIKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKAK 347 >gi|221214213|ref|ZP_03587185.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1] gi|221165868|gb|EED98342.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1] Length = 399 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 100/359 (27%), Positives = 178/359 (49%), Gaps = 29/359 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58 ++TEA + ++ E A EG SRE + F+ + A P G ++ Sbjct: 8 DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQAMLRGAFAF 67 Query: 59 TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 D H +L++A +E ++ ++ +L +A +G +LI Sbjct: 68 DRATAFDTHRMLSAAGSASVEGLAALLPILALTGAAAL---------LAPMALGGWLI-- 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + F R++ G+ RI+SI + S K ++VG I +++ + +L Sbjct: 117 ----SPKTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + L A V + + + LD+ + Q+ KL+M+K+E+K E + Sbjct: 173 GLATQPLDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G+P +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAK Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G NL+A ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351 >gi|284007183|emb|CBA72471.1| flagellar biosynthesis protein FlhB [Arsenophonus nasoniae] Length = 383 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 113/352 (32%), Positives = 178/352 (50%), Gaps = 19/352 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+++K E A EG SRE S F ++A + F+ G +S LH L + Sbjct: 8 EKNEEPTARKKEKAKEEGQVVRSRELSSFFMLIAGVS---LFWICG-HSCYQKLHALFSQ 63 Query: 69 A------TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNL 120 + + ++VF + L+A +I GL+L + F S+ I +N Sbjct: 64 TFYFDKYILYNSQLLPNLVFESVKIGLNALLPIIAGLVL-IAFAAPSFFGGIH----INF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +K+++ G+KR++SIN L K+ +K++LV IT+ L N ++ Sbjct: 119 KSIKFDWKKLNPITGLKRLFSINALAELFKALLKVMLVSIGITLFLWVNLPHFFHLVTEP 178 Query: 181 PHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 H L A + I I + I L D+ + KL+M++QEIKDE KQ G+ Sbjct: 179 RHLALSQATQLMIFAAYIAIFMLI-PLVGFDLIYQLRSHLKKLRMTRQEIKDEFKQQEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK R + R R +MM +A +IITNPTHYA+AL+Y AP ++ KG LI Sbjct: 238 PHIKARIRQQQREISRRRMMADVPKADVIITNPTHYAVALQYDNQAMQAPKVLVKGAGLI 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A ++++ E+ IP+ E P LAR+L++ + IP Y AVA+++ +Y Sbjct: 298 ALNIKQLGEENRIPVLEAPPLARALYRHSKVGGHIPATLYAAVAEVLAWVYQ 349 >gi|290474957|ref|YP_003467841.1| putative part of export apparatus for flagellar proteins [Xenorhabdus bovienii SS-2004] gi|289174274|emb|CBJ81064.1| putative part of export apparatus for flagellar proteins [Xenorhabdus bovienii SS-2004] Length = 383 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 181/356 (50%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A +G S+E +SIL + + + G S+T Sbjct: 1 MAE-DSDLEKTEEPTPHKREKARKDGQIARSKE---LTSILMLVGGVSLLWMSG-NSITH 55 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 +L +++ + + ++ + L A ++P + ++ + + + + Sbjct: 56 ELSLMVFEGFNFDHNMVSNDKQMIQQVGRLLKQAVWALLPVFVGLVLVALSAPTLMGGLI 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + +K ++S G+K+I+S+N L K+ +K LVG + + N+ ML+ Sbjct: 116 FSSKSIKFDLAKLSPISGLKKIFSMNALAELFKAILKASLVGGGTALFIWLNWPAMLNLT 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + P L A + ++L + + D+ + KL+M++QEIKDE K+ Sbjct: 176 AQPPLMALSDAMMMLIFAGYIVLFMLIPMVAFDVLYQIRSHLKKLRMTRQEIKDEFKEQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG Sbjct: 236 GDPHVKARIRQQQRAAARKRMMSDVPKADVIVTNPTHYAVALQYDSKKMGAPKVLAKGAG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LIA ++++I E+ IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 296 LIALRIKEIGAENRIPLLEAPPLARALFRHAEVGGFIPATLYAAVAEVLAWVYQLK 351 >gi|89075526|ref|ZP_01161937.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] gi|89048798|gb|EAR54369.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] Length = 376 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 195/358 (54%), Gaps = 12/358 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D + +TE + +++E A +G P SRE + + +++ + L++F G+ S Sbjct: 1 MSDSDGQE-RTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWF-GEGLSKALS 58 Query: 61 DLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + + S T+ + D+ + V +L + + L + + LF+ IG+ + + + Sbjct: 59 HIMMAMFSLTRDDIFDLDRLFVIILDAIVYILAPLFLVLIFLFVAAFIGAAGVGGVR-FS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDF 176 P +++ GIKR++ + + V +KS +K+ LVG+I + S E++F + + Sbjct: 118 TQAAMPKLSKINPLSGIKRMFGLQSWVELIKSILKVGLVGSIACYLIFSNLEDFFQLSNE 177 Query: 177 I-SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + AN +HA + +++I + + +D+ + + +LKM+KQEIKDE K Sbjct: 178 VFPAN----YFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKD 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G P +K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG Sbjct: 234 SEGKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A K+R+IA +H+I I LAR+++ + IP + AVAQ++ ++ K Sbjct: 294 GDHLALKIREIANKHDIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351 >gi|299069778|emb|CBJ41057.1| flagellar export pore protein [Ralstonia solanacearum CMR15] Length = 387 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 108/365 (29%), Positives = 185/365 (50%), Gaps = 31/365 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE S++++E A EG+ P SRE F LL + G++ + Sbjct: 1 MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSF--------VLLATGAGGLWVMGE 51 Query: 61 DLHVLLASATQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQR 114 + AS R LE D + ++ L V+ GL+L ++ S L Sbjct: 52 SIVRTAASFLARCLEFHRYDYTRAQEQWHYVGAQFGPLATVLAGLVLMLVLAALSPLALT 111 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 ++ V P R+ G+KR++S+ L+ + K++L+G + ++ +L Sbjct: 112 RGAISFKPVTPDITRLLGMHGLKRMFSVQGLLELPRLLAKLVLLGGV-------GWWLIL 164 Query: 175 ----DFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSK 226 DF+ P L V + L +A + +L D+ + Q+ K +M+K Sbjct: 165 HYRDDFVEL-PRQDLIAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTK 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 +E++ E ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E Sbjct: 224 EEVRKEHRESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEG 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP ++AKG +++A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ Sbjct: 284 GAPRVLAKGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVL 343 Query: 347 YKIYH 351 +Y Sbjct: 344 AYVYQ 348 >gi|16799762|ref|NP_470030.1| flagellar biosynthesis protein FlhB [Listeria innocua Clip11262] gi|16413139|emb|CAC95919.1| lin0687 [Listeria innocua Clip11262] Length = 348 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIKAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F L ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLASMESYSLFYLMEFG----KVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|85711029|ref|ZP_01042089.1| flagellar biosynthesis protein [Idiomarina baltica OS145] gi|85694942|gb|EAQ32880.1| flagellar biosynthesis protein [Idiomarina baltica OS145] Length = 375 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 185/357 (51%), Gaps = 9/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +TE P+ K+ +A +G S+E + +L F+F +Y+ Sbjct: 1 MAETD--QERTEEPTEKRKREAREKGQIARSKEMGT-AFVLVSAAVAFFWFGESLYAGVR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLN 119 L L + +R+ D S I L++ ++ P +++F + ++L + +N Sbjct: 58 GLFRDLFTLERRQAFDTSQI---YKALAVGFEHIIWPVIIIFAFITLFTFLGNSWLGGIN 114 Query: 120 LNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P F R++ G KR++ LV +K K +V + L+ + +L Sbjct: 115 FSWKAMAPKFSRMNPMNGFKRMFGTQALVELVKGIAKFGVVAISAFLLLSWQFDNILQIS 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S++ +A + + ++I + + V+D + + L+M+KQEIKDE K S Sbjct: 175 MGQMPSMIENALDILMWMFLLICCSMFLIVVIDAPFQLWKHNKDLRMTKQEIKDEHKDSE 234 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + +MM+ +A +++TNPTH+A+A++Y ++ N AP+L+AKG + Sbjct: 235 GSPEVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHFAVAIKYEESGNQAPILLAKGTD 294 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A K+R+IA E+++P+ P+LARS++ + + IP + AVAQ++ +Y K+ Sbjct: 295 ETAAKIREIALEYDVPLVASPALARSIYHTTELETEIPRGLFVAVAQVLAYVYQLKM 351 >gi|302392376|ref|YP_003828196.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM 5501] gi|302204453|gb|ADL13131.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM 5501] Length = 353 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 182/346 (52%), Gaps = 5/346 (1%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ K+ ++A EG S+E S+ ++L I L F +Y ++ Sbjct: 4 EEKTEDPTPKRRQEAREEGQVAQSQELSMAFTLLFSFIMLFFLMDNILYESMEFMNKYFT 63 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L ++ LL L RLV P + + + G+ L+Q + ++P Sbjct: 64 DYMTMTL-NLQTFYTLLLELMQFIFRLVAPLMFVVALVGVVVGLLQTGFLFTPTSLQPDP 122 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ G K+I+S + F KS +KI +VG I +++ +N ++ F + ++ Sbjct: 123 SKLDPVSGFKQIFSKQTVAEFFKSILKISIVGGIAYLTIKDNLPQLIMFSKMGLNQVVSL 182 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + I + L + L +LD + Y +W +LKM+KQE+K+E KQ+ GNP IK R Sbjct: 183 IGSIIYSLAIKVSLILILLGILD--FIYQKWEHEQQLKMTKQEVKEEKKQTEGNPEIKKR 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 QK + ++MME+ A ++ITNPTH A+A+++ DAP++VAKG+ IA K++K Sbjct: 241 QKEKQQEMAMNRMMESVPEADVVITNPTHIAVAIKFDIDNMDAPIVVAKGKGEIAHKIKK 300 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A E I I EE LAR+L+ QV I IP Y+AVA+++ +Y Sbjct: 301 KAEECGIEIVEEKPLARALYGQVEIEEEIPMELYQAVAEILAYVYQ 346 >gi|254522000|ref|ZP_05134055.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14] gi|219719591|gb|EED38116.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14] Length = 377 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 176/356 (49%), Gaps = 11/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57 MSEN++ KTE P+ K++ DA +GN P SRE A++F + L + S G + Sbjct: 2 MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGA--GVLAVMAMSGSIGRGA 59 Query: 58 VTSDLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 H L + R+ E H LL L ++ P +L+ ++ + L+ Sbjct: 60 TAWMKHALSPEQSLRQNPKELFGHFGDLLLQFLL----VIAPLVLVCLLASFVAPLVMGG 115 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + P R++ G+KR+Y + F KS +++ VG + + + T+ Sbjct: 116 LRWSQKALLPDINRLNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRG 175 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 I + + ++L+ + L +D + W KLKM+++E++ E+K+ Sbjct: 176 LIHHPLETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKE 235 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P +K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G Sbjct: 236 SEGSPEVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPTVVALG 295 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + A ++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y Sbjct: 296 VDETALRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQ 351 >gi|307824492|ref|ZP_07654717.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum SV96] gi|307734476|gb|EFO05328.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum SV96] Length = 374 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 184/357 (51%), Gaps = 12/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL---FFFSPGIYS 57 MS+ND +KTE P+ K++ DA +G P SRE + F ++A LL G+ Sbjct: 1 MSDND---DKTEDPTGKRLADARKKGQIPRSRELNTFVILMASATMLLTQGGTIGNGLLK 57 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + L +A + D I L + L+ P + + ++ I + + V Sbjct: 58 IMRTTFRLSRAA----IFDPDSITLYLKQAMIDTVMLLAPFMAVMVVVAIVTPISMGGWV 113 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDF 176 + + + +++ GI RI++I LV K+ +KI+LV + ++L ++ +L Sbjct: 114 FSWEAIAFNPSKMNPIAGIARIFAIRGLVELFKALLKILLV-FAVAVALYRSFIGELLSL 172 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 +P + HA + ++++ + + ++D+ + +KMSKQEIKDE K + Sbjct: 173 GGESPIHSIGHALDIIGTCILLLSSSLILVVMIDVPYQLWDHSKNMKMSKQEIKDENKDA 232 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K RQ+ + + +MME +A +I+TNP+HYA+AL+Y Q N AP LVAKG Sbjct: 233 EGSPEVKGRQRRMQMETAQRRMMEEVPKADVIVTNPSHYAVALKYDQNSNSAPKLVAKGV 292 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +LIA ++R A +P+ P LAR+L+ ++ IP Y AVAQ++ +Y K Sbjct: 293 DLIAAQIRNAAIGSGVPLVASPPLARALYYSTELDREIPQGLYLAVAQILAYVYQLK 349 >gi|238924151|ref|YP_002937667.1| flagellar biosynthesis/type III secretory pathway protein [Eubacterium rectale ATCC 33656] gi|238875826|gb|ACR75533.1| flagellar biosynthesis/type III secretory pathway protein [Eubacterium rectale ATCC 33656] gi|291524884|emb|CBK90471.1| flagellar biosynthetic protein FlhB [Eubacterium rectale DSM 17629] Length = 382 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 194/378 (51%), Gaps = 49/378 (12%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLF--FFSPGIYSV 58 +++ KTE + KK++DA EG S+E + F I+ L+ +F F + + Sbjct: 25 AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84 Query: 59 TSDLHVLLASATQRKLEDISHIV-----------FLLTHLSLSASRLVIPGLLLFMMFGI 107 S ++ + + E IS + FLLT L A +VI L+ + G Sbjct: 85 FSTVYKKMPDFLKESQEQISSVSVTHYLNNVILQFLLTVLPFFAFGVVITILVSIIQVG- 143 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 + I P+ P + + G KRI S +++ +KS +K VG I+ ++ + Sbjct: 144 --FKISTKPM------APKLSKFNPINGFKRILSKDSIFELLKSVLK---VGIIMYVAYS 192 Query: 168 ENYFTMLDFISANPHS----ILY-----HAFFTVRKVLIMILLFIATL----TVLDIGWS 214 S H ILY A + ++I L I+ + + D ++ Sbjct: 193 ----------SVKSHQNDIFILYELPLKQAIVLIGDIIINTGLKISIVYMIVGIADFAYN 242 Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274 H++ + +KM+KQE+KDE K + G+P IK +Q+ + + +MM+ +A ++ITNPTH Sbjct: 243 KHKFNNDMKMTKQEVKDEFKNTEGDPAIKGQQRKRMQEASQRRMMQDVPKADVVITNPTH 302 Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 +A+A++Y +NDAPV+VAKGQ+ +A+K+++IA ++NI I E LAR LF V + + I Sbjct: 303 FAVAVKYDAQKNDAPVVVAKGQDYVAQKIKEIARDNNIHIVENKPLARMLFHNVDLGAEI 362 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y++VA+++ IY + Sbjct: 363 PPELYRSVAEILAMIYKE 380 >gi|313624921|gb|EFR94829.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL J1-023] Length = 348 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F L ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLASMESYSLFYLMEFG----KVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 SQIFALFKNEFLALFLVIAIIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|119476304|ref|ZP_01616655.1| Flagellar biosynthesis pathway, component FlhB [marine gamma proteobacterium HTCC2143] gi|119450168|gb|EAW31403.1| Flagellar biosynthesis pathway, component FlhB [marine gamma proteobacterium HTCC2143] Length = 386 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 103/365 (28%), Positives = 177/365 (48%), Gaps = 29/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END KTE + K++E + EG S+E +LA + L+ + Sbjct: 1 MAENDNGQEKTEEATPKRLEKSREEGQVARSKELGTALILLAGVGGLIVY--------GG 52 Query: 61 DLHVLLASATQRKLEDISHIVF----LLTHLSLSASRLVIPGLLLFMMF----------G 106 D L + + F +L HL + S +I +L F Sbjct: 53 DFGQALMGVMRFNFSMPRDVAFDESLMLRHLG-NTSIFIIETMLPFFALIAVAAVVGPVA 111 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 +G + +L+ + P R+ +GIKRI+S+ +LV +KS K+++VG++ +L Sbjct: 112 LGGF------ILSGKALVPKLTRLDPIKGIKRIFSLTSLVELLKSICKVLVVGSMAYFTL 165 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 +LD A + V ++ + + + ++D+ + KLKM+ Sbjct: 166 RNAEMDLLDLAHAELQPAIVQMLTIVAWSVLAVSASMILIVLIDVPFQIFDHSKKLKMTL 225 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE+K S G P +K R + + R + +MMEA A ++ITNP H+++AL+Y Sbjct: 226 QEVKDEMKDSEGKPEVKGRIRQLQREMAQRRMMEAVPEADVVITNPEHFSIALKYDVEGG 285 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP+LVAKG + +A K+R+IA +++ I P LAR+++ I+ IP Y AVAQ++ Sbjct: 286 GAPILVAKGVDFLAIKIREIANANDVMILAAPPLARAIYFTTEIDDEIPNTLYLAVAQVL 345 Query: 347 YKIYH 351 ++ Sbjct: 346 AYVFQ 350 >gi|319649548|ref|ZP_08003704.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2] gi|317398710|gb|EFV79392.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2] Length = 361 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 154/261 (59%), Gaps = 8/261 (3%) Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 P +L+ M+ GI + +Q + + ++P +++ +G KRI+S+ +V +KS +KI Sbjct: 102 PIMLVAMLAGITANFMQVGTLFSTEAIQPKLEKMDPIKGFKRIFSMRAIVELLKSMLKIA 161 Query: 157 LVG--TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM--ILLFIATLTVLDIG 212 VG + L + +L S ++ A TV+ LI LLF L+VLD Sbjct: 162 FVGVAAFAVLWLRIDEILILSQKSVGT-AMATLASLTVQMGLIASAALLF---LSVLDYL 217 Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 + + + ++MSKQ+IKDE K G+P+IK++ K R +MM+ +A ++ITNP Sbjct: 218 YQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKIKQRQREMAMRRMMQEVPKADVVITNP 277 Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH+A+AL Y +T++DAP++VAKG + +A+K++ IA EH++ E LAR+L+ Q I Sbjct: 278 THFAIALSYDETKSDAPIVVAKGVDFVAQKIKLIAKEHDVIAVENRPLARALYSQAEIGQ 337 Query: 333 AIPPVFYKAVAQLIYKIYHKK 353 AIP F+KAVA+++ +Y K Sbjct: 338 AIPEEFFKAVAEILAYVYRTK 358 >gi|309778952|ref|ZP_07673722.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA] gi|308922299|gb|EFP67926.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA] Length = 387 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 180/367 (49%), Gaps = 50/367 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S +++E A EG+ P SRE + F+ L S G V D V AS Sbjct: 8 EKTEPASPRRLEQAREEGDVPRSRELASFA---------LTAVSAGGLWVMGDSIVRAAS 58 Query: 69 A-TQRKLE-----------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 A R LE +++ L+++ + GL+L ++ S L Sbjct: 59 AFLARCLEFHRYNYTSGQDQWNYVTGQFMPLAMA-----LGGLMLMLVIAALSPLALTRG 113 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV------------GTIITI 164 ++ + P R+ +G+ R++S+ L+ + +K+ L+ G +I + Sbjct: 114 AISFKPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIEL 173 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 + M D + + AF + V++++ +D+ S Q+ K +M Sbjct: 174 PQQDLGVAMRDTLH-----VAGVAFLCMAAVMMLV-------AAVDVPLSLWQYARKHRM 221 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +K+E++ E ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + Sbjct: 222 TKEEVRKEHRESEGDPHVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEK 281 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E AP ++AKG +++A K+R++ EH IPI E P LAR+L++ I IP Y AVA+ Sbjct: 282 EGGAPRVLAKGADMVAAKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAE 341 Query: 345 LIYKIYH 351 ++ +Y Sbjct: 342 VLAYVYQ 348 >gi|304312007|ref|YP_003811605.1| Translocation protein in type III secretion [gamma proteobacterium HdN1] gi|301797740|emb|CBL45962.1| Translocation protein in type III secretion [gamma proteobacterium HdN1] Length = 358 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 186/342 (54%), Gaps = 9/342 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLA 67 ++TE P+ K+IEDA +GN +SR L ++L I LL P ++ +H + Sbjct: 7 DQTELPTPKRIEDARRDGN--VSRSQDLGKTLLIPVWIGLLGGLLPVLFQRW--IHYVRT 62 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKP 125 + ++++ + L +S + L I L+F IG ++ +Q VL L VKP Sbjct: 63 TWQNLPPDNLNGL--LDAMMSGAGVFLAILLPLIFFAAAIGVFIEFVQVGKVLALKPVKP 120 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ G+KR++S N V KS K L+ + I L + L + ++ Sbjct: 121 DLNRLNPAAGLKRMFSQRNFVELAKSVGKSSLIILLSMIVLRDQLGDTLKLPYGSHETLF 180 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + T+R +LI + + + +D+ + + W L MS+++I+ E K S G+P++K + Sbjct: 181 AVLWLTLRAMLISVTIAFLLIAAMDVAYQKYAWTKDLMMSRRDIQQEHKNSEGDPMLKGQ 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++++ + + M + A++++TNPTHYA+A+ Y + + D P++VAKG++ A+ +R+ Sbjct: 241 RRALHQEWSQENAMGSVRGASVVVTNPTHYAVAIHYEKGKTDLPLVVAKGEDYFARMIRE 300 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 A E +PI E LAR+L++ + +++ I F++AVAQL++ Sbjct: 301 AAQEAGVPIMENVDLARALYRDIDVHNPITSEFFEAVAQLLH 342 >gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] Length = 610 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 10/354 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G P S+E + +L I LL S D+ Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVPKSKEVNSAIILLTSTIILLTLGEYVANSFKKDIIEF 320 Query: 66 LASATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 + +L IS IV +L + +V+P M+ GIG+ L+Q + + Sbjct: 321 FTNYLNIELNSSSLISIIVTVLWRFMIVFLPVVVP----LMIMGIGANLLQTGYINSKEP 376 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP +++ G K+++S+ ++ +K I ++G L N+ +L + Sbjct: 377 LKPQLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFAGYGFLKSNFKKVLSMTNLRFP 436 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I+ + + L + + + D + Q+ ++MSKQE+K+E KQ G+P I Sbjct: 437 VIITSFLKLTTNIFFRVSLIMFAIALTDFIYQKFQFKKDMRMSKQEVKEEFKQMEGDPQI 496 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + K R +MM+ A+++ITNPTH A+AL+Y +++AP+LVAKG + IA K Sbjct: 497 KGKIKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGQDNAPMLVAKGSDYIAIK 556 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353 +++IA E+++PI E LAR +FK+V I + IP Y+AVA+ L+YK+ +K Sbjct: 557 IKQIAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLKRRK 610 >gi|297569688|ref|YP_003691032.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus AHT2] gi|296925603|gb|ADH86413.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus AHT2] Length = 353 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 181/351 (51%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ +++ +A +G+ S E + +LA +I L F VT Sbjct: 1 MAEEQSGQEKTEKPTERRLLEARKKGDVAKSMEVPSAAVLLAGVIVLYFTGERMFNQVTG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + L ++ + +S ++ P +L + + + +Q + Sbjct: 61 MMQFYLGNLDTLNLSP-GNMPAISRQALISIFDVLWPLMLTVFIVALLANYMQIGVLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +++ +G R++S L NF KS K+ +VG + + +L + Sbjct: 120 EKMKPKLEKIDPLKGFGRLFSKQALANFFKSMAKMGVVGYVAYSEVKRALNEILPLMDKA 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P+ I+ T + + L IA + +D + Q+ K+KM+KQ++KDE KQ+ G+P Sbjct: 180 PYPIVMFMTETAFWIFLKCALAIAIIAAIDYAFQRWQFMEKMKMTKQDMKDEGKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R ++I R +MM +A +++TNPT A+A++Y AP ++AKG ++A Sbjct: 240 HVKGRIRAIQTEMARKRMMAEVPKADVVVTNPTRLAIAIKYDALTMPAPKVLAKGAGVVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+IA EH +PI E+ LA++L++ V I+ IP ++AVA+++ +Y+ Sbjct: 300 GKIREIAQEHEVPIVEDKPLAQALYQTVEIDQTIPENLFQAVAEVLAYVYN 350 >gi|89895721|ref|YP_519208.1| hypothetical protein DSY2975 [Desulfitobacterium hafniense Y51] gi|89335169|dbj|BAE84764.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 354 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 181/356 (50%), Gaps = 22/356 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDL----H 63 KT + ++ ++A +G + + + S++ L I LL F+ P + S + + Sbjct: 7 EKTFQATPRRRQEARKKGQ--VFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQIFPYVY 64 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L A T R + L+ L ++V P ++ + G+ +Q + L + Sbjct: 65 GLSAEWTAR------SVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTLEPL 118 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANP 181 KP R+S+ G KR++ + V +KS +K+ +G + ++ +N+ F ++ ++ Sbjct: 119 KPQLSRISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLTVGQ 178 Query: 182 HSILYHAFFTVRKVLIMILLF-IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ I + F IA + L W Y + LKMS +E+K E KQ+ GNP Sbjct: 179 GAMFIGGLIVELGWKIALSFFVIAAIDFLYQWWDYEK---NLKMSHEELKQEYKQTEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K K R+ +MM+ A +++TNPTHYA+ALRY EN APV+VAKG + IA Sbjct: 236 QLKGEIKRKQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKK 353 ++++++A ++ I E LAR+LF Q I A+P YKAVA++ +Y++ KK Sbjct: 296 QRIKQLAKDYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLKRKK 351 >gi|148266206|ref|YP_001232912.1| flagellar biosynthesis protein FlhB [Geobacter uraniireducens Rf4] gi|146399706|gb|ABQ28339.1| flagellar biosynthetic protein FlhB [Geobacter uraniireducens Rf4] Length = 354 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 114/363 (31%), Positives = 201/363 (55%), Gaps = 22/363 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIY 56 MSE D +KTE P+ K+I DA +GN P SR+ +L + I+A + F FS Sbjct: 1 MSEQD-KHSKTEQPTGKRISDAKEKGNIPRSRDLTSTVTLMAGIIALYVTGGFMFS---- 55 Query: 57 SVTSDLHVLLAS-ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 ++ LLA ATQ + + + L+ L + + ++ P LL+ ++ G+ + + Q Sbjct: 56 TLKGSAKELLAGIATQDMTQ--AGVYTLMLKLLFTTTLVLAPFLLVVVVAGLVAEISQGG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172 + + F++++ +G+KR+++ + V +KSF+KI++VG + + N Sbjct: 114 ISTSFEKIGFDFEKLNPVQGVKRLFNKDAAVQVLKSFLKIVIVGYMAYRVMRDEVNNLIY 173 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 ++D + H F K+++ + L+VLD+ + ++ LKM+KQE+KDE Sbjct: 174 LVDMDIGGITEFIGHISF---KIVLHTCGALFILSVLDLIFVKWRFIENLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNR--QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 K S G+P IK + QK ++R R +++ T A +++TNPTH+A+AL+Y + + APV Sbjct: 231 NKDSEGDPHIKGKIKQKQFEQARRRMRLIIPT--ADVVVTNPTHFAVALKYDRQKMAAPV 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++AKG + +A+++++IA E NI + E LAR L+ QV IP Y AVA+++ +Y Sbjct: 289 VLAKGADFLAQRIKEIARESNITLVENRFLARELYAQVKEGEEIPEALYAAVAEILAYVY 348 Query: 351 HKK 353 K Sbjct: 349 SLK 351 >gi|289208350|ref|YP_003460416.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix] gi|288943981|gb|ADC71680.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix] Length = 383 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 185/368 (50%), Gaps = 31/368 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN++ KTE P+ K++ +A +G P SRE S F ++A ++ FF Sbjct: 1 MAENESGQEKTEQPTPKRLREAKEKGQVPRSRELSTFLVLMAAGGFMTFF--------GP 52 Query: 61 DLHVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L LA T + + D S ++ L+ R ++P + M+ + + ++ Sbjct: 53 TLGGQLAEQTAGRFDIERDLAYDSSLLLPYLSEQIFMTLRTLLPLFGVLMVAAVLAPILI 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 + KP +++ +G+KRI+S L+ F K+F K +LV + +S+ + Sbjct: 113 GGANFSWQAAKPKASKLNPLKGLKRIFSWQGLMEFGKTFAKFVLVAGV-AMSVLWTFSDR 171 Query: 174 LDFISANP-HSILYHA-------FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 L + P + HA F V LI++ A + W++ + +L+M+ Sbjct: 172 LLMLGYEPLEQAITHAAQLALGTFVAVSAALILVAAIDAPFQM----WNHQK---QLRMT 224 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 +QE+KDE K++ G P +K + + + + + +MME +A ++ITNPTHYA+A+ Y + Sbjct: 225 RQELKDEYKETDGKPEVKQKIRQLQQEMAQRRMMEEVPKADVVITNPTHYAVAITYEASR 284 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP LVAKG + +A +R +A EH I E P +AR+++ +N IP + AVA++ Sbjct: 285 MAAPKLVAKGVDEVAASIRAVADEHKIIRVEAPRVARAIYFTTDLNQEIPNGLFVAVARI 344 Query: 346 IYKIYHKK 353 + +Y K Sbjct: 345 LAYVYQLK 352 >gi|325920558|ref|ZP_08182480.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC 19865] gi|325548951|gb|EGD19883.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC 19865] Length = 376 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 180/351 (51%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI S Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFGLMALARGIGDGAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++ Sbjct: 120 KAIMPDLNKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASLCISKGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 300 FRIREVCEQHRVSIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|30250406|ref|NP_842476.1| flagellar biosynthesis protein FlhB [Nitrosomonas europaea ATCC 19718] gi|30181201|emb|CAD86399.1| FlhB HrpN YscU SpaS Family [Nitrosomonas europaea ATCC 19718] Length = 376 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 105/365 (28%), Positives = 184/365 (50%), Gaps = 32/365 (8%) Query: 6 APDN---KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62 A DN +TE S +++E A EG S+E + F+ ++A L S I +++ L Sbjct: 2 ADDNDLERTEPASPRRLEKAREEGQVARSQELTTFTLLIAASSSLWVIGSIIIQKLSAVL 61 Query: 63 H--------------VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108 +LL Q L+ + I LL L + A LV P LL +F Sbjct: 62 ESGLRMEQEVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIIA--LVAPMLLSGWLFSSK 119 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 + P KR++ G+KRI+S L+ +K+ K++++G + + Sbjct: 120 ALF-------------PDLKRLNPVNGLKRIFSSRGLIELVKAIAKVMVIGGVAAGIIWS 166 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + +LD + + L + ++I+ + + V+D+ + +L+MS+++ Sbjct: 167 HKQDVLDLVGMPLDTSLISMSRLIGLTFMLIVGAMLLIVVIDVPFQIWNHARQLRMSRED 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 ++ E K+ G+P +K R +++ R R +MM +A +++TNPTHYA+AL+Y A Sbjct: 227 LRKEAKEDEGDPQVKGRIRNMQRQIARRRMMAEVPKADVVVTNPTHYAVALKYQDRSMRA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P +VAKG LIA ++R++A EH+IP+ E P LAR+L+ V +++ IP Y AVA ++ Sbjct: 287 PKVVAKGTQLIAARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAY 346 Query: 349 IYHKK 353 I+ K Sbjct: 347 IFQLK 351 >gi|219670145|ref|YP_002460580.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense DCB-2] gi|219540405|gb|ACL22144.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense DCB-2] Length = 350 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 179/353 (50%), Gaps = 19/353 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDL----H 63 KT + ++ ++A +G + + + S++ L I LL F+ P + S + + Sbjct: 3 EKTFQATPRRRQEARKKGQ--VFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQIFPYVY 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L A T R + L+ L ++V P ++ + G+ +Q + L + Sbjct: 61 GLSAEWTAR------SVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTLEPL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANP 181 KP R+S+ G KR++ + V +KS +K+ +G + ++ +N+ F ++ ++ Sbjct: 115 KPQLSRISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLTVGQ 174 Query: 182 HSILYHAFFTVRKVLIMILLF-IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ I + F IA + L W Y + LKMS +E+K E KQ+ GNP Sbjct: 175 GAMFIGGLIVELGWKIALSFFVIAAIDFLYQWWDYEK---NLKMSHEELKQEYKQTEGNP 231 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K K R+ +MM+ A +++TNPTHYA+ALRY EN APV+VAKG + IA Sbjct: 232 QLKGEIKRKQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIA 291 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++++A ++ I E LAR+LF Q I A+P YKAVA+++ +Y K Sbjct: 292 QRIKQLAKDYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 344 >gi|298528402|ref|ZP_07015806.1| type III secretion exporter [Desulfonatronospira thiodismutans ASO3-1] gi|298512054|gb|EFI35956.1| type III secretion exporter [Desulfonatronospira thiodismutans ASO3-1] Length = 359 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 190/355 (53%), Gaps = 12/355 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI---YS 57 M + D +KTE + K+ + A +GN P S+E S++A ++ L FF P I Y Sbjct: 1 MPQKDP--SKTEDATPKRRKKAREQGNVPKSQEMPKIISLIAGILALRLFF-PHIRDTYM 57 Query: 58 VTSDLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 ++ + A Q E + H+ VF + +++ +++P +L+ I + +Q Sbjct: 58 EMTEWFMDQAFHYQLNPESLYHLAVFSIQNIA----SMLLPFMLIVFFVTIVAIYLQVGF 113 Query: 117 VLNLNHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + +KP K ++ EG+K+ + +N LV +K+ V T I +T + L Sbjct: 114 LWTFKPLKPKMKIFNVVEGLKKKFLDLNTLVRLVKNVGIASAVATAPYIIITSEFENFLP 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +P I+ + T K+ ++ ++ + + + D+ ++ + LKM+K E+KDE KQ Sbjct: 174 LFYEDPPFIVAYILNTAFKMAMLAMIPLLIIAIADVAYTRWDYEQNLKMTKDEVKDERKQ 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + GNP +K Q+ +S + +M + +A ++ITNPTH A+A++Y AP+++AKG Sbjct: 234 AEGNPEVKKEQRKKMQSTTQQRMRQEVPKADVVITNPTHLAVAIKYDPVLAPAPMVLAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 N A+K+++IA E+NIPI E LA++L+K V IP YKAVA ++ ++Y Sbjct: 294 ANFRAEKIKEIARENNIPIRENKPLAQALYKNVQEGETIPEDMYKAVASILAQLY 348 >gi|114566403|ref|YP_753557.1| flagellar biosynthesis/type III secretory pathway protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337338|gb|ABI68186.1| flagellar biosynthesis/type III secretory pathway protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 369 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 184/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D KTE + ++ E+A +G S + + ++A + F + ++ S Sbjct: 17 DDGMGEKTEKATPRRREEARKKGQVFKSTDLNSAIILIAGSVASFMAFPYMVNNLKSFTT 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L TQ+ + +I F+L + + +++ P L + + +Q V + + Sbjct: 77 LYLLQRTQQDFSN-DYIYFMLLEVLIIMGKMIFPIFLTTFIVALLITYLQVGFVFSGESL 135 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P +R++ EG KRI+S LV KS +K+I+ G I+ + ++Y FI + Sbjct: 136 TPKLERLNPVEGFKRIFSKRALVELGKSLLKVIVTGYIVYSVMRKHYILFPRFIDMELIA 195 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L V ++ + + L + + D + +++ LKMSK EIK E KQ+ G+P +K Sbjct: 196 GLQVLSSIVFEMAMKVGLVFIIIGIADYIFQWYEHEKSLKMSKYEIKQEYKQTEGDPQLK 255 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+ I R +MM +A ++ITNPTH+A+ L+Y ++ +APV+VA+G++ +A K+ Sbjct: 256 SRQRRIQRDIAMQRMMAEVPKADVVITNPTHFAVVLKYEASKMEAPVVVARGKDFMALKI 315 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IA H + I E P LAR+L+ I +P Y+AVA+++ +Y +K Sbjct: 316 KEIARMHGVVIVENPVLARTLYYNTEIGDLVPEELYQAVAEVLAFVYKQK 365 >gi|322382375|ref|ZP_08056282.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp. larvae B-3650] gi|321153728|gb|EFX46103.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp. larvae B-3650] Length = 378 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 142/232 (61%), Gaps = 2/232 (0%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K F +++ EG KRI+S+ +++F+KS +K+I++ I+ +++ ++ Sbjct: 144 LKMKFNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQ 203 Query: 183 SIL-YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +L Y TV+ L + + IA + LD + ++ L+MSKQEIKDE K+S G+P+ Sbjct: 204 DMLPYIGSLTVQLGLKIGGVLIA-IAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPL 262 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK + + R +MM+ +A +IITNPTH+A+ALRY E +AP ++AKG +LIA Sbjct: 263 IKGKIRERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIAL 322 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++++A E+ + I E LAR+L+ QV I AIP ++AVA+++ +Y K Sbjct: 323 KIKEVAKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 374 >gi|206603139|gb|EDZ39619.1| flagellar biosynthesis protein, FlhB [Leptospirillum sp. Group II '5-way CG'] Length = 362 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 1/348 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D + K E P+++K+E A EG SRE +LA L+ + + + + Sbjct: 3 DEFEQKQEEPTARKLEKAREEGQVARSREVGSLFFLLAALLLFGSVGHTVVVGLENQMEQ 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A +L S I L + + + P F+ I ++L Q PV ++ + Sbjct: 63 GFVEAPSIRLTPDS-IGPYLGKILWNTLKTGFPLWGGFLAASILAFLFQGPPVWSVKALV 121 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P ++RVS +G+ R++S +L+ K VK++LV ++ SL ++ + +A H Sbjct: 122 PKWERVSPVKGMGRLFSGRSLIELAKYLVKVLLVMFVVLWSLRGDWERLPALQAAGVHRF 181 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 +R L ++ + +LD Q L+M++ EI++E K++ G+P +++ Sbjct: 182 FGALTGFLRDALYRLIPLFVVIAILDFLLQRIQLNRSLRMTRSEIREEFKETEGDPHVRS 241 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R +SI R+ R +MM AT+++TNPTH+A+A+RY APV+VAKGQ+ +A +R Sbjct: 242 RIRSIQRAMARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVALNIR 301 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 KIA E +P+ E P LAR+L+ P++ IP FY+AVA+++ +Y + Sbjct: 302 KIAREARVPVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 349 >gi|190574224|ref|YP_001972069.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia K279a] gi|190012146|emb|CAQ45769.1| putative flagellar biosynthetic protein FlhB [Stenotrophomonas maltophilia K279a] Length = 376 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 173/354 (48%), Gaps = 7/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57 MSEN++ KTE P+ K++ DA +GN P SRE A++F + + ++ + G + Sbjct: 1 MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 Q E H LL L ++ P +L+ ++ + L+ Sbjct: 61 WMKHALSPEQGLRQNPKELFGHFGDLLLQFML----VIAPLVLVCLLASFVAPLVMGGLR 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P R++ G+KR+Y + F KS +++ VG + + + T+ I Sbjct: 117 WSQKALLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLI 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + ++L+ + L +D + W KLKM+++E++ E+K+S Sbjct: 177 HHPLETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G + Sbjct: 237 GSPEVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGTMNAPTVVALGVD 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A ++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y Sbjct: 297 ETALRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQ 350 >gi|325981881|ref|YP_004294283.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212] gi|325531400|gb|ADZ26121.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212] Length = 379 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 109/367 (29%), Positives = 188/367 (51%), Gaps = 35/367 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ +TE + +++E A EG S+E + F+ ++A + +L Sbjct: 1 MSE-ESDLERTEEATPRRLEKAREEGQVVRSQELTSFTLLMAAAVGIL------------ 47 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY---------L 111 +L SA KL I L S L+I F + G+ S + Sbjct: 48 ----MLGSALMEKLVKIMQSGMQLDRELAFQSELMINRFYEFAIEGLISMAPLLFLLLVV 103 Query: 112 IQRIPVL------NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 P+L + V P FKR+ +G RI+S+ +L+ +K+ +K IL+G + + Sbjct: 104 AFFAPMLLSGWLVSAKAVIPDFKRIDPIKGFGRIFSMRSLIELVKAILKTILIGGVAALV 163 Query: 166 LTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 + N +++ ++ + I F L++I I + V D+ + + +L+M Sbjct: 164 IWHNKDSVMALLTVSIDLGISRTGDFLAMSFLLIISAMIIIVAV-DVPFQIWEHAKQLRM 222 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +K++++ E K+S G+P +K R +++ R R +MM +A +I+TNPTHYA+ALRY Q+ Sbjct: 223 TKEDVRKEYKESEGDPYVKARIRNLQREAARRRMMSEIPKADVIVTNPTHYAVALRY-QS 281 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 AP +VAKG +L+A ++R+IA EH IPI E P LAR+L+ + S IP Y AVA+ Sbjct: 282 NMRAPKVVAKGVHLLAARIREIATEHRIPILEAPPLARALYHHTELESEIPEKLYTAVAE 341 Query: 345 LIYKIYH 351 ++ ++ Sbjct: 342 VLAYVFQ 348 >gi|319790410|ref|YP_004152043.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans HB-1] gi|317114912|gb|ADU97402.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans HB-1] Length = 347 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 189/355 (53%), Gaps = 26/355 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASL-FSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 +KTE + ++ + A EG S++ S+ FS +L + LFF+ P ++ L + Sbjct: 6 SKTEKATPRRRQKAREEGQVLRSQDLSIAFSLVLVAVT--LFFYLP--FAFRELLKLFNY 61 Query: 68 SATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +++ VF+ L L+L L P L+ ++ G+ S ++Q + L + P Sbjct: 62 TFEELPFLELNQFVFVSLEILAL----LTFPVFLVLLVGGVLSNVVQFGFLFTLKPLVPK 117 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI--ITISLTENYFTMLDFISANPHSI 184 ++ +G +R++S+ L +KS VK+ + + YFT S + Sbjct: 118 LDPINPVKGFQRLFSLKTLFELVKSLVKLGFASAVGYFAVKYLTRYFT-----SYASFPL 172 Query: 185 LYHAFFTVRKVLIMILLF------IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 ++ + ++++++ F +A L L W Y + LKMSKQE+K+E KQ G Sbjct: 173 EVQLYYLAKSLVVLVVAFALLAVPVAGLDFLYRRWEYEE---NLKMSKQEVKEERKQYEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK+ + R +MM +A ++ITNP HYA+AL+Y + + AP +VAKG + Sbjct: 230 HPLIKSEIRKRQRQLAMRRMMAEVPKADVVITNPEHYAVALKYERGKMYAPKVVAKGVDS 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+++IA EH +P+ E P LAR+L++ + IP FY+AVA+++ KIY ++ Sbjct: 290 VALKIKEIALEHGVPVEENPPLARALYESCEVGDFIPEEFYRAVARILAKIYRRR 344 >gi|167464149|ref|ZP_02329238.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 363 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 142/232 (61%), Gaps = 2/232 (0%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K F +++ EG KRI+S+ +++F+KS +K+I++ I+ +++ ++ Sbjct: 129 LKMKFNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQ 188 Query: 183 SIL-YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +L Y TV+ L + + IA + LD + ++ L+MSKQEIKDE K+S G+P+ Sbjct: 189 DMLPYIGSLTVQLGLKIGGVLIA-IAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPL 247 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK + + R +MM+ +A +IITNPTH+A+ALRY E +AP ++AKG +LIA Sbjct: 248 IKGKIRERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIAL 307 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++++A E+ + I E LAR+L+ QV I AIP ++AVA+++ +Y K Sbjct: 308 KIKEVAKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 359 >gi|224419239|ref|ZP_03657245.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT 98-5491] gi|253826957|ref|ZP_04869842.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313142741|ref|ZP_07804934.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT 98-5491] gi|253510363|gb|EES89022.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313131772|gb|EFR49389.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT 98-5491] Length = 357 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 188/359 (52%), Gaps = 32/359 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA--CLIYLLF-FFSPGIYSVTSDLHV 64 + KTEAPS++KIE A EGN S + + F ++ LI+L F F+ G+ ++ +++ Sbjct: 5 EEKTEAPSARKIEKAREEGNVIKSPDVNAFLGLVVGLVLIFLCFNFWVDGLSAIFFEVYH 64 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + R S+ + L L L+ P M+ GI + + Q +L ++ Sbjct: 65 IFNQDLTR-----SNAISLTISLVFKILYLLAPIFGALMLIGIVANISQSGFLLTTKAIQ 119 Query: 125 PSFKRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P ++++ G+K I S+ L++ F+ +F +L II +F L F+ Sbjct: 120 PKLQKLNFISGLKNIISLKKLLDGFLITFK--VLTAFIIA------FFVFLGFM----KE 167 Query: 184 ILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + + F + +I + L F + + D +Q++ L+MSKQE+KDE Sbjct: 168 LTTVSLFPIGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDE 227 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K G+ +K + +S+ + +MM+ A +++TNPTHYA+ALRY T+ AP ++ Sbjct: 228 FKNQEGDQQVKGKIRSLMFQAAKKRMMQNIPNADVVVTNPTHYAVALRYDSTKERAPRVL 287 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 AKG + +A+++++IA E+ IPI E P LAR+L+K V I+ IP Y+A+ +++ K+ Sbjct: 288 AKGVDFLAQRIKEIAKENEIPIIENPPLARALYKDVDIDKEIPETLYQAMVEILIKVQQ 346 >gi|115523575|ref|YP_780486.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisA53] gi|115517522|gb|ABJ05506.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisA53] Length = 356 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 188/346 (54%), Gaps = 3/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ + KTE P+ K+++DA G+ S+E + + I + L F + + Sbjct: 1 MSDDDSSE-KTEDPTQKRLDDAHQRGDVAKSQEVNTWFVIAGGTLVLSSFSGSIGAGLQN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL ++ + + + T + + + L +P LL+ M+ + ++Q V + Sbjct: 60 PLRNLLENSWMIRTDGPGLLALAQTLIYVVIAALGVP-LLMLMIAAVAGNVLQHRLVFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F ++S +G KR++ F+K KII +G ++ L + + + Sbjct: 119 EGLKPKFSKLSPMQGAKRLFGKQAWATFLKGLFKIIALGAVMVAVLWPERHRLEAMVRFD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ ++L ++ +A + V D + Y WY K KMS QEIK+E KQS G+P Sbjct: 179 VAALMGTTITLTLQLLGAVVAMLAAVAVADFFFQYRTWYEKQKMSLQEIKEEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R+R +MM A +A+++ITNPTHY++AL Y ++ APV VAKG + +A Sbjct: 239 HIKGKLRQLRMQRMRQRMMAAVPKASVVITNPTHYSVALSY-ESGMQAPVCVAKGADAVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R++A +++PI E LAR+L+ V I+ +P Y AVA++I Sbjct: 298 LKIREVAKANDVPIVENVPLARALYATVKIDEEVPVEHYHAVAEVI 343 >gi|242309640|ref|ZP_04808795.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT 98-5489] gi|239523641|gb|EEQ63507.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT 98-5489] Length = 354 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/360 (30%), Positives = 184/360 (51%), Gaps = 30/360 (8%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILA--CLIYLLF-FFSPGIYSVTSDL 62 A + KTEAPS++KIE A EGN S + + F ++ LI+L F F+ GI ++ + Sbjct: 2 ADEEKTEAPSARKIEKAREEGNVLKSPDVNAFLGLVVGLVLIFLCFNFWVDGISNIFFQI 61 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 + R S + + L+ L+ P ++ GI + + Q +L Sbjct: 62 YNSFNQDLTR-----SDAISITISLTFQILYLLAPIFGALVLTGIVANISQSGFLLTTKA 116 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P ++++ GIK I S+ L++ F+ V T I+ +F L F+ Sbjct: 117 IQPKLQKLNFITGIKNIISLKKLLD---GFLITFKVMTAFIIA----FFVFLGFM----K 165 Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + F + +I + L F + + D +Q++ L+MSKQE+KD Sbjct: 166 ELTTVSLFPIGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKD 225 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G+ IK + +S+ + +MM+ A +++TNPTHYA+ALRY T+ AP + Sbjct: 226 EFKNQEGDQQIKGKIRSLMFQAAKKRMMQNIPSADVVVTNPTHYAVALRYDSTKERAPRV 285 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + +A++++ IA EH IPI E P LAR+L+K V I+ IP Y+A+ +++ K+ Sbjct: 286 LAKGVDFLAQRIKDIAKEHEIPIIENPPLARALYKDVDIDKEIPETLYQAMIEVLIKVQQ 345 >gi|323158635|gb|EFZ44649.1| flagellar biosynthetic protein FlhB [Escherichia coli E128010] Length = 382 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/367 (29%), Positives = 197/367 (53%), Gaps = 35/367 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 56 ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 +S+ +D +++L E + ++ L++ + L A L+ P +L ++F Sbjct: 59 MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFS 116 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 S ++P F +++ GIKR++S +K+ +K ILVG++ L Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFL 163 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 ++ M+ ++ +P + + +A V +++++L + + D+ + KL+MS+ Sbjct: 164 WHHWPQMMRLMAESPITAMGNAMDLVGLCVLLVVLGVIPMVGFDVFFQIFSHLKKLRMSR 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKM 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343 Query: 347 YKIYHKK 353 ++ K Sbjct: 344 AWVWQLK 350 >gi|291558215|emb|CBL35332.1| flagellar biosynthetic protein FlhB [Eubacterium siraeum V10Sc8a] Length = 353 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 182/351 (51%), Gaps = 6/351 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + KK +D +G S+E ++ ++ +L F G Y L+ + Sbjct: 2 AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIF---GNYMFQMLLNFM 58 Query: 66 LASAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + + + + + +++ V P L + ++ + ++Q + ++ + Sbjct: 59 EQSMSSIDKTGNTVEFAMSVFWKVAIICVCTVGPILAVGVVLSVLPVIVQTKGLFSMEAM 118 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP F R++ GIKR++S+ LV +K ++II+V I+ + + I + Sbjct: 119 KPKFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIK 178 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I+ + T +++ I + + + D + + + KLKMSKQE+KDE KQ G+P IK Sbjct: 179 IVAYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIK 238 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKK 302 + K + + +MM+ A +++ NPTHYA+AL+Y +T APV+VAKG + +A + Sbjct: 239 GKIKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALR 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A EHN+ I E LAR L++ V I IP FY AVA+++ +Y ++ Sbjct: 299 IVAVAEEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVYEEQ 349 >gi|317051542|ref|YP_004112658.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5] gi|316946626|gb|ADU66102.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5] Length = 354 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/372 (30%), Positives = 187/372 (50%), Gaps = 47/372 (12%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ KTE P+ KK+E A EGN S++ S + + A ++ L F LH Sbjct: 4 ESDQEKTEEPTPKKLEKAREEGNVAKSKDMSDTAVLFAGVMTLYF------------LH- 50 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL------ 118 +R LE F + L +R P + FGI + L+Q + +L Sbjct: 51 ------ERMLEGF----FAIMRNYLDLTRNTFPTINEMPSFGI-TILLQMLHILWPLFLA 99 Query: 119 --------NLNH---------VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161 N+ V P + +++ +GI + +S+ NL+ KS +K+ + G + Sbjct: 100 LTLFALAINIGQIGLLWSSKAVAPKWSKLNPIKGIAQKFSLKNLIEVTKSLLKVSVFGPV 159 Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 + + ++L + P I A + K+ I I+L + ++ +D + +Q + K Sbjct: 160 AYFIAKDEFGSILMMMHLTPIEIFATALMIIFKIWITIILIMLIVSAVDFYFQKYQHHEK 219 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 LKMSKQE+K+E KQ GNP +K R +S+ R +MM ++ ++ITNP A+AL+Y Sbjct: 220 LKMSKQEVKEERKQMDGNPEVKQRIRSLQREMAMKRMMGDVPKSDVVITNPLFLAVALKY 279 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 AP LVAKGQ L+A+++R +A EH+IPI ++P LAR L+ + I Y+A Sbjct: 280 DTEVKAAPYLVAKGQELVAQRIRDLALEHDIPIQQDPLLARQLYDSLEPGDEITHELYQA 339 Query: 342 VAQLIYKIYHKK 353 VA+++ +IY +K Sbjct: 340 VAEILAEIYRQK 351 >gi|117617532|ref|YP_855917.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558939|gb|ABK35887.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 376 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 179/357 (50%), Gaps = 16/357 (4%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D +TE P+ K+++ A +G S+E S +LA + LL S+ + Sbjct: 3 DTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKE----SLAGAMVK 58 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN--- 121 +L E ++T L L+ P LLFM+ I ++ + I + +N Sbjct: 59 VLTMGFTLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAF-VGNILMGGMNFSS 117 Query: 122 -HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179 + P + ++S GIKR++ + +LV +KS K++ + L+ + +L+ + Sbjct: 118 EAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEG 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSY 237 P I+ + ++I+L A + ++ I + QW +LKM+KQE+KDE K S Sbjct: 178 YPGGIIDALDLLL---WMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSE 234 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQ 296 G P +K R + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG Sbjct: 235 GKPEVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGT 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA K+R+IA E+ IP+ P+L R+++ I IP + AVAQ++ +Y K Sbjct: 295 DEIAMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 351 >gi|54307250|ref|YP_128270.1| FlhB flagellar biosynthetic protein [Photobacterium profundum SS9] gi|46911670|emb|CAG18468.1| Hypothetical FlhB flagellar biosynthetic protein [Photobacterium profundum SS9] Length = 375 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 117/364 (32%), Positives = 194/364 (53%), Gaps = 28/364 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 MSEN + D KTE PS +K+ A EGN P S+E + ++ A L LL FS + + Sbjct: 1 MSENSSQD-KTEQPSQQKLRKAREEGNLPRSKELVTALMTLGAAL--LLSAFSSDLAHMF 57 Query: 60 SDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRI 115 ++ L LA + E F+L HLS S + ++ P L ++ I + +I+ Sbjct: 58 DEVATLNLALPKKAAFEP----EFMLKHLSFSLTSMIFTISPIFGLLLLVTILANIIRGG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +++ +P +++ GIKR++S +LV +KS +K+ L+G + L+ N+ T + Sbjct: 114 WNISVTAAQPKLSKLNPLSGIKRMFSTKSLVELVKSILKVSLIGGTLYWLLS-NHLTQII 172 Query: 176 FISANPHS--------ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + P + IL+ F+ + LL IA L + GW Y + +LKM+KQ Sbjct: 173 ALQRLPMTEAILQTVDILWQGLFSFG----LALLLIAVLELPYAGWDYTK---QLKMTKQ 225 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+K+E K S G P +K + + + + + +M + +A ++ITNPTHYA+AL+Y + Sbjct: 226 EVKEEHKNSEGKPEVKAKIRQLQQQMSQRQMHKTVPQADVVITNPTHYAIALKYDLDKAS 285 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP ++AKG + +A +MRKIA HN PI E P+L R+++ IP Y AVA ++ Sbjct: 286 APFVLAKGTDQMALEMRKIARHHNCPIVEIPALTRAVYYSTNEWQEIPAPLYVAVAHILT 345 Query: 348 KIYH 351 ++ Sbjct: 346 FVFQ 349 >gi|78355426|ref|YP_386875.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217831|gb|ABB37180.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 357 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/356 (30%), Positives = 188/356 (52%), Gaps = 22/356 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M + D ++TE + K+ A EGN P S+E +A I L+ + I S Sbjct: 1 MPQQDP--SRTEQATPKRRRKARGEGNVPKSQEVPKTFVTMAGTI-ALYVYMDHIASEMM 57 Query: 61 DLH------VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 L+ ++ AT + + D LL +S + +++P ++LF+ + +Y++ R Sbjct: 58 GLYEHFFRNAVMFEATPQAVYD------LLLWISGKLALMLLP-IMLFL--ALVAYVVIR 108 Query: 115 IPVLNL---NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENY 170 + V L KP F R +L +G+KR++ S L+ KS + ++G I + Sbjct: 109 LQVGKLWAPKVFKPKFARFNLIKGLKRLFISPQTLIRLGKSILMAAVIGIAPYIVIRNEM 168 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 L A P +I + K++ +L + + + D+ ++ + LKM+K E+K Sbjct: 169 HHFLPLFYATPTAIGVYMLEMGMKMVKYAMLPMLVIAIADLWYTRWDYEENLKMTKDEVK 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ+ G+P +K +Q+ + +M+E +A +++TNPTHYA+ALRY E APV Sbjct: 229 DERKQAEGDPAVKAQQRQKMMEVMAQRMLENVPKADVVVTNPTHYAVALRYDAVEAPAPV 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++AKG + +A++++++A EH +PI E LAR+L++QV + IP Y+AVA L+ Sbjct: 289 VLAKGVDHLAERIKEVAREHRVPIRENVPLARALYRQVEVGDMIPEELYQAVASLL 344 >gi|149908444|ref|ZP_01897107.1| flagellar biosynthesis protein [Moritella sp. PE36] gi|149808607|gb|EDM68542.1| flagellar biosynthesis protein [Moritella sp. PE36] Length = 376 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 105/356 (29%), Positives = 188/356 (52%), Gaps = 12/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +TE + KK+ A +G S+E + + A L F ++ Sbjct: 1 MAEKDG-QEQTEDATEKKLTQAREKGQVVRSKELATTFVLTATGAAFLAFGD----ALAR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFG--IGSYLIQRIP 116 L + + S Q + EDI LL +S+S L P G+++ F IG+ L+ + Sbjct: 56 ALVINMTSLFQLEREDIFSPDALLEIVSVSIKPLFWPMFGIMIVGFFAGIIGNILMGGM- 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P ++S + G+KR+ +V +KS K+ +V TI + L + +++F Sbjct: 115 VFSGESIRPKASKMSPKAGLKRMMGPQAMVELIKSIAKVAVVVTIALLVLKVQFLQIMEF 174 Query: 177 ISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 S P +I + + + V I + + + +D+ + Y + +L+M+KQE+KDE+K Sbjct: 175 -SLQPLNISIIQSLNFLTDVFIWLCASLIIIVAIDVPYQYWKHAKELRMTKQEVKDEMKD 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 GNP +K + + + + +MM A +IITNPTHY++AL+Y ++ N AP +VAKG Sbjct: 234 VNGNPQLKGKIRQMQMEISQRRMMGDVPDADVIITNPTHYSVALKYEKSGNAAPKVVAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A ++R++A EH +PI E +L R+++ I+ IP + AVAQ++ +Y Sbjct: 294 VDQVAFRIREMAKEHKVPILESAALTRAIYHSTEIDDPIPEGLFIAVAQILAYVYQ 349 >gi|186477710|ref|YP_001859180.1| flagellar biosynthesis protein FlhB [Burkholderia phymatum STM815] gi|184194169|gb|ACC72134.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815] Length = 411 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/365 (29%), Positives = 187/365 (51%), Gaps = 35/365 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD-L 62 D+ KTE+ + +++E A EG SRE + F+ L+ F + G+ + + + Sbjct: 12 EDSDLEKTESATPRRLEKAREEGQVARSRELATFA-----LVAAGFLGAWGMSGMIGEHV 66 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-------------LLLFMMFGIGS 109 +L +A E VF +SA + G L +G Sbjct: 67 QTMLRTAFTFNHE----TVFDPKRAFISAGAVTREGAYMLMPLLALLGLAALLAPMAMGG 122 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 +L L+ + P+F+R++ G+ RI+SIN + S KI++VG I +++ Sbjct: 123 WL------LSTKSLAPNFQRLNPVSGLGRIFSINGWIQLGMSLAKIVVVGLIGGLAIWHR 176 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSK 226 +L + H L +A + M + + L +D+ WS+H+ KL+M+K Sbjct: 177 REDILALATQPLHVALSNAGHLIAVCCAMTVGGMFLLAAMDVPYQLWSFHK---KLRMTK 233 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 +E+K E ++S G+P +K R +S R+ R +MM +A +++TNPTH+A+AL+Y E Sbjct: 234 EEVKREHRESEGDPHVKARIRSQQRAMARRRMMANVPKADVVVTNPTHFAVALQYTDGEM 293 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG NL+A ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ Sbjct: 294 GAPKVVAKGVNLVAARIRELAVENNVPLLEAPPLARALYHNVELNREIPGALYGAVAEVL 353 Query: 347 YKIYH 351 +Y Sbjct: 354 AWVYQ 358 >gi|187926251|ref|YP_001892596.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J] gi|241665739|ref|YP_002984098.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D] gi|187728005|gb|ACD29169.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J] gi|240867766|gb|ACS65426.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D] Length = 387 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 180/367 (49%), Gaps = 50/367 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S +++E A EG+ P SRE + F+ L S G V D V AS Sbjct: 8 EKTEPASPRRLEQAREEGDVPRSRELASFA---------LTAVSAGGLWVMGDSIVRAAS 58 Query: 69 A-TQRKLE-----------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + R LE +++ L+++ + GL+L ++ S L Sbjct: 59 SFLARCLEFHRYNYTSGQDQWNYVTGQFMPLAMT-----LGGLMLMLVIAALSPLALTRG 113 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV------------GTIITI 164 ++ + P R+ +G+ R++S+ L+ + +K+ L+ G +I + Sbjct: 114 AISFKPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIEL 173 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 + M D + + AF + V++++ +D+ S Q+ K +M Sbjct: 174 PQQDLGVAMRDTLH-----VAGVAFLCMAAVMMLV-------AAVDVPLSLWQYARKHRM 221 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +K+E++ E ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + Sbjct: 222 TKEEVRKEHRESEGDPHVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEK 281 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E AP ++AKG +++A K+R++ EH IPI E P LAR+L++ I IP Y AVA+ Sbjct: 282 EGGAPRVLAKGADMVAAKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAE 341 Query: 345 LIYKIYH 351 ++ +Y Sbjct: 342 VLAYVYQ 348 >gi|94500293|ref|ZP_01306826.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp. RED65] gi|94427592|gb|EAT12569.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp. RED65] Length = 375 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 192/365 (52%), Gaps = 29/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE P+ ++++ A ++G P S+E S S +L + ++ + ++S Sbjct: 1 MAENENSQEKTEEPTPRRLQKAKDDGQIPRSKELST-SLVLIVGVLSIWLLADLLFSGAK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPV 117 ++ + ++ D +L HL SA ++ P ++L ++ + L + Sbjct: 60 NIFQYNFVIEREQIFDEKQ---MLKHLGASAYEAILTMTPTMMLILLAAALAPLALGGWM 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFTMLDF 176 + + P R+S G+KR++ + +LV +KS+ K+++V G T L F Sbjct: 117 FSGKALLPKANRISPLSGLKRMFGVKSLVELIKSWAKVLVVIGC-----------TFLLF 165 Query: 177 ISANPHSILYHAFFTVRKV-----LIMILLFI---ATL--TVLDIGWSYHQWYSKLKMSK 226 N + H R + L+M+ FI +TL +V+D+ + +++ K++MS Sbjct: 166 FIFNDKVLFLHREPGTRAIADSADLVMLCAFILACSTLLVSVIDVPYQIYEYMQKMRMSL 225 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE K++ G P +K R + + + +MM+ A ++ITNPTHYA+AL+Y + Sbjct: 226 QEVKDEHKETEGKPEVKQRIRRLQYEMSQRRMMDDVKDADVVITNPTHYAVALKYDSDQM 285 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP++VAKG + +A K+R+IA ++ I + E P LARS++ I IP Y AVAQ++ Sbjct: 286 GAPLMVAKGTDEVALKIREIAKQNKIAVVEAPPLARSIYAFTKIGKEIPEGLYVAVAQVL 345 Query: 347 YKIYH 351 +Y Sbjct: 346 AYVYQ 350 >gi|269103165|ref|ZP_06155862.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163063|gb|EEZ41559.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp. damselae CIP 102761] Length = 376 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 192/360 (53%), Gaps = 16/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+++D +TE + ++ + A +G P SRE + + ++A + L++F + + Sbjct: 1 MADSD-DQERTEDATPRRRQQAQEKGQVPRSRELASVAVLIAGAVGLMWFGGSLGQALAA 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIP 116 V S L L T+ ++ D+ + +++ + A+ L + + LF+ IG+ + + Sbjct: 60 VMSRLFSL----TREEVFDLGAMSTVISEVIWGIAAPLTLVLVFLFVAAFIGAAGLGGV- 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + P +++ G KR++ + + V +KS +K VG + ++ Y ++ DF Sbjct: 115 RFSSEAAMPKLSKMNPLSGFKRMFGMQSWVELIKSILK---VGLVSGVAYYLMYDSLDDF 171 Query: 177 ISANPHSI---LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 S +YHA T+ +++I + + +D+ + +Q+ +LKM+KQEIKDE Sbjct: 172 FQLAQESYPNNIYHALSTLLHFILLISCSLLVVVAIDVPFQIYQFNQQLKMTKQEIKDEY 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G P +K R + + R + +MM +A +IITNP HY++ALRY + APV++A Sbjct: 232 KETEGKPEVKGRIRMLQREMAQRRMMADVPQADVIITNPEHYSVALRYDPKLDSAPVVIA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + A K+R+IA EHNI I P LAR+++ + IP + AVAQ++ ++ K Sbjct: 292 KGVDHTAFKIREIAKEHNIDIVPVPPLARAIYHTTELEQQIPDGLFIAVAQVLAYVFQLK 351 >gi|167750709|ref|ZP_02422836.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702] gi|167656388|gb|EDS00518.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702] Length = 353 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 182/351 (51%), Gaps = 6/351 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + KK +D +G S+E ++ ++ +L F G Y L+ + Sbjct: 2 AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIF---GNYMFQMLLNFM 58 Query: 66 LASAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + + + + + +++ V P L + ++ + ++Q + ++ + Sbjct: 59 EQSMSSIDKTGNTVEFAMSVFWKVAIICICTVGPILAVGVVLSVLPVIVQTKGLFSMEAM 118 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP F R++ GIKR++S+ LV +K ++II+V I+ + + I + Sbjct: 119 KPKFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIK 178 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I+ + T +++ I + + + D + + + KLKMSKQE+KDE KQ G+P IK Sbjct: 179 IVAYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIK 238 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKK 302 + K + + +MM+ A +++ NPTHYA+AL+Y +T APV+VAKG + +A + Sbjct: 239 GKIKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALR 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A EHN+ I E LAR L++ V I IP FY AVA+++ +Y ++ Sbjct: 299 IVAVAQEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVYEEQ 349 >gi|320015476|gb|ADV99047.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 259 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 129/219 (58%) Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194 G+KR++S L +K+ +K LVG + + L N+ M+ I+A P + L A + Sbjct: 6 GLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIF 65 Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 ++++L ++ + D+ + KL+M+KQ+I+DE K G+P +K R + R+ Sbjct: 66 CGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQRAMA 125 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A ++R++ EH IP+ Sbjct: 126 RRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPL 185 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 186 LEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 224 >gi|146307831|ref|YP_001188296.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp] gi|145576032|gb|ABP85564.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp] Length = 378 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 193/362 (53%), Gaps = 23/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ K+E P+SK++E++ +G S+E + + L + L+ F G Y Sbjct: 1 MAESESGAEKSEEPTSKRLEESRKKGQIARSKELNTLAVTLTGTVALIIF---GAYMGNV 57 Query: 61 DLHVLLASATQRK---LEDISHIVFLLTHL--SLSASRLVIPGLLLFMMFG---IGSYLI 112 + ++ + + + + + S ++LL +L A + + LL+ + G +G +L Sbjct: 58 LMDLMRGNFSLPREVLMHEGSMALYLLASGKHALVAIQPLFLALLIASVIGPIALGGWL- 116 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 + ++P R++ G+KR++S+ LV +K+ K +++ + + L + Sbjct: 117 -----FSAEALQPKASRMNPLAGLKRMFSVQALVELLKALAKFLVILAVALVVLALDQDD 171 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 +L + + H+ V + L+ IA + V WS+ Q KLKM+KQE+ Sbjct: 172 LLAIANEPVEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQ---KLKMTKQEV 228 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE K + G P +K R + + R +MM+A +A ++ITNPTH+A+AL+Y + AP Sbjct: 229 RDEYKDTEGKPEVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAP 288 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +L+AKG + +A K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ + Sbjct: 289 MLLAKGGDFLALKIREIAQEHKVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYV 348 Query: 350 YH 351 Y Sbjct: 349 YQ 350 >gi|308050045|ref|YP_003913611.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] gi|307632235|gb|ADN76537.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] Length = 374 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 188/359 (52%), Gaps = 29/359 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57 MS++ A +KTE + ++I+ A +G P S++ + + + C + LL +F+ G Sbjct: 1 MSQSAA--DKTEKATPQQIKKAREKGQVPRSKDLATAALFIGCALMLLASADWFARG--- 55 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQR 114 T+DL S T+ ED+ ++ H+ S L+ P LL + + + + Sbjct: 56 -TADLLRYNMSLTR---EDLMAPDVMVRHVGASLVAMINLLSPLFLLIAVLALVAGALPG 111 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTI------ITISLT 167 P+L+L + + R+ GIKR++S+ +LV +KS +K+ L+ GT+ L Sbjct: 112 GPLLSLKNAEFKGSRIDPIAGIKRMFSMKSLVELIKSILKVSLILGTLYFLLRGRLEGLL 171 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 Y LD A S L T L ++LLFIA ++D+ W + +LKM++Q Sbjct: 172 GLYRMPLDQAVAEGVSFLAFGILT----LGVVLLFIA---LIDVPWQIYDHQKELKMTRQ 224 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 ++KDE KQ G P +K R + I + R + A +A +++TNP HYA+AL+Y D Sbjct: 225 QVKDEHKQMEGKPEVKARIRQIQQKMARSRAETAIPKADVLLTNPQHYAIALKYEPDRAD 284 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP ++AKG + +A MR++A H + I E P LAR+++ ++ +P Y A+AQ++ Sbjct: 285 APFVLAKGTDELALHMRQLARRHGVEIIEAPPLARAVYHSTQVDQMVPQALYVAIAQVL 343 >gi|82702438|ref|YP_412004.1| flagellar biosynthesis protein FlhB [Nitrosospira multiformis ATCC 25196] gi|82410503|gb|ABB74612.1| flagellar biosynthetic protein FlhB [Nitrosospira multiformis ATCC 25196] Length = 392 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/361 (29%), Positives = 189/361 (52%), Gaps = 22/361 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ +TE S +++E + EG AP S E S F+ ++A L ++S Sbjct: 1 MSE-ESDQERTEPASPRRLEKSREEGQAPRSTELSTFALLIAAGTGLWLMGG----HLSS 55 Query: 61 DLHVLLASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L L+ E + + + L S A P L+L ++ + + ++ + Sbjct: 56 QLARLMKEGMHIPRETGFEPARLAERLFDQSFHALITFAPFLILMILVALVAPMLLSGWL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P FKR++ G+ R++S+++L+ K+ +K L+G ++ ++L I Sbjct: 116 FSWKSLNPDFKRINPLSGLSRMFSLHSLLELAKALLKAALIGGAGVWTIWHYKESVLSLI 175 Query: 178 SANPHSILYH-------AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 + L H +FF++ +I+I AT+ V W + Y KL+M+K+E++ Sbjct: 176 ARPLVPGLTHMGELVALSFFSIAGTMILI----ATVDVPFKLWDH---YRKLRMTKEEVR 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E K++ GNP IK R ++ R R +MM RA +IITNPTHY++ALRY + AP Sbjct: 229 QENKETEGNPQIKGRIRAQQREMARKRMMTEIPRADVIITNPTHYSVALRYEDGKMRAPR 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG +L+A K+R+I ++H +P+ E P LAR+L++ + IP Y VA+++ +Y Sbjct: 289 VVAKGMHLLALKIREIGHQHKVPVLEAPPLARALYQHTELGDEIPQTLYNVVAEVLAYVY 348 Query: 351 H 351 Sbjct: 349 Q 349 >gi|292669764|ref|ZP_06603190.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541] gi|292648561|gb|EFF66533.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541] Length = 374 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 177/350 (50%), Gaps = 7/350 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + S+ + + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFSLKLLWDSIYLSIATYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 ++ Q D +I+ + + + ++ P +L M+ G+ Q LN + Sbjct: 84 FSNLNQ--TVDTENIIRIFIGIIIVLAKTAFPIMLFIMVIGLAINFFQ--VGLNFSAESI 139 Query: 126 SFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 FK L G RI+S LV KSF KII++G + + E M F+ + + Sbjct: 140 EFKLDKLNPINGFGRIFSKRALVELAKSFFKIIVIGFFLYRFIHEQILAMPQFMFFDLTT 199 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L + ++ +++ I + D G+ Q LKM+KQE+KDE+KQ+ G+P IK Sbjct: 200 SLALVAEIIFQMAFIVIGVIMIMAFCDYGYQRWQTTQDLKMTKQEVKDEMKQTEGDPQIK 259 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 + + R +MM+ +A +IITNPTHYA+AL Y Q AP +VAKGQ+L+A+++ Sbjct: 260 GKIRQKQRQMAMARMMKEVPKADVIITNPTHYAVALSYEQGMV-APTVVAKGQDLVAQRI 318 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++I + +PI E LAR+L+ V + A+P Y+AVA+++ +Y K Sbjct: 319 KEIGRDARVPIIENKPLARTLYAAVQVGDAVPHELYQAVAEVLAYVYRLK 368 >gi|87119470|ref|ZP_01075367.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121] gi|86164946|gb|EAQ66214.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121] Length = 380 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/377 (31%), Positives = 193/377 (51%), Gaps = 49/377 (12%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLF-------------SSILACLIYL 47 M+EN+ KTE SSKK+++A N+GN P S++ S S+LA + Sbjct: 1 MAENEDGAEKTEDASSKKLDEARNKGNLPRSKDLSSALLLLIAAASLYATGSLLAQDMSN 60 Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107 +F F + +L+ A D+ ++ HLS S+ ++ L++ ++ I Sbjct: 61 VFQF-----------NFVLSRA------DMFDTAKMVIHLSDSSISMMDSLLVMMIVLAI 103 Query: 108 GSYLIQRIPVLNLNH----VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI-- 161 ++ + + N + P +++ GIKR++S+N+LV +KS K+ LV + Sbjct: 104 AG-IVGSVALGGFNFSWEPLIPKLSKMNPISGIKRMFSVNSLVELLKSIAKVSLVLVVAF 162 Query: 162 --ITISLTENY---FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216 + I L E F L+ + +++ AF V + +L IA + V WS+ Sbjct: 163 FVLKIYLPEMLLVPFQSLELALGHAINVVIWAFIYVS----LAVLLIAAVDVPYQAWSHK 218 Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276 KLKM+KQE KDE K + G+P IK R + R +MME A +IITNPTH++ Sbjct: 219 ---DKLKMTKQETKDEYKNAEGDPQIKARIRQAQRQASMRRMMEDVPNADVIITNPTHFS 275 Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL+Y AP L+AKG + +A K+R+I HNIP+ + P+LARS++ I IP Sbjct: 276 VALKYEAGVKGAPKLLAKGNDFVALKIREIGTFHNIPVVQSPALARSIYHYTEIGEEIPT 335 Query: 337 VFYKAVAQLIYKIYHKK 353 +++VAQ++ +Y K Sbjct: 336 GLFQSVAQILAYVYQLK 352 >gi|167623392|ref|YP_001673686.1| flagellar biosynthesis protein FlhB [Shewanella halifaxensis HAW-EB4] gi|167353414|gb|ABZ76027.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis HAW-EB4] Length = 377 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 105/361 (29%), Positives = 183/361 (50%), Gaps = 21/361 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE +S+K++ A ++G S+E + ++A + LL P I Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMT-GPDIAQAMH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMF--GIGSYLIQRIP 116 ++ L + ++ ++ D ++ + + L +P G ++F+ G+ + I Sbjct: 60 NIMTKLFTMSRDEIFDTKQ---MMNVWGVIGTELALPLMGFIVFLALIAFAGNVALGGIS 116 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISLTENYFTML 174 ++ P ++S G KR++ + LV K K ++ + + +S N ML Sbjct: 117 -FSVKAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITAFLLLSTYLNDILML 175 Query: 175 --DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIK 230 D + N +YHA V V I ILL +T ++ I + W +LKM+KQE+K Sbjct: 176 SQDHLPGN----IYHALDIV--VWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVK 229 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE K + G P +K R + + + +MM A +I+ NP HYA+A++Y T + AP Sbjct: 230 DEYKDTEGKPEVKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPF 289 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG + +A K+R+IA EH++ I P LAR++F I+ IP + AVAQ++ ++ Sbjct: 290 VVAKGVDEVAFKIREIAREHDVAIVSAPPLARAIFHTTKIDQEIPEGLFTAVAQVLAYVF 349 Query: 351 H 351 Sbjct: 350 Q 350 >gi|150390466|ref|YP_001320515.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens QYMF] gi|149950328|gb|ABR48856.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens QYMF] Length = 361 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 5/347 (1%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLF--FFSPGIYSVTSDLHV 64 + KTE P+ KK +D+ +G S+E S F I A +I LF + + S T ++V Sbjct: 12 EEKTERPTPKKRKDSREKGQVLQSKELNSAFLLIGAFVILGLFSSYIGMTMKSFTRSIYV 71 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + L I ++ LL + + +++ P + ++ G+ +Q + + Sbjct: 72 EYLNTDY--LFSIQNLYRLLVYSLYNLLKIIAPISIASLLIGLAVSYLQVGYLFTTKTLA 129 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 +++ EG K+I+S+ +V KSF+KI LVG I+ T+ + ++ + I Sbjct: 130 FKLSKLNPIEGFKKIFSLKAIVELAKSFIKIGLVGYIVFQYAQGQLETIFNTMAMDMDGI 189 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + + + I + + L D + +++ LKM+KQE K+E KQS GNP IK+ Sbjct: 190 IQVLIYILVNIGIRAGVVLLVLAGFDYLYQKYEYDKNLKMTKQETKEEYKQSEGNPQIKS 249 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + K R +MM+ +A +IITNPTH+A+A++Y + AP ++AKGQ+++A+ ++ Sbjct: 250 KIKEKQRQMSTKRMMQEVPKADVIITNPTHFAIAIQYNPDDFQAPRVIAKGQDILAQSIK 309 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+ E+++PI E LARSL+ V I + IP Y+AVA+++ +Y Sbjct: 310 KVGLENDVPIVENKPLARSLYDTVEIGAFIPTELYQAVAEILAYVYR 356 >gi|319787087|ref|YP_004146562.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis 11-1] gi|317465599|gb|ADV27331.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis 11-1] Length = 379 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/368 (29%), Positives = 188/368 (51%), Gaps = 35/368 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGI-- 55 M+EN+ KTE P+ ++ E A+ +GN P SRE A LF S + ++ F+ G Sbjct: 1 MAENEDGQEKTEQPTGRRREKAIKQGNLPRSRELSNAVLFGSGVVAMMAGGSMFARGASG 60 Query: 56 ---YSVTSDLHVLLASATQ----RKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGI 107 ++T DL V+L S + + + ++ +L + ++ A+ V PGL+ F Sbjct: 61 WFRQALTPDL-VMLESPGELFGYMGILLLRLVLVMLPLIGVALAACFVAPGLMGGFHF-- 117 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 ++P +R++ G+KRI+S LV KS +++ L+ + L Sbjct: 118 -----------TTESLQPKPERLNPLAGLKRIFSSEGLVEVAKSLLRVALLVIACGLVLV 166 Query: 168 ENYFTMLDFISANPHSILYHAFFT----VRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + D + A P L A T ++L + + L + D + W KLK Sbjct: 167 HGF----DVLKAMPGQSLEDAASTGLHFAGRLLGAAAVALVLLALADAPYQKWNWTRKLK 222 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M++QE+++E+K++ GNP +K + + + + +MMEA A +++ NPTHYA+AL+Y Sbjct: 223 MTRQEVREEMKETDGNPQVKGKIRQMQFQMSQRRMMEAVPTADVVVVNPTHYAVALKYEG 282 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 AP +VAKG + +A ++R++A +H I P LAR+L+++ I+ IP Y AVA Sbjct: 283 GTMRAPKVVAKGVDEMAMRIREVADQHRIATVSAPPLARALYREGEIDKEIPVRLYAAVA 342 Query: 344 QLIYKIYH 351 Q++ +Y Sbjct: 343 QVLSYVYQ 350 >gi|77457779|ref|YP_347284.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf0-1] gi|77381782|gb|ABA73295.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens Pf0-1] Length = 379 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 181/356 (50%), Gaps = 11/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + + +LA LL F + Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTLAIMLAGSAALLIFGGMLAQELMD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115 + + + +++ S FL++ +L A + ++ LLL G +G +L Sbjct: 61 LMRQNFTLSREVIMDERSMATFLMSSGLQALLAIQPIMITLLLAAFLGPIALGGWL---- 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + P F R++ G+KR++S+ +V +K+ K ++ + + L + +L Sbjct: 117 --FAAGSLAPKFSRMNPAAGLKRMFSMKAVVELLKALAKFLITLGVALVVLNSDIDDLLR 174 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + H+ V + + + + +D+ + KLKM+KQE++DE K Sbjct: 175 IAHEPLDRAIIHSLQLVGWSSLWLACGLIIIAAVDVPVQIWESIKKLKMTKQEVRDEHKD 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G P +K R + + R + +MM A A ++ITNPTHYA+AL+Y + AP+L+AKG Sbjct: 235 QEGRPEVKQRIRQLQREMSQRRMMAAIPDADVVITNPTHYAVALKYDAEKGGAPMLLAKG 294 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R+IA +N+ + E P+LARS++ + IP Y AVAQ++ +Y Sbjct: 295 SDFLALKIREIAVANNVMLLESPALARSIYYSTELEEEIPGGLYLAVAQVLAYVYQ 350 >gi|326204607|ref|ZP_08194463.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM 2782] gi|325985174|gb|EGD46014.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM 2782] Length = 381 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 186/352 (52%), Gaps = 13/352 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL--HVLL 66 +KTE + KK DA +G SRE + S IL + + F IY+ S Sbjct: 30 DKTEKATPKKKSDARKKGQVFQSREVTA-SLILIVTVVAMRIFGGTIYAQLSQYLKKTFN 88 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 T + D + + L + + ++ V+P LL+ + + Q + + +K Sbjct: 89 EYLTIKDAIDFNILANLFIDVLMVLAKTVLPLLLVAFLTALIVNYAQVGILFTMETLKIK 148 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL- 185 R++ G KRI+S+ ++V +KS +KII+VG + L +L I + S+L Sbjct: 149 GDRINPLSGFKRIFSLRSVVELLKSIIKIIIVGWVAYSYLKSKTEQVLTLIDTDLMSVLI 208 Query: 186 --YHAFFTV--RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 A FTV R + M+LL A D + + + LKM+KQE+K+E KQ GNP Sbjct: 209 FIADAAFTVALRICMAMVLLGFA-----DYLYQRYDYEKNLKMTKQEVKEEYKQMEGNPE 263 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK++ K R +MM+ +A +IITNPTH+A+AL+Y ++ AP +VAKGQ+ IA Sbjct: 264 IKSKIKQKQRQMSLKRMMQDIPKADVIITNPTHFAVALKYDSEKSAAPFVVAKGQDYIAL 323 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++IA ++ + I E LAR+L+ V I AIPP Y+AVA+++ +Y+ K Sbjct: 324 RIKQIAADNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375 >gi|260886652|ref|ZP_05897915.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] gi|330839517|ref|YP_004414097.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] gi|260863795|gb|EEX78295.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] gi|329747281|gb|AEC00638.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] Length = 366 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/346 (28%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLA 67 KTE P++K+ DA +G S+E S +LA + S + + T +H+ Sbjct: 20 EKTEEPTAKRRNDARQKGQVARSQELSGAFVLLAGFFVMRALGSTILTEIETYTVHIY-- 77 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A + D ++ L+ + ++ P ++ ++ G+ Q + + Sbjct: 78 -ANMNQTVDAETVMRLIIDGMIVLAKTAFPVMIAILVMGLAINFYQVGFMFTTEPLSFKL 136 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ G RI+S ++V +KS +KI ++G + + L+ M +FI + S + Sbjct: 137 DKLNPITGFGRIFSKRSIVELLKSLLKIAIIGAFLYVYLSGEIMHMPEFIYLDLKSSMAR 196 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + ++ I++ + D + Q LKMSKQ+IK+E KQ+ G+P IK + + Sbjct: 197 MGDIIFSLVFQIIIVYFVMAAADFAYQKWQTTQDLKMSKQDIKEEFKQTEGDPQIKGKIR 256 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + ++MM+ A +I+TNPTHYA+AL+Y + AP +VAKGQ+L+A+K++ IA Sbjct: 257 QKQQQMAMNRMMKEVPEADVIVTNPTHYAVALKY-KAGMKAPEVVAKGQDLVAQKIKDIA 315 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH + I E LAR+L+ V + +PP Y+AVA+++ +Y K Sbjct: 316 REHRVTIVENKPLARALYAAVDVGGIVPPELYQAVAEVLAYVYRLK 361 >gi|254250896|ref|ZP_04944214.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124893505|gb|EAY67385.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 414 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 130/227 (57%) Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F R++ G+ RI+SI + S K ++VG I I++ + +L + + L Sbjct: 140 FDRLNPIAGLGRIFSIQGPIQLAMSVAKTLVVGGIGGIAIWRSKDELLGLATRPLGTALA 199 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K R Sbjct: 200 DALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRI 259 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++R++ Sbjct: 260 RQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARIREL 319 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 320 AAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366 >gi|304316890|ref|YP_003852035.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778392|gb|ADL68951.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 357 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 188/355 (52%), Gaps = 24/355 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-----PGIYSVTSDLH 63 KTE + K+ +DA +G SRE + S+I+ +L+ +F+ I ++ L Sbjct: 9 EKTEPATPKRRQDARKKGQVFQSREVT--SAIITIAGFLVIYFTVQNSIEEIMNLIKYLF 66 Query: 64 VLLASATQR--------KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + A+ KL +I VFL +L++P + + + S Q Sbjct: 67 LNYGGASDNTFTVNGIYKLFEIILPVFL---------KLILPTVATVFLVALVSTYAQVG 117 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + +R++ EGIKR++S ++ +K+ VKI ++G ++ L Y + Sbjct: 118 FVFTSESLNIKLERLNPLEGIKRMFSRRTILELLKAVVKIGILGYVMYSFLIGQYKGIPQ 177 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + + ++ ++ +L+ I + + L V+D + + + S L+MSK++IK+E K+ Sbjct: 178 LLDMSVQDLIKYSLNIFGGILLRIFIVLIVLGVVDYIFQWRDYESNLRMSKEDIKEEFKE 237 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + GNP IK+ K R +M++ +A ++ITNPTH A+AL Y NDAPV+VAKG Sbjct: 238 TEGNPQIKSEIKKKQRQISMRRMIQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKG 297 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 Q+ IA+++++ A +++I I E LA+SL+K I +IPP YKAVA+++ +Y Sbjct: 298 QDYIAQRIKEEAIKYSIAIVENKPLAQSLYKTTDIGDSIPPELYKAVAEVLAYVY 352 >gi|170743254|ref|YP_001771909.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46] gi|168197528|gb|ACA19475.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46] Length = 353 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 131/220 (59%), Gaps = 1/220 (0%) Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++RVS G+KR++ F K +K+ LVGT+ + L + + P ++L Sbjct: 126 WERVSPAAGLKRLFGPEAWFQFGKGILKVALVGTVAALVLWGDRDRLDALARLEPSALLP 185 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V +++ IL + + D + +W ++L+M+K EIK+E+K+S G+P +K R Sbjct: 186 ATLALVLRLMAGILAAYLVIALGDAAYQRLRWRARLRMTKAEIKEEMKESEGSPEVKARL 245 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + I +R + +MM A AT+++ NPTH+A+AL Y +T APV VAKG +++A ++R + Sbjct: 246 RRIRATRAKKRMMAAVPGATVVVANPTHFAVALLY-ETGMAAPVCVAKGVDVLALRIRAL 304 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A E+ +P+ E P LAR+L V I+ AIP YKAVA++I Sbjct: 305 AAENGVPVVENPPLARALHATVEIDQAIPTEHYKAVAEVI 344 >gi|194365643|ref|YP_002028253.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia R551-3] gi|194348447|gb|ACF51570.1| flagellar biosynthetic protein FlhB [Stenotrophomonas maltophilia R551-3] Length = 376 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 178/360 (49%), Gaps = 19/360 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57 MSE+++ KTE P+ K++ DA +GN P SRE A++F + + ++ + G + Sbjct: 1 MSEDESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-----FMMFGIGSYLI 112 S Q E H LL L + LV+ LL +M G+ Sbjct: 61 WMKHALSPEQSLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLLMGGL--RWS 118 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q+ + ++N + P G+KR+Y + F KS +++ VG + + + T Sbjct: 119 QKAMLPDINRMNPM-------SGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDT 171 Query: 173 MLDFISANPHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + I + + FT+R +L+ + L +D + W KLKM+++E++ Sbjct: 172 LRGLIHHPLETAITDGLSFTLR-LLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRR 230 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E+K+S G+P +K R + + + +MMEA A +++ NPTHYA+AL+Y +AP + Sbjct: 231 EMKESEGSPEVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPKV 290 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VA G + A ++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y Sbjct: 291 VALGVDETALRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQ 350 >gi|260438787|ref|ZP_05792603.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM 2876] gi|292808776|gb|EFF67981.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM 2876] Length = 370 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 190/361 (52%), Gaps = 16/361 (4%) Query: 5 DAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D P +TE ++KK++DA +G SR+ + S+L I L + ++ Sbjct: 12 DGPGGQRTEPATAKKLKDARKKGQVAKSRDLTSSVSLLVFFIILKIYVGTMGTKFINEFK 71 Query: 64 VLL-----ASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRI 115 V+ +AT +L +S F ++S L +++P + ++ L+Q Sbjct: 72 VIYKKMGEVNATSLELNSLSR--FFKNYMSDAILDMLVILLPIMAAAVLVAFVGDLVQVK 129 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML- 174 +KP + + GIKRI+S+ LV +KS + I+ + ++T + + +L Sbjct: 130 WKPTAEPMKPKADKFNPVNGIKRIFSVKTLVQLLKS-IAIVAICMLVTYNKLKKEIGLLY 188 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +F + + + + + V I I + + + D + Y ++ + +KMSKQE+KDE K Sbjct: 189 NFYNISLEAAIIRMGDVLLDVGITISVIYLIVGIADFIFEYVKFKNDMKMSKQELKDEWK 248 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + GNP +KN+QK R +MM+A A ++ITNPTH+A+AL+Y Q APV+VAK Sbjct: 249 DTEGNPEVKNQQKRRMNEASRRRMMQAVPEADVVITNPTHFAVALKYEQNSGKAPVVVAK 308 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYH 351 G++ +A+K+++ A ++ + I E LAR L+ V + S IP Y+AVA++ ++K+ H Sbjct: 309 GEDYLAQKIKETARKNQVEIVENKPLARMLYYNVDLGSEIPQELYQAVAEVLAFVWKVKH 368 Query: 352 K 352 K Sbjct: 369 K 369 >gi|325527806|gb|EGD05073.1| flagellar biosynthesis protein FlhB [Burkholderia sp. TJI49] Length = 308 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 130/227 (57%) Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F R++ G+ RI+SI + S K ++VG I I++ + +L + + L Sbjct: 37 FDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLDAALV 96 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K R Sbjct: 97 DALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRI 156 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++R++ Sbjct: 157 RQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARIREL 216 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 217 AAEHNVPLLEAPPLARALYHNVELEREIPGSLYAAVAEVLAWVYQLK 263 >gi|229827381|ref|ZP_04453450.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC 49176] gi|229788319|gb|EEP24433.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC 49176] Length = 387 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/357 (27%), Positives = 182/357 (50%), Gaps = 22/357 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----FFSPGI-------Y 56 +KTE + KK+EDA EG ++R + L + ++ L++ + F + G Y Sbjct: 34 DKTEKATPKKLEDARKEGR--VARSSDLINGLMLLLMFFVLRIFGNFMAKGFLESFVKYY 91 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + T+D+ + ++ D+ V L + +P L+ + ++Q Sbjct: 92 NKTADISM--------EIFDVKQAVNLGNEIVFDIVIACLPVLIGSFLVAFAGNVVQIGW 143 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + +KP R++ G+KR++S +V +KS +K++ + + + + + +L+ Sbjct: 144 KVTTKPLKPKLDRLNPIGGLKRMFSQEKVVELIKSILKVLAIAIVAYNEVKDRWLFILNL 203 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + F V V + I + + + D G+ + L+MSKQE+KDE+KQS Sbjct: 204 YDFEFMQAIVNIFDIVLDVGVKISVLFVIIGIADFGYQKWKHLHDLRMSKQEVKDEMKQS 263 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + R R +MM+ +A ++ITNPTH+A+A++Y + + +AP ++AKG Sbjct: 264 EGDPQVKGRIRQKMREGARRRMMQELPKADVVITNPTHFAVAIKYDKEKAEAPYVLAKGA 323 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A +++ A EH I I E LAR L+ V I IPP Y+ VA+++ +Y K Sbjct: 324 DYVAATIKEAAKEHKIEIVENKPLARMLYYNVEIGEQIPPELYQMVAEVLAYVYSVK 380 >gi|218133682|ref|ZP_03462486.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC 43243] gi|217991057|gb|EEC57063.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC 43243] Length = 386 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/362 (27%), Positives = 188/362 (51%), Gaps = 20/362 (5%) Query: 5 DAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTS 60 D P KTE P++KK+ DA EG S+E +LA + + F+ + S Sbjct: 22 DGPGGEKTEVPTAKKLNDARKEGQVAKSKEIITALMLLALFVVIKFYIGNLGQQMIECFS 81 Query: 61 DLHVLLA-----SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + + L S ++ D + +V L L+ +++P + L ++ I +Q+ Sbjct: 82 EFYDLFGKIISNSEYGMRMVDATGVVSLGLTTVLN---MIVPFIALAVVIAILGNALQQK 138 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 ++ ++P ++S G+KR++++ L KS I ++ +I ++ + + Sbjct: 139 WMVTTKPLQPKLSKISPISGLKRMFNVKQLFEVGKSVAMIAVMSYVIYTTVKDKLGVLYT 198 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKD 231 F + + LY A V +++ + + I+ + +D+ + H++ +KM+KQE+KD Sbjct: 199 FYNIS----LYEALEIVGDIIVDLGIKISAVFLVIGFVDLIYQRHKFKEDMKMTKQEVKD 254 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G+P +K + + + R +MMEA +A ++ITNPTH+A+AL+Y + APV+ Sbjct: 255 EFKNTEGDPQVKGQIRRRMQQVSRRRMMEALPQADVVITNPTHFAVALKYEANKGQAPVV 314 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + +A ++ A E+ I I E LAR L+ V I + IPP Y+AVA+++ +Y Sbjct: 315 IAKGADYLAFDIKAKAKEYGIEIVENKPLARILYNNVEIGAQIPPELYQAVAEVLAFVYS 374 Query: 352 KK 353 K Sbjct: 375 LK 376 >gi|311992333|gb|ADQ26740.1| protein export component [Aeromonas hydrophila] Length = 375 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 16/357 (4%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D +TE P+ K+++ A +G S+E S +LA + LL S+ + Sbjct: 2 DTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKE----SLAGAMVK 57 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN--- 121 +L E ++T L L+ P LLFM+ I +++ + + +N Sbjct: 58 VLTMGFTLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNTL-MGGMNFSS 116 Query: 122 -HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179 + P + ++S GIKR++ + +LV +KS K++ + L+ + +L+ + Sbjct: 117 EAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEG 176 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSY 237 P I+ + ++I+L A + ++ I + QW +LKM+KQE+KDE K S Sbjct: 177 YPGGIIDALDLLL---WMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSE 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQ 296 G P +K R + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG Sbjct: 234 GKPEVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGT 293 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA K+R+IA E+ IP+ P+L R+++ I IP + AVAQ++ +Y K Sbjct: 294 DEIAMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 350 >gi|237751917|ref|ZP_04582397.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC BAA-430] gi|229376676|gb|EEO26767.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC BAA-430] Length = 354 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 104/351 (29%), Positives = 186/351 (52%), Gaps = 14/351 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILA--CLIYLLF-FFSPGIYSVTS 60 +DA KTE P+++KIE A EGN S + + F ++ L++L F F+ G+ SV Sbjct: 3 DDA--EKTEEPTARKIEKAREEGNVLKSPDVNAFLGLVVGLALVFLCFNFWVRGLGSVFE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + R ++ + + L L+ P M+ G+ + + Q +L Sbjct: 61 QIYQSFSQEFTR-----ANAMSITLSLVFQVLYLLAPIFGALMLIGVIANVSQSGFLLTA 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P ++++ G+K + S+ L++ F+ +F +L II + + L ++ Sbjct: 116 KAIQPKLQKLNFITGMKNLISLKKLLDGFLITFK--VLSAFIIAFFVFLGFMHELTTVAL 173 Query: 180 NPHSILYHAFFTVRKVLIMILL-FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P F +LI ILL F + +D +Q++ L+MSKQE+KDE K G Sbjct: 174 FPLGDQMLWFRDKAIILIGILLAFFLVMASVDYMIKRYQYFKSLRMSKQEVKDEFKNQEG 233 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 + +K + +S+ R +MM+ A +++TNPTHYA+ALRY + AP ++AKG + Sbjct: 234 DQQVKGKIRSLMFQAARKRMMQNIPSADVVVTNPTHYAVALRYDSKKERAPRVLAKGVDF 293 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +A+++++IA EH IPI E P LAR+L+K V ++ IP Y+A+ ++ ++ Sbjct: 294 LAQRIKEIATEHEIPIIENPPLARALYKDVDLDMEIPESLYQAMVNVLLEV 344 >gi|226313051|ref|YP_002772945.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC 100599] gi|226095999|dbj|BAH44441.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC 100599] Length = 365 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 182/345 (52%), Gaps = 7/345 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +DA +G S++ S S+ A L+ S + + + L + Sbjct: 18 EKTEKATPKKKQDARKKGQVAKSQDLSPALSLTAFFFLLMMLGSTMLGTFQDLMRESLIT 77 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 T +L + ++ ++ L A ++V P L L + +Q + ++ + Sbjct: 78 YTTWQLNE-ENLKVMVMQLVFEAIKIVGPILGLSFLVAFAVNYMQVGWHFSTEPLQMKLE 136 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKI---ILVGTIITISLTENYFTMLDFISANPHSIL 185 ++ +G KRI+S+ +LV +KS +KI I V +I + E L +S ++L Sbjct: 137 KIDPIKGAKRIFSLRSLVELLKSLLKISAGIYVAYVILWNAKEQ-VVQLSLLSLG--AVL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 V K+ I + L + L VLD + ++ L+MSKQ++KDE KQ+ G+P+IK + Sbjct: 194 SFTAEEVTKLGIYLGLLLFILAVLDYAYQRYEHEKNLRMSKQDLKDEHKQAEGDPLIKGK 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + RS +MM+ +A +IITNPTH+A+A+RY + AP ++AKGQ+ +A K+R+ Sbjct: 254 IRERQRSMAIRRMMQELPKADVIITNPTHFAVAVRYDASAMSAPTVIAKGQDYLALKIRE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A +H I E LAR+L+ QV + IP +KAVA+++ +Y Sbjct: 314 VAKKHRIVTMENKPLARALYSQVEVGQQIPEEMFKAVAEVLAYVY 358 >gi|300697969|ref|YP_003748630.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957] gi|299074693|emb|CBJ54250.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957] Length = 387 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 181/358 (50%), Gaps = 32/358 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S++++E A EG+ P SRE + ++L S G V + V AS Sbjct: 8 EKTEPASARRLEQAREEGDVPQSRE---------LVSFVLLAVSAGGLWVMGESIVRAAS 58 Query: 69 A-TQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVLNLN 121 A R LE D + ++ L V+ GL+L ++ + L ++L Sbjct: 59 AFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAISLK 118 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML----DFI 177 + P R+ G+KR++S+ L+ + K+ LVG + ++ +L DF+ Sbjct: 119 PLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLALVGGV-------GWWLILHYRDDFV 171 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEI 233 P L V + L +A + +L D+ + Q+ K +M+K+E++ E Sbjct: 172 EL-PRQDLAAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++A Sbjct: 231 RESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG +++A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y Sbjct: 291 KGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQ 348 >gi|302387776|ref|YP_003823598.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum WM1] gi|302198404|gb|ADL05975.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum WM1] Length = 353 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 190/349 (54%), Gaps = 7/349 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL--- 62 A D+KTE + KK D +G+ +S++ + +S+L + L F P +Y + Sbjct: 2 AGDSKTEKATPKKRRDERKKGHVAVSKDVVMVASLLGIFMMLKLLF-PFMYKTLRNYMIK 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 ++ LA A + L D + ++ T +++ + P LL ++ + + +Q + ++ Sbjct: 61 YISLAPAAE-TLSDYTTKAYMDTVIAVL--KACFPILLAAVLLAVIATGVQTRFLFTKSN 117 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P F R++ +GIK I S+ +LV +KS +KII++ I+ + + + I Sbjct: 118 LAPKFDRLNPLQGIKNILSVKSLVELIKSLIKIIILILILYQIIKGDLRAVARTIDMELQ 177 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + +++I + + + D + + + +++MSKQE+K+E KQ+ GNP I Sbjct: 178 DSAVYVLNAILEMIIKVSIVFLAIAGFDFFYQWWDFERQIRMSKQELKEEYKQTEGNPEI 237 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R ++I R R R +MM+A A +I+ NPTHYA+ALRY +++APVLVAKGQ+ +A + Sbjct: 238 KGRIRNIQRERARSRMMQAVPTADVIVRNPTHYAVALRYNIEKDNAPVLVAKGQDELALR 297 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + + E+ + + E LAR ++ + + IPP +Y VA+++ +Y Sbjct: 298 IVAVGEENGVYVLENKPLARGIYAGTQVGAEIPPEYYGMVAEILVYVYR 346 >gi|207725003|ref|YP_002255400.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2] gi|206590230|emb|CAQ37191.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2] Length = 387 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 181/358 (50%), Gaps = 32/358 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S++++E A EG+ P SRE + ++L S G V + V AS Sbjct: 8 EKTEPASARRLEQAREEGDVPQSRE---------LVSFVLLTVSAGGLWVMGESIVRAAS 58 Query: 69 A-TQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVLNLN 121 A R LE D + ++ L V+ GL+L ++ + L ++ Sbjct: 59 AFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAISFK 118 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML----DFI 177 + P R+ G+KR++S+ L+ + K++LVG + ++ +L DF+ Sbjct: 119 PLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGV-------GWWLILHYRDDFV 171 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEI 233 P L V + L +A + +L D+ + Q+ K +M+K+E++ E Sbjct: 172 EL-PRQDLVAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++A Sbjct: 231 RESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG +++A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y Sbjct: 291 KGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQ 348 >gi|238755333|ref|ZP_04616676.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473] gi|238706469|gb|EEP98843.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473] gi|253317686|gb|ACT22775.1| flagellar biosynthesis protein FlhB [Yersinia ruckeri] Length = 383 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE P++ K+E A +G P SRE + + A L L F S+ L Sbjct: 3 EDSDLEKTEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLSILWVFGE----SIGRQLA 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++A Q I + +L + + + ++P + ++ I ++ + Sbjct: 59 AMIAQGLQFNHGVIGNEKQMLRQVGMLLMQTVKALLPVFIGLVLVAISVPMLLGGIAFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 K KR++ G+KR++S L +K+ +K LVG + + L + ML I+A Sbjct: 119 ESFKFDLKRMNPISGLKRMFSSQVLAELLKAILKATLVGWVTGMFLWHYWPDMLRLIAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + +++L + + D+ + KL+M+KQEI+DE K G+P Sbjct: 179 PIAALGDALHLILFCGFIVVLGLTPMVGFDVFYQIMSHIKKLRMTKQEIRDEFKDQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPQADVIVTNPTHYAVALQYNENKMSAPKVLAKGAGEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLK 351 >gi|325917832|ref|ZP_08180011.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC 35937] gi|325535943|gb|EGD07760.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC 35937] Length = 376 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 182/354 (51%), Gaps = 7/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+D +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESDDGGERTELPTEKRLREAREQGNFPQSRELST-AAVFGAGVFGLMALAGGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V + +A H + L H L +++P + + ++ G+ L+ Sbjct: 60 ---VWMKTALSPDPRMREHPMALFGHFGDLLLQLLWVMLPLIGVCLLAGLAGPLMMSGLH 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P +++ GIKR++ N+L +KS ++++ VG + ++++ + + Sbjct: 117 FSSKAIMPDLTKLNPMNGIKRMWGSNSLAELVKSVLRLLFVGLAAWLCISKSLPGLRALV 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + + + +L + L +D + W KLKM+++EIK E+K+S Sbjct: 177 NQPLEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + Sbjct: 237 GSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVD 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 297 EMAFRIRETCEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|51246526|ref|YP_066410.1| flagellar biosynthesis protein FlhB [Desulfotalea psychrophila LSv54] gi|50877563|emb|CAG37403.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea psychrophila LSv54] Length = 355 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 112/361 (31%), Positives = 187/361 (51%), Gaps = 22/361 (6%) Query: 4 NDAP--DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +AP +TE SSK+ ED +G S+E + L++ F+ GI+ Sbjct: 3 EEAPTGGERTEDASSKRREDFRKKGQVAQSKEVQTAALFTLLLLFWSFYI--GIFG--RK 58 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSL----SASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L +L+ S Q LE S L+L + ++ P LL ++ GI S Q + Sbjct: 59 LLILIQSIWQ-SLESFSPTPSQTMQLALFVIKECAIILAPLFLLVVIVGIASSFFQIGWL 117 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + P F +++ G R +S + + +KS K+ L+G + ++ E++ L Sbjct: 118 FTTKPLSPDFSKMNPIAGFGRFFSKKSFIEVIKSLSKVTLIGWLAFSTIIEHFNEALVQT 177 Query: 178 SANPHSILYHAFFTVRKVLIM-----ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +P + L F V LI+ IL+ +A + L + W + K+KM+KQE K+E Sbjct: 178 DTSPMATL--VFIGVTASLIVAKVCAILILLAFIDFLYVKWEMEE---KMKMTKQEQKEE 232 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K+S G+P IK++ ++I + R +MM A +IITNPTH ++ALRY ++ AP++V Sbjct: 233 FKESEGDPHIKSQIRAIQQEMARKRMMADVPGADVIITNPTHISIALRYRAGQDQAPIIV 292 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA E++IPI E P +AR L K + I ++P + VA+++ +Y Sbjct: 293 AKGVDFVAMKIREIARENSIPIIENPPVARMLHK-IEIGGSVPEEMFAVVAEILAHVYSL 351 Query: 353 K 353 K Sbjct: 352 K 352 >gi|311030112|ref|ZP_07708202.1| flagellar biosynthesis protein FlhB [Bacillus sp. m3-13] Length = 362 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 194/350 (55%), Gaps = 17/350 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +D +G +++ A + +S + ++L F + G + L + S Sbjct: 15 EKTEKATPKKKQDTRKKGQ--VAKSADVNTSFVLIAVFLCLF-AIGPWMKDETLKLFEHS 71 Query: 69 ATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LE+++ H++FL L + ++ P +L ++ + + +Q P+ + + Sbjct: 72 FRVYLLEEVTVQKVHMIFL--ELIMQLIWIIGPIMLAALLGAVIANYLQVGPLFSTEAIH 129 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 ++ +G KRIYS+ +V +KS +KI+ VG IIT S+ + L+ + Sbjct: 130 MKLNKLDPIQGFKRIYSVRAIVELVKSMLKIVFVG-IITFSIL---WMSLEEVLILSQKN 185 Query: 185 LYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L+ AF + + + + LF L++ D + + + ++MSK ++KDE K++ G+P Sbjct: 186 LHEAFAFLGTLTVRMGLFAGGALLFLSIFDYLYQKYDYEKNIRMSKHDVKDEYKKAEGDP 245 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK++ K R +MM+ +A +IITNPTH+A+AL+Y +++ DAP+++AKG + +A Sbjct: 246 LIKSKIKQKQREMAMQRMMQDVPQADVIITNPTHFAIALKYDESKGDAPIVLAKGVDYVA 305 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 KK+++ A EHNI E LARSL+ Q I AIP F++AVA+++ +Y Sbjct: 306 KKIKEKAKEHNIVTVENKPLARSLYSQAEIGDAIPEEFFQAVAEILAYVY 355 >gi|260768792|ref|ZP_05877726.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|260616822|gb|EEX42007.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] Length = 372 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 186/350 (53%), Gaps = 13/350 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D KTE SS+K++ A +G S+E FSS + ++ + +F++ S++ Sbjct: 1 MSSGD----KTEQASSQKLDKARKQGQIARSKE---FSSAIMLMVCIGYFYANA-DSLSG 52 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIP 116 L L + T D HI+ L+T ++ P ++ F+ I + L+ Sbjct: 53 HLMQLFEVSFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFH 112 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 NL+ + P F +++ GIKRI+S LV F+K+ KI L+ ++ ++ N+ + Sbjct: 113 -FNLSLLAPKFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSL 171 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + A+ + ++ + V ++L M++L V+DI + + +++KM+KQE+K E K+ Sbjct: 172 VRASFQTTIHFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQ 231 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P IK+R + I R + A +++ NPTH+A+AL+Y T+ +AP +VAKG+ Sbjct: 232 EGRPEIKSRIRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGK 291 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 N +A +R +A +H + + P + RS++ +N IP + AVAQ++ Sbjct: 292 NEVAFYIRTLAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQIL 341 >gi|332981452|ref|YP_004462893.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1 BON] gi|332699130|gb|AEE96071.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1 BON] Length = 361 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 98/354 (27%), Positives = 181/354 (51%), Gaps = 15/354 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS---DL 62 A D KTE P+ K+ +A +G S E ++ + +LA + + F + +T+ + Sbjct: 11 ADDEKTEQPTPKRRREAREKGQVFKSAEINMVAVLLASFLVIKAIFPSLLQILTAYERQI 70 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG----SYLIQRIPV- 117 + + SA + +F+ T + + + + + + ++ P+ Sbjct: 71 YTMAGSADSIYTSENLSTLFINTIIQIGKGLWIFIFGICIIGIAVNIAQVGFVFSAKPLA 130 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++L H+ P+ G KRI+S + +KS +KI ++G + + + L Sbjct: 131 MDLGHLNPA-------AGFKRIFSKRAVNELVKSILKIAIIGYVAYTEIRNDINIFLAMS 183 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 ++Y V I + +AT+ VLD + ++ L+MSKQE+K E K++ Sbjct: 184 REGTSVMIYDMVSIVLNAAIKLTAVMATVAVLDYIFQRREYERNLRMSKQEVKQEFKETE 243 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK R + I R +MM+ +A ++ITNPTH+A+ALRY + APV++AKG + Sbjct: 244 GDPQIKARIRQIQRQLAMMRMMQQVPKADVVITNPTHFAVALRYDAETDQAPVILAKGVD 303 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A++++++A + +PI E LAR+L+ V I IPP FY+AVA+++ +Y+ Sbjct: 304 YMAQRIKEVARQSRVPIVENRELARNLYYAVDIGQIIPPQFYEAVAEVLAYVYN 357 >gi|323705428|ref|ZP_08117003.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium xylanolyticum LX-11] gi|323535330|gb|EGB25106.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium xylanolyticum LX-11] Length = 357 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 2/344 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67 KTE + K+ +DA +G SRE + +A + + F I + + + L Sbjct: 9 EKTEPATPKRRQDARKKGQVFQSREVTSALVTIAGFLVIYFTVQNSIAEIMNLIKFLFLN 68 Query: 68 -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + I+ I L + +L++P + + + S Q V L + Sbjct: 69 YGGASDNVFTINGIYKLFEMVFSVFIKLILPTIATVFIIALISTYAQVGFVFTLETLNFK 128 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +R++ +G+KR++S +L+ +KS +KI ++ ++ L Y + + + ++ Sbjct: 129 LERLNPLDGLKRMFSKRSLLELVKSIIKISILAYVMYSFLIGQYKGIPQLLDMSVQDLIK 188 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +L+ I L + L +D + + ++ S L+MSK++IK+E K++ GNP IK+ Sbjct: 189 YNMNIFAGILLRISLVLVVLGAIDYVYQWREYESNLRMSKEDIKEEFKETEGNPQIKSEI 248 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A ++ITNPTH A+AL Y NDAPV+VAKGQ+ IA+K+++ Sbjct: 249 RKKQRQISMRRMMQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQKIKEE 308 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A +++I I E LA+SL+K I +IPP YKAVA+++ +Y Sbjct: 309 AIKYSIAIVENKPLAQSLYKTTEIGDSIPPELYKAVAEVLAYVY 352 >gi|294635599|ref|ZP_06714076.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685] gi|291091051|gb|EFE23612.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685] Length = 401 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 114/369 (30%), Positives = 177/369 (47%), Gaps = 49/369 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ +IE A +G P SRE +S+L + L G Y + S L V++A Sbjct: 21 EKTEDPTPHRIEKAREKGQIPRSRE---LTSMLMLAVGLAILLLGGDY-LASSLAVMIAQ 76 Query: 69 ATQRKLEDISHIVFLLTHLSLSASR--LVIPGLLLFMMFG-------------------I 107 HL LS R L+ G+LL I Sbjct: 77 GLH------------FDHLLLSNDRQMLIQLGMLLRQAVAALLPVLLGLMLVGWCAPMLI 124 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 G +L N +K R++ G KR++S L +K +K LVG + L Sbjct: 125 GGFL------FNPGSIKCELNRLNPLTGFKRMFSSQVLAELLKGVLKATLVGCVTGWFLW 178 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKM 224 + ML I+ + + A V ++++L + + D+ ++Q +S KL+M Sbjct: 179 HYWPRMLRLITESSLEAMGDALHLVGMCGLLVVLGLLPMVGFDV---FYQLWSNLNKLRM 235 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +KQEIKDE K+ G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + Sbjct: 236 TKQEIKDEFKEQEGDPHVKGRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQEN 295 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 + AP ++AKG IA++++ + EH IP E P LAR+L++ I AIP Y AVA+ Sbjct: 296 KMSAPKVLAKGAGNIAQRIKALGMEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAE 355 Query: 345 LIYKIYHKK 353 ++ +Y K Sbjct: 356 VLAWVYQLK 364 >gi|261344152|ref|ZP_05971796.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM 4541] gi|282567746|gb|EFB73281.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM 4541] Length = 383 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 180/360 (50%), Gaps = 35/360 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF----------------FFS 52 KTE P+ K + A ++G S+E S +LA + L F Sbjct: 8 EKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLAAQLRQIMRQGFIF 67 Query: 53 PGIYSVTSDLHV-LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 G Y + L + L S L + ++ L + +SAS LV G LLF S L Sbjct: 68 DGHYLQNTKLMLNYLGSVVSEALFALLPVIGGLALVGISASSLV--GGLLF-----NSKL 120 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 I+ P K++ +G+KRI+S+N L K+ +K + VG I L +++ Sbjct: 121 IKFDP-----------KKLDPIKGLKRIFSMNALSELFKAILKSLFVGLGTWIFLWQSWP 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 ++L + P + L +A V +I+ + + D+ + + KL+MS+QEIKD Sbjct: 170 SLLHLVMEPPVTALGNALEKVIFAGYLIVFMLIPMVAFDVFYQFRSHLKKLRMSRQEIKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E KQ G+P IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP + Sbjct: 230 EFKQQEGDPHIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG +IA+++++I E+ I E P LAR+L++ I +IP Y AVA+++ +Y Sbjct: 290 LAKGAGVIAQRIKEIGEENRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQ 349 >gi|162210026|ref|YP_331480.2| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 1710b] Length = 405 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|76581465|gb|ABA50940.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1710b] Length = 470 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 72 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 131 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 132 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 190 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 191 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 250 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P +K Sbjct: 251 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 310 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 311 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 370 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 371 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 420 >gi|254258153|ref|ZP_04949207.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1710a] gi|254216842|gb|EET06226.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1710a] Length = 401 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D + ++ LSL + P L L + + + + +++ Sbjct: 60 MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|315452646|ref|YP_004072916.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179] gi|315131698|emb|CBY82326.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179] Length = 352 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 112/352 (31%), Positives = 185/352 (52%), Gaps = 15/352 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE PS+KKIE A EGN S E F ++A ++ FFS + S + Sbjct: 2 AEEEKTELPSAKKIEKAREEGNVAKSLEVVGFLGLVAGFGGVMAFFSMWLDHFES---IF 58 Query: 66 LASATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 S L+ H + L L + +++P L L + + ++Q + + + Sbjct: 59 RQSLRWIALDFTPHNLHLLSLQLLKDVAWVLLPFLFLMFVVAFLANVVQFGLLFSPKAIV 118 Query: 125 PSFKRVSLREGIKRIYSINNLVN--FMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 P F +++ G+K ++S+ L++ + + V I V + +SL + + Sbjct: 119 PKFSKINPINGLKNLFSLKKLLDGLLITAKVCIAFVLGFVVVSLFIGELAKIARVEIRDQ 178 Query: 183 SILYHAFFTVRKVLIMI--LLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 ++ + K LI+I LLF+ + ++LD Q+ + LKM+KQE+KDE KQ GN Sbjct: 179 ALWFE-----HKALILIASLLFLFLVASLLDFLLKRRQYINSLKMTKQEVKDEYKQQEGN 233 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK + K + KMM A A +++TNPTHYA+ALR+ + ++ APV+VAKG + Sbjct: 234 PEIKAKIKQLMLKNSMSKMMAAIPSANVVVTNPTHYAVALRF-EEKDVAPVVVAKGIEHL 292 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A +++ IA EH I I E P LAR L+K+V ++ IP + ++AVA + ++ H Sbjct: 293 AIRIKAIAREHEIEIIENPKLARELYKEVDVDEVIPKMLFEAVAIVFAQVAH 344 >gi|149377872|ref|ZP_01895601.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter algicola DG893] gi|149357814|gb|EDM46307.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter algicola DG893] Length = 378 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 101/366 (27%), Positives = 175/366 (47%), Gaps = 33/366 (9%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSV 58 END KTE + +++E A +G S+E + + +LA LL F + S+ Sbjct: 3 EENDNSQEKTEEATPRRLEKAREDGQTARSKELATMAVLLAGAGGLLMFGASMGASLESI 62 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSL----SASRLVIPGLLLFMM---------F 105 D VL SA +F H+S+ SA + L ++ Sbjct: 63 MRDSFVLERSA-----------IFDTRHMSVQLMASAKEAALSLAPLLILLLVAAVAGSI 111 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 GIG L+ + + P R+ +G+KR++S+ +L+ +K+ +K+ LV + + Sbjct: 112 GIGGLLV------SGKAIAPKLNRMDPLKGLKRMFSMRSLIELVKAILKVGLVMAVAILI 165 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 L +L S + H +T+ ++ + +D+ + KL+M+ Sbjct: 166 LNLRTDDLLSIAEEPARSAMEHVVWTMAWSFFILACATIVIAAIDVPFQIFDHQKKLRMT 225 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+KDE K + G P +K + + + R + +MM+ A ++ITNPTHYA+AL+Y Q Sbjct: 226 KQEVKDEYKDTEGKPEVKGKIRQLQREMAQRRMMQDVPGADVVITNPTHYAVALKYDQKN 285 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP++VAKG + A K+ +IA E+ + I P LAR+++ I IP Y A+AQ+ Sbjct: 286 MAAPIVVAKGSDETAFKIMEIARENKVEILRTPPLARAVYHNTDIGGEIPDGLYMAIAQV 345 Query: 346 IYKIYH 351 + ++ Sbjct: 346 LAYVFQ 351 >gi|167740656|ref|ZP_02413430.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 14] gi|167826242|ref|ZP_02457713.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 9] gi|167896340|ref|ZP_02483742.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 7894] gi|167904714|ref|ZP_02491919.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC 13177] gi|167912992|ref|ZP_02500083.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 112] gi|42766716|gb|AAS45441.1| FlhB [Burkholderia pseudomallei] Length = 405 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|222100640|ref|YP_002535208.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM 4359] gi|221573030|gb|ACM23842.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM 4359] Length = 315 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 173/307 (56%), Gaps = 14/307 (4%) Query: 51 FSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF-GIG 108 F P GI S+ D+ L+ LE+ ++ L + L+I L+LF M GI Sbjct: 15 FGPQGIASIARDVSAFLS------LEETEDLLSALGYFK--DILLMIGALMLFTMAAGIL 66 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 IQ +L ++P R++ EG KR++S+ ++V +K+ +K++++G ++ L + Sbjct: 67 VGAIQTRFLLAFKTLRPDLNRINPVEGFKRLFSLRSVVELLKAVMKVVVIGVVVYQVLKD 126 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW-YSK-LKMSK 226 ++ M+ + + +V + + + L V D ++Y +W Y K ++M+K Sbjct: 127 RWYEMVLLSDMELEDAFLNLWDVASEVSLKSGIALLALAVFD--YAYQRWDYEKSIRMTK 184 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE K+ GNP +K RQ+ + +R +MME +A ++ITNPTH+A+AL+Y Sbjct: 185 QEVKDEFKEVEGNPEVKRRQRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTM 244 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP +VAKG + +A K+ +IA E+ + I PSLAR+L+ +V I IP FY+ VA+++ Sbjct: 245 NAPTVVAKGVDHLALKIIEIARENGVAIVRNPSLARTLYYRVEIGEEIPVEFYRIVAEVL 304 Query: 347 YKIYHKK 353 +Y +K Sbjct: 305 VYVYTRK 311 >gi|294500921|ref|YP_003564621.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551] gi|294350858|gb|ADE71187.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551] Length = 360 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 105/349 (30%), Positives = 185/349 (53%), Gaps = 13/349 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +D+ +G S++ + ++++ +++L F F G + LL Sbjct: 14 EKTEKATPKKKQDSRKKGQVAKSQDVT--TALILLMVFLYFLF--GAKQFLQQMMKLLRE 69 Query: 69 ATQR-KLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 A Q LE+++ + + HL S + P +L + +G+ +Q + + ++P Sbjct: 70 AFQTYMLEEVTAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQP 129 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 ++++ G KRI+++ LV +KS +KI+ +G + L + + D ++ + SI Sbjct: 130 KLEKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFIL---WIHIEDVLNLSQKSIG 186 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSYGNPII 242 + V M L L L + +Q + ++MSKQ+IKDE K G+P+I Sbjct: 187 DSLVVLSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLI 246 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K Sbjct: 247 KSKIKQKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQK 306 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++ IA H I + E LAR+LF Q + A+P F+KAVA+++ +Y Sbjct: 307 IKGIAKSHEIIMVENRRLARALFDQTKVGDAVPEEFFKAVAEILAYVYR 355 >gi|121533743|ref|ZP_01665570.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans Nor1] gi|121307734|gb|EAX48649.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans Nor1] Length = 376 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 110/364 (30%), Positives = 193/364 (53%), Gaps = 38/364 (10%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIY---SVTSDLH 63 KTE + K+ E+A +G +++ L S++ CL+ F G Y + S + Sbjct: 29 QEKTEEATPKRREEARKKGQ--VAKSVELGSAL--CLLAAFFTIKLTGTYIYEQLASYMQ 84 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + T+ + S F L L+L ++V+P +L+ + + +Q ++ + Sbjct: 85 FLFSRFTKEDMTIASSYRFFL-DLALIFLKIVLPIMLVILAVSLLVNFMQVGFTFSVEPL 143 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP R++ G++R++S +LV +KS K+ ++ +YF + FI + Sbjct: 144 KPQLSRINPLAGMQRLFSKRSLVELVKSLFKVAII----------SYF-IYQFIIEETLN 192 Query: 184 ILYHAFFTVRKVLIMI--LLF---------IATLTVLDIGWSYHQWYS---KLKMSKQEI 229 I + +R L +I L F I L +LD Y+QW+ LKM+KQE+ Sbjct: 193 IALLSRLALRDSLAVIAALTFDLAFRIGVVILVLAILDY---YYQWWEHNQNLKMTKQEV 249 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E KQ+ GNP IK++ K R+ +MM+ +A +++TNPTH+A+AL Y +T AP Sbjct: 250 KEEFKQTEGNPQIKSKIKERQRALAMRRMMQEVPKADVVVTNPTHFAIALLYEKTMT-AP 308 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +++AKGQ+ +A++++ +A E+ + I E +LAR+L+ V I +PP YKAVA+++ + Sbjct: 309 MVIAKGQDFMAERIKLVAKENGVAIVENKALARALYDTVEIGETVPPELYKAVAEVLAYV 368 Query: 350 YHKK 353 Y K Sbjct: 369 YRLK 372 >gi|167721674|ref|ZP_02404910.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei DM98] Length = 405 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|46581635|ref|YP_012443.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str. Hildenborough] gi|120601206|ref|YP_965606.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris DP4] gi|46451058|gb|AAS97703.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str. Hildenborough] gi|120561435|gb|ABM27179.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris DP4] gi|311235277|gb|ADP88131.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris RCH1] Length = 357 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 183/350 (52%), Gaps = 10/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D ++TE + K++ A N+GN S+E S + A L+ + F G+ + Sbjct: 1 MAQKDP--SRTEQATRKRLNKARNKGNVAKSQEVSKAVTTFAGLVAITFML--GV--LNE 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + R + + + + L SA L I L + + G+ +++ R+ V L Sbjct: 55 HMQEVFRFFLSRPHDFTPNEQTVYSLLLWSAGELAIMLLPIMLFIGLAAFIAMRLQVGKL 114 Query: 121 ---NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 K + R ++ +KR++ S L+ KS ++ + +G I L + +L Sbjct: 115 WTTEVFKLDWSRFNVINALKRMFISPQTLIRLGKSLLQAVFIGIAPIIVLKQEMLNLLPL 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 A+ I + T +++ L+ + + +D+ ++ + LKM+K E+KDE KQ+ Sbjct: 175 YFADMSGIAVYMLETGARMVKYALVPMVIIAAVDLWYTRWDYNENLKMTKDEVKDERKQA 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P++K++Q+ + +M++ A ++ITNPTH A+ALRY T AP++VA G Sbjct: 235 EGDPVVKSQQRQKMMKVMAQRMLKEVPTADVVITNPTHIAVALRYDVTAAPAPIVVAMGA 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +AK++R++A EHN+PI E LAR+L+K V + IP YKAVA ++ Sbjct: 295 DHLAKRIREVAREHNVPIRENKPLARALYKSVEVGDMIPAELYKAVAAIL 344 >gi|53720905|ref|YP_109891.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei K96243] gi|53724312|ref|YP_104358.1| flagellar biosynthesis protein FlhB [Burkholderia mallei ATCC 23344] gi|167817864|ref|ZP_02449544.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 91] gi|167847750|ref|ZP_02473258.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei B7210] gi|52211319|emb|CAH37308.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei K96243] gi|52427735|gb|AAU48328.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC 23344] Length = 405 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|91223558|ref|ZP_01258823.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01] gi|269965690|ref|ZP_06179803.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B] gi|91191644|gb|EAS77908.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01] gi|269829758|gb|EEZ83994.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B] Length = 376 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 191/362 (52%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + ++S Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL----LFMMFGIGSYLIQ 113 + S L L QR E+I L + S L+ P L LF IG+ + Sbjct: 60 IMSRLFDL-----QR--EEIFDTAKLFDIALGAMSDLLFPLFLVLATLFTAAMIGAAGVG 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 I + P +++ G+KR+ + + V +KS +K++LV T + I L + Sbjct: 113 GIS-FSAQAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLV-TGVAIYLIQASQAD 170 Query: 174 LDFISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 L +S + P +I +HA + +++I + + +DI + Q +LKM+KQE+KD Sbjct: 171 LIQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K++ G P +K R + + R + +MM +A +I+TNP H+++ALRY Q + APV+ Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ Sbjct: 290 IAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|317129190|ref|YP_004095472.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM 2522] gi|315474138|gb|ADU30741.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM 2522] Length = 359 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 189/353 (53%), Gaps = 21/353 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +++ +G +S+ + + +S + ++L F+ G +SV + + S Sbjct: 13 EKTEKATPKKRKESRQKGQ--VSKSSDVNTSFILLFVFLAFWLM-GSFSVDQLIGITRYS 69 Query: 69 ATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + L +++ ++ + + S+ A+ +V P + + M+ I S +Q + +K Sbjct: 70 FQEYLLMELTEANVYSMFINFSIQAAIVVGPFMFIAMLAAIFSNYLQVGILFAPEAIKMK 129 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVG----TIITISLTENYFTMLDFISANPH 182 ++ +G KRI+S+ LV F+KS +KI+ VG T+I I++ + ML S Sbjct: 130 LSKLDPIQGAKRIFSVRALVEFLKSLLKIVCVGFAGFTVIWIAIDD--ILMLSLYSVGES 187 Query: 183 SILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L + +LIM+ L +A L +V D + + +KMSKQ++KDE K++ G Sbjct: 188 VRL------IGNLLIMMGLAVAFLLIFLSVFDYLYQKYDHEKNIKMSKQDVKDEYKKTEG 241 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK++ K R +MM +A ++ITNPTHYA+AL+Y AP++VAKG + Sbjct: 242 DPLIKSKIKEKQRQMAMSRMMAEVPKADVVITNPTHYAIALKYDDQNMAAPIIVAKGVDF 301 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA K+ IA +N+ E LAR+L+ Q I +P +KAVA+++ +Y Sbjct: 302 IALKVINIAKNNNVMTVENRPLARALYAQADIGDPVPEDLFKAVAEVLAYVYR 354 >gi|126454601|ref|YP_001068145.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 1106a] gi|134281603|ref|ZP_01768311.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305] gi|167920930|ref|ZP_02508021.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei BCC215] gi|217423909|ref|ZP_03455409.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576] gi|226193093|ref|ZP_03788703.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pakistan 9] gi|237814235|ref|YP_002898686.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei MSHR346] gi|242317683|ref|ZP_04816699.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1106b] gi|254183876|ref|ZP_04890467.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] gi|254298802|ref|ZP_04966253.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] gi|126228243|gb|ABN91783.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1106a] gi|134247270|gb|EBA47356.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305] gi|157808470|gb|EDO85640.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] gi|184214408|gb|EDU11451.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] gi|217392972|gb|EEC32994.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576] gi|225934693|gb|EEH30670.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pakistan 9] gi|237506461|gb|ACQ98779.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei MSHR346] gi|242140922|gb|EES27324.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1106b] Length = 401 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D + ++ LSL + P L L + + + + +++ Sbjct: 60 MLHAAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|90411036|ref|ZP_01219050.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] gi|90328249|gb|EAS44560.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] Length = 376 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 195/361 (54%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE +++K+E A +G S+E + + ++ + L+++ G+ + Sbjct: 1 MAESDGQE-RTEDATARKLEQAREKGQVARSKELASVAVLVMGAVSLMWY-GEGLGKALA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFMMFG---IGSYLIQRIP 116 ++ + S ++ ++ D++ + ++ S +V P GL+L ++F IG+ + + Sbjct: 59 EIMTQMFSLSREEIYDLNRLFSIMLTAIWS---VVFPLGLVLIVLFTAALIGAAGLGGVS 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI----SLTENYFT 172 + P +++ G KR++ + + V +KS +K++LV + SL + + Sbjct: 116 -FSAEAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVTGVAAYLMYSSLNDFFLL 174 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 L+ +N ++HA + + +++I + + +D+ + Q +LKM+KQE+KDE Sbjct: 175 SLEIYPSN----IFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + G P +K R + + R + +MM +A +IITNP H+++ALRY + AP+++ Sbjct: 231 YKDTEGKPEVKGRIRMLQREMAQRRMMADVPQADVIITNPEHFSVALRYDPKLDSAPIVI 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + A K+R+IA +HNI I P LAR+++ + IP + AVAQ++ I+ Sbjct: 291 AKGVDHAALKIREIANKHNIDIVPAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|121601443|ref|YP_994701.1| flagellar biosynthesis protein FlhB [Burkholderia mallei SAVP1] gi|124383615|ref|YP_001027675.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC 10229] gi|126450428|ref|YP_001082647.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC 10247] gi|238563575|ref|ZP_00438645.2| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse 4] gi|251767891|ref|ZP_02268743.2| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20] gi|254175097|ref|ZP_04881758.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC 10399] gi|254186354|ref|ZP_04892871.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pasteur 52237] gi|254194732|ref|ZP_04901163.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13] gi|254201433|ref|ZP_04907797.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH] gi|254206775|ref|ZP_04913126.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU] gi|254357202|ref|ZP_04973476.1| flagellar biosynthetic protein FlhB [Burkholderia mallei 2002721280] gi|121230253|gb|ABM52771.1| flagellar biosynthetic protein FlhB [Burkholderia mallei SAVP1] gi|124291635|gb|ABN00904.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC 10229] gi|126243298|gb|ABO06391.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC 10247] gi|147747327|gb|EDK54403.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH] gi|147752317|gb|EDK59383.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU] gi|148026266|gb|EDK84351.1| flagellar biosynthetic protein FlhB [Burkholderia mallei 2002721280] gi|157934039|gb|EDO89709.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pasteur 52237] gi|160696142|gb|EDP86112.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC 10399] gi|169651482|gb|EDS84175.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13] gi|238520421|gb|EEP83881.1| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse 4] gi|243061442|gb|EES43628.1| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20] Length = 401 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 3 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 63 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 122 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 182 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 242 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 302 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|310764894|gb|ADP09844.1| Flagellar biosynthetic protein FlhB [Erwinia sp. Ejp617] Length = 381 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 186/353 (52%), Gaps = 13/353 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI-YLLFFFSPG--IYSVTS 60 ++ + KTEAP+ +I A EG P S+E +++L L+ + L S G + S+ S Sbjct: 3 QESDNEKTEAPTPSRIAKAREEGQIPRSKE---LTTLLMLLVGWGLMLCSGGNLVRSLQS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L L D + ++ + L A ++P + ++ + + + +L+ Sbjct: 60 LLHNALIFDRLLVL-DPAQMLQRSSSLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL--VGTIITISLTENYFTMLDFIS 178 + P K+++ GIKR++S +K+ +K++L +G + + L + F L F Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATIGGGLYLLLNKEKFIRLIF-- 176 Query: 179 ANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P + L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ Sbjct: 177 -EPLGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG Sbjct: 236 GDPQIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 L+A ++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y Sbjct: 296 LVALRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVY 348 >gi|78047537|ref|YP_363712.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925983|ref|ZP_08187349.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118] gi|78035967|emb|CAJ23658.1| flagellar biosynthesis pathway component FlhB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543579|gb|EGD14996.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118] Length = 376 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 182/352 (51%), Gaps = 3/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMVLARGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + A + KL + +F L L +++P + + + G+ L+ + Sbjct: 60 -VWMKTALSPDPKLRETPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFS 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P +++ GIKR++ N+L +KS ++++ VG + +++ + ++ Sbjct: 119 GKAIMPDLSKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISKGLHGLRSLVNQ 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + + +L + L +D + W KLKM+++EIK E+K+S G+ Sbjct: 179 PLEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGS 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + + Sbjct: 239 PEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEM 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 299 AFRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|126441654|ref|YP_001060838.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668] gi|126221147|gb|ABN84653.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 668] Length = 401 Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 3 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 63 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALATPMAMGGWLVSTKTF 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 122 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 182 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 242 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 302 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|295706267|ref|YP_003599342.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319] gi|294803926|gb|ADF40992.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319] Length = 360 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 105/349 (30%), Positives = 185/349 (53%), Gaps = 13/349 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK +D+ +G S++ + ++++ +++L F F G + LL Sbjct: 14 EKTEKATPKKKQDSRKKGQVAKSQDVT--TALILLMVFLYFLF--GAKQFLQQMMKLLRE 69 Query: 69 ATQR-KLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 A Q LE+++ + + HL S + P +L + +G+ +Q + + ++P Sbjct: 70 AFQTYMLEEVTAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQP 129 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 ++++ G KRI+++ LV +KS +KI+ +G + L + + D ++ + SI Sbjct: 130 KLEKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFIL---WIHIEDVLNLSQKSIG 186 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSYGNPII 242 + V M L L L + +Q + ++MSKQ+IKDE K G+P+I Sbjct: 187 DSLVVLSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLI 246 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++ K R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K Sbjct: 247 KSKIKQKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQK 306 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++ IA H I + E LAR+LF Q + A+P F+KAVA+++ +Y Sbjct: 307 IKGIAKSHEIIMVENRPLARALFDQTKVGDAVPEEFFKAVAEILAYVYR 355 >gi|167620815|ref|ZP_02389446.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis Bt4] Length = 401 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 105/356 (29%), Positives = 185/356 (51%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TEA + K+ E A EG SRE + F+ +L+ Y + S + Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGE 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L +L +A +L+H LSL ++P L L + + + + + Sbjct: 56 HLRTMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ + F+R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 116 VSTKTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLA 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + H+ L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ Sbjct: 176 TQPLHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG N Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVN 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 296 LVAARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351 >gi|189426336|ref|YP_001953513.1| flagellar biosynthesis protein FlhB [Geobacter lovleyi SZ] gi|189422595|gb|ACD96993.1| flagellar biosynthetic protein FlhB [Geobacter lovleyi SZ] Length = 357 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/360 (27%), Positives = 190/360 (52%), Gaps = 13/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS---PGIYS 57 M+E+D +KTE P+ +++E A +G P S+ S ++LA ++ L S G+ S Sbjct: 1 MAEDDDKHSKTEQPTGRRLEKAREKGAPPSSQMLSQSFTLLAGIVVLYLLGSYLMNGLKS 60 Query: 58 VTSDLHVLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 T ++ + + T++ + + +F + + L+ P +L M GI ++++Q Sbjct: 61 TTVQVYSQIGTFELTEQNVYTMMLRIFGVLFM------LLAPVILAVMSTGILAHIVQDN 114 Query: 116 PVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 L+ + +F +++ G ++++ LV +KS +KI ++G I L + + Sbjct: 115 GRLDFQWGRITFDISKLNFISGFGKLFNKEALVEILKSLIKIFVIGWIAYQVLRDELQNI 174 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 ++ + IL + K++ + +++LD+ + ++ LKM+KQE+KDE Sbjct: 175 TVLAESDVNGILSYTGHVAFKIVTHTCGIMIVISILDMAYVKWRYIENLKMTKQEVKDET 234 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K GNP IK + K + R ++ + A ++ITNPTH+A+AL+Y ++ AP+++A Sbjct: 235 KDMEGNPEIKGKIKRLQFQAARRRLTKIIPTADVVITNPTHFAVALKYDRSRMVAPMVIA 294 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A ++++A EH + + E LAR L+ QV N IP Y AVA+++ +Y K Sbjct: 295 KGADEMALAIKEMAREHKVTLVENRFLARELYDQVAENQEIPESLYAAVAEVLAYVYRLK 354 >gi|167582700|ref|ZP_02375574.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis TXDOH] Length = 405 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TEA + K+ E A EG SRE + F+ +L+ Y + S + L Sbjct: 7 EDSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGEHLR 62 Query: 64 VLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L +A +L+H LSL ++P L L + + + + +++ Sbjct: 63 TMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 122 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 123 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 182 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 183 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 242 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 243 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 302 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 303 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355 >gi|326791523|ref|YP_004309344.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM 5427] gi|326542287|gb|ADZ84146.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM 5427] Length = 372 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 110/358 (30%), Positives = 192/358 (53%), Gaps = 18/358 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64 + +TE + KK EDA +G +++ A L +++L C + LL G Y + S + Sbjct: 18 EGRTEKATPKKKEDARKKGQ--VAKSAELNTAVLIVGFCAVSLLL----GGY-MLSGIQT 70 Query: 65 LLASATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV---LN 119 + ++ R E + + ++L + ++ L L++ I +++ I V ++ Sbjct: 71 SIITSMNRLSEVFNEVTSNYMLVVFRSAIFDILWICLPLWICLFIIGFIVSYIQVGYKVS 130 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +K F +++ GIKRI S + +V+ + S K+I++G I+ + + F Sbjct: 131 FEPMKVKFSKMNPINGIKRIISKDMIVSLILSAAKVIVLGAIVYNIILSKIPIFMRFYEL 190 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 IL TV ++ + L VLD + ++ +KM+KQEIK+E K + G+ Sbjct: 191 TIEQILNTIAMTVVQIGFFVGGAFLVLAVLDYVYQRYKHADSIKMTKQEIKEEYKNAEGD 250 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK++ K R +MM+A A +IITNPTH+A+A++Y +++ APV+VAKG + + Sbjct: 251 PQIKSKIKQKMREGSMRRMMQAIPEADVIITNPTHFAIAIKYDESKGTAPVVVAKGVDYV 310 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKKI 354 A+K+++ A EH+I I E LAR+L+ V +N IPP Y AVA++ IY + HKK+ Sbjct: 311 AQKIKEKAKEHHIEIVENKPLARALYYTVDLNKEIPPELYGAVAEVLAFIYNLQHKKM 368 >gi|296133030|ref|YP_003640277.1| flagellar biosynthetic protein FlhB [Thermincola sp. JR] gi|296031608|gb|ADG82376.1| flagellar biosynthetic protein FlhB [Thermincola potens JR] Length = 368 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/366 (30%), Positives = 186/366 (50%), Gaps = 39/366 (10%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFF---------FSPGIYS 57 KTE ++KK + A EG S E + +LA I + LFF F IY Sbjct: 19 QEKTEKATAKKRQKARQEGQVLKSMEFNSAVVLLATFISIKLFFPYMLEQLSGFFREIYR 78 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + +L + T +L + V +T V+P + ++ G+ + L+Q + Sbjct: 79 MWGSQDFVLNARTSHQLYFSTIKVSFMT---------VLPIAGIAVVSGVAANLLQSGFI 129 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +KP+ ++ GIKR++ + +LV +KS VK+ +VG I + + Sbjct: 130 FTTKPLKPNISALNPINGIKRMFGVRSLVELVKSLVKVAIVGYIAYTGYKSEFNKFPQLL 189 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY-HQWYS---KLKMSKQEIKDEI 233 N I + F R +L M L + G+ Y +QW+ LKM+KQE+K+E+ Sbjct: 190 DMN---IRASSLFIGRLILNMAFKIAVCLLIFS-GFDYWYQWWEYERSLKMTKQEVKEEL 245 Query: 234 KQSYGNPIIK------NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 KQ+ G+P +K +Q S+AR MM+A +A ++ITNPTHYA+AL+Y Sbjct: 246 KQTEGDPKVKAAIRRKQQQMSVAR------MMQAVPKADVVITNPTHYAVALKYDADTMS 299 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKGQ+ +A++++++A EH + + E LA++L+ V I +IP Y+AVA+++ Sbjct: 300 APEVVAKGQDYLAQRIKQVAKEHGVVLVENKPLAQALYNAVEIGESIPAELYQAVAEVLA 359 Query: 348 KIYHKK 353 +Y K Sbjct: 360 FVYKLK 365 >gi|161723151|ref|YP_443664.2| flagellar biosynthesis protein FlhB [Burkholderia thailandensis E264] Length = 405 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TEA + K+ E A EG SRE + F+ +L+ Y + S + L Sbjct: 7 EDSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGEHLR 62 Query: 64 VLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L +A +L+H LSL ++P L L + + + + +++ Sbjct: 63 TMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 122 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 123 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 182 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 183 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 242 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 243 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 302 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 303 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355 >gi|294664739|ref|ZP_06730068.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605493|gb|EFF48815.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 376 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 177/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMVLARGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + ++ + ++ Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] Length = 614 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 189/345 (54%), Gaps = 1/345 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 D KTE + KK D+ +G S++ L +++A ++ ++ + S+ ++ Sbjct: 261 GADEKTEEATPKKKSDSRKKGQIARSKDVGLAITMIATVLVVVALSGFIVSSLKDNVVYF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L ++ + + I + T + A+ +++P +L M+ G+ + L+Q ++ + +KP Sbjct: 321 LGDMGSMEVTE-NSIKGINTLIISKAAMVIMPVILPIMIAGVAASLVQSGFLVVKDAIKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 SF +++ G K ++S +LV +K+ + I +V I + +N+ ++ + ++ Sbjct: 380 SFGKLNPINGFKNMFSKKSLVELIKNLILIAIVIFIAYSYIRDNFDKIMQIGNLYLPTLG 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + I + + + ++D Y + ++M+KQEIK+E KQ G+P IK++ Sbjct: 440 IEVKSLIVGIFVKICILLVVIAIIDYVVQYMLFQKDIRMTKQEIKEEYKQMEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R + +MM++ AT++ITNPTH A+A++Y + + +AP +VAKG + IA K+++ Sbjct: 500 IKQRQREMSQRRMMQSVGDATVVITNPTHLAVAIKYEEGKTEAPKVVAKGADTIAIKIKE 559 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A E +PI E LAR +F+ V I+ IP Y+AVA+++ +Y Sbjct: 560 KAIESKVPIIENKPLARMIFESVEIDKEIPQDMYQAVAEVLAMVY 604 >gi|315180495|gb|ADT87409.1| flagellar biosynthetic protein [Vibrio furnissii NCTC 11218] Length = 372 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 185/350 (52%), Gaps = 13/350 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D KTE SS+K++ A +G S+E FSS + ++ + +F++ S++ Sbjct: 1 MSSGD----KTEQASSQKLDKARKQGQIARSKE---FSSAIMLMVCIGYFYANA-DSLSG 52 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIP 116 L + T D HI+ L+T ++ P ++ F+ I + L+ Sbjct: 53 HFMQLFEVSFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFH 112 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 NL+ + P F +++ GIKRI+S LV F+K+ KI L+ ++ ++ N+ + Sbjct: 113 -FNLSLLAPKFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSL 171 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + A+ + ++ + V ++L M++L V+DI + + +++KM+KQE+K E K+ Sbjct: 172 VRASFQTTIHFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQ 231 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P IK+R + I R + A +++ NPTH+A+AL+Y T+ +AP +VAKG+ Sbjct: 232 EGRPEIKSRIRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGK 291 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 N +A +R +A +H + + P + RS++ +N IP + AVAQ++ Sbjct: 292 NEVAFYIRTLAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQIL 341 >gi|21242681|ref|NP_642263.1| flagellar biosynthesis protein FlhB [Xanthomonas axonopodis pv. citri str. 306] gi|21108153|gb|AAM36799.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 376 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 177/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMVLARGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + ++ + ++ Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|134300232|ref|YP_001113728.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens MI-1] gi|134052932|gb|ABO50903.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens MI-1] Length = 354 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 189/351 (53%), Gaps = 6/351 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLLFFFSPGIYSVTSDL 62 + KTE + +++++A +G P + A L +IL + ++ L + I + + Sbjct: 3 EGSQEKTEQATPRRLQEARRKGQVP--KSADLNGAILLLITGLFALLYKDNLITHMQTYF 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 + +++ +D S++V +L ++ + P +L M+ +G L Q + Sbjct: 61 FTYFNNFVKQQQQD-SYLVQILIDFMINVFVVFTPLFILLMVVALGVNLAQVGFLFAPEA 119 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP +++ G+K ++S + +KS +KI +VG ++ ++ +L + P Sbjct: 120 IKPKLDKLNPINGLKNMFSGRAMFELVKSLLKITIVGWVVYAAVRGEMANLLAIFHSPPR 179 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++L KV++ + + +LD+ + + + +++MSKQE+K+E KQ+ G+P I Sbjct: 180 TLLNQVLTIALKVILWGAVVYLGIALLDLLYQRYAFQKQMRMSKQEVKEEYKQTEGDPQI 239 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + R + + + +AT+++TNPTHYA+AL+Y Q DAPV+VAKG + +A++ Sbjct: 240 KGWLRRRQRQLLANLARKEVPQATVVVTNPTHYAVALKYEQP-MDAPVVVAKGTDHMARQ 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+IA ++ +P+ E +AR L+ V I AIP ++AVA+++ +Y K Sbjct: 299 IREIARKNEVPVIENVEVARFLYANVEIGHAIPMEMFQAVAEILAMVYRMK 349 >gi|254228444|ref|ZP_04921870.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262393601|ref|YP_003285455.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] gi|151939032|gb|EDN57864.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262337195|gb|ACY50990.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] Length = 376 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 191/362 (52%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + ++S Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL----LFMMFGIGSYLIQ 113 + S L L QR E+I L + + L+ P L LF IG+ + Sbjct: 60 IMSRLFDL-----QR--EEIFDTAKLFDIALGAMTDLLFPLFLVLATLFTAAMIGAAGVG 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 I + P +++ G+KR+ + + V +KS +K++LV T + I L + Sbjct: 113 GIS-FSAQAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLV-TGVAIYLIQASQAD 170 Query: 174 LDFISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 L +S + P +I +HA + +++I + + +DI + Q +LKM+KQE+KD Sbjct: 171 LIQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K++ G P +K R + + R + +MM +A +I+TNP H+++ALRY Q + APV+ Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ Sbjct: 290 IAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|83654182|gb|ABC38245.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis E264] Length = 459 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TEA + K+ E A EG SRE + F+ +L+ Y + S + L Sbjct: 61 EDSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGEHLR 116 Query: 64 VLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L +A +L+H LSL ++P L L + + + + +++ Sbjct: 117 TMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 176 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 177 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 236 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 237 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 296 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 297 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 356 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 357 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 409 >gi|325295424|ref|YP_004281938.1| flagellar biosynthetic protein FlhB [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065872|gb|ADY73879.1| flagellar biosynthetic protein FlhB [Desulfurobacterium thermolithotrophum DSM 11699] Length = 347 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/352 (33%), Positives = 188/352 (53%), Gaps = 20/352 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + ++ + A EG S++ + ++L LL+F+ P Y L Sbjct: 6 SKTEKATPRRRQKAKEEGQVLKSQDIPIAFTLLITST-LLYFYIPFAYKKLLQLFTFDFR 64 Query: 69 ATQRKLEDISHIVFLLTHLSLSA---SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S+ V L + +SA + L++P L+ + GI S +IQ + +L + P Sbjct: 65 T--------SNNVNLWNNYLVSAKTFALLILPVFLVLFLGGIFSNIIQFGFLFSLKPLLP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITISLTENYFTMLDFISANPH 182 ++ +G+ R++S+ L ++ +K+I+ VG + ++F+ L FIS N Sbjct: 117 KLDNINPIKGLGRLFSLKTLFETFRNTLKLIIALAVGYFSGKYILSDFFS-LSFISLNNQ 175 Query: 183 SILYHAFFTVRKVLIMILLF-IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 IL + + + +L IA L W Y + LKMSK+EIK+E KQ G+P+ Sbjct: 176 IILMLKYTLLLFFIFGLLSLPIAAADFLFRRWEYEE---NLKMSKEEIKEERKQYEGHPL 232 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK+ + R +MM +A ++ITNPTHYA+ALRY + + AP ++AKG + IA Sbjct: 233 IKSAIRRKQREIAMKRMMAEIPKADVVITNPTHYAVALRYERGKMHAPKVIAKGVDNIAL 292 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++KIA EHNIPI E P LAR L++ I S IP FY+A+A+++ K+Y KK Sbjct: 293 KIKKIALEHNIPIEENPYLARVLYESCDIGSFIPEEFYQAIAKILAKVYKKK 344 >gi|301165899|emb|CBW25472.1| flagellar biosynthetic protein [Bacteriovorax marinus SJ] Length = 361 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/372 (31%), Positives = 195/372 (52%), Gaps = 38/372 (10%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYS 57 END+ KTE PS+ +IE+ G S+E + L S++ + +++ +Y Sbjct: 4 DENDSDAEKTEDPSAHRIEEFRKRGEVASSKELTSVLVLAGSLMTLGLSMVY-----MYE 58 Query: 58 VTSDL-----HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 V S+ H+ +++A K ++ IV L +SL + V P L+ + G+ + + Sbjct: 59 VLSEFIEWLYHLDVSTAYTAK--SMNTIVNKLVTVSLKS---VAPIFLVTLSIGVAANMA 113 Query: 113 QRIPVL---NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 Q I VL ++ KP R++ +GIKR++S+ +LV +K K I + I+ L + Sbjct: 114 Q-IGVLFSPDVLEWKPD--RINPLQGIKRLFSMKSLVEAIKGVFKFIFILGIVYFFLKDE 170 Query: 170 YFTM-----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 T LDF S LY F +R + I++ + + + D + + KL M Sbjct: 171 MHTFGGFFHLDFF----QSFLYGKGFLIR-LGFAIVVGLIVIAIGDFAYQKFSYKKKLMM 225 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +K+E K E KQ GNP IK R +++ R + ++M +A +I+TNPTH ++AL+Y Sbjct: 226 TKEEAKQEHKQQDGNPEIKQRIRAVQREMSQRRVMSEVPKADVIVTNPTHISIALKYDPE 285 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 +P ++AKG +++A K+R+IA H+IPI E LAR L+K V +P YKAVA+ Sbjct: 286 TMISPEVIAKGADVLALKIREIAKGHDIPIVENVPLARGLYKTVKEGQGVPRNLYKAVAE 345 Query: 345 LI---YKIYHKK 353 ++ YK+ +K Sbjct: 346 VLAFTYKLKRQK 357 >gi|83589641|ref|YP_429650.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC 39073] gi|83572555|gb|ABC19107.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC 39073] Length = 374 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 185/344 (53%), Gaps = 4/344 (1%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL-HVLL 66 + KTE + ++++ +G S + S +LAC+++L ++ Y +DL L Sbjct: 28 EEKTEEATPHRLQEVRQKGQVARSNDLSTAMVLLACVVFL-YWRRETFYQAMADLITSTL 86 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 ++L D ++ L + L+L L+ P L L G+ + Q V +L + P Sbjct: 87 QDGWHQQL-DGGSLMALGSQLALKVGLLLAPLLALAAAVGLAANFAQTGFVFSLEPLLPR 145 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + + +G++R +S L+ +KS K+++V ++ + + +L + + L Sbjct: 146 LENLDPVKGMQRFFSRRALMELLKSLAKVVVVSLVVWQLVKGQFTQLLLTVDMGLPATLD 205 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V +V + + L D + ++ L+M++QE+K+E+KQ G+P++++R Sbjct: 206 LVSRMVYRVGLGTVAVFLALAAADYVFQRREYQKNLRMTRQEVKEEMKQMEGDPLVRSRL 265 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R RH+MM A AT++ITNPTH A+ALRY + E AP +VAKG IA++++ + Sbjct: 266 REKQRQLARHRMMHAVPEATVVITNPTHVAVALRY-REEERAPRVVAKGAGSIAERIKAV 324 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A HN+P+ E P +AR+L++QV + IP Y+AVA+++ +IY Sbjct: 325 ARRHNVPVVENPPVARALYRQVELGQEIPVALYQAVAEILARIY 368 >gi|149908781|ref|ZP_01897441.1| flagellar biosynthetic protein [Moritella sp. PE36] gi|149808055|gb|EDM67996.1| flagellar biosynthetic protein [Moritella sp. PE36] Length = 375 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 11/353 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + KTE P+ KK +DA EG S+E + IL L +F +P + S+L Sbjct: 3 DSSTQEKTEEPTQKKRDDAKKEGQIARSKELATAGLILISGSSLTWF-APSFSAFFSELF 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP---VLNL 120 + T+ D ++V +L ++ +++IP +L+ + ++L+ +P + L Sbjct: 62 TIQMQLTREVTRDPQYMVVMLGEAIINMLKVLIPFILVL---NLTTFLLGIMPGGLIFVL 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +++P +++ G+KR+ S + ++ +KS +KI L+ + L+ ++ + Sbjct: 119 KNIQPKISKMNPISGLKRMVSKDTIIELIKSILKISLISFTLYKVLSLHWHELAAMAQMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238 ++L +A + + + + + A L V I Y +W KLKMSKQEIKDE K + G Sbjct: 179 LLNVLNNAMYIMS--ITLSFMGAALLIVAAIDLPYQKWSMNKKLKMSKQEIKDEHKGAEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK + K I R + ++ A A +I NPTHYA+A++Y + AP +VAKG + Sbjct: 237 SPEIKQKIKQIQRQMSQKRIDSAVPTADFVIVNPTHYAVAVKYDAARSQAPFIVAKGVDT 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A +++KIA H++ I E P L R+++ ++ IP Y AVA ++ I Sbjct: 297 MALRIKKIAESHDLDIIEAPELTRAIYHSTQVDQEIPAQLYTAVAYILTHIMQ 349 >gi|212634380|ref|YP_002310905.1| flagellar biosynthesis protein FlhB [Shewanella piezotolerans WP3] gi|212555864|gb|ACJ28318.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3] Length = 377 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 21/361 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE +S+K++ A ++G S++ + ++A + L+ P S+ Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLVMT-GP---SIAK 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI----GSYLIQRIP 116 +H ++ + ++I ++ S+ S L P L ++ + G+ + + Sbjct: 57 AMHTIMTNLFTLTRDEIFDTRQMMNIWSMVGSELAAPLLGFILLLAVIAFAGNVALGGMS 116 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISLTENYFTML 174 + P ++S G+KR++ + +V K K ++ + + + + N ML Sbjct: 117 -FSAKACMPKPSKMSPVAGLKRMFGVQAVVELTKGIAKFSVVAITAYVVLKIYLNDILML 175 Query: 175 --DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIK 230 D + N +YHA V I ILL +T ++ I Y W+ +LKM+KQE+K Sbjct: 176 SQDHLPGN----IYHALDLVS--WIFILLCASTFIIVAIDVPYQIWHHAKQLKMTKQEVK 229 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE K + G P +K R + + + + +MM A +I+ NP HYA+A++Y ++ AP Sbjct: 230 DEYKDTEGKPEVKGRIRQLQQEMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAAKSTAPF 289 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG + +A K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ Sbjct: 290 VVAKGVDEVAFKIREIAREHDVAIVTAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVF 349 Query: 351 H 351 Sbjct: 350 Q 350 >gi|152980271|ref|YP_001353777.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp. Marseille] gi|151280348|gb|ABR88758.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp. Marseille] Length = 402 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/356 (29%), Positives = 179/356 (50%), Gaps = 27/356 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S +K+E A +G+ P SRE + + +L F+ G + +L+ +LA+ Sbjct: 20 EKTEPASPRKLEQAREQGDVPRSRELATCTLLLGA--GAAFWILGG--RMVGELNKMLAA 75 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFG------IGSYLIQRIPVLN 119 E + LL H + S L+I P L+ ++ IG +L + Sbjct: 76 GLSFDREMAFDMELLLAHAAASIIDLLIAFAPAALILIVVALISPALIGGWL------FS 129 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P+F R++ +G+ + S V K+ K IL+G I + + + ++ +S Sbjct: 130 GKALQPNFGRMNPIKGLGNMVSSRAAVELGKAIAKTILIGWIAWMVMRHEFDAVM-ALSV 188 Query: 180 NPHSILYHAFFTVRKVLIMILLFIAT--LTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQ 235 P L + +L+ +FIA + V I Y W KL MS+Q+++ E K+ Sbjct: 189 EP---LKSGTEHLGHLLVFSFIFIAAGLVIVAAIDAPYQMWQHAKKLMMSRQDVRQESKE 245 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S GNP IK + + R R +MM A +++TNPTHYA+AL+Y + AP +VAKG Sbjct: 246 SEGNPEIKAKIRQQQREMARRRMMAEVPTADVVVTNPTHYAVALKYSENGMRAPRVVAKG 305 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R++A E+N+ + E P LAR+LF+ + IP Y AVA+++ ++ Sbjct: 306 ADEVAAKIRELAMENNVVLLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQ 361 >gi|28899010|ref|NP_798615.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus RIMD 2210633] gi|153836930|ref|ZP_01989597.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|260365244|ref|ZP_05777801.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|260878794|ref|ZP_05891149.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|260897389|ref|ZP_05905885.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|260899948|ref|ZP_05908343.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|4322010|gb|AAD15913.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus] gi|28807229|dbj|BAC60499.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus RIMD 2210633] gi|149749703|gb|EDM60448.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|308088249|gb|EFO37944.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|308094200|gb|EFO43895.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|308107420|gb|EFO44960.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|308115443|gb|EFO52983.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|328474453|gb|EGF45258.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus 10329] Length = 376 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/359 (28%), Positives = 188/359 (52%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + ++S Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 58 VTSDLHVLLASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + S L L KL DI+ L ++ L + + LF+ IG+ + I Sbjct: 60 IMSRLFDLKRDEIFDTTKLFDIA-----LGAMTDLLFPLFLILITLFVAATIGAAGVGGI 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + P +++ G+KR+ + + V +KS +K++LV + + + ++ Sbjct: 115 S-FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAMYLIQASQADLIQ 173 Query: 176 F-ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + P +I +HA + +++I + + +DI + Q +LKM+KQE+KDE K Sbjct: 174 LSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G P +K R + + R + +MM +A +I+TNP HY++ALRY Q + APV++AK Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRAPVVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 293 GTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|260772335|ref|ZP_05881251.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP 69.14] gi|260611474|gb|EEX36677.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP 69.14] Length = 376 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 183/362 (50%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + +Y+ Sbjct: 1 MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLIIGSVALMWFGEMLASRLYT 59 Query: 58 VTSDLHVLLASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLL--LFMMFGIGSYLIQ 113 L KL DI I LTHL ++I + L G+G Sbjct: 60 TMGRFFSLSREEIFDSSKLFDI--IAGTLTHLIFPLLLILITLFVAALIGAAGVGGV--- 114 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYF 171 + +P ++S G KR++ + +LV KS +K++LV + I ++N Sbjct: 115 ---SFSAEAARPKLSKISPLSGFKRMFGMQSLVELFKSILKVLLVAGVAFYLIDASKNDL 171 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 L + P +I +HA + +++I + + +D+ + Q KLKM+KQEIKD Sbjct: 172 FQLS-MDVYPQNI-FHALEILLNFILLISCSLLVVVAIDVPFQIWQHAEKLKMTKQEIKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G P +K R + + R + +MM +A +IITNP H+++ALRY Q + AP++ Sbjct: 230 EYKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVALRYKQGTDKAPIV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + +A K+R+IA EH I I P LAR+L+ + IP + AVAQ++ ++ Sbjct: 290 VAKGGDFLALKIREIAREHEIMIVAAPPLARALYYTTELEQEIPDGLFVAVAQVLAYVFQ 349 Query: 352 KK 353 K Sbjct: 350 IK 351 >gi|332799194|ref|YP_004460693.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1] gi|332696929|gb|AEE91386.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1] Length = 358 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 142/240 (59%), Gaps = 6/240 (2%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT---ISLTENYFTM 173 VL+L V P +R++ EG KRI+S +L+ +KS KI +V ++ I + + M Sbjct: 118 VLSLEPVSPKLERINPLEGFKRIFSRRSLLELIKSIAKITVVAYVVCTAIIKYKDLFPLM 177 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ + S+ F V LL + + LD + ++++ + L MSKQ+IK+E Sbjct: 178 LNMNLLDASSLTLSIAFEVGMKAAATLLIV---SALDYFYQWYEYETSLMMSKQDIKEEY 234 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K+ GNP IK+R + + R R +MM+ +A ++ITNPTHYA+AL Y + APV++A Sbjct: 235 KEVEGNPQIKSRIRQMQRQMARTRMMKDVEKADVVITNPTHYAVALAYDAALHSAPVVLA 294 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A+K+++IA + ++PI E +LA++L+K V I IP Y AVA+++ IY K Sbjct: 295 KGVDKLAEKIKEIATKEDVPIVENKALAQTLYKTVEIGDIIPESLYNAVAEILAFIYSLK 354 >gi|299822255|ref|ZP_07054141.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601] gi|299815784|gb|EFI83022.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601] Length = 348 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE P+ ++I+ A EGN S+E + S+L + FF I ++ + L Sbjct: 2 AKDNKTEKPTPRRIKKAREEGNVAKSKELNNAFSLLIVAGMIFFFGKWWIGNMVTAFKAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + F+L ++++P +++ ++ GI +Y +Q + + +KP Sbjct: 62 LEQPPTLGNASSYSLFFILQF-----GKVLLPVMVMVLVIGILNYAVQVGFLFSAKSIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + + T++ F N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSAVAYKGFQSHLQTLISFTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + L I + +LD + +++ L+MSKQ+IK+E+K S G P +K R Sbjct: 177 RQILQLFKNEFLALFLIIVVIGLLDFLYQRYEYKKGLRMSKQDIKEEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R+ Sbjct: 237 QRSIARGLLQGAITKKMLDATFVVNNPTHISVVMRYDKGKDHAPKLLAKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA IP+ +AR ++ I Y AV +++ ++ K+ Sbjct: 297 IAETDGIPMITNRQVARMIYYSTNEEEYIQEDLYAAVIEIMKELMDKE 344 >gi|330808231|ref|YP_004352693.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376339|gb|AEA67689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 378 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 184/356 (51%), Gaps = 11/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K++ ++ +G S+E + + +LA LL + + Sbjct: 1 MAESESGQDKTEDPTEKRLRESREKGETARSKELNTLAVMLAGAGGLLIYGGGLALDLLE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115 + + + + L S +LL +++ A + V+ LLL + G +G +L Sbjct: 61 IMRLNFSLPREVLLTPGSMAQYLLHSGKIAILAIQPVLIFLLLAAVIGPISLGGWL---- 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + P F R++ G+KR++S + L+ +K+F K +LV + L + +L Sbjct: 117 --FAAGSLAPKFSRMNPAAGLKRMFSTSALMELLKAFGKFLLVLFVALTVLQSDIDDLLR 174 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + H+ V + I + + +D+ +Q KL M+KQE++DE K Sbjct: 175 IAHEPLEQAIIHSVQLVGWSTLWIACGLILIAAIDVPIQLYQSKQKLMMTKQEVRDEHKD 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G P +K R + + R + +MM A A ++ITNPTHYA+AL+Y + +APVL+AKG Sbjct: 235 SEGKPEVKQRIRQLQREVSQRRMMAAIPDADVVITNPTHYAVALKYDPEKGNAPVLLAKG 294 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R+IA + + + E P+LARS++ ++ IP Y AVAQ++ +Y Sbjct: 295 SDFLALKIREIAVANEVMLLESPALARSIYYSTELDQEIPGGLYLAVAQVLAYVYQ 350 >gi|297617157|ref|YP_003702316.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus DSM 12680] gi|297144994|gb|ADI01751.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus DSM 12680] Length = 366 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 186/348 (53%), Gaps = 7/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY-LLFFFSPGIYSVTSDLHVLLA 67 KTE + ++ +++ +G + R L S+++ + + +L F +P Y +T Sbjct: 19 EKTEKATPRRRQESRRKGQ--VFRSVDLNSAVILLVGFAVLHFTTP--YMLTGIQGFFSR 74 Query: 68 SATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + R L ++ F +L L +++ P + ++ G+ L+Q V + Sbjct: 75 YLSDRALTQLTPATFHVMLLDAILLMAKISFPVIGAVLVAGLLVNLLQVGFVFAGEPLSI 134 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +RV+ EG KRI+S+ L+ +KS K++L G ++ L +N + F+ P S++ Sbjct: 135 KPERVNPVEGFKRIFSLRALIELVKSVAKVVLTGWVVYSVLKKNLYLFPRFVDMEPVSMV 194 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ + I + + + +LD + + + L+MSK+E+K E KQ+ G+P I+++ Sbjct: 195 MSLGNIIFEMAMKIGVVLLVVGLLDYLYQWWEHEKSLRMSKEELKQEYKQTEGDPQIRSK 254 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ R +MM +A ++ITNPTH+A+AL+Y APV+ AKGQ+ +A ++R+ Sbjct: 255 QRQKQREMAMRRMMAEVPKADVVITNPTHFAVALKYEAEAMTAPVVTAKGQDFLALRIRE 314 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A EH + + E P LAR+++ I IP Y+AVA+++ +Y +K Sbjct: 315 VAMEHQVALVENPFLARTIYYSTEIGDPIPETLYQAVAEVLAFVYRQK 362 >gi|312876517|ref|ZP_07736500.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A] gi|311796728|gb|EFR13074.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A] Length = 303 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 163/281 (58%), Gaps = 2/281 (0%) Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 LED+ LL+ + ++ ++++P L M+ Q ++ +K SF++++ Sbjct: 16 LEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLITGQSLKMSFQKINPI 75 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFISANPHSILYHAFFTV 192 EG KRI+SIN++V +KS +K++++G S T+++ +L+ N +I+ + + Sbjct: 76 EGFKRIFSINSVVELIKSILKVLIIGYT-GYSYTQSFAKKLLEMYGMNVLTIVKFSLDSA 134 Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS 252 +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + R Sbjct: 135 INLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRERQRR 194 Query: 253 RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312 +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A +H I Sbjct: 195 ISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIKHRI 254 Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I E LAR+L+ I IPP Y+AVA+++ +Y K Sbjct: 255 EIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 295 >gi|289578415|ref|YP_003477042.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus Ab9] gi|297544691|ref|YP_003676993.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528128|gb|ADD02480.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus Ab9] gi|296842466|gb|ADH60982.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 363 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/348 (31%), Positives = 183/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + L P + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLALNILAIPSLEKMMALTKYLLY 73 Query: 68 --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S + ++ I L T++ A ++IP +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIIPIILLIFVVSLVSTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ EG KRI+S LV KS K++++ I+ L Y + + + IL Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYEVSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|295696131|ref|YP_003589369.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912] gi|295411733|gb|ADG06225.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912] Length = 370 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 135/242 (55%), Gaps = 2/242 (0%) Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 IQ + P +KR+S EG +R++S+ +LV K +KI ++G I SL Sbjct: 117 FIQVGGLFAFKAASPQWKRISPVEGFRRLFSLRSLVEGAKMILKIAILGGI-GYSLARQI 175 Query: 171 FTMLDFISA-NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 F + +P ++ + V + L + L +LD + + +L+M+KQE+ Sbjct: 176 FESSGSLGGMDPTALAGWTGDQLWNVALEASLALLGLAILDAWYQRVSFERQLRMTKQEV 235 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E K++ GNP IK + + R+ + +MM+ +AT++ITNPTHYA+ALRY D P Sbjct: 236 KEEFKRTEGNPTIKRKIRERQRALAQRRMMQEVPKATVVITNPTHYAVALRYEPDSMDTP 295 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V++AKG + A ++R+ A + +P+ E P LAR L V I AIP V ++AVA+++ + Sbjct: 296 VVIAKGADAWAWRIRETARHYGVPVVENPPLARRLHAMVEIGEAIPEVLFQAVAEVLAYV 355 Query: 350 YH 351 Y Sbjct: 356 YR 357 >gi|323341371|ref|ZP_08081615.1| flagellar biosynthesis/type III secretory pathway protein [Lactobacillus ruminis ATCC 25644] gi|323091248|gb|EFZ33876.1| flagellar biosynthesis/type III secretory pathway protein [Lactobacillus ruminis ATCC 25644] Length = 355 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 182/355 (51%), Gaps = 26/355 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---------FSP---GI 55 D KTE P+ K+I D+ G +++ + +++ + +LF FSP Sbjct: 5 DGKTEKPTPKRIRDSRKRGE--VAKSPDVVAAVALFVFAMLFVPLCEFSINHFSPYFVNY 62 Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + ++ ++ S + + I ++F++T P +L+ ++ GI ++Q Sbjct: 63 LEMLANPDQMIGSLGKIAFQAI-LMIFIMTG----------PFMLIAIVIGIVGNIVQVG 111 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + +KP FK+++ G+K+++S+ L N KS VK+I+VG + E T+ Sbjct: 112 LLFTATPLKPDFKKLNPLNGLKQMFSLRALQNLAKSLVKLIIVGYLCYKKYVETIPTLTS 171 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +L + + I + + ++V D + + LKMSKQEIKDE+KQ Sbjct: 172 LSEVGTGKVLLFMLNICKDLATQIGILLVVVSVFDYAFQRYTHMKSLKMSKQEIKDEMKQ 231 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P +K ++K+ R IR+ + + AT+++ NPTH A+A++Y P ++AKG Sbjct: 232 MEGDPQVKAQRKAKHREMIRNAVAQVKD-ATVVLANPTHLAIAIKYDAEGAGVPQVLAKG 290 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + +A ++++ A + N+PI E LAR+L+ +V IP FY+A+A++I +Y Sbjct: 291 ADDVAMRIKEEAKKQNVPIIENKPLARALYPKVDAGDFIPVEFYEAIAEVIALVY 345 >gi|163750537|ref|ZP_02157775.1| flagellar biosynthesis protein [Shewanella benthica KT99] gi|161329692|gb|EDQ00681.1| flagellar biosynthesis protein [Shewanella benthica KT99] Length = 377 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 184/357 (51%), Gaps = 13/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + +++E A +G S+E S++L L P I S Sbjct: 1 MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGT-SAVLVSAAVGLAMVGPSIASSLV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLF--MMFGIGSYLIQRIP 116 + L + + ++ D + +V + + A L P L+LF ++ IG+ L+ I Sbjct: 60 TIMTTLFTQDREQIFDTNQMVLVW---GMIARELAFPMASLMLFIALVAFIGNILLGGI- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + P ++++ +G+KR++ + LV K K ++V + L+ + +L Sbjct: 116 TFSTKAFMPKTEKMNPMKGLKRMFGVQALVELTKGIAKFLVVASSAYFILSFFFNEILAL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIK 234 + S +YHA + V + ILL +T+ ++ I + W +LKM+KQEIKDE K Sbjct: 176 SRDHLPSNVYHALDLL--VWMFILLCSSTILIVVIDVPFQIWNHNKQLKMTKQEIKDEYK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G P +K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AK Sbjct: 234 DTEGKPEVKGKIRQMQREVAQRRMMAEVPSADVIVVNPEHYAVAVKYDAMKSTAPYVLAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G + +A K+R+IA EH I I P LAR+++ I+ IP + A+AQ++ ++ Sbjct: 294 GVDEVAFKIREIAREHEIAIISAPPLARAIYHTTKIDQEIPEGLFTAIAQVLAYVFQ 350 >gi|311086556|gb|ADP66637.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 383 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 137/233 (58%) Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 LN + +F +++ G KR++S +V F K +K+ +V I L ++ +L + Sbjct: 116 LNFRSLTLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLV 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +AN S L H + + +++L + + DI W +Y KLKM++QE+KDE+K+ Sbjct: 176 NANYVSSLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK R + ++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG Sbjct: 236 GNPNIKMRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A K++ +A +HNI I PSLARSL++ I IP YKAVA+++ ++ Sbjct: 296 EAAIKIQNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVW 348 >gi|219681611|ref|YP_002467997.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682168|ref|YP_002468552.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471297|ref|ZP_05635296.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621901|gb|ACL30057.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624454|gb|ACL30609.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085981|gb|ADP66063.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087137|gb|ADP67217.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087673|gb|ADP67752.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 383 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 137/233 (58%) Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 LN + +F +++ G KR++S +V F K +K+ +V I L ++ +L + Sbjct: 116 LNFRSLTLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLV 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +AN S L H + + +++L + + DI W +Y KLKM++QE+KDE+K+ Sbjct: 176 NANYVSSLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK R + ++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG Sbjct: 236 GNPNIKMRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A K++ +A +HNI I PSLARSL++ I IP YKAVA+++ ++ Sbjct: 296 EAAIKIQNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVW 348 >gi|289666118|ref|ZP_06487699.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 376 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 182/354 (51%), Gaps = 7/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDRAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V + +A ++ + L H L +++P + + + G+ L+ Sbjct: 60 ---VWMKTALSPDPTMRANPIALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLH 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P +++ GIKR++ N+L +KS ++++ VG + ++++ + + Sbjct: 117 FSSKAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALV 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S + + + +L + L +D + W KLKM+++EIK E+K+S Sbjct: 177 SQPLEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + Sbjct: 237 GSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVD 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 297 EMAFRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|294625836|ref|ZP_06704452.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599864|gb|EFF43985.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 357 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 167/340 (49%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DAL +G P+S + + + + L L S G Y + L+ Sbjct: 3 EEKTEKPTEKKLRDALRDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FADHMRALMT 58 Query: 68 SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 59 IGFDFPENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E+K+S G+P IK Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + A+P ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335 >gi|329929309|ref|ZP_08283062.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5] gi|328936678|gb|EGG33121.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5] Length = 365 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 104/355 (29%), Positives = 180/355 (50%), Gaps = 21/355 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS----------PGIYSV 58 KTE + KK +D +G S E S S +LA LL F IY Sbjct: 18 EKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYIN 77 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 ++V + Q E I+ LL L +S +F++ + +YL Q +L Sbjct: 78 RLSMNVTKDNVMQLFGEYGVQILLLLAPLFIS----------IFVIALVANYL-QVGFML 126 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +K F ++ +G K I+S+ +LV F+KS +K+ ++G ++ +L + + Sbjct: 127 TGETLKMKFSKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLST 186 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P +I + + I + + L VLD + + + ++MSKQ+IKDE K+ G Sbjct: 187 MGPDTIFHFVADITMSLGFKIAVGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEG 246 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK + + R +MM+ A +IITNPTH+A+A++Y + +AP ++AKGQ+ Sbjct: 247 DPLIKGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDF 306 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++++IA EH I E LAR+L+++ I +IP ++AVA+++ +Y K Sbjct: 307 MALRIKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 361 >gi|225850260|ref|YP_002730494.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] gi|225645107|gb|ACO03293.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] Length = 349 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 106/356 (29%), Positives = 196/356 (55%), Gaps = 25/356 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + ++ + A EG S++ + +S+L + ++F + P Y++ ++ S Sbjct: 6 SKTEKATPRRRQKAREEGQVARSQDIPIAASLLIVAV-MMFAYIPFSYNILTEYFHHTFS 64 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + D++ F+ + + A LV+P L+ + G+ S ++Q +L+ + P Sbjct: 65 NPFHLIPDLNR-GFIYESVKVLAI-LVLPFFLILLAIGVFSNVVQFGFLLSGKALVPKID 122 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN---PHSIL 185 R++ G+ RI+S+ L +++ +K++ + YF ++ IS + + L Sbjct: 123 RLNPVSGLGRIFSMKTLFELVRNLLKLLFASVV-------AYFLLMKIISESFNMSYLPL 175 Query: 186 YHAFFTVRKVLIMILLFIATLTV--LDIGWSYHQWYSK--LKMSKQEIKDEIKQSYGNP- 240 H + + K +IM++L A +++ I + Y +W + +KMSK EIK+E K GNP Sbjct: 176 NHEIYFLFKYIIMLILAFAVISIPIAIIDFIYRKWEHEENIKMSKHEIKEERKMYEGNPH 235 Query: 241 ---IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 I+ +Q+ IA R MM +A ++ITNP HYA+AL+Y + + AP ++AKG+N Sbjct: 236 VKAAIRKKQREIAMMR----MMAELPKADVVITNPEHYAVALKYEKGKMAAPKVIAKGKN 291 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA+K+++IA +++IP+ E+P LARSL+ I IP Y A+A+++ KIY +K Sbjct: 292 HIAQKIKEIAKKYDIPVVEDPPLARSLYSSCEIGDMIPENLYVAIAKILAKIYRRK 347 >gi|166712016|ref|ZP_02243223.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 376 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 179/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDGAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S E+ + +L L +++P + + + G+ L+ + Sbjct: 60 AWMKTALSPDPTMRENPMALFGHFGNLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|261407965|ref|YP_003244206.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] gi|261284428|gb|ACX66399.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] Length = 362 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 102/352 (28%), Positives = 184/352 (52%), Gaps = 15/352 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY------SVTSDL 62 KTE + KK +D +G S E S S +LA LL F G Y + +D+ Sbjct: 15 EKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIF---GGYMRDRTVRLFTDI 71 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LFMMFGIGSYLIQRIPVLNLN 121 ++ S K +++ L + L+ P + +F++ + +YL Q +L Sbjct: 72 YINRLSMNVTK----DNVMELFGEYGVQILLLLAPLFISIFVIALVANYL-QVGFMLTGE 126 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +K F ++ +G K I+S+ +LV F+KS +K+ ++G ++ +L + + P Sbjct: 127 TLKMKFSKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGP 186 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +I + + I + + L VLD + + + ++MSKQ+IKDE K+ G+P+ Sbjct: 187 DTIFHFVADITMSLGFKIAIGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPL 246 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK + + R +MM+ A +IITNPTH+A+A++Y + +AP ++AKGQ+ +A Sbjct: 247 IKGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMAL 306 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++IA EH I E LAR+L+++ I +IP ++AVA+++ +Y K Sbjct: 307 RIKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 358 >gi|220934507|ref|YP_002513406.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7] gi|219995817|gb|ACL72419.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7] Length = 384 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 182/355 (51%), Gaps = 4/355 (1%) Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+END + K+E P+ K++ +A +G SRE + +LA +L G+ S Sbjct: 1 MAENDDSSQEKSEQPTPKRLREAREKGQVARSRELNTTLVLLAGAGAMLVLGG-GMLSRI 59 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVL 118 ++ + + D S + +L L +S S L++ P + ++ + + Sbjct: 60 QEMVRGSFVLEREAIFDASTMQAMLI-LRISESLLMLLPLFGILLVAAVAGPIAMGGGGF 118 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P + +++ G+KRI+S L+ F K+ K L+ I L ++L Sbjct: 119 SGKAMAPKWNKLNPIAGLKRIFSWQGLMEFGKTLAKFALITAIAGSLLWGLSDSLLGLGY 178 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + L A + V +++ + + ++D+ + +L+M+KQ++KDE K++ G Sbjct: 179 QSLEQGLGRAAWIVGWTFLLLAASLILVALVDVPFQLWNHQKQLRMTKQQVKDEYKETEG 238 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 P +K+R + R +MM A +A +++TNPTHYA+ALRY Q + AP +VAKG +L Sbjct: 239 KPEVKSRIRQTQMEIARRRMMAAVPKADVVVTNPTHYAVALRYDQNGSGAPKVVAKGADL 298 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R+ A E +P+F P LAR++F ++ IP Y AVAQ++ +Y K Sbjct: 299 VAAEIRERAREAGVPLFPAPPLARAIFYSTRLDQEIPAGLYVAVAQVLAYVYQLK 353 >gi|254785483|ref|YP_003072912.1| flagellar biosynthesis protein FlhB [Teredinibacter turnerae T7901] gi|237686236|gb|ACR13500.1| flagellar biosynthetic protein FlhB [Teredinibacter turnerae T7901] Length = 377 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 182/355 (51%), Gaps = 9/355 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE + +++E A EG P SRE + + +LA I L+ F G + Sbjct: 1 MAEQDSSQEKTEEATPRRLEKAREEGQVPRSRELTTTAVLLAGTISLVLF---GGVMANA 57 Query: 61 DLHVL-LASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVL 118 L ++ L R++ ++F S + L ++P + ++ I + + Sbjct: 58 QLEIMRLNFDLPREVIFDPELMFAQLGASFKEALLSLMPLFAVILVAAIAGPVALGGWLF 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P R+ +G+ R++S+ +L+ +KS K+ +V + + L++ +L Sbjct: 118 SSKALAPKLNRMDPIKGLGRMFSMKSLIELVKSIGKVAIVVGVAFVLLSQMKTALLGLSQ 177 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQS 236 + H+ + +LL +T+ + + + W KLKMS+Q+I+DE+K + Sbjct: 178 EGLEQAIIHSL--TLSLWAAVLLSASTIVIAAMDIPFQIWDHSKKLKMSRQDIRDEMKDT 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K++ + + + +++MM A A ++ITNPTHY++ALRY PV+VAKG Sbjct: 236 EGKPEVKSKIRQMQQEMAQNRMMSAVPEADVVITNPTHYSIALRYDPKTMSTPVVVAKGI 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R+IA E+ I + P LAR+++ + IP Y AVAQ++ ++ Sbjct: 296 DFVAMKIREIARENKIEFVQAPLLARAIYATTDLEDEIPEGLYVAVAQVLAYVFQ 350 >gi|78045982|ref|YP_362157.1| type III secretion system protein HrcU [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927677|ref|ZP_08188905.1| HrcU protein [Xanthomonas perforans 91-118] gi|78034412|emb|CAJ22057.1| HrcU protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541878|gb|EGD13392.1| HrcU protein [Xanthomonas perforans 91-118] Length = 357 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 169/340 (49%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DA +G P+S + + + + L L S G Y + + L+ Sbjct: 3 EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FSDHMRALMT 58 Query: 68 SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 59 IGFDFSEHTRDAAAINRALGHIGIQGLLLMLPFLAACLVAGMAGGAFQTGLNASLKPVAP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P + Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRALMPMIIGLAYETPLDVA 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS +W +MSK E K E+K+S G+P IK Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQRWLFIRDKRMSKDEQKREVKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +++K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 DKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + AIP ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEPLFETVA 335 >gi|310641562|ref|YP_003946320.1| flagellar biosynthetic protein flhb [Paenibacillus polymyxa SC2] gi|309246512|gb|ADO56079.1| Flagellar biosynthetic protein FlhB [Paenibacillus polymyxa SC2] Length = 370 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 105/352 (29%), Positives = 183/352 (51%), Gaps = 15/352 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE + KK +DA +G S E A + CL+ +F + D+ V Sbjct: 23 EKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIFV- 81 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVI--PGLLLFMMFGIGSYLIQRIPVLNLNHV 123 R +++ LL L++ P + ++ GI + +Q +L + Sbjct: 82 -----NRLSMEVTPNTTLLMMGEYGVQILIMLAPIFVGAIVIGIAANYMQIGFLLTGEGI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P F ++ +G K I+S+ +LV F+KS +K+ ++G ++ L + + + Sbjct: 137 TPKFSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKADLPKLAEMSGDQ 196 Query: 184 IL-YHAFFTVRKVL-IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +L + A T+ L I ++LFI L +LD + ++ LKMSKQ+IKDE K+ G+P+ Sbjct: 197 MLSFTASLTMELGLKIGVVLFI--LAILDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPL 254 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK + + R +MM+ A +IITNPTH+A+AL+Y +E +AP ++AKGQ+ +A Sbjct: 255 IKGKIRERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVAL 314 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++IA + + E LAR+LF++ I AIP ++AVA+++ +Y K Sbjct: 315 RIKEIAKQSGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366 >gi|74055047|gb|AAZ95852.1| FlhB [Aeromonas hydrophila] Length = 376 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 181/358 (50%), Gaps = 16/358 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +TE P+ K+++ A +G S+E S +LA ++ L + + Sbjct: 2 DDTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAA-VFGLLMVKESLAGAMVKIL 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121 + + + + D + + ++ L L+ P LLFM+ I +++ + + +N Sbjct: 61 TIGFTLDRDQAFDPNAMGAMVPAL---LRELLHPLGLLFMLVAIAAFIGNTL-MGGMNFS 116 Query: 122 --HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-IS 178 + P + ++S GIKR++ + +LV +KS K++ + L+ + +L+ + Sbjct: 117 SEAMLPKWSKLSPLNGIKRMFGVQSLVELIKSIAKVVFITLFAWWMLSSQFNHLLNLSLE 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQS 236 P I+ + ++I+L A + ++ I + QW +LKM+KQE+KDE K S Sbjct: 177 GYPGGIIDALDLLL---WMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDS 233 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKG 295 G P +K R + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG Sbjct: 234 EGKPEVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGAAPKVVAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA K+R+IA E+ IPI P L R++F I IP + AVAQ++ +Y K Sbjct: 294 TDEIAMKIREIAREYEIPIMPSPGLTRAIFHSTEIGHEIPEGLFAAVAQVLAYVYQLK 351 >gi|289670566|ref|ZP_06491641.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 376 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 182/354 (51%), Gaps = 7/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDRAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V + +A ++ + L H L +++P + + + G+ L+ Sbjct: 60 ---VWMKTALSPDPTMRANPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLH 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P +++ GIKR++ N+L +KS ++++ VG + ++++ + + Sbjct: 117 FSSKAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALV 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S + + + +L + L +D + W KLKM+++EIK E+K+S Sbjct: 177 SQPLEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + Sbjct: 237 GSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVD 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y Sbjct: 297 EMAFRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350 >gi|92114138|ref|YP_574066.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens DSM 3043] gi|91797228|gb|ABE59367.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens DSM 3043] Length = 387 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 178/356 (50%), Gaps = 13/356 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTS 60 D+ + KTE P+ ++++ A +G SRE + F +LA + L+ +Y V Sbjct: 3 EDSDEEKTEDPTPRRLDKAKEDGEVARSRELTTFM-LLAVGVGSLWSLGGHLYDRMGVVM 61 Query: 61 DLHVLLASATQRKLEDISHIVFLL---THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + L + A + V+ L T L+L L++ + L +G +LI Sbjct: 62 EQSFLFSRAEAFDTAVLMAHVWTLGQNTLLALLPLFLIVTVVALTAPVMLGGWLI----- 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + ++P +++ +G KR++S L K+ K +LVG + L N +L + Sbjct: 117 -SGKALQPQISKLNPLKGFKRMFSSQVLAELGKAVAKSVLVGGVAVAFLWLNRGDLLGLM 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S L L + + + + ++D+ + + KL+M+K EIK E K++ Sbjct: 176 SLPLSEALARGMDLAALCLSLCVAMLIVVVLIDVPFQLWSFTKKLRMTKDEIKKEHKETE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R ++ +S R +MM A +I+TNPTHYA+AL Y + +AP +VAKG + Sbjct: 236 GDPQVKARMRAQQQSMARRRMMAKVPEADVIVTNPTHYAVALSYEGSYMEAPRVVAKGSD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R++ H +P+ E P LAR+L + V I+ +P Y AVA+++ Y K Sbjct: 296 LVATRIRELGEAHGVPLLEAPPLARALHQHVDIDQEVPATLYTAVAEVLAWAYRLK 351 >gi|260893861|ref|YP_003239958.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4] gi|260866002|gb|ACX53108.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4] Length = 356 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 100/367 (27%), Positives = 194/367 (52%), Gaps = 35/367 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLLFFF-SPGIYS 57 MS KTE + +++E+A +G ++R A L S LACL +++ + + + Sbjct: 1 MSLFGPGQEKTEPATPRRLEEARRKGQ--VARSAEL-SGALACLALVFVCYLLKEQALLT 57 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---------RLVIPGLLLFMMFGIG 108 +T +H +S + LT S + + L+ P L ++ IG Sbjct: 58 LTRGMH-----------HSLSFLTGDLTPASAAVALGFWGRILLELLAPFFLTALVLAIG 106 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 L Q V + + + P R+S+ G+ RI+S+ LV K+F K+++VG+I + + Sbjct: 107 VNLAQVGFVFSPSVLLPKLDRISITRGLGRIFSLQGLVELGKAFFKLVIVGSIAVFVIRQ 166 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + + P + + ++ +++ L L +LD + +++ +L M+K E Sbjct: 167 EIPRLFLLLETPPLAGFTLVAGILLRLGVVVGLAYLALGLLDFFYQRNRYRKELMMTKAE 226 Query: 229 IKDEIKQSYGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +K+E+KQ+ G+P++K R + ++ +RIR ++ +AT+++TNP H A+AL+Y + Sbjct: 227 LKEELKQTEGDPLVKGWIRRRLRQVSLNRIRQEV----PKATVVVTNPLHIAVALKY-EP 281 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 +AP +VAKG +A+K+++IA + +P+ E P +A+ L+++V + IPP Y+AVA+ Sbjct: 282 PMNAPKVVAKGAGFLAQKIKEIARANGVPVVENPPVAQFLYRRVEVGQEIPPALYQAVAE 341 Query: 345 LIYKIYH 351 +I +Y Sbjct: 342 IIALVYR 348 >gi|304404263|ref|ZP_07385925.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus YK9] gi|304347241|gb|EFM13073.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus YK9] Length = 369 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 186/348 (53%), Gaps = 7/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE+ + KK ++A +G S+E L + + +++ F+ Y S + + Sbjct: 20 EKTESATPKKRQEAREKGQVAKSQE--LPGAFILLFVFMSFYMIGPYYK--SRILAMFGD 75 Query: 69 ATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L + +++ L T L ++ P + ++ + +Q + + +K Sbjct: 76 LFEDWLTLDLTMGNVMSLFTQLMYEMLMMLAPIFAIALLVALLGNYVQVGILFTGDPLKM 135 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++S +G K I+++ +V F+K+ +K++++G ++ ++L + ++ + +L Sbjct: 136 KFSKLSPIQGFKNIFAMRTVVEFIKNILKLVVIGLVVFMTLKSQWGRIIQLDTLPVEYVL 195 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 K+ I I + + L + D + +++ L+MSKQ+IKDE K++ GNP+IK R Sbjct: 196 GFTGGIALKLGIEIGVILVVLALGDYFYKKYEYEKGLRMSKQDIKDEFKKTEGNPLIKGR 255 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +IITNPTH+A+AL+Y ++ +APV++AKG + +A ++R+ Sbjct: 256 IRERQRKMALQRMMQDVPKADVIITNPTHFAVALKYDASKMEAPVVLAKGMDHVALRIRE 315 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH + E LAR+L+ + I +IP ++AVA+++ +Y K Sbjct: 316 TAKEHGVITMENKPLARALYDRSEIGDSIPSDLFQAVAEVLAYVYKLK 363 >gi|15616856|ref|NP_240069.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386798|sp|P57334|FLHB_BUCAI RecName: Full=Flagellar biosynthetic protein flhB gi|25322197|pir||C84958 flagellar biosynthetic protein flhB [imported] - Buchnera sp. (strain APS) gi|10038920|dbj|BAB12955.1| flagellar biosynthetic protein flhB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 383 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 137/233 (58%) Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 LN + +F +++ G KR++S +V F K +K+ +V I L ++ +L + Sbjct: 116 LNFRSLTLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLV 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +AN S L H + + +++L + + DI W +Y KLKM++QE++DE+K+ Sbjct: 176 NANYVSSLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMRDELKEKE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK R + ++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG Sbjct: 236 GNPNIKMRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIG 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A K++ +A +HNI I PSLARSL++ I IP YKAVA+++ ++ Sbjct: 296 EAAIKIQNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVW 348 >gi|212639548|ref|YP_002316068.1| flagellar biosynthesis protein FlhB [Anoxybacillus flavithermus WK1] gi|212561028|gb|ACJ34083.1| Flagellar biosynthesis pathway, component FlhB [Anoxybacillus flavithermus WK1] Length = 360 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 198/358 (55%), Gaps = 27/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SVT-----SD 61 KTE + +K ++ +G +++ A + ++ L +++L+ FS G++ ++T S Sbjct: 14 EKTEKATPRKRQEVRKKGQ--VAKSADVTAAFLMLIVFLVLSFSSGMWGDAITRLFRQSF 71 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 H T ++ I V LL L+L LV P L + + + +Q + Sbjct: 72 QHYFFMDVTIDSVQLI--FVDLLQQLAL----LVGPIFLAAIAAALFANFVQVGFLFTTE 125 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++ ++ +G KRI+S+ LV +KS +K++ + +++T S+ + + D +S + Sbjct: 126 PLQMKLSKLDPIQGFKRIFSLRALVELLKSILKVLFI-SVVTFSIL--WMHIDDILSLSH 182 Query: 182 HSILYHAF----FTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 SI A T++ L+ + LLF L++ D + + + ++MSKQ+IKDE K+ Sbjct: 183 KSIGAIAATLGRLTIQMGLVASVALLF---LSLFDYLYQRYDFEKNIRMSKQDIKDEYKK 239 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P+IK+R K R +MM+ A ++ITNPTH+A+AL+Y + + DAP++VAKG Sbjct: 240 TEGDPLIKSRIKQKQREMAMRRMMQEVPEADVVITNPTHFAVALKYDEQQADAPIVVAKG 299 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A+K++ IA ++++ I E LAR+L+ Q I IP F+KAVA+++ +Y K Sbjct: 300 ADYMAQKIKDIAKKNDVMIVENRPLARALYDQTDIGMVIPEAFFKAVAEILAYVYKTK 357 >gi|87307411|ref|ZP_01089556.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM 3645] gi|87290151|gb|EAQ82040.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM 3645] Length = 369 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 104/367 (28%), Positives = 187/367 (50%), Gaps = 35/367 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSS-ILACLIYLLFFFSPGIY--- 56 M+E D D+K+E P+ + ++A N+G I++ L S+ +L + ++ +FS I+ Sbjct: 1 MAEQD--DDKSEDPTQHRRDEARNQGQ--ITKSQDLISAGMLVIALGVIMYFSQSIFHFF 56 Query: 57 --------SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108 SV L V A + + ++T P LLL + I Sbjct: 57 GDFTRDKLSVPPPLEVSFGWAINENATAVWRLASVMT-----------PILLLMFVAAIA 105 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 L+Q + + + KR++ G R++++ N V F +K+++V T+ +SL Sbjct: 106 LNLMQTGFLFLPDKLSLDIKRINPMSGFGRLFALANFVKFGFGIIKVLIVSTVAAVSLYY 165 Query: 169 NYFTMLDFISANPHSI----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 + T+L + I L AF+T K+ + L ++D + + + LKM Sbjct: 166 DMPTILGLSELSAGEIASFLLTTAFWTSMKIAAAL----LILALMDYAFQWWKHEQDLKM 221 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +KQE+++E+K G+P + R++ +AR ++M +A ++TNPT A+AL+Y Sbjct: 222 TKQEVREEMKSLQGDPSLIARRRQVARQLAMNRMSTDVPKADFVVTNPTELAIALKYDPY 281 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 + AP++VAKG L+A+++R++A E NIPI E LAR+L++ I+ AIP Y AVA+ Sbjct: 282 KMAAPIVVAKGAGLVAQRIRRLALESNIPIVERKELARALYRDAEIDQAIPAEQYAAVAE 341 Query: 345 LIYKIYH 351 ++ +Y Sbjct: 342 VLRYVYE 348 >gi|146296299|ref|YP_001180070.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409875|gb|ABP66879.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 366 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 107/346 (30%), Positives = 190/346 (54%), Gaps = 3/346 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + +K ++A G SRE + ++L +++L F +S ++ + S + Sbjct: 15 TKTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLFVHPLQSYGKYFFGN 74 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 +EDI+ L + + +LV+P ++ M Q ++ +K SF+ Sbjct: 75 LNY-NIEDIADASRLFSAIITITLKLVLPFCIVIMFMTALVEWAQSGFLITSESLKVSFQ 133 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+SIN++V +KS +KI+++G +S +L+ + SI+ + Sbjct: 134 KINPIEGFKRIFSINSVVELIKSILKILIIGYTGYLSTKTFAGKLLEMYDMSLISIVKFS 193 Query: 189 F-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 F T+ +L M ++F + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK+R + Sbjct: 194 FDSTINLILWMSIMFFG-IAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIR 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A Sbjct: 253 ERQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKEEA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ I I E LA+SL+ + IPP Y AVA+++ +Y K Sbjct: 313 KKYKIEIVENKELAQSLYNMCEVGDFIPPELYHAVAEVLAYVYSLK 358 >gi|308068671|ref|YP_003870276.1| flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681] gi|305857950|gb|ADM69738.1| Flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681] Length = 370 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 13/351 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE + KK +DA +G S E A + CL+ +F + D+ V Sbjct: 23 EKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIFV- 81 Query: 66 LASATQRKLEDISHIVFLL-THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + +E + L+ + ++ P + ++ GI + +Q +L + Sbjct: 82 ----NRLSMEVTPNTTMLMMGEYGVQILIMLAPIFIGAIVIGIVANYMQIGFLLTGEGIT 137 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F ++ +G K I+S+ +LV F+KS +K+ ++G ++ L + + + + Sbjct: 138 PKFSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKTDLPKLAEMSGDQM 197 Query: 185 L-YHAFFTVRKVL-IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 L + A T+ L I ++LF+ L VLD + ++ LKMSKQ+IKDE K+ G+P+I Sbjct: 198 LSFTASLTMELGLKIGVVLFV--LAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLI 255 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + + R +MM+ A +IITNPTH+A+AL+Y +E +AP ++AKGQ+ +A + Sbjct: 256 KGKIRERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALR 315 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA ++ + E LAR+LF++ I AIP ++AVA+++ +Y K Sbjct: 316 IKEIAKQNGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366 >gi|300722693|ref|YP_003711983.1| putative flagellar export protein [Xenorhabdus nematophila ATCC 19061] gi|297629200|emb|CBJ89797.1| putative part of export apparatus for flagellar proteins [Xenorhabdus nematophila ATCC 19061] Length = 339 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 125/219 (57%) Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194 G+K+I+S+N L K+ +K LVG + + N+ ML+ I+ P L A + Sbjct: 89 GLKKIFSMNALAELFKAILKASLVGGGAALFIWLNWPAMLNLIAQPPLMALNDAVLMMIF 148 Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 +IL + + D+ + KL+M++QEIKDE K+ G+P +K R + R+ Sbjct: 149 ASYIILFMLIPMVAFDVLYQIRSHLKKLRMTRQEIKDEFKEQEGDPHVKARIRQQQRAAA 208 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG LIA +++++ E+ IP+ Sbjct: 209 RKRMMADVPKADVIVTNPTHYAVALQYDSKKMSAPKVLAKGAGLIALRIKEMGAENRIPL 268 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 269 LEAPPLARALFRYAEVGGFIPAALYAAVAEVLAWVYQLK 307 >gi|84624133|ref|YP_451505.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898983|ref|YP_201256.2| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae KACC10331] gi|6969591|gb|AAF33828.1|AF226282_2 flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae] gi|84368073|dbj|BAE69231.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 376 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDGAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S E+ + L L +++P + + + G+ L+ + Sbjct: 60 AWMKTALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQ 350 >gi|188576802|ref|YP_001913731.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576995|ref|YP_001913924.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521254|gb|ACD59199.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521447|gb|ACD59392.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 376 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S +++ ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDGAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S E+ + L L +++P + + + G+ L+ + Sbjct: 60 AWMETALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQ 350 >gi|322421718|ref|YP_004200941.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18] gi|320128105|gb|ADW15665.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18] Length = 352 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 189/361 (52%), Gaps = 23/361 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +KTE P+SKKI DA ++GN SRE + +++ +I L + S GI Sbjct: 2 SDDKHSKTEKPTSKKISDAKSKGNVARSREMTSAVTLITAMIAL--YASSGI-------- 51 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-----GLLL--FMMFGIGSYLIQRIP 116 + Q ++DI + + L+I G++L F++ GI S L I Sbjct: 52 --MLKTLQGTMKDIFGGLASIEITPGGVHHLMIKEFANLGIMLTPFLLVGIISGLAVEIS 109 Query: 117 VLNLN----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 +N +K R++ +G+ R+++ +++ +KSF+K+ +VG + L E Sbjct: 110 QGGINLSSEKLKFDLGRLNPVQGMGRLFNKDSVFQVVKSFIKMGIVGYMAYKILAEEMEG 169 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 ++ + + IL K+++ + L VLD+ + ++ LKM+KQE+KDE Sbjct: 170 IIFLVDQDLLGILQFIGHISFKIVLHTCGVLIILAVLDLAFVKWRFLDNLKMTKQEVKDE 229 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + G+P IK +Q+ A R +M + A +++TNPTHYA+AL+Y + + APV++ Sbjct: 230 HKNTEGDPAIKGKQRQKAFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVL 289 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 KG + +A +++ +A E+N+ + E LAR L+ QV S IP + AVA+++ +Y Sbjct: 290 FKGVDQMALQIKIVARENNVTLVENRFLARELYAQVEEGSEIPEGLFAAVAEILAYVYSL 349 Query: 353 K 353 K Sbjct: 350 K 350 >gi|257095372|ref|YP_003169013.1| flagellar biosynthesis protein FlhB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047896|gb|ACV37084.1| flagellar biosynthetic protein FlhB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 379 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 103/356 (28%), Positives = 172/356 (48%), Gaps = 28/356 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +TE S++++E A EG P SRE F IL +F P + +A+ Sbjct: 8 ERTEPASARRLERAREEGQVPRSREVGAFL-ILIVAAAAFWFIGPWMVQ-------RMAA 59 Query: 69 ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQRI 115 +R L + ++ L LS A V P + ++ F +GS+ Sbjct: 60 VFRRGLAFDHGLTREPQLVLVRLADLSADALLSVAPLFVALLVAALLSPFFVGSW----- 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + ++P R+ +G+ R+ S + L +K+ K +LVG + L +L Sbjct: 115 -NFSAKALQPDLSRLDPLKGLSRLVSWSGLAELVKAVAKALLVGGVAVGVLWSERGDLLA 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + + L A + + I+ + + +D+ + Q++ KLKMS+QE+K E K+ Sbjct: 174 MFAQSGQLGLVSAGHLLSFSFLAIVSAMLLIVAIDVPFQLWQYHDKLKMSRQEVKQESKE 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 GNP IK R + + R R +MM A A +I+TNPTHYA+AL Y + AP ++AKG Sbjct: 234 LEGNPEIKGRIRQLQREAARKRMMAAVPAADVIVTNPTHYAVALAY-SSGMRAPKVLAKG 292 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A K+R++ E+ IP+ E LAR+L + V ++ IP Y AVA+++ +Y Sbjct: 293 MGEVALKIRQVGAENGIPMIEAAPLARALHRHVELDREIPAGLYAAVAEVLAYVYQ 348 >gi|33596846|ref|NP_884489.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33600620|ref|NP_888180.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568219|emb|CAE32132.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33573547|emb|CAE37538.1| putative type III secretion protein [Bordetella parapertussis] Length = 349 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 181/349 (51%), Gaps = 19/349 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67 KTE P+ K++ D+ +G SR+ + L C ++ F +P I + L +LA Sbjct: 4 EKTEQPTPKRLRDSREKGEVAHSRD--FTQTALICALFGHFLINAPSILASLRAL--ILA 59 Query: 68 SATQRKLEDISHIVFL---LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A D + V L LT + A R++ P +L+ + G+ + +Q VL +K Sbjct: 60 PAA---FADQAFAVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLK 116 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PS ++++ +K I+S NL+ F+KS KI+ + ++T+ + ++ L + A PHS Sbjct: 117 PSAEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDS----LQPLMAVPHSG 172 Query: 185 LYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L V ++L +++ L +++ D+ W +Q+ L+MSK E+K E K+ G+P Sbjct: 173 LDGLRTGVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK ++K + + I H RAT+++TNPTH A+AL Y E P ++A GQ +A Sbjct: 233 HIKQQRKHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 M + A + +P+ + +LAR+L Q ++ IP + VA ++ + Sbjct: 293 ALMVEAARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAV 341 >gi|225849160|ref|YP_002729324.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] gi|225644259|gb|ACN99309.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] Length = 352 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 108/360 (30%), Positives = 194/360 (53%), Gaps = 32/360 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFFFS--PGIYSVT-SD 61 KTE + K+ + A EG S + SLF L + Y+ F + G + T S+ Sbjct: 6 RKTEKATPKRRQKAREEGQVLKSTDVAVALSLFVVFLVMIFYIPFLYKYLLGYFKYTFSN 65 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L+ + + + I F L++ L++P + + + GI + + Q + L Sbjct: 66 PFYLIPEESGK-----NFIWFTFKVLAI----LILPFVSILFIVGIVANVAQFGFLFTLK 116 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT---MLD--- 175 + P +++ G++R++S++ L +KS +K+ +++L +YF +LD Sbjct: 117 PLTPKLSKINPISGLQRLFSLSTLFELVKSILKL-------SLALFVSYFLVSYLLDGFL 169 Query: 176 -FISANPHSILYHAFFTVRKVLIMILLFIAT-LTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 +++AN +S +Y T+ +LIM F++ + + D + +++ LKM+K E+K+E Sbjct: 170 VYMTANINSQIYILAKTII-ILIMAFTFLSIPIAIADFFYRRYEYEENLKMTKDEVKEER 228 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K GNPI+K + R +M+ +A ++ITNP HYA+AL+Y + + AP ++A Sbjct: 229 KSYEGNPIVKKEIRKRMRQLALKRMIAEVPKADVVITNPDHYAVALKYEKGKMKAPQVIA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KGQ+LIA K++++A EHN+ I E+P LARSL+ + IP FY+AVA+++ IY +K Sbjct: 289 KGQDLIALKIKEVAKEHNVKIVEDPPLARSLYSSCEVGDYIPEDFYEAVAKILAVIYKQK 348 >gi|313905147|ref|ZP_07838516.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6] gi|313470050|gb|EFR65383.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6] Length = 354 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 185/358 (51%), Gaps = 22/358 (6%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP---GIYSVTSDL 62 A D+KTE P+ K+ +A EGN S++ + +LA + L + I S+ ++ Sbjct: 2 ANDDKTEQPTEKRKREAREEGNVFHSKDIVTVAVLLAGTMILRLRITDIQTTIKSMFFEV 61 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLL-FMMFGIGSYLIQRIPVLNL 120 L+ +TQ L H L+ +L A+ +P GL F+ F G + N Sbjct: 62 LNLMKGSTQNMLS--RH---LMVSFALDAAVCALPIGLAAAFIEFVAGGAQTR----FNF 112 Query: 121 --NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF---TMLD 175 +KP KR++ G+KR++S+ +V +K+ K +++ + + L ++ M+D Sbjct: 113 AKKALKPQAKRMNPLNGLKRMFSLKGVVEALKNIAKTVVLVVFVYLILKDDIVPIAKMID 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + +S L+ F + ++ I L + + D + HQ+ L M+KQE+KDE K Sbjct: 173 EPISQANSQLFSMMFNL---VLRICLAFSVIAAFDFMFQKHQYKKSLMMTKQEVKDEYKN 229 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + GNP IK R K R + +M++ A +II NPTH A+A++Y +APV++AKG Sbjct: 230 TEGNPEIKGRIKKKQREIAQRRMIQQVPSADVIIRNPTHVAVAIKYDPERAEAPVVLAKG 289 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A ++ ++ E+ +P E LAR+L+ +N IP +Y AVA+L+ IY ++ Sbjct: 290 VDSVALRIIEVGEENGVPWIENKPLARALYGACELNDQIPSEYYGAVAELLVYIYKQQ 347 >gi|51894124|ref|YP_076815.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM 14863] gi|51857813|dbj|BAD41971.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM 14863] Length = 361 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 183/346 (52%), Gaps = 6/346 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +TE P+ ++++ A EG ++R L + L + L G YSV ++ + Sbjct: 8 ERTEEPTPRRLQKAREEGR--VARSTDLVAG-LGLVAATLALRGLGGYSVQQVTGGMVGA 64 Query: 69 -ATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 T R LE ++ +L R V+P L+ + G+ + +Q + L + P Sbjct: 65 FETLRPLELTPETTAAVMQDWALIGLRAVLPIALVVVAIGVVAGTLQTRFIFTLRALVPR 124 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+ RI+S+ + +K +K+ +G I S+ + I+ + L Sbjct: 125 FATLNPITGLTRIFSLRTVTELVKGLIKLAAIGYIAYRSVRGLVPQFPNLIAQTVPAGLS 184 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V V++ + L + VLD G+ Y ++ ++M+KQE+K E ++ G P +K+RQ Sbjct: 185 AIADMVLDVMLAVGLAYLVVGVLDYGYQYWEFRRSMRMTKQEVKQEHREQEGAPELKSRQ 244 Query: 247 KSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +R + ++ A +++TNPTH+A+AL+Y +++AP +VAKG +L+A +++K Sbjct: 245 RQRMRELAMRRRALKEVPGADVVVTNPTHFAVALKYEAAKDEAPRVVAKGADLLALEIQK 304 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA H++P+ E +LAR L+ V + IPP +Y+AVA+++ +Y+ Sbjct: 305 IARAHDVPLVENRTLARGLYYDVEVGRLIPPEYYQAVAEVLAFVYN 350 >gi|33593237|ref|NP_880881.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603237|emb|CAC79582.1| bscU [Bordetella pertussis Tohama I] gi|33563612|emb|CAE42513.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382646|gb|AEE67493.1| putative type III secretion protein [Bordetella pertussis CS] Length = 349 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 180/349 (51%), Gaps = 19/349 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67 KTE P+ K++ D+ +G SR+ + L C ++ F +P I + L +LA Sbjct: 4 EKTERPTPKRLRDSREKGEVAHSRD--FTQTALICALFGHFLINAPSILASLRAL--ILA 59 Query: 68 SATQRKLEDISHIVFL---LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A D V L LT + A R++ P +L+ + G+ + +Q VL +K Sbjct: 60 PAA---FADQGFAVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLK 116 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PS ++++ +K I+S NL+ F+KS KI+ + ++T+ + ++ L + A PHS Sbjct: 117 PSAEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDS----LQPLMAVPHSG 172 Query: 185 LYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L V ++L +++ L +++ D+ W +Q+ L+MSK E+K E K+ G+P Sbjct: 173 LDGLRTGVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK ++K + + I H RAT+++TNPTH A+AL Y E P ++A GQ +A Sbjct: 233 HIKQQRKHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 M + A + +P+ + +LAR+L Q ++ IP + VA ++ + Sbjct: 293 ALMVEAARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAV 341 >gi|327394193|dbj|BAK11615.1| flagellar biosynthetic protein FlhB [Pantoea ananatis AJ13355] Length = 346 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 134/235 (57%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V++ +K F +++ G+KR+++ K +K ILVG + + ++ ML Sbjct: 78 VISGKSIKVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVGCVAGWYVWSHWPDMLRL 137 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 I+ +P + L H + +++L + + D+ W + + KL+MS+QEI+DE KQ Sbjct: 138 IAESPTTALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHFKKLRMSRQEIRDEHKQQ 197 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG Sbjct: 198 EGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIAKGA 257 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA ++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 258 GDIALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYGAVAEVLAWVWQ 312 >gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-63q42] Length = 516 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 185/345 (53%), Gaps = 1/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + KK + +GN SRE + ++LA + + FS + ++ S L+ L+ Sbjct: 165 DKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 224 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + S++ L+ + ++ +P + F++ GI + L Q + +KP+ Sbjct: 225 DFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKPNLS 283 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ G K ++S+ +L +K I ++ I +NY +L + +++Y Sbjct: 284 KLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 343 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V +L I + + + V D + + +L+M+KQE+KDE K S G+P +K + K Sbjct: 344 KDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAKIKQ 403 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA Sbjct: 404 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 463 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 464 GNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 508 >gi|167564493|ref|ZP_02357409.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis EO147] Length = 400 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 108/368 (29%), Positives = 183/368 (49%), Gaps = 32/368 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI----- 55 M+E D+ +TEA + K+ E A EG SRE + F+ +L+ Y + S I Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWLLSGPISEHLR 58 Query: 56 ----------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105 + D H +L+ A LE + + LL ++A L P Sbjct: 59 TMLHAAFSFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAA--LAAP-------M 109 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 +G +L+ + + F+R++ G+ RI+SI + S K ++VG I + Sbjct: 110 ALGGWLV------STKTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAA 163 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + + +L + H+ L A V M + + + LD+ + Q+ KL+M+ Sbjct: 164 IWRSKDELLGLATQPLHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMT 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E+K E +++ G+P +K R + R+ R +MM A +++TNPTH+A+AL+Y E Sbjct: 224 KEEVKREHRENEGDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGE 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG NL+A ++R +A EH++P+ E P LAR+L+ V + IP Y AVA++ Sbjct: 284 MRAPKVVAKGVNLVAGRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEV 343 Query: 346 IYKIYHKK 353 + +Y K Sbjct: 344 LAWVYQMK 351 >gi|225375342|ref|ZP_03752563.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM 16841] gi|225212831|gb|EEG95185.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM 16841] Length = 367 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 103/362 (28%), Positives = 193/362 (53%), Gaps = 24/362 (6%) Query: 5 DAPDN-KTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLF--FFSPGIYSVTS 60 D P KTE ++KK+ +A +G S+E + F I+ L+ +F F + + Sbjct: 11 DGPGGEKTEPATAKKLREAREDGKVVKSKELTAAFDLIILFLVLKIFVSFVGNRLMNSFV 70 Query: 61 DLHVLLASATQRKLEDISH--IVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPV 117 D++ + + D++ + L++ + + +P F FG + + LI I V Sbjct: 71 DIYGRIPDIVRENAVDVTEKSVAALMSDALIQILIVCVP----FFAFGFVVTALISVIQV 126 Query: 118 ---LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYF 171 + ++P F + + G KRI+S +++ +KS +KI ++ + S+ ++ F Sbjct: 127 GWKVTGKPLQPKFDKFNPINGFKRIFSKDSIFELVKSILKIFVIVYVAYTSIRGHAQDIF 186 Query: 172 TMLDFISANP--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + + P +I+ + L + L+++ + + D + +++ +KM+KQE+ Sbjct: 187 ILYEI----PLMQAIMLCGTVIINAGLKISLVYL-VIGLADFIYQKYRFNEDMKMTKQEV 241 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 KDE K + GNP IK RQ+ R R +MM+ +A ++ITNPTH+A+A++Y + AP Sbjct: 242 KDEFKNTEGNPEIKGRQRQRMREASRRRMMQDVPKADVVITNPTHFAVAIKYDAETSKAP 301 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V++AKG++ +A+K+++ A EH+I I E LAR L+ V I IPP Y+AVA+++ + Sbjct: 302 VVLAKGEDYLAQKIKEAAREHHIEIVENKPLARMLYANVDIGQEIPPELYQAVAEILAMV 361 Query: 350 YH 351 Y+ Sbjct: 362 YN 363 >gi|163781850|ref|ZP_02176850.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1] gi|159883070|gb|EDP76574.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 91/270 (33%), Positives = 153/270 (56%), Gaps = 12/270 (4%) Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 S +L++P ++ ++ IG+++ Q + L ++ ++R++ EGIK++ SI L Sbjct: 83 SIVKLLVPFFVVTILVVIGAHVAQFGFIFTLKPLQFKWERLNPVEGIKKMVSITTLFELS 142 Query: 150 KSFVKIILVGTII------TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 K+ +K L+ I ++SL N M N L V +L +I I Sbjct: 143 KNTLKASLLFGIALFILKGSVSLILNSAQMPLLEGVN---FLIDLLIKVVLILGVIAFLI 199 Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATS 263 A L W Y + +++MSKQE+K+E KQ G P +K + K+ R R +MM Sbjct: 200 ALLDFAYKKWDYER---RIRMSKQEVKEEFKQLEGQPEVKAKVKARMREMARGRMMAEVP 256 Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323 +A+++ITNPTHYA+ALRY ++ APV+VAKG+ +A+++ K+A E+ +P+ +P LAR+ Sbjct: 257 KASVVITNPTHYAIALRYDAEKDRAPVVVAKGKGTLAERIIKVAEENEVPVIRKPELARA 316 Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ V + IPP FY+AVA++I I +K Sbjct: 317 MYSAVDVGDEIPPEFYRAVAEIIAFITFRK 346 >gi|332294884|ref|YP_004436807.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense DSM 14796] gi|332177987|gb|AEE13676.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense DSM 14796] Length = 349 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 16/350 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 ++TE + ++ +A G S+E S I L FF G + +V Sbjct: 7 DRTEPATDRRRREARKMGQVAKSQELSSILVFFGSYIVLQFFLVIGF---NNWFNVWKGF 63 Query: 69 ATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + L+ ++ + F++ L L+ IP ++ + + S ++Q V+ + P F Sbjct: 64 FSFDSLDLNLHYHNFIMAFLLLT-----IPPVVGALFMALFSNILQVGFVITPQVLIPKF 118 Query: 128 KRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + + + KR+ S LV+ +K +KI+++ I+T SL E + +L+ + H Sbjct: 119 SNLDITKYFKRLLSFRGLVDQVLKPTIKILILAYILTSSLLEAFPEILNLSFIDVHKGFQ 178 Query: 187 HAFFTVRKVLI---MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 V +L+ ++L F A + L W Y + ++MSKQE+K+E K + G+P+IK Sbjct: 179 IVIKIVTSILVKTMVVLFFFALIDYLFQRWQYEK---SIRMSKQELKEEFKTTEGDPLIK 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R K + R +MM+ +A +IITNPTH A+A+ Y + AP +VAKG ++A+K+ Sbjct: 236 ARIKRLQSEMARRRMMQEVPKADVIITNPTHVAVAIFYDPEKFKAPKVVAKGMGIVAEKI 295 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA E+++P+ +LAR+LFK+V IN IP FYKAVA ++ +Y KK Sbjct: 296 IQIAKENDVPLVRNETLARALFKEVEINFEIPEKFYKAVASILATVYKKK 345 >gi|197120182|ref|YP_002140609.1| flagellar biosynthesis protein FlhB [Geobacter bemidjiensis Bem] gi|197089542|gb|ACH40813.1| flagellar biogenesis protein FlhB [Geobacter bemidjiensis Bem] Length = 353 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/355 (27%), Positives = 187/355 (52%), Gaps = 6/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SV 58 M++ D +KTE P+SKKIE+A N+ P SRE + S++ ++ L + S G++ ++ Sbjct: 1 MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTL--YASSGLFLRTM 57 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + + + +L + ++ A L P +L+ ++ GI + Q + Sbjct: 58 KTSMQEIFGGLARPELTYAAVHTLMIKEFGYLAIMLA-PFILVGIVVGIAVEVTQGGVTV 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + +K R++ +G+ R+++ +++ KSF+K+ +VG + LTE ++ + Sbjct: 117 SSEKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIVYLVD 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + I+ K+++ + L VLD+ + ++ LKM+KQE+KDE K G Sbjct: 177 QDLMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFMDNLKMTKQEVKDEHKNMEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK + K R +M + A +++TNPTHYA+AL+Y + + APV++ KG + Sbjct: 237 DPAIKGKMKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQ 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +++ A E+N+ + E LAR L+ QV IP + AVA+++ +Y K Sbjct: 297 MALQIKITARENNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351 >gi|225181592|ref|ZP_03735033.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1] gi|225167700|gb|EEG76510.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1] Length = 309 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 159/300 (53%), Gaps = 35/300 (11%) Query: 82 FLLTHLSLSA-------SRLVIPGLL-LFMMFGIGSYLIQRIPV--------LNLNHVK- 124 FL HL+ + RL+ PG L M G + + PV L +N+++ Sbjct: 11 FLFNHLAQTMLRFLQMDGRLLTPGNLNALTMRAFGDFFLFMAPVFAVSLIAGLAVNYLQV 70 Query: 125 ----------PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P F R++ EG K+I S L KS +K+++VG + + + N +L Sbjct: 71 GFLFTTEPLNPQFNRLNPAEGFKKIASKRALFELAKSLLKVLMVGFVAFLFVRGNLENLL 130 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIK 230 + + + + T+R + + + L I L +VLD + ++ LKMSKQEIK Sbjct: 131 ATLYQDAAGV----WETLRSLSLNLALRIGALFLVLSVLDYIYQRYEHNQNLKMSKQEIK 186 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 +E KQ G+P +K++ + RS +MM+ AT++ITNPT A+A+RY + ++AP Sbjct: 187 EEHKQMEGDPQLKSQLRERQRSIATQRMMQDVPEATVVITNPTELAVAIRYREDRDEAPT 246 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG L+AK++R+ A E+N+PI E +AR L+ QV I IP Y+AVA+++ +Y Sbjct: 247 VVAKGAALMAKRIRETAKENNVPIMENKPVARMLYDQVEIGQEIPVDLYQAVAEILALVY 306 >gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile 630] gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile] Length = 604 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 185/345 (53%), Gaps = 1/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + KK + +GN SRE + ++LA + + FS + ++ S L+ L+ Sbjct: 253 DKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 312 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + S++ L+ + ++ +P + F++ GI + L Q + +KP+ Sbjct: 313 DFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKPNLS 371 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ G K ++S+ +L +K I ++ I +NY +L + +++Y Sbjct: 372 KLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 431 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V +L I + + + V D + + +L+M+KQE+KDE K S G+P +K + K Sbjct: 432 KDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAKIKQ 491 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA Sbjct: 492 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 551 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 552 GNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596 >gi|157961202|ref|YP_001501236.1| flagellar biosynthesis protein FlhB [Shewanella pealeana ATCC 700345] gi|157846202|gb|ABV86701.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC 700345] Length = 377 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/362 (28%), Positives = 185/362 (51%), Gaps = 23/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE +S+K++ A ++G S++ + ++A + LL P I Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLLMT-GPNIAQAMF 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF-----GIGSYLIQRI 115 ++ + + ++ ++ D + ++ + S L P LL F++F G+ + I Sbjct: 60 NIMNKMYTLSRDEIFDTNQ---MMNVWGVVGSELAFP-LLGFIVFLALIAFAGNIALGGI 115 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYF 171 +++ P ++S G KR++ + +V K K +V +++I L + Sbjct: 116 S-FSVSAFMPKASKMSPVAGFKRMFGVQAVVELAKGIAKFSVVAITAYLLLSIYLNDILL 174 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEI 229 + + N +YHA + V I ILL +TL ++ I + W +LKM+KQEI Sbjct: 175 LSQEHLPGN----IYHALDLI--VWIFILLCASTLLIVMIDVPFQIWNHAKQLKMTKQEI 228 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 KDE K + G P +K R + + R + +MM A +I+ NP HYA+A++Y + AP Sbjct: 229 KDEYKDTEGKPEVKGRIRQLQREMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAGRSTAP 288 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +VAKG + +A K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ + Sbjct: 289 FVVAKGVDEVAFKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYV 348 Query: 350 YH 351 + Sbjct: 349 FQ 350 >gi|167571643|ref|ZP_02364517.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis C6786] Length = 400 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/368 (29%), Positives = 183/368 (49%), Gaps = 32/368 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI----- 55 M+E D+ +TEA + K+ E A EG SRE + F+ +L+ Y + S I Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWLLSGPISEHLR 58 Query: 56 ----------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105 + D H +L+ A LE + + LL ++A L P Sbjct: 59 TMLHAAFSFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAA--LAAP-------M 109 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 +G +L+ + + F+R++ G+ RI+SI + S K ++VG I + Sbjct: 110 ALGGWLV------STKTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAA 163 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + + +L + H+ L A V M + + + LD+ + Q+ KL+M+ Sbjct: 164 IWRSKDELLGLATQPLHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMT 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E+K E +++ G+P +K R + R+ R +MM A +++TNPTH+A+AL+Y E Sbjct: 224 KEEVKREHRENEGDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGE 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG NL+A ++R +A EH++P+ E P LAR+L+ V + IP Y AVA++ Sbjct: 284 MRAPKVVAKGVNLVAGRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEV 343 Query: 346 IYKIYHKK 353 + +Y K Sbjct: 344 LAWVYQLK 351 >gi|260776470|ref|ZP_05885365.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] gi|260607693|gb|EEX33958.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] Length = 376 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 195/361 (54%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + +Y+ Sbjct: 1 MAESDG-QERTEDATPRRLQQAREKGQVARSKELASVSVLVIGAIALMWFGESLARALYT 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 V L L ++ ++ D+ + + L + L++ ++LF+ IG+ I I Sbjct: 60 VMGRLFDL----SRDEIFDLPKLFDIALGSMGSLLGPLLLILVVLFIAALIGAAGIGGIS 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173 ++ P + +++ G+KR+ + + V +KS +K+ LV + + + E+ F + Sbjct: 116 -FSVEAAMPKWSKMNPLSGLKRMVGLQSWVELLKSILKVTLVSGVAFYLIDAAQEDLFQL 174 Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +D N ++HA + +++I + + +DI + Q ++LKM+KQE+KDE Sbjct: 175 SMDVYPQN----IFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K++ G P +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++V Sbjct: 231 YKETEGKPEVKGRIRMLQREAAQRRMMSEVPQADVIVTNPEHFSVALRYKQDTDKAPIVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ Sbjct: 291 AKGTDHMALKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|303326438|ref|ZP_07356881.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3] gi|302864354|gb|EFL87285.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3] Length = 359 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 179/349 (51%), Gaps = 8/349 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 ++TE + K+ EGN P S+E S+ LI L + P + + L Sbjct: 9 SRTEEATPKRRNKQRQEGNVPKSQELGKAVSLTGGLIALHLWLGPMTEEIKTLFRRFLGH 68 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP--- 125 A + + ++ L L++ ++++P + + G ++L QR+ V L K Sbjct: 69 AWEFD-PNPQNVYTLSIDLTVELCKIILP---ILLFLGFLAFLAQRLQVGKLWTTKVFKF 124 Query: 126 SFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 ++R ++ +G+K++ +S + +KS + I++ I + + Y L A P + Sbjct: 125 KWQRFNIIKGLKQMMFSPQTALRTIKSLLFSIILALIPGYLIYQEYQNFLPMYYATPEGV 184 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + K+ LL I + D+ S + +KM+K E+KDE KQ+ G+P+IK Sbjct: 185 AAYMLQMGLKLAYYALLPILAIAAFDVWQSRFAYKEGMKMTKDEVKDERKQAEGDPVIKG 244 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +Q+ + +MM+ +A +++TNPTH A+ALRY E APV++AKG + +A+K++ Sbjct: 245 QQRRKMMEVVMKRMMQDVPKADVVVTNPTHIAVALRYNAQEAPAPVVLAKGADHLAEKIK 304 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A EHN+PI E LAR+L+K V + +P YKAVA ++ I+ K Sbjct: 305 AVAREHNVPIRENVPLARALYKAVEVGDMVPEELYKAVATVLASIWKLK 353 >gi|146282913|ref|YP_001173066.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri A1501] gi|145571118|gb|ABP80224.1| flagellar biosynthetic protein FlhB [Pseudomonas stutzeri A1501] Length = 378 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 183/361 (50%), Gaps = 21/361 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +K+E P+ K++ ++ +G SRE S +A + + + Sbjct: 1 MAESESGADKSEEPTEKRLRESREKGQLARSRELS----TVAVTLGGIGGLLASGGGLAQ 56 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI------GSYL 111 L ++ ++ L D +V LL L A ++P L+ ++ I G +L Sbjct: 57 TLMAMMQGTFELSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWL 116 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + P R++ G+KR++S LV +K+ K ++V + + L+ Y Sbjct: 117 ------FSAKAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLS-AYQ 169 Query: 172 TMLDFISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 L I+ P + + H+ V + + + + +D+ + KL M+KQE+K Sbjct: 170 DDLLSIAKQPLDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVK 229 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE K S G P +K+R + + R + +MM+A A ++ITNPTH+A+AL+Y + AP Sbjct: 230 DEYKDSEGKPEVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPR 289 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 LVAKG + +A K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y Sbjct: 290 LVAKGGDFVALKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVY 349 Query: 351 H 351 Sbjct: 350 Q 350 >gi|259907600|ref|YP_002647956.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96] gi|224963222|emb|CAX54706.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96] gi|283477442|emb|CAY73358.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163] Length = 381 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/350 (27%), Positives = 179/350 (51%), Gaps = 7/350 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + KTEAP+ +I A EG P S+E +++L L+ G V S L Sbjct: 3 QESDNEKTEAPTPSRIAKAREEGQIPRSKE---LTTLLMLLVGWGLMLCSGGNLVRS-LQ 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LL +A + + D + ++ + L A + ++P + ++ + + + +L+ Sbjct: 59 SLLHNAMIFDRLLILDPAQMLQRSSSLLGQAFKAIMPFVFGLLLTAVSAPPLIGGLILSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K+++ GIKR++S +K+ +K++L + L N + I Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ G+P Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG L+A Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVY 348 >gi|159024053|gb|ABW87281.1| HrcU [Xanthomonas fuscans subsp. fuscans] Length = 357 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DA +G P+S + + + + L L S G Y + L+ Sbjct: 3 EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FADHMRALMT 58 Query: 68 SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 59 IGFDFPENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E+K+S G+P IK Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + A+P ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335 >gi|327481253|gb|AEA84563.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166] Length = 378 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 183/361 (50%), Gaps = 21/361 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +K+E P+ K++ ++ +G SRE S +A + + + Sbjct: 1 MAESESGADKSEEPTEKRLRESREKGQLARSRELS----TVAVTLGGIGGLLASGGGLAQ 56 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI------GSYL 111 L ++ ++ L D +V LL L A ++P L+ ++ I G +L Sbjct: 57 TLMAMMQGTFELSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWL 116 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + P R++ G+KR++S LV +K+ K ++V + + L+ Y Sbjct: 117 ------FSAKAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLS-AYQ 169 Query: 172 TMLDFISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 L I+ P + + H+ V + + + + +D+ + KL M+KQE+K Sbjct: 170 DDLLSIAKQPLDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVK 229 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE K S G P +K+R + + R + +MM+A A ++ITNPTH+A+AL+Y + AP Sbjct: 230 DEYKDSEGKPEVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPR 289 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 LVAKG + +A K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y Sbjct: 290 LVAKGGDFVALKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVY 349 Query: 351 H 351 Sbjct: 350 Q 350 >gi|320177760|gb|EFW52748.1| Flagellar biosynthesis protein FlhB [Shigella boydii ATCC 9905] Length = 383 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 186/349 (53%), Gaps = 29/349 (8%) Query: 19 IEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFSPGIY---SVTSDLHV 64 +E A EG P SRE + L + C+I+ L S G++ S+ +D ++ Sbjct: 18 LEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLSAGLHFDHSIINDPNL 77 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 +L E + ++ L++ + L A L+ P +L ++F S ++ Sbjct: 78 ILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS-------------LQ 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + Sbjct: 123 PKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITA 182 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K Sbjct: 183 MGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKG 242 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R Sbjct: 243 RIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIR 302 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 303 EIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|218887105|ref|YP_002436426.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758059|gb|ACL08958.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 356 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/364 (29%), Positives = 191/364 (52%), Gaps = 24/364 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +KTE + K+ A N+GN P S+E + +ILA + LL + I + Sbjct: 1 MAQRDP--SKTEKATPKRRNKARNKGNVPKSQELTKALTILAGSVGLLSY----IDFLAK 54 Query: 61 DLHVLLASATQRKLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 D+ L I +++ LL L+ + +++P ++LF+ G ++L+ R+ V Sbjct: 55 DMQTLFRHFLGNAFGFIPNQQNVIKLLMWLAGELAAMLLP-IMLFI--GFTAWLVLRLQV 111 Query: 118 LNLNHV---KPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 L K ++ R ++ +KR++ S + KS ++ + +G I + Sbjct: 112 GKLWTTEVFKFNWSRFNILAALKRMFVSPETFMRLGKSLLQALFIGVAPYIIIRREMHNF 171 Query: 174 LDFISANPHSI----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 L A+ I L + VR L+ + + IA WSY + LKM+K E Sbjct: 172 LPLYYADAQGISAYMLKTGWDMVRYALVPMFI-IAIADFWYTRWSYEE---NLKMTKDET 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 KDE KQ+ G+P+++ +Q+ + +M++ +A ++ITNPTH+A+ALRY TE AP Sbjct: 228 KDERKQAEGDPVVRAQQRRKMMQMMAKRMLQDVPKADVVITNPTHFAIALRYDATEAPAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +++AKG + +A+K++++A EH +PI E LA++L+K V + IP ++AVA ++ + Sbjct: 288 IVLAKGADNLAQKIKEVAREHGVPIRENKPLAQALYKAVEVGDMIPAELFQAVATVLASL 347 Query: 350 YHKK 353 + K Sbjct: 348 WKFK 351 >gi|167770199|ref|ZP_02442252.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM 17241] gi|167667521|gb|EDS11651.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM 17241] Length = 291 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 160/277 (57%), Gaps = 15/277 (5%) Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139 I F+L+ L L L+I GL++ + + Q + + P F R++ +GIK++ Sbjct: 22 IFFVLSALPL----LLICGLVVVI-----CTVAQTRGLFTMKAAAPKFGRMNPLQGIKKM 72 Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISANPHSILYHAFFTVRKVL 196 +S+ +V +KS VKII++G II SL E +F M +D + + + K Sbjct: 73 FSLRGVVELLKSIVKIIILGYIIYNSLGEQFFFMPRLMDMSLEQALAFTGNIILDIAKTA 132 Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 ++++F+A L W + + L+MSKQE+K+E KQ+ G+P +K + K + + R Sbjct: 133 AIVMVFVAGFDYLYQWWDFEK---NLRMSKQELKEEFKQTEGDPQVKGKIKERQQQQARQ 189 Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316 +MM+ A ++I NPTHYA+A++Y +N+APV++AKG + +A ++ K+A EH+I E Sbjct: 190 RMMQNVPNADVVIRNPTHYAVAIQYNPHQNNAPVVIAKGMDSLALRIVKVAQEHDIITME 249 Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR L++ V ++ IP FY+ VA+++ +Y+ K Sbjct: 250 NKPLARGLYETVDLDREIPEQFYQPVAEVLAFVYNLK 286 >gi|255523688|ref|ZP_05390654.1| type III secretion exporter [Clostridium carboxidivorans P7] gi|296186692|ref|ZP_06855094.1| putative flagellar biosynthetic protein FlhB [Clostridium carboxidivorans P7] gi|255512557|gb|EET88831.1| type III secretion exporter [Clostridium carboxidivorans P7] gi|296048729|gb|EFG88161.1| putative flagellar biosynthetic protein FlhB [Clostridium carboxidivorans P7] Length = 283 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 147/261 (56%), Gaps = 4/261 (1%) Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +P +L M G+ + +Q ++ +KP F +++ G KRI+S+ ++ K + Sbjct: 24 LPVVLPIMFMGVLANFLQTGALITSEPLKPDFSKLNPINGFKRIFSMRTVMELFKDLAMV 83 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 +VG + + +NY +L S N ++ + I + + + ++D + Sbjct: 84 SIVGFVGYKFVKDNYEYILTLGSLNAQAVAAAVSKLTINIFFRITILMIIIALIDYVYQR 143 Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275 Q+ LKMSKQE+K+E KQ G+P IK++ K R +MM+ +AT+++TNPTH Sbjct: 144 FQFNKDLKMSKQEVKEEYKQDEGDPQIKSKIKQKQREMATRRMMQEVPKATVVVTNPTHI 203 Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y Q +APV+ AKG + +A K+++IA E+++PI E LAR ++ +V ++ IP Sbjct: 204 AVALKY-QEGLNAPVVAAKGADRVALKIKEIAKENDVPIIENKPLARLMYSEVELDEEIP 262 Query: 336 PVFYKAVAQ---LIYKIYHKK 353 Y+AVA+ L+YKI +K Sbjct: 263 MDMYEAVAEILALVYKIKERK 283 >gi|332096673|gb|EGJ01664.1| flagellar biosynthetic protein FlhB [Shigella boydii 3594-74] Length = 343 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 140/237 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 75 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 134 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 135 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 194 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 195 EGDPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 254 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ I+ K Sbjct: 255 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 311 >gi|254292632|ref|YP_003058655.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814] gi|254041163|gb|ACT57958.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814] Length = 354 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/353 (27%), Positives = 185/353 (52%), Gaps = 16/353 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ KTE P+ K+++DA +G+ S++ ++ +LA + P S+ Sbjct: 1 MAEDQDDSQKTEEPTQKRLDDARKKGDIAKSQDVPVWFILLAGAALIAGA-QPLASSIGG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF---MMFGIGSYLIQRIPV 117 L +LL +L + L L+ P ++F ++F I +++Q +P+ Sbjct: 60 PLTMLLDHPHDFQLSGGGAQRLMTAILG----ELLGPMAIVFSIIIVFAISGHVVQHMPL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF- 176 +KP ++S G+KR++ +N K+ +K+I + ++ + ++ Sbjct: 116 WTAEKMKPKLSKLSPIGGLKRMFGPQGWMNLFKAILKLIAATVAVAFAVWPSRHELIKVG 175 Query: 177 ---ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 ISA P I A ++ + L+ + + +D + K++MS+++IK E Sbjct: 176 EMDISALPLMIQDKA----SRLFLAALIVVGFIAAIDYVFQKQSHAKKMRMSREDIKQEN 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQS G+P++K + ++ R R + +MM A AT+++TNPTHY++AL++ + AP+ VA Sbjct: 232 KQSDGDPMVKAKLAALRRQRSQGRMMAAVPEATVVVTNPTHYSIALKFDPEVDAAPICVA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG + +A ++R+IA E ++P+ E P LAR+LF + +P ++AVA++I Sbjct: 292 KGVDEVALRIREIAKESDVPLVESPPLARALFATAELEQVVPREHFEAVAKVI 344 >gi|269961633|ref|ZP_06175995.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3] gi|269833674|gb|EEZ87771.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3] Length = 376 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/360 (29%), Positives = 189/360 (52%), Gaps = 16/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + ++S Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 58 VTSDLHVLLASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + S L L KL DI+ ++ L + + LF+ IG+ + I Sbjct: 60 IMSRLFDLKRDEIFDTAKLFDIA-----FGAMTDLLFPLFLILITLFVAAMIGAAGVGGI 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + P +++ G+KR+ + + V +KS +K+ LV T + I L + L Sbjct: 115 S-FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALV-TGMAIYLIQASQADLI 172 Query: 176 FISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 +S + P +I +HA + +++I + + LDI + Q +LKM+KQEIKDE Sbjct: 173 QLSMDVYPQNI-FHALDILLNFILLISCSLLIVVALDIPFQIWQHADQLKMTKQEIKDEY 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G P +K R + + R + +MM +A +IITNP H+++ALRY Q + APV++A Sbjct: 232 KETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 292 KGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|224370771|ref|YP_002604935.1| FlhB2 [Desulfobacterium autotrophicum HRM2] gi|223693488|gb|ACN16771.1| FlhB2 [Desulfobacterium autotrophicum HRM2] Length = 357 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 117/367 (31%), Positives = 189/367 (51%), Gaps = 28/367 (7%) Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGI 55 M+E+ KTE SSKK+E A EG S E L + +LA + F + I Sbjct: 1 MAEDPGGGGEKTEGASSKKLEKAREEGQVAKSTEVPSVVVLLAGVLALNAFAFFIYQRLI 60 Query: 56 YSVTSDLHVLLASATQRKLED---ISHIVFLLTHLSLSASRL-VIPGLLLFMMF--GIGS 109 + L S T L + + H++F+ T RL +I G LL +F + S Sbjct: 61 LVLQDGL-----SFTGIPLSNDVAVVHLLFVATQ------RLFIILGPLLLAVFVAALVS 109 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGT--IITISL 166 + Q VL+ V P F R+ +G + +S L+ F+KS +KI I+ G ++ S Sbjct: 110 NIFQVGFVLSWKAVAPKFSRIDPIKGFAQKFSSRALMEFLKSILKIAIIFGVTYMVVKSE 169 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 EN + D A +IL + ++ I ++L +A L +D + ++ KM+K Sbjct: 170 VENIIRLYDHGVA---AILLYVLKVSLEIFIKVILVMAVLAAIDFAFQRWKFMEDQKMTK 226 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE KQ+ G+P +K R + + + R +MM A +++TNPT A+A+RY Sbjct: 227 QEVKDEHKQAEGDPQVKARIRQLQATAARKRMMSDVPEADVVVTNPTRLAIAIRYDGMTM 286 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP +VAKG +A +R+IA E N+P+ E +LAR+L+K V + +P ++AVA+L+ Sbjct: 287 NAPTIVAKGAGAVAANIRRIAEESNVPLVENKALARNLYKIVEVGQEVPTEEFQAVAELL 346 Query: 347 YKIYHKK 353 ++Y K Sbjct: 347 AQVYKLK 353 >gi|269792925|ref|YP_003317829.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100560|gb|ACZ19547.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio acidaminovorans DSM 6589] Length = 366 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/367 (27%), Positives = 181/367 (49%), Gaps = 46/367 (12%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLH 63 + KTE + +K A EG S++ + + S +L L++ FFF L Sbjct: 15 EEKTEPATPRKRRKAREEGQVTKSQDLTAAVVIASGLLGVLVFGGFFFR--------RLQ 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP------- 116 +L A ++ L S+ LLL +GSYL+ P Sbjct: 67 LLFA-----------QVMGYLKDPSMGGEEW----LLLPFSRALGSYLLIWFPLGLACAL 111 Query: 117 ------------VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 ++ + P+ R++ G+K+++S + V +K +K +++ ++ Sbjct: 112 AALGLMAYQVGLMITPKPLVPNLNRMNPVSGMKKMFSGRSFVEMLKGVLKALILLLMLYG 171 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 +L ++ T+L I L + V + + + L + L + D + ++ ++M Sbjct: 172 ALRKDLLTLLGAIGQPFGEGLGLVMWRVWVLCMKMTLMLMVLGLFDYAYQRWEFERSIRM 231 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 SKQEIK+E KQ G+P++K R + R R +MM +A ++ITNPTH A+AL Y + Sbjct: 232 SKQEIKEEYKQMEGDPLVKRRIRQRQRELARRRMMSDVPKADVVITNPTHVAVALSYDRK 291 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 +APV++AKG+ LIA+++R+IA E+ +P+ + P LAR+++ QV + IP YKAVA+ Sbjct: 292 VAEAPVVLAKGKGLIAQRIREIARENRVPVVQNPPLARAIYAQVEVGEEIPESLYKAVAE 351 Query: 345 LIYKIYH 351 ++ +Y Sbjct: 352 VLAFVYR 358 >gi|83749403|ref|ZP_00946397.1| Probable transmembrane flagellar biosynthetic protein (flhB) [Ralstonia solanacearum UW551] gi|207738850|ref|YP_002257243.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum IPO1609] gi|83723930|gb|EAP71114.1| Probable transmembrane flagellar biosynthetic protein (flhB) [Ralstonia solanacearum UW551] gi|206592220|emb|CAQ59126.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum IPO1609] Length = 387 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 180/358 (50%), Gaps = 32/358 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S++++E A EG+ P SRE + ++L S G V + V AS Sbjct: 8 EKTEPASARRLEQAREEGDVPQSRE---------LVSFVLLTVSAGGLWVMGESIVRAAS 58 Query: 69 A-TQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVLNLN 121 A R LE D + ++ L V+ GL+L + + L ++ Sbjct: 59 AFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLALAALAPLALTRGAISFK 118 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML----DFI 177 + P R+ G+KR++S+ L+ + K++LVG + ++ +L DF+ Sbjct: 119 PLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGV-------GWWLILHYRDDFV 171 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEI 233 P L V + L +A + +L D+ + Q+ K +M+K+E++ E Sbjct: 172 EL-PRQDLVTGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 ++S G+P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++A Sbjct: 231 RESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG +++A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y Sbjct: 291 KGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQ 348 >gi|330815159|ref|YP_004358864.1| FlhB [Burkholderia gladioli BSR3] gi|327367552|gb|AEA58908.1| FlhB [Burkholderia gladioli BSR3] Length = 404 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/365 (28%), Positives = 179/365 (49%), Gaps = 31/365 (8%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 D+ KTE + ++ E A EG SRE S F+ +LA Y + S I Sbjct: 3 EDSDLEKTEEATPRRREKAREEGQVARSRELSSFA-LLAAGFYGAWMLSGPIGEHLRTML 61 Query: 56 -------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108 + D H +L A + +E +S + +L L+A +G Sbjct: 62 RGSLGFDRAAAFDTHAMLTGAGRAGMEGLSALAPVLALTGLAAL---------AAPIALG 112 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 +L L+ + F R++ G+ RI+S+ L+ + K ++VG I I++ + Sbjct: 113 GWL------LSGKAIGFKFDRLNPISGLGRIFSLQGLIQLGMALAKTVVVGGIGGIAIWK 166 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + +L + H L V + + + + +D+ + Q+ KL+M+K+E Sbjct: 167 SREELLGLMMLPLHQALADTLHLVAVCCGVTVAGMLVVAGMDVPYQLWQYNKKLRMTKEE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +K E +++ G+P +K R + R+ R +MM +A +++TNPTH+A+ALRY E A Sbjct: 227 VKREHRENEGDPHVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P +VAKG NL+A ++R++A EH +PI E P LAR+L+ V + IP Y AVA+++ Sbjct: 287 PKVVAKGINLVAARIRELAEEHRVPILEAPPLARALYHNVELEREIPGPLYSAVAEVLAW 346 Query: 349 IYHKK 353 +Y K Sbjct: 347 VYQLK 351 >gi|288942622|ref|YP_003444862.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM 180] gi|288897994|gb|ADC63830.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM 180] Length = 384 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 181/353 (51%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ ++EAP++K++ ++ +G SRE + F ++ +LLF G+ + S Sbjct: 1 MAENENGQERSEAPTAKRLRESREKGQVARSRELNTFIILIVGGAFLLFLGG-GMAARIS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVL 118 L + + + + D +V L HL A ++ P GLL+ + +G L+ + Sbjct: 60 QLMIDGWTLERGLIFDEGLLVPHLQHLLGRALLILAPLFGLLMVIAL-MGPILVGGLN-F 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P F +V+ G+KR++S+ L+ +K K LVG + T+++ + +L Sbjct: 118 STQALMPKFSKVNPISGLKRVFSVQGLMELVKGLGKFGLVGIVATLAIMSIWGNLLTLGE 177 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + ++ + + +D+ + +L+M+ QEIKDE K++ G Sbjct: 178 LPVEQAIVQTVHMAAWLFLIAAAALLVVAAIDVPFQVWNHQKQLRMTLQEIKDEFKETEG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 P +K R + + + +MM +A ++ITNPTHYA+A+ Y+ AP L+AKG + Sbjct: 238 KPEVKGRIRQLQHEMSQRRMMSEVPKADVVITNPTHYAVAISYVPAIMPAPRLLAKGTDA 297 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A+ +R +A EH I E P +AR+++ +N IP + AVA+++ +Y Sbjct: 298 VAQAIRALAEEHRIVRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQ 350 >gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-66c26] gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CIP 107932] gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-76w55] gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-97b34] gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-37x79] gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CD196] gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile R20291] gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-32g58] gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196] gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291] Length = 604 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 184/345 (53%), Gaps = 1/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + KK + +GN S+E + ++LA + + FS + ++ S L+ L+ Sbjct: 253 DKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 312 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + S I L+ + ++ +P + F++ GI + L Q + +KP+ Sbjct: 313 DFYMNI-NYSSIEKLVIAGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKPNLS 371 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ G K ++S+ +L +K I ++ I +NY +L + +++Y Sbjct: 372 KLNPVSGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 431 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V +L I + + + V D + + +L+M+KQE+KDE K S G+P IK + K Sbjct: 432 KDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAKIKQ 491 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA Sbjct: 492 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 551 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 552 GNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596 >gi|239817109|ref|YP_002946019.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110] gi|239803686|gb|ACS20753.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110] Length = 382 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 179/355 (50%), Gaps = 21/355 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE S +++E A +G+ SRE + F LL G++ L L Sbjct: 8 EKTEPASPQRLEKAREQGDVARSRELATF--------VLLGTAVAGLWLTADSLGATLRG 59 Query: 69 ATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 A + L D SH++ + A ++P + ++ + + L+ +L+ Sbjct: 60 ALAQGLHFDRAAAFDPSHMLARAGLMGQQALLALVPLFGMMLVAAVAAPLMLGGWLLSAK 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + P F ++ G+ R++S L K+ K +L+G + + + +N + ++ + Sbjct: 120 ALAPKFSKLDPVAGVGRMFSAQALSELFKALAKSLLIGGVAWLVIMDNVDEVSALMAQSE 179 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSKQEIKDEIKQSYG 238 + L V +I + + ++D+ WSYH+ KL+MS+++++ E K+S G Sbjct: 180 RAALPQMIVLVAHNCALIASALFLVALVDVPYQLWSYHR---KLRMSREDLRQEHKESEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK + + + R +MM +A I++TNPTH+A+AL+Y+ + AP +VAKG +L Sbjct: 237 DPHIKAQIRRQQQQMARRRMMSEVPKADIVVTNPTHFAVALKYVDHDMRAPRVVAKGSDL 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R+IA E+N+ I E P L R+LFK + IP Y AVA+++ +Y K Sbjct: 297 MAARIREIARENNVAILEAPPLTRALFKHTRLGDEIPAGLYTAVAEVLAWVYQLK 351 >gi|157363487|ref|YP_001470254.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] gi|157314091|gb|ABV33190.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] Length = 376 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/345 (27%), Positives = 181/345 (52%), Gaps = 3/345 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P+ ++ A EG S E ++ + L + + F F I + + + Sbjct: 32 ADPEKTEKPTPRRRRKAREEGQVATSNELNMAVTFLVAVFVMRFIFQRLIMFLENGSILF 91 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L ++S ++ ++ L+ L++ ++F G+ +Q +L+ +K Sbjct: 92 FSLEENDFLNNLSGRIYQSFKDTIFLLVLLFLSLIISVIFA-GA--MQTKFLLSFKPLKM 148 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 KR++ EG KR +S+ +L +KS +K+++VG + + N+ + L Sbjct: 149 DLKRINPVEGFKRFFSMRSLFELLKSILKMVIVGFVAYSVIRSNWILFRFYSDMETVDSL 208 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F +V++ + + L ++D + ++ ++M+KQEIK+E ++ G+P ++ R Sbjct: 209 KLIFNLTYEVMLKCAIALFILAIVDYFYQRWEFEKSIRMTKQEIKEEYREIEGSPEVRRR 268 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ I R +M++ A ++ITNP+H A+A+ Y E +APV++AKG + IA+K+ + Sbjct: 269 QREIMARLARGRMLQQVPEADVVITNPSHIAVAIEYKSEEMEAPVVLAKGADEIAQKIIQ 328 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 IA E+NIP+ P +AR L+K I IPP Y+AVA+++ +Y Sbjct: 329 IAKENNIPVVRNPQVARELYKTTDIGEQIPPNMYRAVAEILAYVY 373 >gi|313497812|gb|ADR59178.1| FlhB [Pseudomonas putida BIRD-1] Length = 380 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 180/369 (48%), Gaps = 36/369 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFS-----------------SILAC 43 M+E+++ +KTE P+ K+ DA +G S+E + + L Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60 Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103 L+ + F + I + L ++ + + + ++ LL +S V P L Sbjct: 61 LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISF-----VAPIALSGF 115 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 +F GS L +P F R++ GIKR++S+ L +K+ K ++ + Sbjct: 116 LFS-GSLL------------QPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAV 162 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + L+ + +L + + H+ V + + + + D+ + +Q + K+K Sbjct: 163 VVLSGDRQALLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMK 222 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI- 282 M+KQE++DE K S G P +K R + + R + +MM A A +IITNPTHYA+AL+Y Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDP 282 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + AP+L+AKG + +A K+R+I EHNI I E P+LAR+++ + IP Y AV Sbjct: 283 EKGGAAPLLLAKGSDFMALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAV 342 Query: 343 AQLIYKIYH 351 AQ++ ++ Sbjct: 343 AQVLAYVFQ 351 >gi|257876006|ref|ZP_05655659.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC20] gi|257810172|gb|EEV38992.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC20] Length = 355 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 181/358 (50%), Gaps = 30/358 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64 D KTE PS+K++ DA G P ++E + S+L ++ L FF+ S Sbjct: 5 DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLPYFSRSLA 64 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LA Q L D+ L L L P L+ + G+ + Q + + VK Sbjct: 65 QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAVK 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181 P FK+++ GIK+ +S+ +L+N K+ K G I+ Y F++A P Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLSKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170 Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 +IL+ +++ + I +F+ L V+D G+ + L MSKQE+K+E Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIVLAVVDYGYQRYSHRKNLMMSKQEVKEEF 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ G+P +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++A Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG + +A++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346 >gi|167034909|ref|YP_001670140.1| flagellar biosynthesis protein FlhB [Pseudomonas putida GB-1] gi|166861397|gb|ABY99804.1| flagellar biosynthetic protein FlhB [Pseudomonas putida GB-1] Length = 380 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 187/352 (53%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ S Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + +++ + FLL + A V P L+L + + + + + Sbjct: 61 MMRMNFSLTREVIVDERAMGAFLLASGKM-AIWAVQPVLILLFVISFVAPIALSGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S+N+L +K+ K ++ + + L+ + +L + Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNSLTELLKALAKFFVILIVAVVVLSNDRQALLSIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + D+ + +Q + K+KM+KQE++DE K S G P Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLI 299 +K R + + R + +MM A +A +IITNPTHYA+AL+Y + AP+L+AKG + + Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A K+R+I EH I I E P+LAR+++ + IP Y AVAQ++ ++ Sbjct: 300 ALKIREIGVEHKIQILESPALARAIYYSTEVEQEIPAGLYLAVAQVLAYVFQ 351 >gi|22127347|ref|NP_670770.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10] gi|45442777|ref|NP_994316.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108809078|ref|YP_652994.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua] gi|108810729|ref|YP_646496.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516] gi|145597798|ref|YP_001161874.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F] gi|150260268|ref|ZP_01916996.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162420905|ref|YP_001604864.1| flagellar biosynthesis protein FlhB [Yersinia pestis Angola] gi|165925101|ref|ZP_02220933.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165939028|ref|ZP_02227580.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|166009039|ref|ZP_02229937.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212135|ref|ZP_02238170.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|167398548|ref|ZP_02304072.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418875|ref|ZP_02310628.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425116|ref|ZP_02316869.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466360|ref|ZP_02331064.1| flagellar biosynthetic protein FlhB [Yersinia pestis FV-1] gi|218927893|ref|YP_002345768.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92] gi|229837389|ref|ZP_04457552.1| lateral flagellar export and assembly protein [Yersinia pestis Pestoides A] gi|229840602|ref|ZP_04460761.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842847|ref|ZP_04462999.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900926|ref|ZP_04516050.1| lateral flagellar export and assembly protein [Yersinia pestis Nepal516] gi|294502771|ref|YP_003566833.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21960430|gb|AAM87021.1|AE013950_6 putative flagellar biosynthetic protein [Yersinia pestis KIM 10] gi|45437643|gb|AAS63193.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108774377|gb|ABG16896.1| flagellar assembly protein [Yersinia pestis Nepal516] gi|108780991|gb|ABG15049.1| putative flagellar assembly protein [Yersinia pestis Antiqua] gi|115346504|emb|CAL19380.1| putative flagellar assembly protein [Yersinia pestis CO92] gi|145209494|gb|ABP38901.1| flagellar assembly protein [Yersinia pestis Pestoides F] gi|149289676|gb|EDM39753.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162353720|gb|ABX87668.1| flagellar biosynthetic protein FlhB [Yersinia pestis Angola] gi|165912984|gb|EDR31609.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|165923301|gb|EDR40452.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165992378|gb|EDR44679.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166206881|gb|EDR51361.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962869|gb|EDR58890.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051052|gb|EDR62460.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055879|gb|EDR65660.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682265|gb|EEO78357.1| lateral flagellar export and assembly protein [Yersinia pestis Nepal516] gi|229690114|gb|EEO82171.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696968|gb|EEO87015.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705512|gb|EEO91522.1| lateral flagellar export and assembly protein [Yersinia pestis Pestoides A] gi|262360803|gb|ACY57524.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262364748|gb|ACY61305.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|294353230|gb|ADE63571.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|320016730|gb|ADW00302.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 377 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 179/345 (51%), Gaps = 7/345 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +++ K+E P++ K+ A +G+ P S++ ++ + ++ I LL F P ++ S Sbjct: 2 SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKALVSQSF 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 V +A + + + FLL +L + A L L+ +F + + LI N V Sbjct: 61 VSVAQLASQLDDQGALEQFLLANLFIFAKFLAT--LIPIPLFSMLATLIPG--GWNFTPV 116 Query: 124 K--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 K P K++S GIKRI+S +N +K K +V + + + + +L + Sbjct: 117 KLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPL 176 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + F +L+ + + +DI S+H + K+KM+KQE+K E K + GNP Sbjct: 177 EEAITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPE 236 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK+R + + R ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA Sbjct: 237 IKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIAL 296 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R IA +H I I E P LAR+++ +N IP Y+A+AQ++ Sbjct: 297 YIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVL 341 >gi|258404720|ref|YP_003197462.1| flagellar biosynthesis protein FlhB [Desulfohalobium retbaense DSM 5692] gi|257796947|gb|ACV67884.1| flagellar biosynthetic protein FlhB [Desulfohalobium retbaense DSM 5692] Length = 354 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 137/231 (59%), Gaps = 1/231 (0%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P K++ +G + S + + +KS K+ +VG++ +L++++ + I Sbjct: 121 LQPDIKKLDPIQGAAKFVSKRSAMELLKSLAKVAVVGSVAYWTLSDHFEQAIQLIGQPIE 180 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I +T ++L+ + + + V+D ++ + ++KM+K+E++DE K++ G+P + Sbjct: 181 RIFVFIGWTAAEILLKCCIALLFIAVIDFAYTKWEMEEQMKMTKKELQDEHKETEGDPQL 240 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R +SI R R +MM +A ++ITNPTHYA+ALRY ++ +AP + AKG N++A++ Sbjct: 241 KQRMRSIQRDMARKRMMAEVPQADVVITNPTHYAVALRYDRSSMEAPEVTAKGSNIVAQR 300 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+IA E +P+ E P +AR L + + +P YKAVA+++ +Y K Sbjct: 301 IREIAEESGVPLVENPPVARVLHG-LELGETVPESMYKAVAEILAYVYSLK 350 >gi|226944866|ref|YP_002799939.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] gi|226719793|gb|ACO78964.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] Length = 402 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 112/373 (30%), Positives = 179/373 (47%), Gaps = 47/373 (12%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTEA S +++E A EG SRE + F +LA + ++S+ Sbjct: 17 MADESSDQEKTEAASPRRLEKAREEGQVARSRELTTFLLLLAGIAA--------LWSMGG 68 Query: 61 DLHVLLASATQRKLE-------DISHIVFLLTHLS-------------LSASRLVIPGLL 100 LH LA ++ L D + ++ L ++ LV P LL Sbjct: 69 LLHERLAEVMEQALLFERAQAFDSARMLARFWELGEGTLFTLLPLFLLMAVVALVAPSLL 128 Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 G L+ + ++P R++ +G+KR++S L K+ K ILVG Sbjct: 129 -------GGLLV------SAKALQPQLARLNPLKGLKRVFSTQALAELGKAVAKSILVGW 175 Query: 161 IITISLTENYFTMLDFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW- 218 I L Y L +S P L A + MI+L + + LD+ Y W Sbjct: 176 IAVFFLR-KYIDELMALSGMPIREALADAMRLMALASAMIVLGLILVVALDV--PYQLWS 232 Query: 219 -YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277 KL+MSK+E++ E K+S G+P +K R +S ++ R +MM A +I+TNPTHYA+ Sbjct: 233 HARKLRMSKEELRQEHKESEGDPHVKGRIRSQQQAMARSRMMSKVPTADVIVTNPTHYAV 292 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL Y + AP +VAKG + +A ++R++ EH +P+ E LAR+L+ V ++ IP Sbjct: 293 ALSYRDGQMGAPRVVAKGADALAARIRELGGEHAVPLLEAAPLARALYYHVDLDREIPVE 352 Query: 338 FYKAVAQLIYKIY 350 Y AVA+++ Y Sbjct: 353 LYTAVAEVLAWAY 365 >gi|229591837|ref|YP_002873956.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens SBW25] gi|229363703|emb|CAY51084.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens SBW25] Length = 378 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 179/360 (49%), Gaps = 19/360 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + ++++A LL + + Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGG----GLAL 56 Query: 61 DLHVLLA---SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYL 111 DL L+ + + L + + L H A V P L+ ++ +G +L Sbjct: 57 DLMELMKHNFALPREVLLNPDAMGQYLLHSGKIAILAVQPILITLLLAALIGPVALGGWL 116 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + P F R++ G+KR++S LV +K+ K IL+ + + L+ + Sbjct: 117 ------FAAGSMAPKFSRMNPGAGLKRMFSAKALVELLKALAKFILILFVALMVLSSDID 170 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 +L S + H+ V + + + + +D + + KL M+KQE++D Sbjct: 171 DLLRIAHEPLESAIIHSVQVVGWSALWMAAGLIIIAAVDAPIQLWESHKKLLMTKQEVRD 230 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G P +K R + + R + KMM + A +IITNPTHYA+AL+Y + AP+L Sbjct: 231 EHKDQEGRPEVKQRIRQLQREMSQRKMMASVPDADVIITNPTHYAVALKYDPEKGGAPML 290 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + A K+R+IA H+I + E P LARS+F ++ IP Y AVAQ++ +Y Sbjct: 291 LAKGSDFTALKIREIAVAHDILLLESPELARSIFYSTDLDQEIPAGLYLAVAQVLAYVYQ 350 >gi|26991041|ref|NP_746466.1| flagellar biosynthesis protein FlhB [Pseudomonas putida KT2440] gi|24986073|gb|AAN69930.1|AE016632_1 flagellar biosynthetic protein FlhB [Pseudomonas putida KT2440] Length = 380 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 180/369 (48%), Gaps = 36/369 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFS-----------------SILAC 43 M+E+++ +KTE P+ K+ DA +G S+E + + L Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60 Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103 L+ + F + I + L ++ + + + ++ LL +S V P L Sbjct: 61 LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVVSF-----VAPIALSGF 115 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 +F GS L +P F R++ GIKR++S+ L +K+ K ++ + Sbjct: 116 LFS-GSLL------------QPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAV 162 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + L+ + +L + + H+ V + + + + D+ + +Q + K+K Sbjct: 163 VVLSGDRQALLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMK 222 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI- 282 M+KQE++DE K S G P +K R + + R + +MM A A +IITNPTHYA+AL+Y Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDP 282 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + AP+L+AKG + +A K+R+I EHNI I E P+LAR+++ + IP Y AV Sbjct: 283 EKGGAAPLLLAKGSDFMALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAV 342 Query: 343 AQLIYKIYH 351 AQ++ ++ Sbjct: 343 AQVLAYVFQ 351 >gi|210134972|ref|YP_002301411.1| flagellar biosynthesis protein FlhB [Helicobacter pylori P12] gi|210132940|gb|ACJ07931.1| flagellar biosynthetic protein [Helicobacter pylori P12] Length = 358 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 112/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E +LA LI + FF I+ V S++ Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L+ L++P L++ M+ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L I++L +D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKSKALALISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALQF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L+K V +N+AIP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYKDVKLNAAIPEELFEAVA 336 >gi|261341518|ref|ZP_05969376.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] gi|288316316|gb|EFC55254.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] Length = 377 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 174/341 (51%), Gaps = 3/341 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +K+E P+++K+ A +G+ P S++ ++ +LA I + FF Y + Sbjct: 3 AGGDKSEKPTAQKLRKAREKGDLPRSKDLTMAVGLLASFITMGTFFP--YYKTLVEESFT 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 +L+D + L R +I L + I + L+ V ++ +KP Sbjct: 61 SVGMMAGRLDDQGALSQFLMLNVWVIIRFIIT-LAPIPLACIVASLVPGGWVFTVSKLKP 119 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK++S G+KR++S ++ V+ K +K ++ ++ + + +L + + Sbjct: 120 DFKKLSPISGVKRMFSSSHYVDVGKMMLKCGIILAVLYTMVHSSLNPLLHLQRLSLSQAI 179 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +H F + VL+ + I +LD+ + + K++M+KQE+K+E K + GNP IK R Sbjct: 180 HHGFGILHHVLVYFIAVIVIFALLDVPLAKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGR 239 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + R ++ A +IITNPTHYA+AL+Y + +AP +VAKG + IA +R Sbjct: 240 IRQLQRQMAMGQINRTVPEADVIITNPTHYAVALKYDPKKAEAPYIVAKGMDDIALHIRD 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A H I + E P LAR+++ +N IP ++A+A ++ Sbjct: 300 VARHHQIEVVEFPPLARAVYHTTRVNQQIPAQLFRAIAHVL 340 >gi|86146123|ref|ZP_01064449.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218708836|ref|YP_002416457.1| flagellar biosynthesis protein FlhB [Vibrio splendidus LGP32] gi|85836070|gb|EAQ54202.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218321855|emb|CAV17833.1| Flagellar biosynthetic protein flhB [Vibrio splendidus LGP32] Length = 376 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 184/354 (51%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE + K+++ A +G S+E + S ++ I L++F ++ Sbjct: 1 MAESDGQE-RTEDATPKRLQQAKEKGQVARSKELASASVLIVGAIALMWFGESMAKALFE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + + + + L L + + LF+ IG+ + I ++ Sbjct: 60 TMQRLFSLSREEVFDTTKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGIN-FSM 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFTMLDFISA 179 P +++ GIKR++ + + V +KS +K+ LV G I + + M + Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMEV 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P +I +HA + +++I + + +DI + Q +LKM+KQEIKDE K + G Sbjct: 179 YPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEHKDTEGK 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R + + R + +MM +A +I+TNP H+++ALRY Q ++ APV+VAKG + + Sbjct: 238 PEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPVVVAKGVDHM 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 298 AMKIREIARENDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351 >gi|153834147|ref|ZP_01986814.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] gi|148869517|gb|EDL68515.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] Length = 376 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/359 (28%), Positives = 192/359 (53%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + ++S Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + S L L T+ ++ D + + + ++ L + + LF+ IG+ + I Sbjct: 60 IMSRLFDL----TRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGIS 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + P +++ G+KR+ + + V +KS +K+ LV T + I L + L Sbjct: 116 -FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALV-TGMAIYLIQASQADLIQ 173 Query: 177 ISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S + P +I +HA + +++I + + +DI + Q +LKM+KQEIKDE K Sbjct: 174 LSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G P +K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AK Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 293 GTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|21241179|ref|NP_640761.1| type III secretion system protein HrcU [Xanthomonas axonopodis pv. citri str. 306] gi|21106486|gb|AAM35297.1| HrcU protein [Xanthomonas axonopodis pv. citri str. 306] Length = 357 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 167/340 (49%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DA +G P+S + + + + L+ + S G Y + + L+ Sbjct: 3 EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMK---SAGDY-FSDHMRALMT 58 Query: 68 SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 59 IGFDFPENTRDATAINRALGHIGIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E+K+S G+P IK Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + A+P ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335 >gi|325567516|ref|ZP_08144183.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus ATCC 12755] gi|325158949|gb|EGC71095.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus ATCC 12755] Length = 355 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 181/358 (50%), Gaps = 30/358 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64 D KTE PS+K++ DA G P ++E + S+L ++ L FF+ S Sbjct: 5 DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLPYFSQSLA 64 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LA Q L D+ L L L P L+ + G+ + Q + + +K Sbjct: 65 QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAIK 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181 P FK+++ GIK+ +S+ +L+N K+ K G I+ Y F++A P Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLGKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170 Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 +IL+ +++ + I +F+ L V+D G+ + L MSKQE+K+E Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEF 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ G+P +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++A Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG + +A++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346 >gi|95929867|ref|ZP_01312608.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM 684] gi|95134163|gb|EAT15821.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM 684] Length = 353 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 8/353 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ +TE +SK+ ED +G S+E + +++L+ + L +F+ +S S L Sbjct: 3 EESGQERTEEATSKRREDFRKKGQVAQSKEVNT-AALLSLSLLLWYFYGGSFWSQLSWLV 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + +V +L + + L+ P L+ ++ G + +Q + + Sbjct: 62 SHFWEQSGSLAVTPQSVVQILLFVLQKTAVLLSPLFLMVLVVGFFASFLQIGWLFTGKPL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P ++ +G R S +LV +KS K+ LVG + ++ + L + + Sbjct: 122 MPDLTKLDPIKGAGRFVSKRSLVELVKSLAKVALVGYVAYKTVYSEFDNALYLVDMDVIE 181 Query: 184 ILYHAFFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 LY+ VL+ I++ +A L + + W + K+KM+KQE K+E K+S G+P Sbjct: 182 TLYYVGRVAMAVLMKSCGIMILLALLDFMFVRWEMEE---KMKMTKQEQKEEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + +SI + R +MM +A ++ITNPTH ++A++Y Q E DAPV++AKG + +A Sbjct: 239 HLKAKVRSIQQQMARRRMMAEVPKADVVITNPTHLSVAIKYEQGEMDAPVIIAKGADNLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E+++P+ E +AR+L+K V + +P ++AVA+++ +Y K Sbjct: 299 MKIREIARENSVPLVENVDVARALYK-VEVGEVVPEQMFQAVAEILAYVYSLK 350 >gi|104782805|ref|YP_609303.1| flagellar biosynthesis protein FlhB [Pseudomonas entomophila L48] gi|95111792|emb|CAK16516.1| flagellar biosynthetic protein FlhB [Pseudomonas entomophila L48] Length = 380 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 184/357 (51%), Gaps = 12/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ + Sbjct: 1 MAESESGQDKTEEPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGQMAETLMT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM-----FGIGSYLIQRI 115 + + +++ S FLL ++ + +LLF++ +G +L Sbjct: 61 LMRANFTLTREVIVDERSMGAFLLASGKMAIWSVQPVMILLFVISFVAPIALGGFL---- 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + ++P F R++ GIKR++S++ L +K+ K +++ + + L + +L Sbjct: 117 --FSGSLLQPKFSRMNPLAGIKRMFSLHALTELLKAIAKFLVILVVALVVLASDRQALLS 174 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + + HA V + + + + D+ + Q + KLKM+KQE++DE K Sbjct: 175 IANEPLEQAVIHAVQVVGWSALWMAAGLLLIAAADVPFQLWQAHKKLKMTKQEVRDEYKD 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAK 294 S G P +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AK Sbjct: 235 SEGKPEVKQRIRQLQREASQRRMMAAVPEADVIITNPTHYAVALQYDPEKGGAAPLLLAK 294 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G + +A KMR+I EH + I E P+LAR+++ + IP Y AVAQ++ ++ Sbjct: 295 GTDFLALKMREIGVEHKVQILESPALARAIYYSTELEEEIPAGLYLAVAQVLAYVFQ 351 >gi|294665988|ref|ZP_06731251.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604236|gb|EFF47624.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 357 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DA +G P+S + + + + L L S G Y + + L+ Sbjct: 3 EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FSDHMRALMT 58 Query: 68 SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 59 IGFDFPENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K ++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 119 KFDSLNPATGVKNLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E+K+S G+P IK Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + A+P ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335 >gi|257866393|ref|ZP_05646046.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC30] gi|257873091|ref|ZP_05652744.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC10] gi|257800351|gb|EEV29379.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC30] gi|257807255|gb|EEV36077.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC10] Length = 355 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 181/358 (50%), Gaps = 30/358 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64 D KTE PS+K++ DA G P ++E + S+L ++ L FF+ S Sbjct: 5 DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLPYFSRSLA 64 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LA Q L D+ L L L P L+ + G+ + Q + + VK Sbjct: 65 QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAVK 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181 P FK+++ GIK+ +S+ +L+N K+ K G I+ Y F++A P Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLGKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170 Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 +IL+ +++ + I +F+ L V+D G+ + L MSKQE+K+E Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEF 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ G+P +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++A Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG + +A++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346 >gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile ATCC 43255] Length = 604 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 1/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + KK + +GN S+E + ++LA + + FS + ++ S L+ L+ Sbjct: 253 DKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 312 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + S ++T L + ++ +P + F++ GI + L Q + +KP+ Sbjct: 313 DFYMNINYSSIEKLVITGL-MDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKPNLS 371 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ G K ++S+ +L +K I ++ I +NY +L + +++Y Sbjct: 372 KLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 431 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V +L I + + + V D + + +L+M+KQE+KDE K S G+P IK + K Sbjct: 432 KDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAKIKQ 491 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA Sbjct: 492 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 551 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 552 GNEIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596 >gi|285018167|ref|YP_003375878.1| flagellar biosynthesis pathway component flhb protein [Xanthomonas albilineans GPE PC73] gi|283473385|emb|CBA15890.1| probable flagellar biosynthesis pathway component flhb protein [Xanthomonas albilineans] Length = 376 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 182/362 (50%), Gaps = 23/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGI-- 55 MSEN+ +TE P+ K++ + +GN P SRE A++FSS + L+ + + G Sbjct: 1 MSENEEGAERTEQPTEKRLRETREQGNIPRSRELATAAVFSSSIFALMGMSGSLTAGAVA 60 Query: 56 ---YSVTSDLHVLLASATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 +++ D H L D +F L + +V+P + + + G + L Sbjct: 61 WMKHALQPDPH----------LRDTPQALFGYFGDLLIGLFWVVLPLIGICVAAGFIAPL 110 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + + + P R++ G+ R+Y +LV +KS +++ VG + + + Sbjct: 111 LMGSLRFSGQALIPKLDRLNPMAGLARLYGTESLVELLKSMLRMGFVGGAAFLCIWKGLD 170 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEI 229 + + + H +L+ +A L +D Y +W+ +KLKM+++E+ Sbjct: 171 GLRGLLQQPLEQAIGHGLGFTLSMLLYTAGALALLAAIDA--PYQKWHYINKLKMTREEV 228 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 + E+K++ G+P +K R + + + +MMEA +A +++ NPTHYA+AL+Y AP Sbjct: 229 RREMKENDGSPEVKGRIRQMQMQMSQRRMMEAVPKADVVVVNPTHYAVALKYESGRMRAP 288 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 ++AKG + IA ++R++ +H + + P LAR+L+++ + IP Y AVAQ++ + Sbjct: 289 TVLAKGVDEIAFRIREVGEQHRVAVVSAPPLARALYREGQLGKEIPVRLYSAVAQILSYV 348 Query: 350 YH 351 Y Sbjct: 349 YQ 350 >gi|320187319|gb|EFW62016.1| Flagellar biosynthesis protein FlhB [Shigella flexneri CDC 796-83] Length = 341 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 140/237 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 73 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 132 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 133 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 192 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 193 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 252 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ I+ K Sbjct: 253 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 309 >gi|74311773|ref|YP_310192.1| flagellar biosynthesis protein FlhB [Shigella sonnei Ss046] gi|73855250|gb|AAZ87957.1| putative part of export apparatus for flagellar proteins [Shigella sonnei Ss046] Length = 323 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 140/237 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 55 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRL 114 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 115 MAESPTTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 174 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 175 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 234 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 235 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 291 >gi|323165329|gb|EFZ51117.1| flagellar biosynthetic protein FlhB [Shigella sonnei 53G] Length = 319 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 140/237 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 51 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRL 110 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 111 MAESPTTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 170 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 171 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 230 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 231 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 287 >gi|110615403|gb|ABF04070.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 5 str. 8401] Length = 358 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ Sbjct: 75 VFSGKSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRL 134 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 135 MAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 194 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 195 EGDPHVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 254 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 255 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 311 >gi|82543640|ref|YP_407587.1| flagellar biosynthesis protein FlhB [Shigella boydii Sb227] gi|81245051|gb|ABB65759.1| putative part of export apparatus for flagellar proteins [Shigella boydii Sb227] Length = 343 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 75 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 134 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 135 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 194 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 195 EGEPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 254 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ I+ K Sbjct: 255 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 311 >gi|156975417|ref|YP_001446324.1| flagellar biosynthesis protein FlhB [Vibrio harveyi ATCC BAA-1116] gi|156527011|gb|ABU72097.1| hypothetical protein VIBHAR_03148 [Vibrio harveyi ATCC BAA-1116] Length = 376 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 192/359 (53%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + ++S Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + S L L T+ ++ D + + + ++ L + + LF+ IG+ + I Sbjct: 60 IMSRLFDL----TRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGIS 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + P +++ G+KR+ + + V +KS +K+ LV T + I L + L Sbjct: 116 -FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALV-TGMAIYLIQASQADLIQ 173 Query: 177 ISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S + P +I +HA + +++I + + +DI + Q +LKM+KQE+KDE K Sbjct: 174 LSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G P +K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AK Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 293 GTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|148976426|ref|ZP_01813132.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3] gi|145964249|gb|EDK29505.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3] Length = 376 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 190/361 (52%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE + ++++ A +G S+E + S ++ + L++F ++ Sbjct: 1 MAESDGQE-RTEDATPRRLQQAKEKGQVARSKELASASVLIVGAVALMWFGESMAKALFE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV-------IPGLLLFMMFGIGSYLIQ 113 + L S ++ ++ D + + L ++ LV + + LF+ IG+ + Sbjct: 60 AMQRLF-SLSRDEIFDTNKL------LEIAGGALVNLLFPLFLILITLFIAAVIGAAGVG 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFT 172 I ++ P +++ GIKR++ + + V +KS +K+ LV G + + + Sbjct: 113 GIN-FSMQAAMPKASKLNPLSGIKRMFGLQSWVELIKSILKVALVSGMAVYLIQASQHDL 171 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 M + P +I +HA + +++I + + +DI + Q +LKM+KQE+KDE Sbjct: 172 MQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + G P +K R + + R + +MM +A +I+TNP H+++ALRY Q ++ AP++V Sbjct: 231 FKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA EH+I I P LAR+L+ + IP + AVAQ++ ++ Sbjct: 291 AKGVDHMAMKIREIAREHDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|325273555|ref|ZP_08139785.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51] gi|324101315|gb|EGB98931.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51] Length = 380 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 180/369 (48%), Gaps = 36/369 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASL-----------------FSSILAC 43 M+E+++ +KTE P+ K+ D+ +G S+E + + L Sbjct: 1 MAESESGQDKTEDPTEKRKRDSREKGEVARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60 Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103 L+ + F + I + L ++ + + + ++ LL +S V P L Sbjct: 61 LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISF-----VAPIALSGF 115 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 +F GS L +P F R++ GIKR++S++ L +K+ K ++ + Sbjct: 116 LFS-GSLL------------QPKFSRMNPLSGIKRMFSMHALTELLKALAKFFVILVVAV 162 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + L + +L + + H+ V + + + + D+ + +Q + KLK Sbjct: 163 VVLINDRQALLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKLK 222 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M+KQE++DE K S G P +K R + + R + +MM A +A +IITNPTHYA+AL+Y Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDP 282 Query: 284 TEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + AP+L+AKG + IA K+R+I EH + I E P+LAR+++ I IP Y AV Sbjct: 283 EKGGVAPLLLAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAV 342 Query: 343 AQLIYKIYH 351 AQ++ ++ Sbjct: 343 AQVLAYVFQ 351 >gi|77359754|ref|YP_339329.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis TAC125] gi|76874665|emb|CAI85886.1| Flagellar biosynthetic protein flhB, putative part of export apparatus for flagellar proteins [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/361 (28%), Positives = 184/361 (50%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFF--FSPGIYS 57 MSE D+ KTE P+SKK+EDA +G S+E ++F I + + L++ G+Y+ Sbjct: 1 MSE-DSGQEKTEEPTSKKVEDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V + S + + D + + + + A L+ P + +F++ + + I + Sbjct: 60 VMGRM----LSLNRNETYDTTKMFAVWGEV---ADALMFP-MAMFVLIIVLAAFIGNTML 111 Query: 118 LNLN----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 N P ++S +G KR++ V +KS +K LV + + + + Sbjct: 112 GGFNFSWQAAAPKASKMSPAKGFKRMFGPQAGVELLKSLLKFGLVASFAVFLINTFFDEI 171 Query: 174 LDF-ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 L + + P +I+ HA + + + + + + +D + + +LKM+ QE+KDE Sbjct: 172 LHLSVESAPGNII-HALEILAWMFLGLSCTLIIIAAIDAPFQSYNHNKQLKMTLQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K S G+P IK R + R + +MM+ A +I+TNPTHY++AL+Y AP++V Sbjct: 231 YKNSEGDPQIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A ++RKIA + +PI E PSL R+L+ + IP + AVAQ++ ++ Sbjct: 291 AKGIDEMAMQIRKIAIGNEVPILESPSLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|331657929|ref|ZP_08358891.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206] gi|331056177|gb|EGI28186.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206] Length = 345 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 140/237 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 77 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 136 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 137 MAESPLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 196 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 197 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 256 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 257 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 313 >gi|320177410|gb|EFW52411.1| Flagellar biosynthesis protein FlhB [Shigella dysenteriae CDC 74-1112] Length = 324 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 140/237 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 56 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 115 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 116 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 175 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 176 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 235 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ I+ K Sbjct: 236 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 292 >gi|212702654|ref|ZP_03310782.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098] gi|212673926|gb|EEB34409.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098] Length = 347 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 183/342 (53%), Gaps = 11/342 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS--DLHVLL 66 KTE P+ K++ D+ +G S++ +++A +YLL S + ++ + + +LL Sbjct: 4 EKTEQPTPKRLRDSREKGQVAKSQDVPSALTVMAVAVYLLAMSSDMLNTMQTMGEAPMLL 63 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 R E+ + +T L A R+ +P + + M+ + + L+Q + ++ P Sbjct: 64 MD---RPFEE--ALPLAVTSTLLCALRVALPLIGMVMVVALCANLMQVGVLFSVQAAMPK 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + +S+ + K+++S+ NLV F+K+ +K++++G + + + +Y L I ++ Sbjct: 119 LENLSMNKWFKQVFSLKNLVEFLKNIIKVLILGISVYVIFS-DYMPQLFRIPQGDIGDMW 177 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKN 244 +V L+++ + + + W + +W + MSK+E+K E K+S G+P+IK Sbjct: 178 RLLGSVCGDLVLVSAGVFCV-IAAADWCFQRWQFNKQHMMSKEEVKREFKESEGDPLIKG 236 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++K + + I + +A +++TNPTH+A+AL Y + PV++AKGQ ++A++M Sbjct: 237 KRKQLHQEMIAQNQIANVRKAKVLVTNPTHFAVALDYEKDRTPLPVILAKGQGVLAQRMI 296 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A E IPI LARSL++Q N+ IP VA+++ Sbjct: 297 ETAREEGIPIMRNVPLARSLYEQGTENAYIPQDLIGPVAEVL 338 >gi|22034295|gb|AAL01537.1| FlhB [Escherichia fergusonii] Length = 381 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 109/362 (30%), Positives = 181/362 (50%), Gaps = 23/362 (6%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 END+ KTE P+ + + A EG P SRE + S +LA LL G Y Sbjct: 3 EENDS--EKTEDPTPHRKQKAREEGQVPRSRELTSLSMLLAGWGLLLVG---GNYLAKQL 57 Query: 62 LHVLLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR----- 114 H+L T +L D H +L H A+ L+ L + F +G I Sbjct: 58 QHLLHNGLTFDRLLVSDPQH---MLHH----AAALLGMAFLAILPF-VGGLFITALVTPS 109 Query: 115 -IPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 I LN++ +K + K+++ GIKR++S + +KS +K++L G + L N Sbjct: 110 IIGGLNMSAKAIKFNLKKLNPLSGIKRLFSGQMVSEMVKSILKVLLAGIGGGLFLWLNKA 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 ++ I L + +++I+L + + D+ + + KL+MS +EIKD Sbjct: 170 KFINLIFEPLGMALADISALLIGCMLVIILSLIPMVAFDVIYQLWSNFKKLRMSLKEIKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G+P IK R + + R + +MM A +++ NPTHY++AL+Y + AP++ Sbjct: 230 EFKNQEGDPQIKARVRQLQRQMAQQRMMTDVPTADVVVNNPTHYSVALKYQEGAMGAPMV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VA G LIA ++R++A E+ +P+ E P LAR+L++ + +P Y AVA+++ +Y Sbjct: 290 VASGSGLIALRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYG 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|312883875|ref|ZP_07743592.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus ATCC BAA-2122] gi|309368333|gb|EFP95868.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus ATCC BAA-2122] Length = 350 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 185/343 (53%), Gaps = 13/343 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + S+++ L+ +LF FS S S L +L + Sbjct: 4 EKTELPTPKKLRDARQKGQVAKSQEV-VSSTLILALVAVLFAFSDYYMSHISALMLLPSK 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D +V + ++ L+ P LL+ ++ I S + Q + + + VKP K Sbjct: 63 LAYQGFQD--ALVDVAIAMAEEIIYLLAPILLVTVLVTIVSNMGQFGLLFSAHSVKPEIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +LV+F+KS +K+ L+ II I+L N T+L+ P+ L + Sbjct: 121 KINPAEGAKRIFSMKSLVDFIKSILKVSLLSCIIWITLKGNLNTLLNI----PNCGL-NC 175 Query: 189 FFTVRKVLIMILLFIATL-----TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + VL+ L+FI+ + +D + ++ +LKMSK E+K E K+ G+P IK Sbjct: 176 VPIITGVLVQQLMFISAIGFIIIAAVDYAYQKYEHTKQLKMSKDEVKREYKEMEGSPEIK 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 + ++ + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M Sbjct: 236 SARRQFHQELQSSTQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRM 295 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A E IP+ ++ LAR+L+ ++ IP +A A+++ Sbjct: 296 IALAREEGIPVMQKVPLARALYADGQLDQYIPGELIEATAEIL 338 >gi|255024132|ref|ZP_05296118.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-208] Length = 288 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 159/292 (54%), Gaps = 5/292 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + S+ +F + ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPKLANMESYSLFYVMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGED 288 >gi|253573537|ref|ZP_04850880.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon 786 str. D14] gi|251847065|gb|EES75070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon 786 str. D14] Length = 363 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 189/357 (52%), Gaps = 25/357 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDL--H 63 KTE + KK ++A +G S+E A L + CL +F + + D+ H Sbjct: 15 EKTEKATPKKRQEARKKGQVAKSQELTGALLLMAGFLCLTAFAGYFKDRLIGLFVDVFYH 74 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L T+ ++++ ++ ++ L+ P L+ ++ + + Q +L + Sbjct: 75 RLSMEVTK------TNVMAMMGEYAVQVLLLLAPIFLVVIVVAVVANYAQIGFMLVGEPL 128 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF---ISAN 180 K F ++ +G K I+S+ +LV F+K+ K++++G ++ Y T+ + +SA Sbjct: 129 KIKFSKLDPIKGFKNIFSMRSLVQFVKTLFKLLIIGYLV-------YSTIWGYRGSLSAL 181 Query: 181 PHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 H + F ++ + + L IA L VLD + ++ LKMSKQ+IKDE K+ Sbjct: 182 GHVSVDDTFHFTAQLTMNLGLKIAAALIVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKM 241 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P+IK + + R +MM+ +A +IITNPTH+A+AL+Y ++ DAP ++AKGQ Sbjct: 242 EGDPLIKGKIRERQRRMALQRMMQEVPKADVIITNPTHFAVALKYDGSKMDAPQVIAKGQ 301 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A ++++IA EH + E LAR+LF++ I IP ++AVA+++ +Y K Sbjct: 302 DYVALRIKEIAKEHGVITMENKPLARALFQRTEIGDTIPADLFQAVAEVLAYVYRIK 358 >gi|219854407|ref|YP_002471529.1| hypothetical protein CKR_1064 [Clostridium kluyveri NBRC 12016] gi|219568131|dbj|BAH06115.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 609 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 107/356 (30%), Positives = 198/356 (55%), Gaps = 18/356 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--------S 57 A D+KTE + +K DA +G P S+E +L ++LA + +L + G Y Sbjct: 264 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVIL---ALGGYVGSQVKTTM 320 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 +T + L+ S ++ I+ I L L++ + +P L++ G+ + Q + Sbjct: 321 ITFFNNYLVMSLDYASVQKITFIT--LWRLAIIFLPVAVPILVM----GVLANFFQTRGL 374 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + +KP F +++ G KR++S+ +++ +KS I +VG I + +NY ++ Sbjct: 375 VTSHPLKPDFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLS 434 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S N SI+ + + + + + ++D + Q+ L+MSKQE+K+E KQ Sbjct: 435 SLNFESIVKAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDE 494 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK++ K R +MM+ +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+ Sbjct: 495 GDPQIKSKIKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQD 553 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A +++K+A + ++PI E P LAR ++K+V ++ IP Y+AVA+++ +Y + Sbjct: 554 LVALRIKKVAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 609 >gi|153953791|ref|YP_001394556.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium kluyveri DSM 555] gi|146346672|gb|EDK33208.1| Fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium kluyveri DSM 555] Length = 606 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 107/356 (30%), Positives = 198/356 (55%), Gaps = 18/356 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--------S 57 A D+KTE + +K DA +G P S+E +L ++LA + +L + G Y Sbjct: 261 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVIL---ALGGYVGSQVKTTM 317 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 +T + L+ S ++ I+ I L L++ + +P L++ G+ + Q + Sbjct: 318 ITFFNNYLVMSLDYASVQKITFIT--LWRLAIIFLPVAVPILVM----GVLANFFQTRGL 371 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + +KP F +++ G KR++S+ +++ +KS I +VG I + +NY ++ Sbjct: 372 VTSHPLKPDFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLS 431 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S N SI+ + + + + + ++D + Q+ L+MSKQE+K+E KQ Sbjct: 432 SLNFESIVKAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDE 491 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK++ K R +MM+ +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+ Sbjct: 492 GDPQIKSKIKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQD 550 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A +++K+A + ++PI E P LAR ++K+V ++ IP Y+AVA+++ +Y + Sbjct: 551 LVALRIKKVAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 606 >gi|157738150|ref|YP_001490834.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018] gi|315636293|ref|ZP_07891543.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22] gi|157700004|gb|ABV68164.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018] gi|315479382|gb|EFU70065.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22] Length = 349 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 110/351 (31%), Positives = 188/351 (53%), Gaps = 14/351 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+SKK+EDA NEGN S E S + I+LLFF + + L +L Sbjct: 5 EEKTEEPTSKKLEDAKNEGNVSKSMEVVGASILTFGSIFLLFFSGSSMLEIKK-LMMLSY 63 Query: 68 SATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQ----RIPVLNLNH 122 + ++++ + + +T+ + ++ + + P +L ++ G+ Q IP+ Sbjct: 64 NFIGQEMD--GPLYYAITYTVVITLLKALAPLFILVILLGLVGNWAQFGFISIPL----- 116 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 K +++ +G+K I+ + L+ +K +K+ ++ T++ I + Y L ++ Sbjct: 117 -KFDLQKLDPIKGLKNIFGLKKLLEALKLSLKLAIIITVMFIIFSLTYNEFLAMMNKETM 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + + IL I ++D +S + + LKMSKQEIKDE K G+P + Sbjct: 176 ATISSMLQLTIYFIFTILFIIIIFAIMDFYFSKYYYMKSLKMSKQEIKDEYKNMEGDPQV 235 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R + I + +MM A ++ITNPTHYA+AL+Y N APVLVAKG + +A K Sbjct: 236 KGRIRRIQMQMAQKRMMGNVPNADVVITNPTHYAVALKYDNKVNSAPVLVAKGIDFLALK 295 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IA E+N+ I E P+LAR+L+ Q+ ++ IP FYKA+A++ +Y K Sbjct: 296 IKDIAKENNVTIIENPALARALYDQIEVDKEIPNQFYKAIAEIFSYLYELK 346 >gi|297516775|ref|ZP_06935161.1| flagellar biosynthesis protein FlhB [Escherichia coli OP50] Length = 345 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 140/237 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ Sbjct: 77 VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 136 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS Sbjct: 137 MAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 196 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG Sbjct: 197 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 256 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 257 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 313 >gi|56460295|ref|YP_155576.1| flagellar biosynthesis protein FlhB [Idiomarina loihiensis L2TR] gi|56179305|gb|AAV82027.1| Flagellar biosynthesis proten FlhB [Idiomarina loihiensis L2TR] Length = 375 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 179/354 (50%), Gaps = 9/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +TE P+ ++ + A ++G S+E +L F+F +Y Sbjct: 1 MAETD--QERTEDPTERRKQQARDKGQIARSKEMGT-GFVLVSAAVSFFWFGGALYQGVR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLN 119 ++ ++ + ++ D S + +++ ++ P L +F + ++L + +N Sbjct: 58 NVFEIMFTLDRQHAFDTSK---MYEAFAIAFGEILWPILTIFAFIVVFTFLGNSWLGGIN 114 Query: 120 LNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P F R++ G KR++ + LV +K+ K ++V L + +L Sbjct: 115 FSAQAMAPKFNRMNPLNGFKRMFGVQALVELIKAIAKFMVVAVSAYFLLKWKFVDILQMS 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +++ +A T+ + +++ L I + V+D + + LKMSKQE+KDE K + Sbjct: 175 MGQMPTMIENALDTLLWMFLLLCLSIFLIVVIDAPFQVWKHNKDLKMSKQEVKDEHKDTE 234 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + +MM+ +A +++TNPTHYA+AL+Y APVL+AKG + Sbjct: 235 GSPEVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHYAVALKYDDGGVQAPVLLAKGTD 294 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A K+R+IA E+ IP+ P LARS++ + IP + AVAQ++ +Y Sbjct: 295 ETAAKIREIALEYEIPLVASPGLARSIYHTTELEKEIPKGLFVAVAQILAYVYQ 348 >gi|226939714|ref|YP_002794787.1| FlhB1 [Laribacter hongkongensis HLHK9] gi|226714640|gb|ACO73778.1| FlhB1 [Laribacter hongkongensis HLHK9] Length = 389 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 177/357 (49%), Gaps = 15/357 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TE + ++ E A EG P SRE + F+ + + +L + +Y Sbjct: 1 MAE-DSDLERTEEATPRRREQAREEGQVPRSRELATFTVTMTG-VAMLVAYGGVLYQQLK 58 Query: 61 DLHVLLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----IGSYLIQR 114 +L + T+ L ED + + S L I G+L + IG + Sbjct: 59 ELFARTLTFTRATLDAEDAAQLALRGGLTDGLVSILPILGVLFVLALVTPALIGGW---- 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 L+ V+P F +++ GIKRI+S+ + K+ +K +L+G + T + ++ Sbjct: 115 --NLSWKAVEPKFSKINPLSGIKRIFSVQGAIEGAKAILKSLLIGGVATWVIWNERAELV 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + L A L+++ + L ++D+ + Q+ L+M+K+++K E+K Sbjct: 173 SLTRLSLDQALARAVDLTLHTLLIVAGAMVLLVLIDVPFQLWQYSKNLRMTKEDVKKEMK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 +S G+P +K R + + R R +MM A+++ITNPTHYA+ALRY + AP ++AK Sbjct: 233 ESEGSPEVKGRIRQLQREAARRRMMSDVPNASVVITNPTHYAVALRY-EDGMAAPKVIAK 291 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G +A+++ ++A E+ + I P AR+L+ I IP Y A AQ++ ++ Sbjct: 292 GSMKVAERIIELARENRVTILRAPPFARALYFNSEIGDDIPAALYSAAAQVLAYVFQ 348 >gi|84388124|ref|ZP_00991020.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] gi|84377191|gb|EAP94061.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] Length = 376 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 190/361 (52%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE + K+++ A +G S+E + S ++ I L++F ++ Sbjct: 1 MAESDGQE-RTEDATPKRLQQAKEKGQVARSKELASASVLIVGAISLMWFGESMAKALFE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV-------IPGLLLFMMFGIGSYLIQ 113 + L S ++ ++ D + + L ++ LV + + LF+ IG+ + Sbjct: 60 AMQRLF-SLSRDEIFDTNKL------LEIAGGALVNLLFPLFLILITLFVAAVIGAAGVG 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFT 172 + ++ P +++ GIKR++ + + V +KS +K+ LV G I + + Sbjct: 113 GVN-FSMQAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDL 171 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 M + P +I +HA + +++I + + +DI + Q +LKM+KQE+KDE Sbjct: 172 MQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + G P +K R + + R + +MM +A +I+TNP H+++ALRY Q ++ AP++V Sbjct: 231 FKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ Sbjct: 291 AKGVDHMAMKIREIARENDIYIIPAPPLARALYHTTELEQQIPDGLFAAVAQVLAYVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|257871304|ref|ZP_05650957.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2] gi|257805468|gb|EEV34290.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2] Length = 355 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 180/358 (50%), Gaps = 30/358 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64 D KTE PS+K++ DA G P ++E + S+L + L FF+ S Sbjct: 5 DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLTLSLWQFFAASFLPYFSRSLA 64 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LA Q L D+ L L L P L+ + G+ + Q + + VK Sbjct: 65 QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAVK 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181 P FK+++ GIK+ +S+ +L+N K+ K G I+ Y F++A P Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLGKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170 Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 +IL+ +++ + I +F+ L V+D G+ + L MSKQE+K+E Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEF 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 KQ G+P +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++A Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KG + +A++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346 >gi|292489168|ref|YP_003532055.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|292900286|ref|YP_003539655.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291200134|emb|CBJ47260.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291554602|emb|CBA22250.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|312173327|emb|CBX81582.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC BAA-2158] Length = 381 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 180/356 (50%), Gaps = 19/356 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI-YLLFFFSPG--IYSVTS 60 ++ + KTEAP+ +I A EG P SRE +++L L+ + L S G + S+ Sbjct: 3 QESDNEKTEAPTPSRIARAREEGQIPRSRE---LTTLLMLLVGWGLMLCSGGNLVRSLQG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL------VIPGLLLFMMFGIGSYLIQR 114 LH L + D I+ L SAS L ++P + ++ + + + Sbjct: 60 LLHNGL-------IFDRLLILDPAQMLQRSASLLGQAFMAIMPFVFGLLLTAVSAPPLIG 112 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 +L+ + P K+++ GIKR++S +K+ +K++L + L N + Sbjct: 113 GLILSGKSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFI 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 I L + L+ +++ + + D+ + + + KL+MS+QEIKDE K Sbjct: 173 RLIFEPLGMALTDISSLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAK Sbjct: 233 KQEGDPQIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 G L+A ++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y Sbjct: 293 GSGLVALRIRELAESHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVY 348 >gi|15607000|ref|NP_214382.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5] gi|6225349|sp|O67813|FLHB_AQUAE RecName: Full=Flagellar biosynthetic protein flhB gi|2984250|gb|AAC07777.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5] Length = 350 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 110/351 (31%), Positives = 190/351 (54%), Gaps = 9/351 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A ++KTE + K EGN S E + +L L+ LL G Y + ++ ++ Sbjct: 2 AEEHKTERATPYKRRKVREEGNVAKSHEIASSLVVLLSLLLLL---FLGTY-IAKEVILI 57 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + T DIS + L + + +++ P L ++ I S++ Q + L + Sbjct: 58 FLAVTGYVHADISELGSLYENFYENIVKVLTPLFFLALLVVILSHVAQFGFIFTLKPLSF 117 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVK-IILVGTIITISLTENYFTMLDFISANPHSI 184 ++R++ EGIKR+ S+ L +K+ +K +L+G + + YF + S P + Sbjct: 118 KWERINPFEGIKRLISLTTLFETVKNTLKAFLLIGIAVFVLKGSLYFFLSS--STYPLAE 175 Query: 185 LYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 +F + ++ L +A L LD + Q+ K+ MS++E+K+E KQ G+P +K Sbjct: 176 TLKSFIKTSAITLITLGVVALLIAFLDYAFKRWQYEKKIMMSRRELKEEYKQLEGHPEVK 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +R K+ R + +MM +AT++ITNPTH A+AL+Y ++ APV+VAKG+ IA+K+ Sbjct: 236 SRIKARMRELAKSRMMAEVPKATVVITNPTHIAIALKYNPEKDKAPVVVAKGKGTIAQKI 295 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI-YKIYHKK 353 +IA ++IP+ +P LAR+L+ V + I P FYKAVA++I Y ++ KK Sbjct: 296 VEIAENYSIPVVRKPELARALYPAVEVGKEISPKFYKAVAEIIAYVMFKKK 346 >gi|296103646|ref|YP_003613792.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058105|gb|ADF62843.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 381 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 111/365 (30%), Positives = 188/365 (51%), Gaps = 26/365 (7%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MSE ND+ KTE P+ + + A EG P SRE +S+L L G + Sbjct: 1 MSEQNDS--EKTEDPTPHRKQKAREEGQVPRSRE---LTSLLMLLAGWGLLLVAGGWLAK 55 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-----QR 114 LH+L T +L +S +L H A L+ L + F G +L Sbjct: 56 QLLHLLHNGLTFDRLL-VSDPQQMLHH----AGSLLGMAFLALLPFVGGLFLTAVATPSL 110 Query: 115 IPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 I LN++ +K + K+++ GIKR++S + +KS +K+ L G + L +F Sbjct: 111 IGGLNMSAKALKFNVKKLNPISGIKRLFSAQMVSEMVKSILKVTLAGIGGGLFL---WFN 167 Query: 173 MLDFISANPHSILYHAFFTVRKVLI--MILLFIATLTVLDIGWSYHQW--YSKLKMSKQE 228 FIS + L A + +L+ M+++ ++ + ++ Y W + KL+MS +E Sbjct: 168 KGKFISLM-YEPLRMALGDISALLMGCMLVIILSLIPMVAFDVVYQLWSNFKKLRMSLKE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 IKDE K G+P+IK++ + + R + +MM A +++ NPTHY++AL+Y + A Sbjct: 227 IKDEFKNQEGDPLIKSKVRQLQRQMAQQRMMSDVPTADVVVNNPTHYSVALKYQEGAMGA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P++VA G LIA ++R++A E+ +P+ E P LAR+L++ + +P Y AVA+++ Sbjct: 287 PMVVASGSGLIALRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAW 346 Query: 349 IYHKK 353 +Y K Sbjct: 347 VYGLK 351 >gi|153947127|ref|YP_001399615.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 31758] gi|152958622|gb|ABS46083.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP 31758] Length = 377 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 179/345 (51%), Gaps = 7/345 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +++ K+E P++ K+ A +G+ P S++ ++ + ++ I LL F P + S Sbjct: 2 SNSSGEKSEKPTTGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKELISQSF 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 V ++ + + + FLL +L + A L L+ +F + + LI N V Sbjct: 61 VSVSQLASQLNDQGALEQFLLANLFIFAKFLAT--LVPIPLFSMLATLIPG--GWNFTPV 116 Query: 124 K--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 K P K++S GIKRI+S +N +K K +V + + + + +L + Sbjct: 117 KLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPL 176 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + F +L+ + + ++DI S+H + K+KM+KQE+K E K + GNP Sbjct: 177 EEAITQGFAQYHHILLYFIAIVVVFAIIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPE 236 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK+R + + R ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA Sbjct: 237 IKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIAL 296 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R IA +H I I E P LAR+++ +N IP Y+A+AQ++ Sbjct: 297 YIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVL 341 >gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 612 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 106/342 (30%), Positives = 183/342 (53%), Gaps = 2/342 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK D+ +G S++ S+ +++ C I + ++ I + Sbjct: 264 ASDDKTEEATPKKKSDSRKKGQIARSKDVSVALTMVVCTIAVSACWNMMINGFKEVMIYF 323 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +S L+T + A L +P L M+ GI + L+Q ++ +KP Sbjct: 324 LQLPMLDNFDKLSLTGILITVIMRVAYGL-LPIALPIMVGGIIASLMQTGFLITGEPLKP 382 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 SFK+++ GIK + S ++V+ K+ V I +V I ++ NY ++ + S+ Sbjct: 383 SFKKLNPLSGIKNMISKRSIVDLCKNLVVISIVSIISYRYISSNYQKIISMSNIYIPSLN 442 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 V + I + + + +D + LKM+KQE+KDE KQ G+P +K + Sbjct: 443 VEIKTLVLDIFKQICIALIVIAAIDYFVQFKMHNKDLKMTKQEVKDEYKQQEGDPQLKGK 502 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMR 304 K R R +MM++ S AT++ITNPTH A+AL+Y + T+ +AP ++AKG + +A K++ Sbjct: 503 IKQKQREMSRQRMMQSVSDATVVITNPTHLAIALKYEEGTDMEAPKVLAKGTDYLALKIK 562 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA E+ IPI E LAR ++ +V I++ IPP Y+ VA+++ Sbjct: 563 SIAKENEIPIIENKPLARMMYDKVEIDNDIPPELYQGVAEIL 604 >gi|163801858|ref|ZP_02195755.1| flagellar biosynthesis protein B [Vibrio sp. AND4] gi|159174366|gb|EDP59170.1| flagellar biosynthesis protein B [Vibrio sp. AND4] Length = 376 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/359 (28%), Positives = 193/359 (53%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 MSE+D + +TE + K+++ A +G S+E + S ++ I L++F + +++ Sbjct: 1 MSESDGQE-RTEDATPKRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFA 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + S L L T+ ++ D + + + ++ L + + LF+ IG+ + + Sbjct: 60 IMSRLFDL----TRDEIFDTAKLFDIAFGAMADLLFPLFLILITLFIAALIGAAGVGGVS 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG--TIITISLTENYFTML 174 + P +++ G+KR+ + + V +KS +K+ LV I I +++ L Sbjct: 116 -FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVGLVAGMAIYLIQASQSDLIQL 174 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + P +I +HA T+ +++I + + +DI + Q ++LKM+KQEIKDE K Sbjct: 175 S-MDVYPQNI-FHALDTLLNFILLISCSLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 ++ G P +K R + + R + +MM +A +IITNP H+++ALRY Q + AP+++AK Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPIVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A K+R++A E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 293 GTDHMAMKIREVARENDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|149189857|ref|ZP_01868137.1| flagellar biosynthetic protein [Vibrio shilonii AK1] gi|148836343|gb|EDL53300.1| flagellar biosynthetic protein [Vibrio shilonii AK1] Length = 375 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/348 (29%), Positives = 186/348 (53%), Gaps = 6/348 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58 MSE + D KTE S +KI+ A EG P ++E F++ + LI ++F+S I+ Sbjct: 1 MSEQSSQD-KTEKASPQKIKKARQEGQIPRAKE---FTTAVLFLIVAIYFYSQIGRIWEH 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 S + + T++ LE+ ++ L L++P ++ ++ IGS +I + Sbjct: 57 ISGVFRFNMALTRQDLENPKQMIEQLGQSLGIIIELLLPMFMVIVIAAIGSSMILGGWMF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +++P +++ G+ R++S +LV +KS +K+ ++ ++ L N+ +L Sbjct: 117 RPANIQPKLSKLNPISGVGRMFSTRSLVELLKSSLKVTVIFALLYTYLDSNFSQLLGMQK 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + L+++ + + V+DI + + +LKM+KQE+K+E K + G Sbjct: 177 LTLSQGITMVMTILFEGLLLMGVALLIFGVIDIPYQRWEHLKQLKMTKQELKEEYKNNEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 P +K R + I + R K+ +A +A ++ITNPTHYA+AL+Y + +DAP +VAKG + Sbjct: 237 CPEVKQRIRQIQQQFARRKIDKAVPKADVVITNPTHYAVALKYDTSLSDAPFVVAKGIDE 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 297 TAMHIQRIARENQVEILHSPPLTRSIYYTTAIEQAIPSQLYIAVAHIL 344 >gi|313634400|gb|EFS00988.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL N1-067] Length = 303 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 146/255 (57%) Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 ++++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ LV +K+ Sbjct: 38 GKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGLVEVVKA 97 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + I L+ + I ++ T++ + N L F + V + + L IA + +LD Sbjct: 98 LLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSLKQIFSLFKNVXLALFLVIAVIGLLDF 157 Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ N Sbjct: 158 FYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNN 217 Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH ++ +RY + ++ AP L+AKG++ +A +R++A +P+ LARS++ + Sbjct: 218 PTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPD 277 Query: 332 SAIPPVFYKAVAQLI 346 I YK V +++ Sbjct: 278 EYIQEDLYKDVIEVM 292 >gi|162417792|ref|YP_001604479.1| type III secretion appartus protein YscU [Yersinia pestis Angola] gi|162354812|gb|ABX88759.1| type III secretion appartus protein YscU [Yersinia pestis Angola] Length = 354 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 181/338 (53%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI DA +G S+E + ++++ L +L + S + S L +L Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEV-VSTALIVALSAMLMWLSDYYFEHFSKL--MLIP 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP K Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK++++ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + M E R+++++ NPTH A+ + Y + E P++ K + + +RKIA Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +PI + LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338 >gi|254291356|ref|ZP_04962149.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226] gi|150422686|gb|EDN14640.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226] Length = 376 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 105/365 (28%), Positives = 185/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE +S++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDGQE-RTEEATSRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|124268261|ref|YP_001022265.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] gi|124261036|gb|ABM96030.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] Length = 387 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 183/354 (51%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ A D A S +K++ A +G P SR+ F+++ A I LL +P + T Sbjct: 1 MADQGAQDRNLPA-SERKLKKAREDGQVPRSRDLGHFAAVAAG-IALLAAMAP---TATG 55 Query: 61 DLHVLLASATQ---RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + LL S + L + + L L + + ++P + ++ + S L Sbjct: 56 WMTRLLQSGLRFDAGTLNGTASMSERLAELGVQFAWAMLPIGAVMVLAALASSLTVGGWN 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L ++P F +++ G+ R+ S + LV+ ++S V +++G + L++N F + Sbjct: 116 FTLKAIEPKFSKLNPLTGLPRMLSADRLVDTVRSCVLALVIGLVGAFYLSQNVFQFTSTL 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L A V L+ +LL +A ++D+ Q +LKMS QE+K E K++ Sbjct: 176 TLPLPTALAQAGNDVLYGLMFLLLALAVFALIDVPLQRFQHAKRLKMSHQEMKQEHKENE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GN +K + K+ R +M+ A +A +++ NPTHYA+AL+Y + AP +VAKG + Sbjct: 236 GNVEVKAKVKARMREMANRRMLAAVPKADLVVMNPTHYAVALKYEEGRGGAPRVVAKGAD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 L+A ++R +A + +P+ + P LAR+L+ ++ IP Y AVAQ++ +Y Sbjct: 296 LMAMRIRDLAKDSKVPVLQAPVLARALYAHAELDREIPIALYTAVAQVLAYVYQ 349 >gi|27365293|ref|NP_760821.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus CMCP6] gi|320155677|ref|YP_004188056.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O] gi|27361440|gb|AAO10348.1| flagellar biosynthetic protein FlhB [Vibrio vulnificus CMCP6] gi|319930989|gb|ADV85853.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O] Length = 376 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 188/356 (52%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIPVLN 119 + L S ++ ++ D S + + + + ++ L F+ IGS + I + Sbjct: 60 AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGIS-FS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P +++ GIKR++ + + V +KS +K+ LV T + I L + L +S Sbjct: 118 VEAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALV-TGVAIYLIQASQEDLIQLSL 176 Query: 180 N--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + P +I +HA + +++I + + +DI + Q +LKM+KQE+KDE K + Sbjct: 177 DVYPQNI-FHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P +K R + + R + +MM A +I+TNP H+++ALRY Q + APV+VAKG + Sbjct: 236 GKPEVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPVVVAKGTD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 296 HMAMKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351 >gi|331006676|ref|ZP_08329954.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] gi|330419508|gb|EGG93896.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] Length = 377 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 182/357 (50%), Gaps = 13/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+D+ KTE + KK E A +G P S+E S +LA I L + F + + Sbjct: 1 MSESDSSQEKTEEATPKKAEKAKEDGQVPRSKELITTSVLLAGTIGL-YLFGGILANSMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQR 114 D+ L + ++ + D +++ L A +IP + ++ G+G +L Sbjct: 60 DIAKLNFAISREAIFDPAYMFSNLGQSFYDAFLALIPIFAVLLIAAIVGPIGLGGWL--- 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + P R++ G+KR++S+ L+ K+ K++L+ + + L ++ Sbjct: 117 ---FSAKSMMPKMSRMNPGAGLKRMFSVTALIELAKALAKVVLIILLSLLLLKSLEGELM 173 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + ++ + H+ I + L + ++D+ + KLKM+ QE+KDE+K Sbjct: 174 SLAYQDINASIMHSLEISMWSAIALSLVTIFIAIVDVPIQIWESAKKLKMTMQEVKDEMK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G P +K R + + + +MM A ++ITNPTHY++A++Y + P++VAK Sbjct: 234 DTDGKPEVKGRIRQLQQEIANRQMMGEVPEADVVITNPTHYSIAVKYKPEMMETPIVVAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G +L+A ++R++A EH++ I E P LAR+++ I+ IP Y AVA+++ ++ Sbjct: 294 GVDLVAFRIREVAKEHSVDIVESPILARAIYNTTKIDEPIPKGLYIAVAKVLAYVFQ 350 >gi|253702491|ref|YP_003023680.1| flagellar biosynthesis protein FlhB [Geobacter sp. M21] gi|251777341|gb|ACT19922.1| flagellar biosynthetic protein FlhB [Geobacter sp. M21] Length = 353 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 188/355 (52%), Gaps = 6/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SV 58 M++ D +KTE P+SKKIE+A N+ P SRE + S++ ++ L + S G++ ++ Sbjct: 1 MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTL--YASSGLFLKTM 57 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + + + +L + ++ A L P +L+ ++ GI + Q + Sbjct: 58 KTSMQEIFGGLARPELTFAAVHTLMIKEFGYLAIMLA-PFILVGIVAGIAVEVTQGGLTV 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + +K R++ +G+ R+++ +++ KSF+K+ +VG + LTE ++ + Sbjct: 117 SSEKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIIYLVD 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + I+ K+++ + L VLD+ + ++ LKM+KQE+KDE K G Sbjct: 177 QDLMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFIENLKMTKQEVKDEHKNMEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K +QK R +M + A +++TNPTHYA+AL+Y + + APV++ KG + Sbjct: 237 DPAVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAIALKYDRLQMAAPVVLFKGVDQ 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +++ A EHN+ + E LAR L+ QV IP + AVA+++ +Y K Sbjct: 297 MALQIKITAREHNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351 >gi|240145485|ref|ZP_04744086.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82] gi|257202300|gb|EEV00585.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82] Length = 379 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 110/373 (29%), Positives = 190/373 (50%), Gaps = 46/373 (12%) Query: 5 DAPDN-KTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPG-------- 54 D P KTE + KK+ +A +G S+E + F I+ L+ +F G Sbjct: 19 DGPGGEKTEPATEKKLREAREDGKVAKSKELTAAFDLIVLFLVLKVFISLIGNGFLEVFY 78 Query: 55 -IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLI 112 +Y + D + A + K I L ++ + ++ P F +FG+ + L+ Sbjct: 79 YVYKLMPDFVSVNAMESSTK-----EITSFLHNVYIEMFKMAAP----FFVFGVAVTALV 129 Query: 113 QRIPV---LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT-- 167 + V + +KP + + G KRI+S ++L +KS +KI G II ++ T Sbjct: 130 SILQVGWKVTAKPLKPKGDKFNPINGFKRIFSKDSLFELLKSILKI---GLIIYVAYTSI 186 Query: 168 ----ENYFTMLDFISANPHSILY-----HAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 + F + D I N +L +A F + V +++ + D + H++ Sbjct: 187 KGEANDIFILYD-IPLNQAVVLCGNVIINAGFKISLVYLVV-------GIADFVYQKHRF 238 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 +KM+KQE+KDE K + GNP IK RQ+ R + +MM+ +A ++ITNPTH A+A Sbjct: 239 NEDMKMTKQELKDEYKNTEGNPEIKGRQRQRMREASQRRMMQDVPKADVVITNPTHLAVA 298 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 ++Y + AP+++AKG++ +A+K+R+ A E++I I E LAR L+ V I + IPP Sbjct: 299 IKYDAEVSRAPIVIAKGEDYLAQKIREKAKENHIEIVENKPLARMLYANVDIGAEIPPEL 358 Query: 339 YKAVAQLIYKIYH 351 Y+AVA+++ +Y+ Sbjct: 359 YQAVAEILAMVYN 371 >gi|297584054|ref|YP_003699834.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens MLS10] gi|297142511|gb|ADH99268.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens MLS10] Length = 359 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 185/353 (52%), Gaps = 13/353 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK ++ N+G S + + + + L FF G + V L ++ + Sbjct: 13 EKTEKATPKKKRESRNKGQVAKSTDVN---TAFILMFVFLMFFFAGPFMVDQMLTIVRFT 69 Query: 69 ATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + L D++ ++ + A+ V P +L ++ G+ + +Q + VK Sbjct: 70 MEEYLLMDVTPANVQPMFIDYIFQAAVAVAPVMLASVIAGVFANYVQVGVLFAPEAVKFK 129 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++++ +G KRI+SI LV F+KS +KI+LVG + I + + M D + +++ Sbjct: 130 LEKINPLKGFKRIFSIRALVEFLKSMMKIVLVGGVTGIVI---WLYMDDLLKIGLYAVED 186 Query: 187 HAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 A ++ M L + L +LD + + + ++MSKQ++KDE K++ G+P+IK Sbjct: 187 AAVLIGTLIIFMGLAVGFLLIFLAILDYMYQKYDFEKNIRMSKQDVKDEYKKTEGDPLIK 246 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ K R +MM+ +A ++ITNPTHYA+AL+Y +APV+VAKG + +A K+ Sbjct: 247 SKIKEKQRQMAMSRMMQEVPKADVVITNPTHYAIALKYDADNMEAPVIVAKGVDYVALKL 306 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY--HKKI 354 IA + + E LAR+L+ Q I +P +KAVA+++ +Y KKI Sbjct: 307 INIAKNNEVLTAENRPLARALYAQADIGDQVPEDLFKAVAEVLAYVYRIQKKI 359 >gi|56475796|ref|YP_157385.1| flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1] gi|56311839|emb|CAI06484.1| Flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1] Length = 388 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 178/339 (52%), Gaps = 37/339 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSP----GIYS 57 D+ KTE S +++E A EG P SRE S F ++ A ++L+ + G+ Sbjct: 3 EDSDLEKTEQASPRRLEQAREEGQVPQSRELSTFLVLITGASGLWLMGGWIGERMLGMLR 62 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 LA Q L+D L T L+ ++P + M+ +G+ ++ V Sbjct: 63 HGFRFERALAFDPQLMLQDFGD---LFTQALLT----MLPLFGVLMVAAVGAPILLGGFV 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTML 174 + + R+ +GI R++ ++ LV +KS +K +VG I ++ ++ F + Sbjct: 116 FSPKALGLELDRMDPLKGIGRMFLLHGLVEMLKSLLKAAVVGGIGVFAMWRERDHIFALT 175 Query: 175 ---------DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 DF+ A +L+ A ++I++ +A L ++D+ + Q++ +L+M+ Sbjct: 176 SEAVERAVPDFLQA----VLFSA--------LLIIMGLALLALIDVPFQLWQYHKRLRMT 223 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K+E+K E K+ G+P +K R +S+ R R +MM +A +++TNPTH+++AL+Y + Sbjct: 224 KEEVKREGKEQEGDPHVKGRIRSMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAQK 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 APV+VAKG+ IA K+R++A EH +P+ E P LAR++ Sbjct: 284 MGAPVVVAKGRGEIALKIRELAKEHKVPLLEAPPLARAV 322 >gi|183221908|ref|YP_001839904.1| flagellar biosynthetic protein FlhB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167780330|gb|ABZ98628.1| Flagellar biosynthetic protein FlhB; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 403 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 177/358 (49%), Gaps = 17/358 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + +TE PS ++ + +GN P S E + +L L I + + Sbjct: 51 ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 110 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-------RIPVL 118 L + +L+ +S L+ P L + ++F I ++Q R Sbjct: 111 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 170 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P+FKRV + + L N +KS K++L+G I I ++ ++ +L + Sbjct: 171 RFDRISPNFKRV--------LPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGN 222 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++ K+++ L + + V D + ++ LK + E K E+K+ G Sbjct: 223 MGMMQAITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSG 282 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++KNR+ +AR ++ M+ +A ++ITNPTHY++AL Y + AP ++AKG+N Sbjct: 283 DPVMKNRRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENR 342 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354 +A ++R+IA E+++PI E P AR L+ QV + IP F++AV Q++ + + KK+ Sbjct: 343 LALEIRRIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 400 >gi|323956511|gb|EGB52253.1| flagellar biosynthetic protein FlhB [Escherichia coli H263] Length = 263 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 138/231 (59%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P Sbjct: 1 MQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPI 60 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P + Sbjct: 61 TAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 120 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A + Sbjct: 121 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALR 180 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 181 IREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 231 >gi|20807870|ref|NP_623041.1| flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] gi|20516434|gb|AAM24645.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] Length = 362 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 178/344 (51%), Gaps = 2/344 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67 KTE + K+ ++A +G SRE + ++ + + F + V + L LL Sbjct: 14 EKTEPATPKRRQEARKKGQVFQSREITSALVVVTGFLMINLFLQSFLGRVGNLLKFLLIT 73 Query: 68 -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S + + + I + ++ + +P +L + S Q V + Sbjct: 74 YSGANDDVFNTAGIWKIFYYVVNQIVLISVPVILAIFAVSLISTYFQVGFVFTAEPLTLK 133 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F+R++ EG KRI+S LV +KS K++++ I+ L Y + + + +L Sbjct: 134 FERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLLR 193 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + I I + + L V+D + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 YTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAEI 253 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A ++ITNPTH+A+AL Y NDAPV+VAKG++L+A K+++ Sbjct: 254 RKKQRQISTRRMMQDLKKADVVITNPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKEE 313 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A + +IPI E LA++L+ + IPP Y+AVA+++ +Y Sbjct: 314 AEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVY 357 >gi|258621117|ref|ZP_05716151.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573] gi|262170893|ref|ZP_06038571.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] gi|258586505|gb|EEW11220.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573] gi|261891969|gb|EEY37955.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] Length = 376 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 191/361 (52%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D + +TE + ++++ A +G S+E + S ++ + L++F + G+++ Sbjct: 1 MAESDGQE-RTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFT 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L L + ++ DI + ++ L L++ + LF+ IG+ + I Sbjct: 60 AMQRLFSL----DREEIFDIGKLFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGIN 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFT 172 + P +++ G KR++ + + V +KS +K++LV + I S + + Sbjct: 116 -FSAEAAMPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQL 174 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 LD N ++HA + +++I + + +DI + Q ++LKM+KQE+KDE Sbjct: 175 SLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++ Sbjct: 231 YKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVI 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ Sbjct: 291 AKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|189911977|ref|YP_001963532.1| endoflagellar biosynthesis protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776653|gb|ABZ94954.1| Endoflagellar biosynthesis protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 444 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 177/358 (49%), Gaps = 17/358 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + +TE PS ++ + +GN P S E + +L L I + + Sbjct: 92 ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 151 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-------RIPVL 118 L + +L+ +S L+ P L + ++F I ++Q R Sbjct: 152 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 211 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P+FKRV + + L N +KS K++L+G I I ++ ++ +L + Sbjct: 212 RFDRISPNFKRV--------LPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGN 263 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++ K+++ L + + V D + ++ LK + E K E+K+ G Sbjct: 264 MGMMQAITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSG 323 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++KNR+ +AR ++ M+ +A ++ITNPTHY++AL Y + AP ++AKG+N Sbjct: 324 DPVMKNRRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENR 383 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354 +A ++R+IA E+++PI E P AR L+ QV + IP F++AV Q++ + + KK+ Sbjct: 384 LALEIRRIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 441 >gi|170722841|ref|YP_001750529.1| flagellar biosynthesis protein FlhB [Pseudomonas putida W619] gi|169760844|gb|ACA74160.1| flagellar biosynthetic protein FlhB [Pseudomonas putida W619] Length = 380 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/360 (29%), Positives = 187/360 (51%), Gaps = 18/360 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + + L F + Sbjct: 1 MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVA-VTLAGAGGLLAFGGHLAETLL 59 Query: 61 DLHVLLASATQRKLEDISHI-VFLLT--HLSLSASRLVIPGLLLFMM-----FGIGSYLI 112 ++ L S T+ + D + FLL +++ A + V+ +LLF++ +G +L Sbjct: 60 EMMRLNFSLTREVIVDEGAMGAFLLASGKMAIWAVQPVL--ILLFVVAFIAPIALGGFL- 116 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 + + ++P F R++ GIKR++S+N L +K+ K I++ + + L + Sbjct: 117 -----FSGSLLQPKFSRMNPLAGIKRMFSMNALTELLKAVAKFIVILVVALVVLANDRQA 171 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +L + + H+ V + + + + D+ + Q + KLKM+KQE+KDE Sbjct: 172 LLAIANEPLDQAIIHSVQVVGWSALWMSAGLLLIAAADVPFQLWQTHKKLKMTKQEVKDE 231 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVL 291 K S G P +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L Sbjct: 232 YKDSEGKPEVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLL 291 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + IA K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ Sbjct: 292 LAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQ 351 >gi|323490157|ref|ZP_08095377.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2] gi|323396205|gb|EGA89031.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2] Length = 362 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 186/353 (52%), Gaps = 17/353 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + +K +++ +G S E + I+ ++ L S G + + L + Sbjct: 15 EKTEKATPQKRQESKRKGQVAKSPEVAAAMIIIGGIVLL---NSMGGWMMDRILAIYRIH 71 Query: 69 ATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 TQ +I+ I L ++++A L++P +L+ M+FG IQ + + + Sbjct: 72 FTQYISWEITPATIRTLFEQMAMNAFLLMLPIMLVGMIFGFLGNFIQVGAIFTADPIMAK 131 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTMLDFISANPHS 183 F+R+ +G KRI+++ LV KS +KI ++G L + FT+ + S Sbjct: 132 FERLDPIKGAKRIFALRALVELGKSLLKIAIIGGAAFGVLWVGKDELFTL------SQKS 185 Query: 184 ILYHAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I Y F V M L L + +L+VLD + +++ +KMSKQ+IKDE K++ G+P Sbjct: 186 IGYSFSFIGSLVFQMGLIAGLILLSLSVLDYIYQKYEFEKGIKMSKQDIKDEYKKAEGDP 245 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK++ K R ++M++ A ++ITNPTHYA+A++Y +APV++A G++ +A Sbjct: 246 LIKSKIKDKQRQMSMNRMIQDLPSADVLITNPTHYAIAIKYDAETMEAPVIIAMGKDYLA 305 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++ A E I E LAR+L+ QV + +P + AVA+++ IY K Sbjct: 306 LKIKEKAKEFGIVTMENKPLARALYAQVEVGDVVPEELFLAVAEVLAYIYRLK 358 >gi|152990384|ref|YP_001356106.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2] gi|151422245|dbj|BAF69749.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2] Length = 351 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 192/351 (54%), Gaps = 15/351 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-FSPGIYSVTSDLHVLLA 67 +KTE + ++ E A EG S++ + ++++ ++++LF + P Y +L + + Sbjct: 6 SKTEKATPRRREKAREEGQVAKSQDIPISATLI--VVFMLFLAYIPFAYKKLYELFMFIF 63 Query: 68 SATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + ++ I++L+ L IP L ++ G+ S + Q +L + P Sbjct: 64 ADPLYNIPQYNYSIIYLVMEF---MGYLTIPFFLALLITGVVSNIAQIGFLLTFKSMVPK 120 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +++ G+KR++S+ L +K+ +K+I TI++ L + F + D + Sbjct: 121 LEKIDPIAGLKRLFSLKTLFELVKNILKLI-AATIVSYFLVQ--FLLRDVFQYATTTPYK 177 Query: 187 HAFFTVRKVLIMILLFIATLTV----LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 A V+ LIMIL F A L++ +D + ++ +KMSK E+K+E KQ GNP + Sbjct: 178 DAVLLVKYTLIMILGF-AILSIPIAAIDFFFRKFEFEENIKMSKHEVKEEHKQMEGNPQV 236 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+ + R +++M +A ++ITNP H+A+AL+Y + + AP +VAKG++ +A K Sbjct: 237 KSEIRKRMREMSMNRIMAEVPKADVVITNPVHFAVALKYEKEKMHAPKVVAKGKDYLALK 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA EH +PI E P LAR++++ ++ IP YKA+A++ K++ ++ Sbjct: 297 IKEIAKEHGVPIEENPPLARAIYQACDVDEYIPENLYKAIAKIFAKVFKRQ 347 >gi|295097231|emb|CBK86321.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 381 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/369 (28%), Positives = 176/369 (47%), Gaps = 40/369 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D KTE P+ + + A EG P SRE + + +L V Sbjct: 1 MSEESESD-KTEDPTPHRKQKAREEGQVPRSRELTTLAMLL----------------VGW 43 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLS--------ASRLVIPGLLLFMMFGIGSYLI 112 L V S +LE I H L + A+ L+ L + F G Y+ Sbjct: 44 GLIVGAGSHLATQLESILHNGLTFDRLLIRDPQNMLHRAASLLSMAFLAILPFAGGLYVT 103 Query: 113 -----QRIPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 I LN + +K + K+++ GIKR++S + +KS +K++L T + Sbjct: 104 AITAPSIIGGLNASSKALKVNLKKLNPVTGIKRLFSAQMVSEMIKSILKVLLAATGGGLF 163 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSK 221 L N ++ + + L A + +LI +L++ + D+ + + K Sbjct: 164 LLLNKSRFINLM----YEPLGGALNDISNLLIGCMLYVILSLIPMVAFDVIYQLWSNFKK 219 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 L+MS+QEIKDE K G+P IK R + I R + +MM A +++ NPTHY++AL+Y Sbjct: 220 LRMSRQEIKDEFKNQEGDPHIKGRVRQIQRQMAQSRMMAEVPTADVVVNNPTHYSVALKY 279 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 + AP++VA G LIA ++R++A E+ +P+ E P LAR+L++ +P Y A Sbjct: 280 QEGTMGAPIVVASGSGLIALRIREMAEENRVPMLEAPPLARALYRHCEPGQPVPGELYNA 339 Query: 342 VAQLIYKIY 350 VA+++ +Y Sbjct: 340 VAEVLAWVY 348 >gi|182412230|ref|YP_001817296.1| type III secretion exporter [Opitutus terrae PB90-1] gi|177839444|gb|ACB73696.1| type III secretion exporter [Opitutus terrae PB90-1] Length = 367 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/354 (28%), Positives = 179/354 (50%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D D KTE PS KK+ +A++ G S E ++ ++A L L F V + Sbjct: 1 MAEHD-QDQKTEQPSEKKLSEAMDRGQFARSPELAVLFLLVAVLAALSFSVREASREVAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + K+E + I L++ + P LL ++ + + +Q L Sbjct: 60 YAASLFSRFGSMKVEHDT-IRAYFGEAMLTSGTALAPLLLACVVAALLAGGVQSGFRLTP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +R++ EG KR+++ + LV +K++ +G + + M+D + + Sbjct: 119 EAFGFKPERLNPVEGFKRVFNKSALVRAGVDLLKLVALGAALYLGARG---LMMDPLFSA 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLD-IGWSYHQW--YSKLKMSKQEIKDEIKQSY 237 P Y F + + I L V+ I +SY ++ + L M++QE+KDE K Sbjct: 176 PVEAAYLGQFLTDATYVFLSRLILALGVITAISYSYEKFKTHRDLMMTRQELKDEHKNQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+ K + +AR + +MM A A +++TNPTH+A+AL+Y + ++ APV++AKG+N Sbjct: 236 GSSQAKMAMRRMARRLTQRQMMSAVPTADVVVTNPTHFAVALKYERGKDAAPVVLAKGEN 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A++++ IA EH +P+ E +AR LF + AIPP Y+AVA ++ +Y Sbjct: 296 RFAQRIKAIAAEHGVPMVENKPVARLLFSMGKVGEAIPPELYQAVASILAVVYR 349 >gi|289810262|ref|ZP_06540891.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 247 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 125/215 (58%) Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++S +K+ +K LVG + L ++ M+ ++ +P + +A V ++ Sbjct: 1 MFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALL 60 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 ++L + + D+ + KL+MS+Q+I+DE K+S G+P +K + + + R+ + +M Sbjct: 61 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRM 120 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 ME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA ++R+I EH +P E P Sbjct: 121 MEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAP 180 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L++ I IP Y AVA+++ ++ K Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215 >gi|317014180|gb|ADU81616.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Gambia94/24] Length = 358 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E F +LA L+ + FF I+ V S++ Sbjct: 2 AEEEKTELPSTKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L+ L++P L++ M+ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTVL-------DIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L I++L L D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|37680652|ref|NP_935261.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus YJ016] gi|37199401|dbj|BAC95232.1| flagellar biosynthesis pathway, component FlhB [Vibrio vulnificus YJ016] Length = 376 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 188/356 (52%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ Sbjct: 1 MAESDG-QERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIPVLN 119 + L S ++ ++ D S + + + + ++ L F+ IGS + I + Sbjct: 60 AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGIS-FS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P +++ GIKR++ + + V +KS +K+ LV T + I L + L +S Sbjct: 118 VEAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALV-TGVAIYLIQASQEDLIQLSL 176 Query: 180 N--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + P +I +HA + +++I + + +DI + Q +LKM+KQE+KDE K + Sbjct: 177 DVYPQNI-FHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P +K R + + R + +MM A +I+TNP H+++ALRY Q + AP++VAKG + Sbjct: 236 GKPEVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 296 HMAMKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351 >gi|153213288|ref|ZP_01948700.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587] gi|229528868|ref|ZP_04418258.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)] gi|124116088|gb|EAY34908.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587] gi|229332642|gb|EEN98128.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)] Length = 376 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 185/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE ++++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDGQE-RTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|332701286|ref|ZP_08421374.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str. Walvis Bay] gi|332551435|gb|EGJ48479.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str. Walvis Bay] Length = 357 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 193/350 (55%), Gaps = 15/350 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE+ ++K+ + + +EGN P S+E S + IL L+ L + ++ L AS Sbjct: 7 SKTESATAKRRKKSRDEGNVPRSQELSKLAVILVGLLVLRLLIG----FIGDEMKSLFAS 62 Query: 69 --ATQRKLEDISHIVFLL-THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL---NH 122 + LE + +++L L++ +++++P +LF + + +++I RI V L Sbjct: 63 FLSNWGNLELTTEGLYILFVDLAVHLAKMLLP--VLFSL-ALAAFVINRIQVGQLWTTKV 119 Query: 123 VKPSFKR-VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP ++ V++ GIKR I++++ V +S + V I L +L S Sbjct: 120 FKPKMEKFVNIVGGIKRLIFNVDAFVRLARSILGAAAVAIGPIILLRHEMNNLLPLFSQT 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I + K+++ L+ + T+ V+D ++ + KLKM+K E+KDE KQ+ G+P Sbjct: 180 TEGIAVYMLTVSYKMVLYSLIPMITVAVIDTVYTRWDYEEKLKMTKDEVKDERKQAEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ RQK + +M+ +A +++TNPTH+A+AL Y ++ AP++VAKG + +A Sbjct: 240 KIRQRQKQKMMAMSMSRMLHNVPKADVVVTNPTHFAVALSYDLSKAPAPLVVAKGADHMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K++R++A E +PI E LAR+L+ QV + IP YKAVA ++ +++ Sbjct: 300 KRIREMAREAGVPIRENKPLARALYDQVEVGDIIPEDLYKAVATILARLH 349 >gi|254446395|ref|ZP_05059871.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235] gi|198260703|gb|EDY85011.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235] Length = 369 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 191/353 (54%), Gaps = 8/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D D+KTE P++K++ D +GN P ++E + ++LA L+ ++F + S Sbjct: 1 MADTD-QDSKTEKPTAKRLTDEQEKGNFPQAQEVGVTFTLLAGLLVVMFSGQTIASNAFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L ++I + + + RL P +L M+ GI + +Q Sbjct: 60 FSSSILGNLSSIDLS-TNNISYFFNEVIVVLGRLAAPFMLAGMVSGIIAGGLQTRFRFTP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F +++ G K++ S + V F +K+ +G I+ +++ + + D I Sbjct: 119 KALGIKFNKLNPINGAKQLVSKDVFVRFGIDLLKMGAMGLILWVAMRK---IIKDPIFYA 175 Query: 181 PHSILYHAFF---TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P I++ F T+ V I + + + + ++ W + K+KM+K+E+K E K Sbjct: 176 PIDIVHVGMFITDTLVYVFIRLTIAVGLIAIISYLWQSKKTMDKMKMTKEEVKQERKDQD 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 +P I+ + +A ++ +M++ + A +++TNPTHYA+AL+Y + + AP+++AKG+N Sbjct: 236 MSPEIRKARMQMAMRLMQGQMLDEVATADVVVTNPTHYAVALKYERGVDSAPMVLAKGEN 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A++++++A EH +P+ E +AR L+K + +AIP +++VA+++ +Y Sbjct: 296 AFAQRIKEVAAEHGVPVVENKMVARMLYKVAQVGAAIPMEMFQSVAEILAFVY 348 >gi|15642119|ref|NP_231751.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674451|ref|YP_001217641.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O395] gi|153818990|ref|ZP_01971657.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457] gi|153822901|ref|ZP_01975568.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33] gi|227082245|ref|YP_002810796.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2] gi|229507795|ref|ZP_04397300.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286] gi|229511968|ref|ZP_04401447.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33] gi|229519104|ref|ZP_04408547.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9] gi|229607340|ref|YP_002877988.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236] gi|254849205|ref|ZP_05238555.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10] gi|298497858|ref|ZP_07007665.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757] gi|9656670|gb|AAF95265.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510485|gb|EAZ73079.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457] gi|126519597|gb|EAZ76820.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33] gi|146316334|gb|ABQ20873.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395] gi|227010133|gb|ACP06345.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2] gi|227014016|gb|ACP10226.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395] gi|229343793|gb|EEO08768.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9] gi|229351933|gb|EEO16874.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33] gi|229355300|gb|EEO20221.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286] gi|229369995|gb|ACQ60418.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236] gi|254844910|gb|EET23324.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10] gi|297542191|gb|EFH78241.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757] Length = 376 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 184/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE + ++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDGQE-RTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|229513771|ref|ZP_04403233.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21] gi|229348952|gb|EEO13909.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21] Length = 376 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 185/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE ++++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDGQE-RTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|239628943|ref|ZP_04671974.1| flagellar export protein [Clostridiales bacterium 1_7_47_FAA] gi|239519089|gb|EEQ58955.1| flagellar export protein [Clostridiales bacterium 1_7_47FAA] Length = 353 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/359 (27%), Positives = 184/359 (51%), Gaps = 21/359 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD---LHV 64 D KTE + K+ +D +GN S + + S+L L + L +P +Y D + + Sbjct: 4 DEKTEKATPKRRQDERKKGNVFQSNDVAAVCSML-VLFHSLKALAPHMYRNFRDAMYMFM 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 +A+ + ++ + + L S L P L + ++ + Q +++ +K Sbjct: 63 GMAADSDSFHQEAGREMLVKAMLLFLESAL--PLLFIGVLTAVAVTFFQTRMAFSMDVLK 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 +R+S +G KR++SI ++V +K+ +KI ++G ++ + L + + Sbjct: 121 FKMERISPLKGFKRMFSIRSVVELIKALIKITILGWVVYVFLKGRMEELSRLMEGTVEGA 180 Query: 185 LYHAFFTVRKVLIMI------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L FT V+ ++ +F+A++ L W Y + L+MSKQEIK+E KQ+ G Sbjct: 181 L---IFTGNTVISLVDTVGVAFIFLASMDYLYQWWEYEK---NLRMSKQEIKEEYKQTEG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK + + R +MM+ +A +I+ NPTHYA+AL Y N APV++AKG + Sbjct: 235 DPQIKGKIREKQRQMASMRMMQNVPKADVIVRNPTHYAVALGYDADRNRAPVVLAKGADH 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKKI 354 +A K+ ++ + + I E+ LAR L+ V ++ IP +Y+ VA++ +YK+ KK+ Sbjct: 295 LALKIVEVGEANGVYILEDRPLARGLYASVEVDMEIPEEYYQTVAKILAFVYKLNDKKL 353 >gi|254478867|ref|ZP_05092231.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum DSM 12653] gi|214035180|gb|EEB75890.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum DSM 12653] Length = 360 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 177/344 (51%), Gaps = 2/344 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67 KTE + K+ ++A +G SRE + I+ + + F + V + L LL Sbjct: 12 EKTEPATPKRRQEARKKGQVFQSREITSALVIVTGFLMIHLFLQSFLGRVGNLLKFLLIT 71 Query: 68 -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S + + + I + ++ + +P +L + S Q V + Sbjct: 72 YSGANDDVFNTAGIWKIFYYMVNQVVLISVPIMLAIFAVSLISTYFQVGFVFTAEPLTLK 131 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F+R++ EG KRI+S LV +KS K++++ I+ L Y + + + +L Sbjct: 132 FERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLLR 191 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + I I + + L V+D + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 192 YTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAEI 251 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A ++I NPTH+A+AL Y NDAPV+VAKG++L+A K+++ Sbjct: 252 RKKQRQISTRRMMQDLKKADVVIINPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKEE 311 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A + +IPI E LA++L+ + IPP Y+AVA+++ +Y Sbjct: 312 AEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVY 355 >gi|254779257|ref|YP_003057362.1| flagellar biosynthesis protein FlhB [Helicobacter pylori B38] gi|254001168|emb|CAX29127.1| Flagellar biosynthesis and export/adhesin [Helicobacter pylori B38] Length = 358 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 185/353 (52%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E +LA L+ + FF I+ V S++ Sbjct: 2 AEEEKTELPSTKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L+ L++P L++ M+ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLTKDTFLLLLPILIILMVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L I++L +D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|239826631|ref|YP_002949255.1| flagellar biosynthesis protein FlhB [Geobacillus sp. WCH70] gi|239806924|gb|ACS23989.1| flagellar biosynthetic protein FlhB [Geobacillus sp. WCH70] Length = 360 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 192/355 (54%), Gaps = 21/355 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + +K ++ +G +++ A + ++I+ +++L+ +F G + LH + S Sbjct: 14 EKTEKATPRKRQEVREKGQ--VAKSADINTAIVMLVVFLVLYFL-GTFYKEKLLHFMYQS 70 Query: 69 ATQRKLEDISHIVFLLTHLSLS----ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 Q D++ + + LS++ + LV P ++ + +Q + +K Sbjct: 71 FEQYARVDLT--IDSVHRLSITWLKNMAMLVAPIFFAAVIAACLANFLQVGFLFTTEPLK 128 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 + R+ +G KR+ S+ +V +KS +KI +VG ++T +L +F + +S SI Sbjct: 129 MKWNRLDPVQGFKRMISLRAIVELLKSILKISVVG-LVTFALL--WFQIDHILSLTTKSI 185 Query: 185 LYH----AFFTVRKVLIM--ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 A T + L LLF+A + D + + ++MSKQ+IKDE K++ G Sbjct: 186 STTLSSLASLTAKMGLYASSALLFLA---IFDYLYQRFDFEKNIRMSKQDIKDEYKKTEG 242 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK++ K R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + Sbjct: 243 DPLIKSKIKQKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPMVVAKGVDY 302 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K++++A EH++ E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 303 VALKIKQLAKEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357 >gi|188574349|ref|YP_001911278.1| type III secretion system protein HrcU [Xanthomonas oryzae pv. oryzae PXO99A] gi|50428352|dbj|BAD29989.1| HrcU [Xanthomonas oryzae pv. oryzae] gi|188518801|gb|ACD56746.1| HrcU [Xanthomonas oryzae pv. oryzae PXO99A] Length = 359 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65 + KTE P+ KK+ DA +G P+S + + + + L L S G Y V + L Sbjct: 3 EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFVDH-MRALTR 58 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 59 IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I Sbjct: 119 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDIS 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E K+S G+P IK Sbjct: 179 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + AIP ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 335 >gi|254517020|ref|ZP_05129078.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3] gi|219674525|gb|EED30893.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3] Length = 384 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/360 (26%), Positives = 187/360 (51%), Gaps = 20/360 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +TE P+ ++ E+A +G P SRE +++L+ LI + + G V + Sbjct: 1 MAEEQTGQERTEQPTERRKEEARRKGQVPRSRE---LNTMLSLLITGVGLWVLGGGLVDN 57 Query: 61 DLHVLLA--SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L + A S + + D + H+ +SA + P + ++ + LI Sbjct: 58 LLAITSAGFSVDRAAVFDTQQLPVHFMHMVISALLALAPLFAVTVVAALAGPLIMGGWSF 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITISLTENYFTMLD 175 +L + +++ +G+ R++S+ L K+ +K +L V ++ +S T+ Sbjct: 118 SLEAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMGVAYLMIMSFERQILTLSA 177 Query: 176 FI----SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 SA ++L A + +++I++F D+ + + +L+M++QE++D Sbjct: 178 LTPGEASARVVTMLVTALIILSSAMVLIVMF-------DVPFELWNFNKQLRMTRQEVRD 230 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E+K++ G P +K R +++ R + +MM+ A ++ITNPTHY++AL Y + AP + Sbjct: 231 EMKETDGRPEVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHYSIALSY-SDGSGAPRV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG++LIA ++R IA EH +P++E P LAR+L+ + IP Y AVA+++ ++ Sbjct: 290 VAKGRDLIALQIRTIAQEHEVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQ 349 >gi|88704274|ref|ZP_01101988.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71] gi|88701325|gb|EAQ98430.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71] Length = 384 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 186/370 (50%), Gaps = 40/370 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +TE P+ ++ E+A +G P SRE +++L+ LI + + G S+ Sbjct: 1 MAEEQTGQERTEPPTERRKEEARKKGQVPRSRE---LNTMLSLLITGVGLWVLG-GSLVD 56 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRL---------VIPGLLLFMMFGIG 108 DL + S + D + H++ SA+ L V+ L ++ G Sbjct: 57 DLFAITISGFSVDRAAAFDAEQLPVRFMHMA-SATLLALAPLFAVTVVAALAGPLLMGGW 115 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITIS 165 S+ +Q + L + P +G+ R++S+ L K+ +K +L V ++ ++ Sbjct: 116 SFSVQAM-AFKLEKLDPV-------KGLGRVFSLKGLAELAKALIKFLLLMAVAYLMIMA 167 Query: 166 LTENYFTMLDFISANPHS----ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 + T+ S +L A + +++I++F D+ + + + Sbjct: 168 FERDILTLSALTPGEASSRVVSMLVIALIVLSSAMVLIVMF-------DVPFELWNFNKQ 220 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 L+M++QE++DE+K++ G P +K R +++ R + +MM+ A ++ITNPTH ++AL Y Sbjct: 221 LRMTRQEVRDEMKETDGRPEVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHVSIALSY 280 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 AP +VAKG++L+A ++R IA EH++P++E P LAR+L+ + IP Y A Sbjct: 281 ADGAG-APRVVAKGRDLLALQIRTIATEHDVPLYEAPPLARALYASTEVGDEIPGDLYLA 339 Query: 342 VAQLIYKIYH 351 VA+++ ++ Sbjct: 340 VARVLAYLFQ 349 >gi|160939623|ref|ZP_02086971.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC BAA-613] gi|158437414|gb|EDP15178.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC BAA-613] Length = 353 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 183/355 (51%), Gaps = 9/355 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHV 64 A + KTE + K+ +D +GN S + + S+L L + L +P +Y S +H+ Sbjct: 2 AAEEKTEKATPKRRQDERKKGNVFQSNDVAAVCSLL-VLFHSLKALAPMMYESFGECMHL 60 Query: 65 LLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 + A+ + ++ +F+ L + L P L + ++ + Q + + Sbjct: 61 FFSYASSPDIFWQEGGKGLFMKAVLVFFKASL--PLLFIGVLTAVIVTFFQTRMAFSWDV 118 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K F R+S +G KR++S+ +++ +KS +KI ++G ++ L + + Sbjct: 119 LKFKFDRISPLKGFKRMFSLRSVIELLKSLIKITVLGWVVWFFLKGRLTELTGLMEGTVA 178 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S L + TV ++ + + L +D + + ++ L+MSKQEIK+E KQ+ G+P I Sbjct: 179 SALIYVGNTVVSLVDTVGIAFVFLGAVDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDPQI 238 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + + R +MM+ A ++I NPTH+A+AL Y +N APV++AKG + +A K Sbjct: 239 KGKIREKQRQMASRRMMQNVPNADVVIRNPTHFAVALGYDSGKNRAPVVLAKGADHLALK 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKKI 354 + ++A + I E+ LAR L+ V ++ IP +Y+ VA++ +YK+ K + Sbjct: 299 IVEVAEASGVYIMEDRPLARGLYDTVEVDMEIPEEYYQTVAKILAFVYKLQKKDM 353 >gi|54308128|ref|YP_129148.1| flagellar biosynthesis protein FlhB [Photobacterium profundum SS9] gi|46912554|emb|CAG19346.1| putative flagellar biosynthetic protein FlhB [Photobacterium profundum SS9] Length = 376 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/358 (26%), Positives = 194/358 (54%), Gaps = 12/358 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D + +TE + +K+E A +G S+E + + ++ + L+++ G+ + Sbjct: 1 MSDSDGQE-RTEDATPRKLEQAREKGQVARSKELASVAVLVMGAVSLIWY-GEGLGKALA 58 Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 ++ + S ++ ++ D+S + +LT + L + ++LF+ IG+ + + + Sbjct: 59 EIMTQMFSLSREEIYDLSRLFSIMLTAIWSVVFPLGLVLVVLFLAALIGAAGLGGVS-FS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P +++ G KR++ + + V +KS +K++LV + + Y ++ DF+ Sbjct: 118 VEAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVAGVAAYLM---YSSLNDFLLL 174 Query: 180 N----PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + P +I +HA + + +++I + + +D+ + Q +LKM+KQE+KDE K Sbjct: 175 SLEIYPSNI-FHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKD 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G P +K R + + R + +MM +A +II NP H+++ALRY + AP+++AKG Sbjct: 234 TEGKPEVKGRIRMLQREMAQRRMMADVPQADVIIINPEHFSVALRYDPKLDSAPIVIAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + A K+R+IA +HNI I P LAR+++ + IP + AVAQ++ I+ K Sbjct: 294 VDHTALKIREIANKHNIDIVSAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351 >gi|312111661|ref|YP_003989977.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1] gi|311216762|gb|ADP75366.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1] Length = 360 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 140/234 (59%), Gaps = 6/234 (2%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K ++ R+ +G+KRI S+ LV +KS +KI +VG + L +L + + Sbjct: 127 LKINWSRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLE 186 Query: 183 SILYH-AFFTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + L A TV+ L LLF+A + D + ++ ++MSKQ+IKDE K++ G+ Sbjct: 187 ATLSSLASLTVKMGLYASFALLFLA---IFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGD 243 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK+R K R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + + Sbjct: 244 PLIKSRIKQKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYV 303 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K++++A EH++ E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 304 ALKIKQLAKEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357 >gi|295399827|ref|ZP_06809808.1| flagellar biosynthetic protein FlhB [Geobacillus thermoglucosidasius C56-YS93] gi|294978230|gb|EFG53827.1| flagellar biosynthetic protein FlhB [Geobacillus thermoglucosidasius C56-YS93] Length = 360 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 140/234 (59%), Gaps = 6/234 (2%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K ++ R+ +G+KRI S+ LV +KS +KI +VG + L +L + + Sbjct: 127 LKINWSRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLE 186 Query: 183 SILYH-AFFTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + L A TV+ L LLF+A + D + ++ ++MSKQ+IKDE K++ G+ Sbjct: 187 ATLSSLASLTVKMGLYASFALLFLA---IFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGD 243 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK+R K R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + + Sbjct: 244 PLIKSRIKQKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYV 303 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K++++A EH++ E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 304 ALKIKQLAKEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357 >gi|15645389|ref|NP_207563.1| flagellar biosynthesis protein FlhB [Helicobacter pylori 26695] gi|3023763|sp|P56416|FLHB_HELPY RecName: Full=Flagellar biosynthetic protein flhB gi|2313898|gb|AAD07819.1| flagellar biosynthetic protein (flhB) [Helicobacter pylori 26695] Length = 358 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E +LA LI + FF I+ V S++ Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L+ L++P L++ ++ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L I++L +D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKNKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336 >gi|297582018|ref|ZP_06943937.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385] gi|297533713|gb|EFH72555.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385] Length = 376 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 184/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE + ++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDGQE-RTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYNTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|254506872|ref|ZP_05119011.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16] gi|219550157|gb|EED27143.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16] Length = 376 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/362 (27%), Positives = 188/362 (51%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D + +TE + ++++ A +G S+E + S ++ + L++F + G+Y+ Sbjct: 1 MAESDGQE-RTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVALMWFGDSLARGLYT 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V L L + E H+ L S ++ L+L +F + Sbjct: 60 VMERLFSL------SREEIFDHVKLFDIALGSLTSLILPLILILVTLFVAAVAGAAGVGG 113 Query: 118 LN--LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172 ++ + P +++ G+KR+ I + V +KS +K+ LV + + + E+ F Sbjct: 114 ISFSVEAAMPKLSKMNPLSGLKRMVGIQSWVELIKSILKVALVSGMAFYLINAAKEDLFQ 173 Query: 173 M-LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + +D N ++HA + +++I + + +DI + Q ++LKM+KQE+KD Sbjct: 174 LSMDVFPQN----IFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K++ G P +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++ Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNTDRAPIV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + +A K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ Sbjct: 290 VAKGTDHMALKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|16082735|ref|NP_395181.1| needle complex export protein [Yersinia pestis CO92] gi|31795273|ref|NP_857735.1| needle complex export protein [Yersinia pestis KIM] gi|31795476|ref|NP_857930.1| needle complex export protein [Yersinia pestis KIM] gi|45478537|ref|NP_995364.1| putative type III secretion protein YscU [Yersinia pestis biovar Microtus str. 91001] gi|51593916|ref|YP_068483.1| yscU; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108793657|ref|YP_636807.1| type III secretion protein [Yersinia pestis Antiqua] gi|149192692|ref|YP_001293924.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|165927774|ref|ZP_02223606.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. F1991016] gi|165940072|ref|ZP_02228606.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. IP275] gi|166011729|ref|ZP_02232627.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. E1979001] gi|166214469|ref|ZP_02240504.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. B42003004] gi|167401916|ref|ZP_02307402.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422435|ref|ZP_02314188.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422465|ref|ZP_02314218.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422883|ref|ZP_02314636.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426855|ref|ZP_02318608.1| type III secretion appartus protein YscU [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897581|ref|YP_001874692.1| YscU/HrpY family type III secretion protein [Yersinia pseudotuberculosis PB1/+] gi|229896863|ref|ZP_04512023.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|229900218|ref|ZP_04515354.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491102|ref|ZP_06208174.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM D27] gi|294496841|ref|YP_003560538.1| needle complex export protein [Yersinia pestis Z176003] gi|322836573|ref|YP_004210069.1| type III secretion appartus protein YscU [Yersinia pestis Java 9] gi|57015240|sp|P69986|YSCU_YERPE RecName: Full=Yop proteins translocation protein U gi|57015241|sp|P69987|YSCU_YERPS RecName: Full=Yop proteins translocation protein U gi|475126|gb|AAA27681.1| yscU [Yersinia pseudotuberculosis] gi|2996233|gb|AAC62556.1| Yop proteins translocation protein U homolog [Yersinia pestis KIM 10] gi|3822064|gb|AAC69784.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832467|emb|CAB54924.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357159|gb|AAS58555.1| putative type III secretion protein YscU [Yersinia pestis biovar Microtus str. 91001] gi|51591613|emb|CAF25417.1| yscU; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108782204|gb|ABG16259.1| type III secretion protein [Yersinia pestis Antiqua] gi|148872350|gb|ABR14840.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|165911982|gb|EDR30625.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. IP275] gi|165920210|gb|EDR37511.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. F1991016] gi|165989336|gb|EDR41637.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. E1979001] gi|166204362|gb|EDR48842.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. B42003004] gi|166958173|gb|EDR55194.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958672|gb|EDR55693.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958702|gb|EDR55723.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048644|gb|EDR60052.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054154|gb|EDR63981.1| type III secretion appartus protein YscU [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700607|gb|ACC91235.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis PB1/+] gi|229686738|gb|EEO78818.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700134|gb|EEO88173.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|262363852|gb|ACY60572.1| needle complex export protein [Yersinia pestis D106004] gi|262364009|gb|ACY64346.1| needle complex export protein [Yersinia pestis D182038] gi|270334845|gb|EFA45624.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM D27] gi|294352429|gb|ADE66486.1| needle complex export protein [Yersinia pestis Z176003] gi|317374477|gb|ADV16652.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161347|gb|ADW67053.1| type III secretion appartus protein YscU [Yersinia pestis Java 9] Length = 354 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 180/338 (53%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI DA +G S+E + ++++ L +L S + S L +L Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEV-VSTALIVALSAMLMGLSDYYFEHFSKL--MLIP 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP K Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK++++ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + M E R+++++ NPTH A+ + Y + E P++ K + + +RKIA Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +PI + LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338 >gi|325109030|ref|YP_004270098.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM 5305] gi|324969298|gb|ADY60076.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM 5305] Length = 357 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 177/357 (49%), Gaps = 19/357 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D K+E P+ ++ +A N+GN S + + + +LA L+F + D+ Sbjct: 3 DDDQGEKSEDPTDQRRREARNQGNVAKSVDVNAAAIMLAATGGLMF--------LGPDIA 54 Query: 64 VLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 A +R LE D ++ ++ + + +P +LL ++ + + L Q Sbjct: 55 KGFAGLLRRYLEGPPVLELDRFMVMREFWNIFQAVAGFALPFMLLMLLTAVVANLAQIGV 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + ++R++ G +RI+S+ F S KI+ + + L + Sbjct: 115 LFTTEPLGFKWQRINPVSGFQRIFSVAAFAKFGTSVGKIVAMAGVACWFLYLKLPALQGM 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIK 234 + P IL + ++ + L + + +LD +S+ +W LKMSKQEI+DE+K Sbjct: 175 GQSEPSVILGTIGSVILELAFQLALAMLIIALLD--YSFQKWKHEQDLKMSKQEIRDEMK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P I+ R+K R K + A A +++TNPTH ++AL+Y T++ APV+VAK Sbjct: 233 NMDGDPHIRQRRKEAHRKLAEAKELNAVRDADVVLTNPTHLSVALKYDSTKHPAPVVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G IA ++R+IA E+N+PI E LAR+L++ V + IP Y+ +++ +Y Sbjct: 293 GAGEIAMRIREIARENNVPIIERKPLARALYRDVKVGHPIPAEMYEVFVEIMAYVYR 349 >gi|84621748|ref|YP_449120.1| type III secretion system protein HrcU [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|9711589|dbj|BAB07858.1| HrcU [Xanthomonas oryzae pv. oryzae] gi|84365688|dbj|BAE66846.1| HrcU protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 359 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65 + KTE P+ KK+ DA +G P+S + + + + L L S G Y V + L Sbjct: 3 EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFVDH-MRALTR 58 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 59 IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I Sbjct: 119 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVMWVGIRTLMPMIIGLAYETPLDIS 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E K+S G+P IK Sbjct: 179 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + AIP ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 335 >gi|312884898|ref|ZP_07744588.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC BAA-2122] gi|309367375|gb|EFP94937.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC BAA-2122] Length = 376 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 195/361 (54%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS---PGIYS 57 M+E+D + +TE + ++++ A +G S+E + S ++ I L++F S G++S Sbjct: 1 MAESDGQE-RTEEATPRRLQQAREKGQVARSKELASVSVLIIGAIALMWFGSFLAKGLFS 59 Query: 58 VTSDLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 V L L ++ ++ D+ + +L + L++ L+LF+ IG+ + I Sbjct: 60 VMGRLFDL----SREEIFDLDKLFDIILGSVGELVFPLLLILLVLFLAALIGAAGVGGIN 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173 ++ P + +++ G+KR+ + + V +KS +K+ LV + + ++ F + Sbjct: 116 -FSVEAAMPKWSKMNPLSGLKRMVGVQSWVELIKSILKVTLVSGMAFYLINDAKQDLFQL 174 Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 LD N ++HA + +++I + + +D+ + Q ++LKM+KQE+KDE Sbjct: 175 SLDVYPQN----IFHALDILLNFILLISCTLLLVAAIDVPFQIWQHANQLKMTKQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K++ G P +K R + + R + +MM +A +I+TNP HY++ALRY Q + AP++V Sbjct: 231 YKETEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHYSVALRYRQDTDKAPIVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + +A K+R++A EH+I I P L R+L+ + IP + AVAQ++ ++ Sbjct: 291 AKGTDHMALKIREVAREHDIYIVPAPPLTRALYFSTELEQEIPDGLFTAVAQILAYVFQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum ATCC 824] gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824] gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum EA 2018] Length = 610 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 191/361 (52%), Gaps = 24/361 (6%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE + K+ +A +G S+E L A L+ + F S G + + L V+ Sbjct: 260 ADSDKTEEATPKRKSEARKKGQVARSKEVPL----AATLVAITFIISLGGQTFFNGLGVM 315 Query: 66 LASATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + Q + D+ I+ + L+A + + + M+ GI + + Q + Sbjct: 316 MQTFFQSYIHSNLTELDLRRIIIFVI---LNAGKFIFMFGVPVMVVGIVANIAQTGWITT 372 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF--- 176 +KP K+++ G KRI+S+ +VN +K V + ++ + L NY + + Sbjct: 373 TEPIKPDLKKLNPISGFKRIFSMTTIVNLLKDLVVVAVLSVVGYKFLMSNYGDIANLNNL 432 Query: 177 -ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + P + L + ++ +++ +I++ IA D ++ +++ +KM+K E+K+E KQ Sbjct: 433 MVQYIPQAYLSYVI-SIFRIVALIMIVIAGF---DFVYNRYKYKKDMKMTKHEVKEEFKQ 488 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P IK +++ R + M+ AT++ITNPTH ++A++Y + + AP +VAKG Sbjct: 489 AEGDPEIKGKRRQRMREIVTRTMLSKVPDATVVITNPTHISVAIKYERGVDKAPTVVAKG 548 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHK 352 + A ++++IA E+N+PI E LAR +FK+V ++ IP Y+ VA+ L+YK+ K Sbjct: 549 ADRTALRIKEIAKENNVPIMENKPLARLIFKKVEVDEQIPAEMYQTVAEILALVYKLNKK 608 Query: 353 K 353 + Sbjct: 609 Q 609 >gi|89098625|ref|ZP_01171507.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911] gi|89086587|gb|EAR65706.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911] Length = 360 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 147/260 (56%), Gaps = 6/260 (2%) Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 P +L+ M+ G + +Q + + ++ +++ +G KRI+S+ +V +KS +KI Sbjct: 101 PVMLIAMIAGAAANYMQVGFLFSTEAIQFKLEKIDPIKGFKRIFSMRAIVELLKSVLKIG 160 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILY-HAFFTVRKVLIM--ILLFIATLTVLDIGW 213 VG + + L +L +P + L A TV+ L LLF L+VLD + Sbjct: 161 FVGAVTFVVLWMRIDEILMLSQKSPGAALIILASLTVQMGLFASAALLF---LSVLDYLY 217 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 + + ++MSKQ+IKDE K G+P+IK++ K R +MM+ A ++ITNPT Sbjct: 218 QKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKIKQKQREMAMSRMMQEVPNADVVITNPT 277 Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 H+A+AL+Y + + DAP +VAKG + +A+K++ IA E+ + E LAR+L+ Q I S Sbjct: 278 HFAIALKYDEEKQDAPYVVAKGADYVAQKIKYIAKENEVITVENRPLARALYSQTEIGST 337 Query: 334 IPPVFYKAVAQLIYKIYHKK 353 IP F+K VA+++ +Y K Sbjct: 338 IPEEFFKTVAEILAYVYRTK 357 >gi|229524122|ref|ZP_04413527.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis VL426] gi|229337703|gb|EEO02720.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis VL426] Length = 376 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 183/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 VLAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|308184555|ref|YP_003928688.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180] gi|308060475|gb|ADO02371.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180] Length = 358 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E +LA L+ + FF I+ V S++ Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L+ L++P L++ M+ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPLLIILMVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTVL-------DIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L I++L L D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336 >gi|121586826|ref|ZP_01676608.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80] gi|153803039|ref|ZP_01957625.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3] gi|153825586|ref|ZP_01978253.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2] gi|229522073|ref|ZP_04411490.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80] gi|254226357|ref|ZP_04919946.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51] gi|121548993|gb|EAX59032.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80] gi|124121437|gb|EAY40180.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3] gi|125621107|gb|EAZ49452.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51] gi|149740737|gb|EDM54836.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2] gi|229340998|gb|EEO06003.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80] Length = 376 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 183/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|121727196|ref|ZP_01680363.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52] gi|153828614|ref|ZP_01981281.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39] gi|262191369|ref|ZP_06049559.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93] gi|121630441|gb|EAX62834.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52] gi|148875885|gb|EDL74020.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39] gi|262032744|gb|EEY51292.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93] Length = 376 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 183/365 (50%), Gaps = 26/365 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F Sbjct: 1 MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112 L L A QR E +F L L L++ LF+ IG+ + Sbjct: 52 ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168 I + P +++ G+KR++ + + V +KS +K++LV + I S + Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + LD N ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346 Query: 349 IYHKK 353 ++ K Sbjct: 347 VFQLK 351 >gi|167838295|ref|ZP_02465154.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis MSMB43] Length = 401 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 182/356 (51%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ +L+ Y + S + Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGE 55 Query: 61 DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L ++ +A + D + ++ LSL + P L L + + + + + Sbjct: 56 HLRTMMRAAFSFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMALGGWL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ + F R++ G+ RI+SI + S K ++VG I I++ + +L Sbjct: 116 VSTKTFELKFDRLNPVTGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLA 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ Sbjct: 176 TQPLDAALAGALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + R+ R +MM A +++TNPT +A+AL+Y E AP +VAKG N Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTRFAVALKYTDGEMRAPKVVAKGVN 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R++A EH +P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 296 LVAARIRELAAEHRVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351 >gi|10955567|ref|NP_052408.1| YscU [Yersinia enterocolitica] gi|332163589|ref|YP_004424931.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|4324354|gb|AAD16831.1| YscU [Yersinia enterocolitica W22703] gi|318608194|emb|CBY78168.1| type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667819|gb|ADZ44462.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 354 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 180/338 (53%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI DA +G S+E + ++++ L +L S + S L +L Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEV-VSTTLIVALSAMLMGLSDYYFEHLSRL--MLIP 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP K Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK++++ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + M E R+++++ NPTH A+ + Y + E P++ K + + +RKIA Sbjct: 241 FHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +PI + LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338 >gi|212637760|ref|YP_002314285.1| flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3] gi|212559244|gb|ACJ31698.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3] Length = 393 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/350 (27%), Positives = 183/350 (52%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ +KTE + +K++ A +EG P S++ + + I+ C + +L + I + + Sbjct: 17 MSNKDSGQSKTEQATPQKLKKAKSEGQVPRSKDLASSALIIGCSL-MLTTSADWIAAKVA 75 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T+ +L++ ++ L L ++ P L+ + + + + P+ N Sbjct: 76 KMTRTNMSFTKAQLDEPGMMMRHLGQSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 135 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ GI R+ S+ +LV +KS +KI+L+ I+ + L +N T+L F Sbjct: 136 KNAAFKYSRIDPIAGIGRMASVKSLVELVKSILKIVLLMGIMWLFLEKNLQTLLSFNQLP 195 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + L + +T +D+ + Y +++LKMS QE+KDE KQ G P Sbjct: 196 VDEAVSKGIEMLSLGMFFLGLGLLLITFIDVPYQYWHHHNELKMSLQEVKDEHKQQDGKP 255 Query: 241 IIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 IK + Q+ I+RSR + +A +++ NPTHYA+AL+Y + DAP ++ KG Sbjct: 256 EIKAKIRQMQQRISRSRAD----ISVPKADVLLVNPTHYAVALKYDIDKADAPYVLTKGT 311 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +A MR++A H++ + E P L R+++ ++ IP + A+A ++ Sbjct: 312 DELALHMREVAKRHDVEVIELPPLTRAIYYSTKVDQQIPAALFIAIAHVL 361 >gi|28373013|ref|NP_783682.1| YscU [Yersinia enterocolitica] gi|32470295|ref|NP_863530.1| YscU [Yersinia enterocolitica] gi|122815819|ref|YP_001004085.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579353|gb|AAK69230.1|AF336309_25 YscU [Yersinia enterocolitica] gi|23630585|gb|AAN37541.1| YscU [Yersinia enterocolitica] gi|121663693|emb|CAL10055.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923238|emb|CBW54704.1| YscU, T3SS component, autocleavable regulator,PMID 19165725 [Yersinia enterocolitica (type O:8)] Length = 354 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 180/338 (53%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI DA +G S+E + ++++ L +L S + S L +L Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEV-VSTALIVALSAMLMGLSDYYFEHLSRL--MLIP 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP K Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK++++ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + M E R+++++ NPTH A+ + Y + E P++ K + + +RKIA Sbjct: 241 FHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +PI + LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338 >gi|70729046|ref|YP_258780.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf-5] gi|68343345|gb|AAY90951.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens Pf-5] Length = 378 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 181/356 (50%), Gaps = 11/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + + +LA LL + + Sbjct: 1 MAESESGQDKTEEPTEKRKKDSREKGEIARSKELNTLAIMLAGAGGLLVYGGGLALDLLE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115 + + + + L + ++LL +++ A + V+ LLL + G +G +L Sbjct: 61 IMRLNFSLPREVLLSPGAMGLYLLHSGKIAILAVQPVLLTLLLAAVIGPISLGGWLFAG- 119 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + P F R++ G+KR++S L+ +K+ K LV + L+ + +L Sbjct: 120 -----KSLAPKFSRMNPANGLKRMFSPTALIELLKALAKFALVLFVALSVLSADIDDLLR 174 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + H+ V + + + + +D+ +Q + KL M+KQE++DE K Sbjct: 175 IAHEPLEKAIIHSIQVVGWSTLWMACGLILIAAVDVPVQLYQAHKKLLMTKQEVRDEHKD 234 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G P +K R + + R + +MM A A ++ITNPTHYA+AL+Y + APVL+AKG Sbjct: 235 QEGRPEVKQRIRQLQREMSQRRMMAAIPEADVVITNPTHYAVALKYDAEKGGAPVLLAKG 294 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A ++R+IA H + + E P+LARS+F + IP Y AVAQ++ +Y Sbjct: 295 SDFLALQIREIAVAHEVMLLESPALARSIFYSTELEEEIPAGLYLAVAQVLAYVYQ 350 >gi|307546924|ref|YP_003899403.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581] gi|307218948|emb|CBV44218.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581] Length = 388 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 135/253 (53%), Gaps = 13/253 (5%) Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 LV P LL G +LI + +KP +++ +G+KRI+ LV K+ Sbjct: 107 LVAPALL-------GGWLI------SAKSLKPQASKLNPLKGLKRIFGTQALVELAKAIA 153 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 K +LVG++ L + + +S H L A + +++L + + ++D+ + Sbjct: 154 KSVLVGSVGMAYLYLHRGEFMALMSQPIHQALARAMGMAAEACGLMVLTLLVVILIDVPY 213 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 +L+M+K E+K E K+S G+P +K R + ++ R +MM A +IITNPT Sbjct: 214 QLWSHAKQLRMTKDEVKREHKESEGDPQVKGRIRQQQQAMARGRMMSQVPEADVIITNPT 273 Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 HYA+AL Y QT AP +VAKG + +A ++R++ E +P+ E LARSL+ V + + Sbjct: 274 HYAVALVYEQTGMAAPRVVAKGADAVAARIRELGEEAGVPLLEAAPLARSLYHHVDLEAE 333 Query: 334 IPPVFYKAVAQLI 346 IP Y AVA+++ Sbjct: 334 IPAALYTAVAEVL 346 >gi|15611774|ref|NP_223425.1| flagellar biosynthesis protein FlhB [Helicobacter pylori J99] gi|12230110|sp|Q9ZL73|FLHB_HELPJ RecName: Full=Flagellar biosynthetic protein flhB gi|4155273|gb|AAD06292.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 358 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 112/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E F +LA L+ + FF I+ V S++ Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L+ L++P L++ M+ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ K IL G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSL-----------KKILDGSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTVL-------DIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L I++L L D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ ++ +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKSNVVVTNPTHYAVALKF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|148546753|ref|YP_001266855.1| flagellar biosynthesis protein FlhB [Pseudomonas putida F1] gi|148510811|gb|ABQ77671.1| flagellar biosynthetic protein FlhB [Pseudomonas putida F1] Length = 380 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 178/369 (48%), Gaps = 36/369 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASL-----------------FSSILAC 43 M+E+++ +KTE P+ K+ A +G S+E + + L Sbjct: 1 MAESESGQDKTEEPTEKRKRTAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60 Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103 ++ + F + I + L ++ + + + I+ LL ++ A + G LF Sbjct: 61 MMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPILILLFVIAFVAP--IALGGFLFS 118 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 GS L +P F R++ GIKR++S+N L +K+ K ++ + Sbjct: 119 ----GSLL------------QPKFSRMNPLSGIKRMFSMNALTELLKALAKFFVILVVAI 162 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + L + +L + + H+ V + + + + D+ + Q ++KLK Sbjct: 163 VVLVNDRQALLSIANEPLDQAIIHSVQVVGWSALWMAAGLLLIAAADVPFQLWQAHNKLK 222 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M+KQE++DE K S G P +K R + + R + +MM A A +IITNPTHYA+AL+Y Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDP 282 Query: 284 TEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + AP+L+AKG + IA K+R+I EH + I E P+LAR+++ I IP Y AV Sbjct: 283 EKGGVAPLLLAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAV 342 Query: 343 AQLIYKIYH 351 AQ++ ++ Sbjct: 343 AQVLAYVFQ 351 >gi|37527636|ref|NP_930980.1| Type III secretion component protein SctU [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787071|emb|CAE16146.1| Type III secretion component protein SctU [Photorhabdus luminescens subsp. laumondii TTO1] Length = 351 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/339 (28%), Positives = 179/339 (52%), Gaps = 5/339 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S E S IL LI ++ S S L ++ A+ Sbjct: 4 EKTEKPTPKKLRDARKKGQVTKSNEVVSTSLILG-LIGMIMVMSEYYLEHLSKLMLIPAN 62 Query: 69 ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++ + +H+V +L L +P L + + + S+ Q +L+ + +KP Sbjct: 63 LLEKPFPQAFNHVV---ENLMQELVYLCLPILSVSALLSLVSHFAQYGFLLSGHSIKPDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+++ EG KRI+SI +LV F+KS +K+ L+ T++ I+L N +L I+ Sbjct: 120 KKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWITLAGNLQALLRLPECGTRCIVPV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +++ + + + +++ D + ++Q +L+MSK EIK E K+S G+P IK++++ Sbjct: 180 LGIMLTQLMTVCGIGLIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + M + +++I+ NPTH A+ +RY + E P++ K N A ++R+IA Sbjct: 240 QFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTNAQALQVRRIA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ + LAR+L++ I+ IP +A A+++ Sbjct: 300 EEEGIPVLQRIPLARALYQDGLIDQYIPADLIQATAEVL 338 >gi|83594153|ref|YP_427905.1| flagellar biosynthesis protein FlhB [Rhodospirillum rubrum ATCC 11170] gi|83577067|gb|ABC23618.1| Flagellar biosynthetic protein FlhB [Rhodospirillum rubrum ATCC 11170] Length = 356 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 109/346 (31%), Positives = 180/346 (52%), Gaps = 7/346 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTE PSS+K+ A +G S+E F + L + V + Sbjct: 3 DDDKDSKTEDPSSRKLGKAREDGQVAQSQEVKSFLMLGGALFMVAVMGGWIADKVALRVR 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP---GLLLFMMFGIGSYLIQRIPVLNL 120 V L L+ + L L L +P ++L ++ G+G + + + + Sbjct: 63 VFLEQPDTFHLDAVGLRDLLARLLLDIGLVLAMPIAMFIVLAILGGVGQFGL----IFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++S G KR++S+ LV +K VK+++V I+ + T F+ + Sbjct: 119 KKITPELQKISPLAGFKRLFSVRALVEGVKGIVKVVVVSAIVAALMLPRLRTPELFMDQD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + +LI ++ + + D + ++ +LKM+KQE+KDE K + G+P Sbjct: 179 ILVTLGQIHRLLVVLLISVVTIVGAIAAADFAFQKYKHIEELKMTKQEVKDEHKNAEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK++ + + R R +MM A+++ITNPTH+A+AL+Y APVLVAKGQ+ IA Sbjct: 239 QIKSKIRQLRMRRARERMMARVPEASVVITNPTHFAVALKYDMDMMSAPVLVAKGQDFIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R++A E+ +PI E P LAR+LF V I+ IPP YKAVA++I Sbjct: 299 LKIREVAEENEVPIVENPPLARALFAAVEIDHEIPPDHYKAVAEVI 344 >gi|121997283|ref|YP_001002070.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1] gi|121588688|gb|ABM61268.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1] Length = 391 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 61/380 (16%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREAS-----------------LFSSILACL 44 E++ KTE P+ K+ E++ +G P SRE + + L L Sbjct: 3 QESEDGQEKTEDPTPKRREESRKKGQVPRSRELTTMLLLLVAAGALLALGPFMGNQLTAL 62 Query: 45 IYLLF------FFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 + F + PGI V LH L ++ + F+ L A+ ++ P Sbjct: 63 LEWSFTIDRSHIYDPGI--VIERLHEALGRGL------LTVLPFIAVML---AAAVIAPT 111 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 L F + + ++P +++S +G +R++ V K+ K++++ Sbjct: 112 ALGGWSF-------------SFHPMQPKPEKLSPIKGFQRMFGTKAAVELGKALGKVLVI 158 Query: 159 GTI---ITISLTENYFTM----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 G + + +N++TM L+ A + Y FF ++ L + + +DI Sbjct: 159 GGTAVGLFVLFWDNFYTMSRAPLEPSMAEGMRLFYIFFF-------LLALSMLVVVAIDI 211 Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 + + K++M++QE+K+E KQ+ G P +K R + R +MME A ++ITN Sbjct: 212 PYQIYDHTQKIRMTRQEVKEEFKQTEGKPEVKQRVREQQREMTNRRMMENVPDADVVITN 271 Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P HYA+AL+Y Q+ AP +VAKG +L+A ++R++A E++I IF+ P LAR+L+ ++ Sbjct: 272 PAHYAVALKYDQSTMRAPTVVAKGADLLAARIRELAEENDILIFQAPPLARALYHSADLD 331 Query: 332 SAIPPVFYKAVAQLIYKIYH 351 IP Y AVAQ++ +Y Sbjct: 332 QEIPGALYFAVAQVLAYVYQ 351 >gi|258622507|ref|ZP_05717529.1| flagellar biosynthetic protein [Vibrio mimicus VM573] gi|262173373|ref|ZP_06041050.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] gi|258585207|gb|EEW09934.1| flagellar biosynthetic protein [Vibrio mimicus VM573] gi|261890731|gb|EEY36718.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] Length = 375 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 186/357 (52%), Gaps = 24/357 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E+ + D KTE S++KI+ A G P ++E F++ L +L F++ I+ Sbjct: 1 MNEHSSQD-KTEQASAQKIKKARQGGQVPRAKE---FTTAAIFLAVVLLFYAQLDHIWQS 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + S T++ L + +V L +++P + ++ +GS ++ + Sbjct: 57 MAGIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ P +++ GIKR++S +LV +KS +K++++ ++ L +N+ L + Sbjct: 117 RPANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYL-DNHLQPLLGMQ 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATL---------TVLDIGWSYHQWYSKLKMSKQEI 229 P +LIM +LF L V+DI + ++ +L+MSKQE+ Sbjct: 176 RLP--------LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQEL 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E KQ+ G P IK+R + I + R K+ + A +++TNPTHYA+AL+Y + +DAP Sbjct: 228 KEEFKQNEGRPEIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +VAKG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 288 FVVAKGVDETAIHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHIL 344 >gi|312962260|ref|ZP_07776752.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] gi|311283597|gb|EFQ62186.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] Length = 378 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 107/363 (29%), Positives = 179/363 (49%), Gaps = 25/363 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + ++++A LL + + Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGG----GLAL 56 Query: 61 DLHVLLA---SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYL 111 DL L+ S + L + + L H A V P L+ ++ +G +L Sbjct: 57 DLLELMKHNFSLPREVLLNPDSMGQYLMHSGKIALLAVQPILITLLLAALIGPVALGGWL 116 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + P F R++ G+KR++S LV +K+ K IL+ + L+ + Sbjct: 117 ------FAAGSMAPKFSRMNPAAGLKRMFSAKALVELLKALAKFILILFVALSVLSSDVD 170 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 +L S + H+ V + + L+ IA + W H+ KL M+KQE Sbjct: 171 DLLRIAHEPLESAIIHSVQVVGWSALWMSAGLIIIAAVDAPIQLWESHK---KLLMTKQE 227 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 ++DE K G P +K R + + R + KMM A A ++ITNPTHYA+AL+Y + A Sbjct: 228 VRDEHKDQEGRPEVKQRIRQLQREMSQRKMMAAVPDADVVITNPTHYAVALKYDPEKGGA 287 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P+L+AKG + A K+R+IA + I + E P LARS+F ++ IP Y AVAQ++ Sbjct: 288 PMLLAKGSDFTALKIREIAVANEILLLESPELARSIFYSTDLDHEIPAGLYLAVAQVLAY 347 Query: 349 IYH 351 +Y Sbjct: 348 VYQ 350 >gi|239815246|ref|YP_002944156.1| type III secretion exporter [Variovorax paradoxus S110] gi|239801823|gb|ACS18890.1| type III secretion exporter [Variovorax paradoxus S110] Length = 365 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 182/356 (51%), Gaps = 14/356 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY---LLFFFSPGIYS 57 M+E D ++ EA + K++ A G A S + ++A L++ +++ G + Sbjct: 1 MAEQDL--DRNEAATPYKLQRARERGQAAKS------TDVVAALVFGVAVVYLTWRGFGA 52 Query: 58 VTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 V S A D S + L+ SA L P M+ I ++Q Sbjct: 53 VASQFRFDQALLIHAGRMDPSGVGLWPLIERALRSALTLAAPFFAAIMLAAIVGNMMQTG 112 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 P+L+ VK F R++ G+K+++S+ L + ++ VK+ L+G + ++L Sbjct: 113 PILSFEPVKMDFTRINPVNGLKKLFSMRVLFDTARAIVKLALLGLVAFLALEALASQFYA 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 S +P L + V + + L + + +LD+ ++ ++ K++MS++E+KDE K Sbjct: 173 LASLSPVGYLRTLLDDLASVGLKMALVLTLIALLDLMYTRREFAKKMRMSQRELKDEAKH 232 Query: 236 SYGNPIIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P I+ R + + R ++ + + T A ++ITNPTH A+AL+Y +P L+AK Sbjct: 233 REGDPRIRARLRELRRETLKRSLALRQTRNADMLITNPTHLAVALKYEHGRMASPQLLAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 G +A MR+IA H IP+ + P LAR L+K++P++ ++PP Y VA++I ++ Sbjct: 293 GAGHMAAAMREIAARHRIPVVQNPPLARRLYKELPVDHSVPPELYAQVARIIVWVF 348 >gi|268316329|ref|YP_003290048.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252] gi|262333863|gb|ACY47660.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252] Length = 360 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 182/350 (52%), Gaps = 8/350 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV-LL 66 D K P+ ++++ A EGN S+E + +L + L P Y + L Sbjct: 5 DQKQFDPTPRRLQKAREEGNVFRSQE-TSAVLLLLGGLLTLALSLPYAYGLMRQFTARTL 63 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHVK 124 SA L S ++ L + RL++P LLL + FG+ + P L K Sbjct: 64 MSAPFYPLTSGS-VIGALQEALMVLGRLLVPFFALLLVIAFGVNVWQTGWHPTLKPLLPK 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P +R+S G++R++S L N +K+ +KI +VG I + + + +L+ + + +I Sbjct: 123 P--ERISPLRGLQRLFSSRGLFNVLKALLKIAIVGPIAFLVIYRHLPEILELHTHSLEAI 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L + ++ L + L+ D + ++ LKM+ QE+KDE +++ G+P++K+ Sbjct: 181 LQATGLWMLQLAAYTLGALLLLSAADFAYEKWKYRQDLKMTAQEVKDEHRETEGDPMVKS 240 Query: 245 RQ-KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R+ K R ++ A R+ ++ITNPTHYA+ALRY +E AP ++AKG A ++ Sbjct: 241 RRLKKARELARRRRLDHAVLRSDVVITNPTHYAVALRYDPSEAPAPRVLAKGIRKRALRI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R +A EH IP+ E+P LAR+L+ VP IP Y AVA ++ +IY ++ Sbjct: 301 RALALEHGIPVVEDPPLARALYHNVPEEQEIPEELYLAVATILAEIYRQR 350 >gi|291519578|emb|CBK74799.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio fibrisolvens 16/4] Length = 239 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 138/239 (57%), Gaps = 10/239 (4%) Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTMLDF 176 + ++P + + G KRI+S +++VN + + KI LV I +S+ N F + D Sbjct: 1 MKPLQPKLSKFNPINGFKRIFSKDSIVNLLMALAKIALVCYISYVSIRNQANNIFILYDI 60 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIK 234 S L F + V I I + L +D ++Y +W + +KM+KQE+KDE K Sbjct: 61 ---GLKSALSLIFTLICDVGIKISIVYIILGFID--YAYQKWKFTNDMKMTKQEVKDEYK 115 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P IK RQK R +MM+ +A ++ITNPTH A+A+ Y T+++AP ++AK Sbjct: 116 NTEGDPQIKGRQKQKMMESSRRRMMQNVPQADVVITNPTHIAVAILYDNTKDEAPRVIAK 175 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G++ +A K+++ A + +PI E LAR+L+ V I+ IPP Y+AVA+++ +Y +K Sbjct: 176 GEDYLALKIKEAAKDSGVPIVENKPLARALYATVEIDEIIPPELYQAVAEILAVVYTQK 234 >gi|289678968|ref|ZP_06499858.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. syringae FF5] Length = 329 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 170/325 (52%), Gaps = 1/325 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLF 325 K+R+I + I I E +LARS++ Sbjct: 300 LKIREIGAHNEILILESAALARSIY 324 >gi|254469948|ref|ZP_05083353.1| translocation protein in type III secretion [Pseudovibrio sp. JE062] gi|211961783|gb|EEA96978.1| translocation protein in type III secretion [Pseudovibrio sp. JE062] Length = 377 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/346 (28%), Positives = 174/346 (50%), Gaps = 4/346 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ ++ +G S E + S+ + + YL F + + + L Sbjct: 8 EKTELPTPKRERESREKGQVAKSTEVTTTISLFSVIAYLWFSWDLNFSKLVGLMDDLADL 67 Query: 69 ATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 AT+R VF + + +V+P + + + GI +Q + ++ + P Sbjct: 68 ATRRDFSSSAGEGVFGVFSTFMD---IVLPLIGVAIAAGIFGNFVQFGFLWAVDSIMPKL 124 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++S EG KRI+S+ +V +KS +KI+L+ T++ ++ ++ +S I Sbjct: 125 SKISPAEGFKRIFSLKQVVQVLKSILKIVLLSTMLYFTVKYAIGAYINSLSCGIPCITNI 184 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + ++ +L + L + +LD + H LKM+K+E+K E K+S G+P IK ++K Sbjct: 185 SGAIMKLILGISFLAFVGVAILDFMFQKHTHIKSLKMTKEEVKREHKESEGSPEIKGQRK 244 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 I++ + +E T +A+ ++ NPTHYA+A+ Y E P++VAKG +L A KMR A Sbjct: 245 RISQEILMSDNLENTRKASAVVVNPTHYAVAISYRPDEVAVPLVVAKGLDLTALKMRAEA 304 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +PIF LAR L +V I IP + AVA+++ I K Sbjct: 305 EAAGVPIFANVKLARMLHAEVQIEELIPQDMFAAVAEILVWIDQNK 350 >gi|58579708|ref|YP_198724.1| type III secretion system protein HrcU [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424302|gb|AAW73339.1| HrcU [Xanthomonas oryzae pv. oryzae KACC10331] Length = 423 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65 + KTE P+ KK+ DA +G P+S + + + + L L S G Y V + L Sbjct: 67 EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFVDH-MRALTR 122 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 123 IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 182 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I Sbjct: 183 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDIS 242 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E K+S G+P IK Sbjct: 243 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 300 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 301 GKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 360 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + AIP ++ VA Sbjct: 361 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 399 >gi|83646791|ref|YP_435226.1| flagellar biosynthesis pathway protein FlhB [Hahella chejuensis KCTC 2396] gi|83634834|gb|ABC30801.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis KCTC 2396] Length = 342 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 164/306 (53%), Gaps = 8/306 (2%) Query: 56 YSVTSDLHVLLASATQRKLEDISHIVF-LLTHLSLS------ASRLVIPGLLLFMMFGIG 108 +SV+ DL S Q+ D + + F ++T + S ++ P L++ M+ G+ Sbjct: 21 WSVSQDLATRFFSLCQKLFADAASVDFDIITAKAWGIWIVSEVSWILSPLLVVMMVIGVL 80 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 ++Q PV + + +KP KR++ G KR++SI L +K+ +K+ L+G+++ +L Sbjct: 81 CSIVQTGPVFSFHPIKPDIKRINPITGFKRLFSIKILFELVKNLIKLALLGSVLYWALAG 140 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + + + + L ++ + + + ++D+ ++ ++ ++M+K+E Sbjct: 141 LMPDLFGLTAKSAATALPVFIGYAAGIIFKLTAALLLIALIDMLFTRWEFMRNMRMTKKE 200 Query: 229 IKDEIKQSYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 +KDEIK+ G+P I+ ++K + R R R + A +IITNP HYA+ ++Y + Sbjct: 201 VKDEIKRREGDPHIRAKRKELERELRKRSGSAASVPEADLIITNPEHYAVVVKYDAKKMA 260 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP + KG + +AK +R +A +H +PI ++P LAR LFK+ I S IP + VA+ + Sbjct: 261 APTVTGKGGDAMAKHLRDLARQHQVPIIQDPPLARYLFKKTEIGSMIPEDAFVGVARALR 320 Query: 348 KIYHKK 353 + Y K Sbjct: 321 RAYQIK 326 >gi|313681570|ref|YP_004059308.1| flagellar biosynthetic protein flhb [Sulfuricurvum kujiense DSM 16994] gi|313154430|gb|ADR33108.1| flagellar biosynthetic protein FlhB [Sulfuricurvum kujiense DSM 16994] Length = 355 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/360 (29%), Positives = 183/360 (50%), Gaps = 38/360 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFS----SILACLIYLLF-----------FFSP 53 KTE P++KK+EDA EGN P S++ SILA L+ F +FS Sbjct: 6 EKTEEPTAKKLEDARAEGNVPKSQDVVGVVVLFVSILAVLMMFTFIADRMLHLSQYYFSL 65 Query: 54 GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 + +L V LA T ++ FL+ L +S ++ + G+ + Q Sbjct: 66 MRQPLDRELMVDLAVVTMKE--------FLIMALPVS---------IIVAVAGVFGTVAQ 108 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK---IILVGTIITISLTENY 170 + P+F ++ +G ++++ + +K +K + +G + E Sbjct: 109 IGFNFTTKPLTPNFSKLDPIKGFANLFTLQKGLESIKITLKSFTALGIGFLYFWYFVEEL 168 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 T+ F + L + V+++I+ A V+D+ ++ KLKMS QEIK Sbjct: 169 PTVALFTLQDQMGWLRDKAIVLASVMLLIIFVYA---VIDLFLVRKHYFDKLKMSLQEIK 225 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE+K G+P IK + + I R +MM + A ++ITNPTHYA+A+ Y + +++APV Sbjct: 226 DEMKNMEGDPHIKAKIRQIQMQAARKRMMTSVPTADVVITNPTHYAVAIVYDENKHNAPV 285 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG + +A +++K+A E+ + I + P LARSL+K+V I+ IP + + AVA+++ +Y Sbjct: 286 VVAKGVDNMAIQIKKVARENGVHIVQNPPLARSLYKEVDIDHPIPDMLFAAVAEVLAYVY 345 >gi|312879606|ref|ZP_07739406.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM 12260] gi|310782897|gb|EFQ23295.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM 12260] Length = 390 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 156/279 (55%), Gaps = 15/279 (5%) Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137 S VF L+ L L + G L M++ +G VL + P + R++ EG+K Sbjct: 117 SSRVFFLSWLPLGLCCTL--GALGLMVYQVGF-------VLTPKPLIPKWNRLNPVEGMK 167 Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS---ANPHSILYHAFFTVRK 194 R+ SI +LV +K +K +L+ I+ +L ++ ++ + + +++ Sbjct: 168 RLISIRSLVELVKGILKALLLLLILYSALRKDLAALISTMRYPFTQGMGAVVDKIWSLSF 227 Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 + M+L + L W + + ++MSKQEIK+E KQ G+P++K R + R Sbjct: 228 KMAMMLFVLGLFDYLYQRWEFER---SIRMSKQEIKEEYKQMEGDPLVKRRIRQRQRELA 284 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 + +MM +A ++ITNPTH ALAL+Y + +AP+L+AKG+ IA+K+R++A EH IPI Sbjct: 285 QRRMMAEVPKADVVITNPTHLALALQYDREIMEAPLLLAKGEGYIARKIREVAEEHKIPI 344 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + P LA++L+++V + +P FY+AVA+++ +Y K Sbjct: 345 VQNPPLAQALYREVEVGGEVPEAFYRAVAEVLAFVYRLK 383 >gi|166714026|ref|ZP_02245233.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|111146902|gb|AAX40642.2| HrcU [Xanthomonas oryzae pv. oryzicola] Length = 357 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 13/341 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DA +G P+S + + + + L L S G Y V D L Sbjct: 3 EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFV--DHMRALT 57 Query: 68 SATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LE D + I L H+ + L++P L ++ G+ Q +L V Sbjct: 58 RIGFDFLENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVS 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F ++ G+K+++S+ +L+N +K +K +L+G ++ + + ++ P I Sbjct: 118 PKFDSLNPANGVKKLFSLRSLINLLKLVIKAVLIGVVLWVGIRALMPMIIGLAYETPLDI 177 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPII 242 A+ T+ + + +L + D WS W +MSK E K E K+S G+P I Sbjct: 178 AQIAWRTLSILFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEI 235 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K A+ + E +A +++ NPTHYA+AL Y + P +VAKG + A + Sbjct: 236 KGKRKEFAKELVFGDPRERVVKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALE 295 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +R A+ IPI P LAR+L+ QV + AIP ++ VA Sbjct: 296 LRAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 335 >gi|260767693|ref|ZP_05876628.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|260617202|gb|EEX42386.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|315179475|gb|ADT86389.1| flagellar biosynthesis protein FlhB [Vibrio furnissii NCTC 11218] Length = 339 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 134/233 (57%), Gaps = 8/233 (3%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180 P F +++ G+KR++ + + V +KS +K++LV + I S + + LD N Sbjct: 86 PKFSKMNPLSGLKRMFGLQSWVELLKSILKVLLVAGVAFYLIEASKQDLFQLSLDTFPQN 145 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +D+ + Q ++LKM+KQE+KDE K + G P Sbjct: 146 ----IFHALDILLNFVLLISCSLLVVVAIDVPFQIWQHANQLKMTKQEVKDEYKDTEGKP 201 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY Q + APV+VAKG + +A Sbjct: 202 EVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVALRYKQNTDRAPVVVAKGIDHLA 261 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 262 LKIREVAREHDIMIIPAPPLARALYHTTELEQEIPDGLFVAVAQVLAYVFQLK 314 >gi|323491458|ref|ZP_08096642.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546] gi|323314327|gb|EGA67407.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546] Length = 376 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 190/357 (53%), Gaps = 10/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ + Sbjct: 1 MAESDG-QERTEDATPRRLQQAREKGQVARSKELASVSVLVIGSVALMWFGEGLARALFT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + + + + L LS L++ + LF+ IG+ + I ++ Sbjct: 60 AMGRLFSLSREEIFDQVKLFDIALGSLSSLLLPLLLILVTLFIAALIGAAGVGGIS-FSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM-LDF 176 P + +++ G+KR+ + + V +KS +K+ LV + + + E+ F + +D Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 N ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K++ Sbjct: 179 YPQN----IFHALDILLNFILLISCTLLLVVAIDIPFQIWQHANQLKMTKQEVKDEYKET 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG Sbjct: 235 EGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDSDRAPIVVAKGT 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 295 DHMALKIREIAREHDIYVVPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351 >gi|307637461|gb|ADN79911.1| Flagellar biosynthesis protein [Helicobacter pylori 908] gi|325996051|gb|ADZ51456.1| Flagellar biosynthesis protein [Helicobacter pylori 2018] gi|325997646|gb|ADZ49854.1| Flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 358 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 183/353 (51%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E F +LA L+ + FF I+ V S++ Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSVFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L+ L++P L++ M+ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L L +D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|51597656|ref|YP_071847.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 32953] gi|170022952|ref|YP_001719457.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186896790|ref|YP_001873902.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis PB1/+] gi|51590938|emb|CAH22594.1| Putative flagellar assembly/export protein, flhB [Yersinia pseudotuberculosis IP 32953] gi|169749486|gb|ACA67004.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186699816|gb|ACC90445.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis PB1/+] Length = 377 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 102/340 (30%), Positives = 174/340 (51%), Gaps = 17/340 (5%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P++ K+ A +G+ P S++ ++ + ++ I LL F P ++ S V +A + Sbjct: 12 PTAGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKALVSQSFVSVAQLASQL 70 Query: 74 LEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGI---GSYLIQRIPVLNLNHVK--PS 126 + + FLL +L + A L +IP + LF M G + N VK P Sbjct: 71 DDQGALEQFLLANLFIFAKFLATLIP-IPLFSMLATLIPGGW--------NFTPVKLIPD 121 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K++S GIKRI+S +N +K K +V + + + + +L + + Sbjct: 122 LKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEEAIT 181 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 F +L+ + + +DI S+H + K+KM+KQE+K E K + GNP IK+R Sbjct: 182 QGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPEIKSRV 241 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + R ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA +R I Sbjct: 242 RQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIALYIRSI 301 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +H I I E P LAR+++ +N IP Y+A+AQ++ Sbjct: 302 AQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVL 341 >gi|227873532|ref|ZP_03991777.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] gi|227840622|gb|EEJ51007.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] Length = 361 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 114/368 (30%), Positives = 180/368 (48%), Gaps = 44/368 (11%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTEAPS KK DA EGN SR+ + ++L + Y + F P IY DL Sbjct: 2 ADGDKTEAPSEKKRSDARKEGNVFQSRDI-VTVAVLFGVFYAVRFMMPFIYK---DLRNF 57 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRL-----------VIPGLLLFMMFGIGSYLIQR 114 L S+I+ LL S +++L +P LL+ + G+ + L+Q Sbjct: 58 L-----------SYILELLDEPSPISNKLYLRFTWLFVKSAMPLLLVTVFLGVIASLVQT 106 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI---------ILVGTIITIS 165 ++ + P F +++ +G+ RI+S N+V +K+ +KI I+ II I+ Sbjct: 107 RFNISFKLLTPKFSKLNPMQGLGRIFSKKNVVELLKNILKIIILINFLYSIIKADIIPIA 166 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 M+ N L F + + + L IA + W Y + LKM+ Sbjct: 167 ------KMVHMDIQNSSLALVSMMFDLITRVCGVFLIIALFDFMYQKWEYE---NNLKMT 217 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+KDE K GNP IK R K R+R +MM+ A +II NP H A+A++Y + Sbjct: 218 KQEVKDEYKMLEGNPEIKGRMKQQMRARANQRMMQQVPDADVIIRNPEHLAIAIKYDPDK 277 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 N APV++AKGQ+ +A ++ + + + E LAR+++ + IP FY AVA++ Sbjct: 278 NTAPVVLAKGQDELALRIVAVGEANGVTAIENKPLARAMYPLCHVGKEIPGDFYGAVAEI 337 Query: 346 IYKIYHKK 353 + IY K+ Sbjct: 338 LVYIYQKE 345 >gi|289548904|ref|YP_003473892.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484] gi|289182521|gb|ADC89765.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484] Length = 349 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 187/344 (54%), Gaps = 16/344 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSPGIYSVTSDLHVLL 66 +++TE + + EG+ +++ L +S+ +I + L+ P +Y S L + Sbjct: 4 ESRTERATPYRRRKLREEGH--VAKSTDLVASLSLLVITVSLYLVGPQLYY--SLLSIFY 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + T E + + F + +S L++ L ++ +G + + V L ++ Sbjct: 60 TAPTLSVTEHPTLLRFFVEKVSPYILSLMVLSTLTVILAHLGQFGV----VFTLKPLRFR 115 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGTIITISLTENYFTMLDFISANPHSIL 185 ++R++ EGIKR+ S+ L K+ +KI IL+ T+ TE Y M + SIL Sbjct: 116 WERLNPVEGIKRLLSLTTLFELFKNTLKIGILLFTVYLFLRTEIYRLMESVLLPLHISIL 175 Query: 186 YHAFFTVRKVLIM--ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 T++ +I+ + + +A+L +L W Y + K++M+KQE+K+E KQ GNP++K Sbjct: 176 DVMGLTLKLFIILGTLAIIMASLDLLYRRWDYER---KIRMTKQEVKEEYKQHEGNPMVK 232 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLIAKK 302 + R + +M++ +AT++ITNPTH A+ALRY + D APV++AKG IA++ Sbjct: 233 GAIRKRMRQLAKGRMIKEVPKATVVITNPTHVAVALRYDPSGGDRAPVVLAKGVGQIAER 292 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +A E+ +PI + LARSL++ + IPP FY+AVA++I Sbjct: 293 IINVAREYGVPIVRKEELARSLYRWAEVGEEIPPRFYRAVAEII 336 >gi|253988526|ref|YP_003039882.1| type III secretion component protein sctu [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637892|emb|CAR66521.1| type iii secretion component protein sctu [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779976|emb|CAQ83137.1| type iii secretion component protein sctu [Photorhabdus asymbiotica] Length = 350 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 181/339 (53%), Gaps = 5/339 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S E S IL L+ ++ S S L ++ A+ Sbjct: 4 EKTEKPTPKKLRDARKKGQVTKSTEIVSTSLILG-LVGMIMVMSDYYLEHLSKLMLIPAN 62 Query: 69 ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++ + ++H+V +L L +P L + ++ + S+ Q +L+ + +KP Sbjct: 63 LLEKPFPQALNHVV---ENLMQELVYLCLPILSVSVLLSLASHFAQYGFLLSGHSIKPDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+++ EG KRI+SI +LV F+KS +K+ L+ T+I ++L N +L+ I+ Sbjct: 120 KKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLIWVTLEGNLQGLLNLPECGSRCIIPV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +++ + + +++ D + ++Q +L+MSK EIK E K+S G+P IK++++ Sbjct: 180 LGMMLTQLMTVCGIGFIIISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + M + +++I+ NPTH A+ +RY + E P++ K + A ++R+IA Sbjct: 240 QFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRIA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ + LAR+L++ I+ IP +A A+++ Sbjct: 300 EEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVL 338 >gi|94986973|ref|YP_594906.1| flagellar biosynthesis protein FlhB [Lawsonia intracellularis PHE/MN1-00] gi|94731222|emb|CAJ54585.1| Flagellar biosynthesis pathway, component FlhB [Lawsonia intracellularis PHE/MN1-00] Length = 357 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 103/356 (28%), Positives = 192/356 (53%), Gaps = 13/356 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D P +KTE + K+ ++A +EG+ P S E + + A ++ L IYS H Sbjct: 2 SDDP-SKTEKATPKRRQEARSEGSVPKSEEVTKALTTAAGMLGL------AIYSGVMGRH 54 Query: 64 ---VLLASATQR-KLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + T+ + E + V+ L +++ + L++P LL + S +Q + Sbjct: 55 FETIFYYIFTESFRFEVTAQSVYALFIYVAQEIAILLMPILLFIAVTAWISLRVQVGALW 114 Query: 119 NLNHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 K + + ++ +G+K ++ S LV ++S V++I++G + + + + L Sbjct: 115 TTKVFKFKWSKFNIIKGLKGMFASQQTLVRLLRSLVQVIVIGIVPYMIIKGEFSNFLPLY 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 A+P + + T +++ L+ + + V D+ ++ + + LKM+KQEIKDE KQ Sbjct: 175 YASPSGVADYMLNTGIVLVLYTLIPMTIIAVADLVYNRYSYEENLKMTKQEIKDESKQQE 234 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+PI+K +Q+ + ++MM+ +A +++TNP H A+ALRY E AP+++A G + Sbjct: 235 GDPIVKQKQRQKMMQMMTNRMMQDVPKADVVVTNPKHIAVALRYNALEAPAPLVLAIGVD 294 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+++IA E+NIPI E LAR+L+K V + IP YKAVA ++ ++ K Sbjct: 295 RVAEKIKEIARENNIPIRENVPLARALYKAVGVGEMIPEELYKAVAAILASVWRLK 350 >gi|153832518|ref|ZP_01985185.1| VscU [Vibrio harveyi HY01] gi|156974012|ref|YP_001444919.1| Type III secretory pathway, component EscU [Vibrio harveyi ATCC BAA-1116] gi|41834187|gb|AAS13325.1| VscU [Vibrio harveyi] gi|148871313|gb|EDL70185.1| VscU [Vibrio harveyi HY01] gi|156525606|gb|ABU70692.1| hypothetical protein VIBHAR_01723 [Vibrio harveyi ATCC BAA-1116] Length = 349 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 178/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTELPTPKKLRDARQKGQVAKSQEV-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D ++ + ++ L+ P L++ + I S + Q + + VKP K Sbjct: 63 LAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + + Sbjct: 121 KINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPTIT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V++++I+ + + D + +LKM+K E+K E K+ G+P IK++++ Sbjct: 181 GVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M IA+ Sbjct: 241 LHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAIAH 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ ++ LAR+L+ +N IP +A A+++ Sbjct: 301 EEGIPVMQKVPLARALYADGQLNQYIPGDLIEATAEIL 338 >gi|145597135|ref|YP_001154599.1| type III secretion protein [Yersinia pestis Pestoides F] gi|145212903|gb|ABP42309.1| type III secretion protein [Yersinia pestis Pestoides F] Length = 354 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 179/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI DA +G S E + ++++ L +L S + S L +L Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSNEV-VSTALIVALSAMLMGLSDYYFEHFSKL--MLIP 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP K Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK++++ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + M E R+++++ NPTH A+ + Y + E P++ K + + +RKIA Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +PI + LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338 >gi|90021814|ref|YP_527641.1| flagellar biosynthesis protein FlhB [Saccharophagus degradans 2-40] gi|89951414|gb|ABD81429.1| flagellar biosynthetic protein FlhB [Saccharophagus degradans 2-40] Length = 376 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 178/354 (50%), Gaps = 7/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P++K+ E A +G P S+E + S++L L+ F I + Sbjct: 1 MAEEDSAQEKTEEPTAKRQEKAREDGQIPRSKELTT-SAVLIVGCVGLYMFGGQIAQGLA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLS---ASRLVIPGLLLFMMFGIGSYLIQRIPV 117 D+ + + + D + +L HL S +++IP + ++ I + + Sbjct: 60 DILKFNFTIEREAIFDPNA---MLGHLGSSFYLGLKVLIPLFAVLLVAAIAGPIALGGWL 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P R+ G+KR++S+ +LV +K+ K+ +V + L +L Sbjct: 117 FSTKSLAPKLNRMDPVAGLKRMFSVKSLVELVKAIGKVGVVVAFAFVLLNYMKEDLLGLG 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + H+ + I+I + + +DI + KL+M++QEIKDE+K S Sbjct: 177 FEGVERGMAHSVYLSIIAAIIISVSTLVIAAVDIPFQIWDNVKKLRMTRQEIKDEMKDSE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P +K R + + +++MM A A ++ITNPTHY++AL+Y + P+L+AKG + Sbjct: 237 GKPEVKGRIRQLQYEMAQNRMMAAVPEADVVITNPTHYSVALKYDPNSMETPILLAKGVD 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A K+R+IA + I + P LAR+++ ++ IP Y AVAQ++ ++ Sbjct: 297 HMAMKIREIAKANKIEFIQSPLLARAIYHTTEVDEEIPSGLYVAVAQVLAYVFQ 350 >gi|188494712|ref|ZP_03001982.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] gi|188489911|gb|EDU65014.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] Length = 379 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 183/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q E I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI R++S +L K VK ++V ++ ISL N Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + L + A P + + + +V + +++ +F A +LD+ + + LKM+ Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|218887500|ref|YP_002436821.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758454|gb|ACL09353.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 346 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 170/343 (49%), Gaps = 13/343 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P+ K++ +A +G+ S++ ++LA YL D+ + + Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDVGSALTVLAVGAYLAIK--------GGDIFAEIMA 54 Query: 69 ATQRKLEDIS-----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 T+ + +S + L T ++ A +V+P + L M G+ + L Q + L Sbjct: 55 VTELSMRQMSLPFDQALPLLATAVTRGAIGIVLPVVGLAMCVGLLANLAQTGVLFALKAA 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P + +S + K+++S+ N V +K+ +K+ ++G + L+++ + Sbjct: 115 MPKLENMSPGKWFKKVFSVRNAVEMLKNCIKVAVLGWAVWKVLSDHMRGLFAIPDGGIGG 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 +L T R +++ + LD + Q+ + M+K E+K E K+ G+P IK Sbjct: 175 LLTVLGITARDMVLTSAAVFCVIAALDYMYQRWQYNKQHMMTKDEVKREYKEMEGDPHIK 234 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K + + I + +A +I+TNPTHYA+AL Y + PV++AKG+ L+AK+M Sbjct: 235 GKRKQLHQEMITQNTLSNVRKAKVIVTNPTHYAVALDYEKDRTPLPVILAKGEGLLAKRM 294 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +IA E IP+ + LARSLF + N+ IP VA+++ Sbjct: 295 VEIAREEGIPVMQNVPLARSLFAEGTENAYIPKDLIGPVAEVL 337 >gi|147678408|ref|YP_001212623.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum thermopropionicum SI] gi|146274505|dbj|BAF60254.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum thermopropionicum SI] Length = 357 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 186/354 (52%), Gaps = 17/354 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLHVLL 66 +TE + ++I++A +G ++R L ++ LA ++ LL Y+V + + L Sbjct: 6 QERTEQATPRRIQEARRKGQ--VARSTDLTGALCLAAMVALL-------YAVKDEFFLDL 56 Query: 67 ASATQRKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 ++ + +L L +++L+ P + + ++ + S L+Q + + Sbjct: 57 QRYLGWYFSQVAGFIASEEVPGAVLYDTVLFSAKLMAPFIAVPVVTAVVSNLVQVGFLFS 116 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P ++ G++RI+S +LV +KS K ++G I + N +L + Sbjct: 117 TEALNPKLSVLNPATGLQRIFSSRSLVELVKSVFKFTVIGIITYYLIKANLADLLLVFNR 176 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P I + KV + L++LD + +++ L MS+QE+K+E +Q+ G+ Sbjct: 177 PPGGIYREVAGFILKVAGWAAVAYLILSLLDYIYQRYEYKKSLMMSRQELKEEFRQTEGD 236 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK+RQ+ + R+ ++++ +AT+++TNPT A+ALRY Q + AP +VAKG I Sbjct: 237 PLIKSRQREMRRAISLNRIISEVPKATVVVTNPTSLAVALRYEQGQMPAPKVVAKGAGRI 296 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++++IA EH++PI E +AR ++ V ++ IP Y+AVA+++ +Y K Sbjct: 297 AGRIKEIAREHDVPIVENKEIARFIYYNVELDQVIPFEIYQAVAEILALVYRLK 350 >gi|34496481|ref|NP_900696.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] gi|34102335|gb|AAQ58701.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] Length = 388 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 173/361 (47%), Gaps = 28/361 (7%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TE S+K++ A +GN P S+E S F+ + + LL + ++ Sbjct: 3 EDSDLERTEPASAKRLSMAREDGNIPRSKELSTFAVTMTG-VALLMAMGGQLGHALGEIM 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118 L + Q +++ + A + P FG + P+L Sbjct: 62 RHLFTFDQATVQNTEPALIRFKESLFQALGALAP------FFGGLALAALLAPMLVGGWN 115 Query: 119 -NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++P+F +++ GIKR++S+N +K+ +K +L+G I T + ++ + Sbjct: 116 MTFKALEPNFGKLNPLPGIKRLFSLNAATEGLKAILKSLLIGGIATWYIWRERGEIIGLL 175 Query: 178 SANPHS-------ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 + + ++ FF V LI+ L LD+ + +Y KL+M+K+E+K Sbjct: 176 AMPLEAGILKMTDLMIRTFFIVTSALIL-------LVALDVPYQLWSYYKKLRMTKEEVK 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E K++ G+P +K R + + R R +MM+ +A +I+TNPTH+A+AL+Y T AP Sbjct: 229 QEYKEAEGSPEVKGRIRQMQREAARKRMMQEVPKANVIVTNPTHFAVALKYDDTMR-APQ 287 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG ++A+K+ E +PI P AR+L+ + IP Y A AQ++ ++ Sbjct: 288 VVAKGSLILAEKIIDTGKESRVPIMRSPRFARALYFHAELGQDIPAQLYAAAAQVLAYVF 347 Query: 351 H 351 Sbjct: 348 Q 348 >gi|162147444|ref|YP_001601905.1| flagellar biosynthetic protein flhB [Gluconacetobacter diazotrophicus PAl 5] gi|209545554|ref|YP_002277783.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl 5] gi|161786021|emb|CAP55603.1| putative flagellar biosynthetic protein flhB [Gluconacetobacter diazotrophicus PAl 5] gi|209533231|gb|ACI53168.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl 5] Length = 358 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 173/361 (47%), Gaps = 32/361 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E K++ P+ K++E A EGN SRE + LA L L F+ T+ Sbjct: 1 MAEGSGGGEKSQDPTGKRLETAREEGNVAQSRELLM----LAILGGFLLVFT----MATA 52 Query: 61 DLHVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 D + +E D++ I + +L L P + + I ++Q Sbjct: 53 DSARRFVAHVGGTMEHFDSIPTDMTSIYRIAVQTALEGVLLAAPLVFTGFVVTIACGMLQ 112 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--------TIS 165 + + P R+S G++R++ + N+V +KS K ++ G ++ ++ Sbjct: 113 TGFLYRPQAILPDITRLSPMRGLQRMFGMTNVVEMLKSLTKFVVFGVVLYAVAKGTLHVA 172 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 ++ML +S Y + + + +LD W+ + L+MS Sbjct: 173 PEAERWSMLRLVSELSSWFAYAVLVVLLVQCV--------IAILDDLWTRYHRIVGLRMS 224 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 Q+IKDE +Q+ G+P +K R K + R R R +M++A AT++ITNPTHYA+AL Y Sbjct: 225 FQDIKDEFRQTEGDPKVKGRLKQMRRRRARRRMLQAVKTATVVITNPTHYAVALSYESGA 284 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + AP +VA G + +A ++R A + +P+ P LAR+L +P++S IP +++ VA + Sbjct: 285 DSAPKIVASGTDELAARIRHAAEDAKVPVVANPPLARAL-HALPLDSEIPSEYFQPVAAI 343 Query: 346 I 346 I Sbjct: 344 I 344 >gi|294140216|ref|YP_003556194.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12] gi|293326685|dbj|BAJ01416.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12] Length = 377 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 98/357 (27%), Positives = 176/357 (49%), Gaps = 13/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + +++E A +G S+E S++L P I Sbjct: 1 MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGT-SAVLVSAAVGFAMVGPSIAGSLV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----LLLFMMFGIGSYLIQRIP 116 + L + + ++ D + +V + S+ L P LL+ ++ IG+ ++ I Sbjct: 60 TIMTTLFTMDREQVFDTNQMVLIW---SMIGRELAFPMASLMLLIALVAFIGNIVLGGI- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + P +++ G KR++ + LV K K ++V L+ + +L Sbjct: 116 TFSTKAFMPKTDKMNPMAGFKRMFGVQALVELTKGIAKFLVVALSAYFLLSFFFDEILAL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIK 234 + +YHA + V + ILL +T+ ++ I + W +LKM+KQE+KDE K Sbjct: 176 SRDHLPGNVYHALDLL--VWMFILLCSSTILIVVIDVPFQVWNHNKQLKMTKQEVKDEYK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G P +K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AK Sbjct: 234 DTEGKPEVKGKIRQMQREIAQKRMMSEVPNADVIVVNPEHYAVAVKYDAMKSTAPYVLAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G + +A K+R+IA EH I I P LAR+++ I+ IP + AVAQ++ ++ Sbjct: 294 GVDEVAFKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQ 350 >gi|30524900|gb|AAP34345.1|AF499777_13 HrcU [Xanthomonas axonopodis pv. glycines] Length = 357 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 168/340 (49%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DA +G P+S + + + + L+ + S G Y + + L+ Sbjct: 3 EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMK---SAGDY-FSDHMRALMT 58 Query: 68 SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 59 IGFDFPENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E+K+S G+P IK Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + A+P ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335 >gi|5679184|gb|AAD46898.1|AF160974_1 HrcU homolog [Xanthomonas campestris pv. glycines] Length = 357 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 168/340 (49%), Gaps = 11/340 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK+ DA +G P+S + + + + L+ + S G Y + + L+ Sbjct: 3 EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMK---SAGDY-FSDHMRALMT 58 Query: 68 SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 59 IGFDFPENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E+K+S G+P IK Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++ Sbjct: 237 GKRKEFAKDMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 R A+ IPI P LAR+L+ QV + A+P ++ VA Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335 >gi|255026794|ref|ZP_05298780.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-003] Length = 324 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 145/255 (56%) Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 ++++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ Sbjct: 59 GKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKA 118 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + I L+ + I ++ T++ + N L F + + + L IA + +LD Sbjct: 119 LLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDF 178 Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ N Sbjct: 179 FYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNN 238 Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH ++ +RY +T++ AP L+ KG++ +A +R++A +P+ LARS++ + Sbjct: 239 PTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPD 298 Query: 332 SAIPPVFYKAVAQLI 346 I YK V +++ Sbjct: 299 EYIQEDLYKDVIEVM 313 >gi|56964016|ref|YP_175747.1| flagellar biosynthesis protein FlhB [Bacillus clausii KSM-K16] gi|56910259|dbj|BAD64786.1| flagellar biosynthetic protein FlhB [Bacillus clausii KSM-K16] Length = 362 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 100/352 (28%), Positives = 182/352 (51%), Gaps = 12/352 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + KK +D +G P S++ + + A + L F P +++ L ++A Sbjct: 13 EEKTEKATPKKRQDTRKKGQVPKSQDVNTAFMLFAAFLLLSLFAGPRLFAA---LKEMMA 69 Query: 68 SATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 QR L +I L L++ +P + L ++ G + +Q + +K Sbjct: 70 DVFQRFLSLPLTAENIAALFNELTIEMGMAALPIMALTVLAGAFASFVQVGSLFTPEPMK 129 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 +++ +G KRI+S LV KS +KI+ +G + + Y + D + + S+ Sbjct: 130 LKLEKLDPIKGAKRIFSTRALVELGKSMLKIVFIGAAVAFVI---YANIGDVLLLSQKSV 186 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSYGNPI 241 A + M L L VL I +Q Y +++MSK++I+DE K G+P Sbjct: 187 EVGAASIGHLTVTMGLFAAVLLMVLAIPDYLYQRYDHEKQIRMSKKDIRDEHKTMEGDPK 246 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 I+ R+K +++M+ +A ++ITNPTHYA+ALRY Q + DAP++VAKG + +A+ Sbjct: 247 IRARRKQRQLEMSMNRIMQEVPKADVVITNPTHYAVALRYDQEQADAPIVVAKGVDYMAE 306 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ +A +H+IP+ E +LAR+++ V + I ++AVA+++ +Y K Sbjct: 307 RIKTVAKKHDIPLVENVALARAMYASVELMQPIHEDMFQAVAEVLAYVYRLK 358 >gi|293408345|ref|ZP_06652184.1| conserved hypothetical protein [Escherichia coli B354] gi|291471523|gb|EFF14006.1| conserved hypothetical protein [Escherichia coli B354] Length = 379 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 105/360 (29%), Positives = 182/360 (50%), Gaps = 23/360 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIVFLLTHLSLSA----SRLVIPGLLLFMMFGIGSYLIQRIPV 117 + + Q E I FL HL + + L +P LF G +L +P Sbjct: 62 ISVHQYAQEINNPEVIGQ--FLRHHLLILGKFILTLLPMPAAALFSSLVPGGWLF--LP- 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + P F ++S +GI R++S +L K VK ++V ++ ISL N+ L + Sbjct: 117 ---KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLG-L 172 Query: 178 SANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 A P + + + +V + +++ +F A +LD+ + + LKM+KQE+K+E Sbjct: 173 QALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMTKQELKEEY 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VA Sbjct: 230 KNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVA 289 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 290 KGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|114562373|ref|YP_749886.1| flagellar biosynthesis protein FlhB [Shewanella frigidimarina NCIMB 400] gi|114333666|gb|ABI71048.1| flagellar biosynthetic protein FlhB [Shewanella frigidimarina NCIMB 400] Length = 377 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 9/355 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D+ +TE P+SK++E + +G S+E + +LA + P I Sbjct: 1 MAESDSGQERTEDPTSKRLEQSREKGQVARSKELGTAAVLLAASVGFSMT-GPAIAKSLY 59 Query: 61 DLHVLLASATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 ++ + S + ++ D + + V+ + L+ + LL F+ F +G+ ++ + Sbjct: 60 NIMKQIFSMERDQIFDTNSMFRVWGVVGSELAGPLISFIALLAFVSF-LGNIVLGGMS-F 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ P +++ G KR++ LV K K +V L ++ +L S Sbjct: 118 SVKAFMPKGSKLNPMNGFKRMFGTQALVELTKGIAKFSVVALSAYFLLKFYFYDILTLSS 177 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK--LKMSKQEIKDEIKQS 236 + +YHA + + + ILL + L ++ I + W K LKM+KQE+KDE K + Sbjct: 178 DHLPGNVYHALDLL--IWMFILLCSSMLLIVIIDVPFQIWNHKKQLKMTKQEVKDEYKDT 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K R + + + + +MM A +I+ NP HYA+A++Y + + AP L+AKG Sbjct: 236 EGKPEVKGRIRQMQQEMAQRRMMTEVPNADVIVVNPEHYAVAVKYDVSRSSAPFLIAKGV 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A ++R+IA EHN+ I P LAR+++ ++ +P + AVAQ++ ++ Sbjct: 296 DDVAFRIREIAREHNVAIVSAPPLARAIYHTTKVDQQVPEGLFTAVAQVLAYVFQ 350 >gi|258624670|ref|ZP_05719605.1| flagellar biosynthetic protein [Vibrio mimicus VM603] gi|258583062|gb|EEW07876.1| flagellar biosynthetic protein [Vibrio mimicus VM603] Length = 375 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 185/357 (51%), Gaps = 24/357 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E+ + D KTE S++KI+ A G P +E F++ L +L F++ I+ Sbjct: 1 MNEHSSQD-KTEQASAQKIKKARQGGQVPRVKE---FTTAAIFLAVVLLFYAQLDHIWQS 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + S T++ L + +V L +++P + ++ +GS ++ + Sbjct: 57 MAGIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ P +++ GIKR++S +LV +KS +K++++ ++ L +N+ L + Sbjct: 117 RPANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYL-DNHLQPLLGMQ 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATL---------TVLDIGWSYHQWYSKLKMSKQEI 229 P +LIM +LF L V+DI + ++ +L+MSKQE+ Sbjct: 176 RLP--------LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQEL 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E KQ+ G P IK+R + I + R K+ + A +++TNPTHYA+AL+Y + +DAP Sbjct: 228 KEEFKQNEGRPEIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +VAKG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 288 FVVAKGVDETAIHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHIL 344 >gi|119469999|ref|ZP_01612804.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7] gi|119446709|gb|EAW27982.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7] Length = 376 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 187/359 (52%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 M+E D+ KTE P+ KKIE++ +G S+E ++F I + + L++ P I Sbjct: 1 MAE-DSGQEKTEEPTGKKIEESKKKGQVARSKELGTMFVLIFSAISLLMY--GPEIGKGL 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFM-MFG--IGSYLIQRI 115 ++ + S + + D + + + + + A L+ P + +F+ +F IG+ L+ Sbjct: 58 YNIMGRMLSLNRNETYDTTKMFAVWSSV---ADALIFPMAMFVFIILFAGIIGNTLLGGF 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + P ++S +G KR++ V K+ +K ++V + + + +L Sbjct: 115 N-FSWQAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFLVVASFAFFLINTFFDEILH 173 Query: 176 F-ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 I + P++I+ HA + + + + + + +D + H + +LKM+ QE+KDE K Sbjct: 174 LSIESAPNNII-HALEILSWMFLALSCTLVIIAAIDAPYQSHTHHKQLKMTLQEVKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK R + R + +MM+ A +++TNPTHY++AL+Y AP+++AK Sbjct: 233 NSEGDPQIKARIRQTQRQMSQKRMMQDVPDADVVVTNPTHYSVALKYDTERAGAPIVLAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A ++RK+A +++PI E P L R+L+ + IP + AVAQ++ ++ K Sbjct: 293 GVDELAMQIRKVAGGNDVPIVESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351 >gi|291276831|ref|YP_003516603.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] gi|290964025|emb|CBG39864.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] Length = 364 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 174/355 (49%), Gaps = 41/355 (11%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP-------GIYSVTS 60 K EAPS++KI+ A EGN S E F S + I+ +F P GIY Sbjct: 5 QEKQEAPSARKIQKAREEGNVAKSPELVAFVSFVIG-IFAVFGIFPFWLQNIKGIYITCL 63 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + + L L +++P L + G+ +IQ +L Sbjct: 64 QFFSMEFS--------LGNFFDLFLKLLWQTLLIILPVLGALLFAGVFGNIIQVGFLLAP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFM----KSFVKIILVGTIITISLTENYFTMLDF 176 ++P +++ G+K ++S L+ + K FV +L G I ++ F Sbjct: 116 KVLQPKLGKLNPIAGLKNLFSFKKLLEGLLITLKVFVAFLLGGAI-----------LIHF 164 Query: 177 ISANPH----SILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + P+ ++ A + K LI+I L+ + ++D Q+ L+MSKQE+ Sbjct: 165 LRQIPNVAMLNVFSQAIWVRDKALILIASLLVLFFVMAIIDFLIKKFQYTKSLRMSKQEL 224 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-A 288 KDE KQ GNP +K + + I KMM+A A +++TNPTHYA+ALR+ ND A Sbjct: 225 KDEYKQQEGNPEVKAKIRQIMMKNTMGKMMQAIPNADVVVTNPTHYAIALRF--APNDPA 282 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 P++VAKG + +A +++ IA E+ I I E P LAR+L+KQV + IP ++AVA Sbjct: 283 PIVVAKGIDHLAIRIKGIARENEIEIVENPKLARALYKQVDLEEPIPRELFEAVA 337 >gi|258611828|ref|ZP_05711674.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL R2-503] gi|258606467|gb|EEW19075.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL R2-503] Length = 300 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 145/255 (56%) Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 ++++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ Sbjct: 35 GKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKA 94 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + I L+ + I ++ T++ + N L F + + + L IA + +LD Sbjct: 95 LLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDF 154 Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ N Sbjct: 155 FYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNN 214 Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH ++ +RY +T++ AP L+ KG++ +A +R++A +P+ LARS++ + Sbjct: 215 PTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDEVPMITNRQLARSIYYTTNPD 274 Query: 332 SAIPPVFYKAVAQLI 346 I YK V +++ Sbjct: 275 EYIQEDLYKDVIEVM 289 >gi|152975183|ref|YP_001374700.1| flagellar biosynthesis protein FlhB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023935|gb|ABS21705.1| type III secretion exporter [Bacillus cytotoxicus NVH 391-98] Length = 348 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 106/353 (30%), Positives = 187/353 (52%), Gaps = 12/353 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S +P +L F + +Y+IQ + + +KP Sbjct: 62 FNQIG--KNADTTEYFYLMGILLLKVS---VPVFILVYAFHLFNYMIQVGFLFSSKIIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS ++L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDIVKSLFYMVLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIISQIKLIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ALRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVALRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI-YKIYHKKI 354 MR +A E IP+ E LARSL+ QV + AIP Y AV +++ Y I K+I Sbjct: 294 MRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTKQI 346 >gi|328468938|gb|EGF39898.1| translocation protein in type III secretion [Vibrio parahaemolyticus 10329] Length = 351 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTEQPTAKKLRDARKKGQVAKSQEI-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP K Sbjct: 63 LAYQGFQD--ALIDVAIAIAKEMAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + + Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPAVT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++I+ + + D + KLKMSK E+K E K+ G+P IK++++ Sbjct: 181 GVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M IA Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAIAR 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +P+ ++ LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVL 338 >gi|71281473|ref|YP_268257.1| flagellar biosynthesis protein FlhB [Colwellia psychrerythraea 34H] gi|71147213|gb|AAZ27686.1| flagellar biosynthetic protein FlhB [Colwellia psychrerythraea 34H] Length = 376 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/363 (27%), Positives = 189/363 (52%), Gaps = 18/363 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSV 58 M+++D+ + KTE P++KK+ DA +G S++ F ++ AC + L+ + + Sbjct: 1 MADSDSGE-KTEEPTAKKLTDARKKGQIARSKDLGTFFVLVGSACAMLLM---GKALANS 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----IGSYLIQR 114 +++ + S ++ + D++ L ++ +++ P L +F + IG+ L+ Sbjct: 57 MANMMSHMFSLSREEAMDVNA---LFKVINDGVYQIIPPLLWIFFIVMLAAFIGNTLLGG 113 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + + + + P ++S G KR++ + V +KS +K +V + + L+ + +L Sbjct: 114 MS-FSGDAMMPKASKLSPMAGFKRMFGVQAAVELIKSVLKFFVVFIVAFLLLSGLFEEIL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + HA ++ + +++ L I + V+D + +LKM+KQEIKDE K Sbjct: 173 GLSRETIPANFEHAITMLQWMFLVLALSIGIIVVIDAPYQVWNHNRQLKMTKQEIKDEHK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P IK R + + +MM+ + ++ITNPTH+++AL+Y APVL AK Sbjct: 233 GTEGSPEIKGRIRRTQYEMSQRRMMQDVPESDVVITNPTHFSIALKYDAAAGGAPVLSAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY---- 350 G + +A +R IA EH I I + P+LARSL+ + IP + AVAQ++ I+ Sbjct: 293 GVDEMALHIRTIAKEHQIEIIQSPALARSLYYTAEVGDDIPEELFAAVAQVLAFIFQLNE 352 Query: 351 HKK 353 HKK Sbjct: 353 HKK 355 >gi|170021382|ref|YP_001726336.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739] gi|169756310|gb|ACA79009.1| type III secretion exporter [Escherichia coli ATCC 8739] Length = 379 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 185/369 (50%), Gaps = 41/369 (11%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI--------YLLF----FF 51 + + + KTE PS++K+ A EG P S++ L +S+ A + Y F F Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62 Query: 52 SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIG 108 S Y+ + ++ + L + F+LT L + A+ L+ +PG LF+ Sbjct: 63 SVHQYAQEINNPQVIGQFLRHHLLILGK--FILTLLPMPAAALLSSLVPGGWLFLP---- 116 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 + P F ++S +GI R++S +L K VK ++V ++ ISL Sbjct: 117 ------------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRN 164 Query: 169 NYFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 N+ L + A P + + + +V + +++ +F A +LD+ + + LKM Sbjct: 165 NFAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKM 220 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 221 TKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQS 280 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A Sbjct: 281 RAAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAH 340 Query: 345 LIYKIYHKK 353 ++ + K Sbjct: 341 VLTYVLQMK 349 >gi|56419772|ref|YP_147090.1| flagellar biosynthesis protein FlhB [Geobacillus kaustophilus HTA426] gi|56379614|dbj|BAD75522.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426] Length = 360 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 133/231 (57%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K + R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P Sbjct: 127 LKMDWNRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPG 186 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 L K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+I Sbjct: 187 EALTVVGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLI 246 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R K R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K Sbjct: 247 KSRIKQKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMAMK 306 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++A H + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 307 IKEVAKTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|283834479|ref|ZP_06354220.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] gi|291070026|gb|EFE08135.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] Length = 379 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 182/360 (50%), Gaps = 23/360 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKARQEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVRESF 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVI-----PGLLLFMMFGIGSYLIQRIPVL 118 + + Q + D I L H L + ++ P LF G +L +P Sbjct: 62 ISVHQYAQ-NINDPDIIGQFLEHHLLILGKFILTLLPMPVAALFASLVPGGWLF--LP-- 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--- 175 + P F ++S +GI R++S ++LV+ K +K I++ ++ IS+ N L Sbjct: 117 --KKILPDFSKLSPLKGISRLFSTDHLVDTGKMTLKAIVLLVMLWISVRNNVAAFLGLQE 174 Query: 176 --FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 F A + ++ ++ + +++ +F A V+D+ + + LKM+KQE+K+E Sbjct: 175 LYFKQAISDGLALYS--SIMRNFVILFVFFA---VIDVPLAKKMFTKGLKMTKQEVKEEY 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K G P ++ R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VA Sbjct: 230 KNQEGKPEVRARIRRLQRQMAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVA 289 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + IA +R++A E NI I E P LARS++ +N IP Y+A+A ++ + K Sbjct: 290 KGTDEIALYIRQVAAESNIEIVEFPKLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|260574396|ref|ZP_05842400.1| type III secretion exporter [Rhodobacter sp. SW2] gi|259023292|gb|EEW26584.1| type III secretion exporter [Rhodobacter sp. SW2] Length = 361 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 171/357 (47%), Gaps = 25/357 (7%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 E+D+ + + E PS ++++ A +G P S + S ++ L+ + + + Sbjct: 4 GEDDSAEKEHE-PSQRRLDQAREKGQIPRSTDLSTAAAYGGLLLAAVALGEGSLRRIGDS 62 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI--------- 112 VLL + + L+ L L+ + GLL+ + + + + + Sbjct: 63 AAVLLDQSDR------------LSALMLTGGTAPLGGLLIAIGWAVAPFFLLPALAVFLA 110 Query: 113 ---QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 QR + + + + P R+S E K + N L F KSFVK++++ I+ + L +N Sbjct: 111 VFAQRAFIFSPDKLMPKLSRISPIESAKNKFGRNGLFEFAKSFVKLLVISVILGMFLMQN 170 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 +L + P S V + L ++L+ + LD W + + +MS++++ Sbjct: 171 MDDVLGALYLEPASATLVLLRLVVQFLFLVLIIATAIGALDYLWQRSEHLRRNRMSRKDM 230 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 DE K+S G+P K +++ ++M+ + A +I+ NPTHYA+AL++ + AP Sbjct: 231 MDEHKESEGDPHSKAQRRQRGYDIATNRMLADVATADVIVVNPTHYAVALKWDRAAKRAP 290 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 V VAKG + IA ++R+ A E +P+ +P AR+L V + I P Y+AVA I Sbjct: 291 VCVAKGVDEIAARIRERAAEAGVPMHRDPPTARALHASVEVGQEIRPEQYRAVAAAI 347 >gi|188586038|ref|YP_001917583.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350725|gb|ACB84995.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 363 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 185/356 (51%), Gaps = 24/356 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K ++ +G +++ L S++L + + ++ + D + A Sbjct: 15 EKTETPTPKHRRESRKKGQ--VAKSTELTSALLLMATFSTLYI---VFPYSFDRFMNFAK 69 Query: 69 ATQRKLEDISH----IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + I++ I LL + + + P +++ ++ G+ S L+Q +L + +K Sbjct: 70 QFWSNINTINYTMDEIHSLLITMMMEGAVFAAPVIIVAVLIGLISNLMQVGILLTGDPLK 129 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN-----YFTMLDF--I 177 P +R+ +G ++I+S +V KS K++++G I I + YF + I Sbjct: 130 PKLERLDPIKGFQKIFSKRAVVELTKSLFKMVVIGIIAYILFNNHMEHFPYFYDMTVMQI 189 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + + F V M LLF++ L + W + Q LKM+KQ++KDE KQ+ Sbjct: 190 AVEVGQLTWALIFRVG----MALLFLSILDYVYQVWEHEQ---NLKMTKQQVKDEHKQTE 242 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P ++++ K R + +MM A ++ITNP H A+AL+Y + + AP+++AKGQ Sbjct: 243 GDPQVRSKMKEKQREISKKRMMSEVPEADVVITNPVHIAVALKYDEGDT-APMVLAKGQG 301 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+++IA +HN+ + E LARSL+ V I IP Y+AVA+++ +Y K Sbjct: 302 HVARKIKEIAEDHNVVVMENRQLARSLYFSVEIGDFIPEELYQAVAEVLAFVYRLK 357 >gi|170725986|ref|YP_001760012.1| flagellar biosynthesis protein FlhB [Shewanella woodyi ATCC 51908] gi|169811333|gb|ACA85917.1| flagellar biosynthetic protein FlhB [Shewanella woodyi ATCC 51908] Length = 377 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 172/355 (48%), Gaps = 9/355 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + ++ E A +G S+E + +LA + + PGI + Sbjct: 1 MAENDSSQEKTEEATPRRREQAREKGQVARSKELGTSAVLLASAVGFVMA-GPGIAKALA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----IGSYLIQRIP 116 + L + + ++ D + + + + L L P L L IG+ ++ I Sbjct: 60 SIMTNLFTIDRAQVFDTNEMFLIWKFIGLE---LAFPILSLIAFLAVVSFIGNIVLGGI- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++ P ++S +G KR++ + LV K K +V L+ + +L Sbjct: 116 TFSVKAFMPKPDKMSPVKGFKRMFGVQALVELTKGIAKFSVVALAAYFLLSFYFDDILAL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + +YH+ + + I++ + V+D+ + +LKM+KQEIKDE K + Sbjct: 176 SREHLPGNVYHSLDLLAWMFILLCSSTLLIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDT 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AKG Sbjct: 236 EGKPEVKGKVRQMQREMAQRRMMSEVPNADVIVVNPEHYAVAVKYDVMKSTAPYVLAKGV 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R+IA EH I I P LAR+++ I IP + AVAQ++ ++ Sbjct: 296 DDVAFKIREIAREHEIAIVSAPPLARAIYHTTKIEQEIPEGLFTAVAQVLAYVFQ 350 >gi|269105053|ref|ZP_06157748.1| type III secretion inner membrane protein HrpY [Photobacterium damselae subsp. damselae CIP 102761] gi|268160688|gb|EEZ39186.1| type III secretion inner membrane protein HrpY [Photobacterium damselae subsp. damselae CIP 102761] Length = 352 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + S+++ L+ +LF F+ S S L +L + Sbjct: 4 EKTELPTPKKLRDARQKGQVAKSQEV-VSSALILALVAVLFAFADYYMSHISALLLLPSE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D ++ + ++ L+ P L++ + I S + Q + + VKP K Sbjct: 63 LAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L +N T+L + + Sbjct: 121 KINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRDNLNTLLQIPACGLECVPTIT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V++++I+ + + D + +LKM+K E+K E K+ G+P IK++++ Sbjct: 181 GVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M IA+ Sbjct: 241 LHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAIAH 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +P+ ++ LAR+L+ +N IP + A+++ Sbjct: 301 EEGVPVMQKVPLARALYADGQLNQYIPGDLIETTAEIL 338 >gi|254488460|ref|ZP_05101665.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101] gi|214045329|gb|EEB85967.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101] Length = 361 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/354 (29%), Positives = 174/354 (49%), Gaps = 18/354 (5%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF--SPGIYSVT 59 E+D D EA + K +E A +G+ I++ L ++ +++ F + S GI ++ Sbjct: 3 GEDDDSDKSFEATAEKLLE-ARRKGD--IAKSTDLMTAAGYAGLFVAFAYVGSEGIALIS 59 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI----PGLLLFMM---FGIGSYLI 112 + L VLL +L DI F + AS L+I P L +F++ + + Sbjct: 60 TALMVLLDQPD--RLIDI----FFDGSAAAPASGLIISIILPALPIFLLPAIAVLVAIAA 113 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 QR V + + P R+SL K + N L F KSF K+ + + + + N Sbjct: 114 QRAFVFAPSKIAPKLSRISLISNAKNKFGRNGLFEFAKSFFKLCIYSICLVLFIRANLHE 173 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 M+ + +P S + L++ +L AT+ +D W + + K +MS++EI+DE Sbjct: 174 MIAALQTDPASAISLMIEICLSFLLVTILISATIGGIDALWQHFEHLRKNRMSRKEIQDE 233 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K S G+P +K ++ A + +MM +A +II NPTHYA+AL++ + +APV V Sbjct: 234 QKNSEGDPHLKQERRQRAMIVSQSQMMADVPKADVIIVNPTHYAVALKWSRLPGEAPVCV 293 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AKG + IAK +R E +P+ +P AR+L I I P ++AVA I Sbjct: 294 AKGVDEIAKAIRLKGAEAGVPLHSDPPTARALHATTDIGDMIAPEHFQAVAAAI 347 >gi|154249642|ref|YP_001410467.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum Rt17-B1] gi|154153578|gb|ABS60810.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum Rt17-B1] Length = 384 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/353 (28%), Positives = 186/353 (52%), Gaps = 17/353 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 A +KTE + +K + A EG PISRE S + A ++++L + L Sbjct: 33 ADPDKTEKATPRKRQKAREEGQVPISRELVSGLGFLFASMVFIL---------LGKRLID 83 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL-------IQRIPV 117 L ++TQ E + + L + AS+ P L+ + +G+ L +Q + Sbjct: 84 ALITSTQSVFEISDNDIRTLEDFIIYASQTFRPAFLVVAILVLGTALFSLIIGLLQTRFL 143 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +K R++ G+KR++S+ +L +K+ +K+ ++G + + N+ +L + Sbjct: 144 FTFKPLKMDLNRLNPITGLKRMFSLRSLFELLKAILKLAIIGFVGYSVIKGNFDKVLLTV 203 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 ++ + + +++I + + +++ D +S +++ +KM+KQEIK+E K+ Sbjct: 204 DSSLIDGTLIMWGVLSELIIKCGIALIVVSIADYYYSRYEYEQNIKMTKQEIKEEFKEIE 263 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK RQ+ I H+MM+ +A+++ITNPTH+A AL+Y E+ AP LVAKG + Sbjct: 264 GNPEIKRRQRQIMMQFAMHRMMQEVPKASVVITNPTHFACALKYDPEEDFAPKLVAKGVD 323 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A ++ IA ++++PI P LAR ++ + IP YKAVA+++ +Y Sbjct: 324 KVALRIIDIARKNDVPIVRNPRLAREIYYSTELGDIIPEKLYKAVAEVLAYVY 376 >gi|91200239|emb|CAJ73283.1| similar to flagellar biosynthetic protein FlhB [Candidatus Kuenenia stuttgartiensis] Length = 349 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 196/356 (55%), Gaps = 17/356 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG--IYSVTSDLH 63 A KTE P+ K+I + +G+ S + SS +A L+ L ++ G +Y+ ++ Sbjct: 2 ADTEKTEQPTGKRISEVRQKGSVAQSPD---LSSAIAILVGFLLLYALGNIMYAGMKEIT 58 Query: 64 VL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 V L + +Q+ + + ++ ++ +SA L+ L ++ I SY+ Q + L Sbjct: 59 VFTLQNLSQKDITPDIIVEKIIYYIYVSAKILLPILGGLLIVGLIVSYM-QTGLLFTLKP 117 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP ++++ G+K+++++ + V + S VK++L+G I + + + LD N Sbjct: 118 LKPDLTKLNVISGVKKLFNVQSFVKLLFSVVKLLLIGGIGILYIKKE-LAKLD----NLI 172 Query: 183 SILYHAFFTVRKVLIMILLF---IATLTVLDIGWSYHQWYSK--LKMSKQEIKDEIKQSY 237 I FF + L L+ IA + + + + Y +W K +KMSK+E+KDE KQ+ Sbjct: 173 DIGIAQFFILTTKLTFGLVMRVSIALVILAMVDYIYQKWQYKRGMKMSKKEVKDERKQAE 232 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P+IK++ +S +M A +A +++TNPTHYA+AL+Y + AP +VAKG + Sbjct: 233 GDPVIKSKIRSAQIQMALKRMASAIPKADVVVTNPTHYAVALKYDRKSMHAPKVVAKGAD 292 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA K+++IA + IPI EE SLAR+L+K V + IP Y AVA+++ +Y K Sbjct: 293 YIALKIKEIAKINKIPIVEERSLARTLYKTVDVGKEIPQKLYYAVAKVLSYVYGLK 348 >gi|331645394|ref|ZP_08346498.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] gi|331045556|gb|EGI17682.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] Length = 379 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 183/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q+ E I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQQINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLS----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI R++S +L K VK ++V ++ ISL N Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + L + A P + + + +V + +++ +F A +LD+ + + LKM+ Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y + Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|91792697|ref|YP_562348.1| flagellar biosynthesis protein FlhB [Shewanella denitrificans OS217] gi|91714699|gb|ABE54625.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans OS217] Length = 377 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 175/357 (49%), Gaps = 13/357 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE P+ +++E A +G S+E + +LA + F G S Sbjct: 1 MAENDSSQEKTEEPTGRRLEQAREKGQIARSKELGTAAVLLASSVG---FMMTGPALAKS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ T + + I + + + L IP L M + S+L I + + Sbjct: 58 LFRIMEQILTMERAQ-IFDTNSMFRVWGVIGTELAIPLLSFIGMLAVVSFL-GNIVLGGI 115 Query: 121 N-HVK---PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 N VK P +++ G KR++ LV K K +V L + +L Sbjct: 116 NFSVKAFMPKGSKMNPMSGFKRMFGTQALVELTKGIAKFSVVAFSAYFLLDFYFVDILQL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIK 234 + + + YHA + V + ILL +TL ++ I + W +LKM+KQEIKDE K Sbjct: 176 SNDHLPNNAYHALDLL--VWMFILLCSSTLLIVIIDVPFQIWNHNKQLKMTKQEIKDEYK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G P +K R + + R + +MM +A +I+ NP HYA+A++Y + + AP +VAK Sbjct: 234 DTEGQPEVKARVRQMQREMAQKRMMAEVPKADVIVVNPEHYAVAVKYDASRSTAPFVVAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G + +A ++R IA EH++ I P LAR+++ ++ +P + AVAQ++ ++ Sbjct: 294 GIDEVAFQIRAIAREHDVAIVSAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQ 350 >gi|28898449|ref|NP_798054.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|260365107|ref|ZP_05777678.1| translocation protein in type III secretion [Vibrio parahaemolyticus K5030] gi|260876610|ref|ZP_05888965.1| translocation protein in type III secretion [Vibrio parahaemolyticus AN-5034] gi|260895029|ref|ZP_05903525.1| translocation protein in type III secretion [Vibrio parahaemolyticus Peru-466] gi|260900960|ref|ZP_05909355.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ4037] gi|28806666|dbj|BAC59938.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|308085922|gb|EFO35617.1| translocation protein in type III secretion [Vibrio parahaemolyticus Peru-466] gi|308093607|gb|EFO43302.1| translocation protein in type III secretion [Vibrio parahaemolyticus AN-5034] gi|308110774|gb|EFO48314.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ4037] gi|308111655|gb|EFO49195.1| translocation protein in type III secretion [Vibrio parahaemolyticus K5030] Length = 351 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTEQPTAKKLRDARKKGQVAKSQEI-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP K Sbjct: 63 LAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + + Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPAVT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++I+ + + D + KLKMSK E+K E K+ G+P IK++++ Sbjct: 181 GVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M IA Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAIAR 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +P+ ++ LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVL 338 >gi|297530588|ref|YP_003671863.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3] gi|297253840|gb|ADI27286.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3] Length = 360 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 133/231 (57%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K + R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P Sbjct: 127 LKMDWNRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPG 186 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 L K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+I Sbjct: 187 EALTVVGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLI 246 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R K R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K Sbjct: 247 KSRIKQKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALK 306 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++A H + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 307 IKEVAKTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|323191512|gb|EFZ76773.1| flhB HrpN YscU SpaS family protein [Escherichia coli RN587/1] Length = 379 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 184/367 (50%), Gaps = 37/367 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F V Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62 Query: 64 VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110 + A + D+ H++ F+LT L + A+ L+ +PG LF+ Sbjct: 63 SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 + P F ++S +GI R++S +L K VK ++V ++ ISL N+ Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNF 166 Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 L + A P + + + +V + +++ +F A ++D+ + + LKM+K Sbjct: 167 AAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A ++ Sbjct: 283 AAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342 Query: 347 YKIYHKK 353 + K Sbjct: 343 TYVLQMK 349 >gi|317182082|dbj|BAJ59866.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F57] Length = 358 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/356 (29%), Positives = 178/356 (50%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-------SPGIYSV 58 A + KTE PS+KKI+ A EGN P S E +LA LI + FF S V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EHNI I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHNIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|255022047|ref|ZP_05294053.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] gi|254968533|gb|EET26089.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] Length = 380 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 116/377 (30%), Positives = 188/377 (49%), Gaps = 60/377 (15%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + KTE S K+++DA +G P S++ + A L+ +++ T+ Sbjct: 1 MSE---AEEKTEKASQKRLDDAKKDGKVPRSQDWT------ASLV---------LFAATA 42 Query: 61 DLHVLLASATQRKLEDISHIVFLLT----HLSLSASRLVI----PGLLLFMMFGIGSYLI 112 +L A++ E +S +V L+ H R ++ P ++F+MFG G L+ Sbjct: 43 ---LLWAASGSWGTEILSRMVVGLSVSSLHFRADWQRTILQEAAPLFVVFLMFG-GVILV 98 Query: 113 QRIPVLNLNH---VKPS----FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 I + L P + R+S G+KR ++ + VK L+G + + Sbjct: 99 SAIASILLVGGWVWSPGKLWEWDRLSWTSGLKRPFTKKGFSVLWEDSVKTGLLGVCMGLI 158 Query: 166 LTEN---YFTMLDF-----ISANPHSILYHAFFTVRKVLIM---ILLFIATLTVLDIGWS 214 + +F +LD IS +IL FF +L++ I F+ L+ Sbjct: 159 VWGQKGVWFALLDIPPRRAISLGA-AILVKDFFIFASLLLVPGAIDWFLQRRFFLE---- 213 Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274 KMSKQ+IKDE K+ GNP+IK+R + + R R +MM++ +A++++ NP H Sbjct: 214 ------SQKMSKQDIKDEHKEVDGNPLIKSRIRRLQRRIARMRMMKSVEKASVVLINPEH 267 Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 YA+ALRY ++ P++ AKG + IA K+R+IA H +PI E PS+ARSL+K I I Sbjct: 268 YAVALRYTESMT-VPIVTAKGIDTIALKIREIAKIHGVPILEAPSMARSLYKVCDIGDLI 326 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA ++ I H Sbjct: 327 PAGLYEAVAIVLAYIDH 343 >gi|237751072|ref|ZP_04581552.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879] gi|229373517|gb|EEO23908.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879] Length = 372 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 113/357 (31%), Positives = 180/357 (50%), Gaps = 28/357 (7%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KT APS +KI+ A EG+ S + ++ L+ L F P + L+V Sbjct: 2 AEEEKTHAPSQRKIQKAREEGSVAKSPDLVGLVGLVVGLMLLFIIF-PFWVKIFKGLYV- 59 Query: 66 LASATQRKLEDIS-HIVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 T+ L D + H +F +T L + L +P M+ GI + Q +L+ + Sbjct: 60 --ECTKLFLVDFNMHTIFAITLTILKVAALCAMPFFFALMVAGIIGNVAQFGFLLSFKII 117 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT----ISLTENYFTMLDF--- 176 KP +++ +G K ++S+ L++ G IIT I+ +F + F Sbjct: 118 KPKVDKINPIKGAKNLFSLKKLLD-----------GFIITLKVFIAFAVGFFIFVGFLDE 166 Query: 177 ---ISANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 IS +P F+ +LI LLF+ + +LD +Q+ L+MSKQE+KDE Sbjct: 167 VANISMSPLKEQLTWFYQKALILIGALLFLFLVMGILDFLIKRYQYIKSLRMSKQELKDE 226 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 KQ GN +K + + I +KMM A A +++TNPTHYA+ALR+ APV+V Sbjct: 227 FKQQEGNQEVKAKIRQIMMKNAMNKMMSAIPSANVVVTNPTHYAVALRFNSETESAPVVV 286 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 AKG + +A +++ IA EH I I E P LAR L++ V ++ IP ++AV +L ++ Sbjct: 287 AKGIDHLAVRIKGIAREHEILIIENPPLARELYRLVDVDRMIPGEMFEAVVELFQQV 343 >gi|39995534|ref|NP_951485.1| flagellar biosynthesis protein FlhB [Geobacter sulfurreducens PCA] gi|39982297|gb|AAR33758.1| flagellar biosynthetic protein FlhB [Geobacter sulfurreducens PCA] gi|298504535|gb|ADI83258.1| flagellar biogenesis protein FlhB [Geobacter sulfurreducens KN400] Length = 352 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 192/353 (54%), Gaps = 14/353 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +KTE P++KK+++A +G P SR+ + +++A ++ L ++ G + T+ Sbjct: 2 SDDKHSKTEKPTAKKLDEAKKKG-VPHSRDLTSTVTLIAAMVAL---YTTGGFMFTTLKR 57 Query: 64 V---LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LL S L + S + LL L L +V+P +L+ ++ G+ + ++Q +N Sbjct: 58 TSGELLGSMGTFHLTEAS-VEHLLIKLFLVFLSVVMPFMLVVVISGLATTMVQVGFSMNS 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDFI 177 + +++ +++++ ++LV +K+ +KI++VG + I + + D Sbjct: 117 ERITFKLDKLNPVTNAQKLFNKDSLVEMLKAVLKIVIVGYMSYKIMRDEMDGLLFLADTD 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 A + H F K++I + L VLD+ + ++ LKM+KQE+KDE K+S Sbjct: 177 LAGILEVFKHLAF---KLVIHTCGVLLILGVLDLAFVKWRFIDNLKMTKQEVKDEHKESE 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K + + + + + ++ + A +++TNPTHYA+AL+Y + AP+++AKG + Sbjct: 234 GDPKVKGKIRQMQFQQAQKRLRKVIPTADVVVTNPTHYAVALKYERETMAAPLVLAKGVD 293 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A+ ++ IA E+N+ + E LAR L+ QV IP Y AVA+++ +Y Sbjct: 294 HMAQTIKAIARENNVMLVENRFLARELYAQVKEGQPIPESLYTAVAEVLAYVY 346 >gi|253990145|ref|YP_003041501.1| flagellar biosynthesis protein FlhB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639018|emb|CAR67632.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781595|emb|CAQ84758.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica] Length = 383 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE P+ K E A EG SRE SSIL L + G S+ +L Sbjct: 3 EDSDLEKTEEPTPHKREKARKEGQIARSRE---LSSILMLTSGLSLLWLSG-QSIAHELS 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +++ + + +V + L A ++P ++ + + + V + Sbjct: 59 LMVFEGFNFDHSMVSNDKQMVQQIGRLLRQAVWALLPVFAGLVLVALSAPALLGGLVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+++ G+KRI+S+N L K+ +K VG + L N+ +ML I+ Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPSMLRLIAQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A + +++ + + D+ + + KL+M++QEIKDE K+ G+P Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +IA Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALQYDEKQMSAPKVLAKGAGIIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++ E+ IP+ E P LAR+L++ + IP Y AVA+++ +Y K Sbjct: 299 LRIKEMGTENRIPLLEAPPLARALYRHSEVGGHIPATLYAAVAEVLAWVYQLK 351 >gi|149191144|ref|ZP_01869402.1| flagellar biosynthetic protein [Vibrio shilonii AK1] gi|148834982|gb|EDL51961.1| flagellar biosynthetic protein [Vibrio shilonii AK1] Length = 382 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/350 (27%), Positives = 183/350 (52%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ +K+E PS K+ A EG P ++E SS+ LI ++ ++ I + Sbjct: 1 MSEHQDSGDKSEQPSQHKLSKARREGQVPRAKE--FVSSV--TLISVVAYYVLNIDMIKQ 56 Query: 61 DLHVLLASATQRKLEDISHI---VFLLTHLSLSASRLVIPGLLLFMMFGI-GSYLIQRIP 116 L + Q + ISH V LL S L P L+ ++ I GS L+ Sbjct: 57 TFIELFLVSFQFDTQTISHWMTSVELLGTALFSMVMLFFPLLIYQIIAAIFGSTLLGGW- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 +L+ + + P +++S +GIKRI+S ++V K+ K+ L +++ ++ + + Sbjct: 116 ILSPSLLTPKLEKISPIKGIKRIFSTQSVVELFKNVFKVTLFFSLLYWVISSYISVITNL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 +SA+ ++++ + L +LL + + D + H++ ++KM+KQE+KDE K+ Sbjct: 176 VSAHFDTVVFTVATITIEYLGYLLLIVLIFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQ 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K R + I + E +A +++TNPT YA+AL Y T+ +AP +VAKG+ Sbjct: 236 EGRPEVKARIRQIQTQNAKRGANERVPKANVVLTNPTQYAVALIYDLTQAEAPFVVAKGK 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +A +R++A +H++ + E L R+++ ++ +P + A+A ++ Sbjct: 296 DEVAVYIRELAAKHSVEVVESAELTRAIYNTTQVDQMVPNQLFVAIAHIL 345 >gi|163802012|ref|ZP_02195908.1| translocation protein in type III secretion [Vibrio sp. AND4] gi|159174153|gb|EDP58961.1| translocation protein in type III secretion [Vibrio sp. AND4] Length = 350 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 177/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTELPTPKKLRDARKKGQVAKSQEV-VSSALILALIAVLFAFADYYMSHISALLLLPSK 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + D ++ + ++ L+ P L++ + I S + Q + + VKP K Sbjct: 63 LAYQGFHD--ALIDVAIAIAEEIIYLLAPILIVAALVAIMSNMAQFGLLFSGESVKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +V+ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + + Sbjct: 121 KVNPAEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPAIT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V++++I+ + + +D + +LKMSK E+K E K+ G+P IK++++ Sbjct: 181 GVLVKQLMIISSVGFIVIAAVDYAYQKFNHTKQLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + R+ +++TNPTH A+ L Y + E P++ K + +AK+M IA Sbjct: 241 LHQEMQSSNQRDNVKRSNVLVTNPTHIAIGLYYKKDETPLPIITLKETDAMAKRMIAIAR 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ ++ LAR+L+ ++ IP ++ A+++ Sbjct: 301 EEGIPVMQKVPLARALYADGQLDQYIPGELIESTAEIL 338 >gi|42524691|ref|NP_970071.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100] gi|39576901|emb|CAE78130.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100] Length = 353 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 196/371 (52%), Gaps = 37/371 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLL--FFFSPGIY 56 M+E++ K+E + + E+ GN ++E + +LA +Y L FFF +Y Sbjct: 1 MAEDNG--EKSEEATDARREEFRKRGNVAHTKELASAVMLLAAAGGVYALGRFFFKE-MY 57 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 V H + E + + + A L+ P LL + G S ++Q I Sbjct: 58 EVFQ--HSFGDDMVKMVRE--GNFTEAAQYCGMKAMILIAPVLLFAGIIGAASSIVQ-IG 112 Query: 117 VLNL-NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 L + + V P+F++V+ EG KR++S+ +V +KS +K+ V ++ YF + Sbjct: 113 FLQVEDAVSPNFEKVNPVEGFKRVFSMRAVVEALKSILKMGAVAMVL-------YFLLRS 165 Query: 176 FISANPHSILYH-----AFFTVRKVLIMILLFIATLTVLDIGWSY-HQWYS---KLKMSK 226 ++ P+ + Y A+ V +++ +L + + ++ G Y +Q + K+ M+K Sbjct: 166 EVTQVPYMLTYSIDQIIAYIGV--IVVKLLGGVGAVMLVIAGADYFYQRFDLEKKMMMTK 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E KQ G+P+IK+R + I R +MM +A ++ITNPTH A+ L+Y T+N Sbjct: 224 QEVKEEHKQREGDPMIKSRIRRIQREMASKRMMSEIPKADVVITNPTHIAVVLKY--TDN 281 Query: 287 -DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VA G + +A+K+++IA E+N+PI E LAR++FK + I IP + AVA++ Sbjct: 282 LPAPQIVAMGADHVAEKIKEIARENNVPIVENKPLARTIFKTLKIGQVIPRELFVAVAEV 341 Query: 346 ---IYKIYHKK 353 +Y++ KK Sbjct: 342 LSYVYRLRRKK 352 >gi|251797425|ref|YP_003012156.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] gi|247545051|gb|ACT02070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] Length = 365 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 193/353 (54%), Gaps = 17/353 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----FFSPGIYSVTSDL- 62 KTE + KK ++A +G I++ L SS++ + F ++ I SV +L Sbjct: 16 EKTEKATPKKTQEARKKGQ--IAKSNDLPSSMILLFTFATFAALGSYYKTRIMSVFQELF 73 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 + L T ++I+ L L++ + P + ++ I ++Q +L Sbjct: 74 DNWLTMDVT------TANIMPLFDKLAVDMLMFLAPIFAIVVIVAILGNVVQFGFLLTGE 127 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +KP F +++ G K+I+S+ +V F+KS +K++++G ++ ++ ++ +L S + Sbjct: 128 SLKPKFSKLNPINGFKQIFSMRTVVEFLKSILKLLIIGILVYRAIWSDWDKILVLSSLSV 187 Query: 182 HSIL-YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I + A TV K+ + + L D + ++ L+MSKQ+IKDE K+S G+P Sbjct: 188 QQIFSFTAGLTV-KLGLETGAVLVILAFADYMYQRYEHAKSLRMSKQDIKDEYKKSEGDP 246 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK + + R +MM+ +A ++ITNPTH+A+AL+Y ++ +AP+++AKG + +A Sbjct: 247 LIKGKIRERQRRMAMQRMMQEVPKADVVITNPTHFAIALQYDASKMEAPLIIAKGMDHLA 306 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH + + E LAR+L+++ I +IP ++AVA+++ +Y K Sbjct: 307 LRIREVAKEHGVVMMENKPLARALYERADIGDSIPADLFQAVAEVLAAVYKMK 359 >gi|160880828|ref|YP_001559796.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans ISDg] gi|160429494|gb|ABX43057.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans ISDg] Length = 373 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 187/351 (53%), Gaps = 9/351 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDLHVL 65 KTE ++KK+EDA EG S++ S +LA + + F + G S + Sbjct: 25 EKTEEATTKKLEDARKEGQVARSQDLITASGLLALFMVIKLFSGYIAGGFLDAFSKSYKE 84 Query: 66 LASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + + E++++ + L+ + ++ + +P + ++ + Q L + Sbjct: 85 IETLAK---EEMTYQIGSKLMNQMGINILLICLPVFITGVVVAFVVNIFQVKWKLTGKPL 141 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPH 182 +P F +++ G K++ S++ ++ +KS +K+ ++ I+ +L + + L + N Sbjct: 142 QPKFNKINPLSGFKKMLSMDKIMELVKSIIKVGIIIYIVYNALKDELGKLYLLYEMGNLE 201 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + V + I I + + + D + ++ ++M+KQEIKDE KQS G+P I Sbjct: 202 VVIAYIGSIVLDLGIKISVLFIVVGLADFIYQKIKFKKDMRMTKQEIKDEFKQSEGDPQI 261 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++ K R + +MM+ A ++ITNPTH+A AL+Y + ++AP+L+AKG +L+A K Sbjct: 262 KSKIKQKMRQASQRRMMQRLPEADVVITNPTHFACALKYDKEVSEAPILIAKGADLLAAK 321 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ IPI E LAR L+ V I S IP Y+ VA+++ +Y K Sbjct: 322 IKEIAKENEIPIVENKPLARMLYYNVDIESEIPGELYQMVAEVLAYVYSLK 372 >gi|27550054|gb|AAO18037.1| LscU [Photorhabdus luminescens] Length = 351 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 177/339 (52%), Gaps = 5/339 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S E S IL LI ++ S S L ++ A+ Sbjct: 4 EKTEKPTPKKLRDARKKGQVTKSNEVVSTSLILG-LIGMMMVMSEYYLEHLSKLMLIPAN 62 Query: 69 ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + ++H+V +L L +P L + + + S+ Q +L+ + +KP Sbjct: 63 LLDKPFPQALNHVV---ENLMQELVYLCLPILSVSALLSLASHFAQYGFLLSGHSIKPDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+++ EG KRI+SI +LV F+KS +K+ L+ T++ ++L N +L I Sbjct: 120 KKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWVTLAGNLQALLYLPECGEKCITPV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +++ + + +++ D + ++Q +L+MSK EIK E K+S G+P IK++++ Sbjct: 180 LGMMLTQLMTVCGIGFIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + M + +++I+ NPTH A+ +RY + E P++ K + A ++R+IA Sbjct: 240 QFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRIA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ + LAR+L++ I+ IP +A A+++ Sbjct: 300 EEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVL 338 >gi|238752885|ref|ZP_04614350.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380] gi|238708924|gb|EEQ01177.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380] Length = 377 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/353 (28%), Positives = 172/353 (48%), Gaps = 33/353 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+E P++ K+ A +G+ P S++ ++ + ++A LI L F Y L S Sbjct: 7 EKSEKPTTGKLTKARKKGDIPRSKDVTMAAGLVASLITLTLFMP--YYKELIKESFLAVS 64 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV----------- 117 +++D + + LL +F G +LI IP+ Sbjct: 65 RMASRMDDPT----------------ALEQLLRINLFIFGKFLITLIPIPLASIVATLIP 108 Query: 118 --LNLNHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 N VK P K++S GIK+I+S +N +K K +V + I + + + Sbjct: 109 GGWNFTPVKLIPDLKKLSPIAGIKKIFSASNGTEVLKMLAKCSIVLYTLYIMVNNSLADL 168 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L + + F +L+ + I V+DI S + + K+KM+KQE+K E Sbjct: 169 LRLQALPLLEAITEGFSLYHGILVYFITIIVIFAVIDIPLSTYLFKKKMKMTKQEVKQEH 228 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + GNP IK R + + R ++ ++ A +IITNPTH+++AL+Y + AP +VA Sbjct: 229 KSNDGNPEIKARVRQLQRQFSMGQINKSVPNADVIITNPTHFSVALKYSPEKASAPYIVA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG++ IA +R +A ++NI I E P LAR+++ +N +P Y+A+AQ++ Sbjct: 289 KGKDDIALYIRSVAEKNNIEIVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVL 341 >gi|170683079|ref|YP_001742349.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5] gi|170520797|gb|ACB18975.1| lateral flagellar export/assembly protein LfhB [Escherichia coli SMS-3-5] Length = 379 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 184/367 (50%), Gaps = 37/367 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F V Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62 Query: 64 VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110 + A + D+ H++ F+LT L + A+ L+ +PG LF+ Sbjct: 63 SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 + P F ++S +GI R++S +L K VK ++V ++ +SL N+ Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNF 166 Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 L + A P + + + +V + +++ +F A ++D+ + + LKM+K Sbjct: 167 AAFLG-LQALPFKLAINDGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A ++ Sbjct: 283 AAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342 Query: 347 YKIYHKK 353 + K Sbjct: 343 TYVLQMK 349 >gi|85058003|ref|YP_453705.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] gi|84778523|dbj|BAE73300.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] Length = 387 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 174/359 (48%), Gaps = 35/359 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFFF 51 K+EAP+ +++ A EG P S+E + + ++ F Sbjct: 8 EKSEAPTPHRLQKARKEGQVPRSKELVSWLMLLSGWSLLWLAGGHLAQGMGLMLESGLTF 67 Query: 52 SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 S + + D H LLA + + + L+ ++L A+ P L+ +MF Sbjct: 68 S---FHINGDRHWLLAQFSGLVRQALLACAPLILGVTLVAAG--APMLIGGVMF------ 116 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 + V KR++ G+KR++S+ + F+K+ K+ LVG +L + Sbjct: 117 -------SSKAVSLDLKRLNPFSGLKRLFSMQMIAEFIKTLFKVCLVGGACGTALWFVWP 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M PH ++ + + + +++I+L + + DI + KL+MS+ +I++ Sbjct: 170 RMTQLAQGAPHRVMAESLSLISQCVLVIILALIPVVGFDILYQLFSHMKKLRMSRHDIRE 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K+ G+P +K+ + R + + +MM+ ++A ++I NPTHYA+AL+Y Q P L Sbjct: 230 EYKEQEGDPQLKSLIRQRQRQQAQQRMMQDVAKADVVILNPTHYAVALKYEQMRMTTPRL 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +AKG +A +R+ A +H IP P LAR+LF+ I SAIP Y AVA+++ +Y Sbjct: 290 LAKGAGAVALNIRQRAEQHRIPTLVAPPLARALFRHCEIGSAIPVALYGAVAEVLAWVY 348 >gi|269963167|ref|ZP_06177502.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832131|gb|EEZ86255.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 350 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 177/347 (51%), Gaps = 21/347 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTELPTPKKLRDARQKGQVAKSQEI-VSSALILALITVLFAFADYYMSHISALLLLPSE 62 Query: 69 ATQRKLEDI---------SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + +D +V+LL + L A+ L+ +M +G + + + Sbjct: 63 LAYQGFQDALLDVAIAIAKEMVYLLAPIILVAA-------LIAIMANMGQFGF----LFS 111 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 VKP K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + Sbjct: 112 GESVKPDIKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLKGNLNTLLQIPTC 171 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + +++++I+ + + D + +LKM+K E+K E K+ G+ Sbjct: 172 GLECVPTITGVLIKQLMIISAVGFIVIAAADFAYQKFHHTKQLKMTKDEVKREYKEMEGS 231 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK++++ + + + R+ +++TNPTH A+ L Y + E PV+ K + + Sbjct: 232 PEIKSKRRQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAM 291 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AK+M IA E IP+ ++ LAR+L+ +N IP +A A+++ Sbjct: 292 AKRMIAIAKEEGIPVMQKVPLARALYSDGQLNQYIPGDLIEATAEIL 338 >gi|260779326|ref|ZP_05888218.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] gi|260605490|gb|EEX31785.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] Length = 375 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/348 (28%), Positives = 181/348 (52%), Gaps = 6/348 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 MSE + D KTE S +KI+ A EG P ++E + + LA +Y F+S P I+ Sbjct: 1 MSEQSSQD-KTEKASPQKIKKARQEGQIPRAKEFTTAAIFLAVAVY---FYSQLPVIWES 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + + T++ L + +V L H L++P ++ + + S ++ + Sbjct: 57 IAGIFRFNMTLTKQDLANPKQMVEQLGHSLGMIITLLLPMFVVIIAVTLASTMVLGGWMF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 L +V P +++ GIKR++S +LV +KS +K++++ ++ L + +L Sbjct: 117 RLANVFPKLSKLNPLSGIKRMFSTRSLVELLKSTLKVLVIFGVLYAYLDNHLQPLLGMQR 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + + L+M+ + V+DI + + +LKM+KQE+K+E K + G Sbjct: 177 LSLEQGVVNVMQILFDGLLMMGFALLLFGVIDIPYQRWEHMKELKMTKQELKEEYKNNEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 P +K R + I + R K+ + A ++ITNPTHYA+A++Y +DAP +VAKG + Sbjct: 237 RPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVAMKYDPALSDAPFVVAKGVDE 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +++IA E+ + I P L RS++ I A+P Y AVA ++ Sbjct: 297 TAMHIQRIARENQVEIINSPPLTRSIYYTTAIEQAVPSQLYIAVAHIL 344 >gi|261419437|ref|YP_003253119.1| flagellar biosynthesis protein FlhB [Geobacillus sp. Y412MC61] gi|319766252|ref|YP_004131753.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52] gi|261375894|gb|ACX78637.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC61] gi|317111118|gb|ADU93610.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52] Length = 360 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 127/220 (57%) Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 +G+KR++S+ LV +KS +K ++G ++ +L + +S P L Sbjct: 138 QGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTVVGGLTV 197 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K R Sbjct: 198 KMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIKQKQREM 257 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K++++A H + Sbjct: 258 AMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVAKTHGVV 317 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 318 TVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|153836170|ref|ZP_01988837.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ3810] gi|149750445|gb|EDM61190.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ3810] Length = 351 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTEQPTAKKLRDARKKGQVAKSQEI-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP K Sbjct: 63 LAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + + Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPAVT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++I+ + + D + KLKMSK E+K E K+ G+P IK++++ Sbjct: 181 GVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + E R+ +++TNPTH A+ L Y + E P++ + +AK+M IA Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPIITLMETDAMAKRMIAIAR 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +P+ ++ LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVL 338 >gi|262167479|ref|ZP_06035185.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27] gi|262024051|gb|EEY42746.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27] Length = 359 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + I S + + LD N Sbjct: 106 PKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQN 165 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 166 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 221 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 222 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 281 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 282 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334 >gi|157147128|ref|YP_001454447.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC BAA-895] gi|157084333|gb|ABV14011.1| hypothetical protein CKO_02905 [Citrobacter koseri ATCC BAA-895] Length = 377 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 167/342 (48%), Gaps = 11/342 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +K+E P+ K+ A +G+ P S++ ++ + +LA L F P + + + Sbjct: 6 DKSEKPTPGKLRKAREKGDLPRSKDLTMAAGLLASFFTLAAFL-PYYQQLIRESFAAVGE 64 Query: 69 ATQRKLEDISHIVFLLTH----LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 R + + F+L + L A+ + IP + G + + +K Sbjct: 65 MAGRLDDPTALNQFMLLNVWVVLRFIATLIPIPLCCIVASLVPGGW------IFTPTKLK 118 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P FK++S GIKR++S ++ K +K ++ T++ + + ++ +L Sbjct: 119 PDFKKLSPISGIKRMFSASHYTEVGKMLLKCGIILTVLYMMVHDSMHALLHLQQLYLRQA 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + F R V + I +LD+ S + K++M+KQE+K+E K + GNP IK Sbjct: 179 IGQGFAIFRHVFSYFIAVIVIFALLDVPLSKFMFTKKMRMTKQEVKEEYKNNDGNPQIKG 238 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + + R ++ A +IITNPTHYA+AL+Y +AP +VAKG + +A +R Sbjct: 239 RIRQLQRQMAMGQIARTVPTADVIITNPTHYAVALKYDPQRAEAPYIVAKGIDDVALWIR 298 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++ HNI + E P LAR+++ +N IP ++A+A ++ Sbjct: 299 EVGANHNIEVVEFPPLARAVYYTTRVNQQIPTQLFRAIAHVL 340 >gi|327484648|gb|AEA79055.1| Flagellar biosynthesis protein FlhB [Vibrio cholerae LMA3894-4] Length = 359 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + I S + + LD N Sbjct: 106 PKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQN 165 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 166 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 221 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 222 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 281 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 282 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334 >gi|218703503|ref|YP_002411022.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026] gi|293403334|ref|ZP_06647425.1| predicted protein [Escherichia coli FVEC1412] gi|298378945|ref|ZP_06988826.1| type III secretion protein SctU [Escherichia coli FVEC1302] gi|300898063|ref|ZP_07116432.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] gi|218430600|emb|CAR11466.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia coli UMN026] gi|291429187|gb|EFF02207.1| predicted protein [Escherichia coli FVEC1412] gi|298280058|gb|EFI21562.1| type III secretion protein SctU [Escherichia coli FVEC1302] gi|300358241|gb|EFJ74111.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] Length = 379 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q + I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI+R++S +L K VK +V ++ +SL N Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + L + A P + + + +V + +++ +F A +LD+ + + LKM+ Sbjct: 166 FAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|323496542|ref|ZP_08101596.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326] gi|323318386|gb|EGA71343.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326] Length = 376 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/357 (26%), Positives = 189/357 (52%), Gaps = 10/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE + ++++ A +G S+E + S ++ + L++F ++ + Sbjct: 1 MAESDGQE-RTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVSLMWFGESLARALFT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + + + L L+ L++ + LF+ G+ + I ++ Sbjct: 60 VMERLFTLSREEIFDQVKLFDLALGSLTSLILPLILILVTLFIAAVAGAAGVGGIS-FSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM-LDF 176 P + +++ G+KR+ + + V +KS +K+ LV + + + E+ F + +D Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 N ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE K++ Sbjct: 179 FPQN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKET 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG Sbjct: 235 EGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNSDRAPIVVAKGT 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 295 DHMALKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351 >gi|217077044|ref|YP_002334760.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B] gi|217036897|gb|ACJ75419.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B] Length = 312 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 163/273 (59%), Gaps = 10/273 (3%) Query: 88 SLSASRLVIPGLLLF----MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 ++ A + VI L++F M+ GI + +Q ++ +K F +++ G+KR++S+ Sbjct: 40 TIEAFKGVIIDLIIFVGLVMITGIITGSLQTKFLITFKSIKLDFSKINPISGLKRMFSLR 99 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTML---DFISANPHSILYHAFFTVRKVLIMIL 200 +L +KS +K+++VG + + + N+ +L D + +++ F ++LI Sbjct: 100 SLFELLKSILKLVIVGYVGYLVVKSNWNKLLLATDTSVSEGALLIWDITF---ELLIKCG 156 Query: 201 LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260 + + +++ D +S +++ ++M+KQE+K+E K+ GNP IK +Q+ I H+MM+ Sbjct: 157 IALFIVSIADYFFSRYEYEKNIRMTKQEVKEEFKEVEGNPEIKRKQRQIMMQYSMHRMMQ 216 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 AT+++TNPTH+A+A++Y E D P++VAKG + +A+K+++IA ++N+PI P L Sbjct: 217 EVPEATVVVTNPTHFAVAIKYDSDEMDVPIVVAKGADKLAQKIKEIARKNNVPILRNPPL 276 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 AR L+ V I IP Y+AVA+++ +Y K Sbjct: 277 ARELYFSVEIGDEIPQKLYRAVAEVLAYVYTLK 309 >gi|298736474|ref|YP_003729000.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8] gi|298355664|emb|CBI66536.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8] Length = 358 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 177/357 (49%), Gaps = 41/357 (11%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFF---FSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E L + +++ I+ +++ FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 D + + + Q ++ FLL L +V LF + G ++ Sbjct: 62 LKDFSLDFSKESVQELFNQLAKDTFLLLLPILIILMVVA---FLFNVLQFGWLFAPKV-- 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++P F +++ G+K ++S+ L++ G++IT+ + +F Sbjct: 117 -----IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIF 160 Query: 178 SANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSK 226 S + + A ++ L+ L L +D+ Q+ + LKM+K Sbjct: 161 SLFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTK 220 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 221 QEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEH 279 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 280 PVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|255745141|ref|ZP_05419090.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101] gi|262153469|ref|ZP_06028599.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1] gi|255736971|gb|EET92367.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101] gi|262030706|gb|EEY49340.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1] Length = 330 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + I S + + LD N Sbjct: 77 PKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQN 136 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 137 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 192 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 193 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 252 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 253 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 305 >gi|315648120|ref|ZP_07901221.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] gi|315276766|gb|EFU40109.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] Length = 316 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 135/231 (58%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K F+++ +G K I+S+ +LV F+KS +K+ ++G ++ +L + + P Sbjct: 82 LKMKFEKLDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREGLSSLSTMGPD 141 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 +I + + I + + L VLD + + + ++MSKQ+IKDE K+ G+P+I Sbjct: 142 AIFHFVADITMSLGFKIAIGLIILAVLDYMYQRYDYEKNIRMSKQDIKDEYKKMEGDPLI 201 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + + R +MM+ A +IITNPTH+A+A++Y + +AP ++AKGQ+ +A + Sbjct: 202 KGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSMMEAPQIIAKGQDFMALR 261 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA EH I E LAR+L+++ I +IP ++AVA+++ +Y K Sbjct: 262 IKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 312 >gi|269967242|ref|ZP_06181306.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] gi|262284522|gb|ACY41059.1| VscU [Vibrio alginolyticus] gi|269828098|gb|EEZ82368.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] Length = 349 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 177/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTEQPTAKKLRDARQKGQVAKSQEI-VSSALILALIIVLFAFADYYMSHISALILLPSK 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D +V + ++ + L+ P +L+ + I S + Q + + VKP K Sbjct: 63 LAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + + Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPTIT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++I+ + + D + KLKMSK E+K E K+ G+P IK++++ Sbjct: 181 GVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M IA Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAIAK 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +P+ ++ LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVL 338 >gi|330828812|ref|YP_004391764.1| flagellar biosynthetic protein FlhB [Aeromonas veronii B565] gi|328803948|gb|AEB49147.1| Flagellar biosynthetic protein FlhB [Aeromonas veronii B565] Length = 376 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/358 (26%), Positives = 183/358 (51%), Gaps = 18/358 (5%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D +TE P+ K+++ A +G S+E +S+L ++ L + + + Sbjct: 3 DTDQERTEQPTGKRLQQAREKGQIARSKELGT-ASVLLSAVFGLLMLKGSLATAMIKVVT 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN--- 121 + + + + D + ++ ++ L LV+P LLF + I +++ + + +N Sbjct: 62 MGFTLDREQAFDPNAMIAMVPAL---LGELVLPLGLLFALVAIAAFIGNTL-MGGMNFST 117 Query: 122 -HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179 + P ++S G+KR++ + +L+ +KS K++ + L+ + +L+ + Sbjct: 118 EAMMPKMSKLSPLSGLKRMFGVQSLIELVKSIAKVVFITLFAWWMLSSQFNHLLNLSMEG 177 Query: 180 NPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQS 236 P I+ F + ++I+L A L ++ I + QW +LKM+KQE+KDE K S Sbjct: 178 FPGGIIDALELF----LWMLIILCCALLPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDS 233 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKG 295 G P +K + + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG Sbjct: 234 EGKPEVKGKIRQLQMQMAMRRMMGDVPKADVVITNPTHYSVALKYDAGKPGAAPKVVAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA K+R+IA E+ IPI P+L R+++ + IP + AVAQ++ ++ K Sbjct: 294 TDEIAMKIREIAREYEIPIMPSPALTRAIYHSTELGHEIPEGLFAAVAQVLAYVFQLK 351 >gi|331671779|ref|ZP_08372575.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] gi|331070768|gb|EGI42127.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] Length = 379 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q + I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI+R++S +L K VK +V ++ +SL N Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLMMLWVSLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + L + A P + + + +V + +++ +F A +LD+ + + LKM+ Sbjct: 166 FAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|266621912|ref|ZP_06114847.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] gi|288866385|gb|EFC98683.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] Length = 355 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 104/363 (28%), Positives = 178/363 (49%), Gaps = 25/363 (6%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF----FFSPGIY---SV 58 A D KTE + K+ +D +GN S + I C + +LF +P IY Sbjct: 4 AADEKTEKATPKRRQDERKKGNVFQSSDV-----IAVCSLLVLFNSLNALAPMIYRTLKA 58 Query: 59 TSDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + +L A++T+ ED+ + L A+ +P L + + + + Q Sbjct: 59 SMELFFSYAASTEPLTAEDLPDKLLKAMFLFGQAA---LPLLFIGVAVAVVTTFFQTRLS 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + +K R+SL +G KR++SI ++V +K+ +KI ++ +I + + Sbjct: 116 FSADVMKFKMDRISLLKGFKRMFSIRSVVELLKAMIKITILAWVIYSYIKGRIHEFARLM 175 Query: 178 SANPHSILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + T ++ + +F+A L W Y + L+MSKQEIKDE K Sbjct: 176 DGTVQAAFVYVGDTAVSLVNTVGAAFIFLAAFDYLYQWWEYEK---NLRMSKQEIKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 Q+ G+P IK R + R +MM+ +A +II NPTH+A+AL Y N APV++AK Sbjct: 233 QTEGDPQIKGRIREKQRQMASMRMMQNVPKADVIIRNPTHFAVALGYDSNTNRAPVVLAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYH 351 G + +A K+ ++ + + I E+ LAR L+ V ++ IP FY+ VA++ +YK+ Sbjct: 293 GADHLALKIVEVGEANGVYIMEDKPLARGLYASVEVDMEIPEEFYQTVAKVLAFVYKLKK 352 Query: 352 KKI 354 K I Sbjct: 353 KDI 355 >gi|327254528|gb|EGE66144.1| flhB HrpN YscU SpaS family protein [Escherichia coli STEC_7v] Length = 379 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 183/367 (49%), Gaps = 37/367 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F V Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62 Query: 64 VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110 + A + D+ H++ F+LT L + A+ L+ +PG LF+ Sbjct: 63 SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 + P F ++S +GI R++S +L K K ++V ++ ISL N+ Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNF 166 Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 L + A P + + + +V + +++ +F A ++D+ + + LKM+K Sbjct: 167 AAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A ++ Sbjct: 283 AAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342 Query: 347 YKIYHKK 353 + K Sbjct: 343 TYVLQMK 349 >gi|260431743|ref|ZP_05785714.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis ITI-1157] gi|260415571|gb|EEX08830.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis ITI-1157] Length = 361 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 183/362 (50%), Gaps = 31/362 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57 MS D +K+ + +K++ A +G S + S ++ I LL + G YS Sbjct: 1 MSGQDDDSDKSFEATPQKLQKAREKGEVVKSNDLSAVAAYAGLTIALL---AAGQYSAVH 57 Query: 58 VTSDLHVLL---ASATQRKLEDISH--IVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYL 111 + + L VL+ S + +E S ++ LL ++LSA L+ +P +++ + + L Sbjct: 58 LGTALMVLVDQSPSLSSLLVEGASTGPVLGLLKAVALSAGTLLAVPTVVVLL-----NLL 112 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 QR V + +KP R+S+ K + L F+KSFVK+++ + + L N Sbjct: 113 AQRAIVFAPSKLKPKPSRISIPSNAKNKFGRGGLFEFLKSFVKLVIYCACLALFLQANLS 172 Query: 172 TMLDFISANPH-------SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 +L +A P ++L+H F +++ I L I V+D W Y + K +M Sbjct: 173 QILSAAAAPPRASILLMMNLLFHFLF----IVVAITLAIG---VIDYLWQYSEHMRKNRM 225 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 S++E++DE K S G+P +K ++ A+ +MM +A ++I NPTHYA+ L++ +T Sbjct: 226 SRKELQDETKDSEGDPHVKQHRRQRAQEIATSQMMSDVPKADVVIVNPTHYAVVLKWDRT 285 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 APV VAKG + +A +R IA E +P+ +P AR+L V I IP +Y+ VA Sbjct: 286 PGTAPVCVAKGVDEVAATIRSIAIEAGVPLHSDPPTARALHATVEIGQEIPEDYYRPVAA 345 Query: 345 LI 346 I Sbjct: 346 AI 347 >gi|89056679|ref|YP_512130.1| flagellar biosynthesis protein FlhB [Jannaschia sp. CCS1] gi|88866228|gb|ABD57105.1| flagellar biosynthetic protein FlhB [Jannaschia sp. CCS1] Length = 362 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 28/361 (7%) Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS++D +P +K + KK+EDA +G I R L ++++ Y F S I + Sbjct: 1 MSDDDTSPGDKPFDATPKKLEDARKKGE--IVRSQDLNTAVM----YAGFLLSGAILAPW 54 Query: 60 SDLHVLLASATQRKLE--------------DISHIVFLLTHLSLSASRLVIPGLLLFMMF 105 L L TQ L D I L L SA+ +++P LL + Sbjct: 55 --LVQNLGQLTQTTLGQAEVIAPLMLGPGGDGPAIGLLSGSLIASAAIVLVPAGLLLI-- 110 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 S L QR + + + P R+S K+ Y L F KS VK+ LV + I Sbjct: 111 ---SLLAQRALLFTPSKLMPKLNRLSPISNAKQKYGSQGLFQFAKSAVKLALVSIFLAIY 167 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 L T+L + +L L+++ + ++D W + Q + +M+ Sbjct: 168 LWARAETILASLYGTAGQLLELLGRLSLDFLMVVAGMTGIIGIIDWFWEWSQLQLRNRMT 227 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 +QE+ DE K + G+P IK ++++ + ++M+ A +++ NPTHYA+AL++ + Sbjct: 228 RQEVMDESKSAEGDPHIKQQRRARGQGIAMNQMLGDVPNADVVVVNPTHYAVALKWDRAG 287 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 P+ VAKG + +A+++R+ A E +PIF +P AR+L + + +AI P Y+AVA Sbjct: 288 GGVPICVAKGVDDVARRIREAASEAAVPIFSDPPTARALHASIEVGAAIQPDQYRAVAAA 347 Query: 346 I 346 I Sbjct: 348 I 348 >gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 613 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 183/340 (53%), Gaps = 2/340 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + KK D+ +G S++ S+ ++ AC + + + + + L LA Sbjct: 265 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 324 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ F+ L L + + +P L M+ G+ + +IQ ++ +KPS Sbjct: 325 LPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 383 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G+K ++S +LV +K+ V + ++ + + NY +++ + S+ Sbjct: 384 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 443 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + + I L + + D + +LKM+KQEIKDE KQ+ G+P +K + K Sbjct: 444 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMRKI 306 R +MM++ S AT++ITNPTH A+AL+Y + N +AP +VAKG + +A +++ I Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++++PI E LAR ++ +V I+ IP Y+ VA+++ Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVL 603 >gi|167626135|ref|YP_001676429.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis HAW-EB4] gi|167356157|gb|ABZ78770.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis HAW-EB4] Length = 377 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/346 (24%), Positives = 179/346 (51%), Gaps = 1/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ +KTE + +K++ A +G P S++ + + I+ C + LL + I + + Sbjct: 1 MSNKDSGQSKTEKATPQKLKKAREQGQVPRSKDLASSALIIGCSL-LLTTTADWIAAKVA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S T+ +L++ + L + L ++ P L+ + + + + P+ N Sbjct: 60 AMTRINMSFTKAQLDEPGMMARHLAYSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N+ + R+ G+ R+ S+ +LV +KS +KI+L+ I+ + L +N+ ++ Sbjct: 120 NNANFKYSRIDPIAGLGRMASVKSLVELVKSILKIVLLIGIMLLFLQKNFQALMAVSQLP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + L + +T +D+ + Y + +L+MS QE+KDE KQ G P Sbjct: 180 IDEAVTRGIEMLSLAMFYMGLGLLVITFIDVPYQYWHHHKELRMSLQEVKDEYKQQDGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + + R + + +A +++ NP+HYA+AL+Y + DAP ++AKG + +A Sbjct: 240 EVKAKIRQMQQRISRSRADVSVPKADVLLVNPSHYAVALKYDMNKADAPYVLAKGTDELA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 MR IA +++ + E P L R+++ + IP + A+A ++ Sbjct: 300 LYMRDIAKRNDVEVLELPPLTRAIYYSTQVEQQIPSGLFIAIAHVL 345 >gi|300936100|ref|ZP_07151041.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] gi|300458749|gb|EFK22242.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] Length = 379 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 183/367 (49%), Gaps = 37/367 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F V Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62 Query: 64 VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110 + A + D+ H++ F+LT L + A+ L+ +PG LF+ Sbjct: 63 SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 + P F ++S +GI R++S +L K K ++V ++ ISL N+ Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNF 166 Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 L + A P + + + +V + +++ +F A ++D+ + + LKM+K Sbjct: 167 AAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A ++ Sbjct: 283 AAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342 Query: 347 YKIYHKK 353 + K Sbjct: 343 TYVLQMK 349 >gi|149188098|ref|ZP_01866393.1| flagellar biosynthesis protein B [Vibrio shilonii AK1] gi|148838086|gb|EDL55028.1| flagellar biosynthesis protein B [Vibrio shilonii AK1] Length = 376 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/362 (26%), Positives = 180/362 (49%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D + +TE + ++++ A +G S+E + S ++ + L+ F ++ Sbjct: 1 MAESDGQE-RTEDATPQRLKQAREKGQVARSKELASVSVLIVGALSLMMFGEGLARALFG 59 Query: 61 DLHVLLASATQR-----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + L + + KL D++ L L V+ L G+G Sbjct: 60 SMARLFNLSREEIYDSTKLFDVALGALSSLLLPLLLILFVLFIAALIGAAGVGGI----- 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYF 171 + P +++ G+KR+ + + V +KS +K+ LV ++ S + + Sbjct: 115 -SFSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVTLVAGMAFYLVNASRADLFQ 173 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 ++ N ++HA + +++I + + +DI + Q ++LKM+KQE+KD Sbjct: 174 LSMEVFPQN----IFHALDILLNFILLISATLLIVVAIDIPFQIWQHANQLKMTKQEVKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G P +K R + + R + +MM +A +IITNP H+++ALRY Q ++ APV+ Sbjct: 230 EFKDTEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIITNPEHFSVALRYKQGQDKAPVV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + +A K+R++A EH+I + P LARSL+ + IP + AVAQ++ +Y Sbjct: 290 VAKGIDHMALKIREVAREHSIYVIPSPPLARSLYHTTELEQEIPDGLFAAVAQILAYVYQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|261252335|ref|ZP_05944908.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891] gi|260935726|gb|EEX91715.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891] Length = 376 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 96/362 (26%), Positives = 185/362 (51%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57 M+E+D +TE + ++++ A +G S+E + S ++ I L++F + +++ Sbjct: 1 MAESDG-QERTEDATPRRLQQAREKGQVARSKELASVSVLVVGSIALMWFGESLARALFT 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V S L L + E H+ + S ++ L+L +F + Sbjct: 60 VMSRLFSL------SREEIFDHVKLFDIVVGSIGSLILPLLLILVTLFVAAVVGAAGVGG 113 Query: 118 --LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172 ++ P +++ G+KR+ + + V +KS +K+ LV + + + E+ F Sbjct: 114 VSFSVEAAMPKASKMNPLSGLKRMVGMQSWVELIKSILKVALVSGMAFYLISAAREDLFQ 173 Query: 173 M-LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + +D N ++HA + +++I + + +DI + Q +LKM+KQE+KD Sbjct: 174 LSMDVYPQN----IFHALDILLNFVLLISCTLLIVAAIDIPFQIWQHADQLKMTKQEVKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K++ G P +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++ Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDTDKAPIV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 VAKG + +A K+R++A EH+I + P LAR+L+ + IP + AVAQ++ ++ Sbjct: 290 VAKGTDHMALKIREVAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|224826341|ref|ZP_03699443.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002] gi|224601442|gb|EEG07623.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002] Length = 388 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 180/366 (49%), Gaps = 32/366 (8%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TEA + ++++ A EGN P SRE S F+ + + LL + + L Sbjct: 3 EDSDLERTEAATGRRLQQAREEGNIPRSRELSTFAVTMTG-VALLMAMGERLGNFMLQL- 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM--FGIGSYLIQRIPVL--- 118 R+L H + T L + + LL +M FG + + P+L Sbjct: 61 -------MRRLFTFDHDMVQHTDPVLLRFKESLTDTLLQLMPLFGGLALVAVAAPLLVGG 113 Query: 119 ---NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 ++P +++ GI+R++S++ L +K+ +K +++G + T + ++ Sbjct: 114 WNLTFKGIEPKLSKLNPAHGIQRMFSLSALTEALKAILKSVVIGGVATWVIWNERAELIG 173 Query: 176 FISANPHSIL-------YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 I+ + L +H F V ++++++ + W+YH+ +L+M+K+E Sbjct: 174 LIAMPLETALGKMMQLTFHTFLLVVGAMLLLVVVDVPFQI----WNYHK---QLRMTKEE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +K E K+ G+P +K R + + R + +MM+ A +I+TNPTHYA+AL+Y + A Sbjct: 227 VKQEYKEQEGSPEVKGRIRQLQRQAAQRRMMQEIPSANVIVTNPTHYAVALKYTEGMR-A 285 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P ++AKG+ +A+K+ EH + + PS AR+L+ + +P Y A AQ++ Sbjct: 286 PQVIAKGRLKLAEKIIDTGREHRVTVMRVPSFARALYFHSELGEEVPSRLYGAAAQILAY 345 Query: 349 IYHKKI 354 +Y K+ Sbjct: 346 VYQLKL 351 >gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] Length = 610 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 183/340 (53%), Gaps = 2/340 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + KK D+ +G S++ S+ ++ AC + + + + + L LA Sbjct: 262 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 321 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ F+ L L + + +P L M+ G+ + +IQ ++ +KPS Sbjct: 322 FPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 380 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G+K ++S +LV +K+ V + ++ + + NY +++ + S+ Sbjct: 381 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 440 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + + I L + + D + +LKM+KQEIKDE KQ+ G+P +K + K Sbjct: 441 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 500 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMRKI 306 R +MM++ S AT++ITNPTH A+AL+Y + N +AP +VAKG + +A +++ I Sbjct: 501 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 560 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++++PI E LAR ++ +V I+ IP Y+ VA+++ Sbjct: 561 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVL 600 >gi|288573010|ref|ZP_06391367.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568751|gb|EFC90308.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio peptidovorans DSM 11002] Length = 364 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/350 (28%), Positives = 180/350 (51%), Gaps = 14/350 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS---PGIYSVTSDLHV 64 + KTE + +K EG S++ + I+A LI ++ F I S + Sbjct: 15 EEKTEPATPRKRRKEREEGRVAKSQDLGASAVIIAGLIAVILFGGWIFDVILSFIRECLF 74 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + T + + LT S+SA L ++P ++ + + Q V+ + Sbjct: 75 FIGDGTLGR----TGWFHSLTMRSISAYGLAIVPMVVGCFLAAFFVSVAQVGFVMTSKPL 130 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P R + G+K++ S+ +LV +K +K +++ ++ +L + + D + A + Sbjct: 131 IPKMNRFNPISGLKKVISLRSLVEMVKGILKALILAIVLYSALRGD---LADMVMAVRYP 187 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDI-GWSYHQWY--SKLKMSKQEIKDEIKQSYGNP 240 I + ++ ++ + L V+ I WSY +W +KMSKQEIK+E KQ G+P Sbjct: 188 IGPAVSLLLWRIWLLCVKMTFLLLVIAIFDWSYQKWEFEKNIKMSKQEIKEEYKQMEGDP 247 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R + +MM +A ++ITNPT A+AL+Y + + DAPV++AKG+ L+A Sbjct: 248 QIKQKIRQKQREMAKQRMMADVPQADVVITNPTTLAIALQYDREKMDAPVVLAKGKGLLA 307 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++R+IA E+++P+ E LA +L V + +IP YK+VA+++ +Y Sbjct: 308 RRIREIAEENDVPVVENKPLAWALHDSVEVGESIPETLYKSVAEVLAFVY 357 >gi|261837998|gb|ACX97764.1| flagellar biosynthesis and export protein [Helicobacter pylori 51] Length = 358 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 105/356 (29%), Positives = 177/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-------SPGIYSV 58 A + KTE PS+KKI+ A EGN P S E +LA LI + FF S V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L + ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILTILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|289663762|ref|ZP_06485343.1| type III secretion system protein HrcU [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668184|ref|ZP_06489259.1| type III secretion system protein HrcU [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 357 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/345 (27%), Positives = 168/345 (48%), Gaps = 21/345 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK++DA +G+ PIS + + + +L ++ + S + + + + + + Sbjct: 3 DEKTEKPTEKKLQDARRDGDIPISPDVTAAAVLLGAMLVMKLAGSYFVEHMRALMQIGM- 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-------NL 120 D + T ++ + R+ I GLLL + F + L I V +L Sbjct: 62 --------DFTENTRDATAMNRALGRIGIEGLLLMLPFLVACLLGGLIGVFLQTGMNASL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F ++ G+K+++S+ + +N +K VK IL+G ++ + + ++ Sbjct: 114 KPVTPKFDSLNPVNGVKKLFSLRSFINLLKLVVKAILIGVVLWLGIRALMPMIIGLAYEP 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238 I A+ T+ + + +L + D WS W +MSK E K E K+S G Sbjct: 174 TPDIAQIAWRTLGTLCALAVLVFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREHKESEG 231 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K ++K A+ I E S+A +++ NPTHYA+AL Y P +VAKG + Sbjct: 232 DPEVKGKRKEFAKELIFGDPRERVSKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDD 291 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 A ++R A+ IPI P LAR+L+ V + A+P ++ VA Sbjct: 292 GALELRAFAHNQGIPIVANPPLARALY-VVELGDAVPESLFETVA 335 >gi|261209856|ref|ZP_05924157.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341] gi|262404466|ref|ZP_06081021.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586] gi|260841042|gb|EEX67567.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341] gi|262349498|gb|EEY98636.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586] Length = 330 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180 P +++ G KR++ + + V +KS +K++LV + I S + + LD N Sbjct: 77 PKLSKMNPLSGFKRMFGMQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQN 136 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P Sbjct: 137 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKP 192 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 193 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 252 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 253 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 305 >gi|188997532|ref|YP_001931783.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp. YO3AOP1] gi|188932599|gb|ACD67229.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp. YO3AOP1] Length = 350 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 103/357 (28%), Positives = 187/357 (52%), Gaps = 29/357 (8%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF------FSPGIYSVTSDLH 63 KTE + K+ + A EG S + S+ +S+ I L+F+ + G + T Sbjct: 7 KTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLLGYFKYTFSNP 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L S R +F+ L + A ++ L+LF++ I S ++Q + L + Sbjct: 67 LYLISENGR--------MFIWFTLKILAILILPVILILFVV-AIASNVMQFGFLFTLKPL 117 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT----MLDFISA 179 P ++++ GIKRI+S+ L +K+ K+ T++L +YF + DF+ Sbjct: 118 TPKLDKLNVISGIKRIFSLTVLFELIKNLAKL-------TVALFLSYFLVKYLLNDFLVY 170 Query: 180 NPHSILYHAFFTVRKVLIMILLFI---ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 SI + + ++I+++ F + + D + +++ LKM+K E+K+E K Sbjct: 171 MTGSINNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSY 230 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GN ++K + R +M+ +A ++ITNP HYA+AL+Y + + AP ++AKGQ Sbjct: 231 EGNLLVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVLAKGQ 290 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +LIA+K++++A EH++ I E+P LAR+L+ I IP Y+AVA+++ +IY K Sbjct: 291 DLIAQKIKEVAKEHDVKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKFK 347 >gi|239907023|ref|YP_002953764.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1] gi|239796889|dbj|BAH75878.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1] Length = 357 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 183/352 (51%), Gaps = 21/352 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + K+ A +G+ P S+E + ++A L + F ++ L + + Sbjct: 6 SKTEKATPKRESKAREKGSVPRSQELPKLTVLMAGLFTVRFTLG----NINEQLQEVFRT 61 Query: 69 ATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +L+ D++ +++ SLSA +L I L L ++ + +++ QR+ V + Sbjct: 62 FLGGRLDFTATTDDVAALMW-----SLSA-KLAIMLLPLLLVMAVVAFVTQRLQVGEVWR 115 Query: 123 VK---PSFKR-VSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 K P F V+ G++R+ S LVN K + + + L + + L Sbjct: 116 PKIFEPDFSNIVNPMRGLQRLLISAQTLVNLAKQTAMAFAISLVPYLILRKRFNEFLPLF 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + +I +++ LL + + +LD+ ++ + LKM+K E+KDE KQS+ Sbjct: 176 YQSVDNIALFLLDNGFDMVLYTLLPMFVIAILDVWYTRWDYAENLKMTKDEVKDEHKQSF 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K +QK ++ +M++ +A ++ITNPTH A ALRY E+ AP+L+AKG + Sbjct: 236 GDPHVKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHIACALRYNPLESPAPMLLAKGAD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +A+K++ IA EH +PI E LA++L+K V I IP Y+AVA ++ ++ Sbjct: 296 FMAEKIKDIAKEHKVPIRENKPLAQALYKNVEIGQVIPEDLYQAVASILAQL 347 >gi|313620092|gb|EFR91598.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378] Length = 260 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 140/248 (56%) Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ + I L+ Sbjct: 2 MVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLL 61 Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 + I ++ T++ + N L F + + + L IA + +LD + + + Sbjct: 62 SYVAYIGFRDHLDTLISYTGQNWLYSLSQIFALFKNEFLALFLVIAVIGLLDFFYQRYDY 121 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ Sbjct: 122 KKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVV 181 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 +RY +T++ AP L+ KG++ +A +R++A +P+ LARS++ + I Sbjct: 182 MRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDL 241 Query: 339 YKAVAQLI 346 YK V +++ Sbjct: 242 YKDVIEVM 249 >gi|323181524|gb|EFZ66944.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1357] Length = 379 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q E I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI+R++S +L K VK ++V ++ +SL N Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + L + A P + + + V + +++ +F A ++D+ + + LKM+ Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y + Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|306813328|ref|ZP_07447521.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] gi|305854091|gb|EFM54530.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] Length = 379 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 103/369 (27%), Positives = 185/369 (50%), Gaps = 41/369 (11%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI--------YLLF----FF 51 + + + KTE PS++K+ A EG P S++ L +S+ A + Y F F Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62 Query: 52 SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIG 108 S Y+ + ++ + L + F+LT L + A+ L+ +PG LF+ Sbjct: 63 SVHQYAQEINNPQVIGQFLRHHLLILGK--FILTLLPMPAAALLSSLVPGGWLFLP---- 116 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 + P F ++S +GI R++S +L K VK ++V ++ +SL Sbjct: 117 ------------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRN 164 Query: 169 NYFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 N+ L + A P + + + +V + +++ +F A ++D+ + + LKM Sbjct: 165 NFAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKM 220 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 221 TKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQS 280 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A Sbjct: 281 RAAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAH 340 Query: 345 LIYKIYHKK 353 ++ + K Sbjct: 341 VLTYVLQMK 349 >gi|254228241|ref|ZP_04921670.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25] gi|262394130|ref|YP_003285984.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25] gi|151939314|gb|EDN58143.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25] gi|262337724|gb|ACY51519.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25] Length = 351 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 177/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTEQPTAKKLRDARQKGQVAKSQEI-VSSALILALIIVLFAFADYYMSHISALILLPSK 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +D +V + ++ + L+ P +L+ + I S + Q + + VKP K Sbjct: 63 LAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + + Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWLTLRGNINALMQIPTCGLECVPTIT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++I+ + + D + KLKMSK E+K E K+ G+P IK++++ Sbjct: 181 GVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M IA Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMIAIAK 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +P+ ++ LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVL 338 >gi|258626191|ref|ZP_05721039.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603] gi|258581546|gb|EEW06447.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603] Length = 255 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180 P +++ G KR++ + + V +KS +K++LV + I S + + LD N Sbjct: 2 PKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQN 61 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P Sbjct: 62 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKP 117 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 118 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 177 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 178 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 230 >gi|229160731|ref|ZP_04288723.1| Flagellar biosynthetic protein [Bacillus cereus R309803] gi|228622746|gb|EEK79580.1| Flagellar biosynthetic protein [Bacillus cereus R309803] Length = 348 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 102/344 (29%), Positives = 181/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMLENRPLARSLYYQVEEDEAIPEDLYVAVIEVM 337 >gi|308062091|gb|ADO03979.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Cuz20] Length = 358 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 181/355 (50%), Gaps = 37/355 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE PS+KKI+ A EGN P S E F +LA LI + FF I+ V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLISIFVFF---IWWVDG----- 53 Query: 66 LASATQRKLEDIS------HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + ++D S + L L+ L++P L++ ++ S ++Q + Sbjct: 54 FSEMYRHAVKDFSLDFSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFA 113 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 114 PKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSL 162 Query: 180 NPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + + A ++ L+ L L +D+ Q+ + LKM+KQE Sbjct: 163 FLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFILAFIDLMIKRRQYTNSLKMTKQE 222 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 223 VKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPV 281 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 282 PVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|260853445|ref|YP_003227336.1| putative lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|257752094|dbj|BAI23596.1| predicted lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|323158016|gb|EFZ44117.1| flhB HrpN YscU SpaS family protein [Escherichia coli EPECa14] Length = 379 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 183/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q E I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI+R++S +L K VK ++V ++ +SL N Sbjct: 117 -----------KKILPDFSKISPLKGIERLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + + L + A P + + + V + +++ +F A ++D+ + + LKM+ Sbjct: 166 FASFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y + Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|83647785|ref|YP_436220.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC 2396] gi|83635828|gb|ABC31795.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC 2396] Length = 351 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 177/351 (50%), Gaps = 27/351 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLL 66 D KTE P+ KK+ DA +G S++ + S+ C ++LL + Y S S L L Sbjct: 3 DEKTEKPTPKKLRDARKKGQVAHSKD--VVSTATICAMFLLLLATSDTYLSHLSILIELP 60 Query: 67 ASATQRKLED-----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 A R + + ++++ L +L+L +V+ +L +G+ + + Sbjct: 61 AQYMDRPFLEALPMVVDNVIYELIYLTLMPVGVVMASAILANFLQVGA-------LFAVE 113 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +KP K+++ EG K+I+ + N + F+KS +K+ ++ ++ + + +N SA Sbjct: 114 SLKPDLKKLNPVEGFKKIFCVKNFIEFIKSLIKVGVLSYLVYMLIKDNLND-----SARL 168 Query: 182 HSILYHAF----FTVRKVLIM--ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 H T+ K LI+ + FIA L D Q+ + KMSK E+K E KQ Sbjct: 169 HYCEVECIPDFVGTLLKQLILYSAITFIA-LAAADFFIQKQQFIKQQKMSKDEVKREYKQ 227 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P IK ++K I R + + + + I+TNPTH A+ + Y + D P ++ KG Sbjct: 228 MEGSPEIKGKRKQIHREMMNTSIPAQVKKCSAIVTNPTHLAVGIYYEKGVEDVPKVMVKG 287 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +AK +RKIA E IP+ E LAR L+K+ +N +PP ++AVA ++ Sbjct: 288 ADQMAKVIRKIAEEEGIPMMENVPLARGLWKRAQVNDYVPPDLFEAVAAVL 338 >gi|317153078|ref|YP_004121126.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2] gi|316943329|gb|ADU62380.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2] Length = 353 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 183/354 (51%), Gaps = 25/354 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGI----YSVTS 60 +KTE ++K+ + NEGN P S E + L +L + F+ I ++ Sbjct: 6 SKTEKATTKRRKRTRNEGNVPKSSELTKAIVLLMGVLTLRSLIGFYQDQFIEIYEWTFRE 65 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +H L +T ++ +F+ +L I L L + ++L R+ V L Sbjct: 66 GIHTKLDPST-------TYALFVW-----GVKKLAIIVLPLLFVLAFTAWLTLRLQVGGL 113 Query: 121 ---NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +KP F ++ ++ G+KR+ S V +S ++ + VG I + + +L Sbjct: 114 WTTKPMKPKFAKMFNIVAGLKRLLISPQAFVRLGRSILQALAVGIAPYIVIKQELPNLLP 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 A+ H I+ + K+ L+ + + + D+ +S ++ +KM+K EIKDE +Q Sbjct: 174 LFHASTHGIIAYILGVGYKMACYALVPMLLIAIADLWYSRWKYEEGIKMTKDEIKDERRQ 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P IK +Q+ + +M + +A ++ITNPTH+A+AL+Y AP+++AKG Sbjct: 234 AEGDPHIKRKQQQKMLQMMASRMFKDIPKADVVITNPTHFAVALQYDALVAPAPLVLAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 N +A++++++A E++IPI P LAR+L+KQV I IP ++AVA ++ K+ Sbjct: 294 VNRVAERIKEVARENSIPIEVNPPLARALYKQVEIGETIPEEMFQAVAAILAKL 347 >gi|157959922|ref|YP_001499956.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC 700345] gi|157844922|gb|ABV85421.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC 700345] Length = 376 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 25/354 (7%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-IYSVTSDLH 63 D +KTE + KK++ A +G P S++ + + ++ C LL S G I + + L Sbjct: 4 DTGQSKTEDATPKKLKQAREQGQVPRSKDFTSAALVMGC--ALLLTTSAGEIGARVAQLA 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP---VLNL 120 T+ +L++ + L L ++ P LF++ + + + +P + N Sbjct: 62 RTNMQFTKAQLDEPGMMTRHLGQALLEILYILAP---LFILVALIAMIAGAMPGGWIFNF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF---- 176 + + R+ G+ R+ SI +L +KS +KI+L+G I+ + L +N T+L F Sbjct: 119 GNAGFKYSRIDPIAGLGRMVSIKSLAELIKSVLKIVLLGGIMLVFLDKNLQTLLTFSQLP 178 Query: 177 ----ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 I+ + F+ L + LLFIA +D+ + Y Q +++LKMS QE+KDE Sbjct: 179 IDEAITRVIDMLSLGVFY-----LGLGLLFIA---CIDLPYQYWQHHNELKMSLQEVKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 KQ G P IK + + + + R + + A +++ NPTHYA+AL+Y + DAP ++ Sbjct: 231 HKQQEGKPEIKAKIRQMQQRISRSRADVSIPNADVLLVNPTHYAVALKYDANKADAPYVL 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG + +A MR++A H + I E P L R+++ I IP + A+A ++ Sbjct: 291 TKGTDELALYMREVAKRHGVEILELPPLTRAIYYSTNIEQQIPASLFVAIAHVL 344 >gi|83646009|ref|YP_434444.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC 2396] gi|83634052|gb|ABC30019.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC 2396] Length = 345 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/350 (28%), Positives = 181/350 (51%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL-- 66 KTE P+ KK+ DA +G S+E L S+ + +Y L F S YS+ L L+ Sbjct: 3 EKTEKPTPKKLLDARKKGQVAHSKE--LVSTAMMIAMYGLLFASG--YSLVEALQSLIDL 58 Query: 67 -----ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L+ + + VF SL +++P +LL ++ + S + P+ + Sbjct: 59 PARFYGQPFGEALQAVLNGVF---EKSLD---ILLPFILLVIVTAVVSNVGHVGPLFAME 112 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 VK K++ EG+K+++S+ +L+ +KS VKI+ + +I +T N L+ I P Sbjct: 113 SVKFDLKKIDPVEGVKKLFSVRSLMELLKSIVKILFLSILIYWVITAN----LNDIRKLP 168 Query: 182 HS-----ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 H + + ++ ++ ++ F+ + VLD + H+ +L+M+K E+K E K + Sbjct: 169 HCGSDCIMPFIGHLMLQLAMVSMVAFV-IVAVLDFLYQKHEHQKQLRMTKDEVKREYKDA 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP + ++K I R + M+ +A++I+TNPTH A+ + Y + P ++ K + Sbjct: 228 EGNPEVIGQRKQIHREMLDGGMISQIKKASVIVTNPTHIAIGIYYDGDKRSLPTVILKAK 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 N A++++KIA + +PI E LAR+L+ Q + + IP + VA+++ Sbjct: 288 NTTAQRVKKIAAKEGVPIMENIPLARALYAQAELENYIPSELIEPVAEVL 337 >gi|37525818|ref|NP_929162.1| flagellar biosynthesis protein FlhB [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785247|emb|CAE14188.1| Flagellar biosynthetic protein FlhB [Photorhabdus luminescens subsp. laumondii TTO1] Length = 383 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 105/353 (29%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE P+ K E A EG SRE SSIL L + G S+T +L Sbjct: 3 EDSDLEKTEEPTPHKREKARKEGQIVRSRE---LSSILMLTSGLSLLWMSG-QSMTHELS 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +++ + + +V + L A ++P ++ + + + V + Sbjct: 59 LMVFEGFSFDHSMVSNDKQMVQQIGRLLQQAVLALLPVFAGLVLVALSAPALLGGLVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+++ G+KRI+S+N L K+ +K VG + L N+ ML I+ Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPAMLRLIAQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A + +++ + + D+ + + KL+M++QEIKDE K+ G+P Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG +IA Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALKYDEKAMSAPKILAKGAGIIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++I E+ IP+ E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIKEIGTENRIPLLEVPPLARALYRHGEIGGQIPATLYAAVAEVLAWVYQLK 351 >gi|156976193|ref|YP_001447099.1| flagellar biosynthesis pathway, component FlhB [Vibrio harveyi ATCC BAA-1116] gi|156527787|gb|ABU72872.1| hypothetical protein VIBHAR_04964 [Vibrio harveyi ATCC BAA-1116] Length = 375 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 186/360 (51%), Gaps = 30/360 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58 MSE + D KTE S +K++ A EG P ++E F++ + L +FF+S I+ Sbjct: 1 MSEQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVAMFFYSQLNSIWES 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRI 115 S + + T+ LE+ +V HL S + +++P + ++ GS ++ Sbjct: 57 MSGVFRYNMTLTKADLENPKQLV---EHLGQSLAVIIEMLLPLFTVIIIVAFGSSMVLGG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + +V P +++ GIKRI+S ++V +KS VK++++ I+ L +N+ L Sbjct: 114 WMFRPANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYL-DNHLQPLL 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226 + P L F LIM +LF + VLDI + + +L+M+K Sbjct: 173 GMQNLP---LSQGF-----SLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTK 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K + G P +K R + I + R K+ + A ++ITNPTHYA+AL+Y + + Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEHSLS 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 DAP +VAKG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344 >gi|114799674|ref|YP_759006.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC 15444] gi|114739848|gb|ABI77973.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC 15444] Length = 357 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/360 (27%), Positives = 173/360 (48%), Gaps = 51/360 (14%) Query: 1 MSENDAPDNKTE-APSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E D + E S +++ DA +G+ P S+EA+ F+ IL LI L Sbjct: 1 MAEQDQDSGEKEFDASEQRLRDARKDGDVPQSKEANAFALILGILIAAL----------- 49 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY--------- 110 +L A + +D S I++ + +A G + Sbjct: 50 ----ILDAVVGPKLFDDFSRILYHGD--AFAADIFEGDGGATWAWIATTLLALSPLLLVM 103 Query: 111 --------LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VG 159 +IQ+ + + P K+++ + IK Y L +F+K VK++ +G Sbjct: 104 AALVLVALIIQQSIAFSAKKIMPDMKKINPVDNIKNKYGTKGLTDFLKDTVKMLFAAGLG 163 Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA---TLTVLDI--GWS 214 T+ I T +Y+ +A+ Y FT + L +IL F A L LD+ W Sbjct: 164 TLFLIQFTRDYYGSSSVDTAD----FYQ--FTFNQTLRLILYFFAFQFVLAALDLPLQWR 217 Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274 H KL+M+++++K E+KQS G+P ++ +++ A R +M++ AT+++ NPTH Sbjct: 218 IHS--HKLRMTREDMKKEMKQSEGDPHMRQQRREKATKISRGQMLQNVKSATVVMVNPTH 275 Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 YA+AL++ APV VAKG + +A K+R++A E+N+PI+ +P RS++ V ++ I Sbjct: 276 YAVALKWDPDSKLAPVCVAKGTDHLAMKIRELAIENNVPIYSDPPATRSIYSMVEVDQEI 335 >gi|256020206|ref|ZP_05434071.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] gi|260866391|ref|YP_003232793.1| putative lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] gi|300817293|ref|ZP_07097511.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|307315219|ref|ZP_07594798.1| type III secretion exporter [Escherichia coli W] gi|331666524|ref|ZP_08367398.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|332281368|ref|ZP_08393781.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|257762747|dbj|BAI34242.1| predicted lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] gi|300530269|gb|EFK51331.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|306905400|gb|EFN35937.1| type III secretion exporter [Escherichia coli W] gi|315059466|gb|ADT73793.1| Lateral flagellar export/assembly protein [Escherichia coli W] gi|323178517|gb|EFZ64095.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1180] gi|323379976|gb|ADX52244.1| type III secretion exporter [Escherichia coli KO11] gi|331065748|gb|EGI37632.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|332103720|gb|EGJ07066.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 379 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q E I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI R++S +L K VK ++V ++ +SL N Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + + L + A P + + + V + +++ +F A ++D+ + + LKM+ Sbjct: 166 FASFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y + Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|59889759|emb|CAH19114.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia coli] gi|284920023|emb|CBG33079.1| lateral flagellar export/assembly protein (FlhB-like) [Escherichia coli 042] Length = 379 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q + I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI+R++S +L K VK +V ++ +SL N Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + L + A P + + + +V + +++ +F A +LD+ + + LKM+ Sbjct: 166 FAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQ++K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ Sbjct: 222 KQKLKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|213420820|ref|ZP_03353886.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 221 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 117/197 (59%) Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216 LVG + L ++ M+ ++ +P + +A V ++++L + + D+ + Sbjct: 3 LVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIF 62 Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276 KL+MS+Q+I+DE K+S G+P +K + + + R+ + +MME +A +I+TNPTHY+ Sbjct: 63 SHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYS 122 Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL+Y + + AP +VAKG LIA ++R+I EH +P E P LAR+L++ I IP Sbjct: 123 VALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPG 182 Query: 337 VFYKAVAQLIYKIYHKK 353 Y AVA+++ ++ K Sbjct: 183 QLYAAVAEVLAWVWQLK 199 >gi|331005442|ref|ZP_08328821.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] gi|330420718|gb|EGG95005.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] Length = 361 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 189/347 (54%), Gaps = 5/347 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 MSE + + +TE P+ K+++A + G S E SLF+ L+ +++L + I + Sbjct: 1 MSEEQSQE-RTEKPTPFKLKEARDRGQVSKSTELNSLFA--LSSVLFLSYLVGEQIVNSQ 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L + + S + L + + P + L + I S L+Q P+L+ Sbjct: 58 LLLSKKLLTYDFHTIGSTSGALLLFEQIKDGLINIYWPLIFLIIFISIVSNLVQTGPILS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP +R++ +G K+I+S + F+K+ +K+IL T+ I++ E +L+ I Sbjct: 118 FFPLKPDTQRLNPIKGFKKIFSKRMIYEFIKTTIKLILFATVAYITIDELLIVLLNLIDI 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P S + + I +LL + ++D ++ ++ +++MS ++IKDE+K+ G+ Sbjct: 178 QPESYPLKLVTFAQSLGIKMLLVVLLAALVDFAYTRWEFIQQMQMSHKDIKDEVKKREGD 237 Query: 240 PIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 P+I+++++ + + + + K + A ++ITNPTH A+AL++ Q E +P + AKG Sbjct: 238 PLIRSKRRELQKEAVEKSKSLSNVPDADVLITNPTHLAIALKFNQQEMTSPHVTAKGSGE 297 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 +A++M+ +A +H + I E LARS++ + INSAI +Y+ +A++ Sbjct: 298 LAQQMKILARKHKVAIVENKPLARSMYNRTRINSAISEEWYQPIAKI 344 >gi|301646788|ref|ZP_07246642.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|307136835|ref|ZP_07496191.1| flagellar biosynthesis protein FlhB [Escherichia coli H736] gi|331640691|ref|ZP_08341838.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] gi|301075023|gb|EFK89829.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|315616850|gb|EFU97467.1| flhB HrpN YscU SpaS family protein [Escherichia coli 3431] gi|331040065|gb|EGI12273.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] Length = 379 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 181/368 (49%), Gaps = 39/368 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61 Query: 64 VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109 + + Q E I + F+LT L + A+ L+ +PG LF+ Sbjct: 62 ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 + P F ++S +GI R++S +L K VK ++V ++ +SL N Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165 Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + L + A P + + + V + +++ +F A ++D+ + + LKM+ Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+K+E K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y + Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP +VAKG + IA +R++A E+ + + E P LARS++ +N IP Y+A+A + Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341 Query: 346 IYKIYHKK 353 + + K Sbjct: 342 LTYVLQMK 349 >gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium beijerinckii NCIMB 8052] gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB 8052] Length = 613 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 192/361 (53%), Gaps = 40/361 (11%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK ++ N+G S++ S+ +++ C + + S L + Sbjct: 264 AGDDKTEEATPKKKSESRNKGQIARSKDVSVAITMVICTLLI------------SSLWGM 311 Query: 66 LASATQRKL---------EDISHIVFLLTHLSLSA----SRLVIPGLLLFMMFGIGSYLI 112 L + + L D +H +++L+++ ++P L M+ G+ + L+ Sbjct: 312 LTNGFKEVLIYFFNFPMIGDFNHAT--ISNLAITTVIKIGSYLLPFALPIMVGGVIASLL 369 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q ++ +KPSF +++ G+K + S ++V+ K+ V I +V I ++ NY + Sbjct: 370 QTGFIITAEPLKPSFGKLNPLSGLKNMISKRSIVDLSKNLVVITIVSIICYKYISGNYQS 429 Query: 173 MLDFISANPHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSY----HQWYSKLKMSK 226 +L S LY + V+ +++ I I + V+ G Y +++M+K Sbjct: 430 ILGI------SNLYLPSLSDEVKNLVVGIFKQICIVLVIIAGIDYFLQVRMHNKEMRMTK 483 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE KQS G+P IK + K R +MM++ + AT++ITNPTH A+A++Y + ++ Sbjct: 484 QEVKDEYKQSEGDPKIKGKIKQRQRELGMKRMMQSVADATVVITNPTHLAIAIKYEEGKD 543 Query: 287 -DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 +AP +VAKG + +A K++ IA E+ +P+ E LAR ++ +V ++ IP Y+AVA++ Sbjct: 544 MEAPKVVAKGADYVAFKIKSIAKENEVPVIENKPLARLMYDRVEVDQDIPQDLYQAVAEI 603 Query: 346 I 346 + Sbjct: 604 L 604 >gi|91224467|ref|ZP_01259729.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] gi|91190809|gb|EAS77076.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] Length = 349 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 177/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ LI +LF F+ S S L +L + Sbjct: 4 EKTEQPTAKKLRDARQKGQVAKSQEI-VSSALILALIIVLFAFADYYMSHISALILLPSK 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ +V + ++ + L+ P +L+ + I S + Q + + VKP K Sbjct: 63 LAYQGFQE--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + + Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPTIT 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++I+ + + D + KLKMSK E+K E K+ G+P IK++++ Sbjct: 181 GVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M IA Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAIAK 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E +P+ ++ LAR+L+ ++ IP +A A+++ Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVL 338 >gi|328948397|ref|YP_004365734.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM 2489] gi|328448721|gb|AEB14437.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM 2489] Length = 365 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 180/343 (52%), Gaps = 13/343 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-L 66 + KTE S +K+ A EG S+E + + + ++ +L +P Y ++ + Sbjct: 11 EGKTEEASEQKLRKARKEGRIAKSQELN-GTVVFLFVVAVLILLAPWFYKKICEMMIFYF 69 Query: 67 ASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNHVK 124 + T +K++D + +FL L + V+P L ++ G+ L+Q R + ++ Sbjct: 70 NNVTAQKIDDARFYYIFLRNLLPI-----VLPLSLAGILAGVIINLVQNRGFIFTTKTIE 124 Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P F ++ + G K ++S+ L N KS +K+ ++ + + + + L F+ A Sbjct: 125 PKFSKIVPKFGEYFKKTLFSMMGLFNIAKSVLKVAIIVAVAVLLIRLDLAKTLGFLKAGG 184 Query: 182 HSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L V ++L++ + + + V D ++ ++KM+KQE+K+E K+S G+P Sbjct: 185 IDLALRSVSGMVAQLLVVSAVILIVIGVFDYVMQRREFKEQMKMTKQEVKEEFKESEGDP 244 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S + + M +A + ++ITNPTHYA++L++ Q + DAP++ AKG + A Sbjct: 245 EVKGRLESAQKEMLSQNMPKAVRESDVVITNPTHYAVSLQWKQEQQDAPMITAKGTDNTA 304 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 + M+KIA E+++PI E LAR L+ + IP + +A+A Sbjct: 305 QTMKKIAAENDVPIIENRPLARGLYADTEVGDIIPTSYLRAIA 347 >gi|108563180|ref|YP_627496.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPAG1] gi|107836953|gb|ABF84822.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1] Length = 358 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 108/353 (30%), Positives = 182/353 (51%), Gaps = 33/353 (9%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62 A + KTE PS+KKI+ A EGN P S E +LA L+ + FF I+ V S++ Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF---IWWVDGFSEMY 58 Query: 63 -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 HVL + E + L L L++P L++ ++ S ++Q + Sbjct: 59 RHVLKDFSLDFSKESVQE---LFNQLVKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164 Query: 182 HSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 + + A ++ L+ L L +D+ Q+ + LKM+KQE+K Sbjct: 165 GELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVK 224 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQF-DEEHPVPV 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +VAKG + +A +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336 >gi|171058301|ref|YP_001790650.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6] gi|170775746|gb|ACB33885.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6] Length = 385 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 180/363 (49%), Gaps = 33/363 (9%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D+ +K P+ ++++ A +G SR+ + F+ ++A + L+ F +P S+T L Sbjct: 3 DSAQDKHLPPTERRLQKAREDGQVARSRDLAHFA-VVAAGLALVMFAAP---SLTQWLRD 58 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-------V 117 L+A+ + + ++ + LS +L+ P L L + G+ + L+ V Sbjct: 59 LMATGLRFDVRMVTSPQMMGERLS----QLMYPALALCLGLGVVTGLVAMAAAVVSGGWV 114 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT---------ISLTE 168 + P F +++ G+ RI S + + +K+ + +++ ++ +LT+ Sbjct: 115 WTFKPLMPDFSKLNPLTGLGRIVSKAQIGDMLKACLLALILASVGAAYLWAHLNDFALTQ 174 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + FI+A + L ++++ +A ++D+ ++LKMS Q+ Sbjct: 175 SMPLPAAFIAATDR---------ISTGLWLLMIVLAASAMVDVPLQRFMHRNRLKMSHQD 225 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +K+E KQ GN +K + K R R +M+ A A +++ NPTHYA+AL+Y A Sbjct: 226 MKEEFKQQEGNQEVKGKMKQRMREGSRRRMLAAVPEADLVVMNPTHYAVALKYDDASMGA 285 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P +VA G +L+A K+R +A E +P+ + P LAR+L+ ++ IP Y AVAQ++ Sbjct: 286 PRIVAMGADLLALKIRDVAKESKVPVLQSPPLARALYAHGELDREIPLALYSAVAQVLAH 345 Query: 349 IYH 351 ++ Sbjct: 346 VFQ 348 >gi|284041540|ref|YP_003391880.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684] gi|283945761|gb|ADB48505.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684] Length = 358 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/358 (27%), Positives = 177/358 (49%), Gaps = 28/358 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVT------- 59 D++TE + +K +DA G ++R + ++ L ++ L P + Sbjct: 3 DDRTERATPRKRDDARRRGQ--VARSMDVNGAVVLIAGLFALSLLGPAVVGAMETSMRDS 60 Query: 60 ----SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 SD L T LE I+ + L L+L+ + P + + GI + L Q Sbjct: 61 FERISDPQAAL---TAGGLEGIA--MSTLRTLALA----IGPVAAVCAIAGIVANLGQVG 111 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + +KP +R++ G + ++ KS VK+ ++G I+ +++ + Sbjct: 112 LKPSAEALKPQAQRINPLSGARNVFGPRMFFEGAKSIVKVAVIGVIVAMAVAPKMTELSA 171 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEI 233 + A+P + V + I IA L + I ++Y ++ +L+MS Q++KDE Sbjct: 172 TVGASPGQLAAELVSLV--LSISQRAAIAYLVIGAIDYAYQKYTHEKQLRMSMQDVKDEF 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 + +K+ Q+ + R +MM A A +++TNPTH+A+AL+Y T+ AP++VA Sbjct: 230 RSQQLPAEVKSMQRRRMMQQARARMMSAVPDADVVVTNPTHFAVALKYDGTKP-APIVVA 288 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 KGQ+LIA ++R++A EH++P+ E LARSL V + IP Y+AVAQ++ +Y Sbjct: 289 KGQDLIALQIRRLAAEHDVPVIENRPLARSLHATVEVGQMIPEDLYQAVAQVLAHVYR 346 >gi|311695200|gb|ADP98073.1| flagellar biosynthesis protein FlhB [marine bacterium HP15] Length = 341 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 143/282 (50%), Gaps = 12/282 (4%) Query: 76 DISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQRIPVLNLNHVKPSFKR 129 D+ H+ L S A+ + P L+L ++ GIG LI + V P R Sbjct: 39 DMRHMSVQLIESSKEAAWALSPILVLLLIAAIFGSIGIGGLLI------SGKAVAPKLNR 92 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 + +G+ R++S+ +L+ +K+ K+ LV + + L +L + H Sbjct: 93 MDPIKGLGRMFSMRSLIELVKAIAKVGLVMALAILILDLRTEDLLAIAEEPVVPAMEHVL 152 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 +T+ ++ + +D+ + + KL+M+KQE+KDE K + G P +K + + + Sbjct: 153 WTIAWSFFLLSCATIIIAAIDVPFQIYDHQKKLRMTKQEVKDEYKDTEGKPEVKGKIRQL 212 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R + +MM+ A ++ITNPTHYA+AL+Y Q AP++VAKG + +A K+ +IA E Sbjct: 213 QREMAQRRMMQDVPTADVVITNPTHYAVALKYDQKAMAAPIVVAKGADEVAFKIMEIARE 272 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + + I P L R+++ I IP Y A+AQ++ ++ Sbjct: 273 NKVEILRTPPLTRAVYHNTDIGEEIPDGLYMAIAQVLAYVFQ 314 >gi|325475307|gb|EGC78492.1| FlhB [Treponema denticola F0402] Length = 390 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 186/351 (52%), Gaps = 10/351 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ KI A EG S++ + +L +I L+ G Y S + V+ Sbjct: 35 EGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIM---GPYIFKSLMQVIAF 91 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNHVKPS 126 + ED+ + + + L + V P + ++ G+ +IQ R + + ++P Sbjct: 92 FFERCTTEDVVNGTWFRIFV-LYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQPD 150 Query: 127 FKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PH 182 FKRV+ R + ++S L N KS K++++G I + + N M+ + ++ P+ Sbjct: 151 FKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDFPN 210 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 SI++ A T ++L+ + + L++ D + Q+ LKMSK E+ DE K+ G+P++ Sbjct: 211 SIIFIAK-TAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPMV 269 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + ++ ++ ++ A ++ITNPTHYA+AL++ Q AP++++KG + A+ Sbjct: 270 KAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGVMPAPMVISKGVDATAQN 329 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+NIP E LAR+L+ V + IP +YK+++ + KIY K Sbjct: 330 IKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYKSLSIIFLKIYSMK 380 >gi|157373227|ref|YP_001471827.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3] gi|157315601|gb|ABV34699.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3] Length = 376 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 180/349 (51%), Gaps = 13/349 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTS 60 D +KTE + +K++ A ++G P S++ + + I+ C + L +F+ + V Sbjct: 3 KDTGQSKTEKATPQKLKKAQDQGQVPRSKDLAATALIIGCSLMLTASADWFATRVARVAQ 62 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPV 117 S T+ +L++ +++HL S ++ P ++L + + + + PV Sbjct: 63 ----YNMSLTKAELDEPG---MMMSHLGTSLVEILNILGPIIVLIAVLAMVAGSMPGGPV 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 N + + R+ GI R++S+ +LV +KS +KI+L+ I+ L N ++L + Sbjct: 116 FNFKNAAFKYSRIDPIAGIGRMFSMKSLVELVKSILKIVLLIGIMFTFLEHNLQSLLGYS 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + ++ + + + +T +D+ + Y +++LKMS+Q++KDE KQ Sbjct: 176 QLPIDEAVRKGIDILSLGMLYLGIGMLVITFIDVPYQYWHHHNELKMSRQDVKDEHKQQE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P IK + + + + R + A +A +++ NP HYA+AL+Y + DAP ++ KG + Sbjct: 236 GKPEIKAKIRQLQQRIGRSRADVAIPQADVLLVNPNHYAVALKYDVEKADAPYVLTKGTD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A MR+IA H++ + E P LAR+++ + IP + A+A ++ Sbjct: 296 ELALYMRQIAKHHDVEVIELPPLARAIYYSTQVEQQIPAALFIAIAHVL 344 >gi|196045084|ref|ZP_03112317.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB108] gi|196024086|gb|EDX62760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB108] Length = 348 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|30019814|ref|NP_831445.1| flagellar biosynthesis protein FlhB [Bacillus cereus ATCC 14579] gi|229127096|ref|ZP_04256093.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4] gi|29895359|gb|AAP08646.1| Flagellar biosynthetic protein flhB [Bacillus cereus ATCC 14579] gi|228656212|gb|EEL12053.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4] Length = 348 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G I + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYIAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVM 337 >gi|330976011|gb|EGH76077.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 355 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 125/227 (55%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 101 PKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEPLEQA 160 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P +K Sbjct: 161 MIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQ 220 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A K+R Sbjct: 221 RIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIR 280 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +I + I I E +LARS++ ++ IP Y AVAQ++ +Y Sbjct: 281 EIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 327 >gi|206896079|ref|YP_002246703.1| flagellar biosynthetic protein FlhB [Coprothermobacter proteolyticus DSM 5265] gi|206738696|gb|ACI17774.1| flagellar biosynthetic protein FlhB [Coprothermobacter proteolyticus DSM 5265] Length = 343 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 185/356 (51%), Gaps = 34/356 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSP------GI-YS 57 +TE PS +++E A+ EGN P S E + LF +L +Y F S G+ YS Sbjct: 5 ERTEPPSPRRLERAIQEGNVPQSPELTGAIGLFVFVLILRVYYPRFVSSWQRMWFGVFYS 64 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V+ + D++ V LL+ L + L+ L ++ G+ Y + +P Sbjct: 65 VSPETAA----------HDLA--VVLLSTLPVLLVPLLAVVLATLVLSGVRLYPKKMVP- 111 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L+ + P+ + IKRI+S+ +L +K+IL+ +++ L ++ + Sbjct: 112 -KLDGLNPA-------QNIKRIFSLQSLEQMGIGLLKVILL-SVVAYFLAKDRLVGIMSG 162 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + +P + + + +L+ ++ + + D + +W++ LKM+K+E+K+E+K Sbjct: 163 TQDPIQFMSLSASILTDILLYLVAVYLLIGLADYAFQRRRWWNSLKMTKEEVKEEMKSIE 222 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R +S R + + +AT++ITNPT YA+ALRY + AP LVAKG Sbjct: 223 GDPTVKARLRSRMRQYAMRRSLADVKKATVVITNPTEYAVALRY-EKGMVAPELVAKGAG 281 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A++++ A +N+P+ P LAR++F++V + I P Y+AVA ++ ++ KK Sbjct: 282 WLAQRIKDEARRYNVPVVVRPELARTIFRKVEVGDYITPDLYQAVAAVLVEVMKKK 337 >gi|138894758|ref|YP_001125211.1| flagellar biosynthesis protein FlhB [Geobacillus thermodenitrificans NG80-2] gi|134266271|gb|ABO66466.1| Flagellar biosynthetic protein [Geobacillus thermodenitrificans NG80-2] Length = 360 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 135/231 (58%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K + R++ +G+KR +S+ +V +KS +K ++GT++ L +L +S P Sbjct: 127 LKMDWNRLNPVKGMKRFFSLRAIVELLKSMLKTGIIGTVVFTLLFFERNELLALVSKPPG 186 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++L K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+I Sbjct: 187 AMLAVIGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLI 246 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R K R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A + Sbjct: 247 KSRIKQKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALR 306 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA + + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 307 IKEIAKANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|332533113|ref|ZP_08408982.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis ANT/505] gi|332037395|gb|EGI73849.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis ANT/505] Length = 376 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 182/359 (50%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 MSE D+ KTE P+ KK++++ +G S+E ++F I + + LL+ P I Sbjct: 1 MSE-DSGQEKTEEPTGKKVDESKKKGQVARSKELGTMFVLIFSAISLLLY--GPEIGKGL 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFM-MFG--IGSYLIQRI 115 ++ + S + + D + + + +S L+ P + +F+ +F IG+ L+ Sbjct: 58 YNIMGRMLSLNRNEAYDTTKMFAVWASVS---DVLIFPMAMFVFIILFAGIIGNTLLGGF 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + P ++S +G KR++ V K+ +K +V + L +F + Sbjct: 115 N-FSWQAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFSVVAGF-AVFLINTFFDEIL 172 Query: 176 FISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S P + + HA + + + + + + +D + + + +LKM+ QE+KDE K Sbjct: 173 HLSIEPAPNNIIHALEILAWMFLALSCTLVIIAAIDAPYQSYTHHKQLKMTMQEVKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AK Sbjct: 233 NSEGDPQIKARIRQTQRQMSQRRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A ++RK+A + +PI E P L R+L+ + IP + AVAQ++ ++ K Sbjct: 293 GIDEMAMQIRKVAIGNEVPILESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351 >gi|206974845|ref|ZP_03235760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus H3081.97] gi|217959252|ref|YP_002337800.1| flagellar biosynthesis protein FlhB [Bacillus cereus AH187] gi|206746864|gb|EDZ58256.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus H3081.97] gi|217068144|gb|ACJ82394.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH187] Length = 348 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 181/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337 >gi|127512310|ref|YP_001093507.1| flagellar biosynthesis protein FlhB [Shewanella loihica PV-4] gi|126637605|gb|ABO23248.1| flagellar biosynthetic protein FlhB [Shewanella loihica PV-4] Length = 377 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 176/355 (49%), Gaps = 9/355 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ND KTE + ++ E A +G S+E S++L P + Sbjct: 1 MADNDTSQEKTEEATPRRREQAREKGQVARSKELGT-SAVLMSAAVGFAVIGPSLGQSLM 59 Query: 61 DLHVLLASATQRKLEDISHI----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + L + +++++ D + + + + L++ + V+ L F+ F +G+ ++ I Sbjct: 60 SVMTKLFTMSRQEIYDTNSLFNIWMMVFKELAIPMASFVL--FLAFIAF-LGNVVLGGI- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + P +++ G KR++ + LV K K +V + + L+ + +L Sbjct: 116 TFSAKAFMPKGNKMNPISGFKRMFGVQALVELTKGIAKFSVVALMAYLLLSYYFNDILTL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + +Y+A + + I++ + V+D+ + +L+M+KQEIKDE K + Sbjct: 176 SQGHLPGNVYNALDLLVWMFIVLCSSTVIIVVIDVPFQIWNHNKQLRMTKQEIKDEYKDT 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K R + + R + +MM A +I+ NP HYA+A++Y T+ AP ++AKG Sbjct: 236 EGQPEVKGRVRQMQREMAQRRMMAEVPNADVIVVNPEHYAVAVKYDVTKAAAPYVLAKGV 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ Sbjct: 296 DDVAFKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQ 350 >gi|283784007|ref|YP_003363872.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] gi|282947461|emb|CBG87008.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] Length = 379 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 183/360 (50%), Gaps = 23/360 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + + KTE PS++K+ A EG P S++ L +S+ A + + F P + Sbjct: 3 DSSSEEKTEKPSAQKLRKAREEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVRESF 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVL 118 V + Q ++ + + + L H L ++ ++ L + G +L +P Sbjct: 62 VSVHQYAQ-EINNPAIVGQFLQHHLLIMAKFILTLLPMPAAALAASLIPGGWLF--LPKK 118 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--- 175 L P F +V+ +GI R++S +LV K VK +++ ++ +SL N+ + L Sbjct: 119 ML----PDFSKVNPLKGIGRLFSAEHLVETGKMMVKAVVILVMLWLSLRNNFASFLGLQA 174 Query: 176 --FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 F A + ++ +V + +++ +F A V+D+ + + LKM+KQE+K+E Sbjct: 175 LWFKQAVSDGLALYS--SVMRNFVILFVFFA---VIDVPLAKKMFTKGLKMTKQEVKEEY 229 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K G P +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VA Sbjct: 230 KNQEGKPEVKARVRRLQRQLAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVA 289 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + IA +R++A E + + E P LARS++ IN IP Y+A+A ++ + K Sbjct: 290 KGTDEIALYIRQVAAESQVEVVEFPKLARSVYYTTQINQQIPFQLYRAIAHVLTYVLQMK 349 >gi|228958050|ref|ZP_04119785.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801567|gb|EEM48449.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 348 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVM 337 >gi|224437175|ref|ZP_03658156.1| flagellar biosynthesis protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313143640|ref|ZP_07805833.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313128671|gb|EFR46288.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] Length = 377 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 189/355 (53%), Gaps = 17/355 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KT+APS+ KI A EGN S E + F +L L +F P + + + Sbjct: 2 ADEEKTQAPSTHKIAKAREEGNVSKSPELAGFFILLVGL-GAMFLLLPFWVEHSQKIFIH 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + S +++ D+ + L+ + L ++ P + M+ G+ + + Q +L+ +KP Sbjct: 61 INSLITQEV-DVRMLGDLMLSIGLEVFIMLAPLFVALMVTGVIANIAQFGLLLSPKAIKP 119 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ GIK + S+ L++ +K+ V I+ ++ ++F L +S S L Sbjct: 120 KLSKINPITGIKNVISLKKLLDGFMITLKV-FVAFIVGFAVFVSFFNELSSVS---MSGL 175 Query: 186 YHAFFTVRK------VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 Y R+ +++IL FI + V D +Q+ LKMS +E+KDE KQ + Sbjct: 176 YGQIMWFRQKALILIGVLLILFFI--MAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQS 233 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA---PVLVAKGQ 296 P IK + + + + ++MM+ A+++ITNPTHYA+ALRY + E + PV+VAKG Sbjct: 234 PEIKAKIRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYGEKEIEKGMPPVVVAKGI 293 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A +++ +A E+ I I E P LAR L++Q+ +N AIP + AV Q++ ++ + Sbjct: 294 DELAIRIKGVAREYEIRIIENPPLARELYRQLDLNQAIPHDLFAAVGQVLQEVAY 348 >gi|196247620|ref|ZP_03146322.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16] gi|196212404|gb|EDY07161.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16] Length = 360 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 135/231 (58%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K + R++ +G+KR +S+ +V +KS +K ++GT++ L +L +S P Sbjct: 127 LKMDWNRLNPVKGMKRFFSLRAIVELLKSVLKTGIIGTVVFTLLFFERNELLALVSKPPG 186 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++L K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+I Sbjct: 187 AMLAVIGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLI 246 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R K R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A + Sbjct: 247 KSRIKQKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALR 306 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA + + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 307 IKEIAKANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|229017055|ref|ZP_04173974.1| Flagellar biosynthetic protein [Bacillus cereus AH1273] gi|229023236|ref|ZP_04179746.1| Flagellar biosynthetic protein [Bacillus cereus AH1272] gi|228738030|gb|EEL88516.1| Flagellar biosynthetic protein [Bacillus cereus AH1272] gi|228744228|gb|EEL94311.1| Flagellar biosynthetic protein [Bacillus cereus AH1273] Length = 348 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 181/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + L Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D++ ++L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DVTEYLYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHALLQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337 >gi|168334564|ref|ZP_02692720.1| flagellar biosynthetic protein FlhB [Epulopiscium sp. 'N.t. morphotype B'] Length = 366 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 144/254 (56%), Gaps = 2/254 (0%) Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI-NNLVNFMKSFVKIIL 157 ++LF++ + SY V L +KP + + G K+I+ I ++L+ +K+ K+I+ Sbjct: 109 IVLFLVAFLASYWQVGFKV-TLEPLKPKLNKFNPVNGFKKIFGIRDSLIELLKNLFKVII 167 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 +GT+ ++ + L F +I + +R++ + L L D W ++ Sbjct: 168 LGTVFYNTIISQIPSFLGFYDLTIQNIAIYVADVIRQIGTNVGLAFLVLAYGDYRWQKYK 227 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277 + +KM+K ++K+E KQS G+P +K++ + R +MM+ A +IITNPTH+A+ Sbjct: 228 FEDSIKMTKHDVKEEFKQSEGDPAVKSKIRQKMREMSISRMMKTVPEADVIITNPTHFAV 287 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 A+ Y + + APV+VAKG + +A+++++IA N+ I E LAR+L+ V I SAIP Sbjct: 288 AIYYDRVKGIAPVVVAKGTDNMAQRIKEIAAISNVQIVENKPLARALYYTVDIGSAIPQE 347 Query: 338 FYKAVAQLIYKIYH 351 Y+AVA+++ +Y Sbjct: 348 LYEAVAEVLAFVYR 361 >gi|24374727|ref|NP_718770.1| flagellar biosynthesis protein FlhB [Shewanella oneidensis MR-1] gi|24349387|gb|AAN56214.1|AE015759_6 flagellar biosynthetic protein FlhB [Shewanella oneidensis MR-1] Length = 376 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 172/344 (50%), Gaps = 13/344 (3%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ ++++ A +G S+E + +L+ L + PGI S++ + + + Sbjct: 13 PTGRRLDQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN----HVKPSFKR 129 + D + + + S + P LL M+ + I + + +N + P + Sbjct: 72 IFDTNQ---MFNVWGVVGSEIGWP-LLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASK 127 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187 +S G KR++ + LV K K +V + + L +YF + +SA+ P ++ YH Sbjct: 128 MSPIAGFKRMFGVQALVELTKGIAKFSVV-ALASYLLLSHYFNDILLLSADHLPGNV-YH 185 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A + + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + Sbjct: 186 ALDLLVWMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVA 305 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 HNI I P LAR+++ ++ +P + AVAQ++ ++ Sbjct: 306 RAHNIAIVTAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQ 349 >gi|153831633|ref|ZP_01984300.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] gi|148872143|gb|EDL70960.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] Length = 375 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 184/360 (51%), Gaps = 30/360 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58 MSE + D KTE S +K++ A EG P ++E F++ + L +FF+S I+ Sbjct: 1 MSEQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVAMFFYSQLNSIWES 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRI 115 S + + T+ LE +V HL S + +++P + ++ GS ++ Sbjct: 57 MSGVFRYNMTLTKADLESPKQLV---EHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + +V P +++ GIKRI+S +LV +KS K++++ I+ L +N+ L Sbjct: 114 WMFRPANVMPKLSKLNPISGIKRIFSTRSLVELVKSTFKVLVIFGILYGYL-DNHLQPLL 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226 + P L F LIM +LF + VLDI + + +L+M+K Sbjct: 173 GMQNLP---LSQGF-----SLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTK 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K + G P +K R + I + R K+ + A ++ITNPTHYA+AL+Y + + Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLS 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 DAP +VAKG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344 >gi|21672516|ref|NP_660583.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008464|sp|Q8K9S1|FLHB_BUCAP RecName: Full=Flagellar biosynthetic protein flhB gi|21623138|gb|AAM67794.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 381 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 183/362 (50%), Gaps = 25/362 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP---GIYSVTS 60 +D + KTE P+ I+ +G SRE L L+ L+F S YS+ Sbjct: 3 HDINEEKTEQPTEHHIKKFRKKGETRYSRE-------LNSLLILIFGLSNLWWSRYSIIF 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV--- 117 +L ++ ++ ++I L ++S + +L + F S+LI I + Sbjct: 56 ELKTIMFNSFNFN-QNI-----LTNQQNISLNFFFFIKKILIVFFPFFSFLICIIIIPPI 109 Query: 118 ------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 N +K +F R++L G+K+ +S + K+ +K+ ++ I L ++ Sbjct: 110 LFGGIKFNFTSLKLNFARLNLLHGLKKFFSFQIFIELFKTTLKLFIISCISIFYLWIYFY 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 +L + N S L F + I+I+L + + +LD+ W +Y KLKM+ QEIKD Sbjct: 170 KILFLSTKNISSSLLDGFNVIFYCCILIILGLIPIVILDVFWRQWSYYKKLKMTHQEIKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K+ G+P IK R + + +R +M+ +A +IITNP HYA+AL+Y + +AP + Sbjct: 230 EFKEREGSPQIKARIRQQMKINLRRRMISDVPKADVIITNPIHYAIALKYDIHKMNAPKV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG A K++KIA ++ I I PSLAR+L++ I IP YKAVA+++ ++ Sbjct: 290 IAKGIGATAMKIQKIALKNGIAIIASPSLARALYRYSEIGQYIPGPLYKAVAEILAWVWK 349 Query: 352 KK 353 K Sbjct: 350 VK 351 >gi|289523553|ref|ZP_06440407.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503245|gb|EFD24409.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 367 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 185/368 (50%), Gaps = 43/368 (11%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + ++ A EG +++ L SS+ A L +L F+ G + L + Sbjct: 16 EEKTEPATPRRRRKAREEGQ--VAKSMDLVSSV-AILTGVLLLFAMGFF--------LFS 64 Query: 68 SATQRKLEDISHI--------------------VFLLTHLSLSASRLVIPGLLLFMMFGI 107 + Q + ++SH+ V+L T L+ L G++L + Sbjct: 65 TLKQFFVWELSHLSDDVNFRGQWIWRASARGLAVYLKTWFPLAI--LSALGVVLISFAQV 122 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 G +LI P++ P R++ G+K++ S+ +LV +K +K L+ +++ L Sbjct: 123 G-FLITPKPLV------PKLNRLNPVSGLKKVLSLRSLVELIKGLLKATLLASVLYFGLK 175 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 ++ T+L + L T+ + + + + + + + D + ++ +KMS+Q Sbjct: 176 KSLETLLLTMQMPLSGGLGILSKTILNLSLKMAIALFAIAIFDYAYQKWEFERSIKMSRQ 235 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIK+E KQ G+P +K R + R R +MM +A ++ITNPT A+A+ Y + D Sbjct: 236 EIKEEFKQLEGDPQLKRRIRQRQRELARRRMMAEVKKADVVITNPTRIAVAILYDKKIMD 295 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL-- 345 APV++AKG ++A K+R+ A +++IP+ + P LA +L+ V I IP YKAVA++ Sbjct: 296 APVVIAKGLGVVAGKIREEAIKYDIPLVQRPPLAWTLYNNVEIGEKIPEELYKAVAEILV 355 Query: 346 -IYKIYHK 352 +Y++ HK Sbjct: 356 FVYRLKHK 363 >gi|238025868|ref|YP_002910099.1| flagellar biosynthesis protein FlhB [Burkholderia glumae BGR1] gi|124695889|gb|ABN14283.1| FlhB [Burkholderia glumae BGR1] gi|237875062|gb|ACR27395.1| FlhB [Burkholderia glumae BGR1] Length = 408 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 178/365 (48%), Gaps = 31/365 (8%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 D+ KTE + ++ E A EG SRE + F+ +LA Y + S I Sbjct: 3 EDSDLEKTEDATPRRREKAREEGQVARSREFASFA-LLAAGFYGAWLLSGPIGEHLRTML 61 Query: 56 -------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108 + D H +L A + +E +S I +L L+A +G Sbjct: 62 RGSLTFDRASAFDTHQMLTGAGRAGMEGLSAIAPVLALTGLAAL---------AAPIALG 112 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 +L L+ + F R+ G+ RI+S ++ + K ++VG I I++ Sbjct: 113 GWL------LSTKAIGFKFDRLDPISGLGRIFSPQGVIQLGMALAKTVIVGGIGGIAIWR 166 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 ++ ML ++ H L V M + + + +D+ + Q+ KL+M+K+E Sbjct: 167 SHDEMLGLLNLPLHEALAGTLHLVAVCCGMTVAGMLVVAGMDVPYQIWQYNKKLRMTKEE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +K E ++S G+P +K R + R+ R +MM +A +++TNPTH+A+ALRY E A Sbjct: 227 VKREHRESEGDPHVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P ++AKG NL+A ++R++A EH +PI E P LAR+L+ V + IP Y AVA+++ Sbjct: 287 PKVIAKGVNLVALRIRELAEEHRVPILEAPPLARALYHNVDLEREIPGSLYSAVAEVLAW 346 Query: 349 IYHKK 353 +Y K Sbjct: 347 VYQLK 351 >gi|310816836|ref|YP_003964800.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare Y25] gi|308755571|gb|ADO43500.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare Y25] Length = 360 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 176/345 (51%), Gaps = 21/345 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE A +K+ P+ KK+EDA +G+ P S + ++ ++ + L + + + Sbjct: 1 MSEEAAGADKSHDPTPKKLEDARKKGDHPKSADLTIAAAYGGYYLGLTALGAGLALAAVN 60 Query: 61 DLHVLLASATQRKLEDIS---HIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 L LL A + S H+V LL+ SL+ V+P + + M + S QR Sbjct: 61 QLGGLLYHADGLATDAFSAPAHVVLRPLLSITSLA----VLPLITVPAMLALLSLFAQRA 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + + P R+S K+ + + ++ F+KS K++L + L+ N+ D Sbjct: 117 LVFAPSKLVPKLSRISPLAVAKQKFGLAGIIEFLKSAAKLLLYTGALAWFLSTNF----D 172 Query: 176 FISANP----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 I+A P S+L + +L++ L+ L VLD W + +MS+QE+ D Sbjct: 173 EIAATPAMPARSVLVFMGQMLAAMLLIALVISLVLGVLDAVWQQIRHLRDNRMSRQEVMD 232 Query: 232 EIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 E+K+S G+P + RQ+ IA + +++ +A++II NPTHYA+AL++ AP Sbjct: 233 EMKESEGDPHTRQQRRQRGIAIAM--NQVAAEVPKASVIIVNPTHYAVALQWQPDSRRAP 290 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 V +AKG + +A +MR+IA EH +PI +P AR+L+ Q + I Sbjct: 291 VCLAKGIDEVALRMRQIAQEHGVPIQSDPLTARALYAQTEVGQEI 335 >gi|315127306|ref|YP_004069309.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913] gi|315015820|gb|ADT69158.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913] Length = 376 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 179/359 (49%), Gaps = 19/359 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFF--FSPGIYSVTS 60 D+ KTE P+ KK++DA +G S+E ++F I + + L++ G+Y + Sbjct: 3 EDSGQEKTEEPTPKKVDDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYRIMG 62 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + + D + + + + A L+ P + +F++ + + I + Sbjct: 63 RM----LSLNRNETYDTTKMFAVWGEV---ADVLLFP-MSMFVLIIVLAAFIGNTMLGGF 114 Query: 121 N----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 N P ++S +G R++ + +KS +K LV I L +F + Sbjct: 115 NFSWQAAAPKASKMSPMKGFTRMFGPQAAIELLKSLLKFGLVAAF-AIFLINTFFDEILH 173 Query: 177 IS--ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S + P +I+ HA + + + + + + +D + + +LKM+ QE+KDE K Sbjct: 174 LSIESAPGNIV-HALEILAWMFLGMSCTLIIIAAIDAPFQSYSHNKQLKMTMQEVKDEYK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AK Sbjct: 233 NSEGDPQIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A ++RKIA + +PI E P+L R+L+ + IP + AVAQ++ ++ K Sbjct: 293 GVDELAMQIRKIALGNEVPIVESPTLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351 >gi|296502370|ref|YP_003664070.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171] gi|296323422|gb|ADH06350.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171] Length = 348 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337 >gi|113969638|ref|YP_733431.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-4] gi|114046868|ref|YP_737418.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-7] gi|113884322|gb|ABI38374.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-4] gi|113888310|gb|ABI42361.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-7] Length = 376 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 170/344 (49%), Gaps = 13/344 (3%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +L+ L + PGI S++ + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN----HVKPSFKR 129 + D + + + S + P LL M+ + I + + +N + P + Sbjct: 72 IFDTNQ---MFNVWGVVGSEIGWP-LLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASK 127 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187 +S G KR++ + LV K K +V I L +YF + +SA+ P ++ +H Sbjct: 128 MSPIAGFKRMFGVQALVELTKGIAKFSVV-AIAAYLLLSHYFNDILLLSADHLPGNV-HH 185 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A + + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + Sbjct: 186 ALDLLVWMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVA 305 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 HNI I P LAR+++ + IP + AVAQ++ ++ Sbjct: 306 RAHNIAIVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQ 349 >gi|167630310|ref|YP_001680809.1| flagellar biosynthetic protein flhb, putative [Heliobacterium modesticaldum Ice1] gi|167593050|gb|ABZ84798.1| flagellar biosynthetic protein flhb, putative [Heliobacterium modesticaldum Ice1] Length = 362 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 188/347 (54%), Gaps = 5/347 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++K+ +A +G S+E + + L L L S G+ ++ +++ Sbjct: 15 EKTEKPTAKRRSEARKKGQVAKSQEVN---TALILLFGFLALRSLGVQTMDGMERMMVYL 71 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVI--PGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 LE+++ + + T +++ +++ P +L M G+ + +Q + + +K + Sbjct: 72 LGTVTLEEVTPVSVITTGTTIAIRTMLMIAPFMLAAMAAGLLASYLQVGFLFSSEGLKMN 131 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + ++++ G+K I+S +LV +KS +K+ ++ + ++ ++ + + + + Sbjct: 132 WGKLNVIAGLKNIFSSRSLVELVKSLLKVSVISYVAYSAVVKHLHLFPKLLGMDVQTAVA 191 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V + + + + LD G+ +++ LKMSKQE+KDE KQ+ G+P IK++ Sbjct: 192 AISEVAYDVGFRVAVLLLLVAALDYGYQWYKHEESLKMSKQEVKDEFKQAEGDPQIKSKI 251 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K R +MM+ +A ++ITNPTH+A+AL+Y APV++AKGQ+ +A K+R + Sbjct: 252 KQRMREMAMRRMMQELPKADVVITNPTHFAVALKYESGSMTAPVVIAKGQDYVALKIRAV 311 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +H IP+ E+ LAR+L++ V I IP ++AVA++ +Y K Sbjct: 312 AQDHGIPLVEDKPLARTLYRAVEIGQEIPAELFQAVAEVFAFVYRLK 358 >gi|269960154|ref|ZP_06174530.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3] gi|269835125|gb|EEZ89208.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3] Length = 375 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 110/360 (30%), Positives = 186/360 (51%), Gaps = 30/360 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58 MSE + D KTE S +K++ A EG P ++E F++ + L +FF+S I+ Sbjct: 1 MSEQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVAMFFYSQLNSIWES 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRI 115 S + + T+ LE+ +V HL S + +++P + ++ GS ++ Sbjct: 57 MSGVFRYNMTLTKADLENPKQLV---EHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + +V P +++ GIKRI+S ++V +KS VK++++ I+ L +N+ L Sbjct: 114 WMFRPANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYL-DNHLQPLL 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226 + P L F LIM +LF + V+DI + + +L+M+K Sbjct: 173 GMQNLP---LSQGF-----SLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTK 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K + G P +K R + I + R K+ + A ++ITNPTHYA+AL+Y + + Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLS 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 DAP +VAKG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344 >gi|228984854|ref|ZP_04145024.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090732|ref|ZP_04221965.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42] gi|228692674|gb|EEL46400.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42] gi|228774804|gb|EEM23200.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 348 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +++ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYMMGMLLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|218233750|ref|YP_002366454.1| flagellar biosynthesis protein FlhB [Bacillus cereus B4264] gi|218161707|gb|ACK61699.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus B4264] Length = 348 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIREIKFIFLSILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|42525573|ref|NP_970671.1| flagellar biosynthesis protein FlhB [Treponema denticola ATCC 35405] gi|13122809|gb|AAK12645.1|AF232219_4 FlhB [Treponema denticola] gi|41815584|gb|AAS10552.1| flagellar biosynthetic protein FlhB [Treponema denticola ATCC 35405] Length = 390 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 186/351 (52%), Gaps = 10/351 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ KI A EG S++ + +L +I L+ G Y S + V+ Sbjct: 35 EGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIM---GPYIFKSLMQVIAF 91 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNHVKPS 126 + ED+ + + + L + V P + ++ G+ +IQ R + + ++P Sbjct: 92 FFERCTTEDVVNGTWFRIFV-LYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQPD 150 Query: 127 FKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PH 182 FKRV+ R + ++S L N KS K++++G I + + N M+ + ++ P+ Sbjct: 151 FKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDFPN 210 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 SI++ A T ++L+ + + L++ D + Q+ LKMSK E+ DE K+ G+P++ Sbjct: 211 SIIFIAK-TAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPMV 269 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + ++ ++ ++ A ++ITNPTHYA+AL++ Q AP++++KG + A+ Sbjct: 270 KAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGIMPAPMVISKGVDATAQN 329 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+NIP E LAR+L+ V + IP +Y++++ + KIY K Sbjct: 330 IKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYQSLSIIFLKIYSMK 380 >gi|46203826|ref|ZP_00050927.2| COG1377: Flagellar biosynthesis pathway, component FlhB [Magnetospirillum magnetotacticum MS-1] Length = 196 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 109/171 (63%), Gaps = 1/171 (0%) Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 F P + L K++ +L A + + D + H+W ++L+M+K+E+K E K+ Sbjct: 16 FAQLEPGAALQGTLSLALKMMGGMLAAYAGIALGDALYQRHRWRNRLRMTKEEMKQEHKE 75 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P +K R + + +SR++ +MM A AT+++TNPTH+A+ALRY + APV VAKG Sbjct: 76 SEGSPEVKARIRQLRQSRLKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPVCVAKG 134 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +A ++R +A EH++P+ E P LAR+L V +++ IP Y+AVA++I Sbjct: 135 VDSLALRIRAVAAEHDVPVMENPPLARALHATVEVDAEIPAEHYRAVAEVI 185 >gi|118581843|ref|YP_903093.1| flagellar biosynthesis protein FlhB [Pelobacter propionicus DSM 2379] gi|118504553|gb|ABL01036.1| type III secretion exporter [Pelobacter propionicus DSM 2379] Length = 324 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 144/262 (54%), Gaps = 9/262 (3%) Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVK 154 P ++ M+ I S++IQ + +F L G KR+++ LV +KSF+K Sbjct: 64 PLVVTVMLTSIASHVIQDGGRFEFQWQRVTFDITKLNPLNGFKRLFNKTALVEILKSFLK 123 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI---MILLFIATLTVLDI 211 ++++G I L + + A+ IL + K+++ I+L I+ L ++ + Sbjct: 124 LVVIGWIAYRVLKDEVQNIALLADADMVGILAYMGRVAFKIVVHTCGIMLIISILDLMYV 183 Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 W+Y LKM+KQE+KDE K+ NP IK + K + + +M + A ++ITN Sbjct: 184 KWNY---LDGLKMTKQEVKDEHKEQ-ENPEIKGQIKKMQYQAAKRRMTKIIPTADVVITN 239 Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTHYA+AL+Y + APV+VAKG +++A+ ++KIA E ++ + E LAR L+ QV N Sbjct: 240 PTHYAIALKYDRQRMIAPVVVAKGVDIMAQAIKKIAQESSVTLVENRFLARELYDQVEEN 299 Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353 AIP Y AVA+++ +Y K Sbjct: 300 EAIPETLYAAVAEVLAYVYRLK 321 >gi|319944146|ref|ZP_08018424.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC 51599] gi|319742640|gb|EFV95049.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC 51599] Length = 384 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 176/359 (49%), Gaps = 14/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59 M+E D + A S +++ A EGN P SR+ A L ++ + L P S+ Sbjct: 1 MAETSKEDRQLPA-SEQRLRKAREEGNVPRSRDVAHLL--VMGAGMGALALMGP---SLA 54 Query: 60 SDLHVLLASA----TQRKLEDISHIVFLLTHLS-LSASRLVIPGLLLFMMFGIGSYLIQR 114 + L+AS Q +L + + L H L L I LL I + I Sbjct: 55 DGMRRLMASTFAFDGQVRLYFLDALQPALAHFGDLGWRTLAI--LLSVCAAAIAASTIPG 112 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 L++ + R+S G+KRI+S+ NLV F+K + L+G I + + + Sbjct: 113 GFNLSVKALGVKISRISPASGLKRIFSLRNLVEFLKLSLLASLLGAIGSWYAMDRFPEFA 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + HA V L + +L + L + D+ + + + + L+M++ E K E + Sbjct: 173 ALSHGSLAGSVSHAMALVVGGLGLSMLLLFALALFDVPFQWFRHRADLRMTRDEAKREHR 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 +S G+P +K + +S R R +M+ A A I++ NPTHYA+A+RY + AP +VAK Sbjct: 233 ESEGDPQLKGQIRSRQREAARRRMLSAVPSADIVVVNPTHYAVAIRYDEAAGGAPRVVAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G + +A +++ IA E +P+ P LAR+L+ V ++ IP Y AVAQ++ +Y K Sbjct: 293 GLDELAMRIQAIARESGVPVLSAPPLARALYAHVELDQEIPQALYVAVAQVLVYVYQLK 351 >gi|323698077|ref|ZP_08109989.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. ND132] gi|323458009|gb|EGB13874.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans ND132] Length = 356 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/348 (28%), Positives = 184/348 (52%), Gaps = 13/348 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--VTSDLHVLL 66 +KTE + K+ + EGN +E ++LA ++ L F G YS T Sbjct: 8 SKTERATQKRRDKQREEGNVAKGQEIPKVMTLLAGVLTLRFMI--GFYSDQFTEIYRWTF 65 Query: 67 ASATQRKLED-ISHIVFL--LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 A +++ +++ +F L ++L LV+P +L+ + S +Q + + Sbjct: 66 LEAINFQVDKPMAYALFAWGLKKMAL----LVVPFMLVLALVAFLSLRLQVGSLWTTKPL 121 Query: 124 KPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +P F ++ ++ GIK++ S + L+ KS ++ + V I + + +L +N Sbjct: 122 EPKFGKLFNIMSGIKKLMLSPDALLKLGKSLLQAMAVAIAPYIVIRQELPNLLPLFHSNV 181 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 IL +++ L+ + + V D+ + + ++KM+K EIKDE KQ+ G+P Sbjct: 182 QGILAFIVTVGYRMVCYALIPMLLIAVADLVYERWNYEEQIKMTKDEIKDERKQAEGDPK 241 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK +Q+ + +M + +A ++ITNPTHYA+AL+Y + AP+++AKG N +A+ Sbjct: 242 IKQKQRQKMMEVMASRMFQDIPKADVVITNPTHYAVALQYDPLKAPAPLVLAKGVNKVAE 301 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +++++A E++IPI E LA++L+KQV I IP ++AVA ++ K+ Sbjct: 302 RIKEVARENSIPIEENRPLAQALYKQVEIGETIPEELFQAVAAILAKL 349 >gi|229155340|ref|ZP_04283450.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342] gi|228628055|gb|EEK84772.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342] Length = 348 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] Length = 613 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 182/340 (53%), Gaps = 2/340 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + KK D+ +G S++ S+ ++ AC + + + + + L L Sbjct: 265 DEKTEEATPKKKSDSKKKGQMARSKDVSVAITMAACTLAVSMLWGSLVDTFKGVLTYFLV 324 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ + L++ L + + +P L M+ G+ S +IQ ++ +KPS Sbjct: 325 FPSLKDFNELTAMS-LISFSLLKVATVFLPFALAIMIAGVASSIIQTGFLITGEPLKPSL 383 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G+K ++S +LV +K+ V + ++ + + NY +++ + S+ Sbjct: 384 GKINPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGDE 443 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + I L + + D + +LKM+KQEIKDE KQ+ G+P +K + K Sbjct: 444 IKNLVIGIFKQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMRKI 306 R +MM++ S AT++ITNPTH A+AL+Y + N +AP +VAKG + +A +++ I Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++++PI E LAR ++ +V I+ IP Y+ VA+++ Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVL 603 >gi|225871939|ref|YP_002753393.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC 51196] gi|225794521|gb|ACO34611.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC 51196] Length = 409 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 185/355 (52%), Gaps = 20/355 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP-------GIYSVTSD 61 +TE S ++ ++A +G+ P SR+ + +++LA + +L + P G YS D Sbjct: 4 ERTEKASPRRKQEAREKGDIPHSRDLTSAAAMLAGTL-VLGWAGPMWEARWAGSYSEMLD 62 Query: 62 LHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + +E + I ++T L LV+ L F + R Sbjct: 63 LSQPRSWLDGQMVEKMLAIRAAMMTVLWP----LVVMFLACFAAAVLAGVAQGRGVQFAG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +R++ +++ +S L +KS + + + + + E T + S Sbjct: 119 EAIAPKIERLNPLTVLQQTFSSRGLTRMLKSALPVAALACFVAGKVREQ--TAIPVFSLT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L+ + +++ V +LF+ + +D + W +L+MSKQE+++E KQ+ GNP Sbjct: 177 RLPSLFTSMYSL-MVAAAAVLFV--WSAIDYAVEWWSWEQRLRMSKQEVREEFKQTEGNP 233 Query: 241 IIKNRQKSIARSRIRHKMMEA-TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 ++ R SI R ++R K + A SRA+++ITNPTHYA+AL++ +AP ++AKG++L+ Sbjct: 234 EVRRRIASI-RRQLRRKALRADVSRASVVITNPTHYAVALQFSLELMEAPRVLAKGRDLL 292 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A+++++ A +P+ E P LAR+L++QV + +IP Y AVA ++ +Y + + Sbjct: 293 AEQIKQEARWAGVPLVENPPLARALYRQVEVGQSIPFALYAAVAAILAWLYRRDM 347 >gi|117919803|ref|YP_868995.1| flagellar biosynthesis protein FlhB [Shewanella sp. ANA-3] gi|117612135|gb|ABK47589.1| flagellar biosynthetic protein FlhB [Shewanella sp. ANA-3] Length = 376 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 170/344 (49%), Gaps = 13/344 (3%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +L+ L + PGI S++ + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMERAA 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN----HVKPSFKR 129 + D + + + S + P LL M+ + I + + +N + P + Sbjct: 72 IFDTNQ---MFNVWGVVGSEIGWP-LLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASK 127 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187 +S G KR++ + LV K K +V I L +YF + +SA+ P ++ +H Sbjct: 128 MSPIAGFKRMFGVQALVELTKGIAKFSVV-AIAAYLLLSHYFNDILLLSADHLPGNV-HH 185 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A + + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + Sbjct: 186 ALDLLVWMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVA 305 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 HNI I P LAR+++ + IP + AVAQ++ ++ Sbjct: 306 RAHNIAIVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQ 349 >gi|309388837|gb|ADO76717.1| flagellar biosynthetic protein FlhB [Halanaerobium praevalens DSM 2228] Length = 352 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 174/354 (49%), Gaps = 9/354 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D KTE P+SK+ ++A EGN +E ++LA ++L F + V +++ Sbjct: 3 DDGTGEKTEEPTSKRKKEAKEEGNVAKGKEIGQAITLLASFMFLYFLMQQIFFGVLNEIQ 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + I +L S + P +++ GI +Q + + Sbjct: 63 YYFKNLIIEPF-TIKMTFEILYDAFFSVIEKIYPIMIVTAAAGILVNFLQIGALFTTKPL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P K+V +G K I+S+ +V +KS K+ L+ I L N LD + + Sbjct: 122 VPDLKKVDPIKGAKNIFSLKGVVELLKSLFKLALIAVIAYHFLMGN----LDIFQKSINQ 177 Query: 184 ILYHAFFTVRKVL--IMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGN 239 L A + ++ + + IA + + + Y +W LKMSK E+K E K+ G+ Sbjct: 178 GLEEALSAIAHLISRMAFAVIIALIILGILDLLYQRWQHNKDLKMSKYEVKQERKEMEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+I+ ++K R ++MM + A ++ITNPTH A+AL Y E +APV+VAKG++ + Sbjct: 238 PMIQQQRKRRQREMSMNRMMSSVKDADVVITNPTHIAVALEYDLEEMEAPVIVAKGEDFV 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K+++ A E + I E LARSL K I +P Y+AVA+++ +I+ + Sbjct: 298 AQKIKEKAREAEVKIIENKPLARSLNKMSEIGDQVPIELYQAVAEILAEIFKNR 351 >gi|261839413|gb|ACX99178.1| flagellar biosynthetic protein [Helicobacter pylori 52] Length = 358 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/356 (28%), Positives = 178/356 (50%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E I I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESIQKL---------FNQLAKDTFLLLLPILIILVVMAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L I++L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALALISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|303248000|ref|ZP_07334266.1| type III secretion exporter [Desulfovibrio fructosovorans JJ] gi|302490557|gb|EFL50462.1| type III secretion exporter [Desulfovibrio fructosovorans JJ] Length = 357 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/352 (29%), Positives = 178/352 (50%), Gaps = 21/352 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + K+ + A +G+ S+E + + A L F I S+ DL + Sbjct: 6 SKTEQATQKRRDKAREKGSVARSQELPKLTVLFAGL----FVIRLTIRSLGDDLKEVFTL 61 Query: 69 ATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK- 124 ++L + + L LS + +++P L ++ I +++ QRI V ++ H K Sbjct: 62 FLGQRLHFEATVDAVNALFWMLSGKLAMMLLP---LLVVIAIIAFITQRIQVGSIWHSKL 118 Query: 125 --PSFKRV--SLREGIKRIYSINNLVNFMK--SFVKIILVGTIITISLTENYFTMLDFIS 178 P F + + K + + LV K + I V + I N F L + S Sbjct: 119 FEPDFSNLFNPIAALQKLLINPKTLVQLGKQVAMASAIAVAPYLIIKNKFNEFLPLFYQS 178 Query: 179 ANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + L FT+ + ++ IA L V W Y + LKM+K E+KDE KQ+ Sbjct: 179 TQSLTTFLLENGFTMVLYTLFPMVLIAVLDVWYTRWDYEE---NLKMTKDEVKDETKQAL 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P++K +Q+ ++ +M++ +A ++ITNPTH A ALRY E+ AP+L+AKG + Sbjct: 236 GDPVVKQQQRRKMMEVMQRRMLQDVPKADVVITNPTHLACALRYDPKESPAPLLLAKGAD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +A+K+++IA E+ IPI E LA++L+K V I IP Y+AVA ++ ++ Sbjct: 296 HLAEKIKEIARENRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQL 347 >gi|315654597|ref|ZP_07907503.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333] gi|315491061|gb|EFU80680.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333] Length = 367 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 186/344 (54%), Gaps = 13/344 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K++ EG S++ + + S+ A L + + Sbjct: 5 GEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARRQT---IT 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPS 126 + T K+ S +V L + ++P +L ++ + +IQ V + H+KP Sbjct: 62 AVTLTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGKGVFPSAKHLKPK 121 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + ++L +GIK++ + L N +K+ +K + VG ++ + ++ + + + A H L+ Sbjct: 122 LQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVIS----GVTEVMGAAGHISLW 177 Query: 187 H--AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + A+ + L++ IA + +VLD + + + + KMSKQEIK+E KQ G+P+I Sbjct: 178 NLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMI 237 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + +A + Sbjct: 238 KSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKY-EAGQGAPKVLAKGVDHVAAR 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ Sbjct: 297 IREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVL 340 >gi|227876759|ref|ZP_03994868.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC 35243] gi|307701577|ref|ZP_07638594.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris FB024-16] gi|227842656|gb|EEJ52856.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC 35243] gi|307613256|gb|EFN92508.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris FB024-16] Length = 373 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 151/257 (58%), Gaps = 10/257 (3%) Query: 95 VIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 ++P +L M+ + +IQ V + H+KP + ++L +G+K+I + L N +K+ + Sbjct: 89 LLPFMLAIMLVAVLVNIIQGKGVFPSAKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALL 148 Query: 154 KIILVGTIITISLTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIAT---LTVL 209 K + VG ++ + ++ +++ + A H S + K+ ++I + +++L Sbjct: 149 KTVAVGVVLYLIIS----GVMEIMGAAGHMSGRDLVNYGTDKMWLLIWASVIAGIVVSIL 204 Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269 D + + + + KMSKQE+K+E KQ G+P IK++++S A R++MM + A +++ Sbjct: 205 DALFIFKKNQKQTKMSKQEVKEEYKQQEGDPQIKSQRRSRALQMSRNRMMNDAAEADVVV 264 Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 NPTHYA+AL+Y + AP +VAKG + +A ++R+IA ++ +P+ E+ +LAR+L+ Sbjct: 265 VNPTHYAVALKY-EPGQGAPKVVAKGVDHLASRIREIALDNRVPMVEDVALARTLYSTAE 323 Query: 330 INSAIPPVFYKAVAQLI 346 I IP Y AVAQ++ Sbjct: 324 IGVEIPEELYTAVAQVL 340 >gi|91795014|ref|YP_564665.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans OS217] gi|91717016|gb|ABE56942.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans OS217] Length = 376 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/352 (27%), Positives = 174/352 (49%), Gaps = 14/352 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57 MSE D KTE + ++I A +G P S++ + + IL C + L +F+ I Sbjct: 1 MSETPKHD-KTEDATPQRIRKAREQGQVPRSKDLASAALILGCSLMLTSSADWFATKISQ 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR---LVIPGLLLFMMFGIGSYLIQR 114 +T + +L S ED+ +L HL S + L+ P L+ + + + Sbjct: 60 LTR--YNMLVSH-----EDLLQDDVMLMHLGTSLIKMLELLGPLFLIVALLAAIAGALPG 112 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P+ + + + R+ GI RI+S +L+ +KS +KI L+ I+ L + L Sbjct: 113 GPIFSFENANFKYSRIDPIAGIGRIFSSRSLIELLKSVLKITLLIGIMLSFLDTHLIDFL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + + ++ + L + + +D+ + Y +LKMS+QEIKDE K Sbjct: 173 SYSQLPVDEAVTRGIDMLSAGMLYLGLGLIVIAFIDVPYQYWHHLQELKMSRQEIKDEHK 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 Q G P +K + + + R + + +A +++ NPTHYA+AL+Y DAP ++ K Sbjct: 233 QQEGKPEVKAKIRQLQHRMGRSRADTSIPKADVLLVNPTHYAIALKYDPELADAPYVLTK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G+ +A MRK+A +H++ I E P+LAR+++ ++ IP + A+A ++ Sbjct: 293 GKEELALYMRKLAKQHDVEIIEIPALARAIYYSTQVDQQIPGALFMAIAHVL 344 >gi|322832554|ref|YP_004212581.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602] gi|321167755|gb|ADW73454.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602] Length = 384 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 104/348 (29%), Positives = 180/348 (51%), Gaps = 7/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+EAP++ ++E A EG P SRE +SIL L + G S+ L V+++ Sbjct: 8 EKSEAPTAHRLEKAREEGQIPRSRE---LTSILMLGGGLTLLWMSG-ESMARQLGVMISQ 63 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + +S +L ++ R V +P + ++ + + L+ + + + Sbjct: 64 GLKFDHGMVSDDRQVLQQMATLLGRAVWALLPVIGGLILIALAAPLLLGGLMFSGKSFEF 123 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F R+ G+KR++S L +K+ +K +LVGT+ + L + M+ ++ L Sbjct: 124 KFSRMDPIAGLKRLFSGQVLAELLKAVLKALLVGTVAGLYLWHKWPDMMRLMAQPTIPAL 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 A V +M++L + + D+ W KL+MSKQ+I+DE K G+P +K R Sbjct: 184 GEALNMVVFCGLMVVLGLTPMVGFDVFWQIWSNLKKLRMSKQDIRDEHKSQEGDPHVKGR 243 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +A ++R+ Sbjct: 244 IRQQQRAMARRRMMADVPKADVIVTNPTHYAVALQYSENKMSAPKVLAKGAGDVALRIRE 303 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + EH IP+ E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 304 LGVEHKIPMLEAPPLARALYRHSDIGQQIPATLYAAVAEVLAWVYQLK 351 >gi|308182928|ref|YP_003927055.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4] gi|308065113|gb|ADO07005.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4] Length = 358 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 103/356 (28%), Positives = 177/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E + SI I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|283782110|ref|YP_003372865.1| type III secretion exporter [Pirellula staleyi DSM 6068] gi|283440563|gb|ADB19005.1| type III secretion exporter [Pirellula staleyi DSM 6068] Length = 363 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 135/233 (57%) Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N + +R++ KRI++++NLV+ +K++L+G + +SL + T+L+ + Sbjct: 118 NKLAMDLERINPLNNSKRIFAVSNLVSLGFGLLKVLLIGVVAGLSLWQQRATILELTDQS 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I T I I + L +LD G+ + + L+M+ Q++++E+K+ G+P Sbjct: 178 AAVIGKFVLETALWTSIKIAAALLVLAILDYGYQWWKHEQDLRMTTQQVREEMKEQTGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 R+K I R + +++ + +A +I+TNPT A+AL+Y AP+++AKG ++A Sbjct: 238 QTMQRRKQIQRQLVMNRLSTSIPKADVIVTNPTELAIALQYDPNTMPAPIVIAKGAGVLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R++A E+N+P+ E LAR+L++ V +N +P Y AVA+++ +Y K Sbjct: 298 QRIRRLALENNVPVVERKELARALYQLVEVNQPVPSEQYAAVAEVVRYVYQLK 350 >gi|152965635|ref|YP_001361419.1| type III secretion exporter [Kineococcus radiotolerans SRS30216] gi|151360152|gb|ABS03155.1| type III secretion exporter [Kineococcus radiotolerans SRS30216] Length = 360 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/347 (29%), Positives = 174/347 (50%), Gaps = 20/347 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ KK+++A +EGN P SR+ + + S A + + G VLL Sbjct: 3 GEKTEKPTPKKLKEARDEGNIPFSRDVAAWLSTGAGAVTIPHTIESG--------QVLLR 54 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-----LFMMFGIGSYLIQRIPVLNLNH 122 A + +L+A+ IPG+L + + S +Q Sbjct: 55 KAFAGVGAVAADPEPARALAALAATFAGIPGVLGPLAAATVFAVVVSGGVQGTLRPAPKK 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP- 181 +KP F ++ G K+ + L KS +K +++GT++ + + +N P Sbjct: 115 LKPKFSNLNPVNGFKQHWGPQALWEGTKSLLKTVVIGTVMWL-VVKNLVPQFVGSGLMPL 173 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 S+L V K++ + +L + D SY + KL+MSKQ+IK E K + G+P+ Sbjct: 174 ASVLTLTKGAVVKIVAVTVLLGLIIAAGDYAMSYRRTMKKLRMSKQDIKMEHKNAEGDPL 233 Query: 242 IKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 +K R K +A SR ++MM + A +++ NPTH A+ALRY + AP +VAKG I Sbjct: 234 LKGAIRSKQMAMSR--NRMMSDVASADVVLVNPTHIAVALRY-EPGTGAPKVVAKGAGAI 290 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A K+R+ A E+++P+ ++ LAR+++K I IPP F+ AVA+++ Sbjct: 291 ASKIREKAKENDVPLVKDVQLARTMYKSCKIGQEIPPEFFAAVAKVL 337 >gi|206970587|ref|ZP_03231539.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH1134] gi|228952152|ref|ZP_04114244.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043525|ref|ZP_04191234.1| Flagellar biosynthetic protein [Bacillus cereus AH676] gi|229069320|ref|ZP_04202610.1| Flagellar biosynthetic protein [Bacillus cereus F65185] gi|229109225|ref|ZP_04238824.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15] gi|229144382|ref|ZP_04272787.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24] gi|229149974|ref|ZP_04278200.1| Flagellar biosynthetic protein [Bacillus cereus m1550] gi|206734223|gb|EDZ51393.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH1134] gi|228633496|gb|EEK90099.1| Flagellar biosynthetic protein [Bacillus cereus m1550] gi|228639013|gb|EEK95438.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24] gi|228674235|gb|EEL29480.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15] gi|228713807|gb|EEL65692.1| Flagellar biosynthetic protein [Bacillus cereus F65185] gi|228725747|gb|EEL76995.1| Flagellar biosynthetic protein [Bacillus cereus AH676] gi|228807506|gb|EEM54033.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 348 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|157376185|ref|YP_001474785.1| flagellar biosynthesis protein FlhB [Shewanella sediminis HAW-EB3] gi|157318559|gb|ABV37657.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3] Length = 377 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 175/355 (49%), Gaps = 9/355 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + ++ E + +G S+E + ++A + P I Sbjct: 1 MAENDSSQEKTEEATPRRREQSREKGQVARSKELGTSAVLMAAAVGFAMT-GPSIAKALY 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL----LLFMMFGIGSYLIQRIP 116 ++ +L + + ++ D ++ +FL+ + +L P L +L +M +G+ ++ I Sbjct: 60 NIMEMLFTLDRTQIFD-TNALFLI--WPVIGQQLAFPMLSFIAILTLMAFLGNIVLGGI- 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + P +++ G KR++ + LV K K +V L+ + +L Sbjct: 116 TFSTKAFMPKTDKMNPINGFKRMFGVQALVELTKGIAKFSVVALSAYFLLSYYFNDILAL 175 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + +YHA + + I++ + V+D+ + +LKM+KQEIKDE K + Sbjct: 176 SRDHLPGNVYHALDLLIWMFIILCSSTIIIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDT 235 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +K + + + R + +MM A +I+ NP HYA+A++Y + AP ++AKG Sbjct: 236 EGKPEVKGKVRQMQREMAQRRMMGEVPNADVIVVNPDHYAVAVKYDAMKATAPFVLAKGV 295 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A K+R+IA EH I I P LAR+++ I+ IP + AVAQ++ ++ Sbjct: 296 DEVAFKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQ 350 >gi|228920479|ref|ZP_04083824.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229189867|ref|ZP_04316877.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876] gi|228593541|gb|EEK51350.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876] gi|228839109|gb|EEM84405.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 348 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|269976286|ref|ZP_06183282.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1] gi|306817706|ref|ZP_07451448.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC 35239] gi|269935615|gb|EEZ92153.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1] gi|304649520|gb|EFM46803.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC 35239] Length = 373 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 151/257 (58%), Gaps = 10/257 (3%) Query: 95 VIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 ++P +L M+ + +IQ V + H+KP + ++L +G+K+I + L N +K+ + Sbjct: 89 LLPFMLAIMLVAVLVNIIQGKGVFPSAKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALL 148 Query: 154 KIILVGTIITISLTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIAT---LTVL 209 K + VG ++ + ++ +++ + A H S + K+ ++I + +++L Sbjct: 149 KTVAVGVVLYLIIS----GVMEIMGAAGHMSGRDLVNYGTDKMWLLIWASVIAGIVVSIL 204 Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269 D + + + + KMSKQE+K+E KQ G+P IK++++S A R++MM + A +++ Sbjct: 205 DALFIFKKNQKQTKMSKQEVKEEYKQQEGDPQIKSQRRSRALQMSRNRMMNDAAGADVVV 264 Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 NPTHYA+AL+Y + AP +VAKG + +A ++R+IA ++ +P+ E+ +LAR+L+ Sbjct: 265 VNPTHYAVALKY-EPGQGAPKVVAKGVDHLASRIREIALDNRVPMVEDVALARTLYSTAE 323 Query: 330 INSAIPPVFYKAVAQLI 346 I IP Y AVAQ++ Sbjct: 324 IGVEIPEELYTAVAQVL 340 >gi|297379968|gb|ADI34855.1| flagellar biosynthetic protein FlhB [Helicobacter pylori v225d] Length = 358 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 177/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E + SI I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + ++L L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQEL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|298346009|ref|YP_003718696.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC 43063] gi|315657498|ref|ZP_07910380.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236070|gb|ADI67202.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC 43063] gi|315491970|gb|EFU81579.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 367 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 186/344 (54%), Gaps = 13/344 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K++ EG S++ + + S+ A L + + Sbjct: 5 GEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARRQT---IT 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPS 126 + T K+ S +V L + ++P +L ++ + +IQ V + H+KP Sbjct: 62 AVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPSAKHLKPK 121 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + ++L +GIK++ + L N +K+ +K + VG ++ + ++ + + + A H L+ Sbjct: 122 LQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVIS----GVTEVMGAAGHISLW 177 Query: 187 H--AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + A+ + L++ IA + +VLD + + + + KMSKQEIK+E KQ G+P+I Sbjct: 178 NLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMI 237 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + +A + Sbjct: 238 KSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKY-EAGQGAPKVLAKGVDHVAAR 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ Sbjct: 297 IREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVL 340 >gi|196039022|ref|ZP_03106329.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus NVH0597-99] gi|196030167|gb|EDX68767.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus NVH0597-99] Length = 348 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337 >gi|304390233|ref|ZP_07372187.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326715|gb|EFL93959.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 367 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 186/344 (54%), Gaps = 13/344 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K++ EG S++ + + S+ A L + + Sbjct: 5 GEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARRQT---IT 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPS 126 + T K+ S +V L + ++P +L ++ + +IQ V + H+KP Sbjct: 62 AVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPSAKHLKPK 121 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + ++L +GIK++ + L N +K+ +K + VG ++ + ++ + + + A H L+ Sbjct: 122 LQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVIS----GVTEVMGAAGHISLW 177 Query: 187 H--AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + A+ + L++ IA + +VLD + + + + KMSKQEIK+E KQ G+P+I Sbjct: 178 NLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMI 237 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + +A + Sbjct: 238 KSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKY-EAGQGAPKVLAKGVDHVAAR 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ Sbjct: 297 IREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVL 340 >gi|88858095|ref|ZP_01132737.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] gi|88819712|gb|EAR29525.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] Length = 376 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 10/357 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+SKK+EDA +G S+E ++ I L+ + P I Sbjct: 1 MAEG-SDQEKTEEPTSKKLEDARKKGQIARSKETGTVVVLIMSAISLIIY-GPEIGMGLK 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + D + + + ++ + + G+ +F++ + + I + Sbjct: 59 RVMARLLDLNRTEAFDTTKMFAVWGDIA----KELWFGMTMFVLVILVAAFIGNTFLGGF 114 Query: 121 N----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 N P ++S +G+ R++ + K +K +LV + + ++ +L Sbjct: 115 NFSWSAAAPQANKLSPAKGLVRMFGPQAAIELFKGLLKFLLVAVTAVLLIKFYFYEILHL 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 S + HA + + + + + + V+D + +LKM+ QE+KDE K S Sbjct: 175 SLETAPSNIQHALTMLAWMFLGLSCTLILVAVVDAPFQLWNHNKQLKMTLQEVKDEYKNS 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AKG Sbjct: 235 EGDPQIKARIRRTQREMSQRRMMQDVPDADVIVTNPTHYSVALKYDTDRAGAPIVLAKGI 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA ++RKIA EH++PI E P L RSLF I IP + AVAQ++ +Y K Sbjct: 295 DEIALQIRKIAKEHDVPILESPMLTRSLFHTTDIGQQIPDQLFIAVAQVLAYVYQLK 351 >gi|229172415|ref|ZP_04299974.1| Flagellar biosynthetic protein [Bacillus cereus MM3] gi|228610886|gb|EEK68149.1| Flagellar biosynthetic protein [Bacillus cereus MM3] Length = 348 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S +P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---VPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|229132597|ref|ZP_04261445.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196] gi|228650829|gb|EEL06816.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196] Length = 348 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDRAIPEDLYVAVIEVM 337 >gi|32266517|ref|NP_860549.1| flagellar biosynthesis protein FlhB [Helicobacter hepaticus ATCC 51449] gi|32262568|gb|AAP77615.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC 51449] Length = 375 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 186/359 (51%), Gaps = 25/359 (6%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH-- 63 A + KT+APS+ KI+ A EGN S E + F +L L + I H Sbjct: 2 ADEEKTQAPSAHKIQKAREEGNVSKSPELAGFFILLVGLGLMFLLIPFWIECAQRIFHHI 61 Query: 64 --VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 +++ +R L + L+ + L ++ P L+ M+ G+ + + Q +L+ Sbjct: 62 NKLIILDVDRRLLGN------LMLSIGLEVFFMLAPLFLVLMITGVIANIAQFGLLLSPK 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +KP +++ GIK + S+ +++ +K+ V I+ ++ ++F L +S Sbjct: 116 AIKPKISKINPITGIKNVISLKKILDGFMITLKV-FVAFIVGFAVFVSFFNELPSVSM-- 172 Query: 182 HSILYHAFFTVRK------VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 S LY R+ +++IL FI + V D +Q+ LKMS +E+KDE KQ Sbjct: 173 -SGLYGQIMWFRQKALILIGVLLILFFI--MAVSDYLIKRYQYIKSLKMSIKEVKDEYKQ 229 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE---NDAPVLV 292 +P +K + + + + ++MM+ A+++ITNPTHYA+ALRY + E P+LV Sbjct: 230 YEQSPEVKAKIRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYSEKEIAQGMPPILV 289 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 AKG + +A +++ IA E++I I E P LAR L++Q+ +N IP + AV Q++ ++ + Sbjct: 290 AKGIDELAIRIKSIAREYDIKIIENPPLARELYRQLDLNQVIPHDLFAAVGQVLSEVAY 348 >gi|332297777|ref|YP_004439699.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM 12168] gi|332180880|gb|AEE16568.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM 12168] Length = 378 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 18/355 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLH 63 + +TE PS K+ A EG P S+E S L +LA ++ + F+ G + L Sbjct: 31 EGRTEQPSETKLRKAREEGRIPKSQELSGALVLLFPVLALIMLAPWLFT-GFIKI---LR 86 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNH 122 +L D + L + R+V+P L ++ GI + +IQ R + Sbjct: 87 FYFDRCVSVELNDPA----LAAEFFSAVIRMVLPVSLTALVAGIAANVIQNRGFLFTTKP 142 Query: 123 VKPSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P F ++ G K ++S N +KS +K+ ++ I + + +L + Sbjct: 143 IEPKFSKILPHFGEYFKKTLFSFEGAFNIVKSLLKVTVIFAAAYILVKNDLPKLLSLMDV 202 Query: 180 NPHS-ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + Y A T + ++I ++FI + + D Q+ +KMSKQE+K+E K+ G Sbjct: 203 SLWTGVAYIAGMTAKLLVIAAVIFI-VIAIPDYLVQRRQFMESMKMSKQEVKEEFKEMEG 261 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K+R + + M +++ ++ITNPTHYA+A+ Y + P++ AKG + Sbjct: 262 DPLVKSRIRQYMHQMLSQNMPANVAKSDVVITNPTHYAVAIEYDSSVMQGPMVTAKGVDS 321 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A++++ IA E+ +PI E LAR+L+ + I +P +Y+A+A ++ +Y+ K Sbjct: 322 LARRIKDIARENAVPIVENRPLARALYAEAEIGEIVPENYYQALAVILANVYNMK 376 >gi|300117307|ref|ZP_07055097.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1] gi|298725142|gb|EFI65794.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1] Length = 348 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +++ L L S P L+L F +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHSFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT ++ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFVVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|218896703|ref|YP_002445114.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus G9842] gi|218542717|gb|ACK95111.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus G9842] Length = 348 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 179/341 (52%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|260767957|ref|ZP_05876891.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|260615987|gb|EEX41172.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] Length = 376 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 181/352 (51%), Gaps = 13/352 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 MS+ + +KTE S +K++ A +G P ++E F++ + L ++F++ P I+ Sbjct: 1 MSDQASSQDKTEKASPQKVKKAREQGQIPRAKE---FTTAVIFLAVAIYFYAQLPAIWQS 57 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + S T+ L++ +V L H L++P L+ ++ + S +I + Sbjct: 58 IAGVFRYNLSLTRADLDNPMQMVEQLGHSLGMVIELLMPMFLVIIVVTLASSMILGGWLF 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ P +++ GI RI+S +LV +KS +K+ ++ ++ L + ML + Sbjct: 118 RPANLLPKLNKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLG-MQ 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 P L F + +L LL + V+DI + + +LKM+KQE+K+E K Sbjct: 177 GLP---LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G P IK R + I + R ++ + +A ++I NPTHYA+AL+Y +DAP +VAK Sbjct: 234 NNEGRPEIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + A ++++A ++ + I P L RS++ I A+P Y AVA ++ Sbjct: 294 GVDETALHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHIL 345 >gi|229096254|ref|ZP_04227227.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29] gi|229115209|ref|ZP_04244619.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3] gi|228668349|gb|EEL23781.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3] gi|228687214|gb|EEL41119.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29] Length = 348 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KSTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|163800125|ref|ZP_02194026.1| flagellar biosynthetic protein [Vibrio sp. AND4] gi|159175568|gb|EDP60362.1| flagellar biosynthetic protein [Vibrio sp. AND4] Length = 375 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 107/360 (29%), Positives = 182/360 (50%), Gaps = 30/360 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58 MSE + D K+E S +K++ A EG P ++E F++ L L +FF+S + Sbjct: 1 MSEQSSQD-KSEKASQQKVKKARQEGQIPRAKE---FTTALIFLAVTMFFYSQLNSTWES 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRI 115 S + + T+ LE+ +V H S + L+ +P + ++ GS ++ Sbjct: 57 MSGVFRYNMTLTKADLENPKQLV---EHFGQSLAVLIEMLLPLFTVIIIVTCGSSMVLGG 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + L V P +++ GIKRI+S +LV +KS VK++++ I+ L + +L Sbjct: 114 WMFRLASVMPKLSKLNPISGIKRIFSTRSLVELVKSTVKVLVIFGILYGYLNSHLQPLLG 173 Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226 + L F LIM +LF + V+DI + + +L+M+K Sbjct: 174 MQNLP----LSQGF-----SLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTK 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K + G P +K R + I + R K+ + A ++ITNPTH+A+AL+Y + + Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHFAVALKYEPSLS 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 DAP +VAKG + A +++IA E+ + I P L RS++ I AIP Y A+A ++ Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAIAHIL 344 >gi|332673425|gb|AEE70242.1| flagellar biosynthetic protein FlhB [Helicobacter pylori 83] Length = 358 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E I I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|217033738|ref|ZP_03439164.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10] gi|216943787|gb|EEC23227.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10] gi|317178869|dbj|BAJ56657.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F30] Length = 358 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E I I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|94496754|ref|ZP_01303329.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58] gi|94423767|gb|EAT08793.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58] Length = 375 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 176/358 (49%), Gaps = 14/358 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + +KTE P+ K++ DA +G+ S++ ++ + LLF +T Sbjct: 1 MAQKNDGGDKTEKPTPKRLRDARRKGDIAKSKDVGPALGMIMWFLLLLFAAGHAGAQITG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L +AT + + ++ L L + L+I G + G+ + +Q ++ Sbjct: 61 LMRDTLGTATSMPFDAAAPVLGWAALLVLVSVSLLILGPA--ALIGVIAEFVQVGALVTT 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KPS +++ EG+KR++S++NLV +K+ K L+ TI + L + + + A Sbjct: 119 EKLKPSLDKLNPIEGLKRMFSMDNLVELLKTVAKATLILTIAGVILWRSADGFVSLVQAA 178 Query: 181 PHSILYHAFFTVRKVLIMIL------LFIATLTVL------DIGWSYHQWYSKLKMSKQE 228 S + H V ++ ++ LF T + D W+ H + KL+MS+++ Sbjct: 179 GWSPVDHHGDQVASAMLALIRSVSIQLFAWTCAIFLLVAAADRAWAQHSFIKKLRMSRRD 238 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 IK E K + G+P+++ +++ + + A RA +++TNPTH A+AL Y + Sbjct: 239 IKQEHKDNEGDPMLRAQRRQLHEEWANQNAVAAAGRANVLLTNPTHLAIALDYDPEDCPV 298 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P++ AKG+ +A MR A +PI LAR ++ + + IP + A+A++I Sbjct: 299 PMVAAKGEGPLAAAMRAEAEREGVPIVRNIGLARGVWGESEVGGPIPRDRFDAIAEII 356 >gi|299066525|emb|CBJ37715.1| Flagellar biosynthetic protein flhB [Ralstonia solanacearum CMR15] Length = 363 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 104/364 (28%), Positives = 194/364 (53%), Gaps = 30/364 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +K++ + K++ A +G SR+A S + + ++F S G + Sbjct: 1 MADQDM--DKSQPATPYKLQKAREKGQVAKSRDAI---SAVTFTVAMVFLASQGWDTWRR 55 Query: 61 DLHV---LLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + LLA A + + H++ L L L IP LL ++ + L+Q Sbjct: 56 VFQINRALLAHAGNVDATEPAMWHLIDQLVRAVLG---LGIPFLLALLLAAVAGNLLQTG 112 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFT 172 P+ + +KP + R + +G KR++S+ L + ++ +K+IL+G + SL T ++ Sbjct: 113 PIFSFEPIKPEWSRANPVQGFKRLFSLRTLFDGARALLKLILLGLVAYFSLKSLTPQFYH 172 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + ++ L ++ + +L+FIA +LD+ ++ ++ K++MS +E+KDE Sbjct: 173 LASLPASGFVRTLLDDLASLGLKMSAMLMFIA---LLDLIYTRREFSKKMRMSHKELKDE 229 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMME------ATSRATIIITNPTHYALALRYIQTEN 286 K G+P I++R + ++RH+M++ T A ++ITNPTH A+ALRY+ E Sbjct: 230 FKHREGDPRIRSRLR-----KLRHEMLKRSRSVSKTRDADVLITNPTHVAVALRYVHGEM 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++P LVAKG +A MRKIA +H IP+ + +LAR+LF + ++ ++ P Y VA++I Sbjct: 285 ESPQLVAKGAGALAAVMRKIAAKHQIPVIQNRALARALFHSLEVDRSVQPALYADVARII 344 Query: 347 YKIY 350 ++ Sbjct: 345 VWVF 348 >gi|169831895|ref|YP_001717877.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis audaxviator MP104C] gi|169638739|gb|ACA60245.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis audaxviator MP104C] Length = 359 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 132/231 (57%), Gaps = 8/231 (3%) Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +R++ +G KRI+S L F K+ +KI VG + L +L +P LY Sbjct: 127 LERLNPVQGFKRIFSSRGLFEFAKAILKICFVGILCFWVLYARVGDLLVLSVTSPGQGLY 186 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN-- 244 + V + VLD+ + + + L M++ E++DE +Q+ G+P +K+ Sbjct: 187 LLHNVLLTVAAAAAGAYLLIAVLDLVYQRYAHHKSLMMTRFEVRDEYRQTEGDPHLKSWL 246 Query: 245 --RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 RQ+ I+ +RI+ ++ RAT+++TNP H A+ALRY + E DAP++ AKG +A++ Sbjct: 247 RKRQREISMNRIKDEV----PRATVVVTNPIHVAVALRYREGEMDAPLVTAKGAGYLAER 302 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++A +H +P+ E LA+ L+++VP+ ++P Y+AVA+++ IY K Sbjct: 303 IKELAAQHKVPVVENRELAQYLYRRVPVGESVPVAVYQAVAEILAMIYRLK 353 >gi|296282253|ref|ZP_06860251.1| flagellar biosynthesis protein FlhB [Citromicrobium bathyomarinum JL354] Length = 374 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 26/357 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE KT AP+ K++ DA N+G+ S++ + +L +L F P + S S Sbjct: 1 MSETAG--EKTFAPTEKRLRDAANKGDVLRSKDLGTAAVMLVGAAWLAFA-GPWLLSEIS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLS-------ASRLVIPGLLLFMMFGIGSYLIQ 113 +L ++ D ++ L+ + A ++I LL + FG G ++ + Sbjct: 58 NLLRESFQFDSSEIVDFRPDRLMIEGLTAALPPIFALAVPVIIVTLLSQLAFGRGRFVAK 117 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 L H R++ G+KR++ N L+ K +K++L+G + + + +Y + Sbjct: 118 N---LEFKHT-----RINPASGLKRMFGPNGLIEMGKGILKVVLLGGLAALWWSYSYENL 169 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L N L A+++V + +++ + + +D+ + + KLKMS QE+KDE Sbjct: 170 LGLGRGNLSQQLTTAWWSVISLFLVLCGGLVVIAAVDLPIQWVRRNKKLKMSHQEMKDEN 229 Query: 234 KQSYGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+S G+P K+ RQ+ IA + M EA +ITNPTH+A+AL Y + AP Sbjct: 230 KESEGSPEAKSARRQRQRDIAAGSVSGAMREAQ----FVITNPTHFAVALSYDPEKASAP 285 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +++AKG+ A M+++A E +P E P LARS++ I Y A+A ++ Sbjct: 286 IVLAKGRGEKALAMKELAREFGLPTLEYPQLARSVYFTSRERQVICEDLYGAIAAVL 342 >gi|229029449|ref|ZP_04185532.1| Flagellar biosynthetic protein [Bacillus cereus AH1271] gi|228731908|gb|EEL82807.1| Flagellar biosynthetic protein [Bacillus cereus AH1271] Length = 348 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|222095392|ref|YP_002529452.1| flagellar biosynthesis protein flhb [Bacillus cereus Q1] gi|228945372|ref|ZP_04107727.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|221239450|gb|ACM12160.1| flagellar biosynthetic protein [Bacillus cereus Q1] gi|228814344|gb|EEM60610.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 348 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +++ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + AIP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337 >gi|254464574|ref|ZP_05077985.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I] gi|206685482|gb|EDZ45964.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I] Length = 362 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 170/352 (48%), Gaps = 11/352 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ P+ +K+ A +G S + S+ ++ L +I F++ G SV Sbjct: 1 MSGQDDDSDKSFEPTEQKLRKAREKGEVAKSTDLSVAAAYLGLIIA---FYTAGSSSVEG 57 Query: 61 DLHVLLASATQRKLEDISHIVFL------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 L+A Q + ++ + F + SA R V+P L+ + S + QR Sbjct: 58 IGTALMAYLDQP--DRLAPLFFEGPAAAPVGGFIGSAFRPVLPWFLVPFALVLLSIVGQR 115 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V + ++P R+S+ K + L F KSFVK+ L + + L+ M+ Sbjct: 116 AMVFAPSKLEPKLSRISIVSNAKNKFGRAGLFEFFKSFVKLSLYSVCLGVYLSHRLPEMI 175 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 P S++ + L + L+ + V+D + + + K MS++EI+DE+K Sbjct: 176 ASSGTGPQSVVLMLAQLSMEFLFLALIIALAIGVVDAAFQHAEHLRKNMMSRKEIQDEMK 235 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P +K++++ + +M+ +A ++I NPTHYA+AL++ + APV VAK Sbjct: 236 DAEGDPHMKSQRRQRGQQIAMGQMLADVPKADVVIVNPTHYAVALQWSREPGAAPVCVAK 295 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + IA +R++A E+ IPI +P AR+L + I I Y VA I Sbjct: 296 GVDEIAAAIRRVANENAIPIHSDPPTARALHAAIGIGDEILEEHYAPVAAAI 347 >gi|313901501|ref|ZP_07834951.1| type III secretion exporter [Thermaerobacter subterraneus DSM 13965] gi|313468239|gb|EFR63703.1| type III secretion exporter [Thermaerobacter subterraneus DSM 13965] Length = 407 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 131/227 (57%) Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P ++RV+ G++R+ S LV +K+ VK+ ++ + +L ++ A ++ Sbjct: 108 PRWERVNPLAGLQRLVSRRALVELLKAPVKLAVMAAALGPALLGAGMQLITATGAPLPAM 167 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L A +++ +L L + + D + + + L+M+ QE K + K++ G+P+++ Sbjct: 168 LGLAGRSLQGLLWRGALAYLVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQ 227 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + R R +M++ RA +++TNPTH A+ALRY APV+VAKG + +A ++R Sbjct: 228 RIRQRQRHLARRRMLQEVPRADVVVTNPTHVAVALRYDPARMGAPVVVAKGVDFLALRIR 287 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A +H +P+ EEP+LAR+L++ V + IP FY AVA+++ ++ Sbjct: 288 ALAEQHGVPVMEEPALARALYRAVEVGREIPAAFYVAVAEVLAFVWR 334 >gi|238762378|ref|ZP_04623349.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638] gi|238699363|gb|EEP92109.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638] Length = 377 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 103/350 (29%), Positives = 176/350 (50%), Gaps = 13/350 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS N K+E P+S K+ A +G+ P S++ ++ + ++ L+ L F Y Sbjct: 1 MSSNSG--EKSEKPTSGKLLKARKKGDIPRSKDVTMAAGLVTSLVTLTLFLP--YYKELI 56 Query: 61 DLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-L 118 L T +++D + + LLT+LS+ LL + S L +P Sbjct: 57 GESFLAVGRTAGRIDDPAALEQLLLTNLSI-----FFKFLLTLTPIPLVSILATLVPSGW 111 Query: 119 NLNHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 N VK P FK++S GIK+I+S +N +K K +V + + + + +L Sbjct: 112 NFTPVKLIPDFKKLSPLAGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVNSSLVDLLRL 171 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + F +L+ + I +DI S + + K+KM+KQE+K E K + Sbjct: 172 QALPLQEAITEGFILYHGILVYFIAIIVIFAAIDIPLSKYLFTKKMKMTKQEVKLEHKSN 231 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP IKNR + + R ++ + A +IITNPTH+++AL+Y + AP ++AKG+ Sbjct: 232 DGNPEIKNRVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGK 291 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + IA +R IA ++I I E P LAR+++ +N +P Y+A+AQ++ Sbjct: 292 DDIALYIRTIAKNNDIEIVEFPPLARAIYHTTKVNQQVPIQLYRAIAQVL 341 >gi|159045796|ref|YP_001534590.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12] gi|157913556|gb|ABV94989.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12] Length = 362 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 171/353 (48%), Gaps = 13/353 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+++PD+K S KK+ DA +G S + + + LI L F G ++++ Sbjct: 1 MSEDESPDDKPFEASEKKLLDARKKGELVKSTDL-IATGSYGGLILGLVFAGAGTLTISA 59 Query: 61 -DLHVLLASATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + LL A E S I L ++ A L L M+ I S ++QR Sbjct: 60 ATMQGLLREADTLAPELFAGGASSISLTLILGTVGALSLW---FFLPMLGAIASLVLQRA 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V ++P R+S+ K + L F+KS K+++ ++ + TM+ Sbjct: 117 LVFAPTKLEPKLNRISILSNAKNKFGREGLFEFLKSTFKLVVFSILLGLLFMYELDTMIS 176 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTV--LDIGWSYHQWYSKLKMSKQEIKDEI 233 + +I+ F+ + + + L+F+ATL + +D W Q K +MS+QE+ DE Sbjct: 177 LAAQPVSAIIGFVFYLL--IEFLALVFLATLLIGGVDYIWQRAQHLRKNRMSRQEVVDET 234 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G+P K ++ A +M+ A++++ NPTHYA+AL++ + AP++VA Sbjct: 235 KSAEGDPHSKQYRRQRAIEIATQQMLADVPDASVVVVNPTHYAVALKWDRFSPTAPIVVA 294 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + +A +R+ A E +PI +P AR+L+ + IP +KAVA I Sbjct: 295 SGVDHVAAAIRQRAQEAGVPIHRDPPTARALYATCKLGQEIPRAQFKAVAAAI 347 >gi|315179661|gb|ADT86575.1| flagellar biosynthetic protein FlhB [Vibrio furnissii NCTC 11218] Length = 376 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 181/352 (51%), Gaps = 13/352 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 MS+ + +KTE S +K++ A +G P ++E F++ + L ++F++ P I+ Sbjct: 1 MSDQASSQDKTEKASPQKVKKAREQGQIPRAKE---FTTAVIFLAVAVYFYAQLPAIWQS 57 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + S T+ L++ ++ L H L++P L+ ++ + S +I + Sbjct: 58 IAGVFRYNLSLTRADLDNPMQMIEQLGHSLGMVIELLLPMFLVIIVVTLASSMILGGWLF 117 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ P +++ GI RI+S +LV +KS +K+ ++ ++ L + ML + Sbjct: 118 RPANLLPKLSKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLG-MQ 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 P L F + +L LL + V+DI + + +LKM+KQE+K+E K Sbjct: 177 GLP---LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYK 233 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G P IK R + I + R ++ + +A ++I NPTHYA+AL+Y +DAP +VAK Sbjct: 234 NNEGRPEIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAK 293 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + A ++++A ++ + I P L RS++ I A+P Y AVA ++ Sbjct: 294 GVDETALHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHIL 345 >gi|229178177|ref|ZP_04305548.1| Flagellar biosynthetic protein [Bacillus cereus 172560W] gi|228605307|gb|EEK62757.1| Flagellar biosynthetic protein [Bacillus cereus 172560W] Length = 348 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FNQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|163939579|ref|YP_001644463.1| flagellar biosynthesis protein FlhB [Bacillus weihenstephanensis KBAB4] gi|163861776|gb|ABY42835.1| type III secretion exporter [Bacillus weihenstephanensis KBAB4] Length = 348 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 178/344 (51%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|307293817|ref|ZP_07573661.1| type III secretion exporter [Sphingobium chlorophenolicum L-1] gi|306879968|gb|EFN11185.1| type III secretion exporter [Sphingobium chlorophenolicum L-1] Length = 379 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 179/362 (49%), Gaps = 24/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ KTE P++KK++DA +G+ SR+ + ++A + ++ P SV Sbjct: 1 MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVT-GP---SVVR 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSL-SASRLVIPGLLLFMMFGI--GSYLIQRIPV 117 L +L A + + EDI + +L S L + G++L + G L+ + Sbjct: 57 SLSDMLTEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPALLGSLG- 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTM 173 P +++ G+KR++ + L+ +KS K+ L+G I I LTE Sbjct: 116 FRPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSIAKVSLLGAIGVWMIWDRLTE----- 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEI 229 I S L A + + IM L +A + +D+ Q +L MSKQEI Sbjct: 171 ---IVGLGKSGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEI 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 KDE K+S G+P +K + + +A + A++IITNPTH+A+ALRY ++ AP Sbjct: 228 KDEHKESEGSPELKGHIRRKQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V+VA+G + IA +R++A ++ + + + P LAR+++ + Y AVA ++ + Sbjct: 288 VVVARGCDAIAAAIRELADQNGVTVLQYPDLARAIYFTSRAGQIVNEGLYMAVATVLAFV 347 Query: 350 YH 351 + Sbjct: 348 FR 349 >gi|85706162|ref|ZP_01037257.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217] gi|85669326|gb|EAQ24192.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217] Length = 362 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 169/349 (48%), Gaps = 13/349 (3%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 E D + EA S K+++A +G S + + S L+ LL P + ++ Sbjct: 3 GEEDESEKPHEA-SQNKMDEARKKGEIARSADLNTAGSYGGLLLALLALGGPVSQTTGAN 61 Query: 62 LHVLLAS--ATQRKLEDISH----IVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQR 114 L VLL A L H + +LT ++L+ S L ++P + + + + QR Sbjct: 62 LAVLLGQPHAFADLLFQGGHASAALGTVLTKVALAVSALFLLPAAVTLL-----TVIAQR 116 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V+ + ++P R++ E K + + L F KS K+ L ++ + L+ M+ Sbjct: 117 AFVIAPSKLEPKLSRINPIENAKNKFGASGLFEFGKSIAKLSLYCILLGLFLSYRMSEMV 176 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + A P I + + L+++LL + D W + + + +MS E++DE K Sbjct: 177 GALHAEPAMIGVMIGQLIIEFLLVVLLITLAVGAADFTWQFFEHLRRQRMSHMELRDEFK 236 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 Q+YG+P +K + + +MM + ++I NPTHYA+AL++ + AP+ VAK Sbjct: 237 QNYGDPAVKQQHRRRGMDIASRQMMAEVPGSDVVIVNPTHYAIALKWSRAPGAAPICVAK 296 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 G + IA +R +AYE +P+ ++P+ AR+L I I P +Y AVA Sbjct: 297 GVDHIALAIRDLAYESGVPVQQDPATARALHATTEIGQEIDPTYYAAVA 345 >gi|46562156|ref|YP_009141.1| hrpY/hrcU family type III secretion protein [Desulfovibrio vulgaris str. Hildenborough] gi|46447693|gb|AAS94359.1| type III secretion protein, hrpY/hrcU family [Desulfovibrio vulgaris str. Hildenborough] gi|311235485|gb|ADP88338.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris RCH1] Length = 346 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 87/338 (25%), Positives = 166/338 (49%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P+ K++ +A +G+ S++ ++LA Y F G S + V S Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAF---AGESIFASLMEVTELS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + L T + +A +V+P + L MM L Q + P + Sbjct: 60 MRHMAMPFDEALPLLGTAVVHAAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +S + K+++S+ N V +K+ +K+ ++G + ++++ + + +L Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLKVL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +++M + + LD + Q+ + M+K E+K E K+ G+P IK ++K Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +A +I+TNPTH+A+AL Y + PV++AKG+ L+A++M +IA Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ + LARSLF + N+ IP VA+++ Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVL 337 >gi|47565438|ref|ZP_00236479.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241] gi|47557428|gb|EAL15755.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241] Length = 348 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|238916767|ref|YP_002930284.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC 27750] gi|238872127|gb|ACR71837.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC 27750] Length = 372 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 180/357 (50%), Gaps = 18/357 (5%) Query: 5 DAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D P KTE +SKK++D EG S+E S++ I + + I + D Sbjct: 16 DGPGGEKTEPATSKKLDDVRKEGQVAKSKELITAVSLMTLFIIIKIYVG-NIGTKLIDSF 74 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVI-------PGLLLFMMFGIGSYLIQRIP 116 + + ++D S V + S+++ I ++ ++ +G+ L QR Sbjct: 75 KTIYGLMGKVIDDSSKGVTVNMAASIASQAFTIILNAVIPILIIAVIIAILGNALQQRW- 133 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++ + P +++ G KR++S+ L +K+ + ++ ++ + +N +L F Sbjct: 134 MVTAKPLAPKASKINPLNGFKRLFSVRQLFELLKAIAMMSIIVIMVYNCVKKNMNILLTF 193 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIKDE 232 LY A TV ++I + + I+ + +D+ + H++ + M+KQE+KDE Sbjct: 194 YDVT----LYTALATVGNIIINLGIQISAVFLVVGFVDLLYQRHKFKNDNMMTKQEVKDE 249 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + G+P +K + + + R +MM+ A ++ITNPTH+A+AL+Y E APV++ Sbjct: 250 FKNAEGDPQVKGQIRRKMQEISRRRMMQQLPEADVVITNPTHFAVALKYEPDEGKAPVVI 309 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 AKG + +A +++ A E+NI I E LAR L+ V I + IPP Y AVA+++ + Sbjct: 310 AKGADYLAFQIKDRAKEYNIAIVENKPLARILYHNVDIGTEIPPELYYAVAEILASV 366 >gi|242280058|ref|YP_002992187.1| flagellar biosynthesis protein FlhB [Desulfovibrio salexigens DSM 2638] gi|242122952|gb|ACS80648.1| type III secretion exporter [Desulfovibrio salexigens DSM 2638] Length = 353 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/360 (26%), Positives = 180/360 (50%), Gaps = 37/360 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL---------------LFFFSP 53 +KTE + K+I+ A +G+ E +++A +I L +FF+ Sbjct: 6 SKTEKATPKRIDKARKDGSVAKGEEMGKIMTLIAGVICLRAIMDMYYEQFYEIFQWFFTK 65 Query: 54 GIY--SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 GI+ ++ L +Q+ + + + ++ RL + L +F Sbjct: 66 GIFIDLDKQSVYQLFQWCSQKLALILLPLFLFIAFIAFLVLRLQVGKLWTTKVF------ 119 Query: 112 IQRIPVLNLNHVKPSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTEN 169 KP F ++ +L +G KR I+++ ++ +KS + I+VG I + Sbjct: 120 ------------KPKFSKMFNLVQGFKRLIFNVKTIIRLVKSLLFAIIVGIAPYIIIKNE 167 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 L ++ H + + K++ +L + L + D+ + + + ++KM+K E+ Sbjct: 168 VGNFLPLFYSSAHELAIYMLQIGYKMVTYTMLPMLVLALADLWYQRYNYQEEMKMTKDEV 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 KDE KQ+ G+P IK +QK + ++ +MM A ++ITNPTHYA+AL+Y AP Sbjct: 228 KDERKQAEGDPKIKQQQKQKMMAILQQRMMAEVPNADVVITNPTHYAIALKYDPMVAPAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +++AKG N +A++++++A E+ +PI E LA++L+KQV I IP YKAVA ++ K+ Sbjct: 288 LVLAKGMNKVAERIKEVARENKVPIRENKPLAQALYKQVEIGDIIPEELYKAVAAILAKL 347 >gi|89069813|ref|ZP_01157148.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus HTCC2516] gi|89044614|gb|EAR50730.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus HTCC2516] Length = 359 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 6/349 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS +D D E P+ KK++DA +G+ P S + + ++ L+ L + + S Sbjct: 1 MSHDDGADKSFE-PTQKKLDDARRKGDLPRSADLTTAAAYAGFLLAALALGGGVVDGMGS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L+ A E + + + L+A+ + P LL + + + QR V Sbjct: 60 LLRALVERADALSAEMFAGGAAPRSGAVILAAAGALAPILLGPAAAALVAVIAQRGLVFA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + P R+S K+ + L F KSF K+ + + + L+ ++ I Sbjct: 120 PSKLAPKLSRISPLSTAKQKFGRTGLFEFAKSFAKLTIYSITLGLFLSARLPDIVGTIGM 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P I + +L++++L A + LD+ + K +MS++E+ DE+KQS G+ Sbjct: 180 APAIIAGELLRLMLDLLLVVVLIAAAIGALDLLFQRADHLRKNRMSRKEVTDEMKQSEGD 239 Query: 240 PIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 P +K RQK++A + +MM A ++I NPTHYA+AL++ + APV VAKG + Sbjct: 240 PAMKQQRRQKAVAIATT--QMMADVPTADVVIVNPTHYAVALKWDRGSPGAPVCVAKGVD 297 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA ++R++A EH IP+ +P AR+LF + I + I P Y+AVA I Sbjct: 298 AIAARIRELALEHVIPLHSDPPTARALFAETEIGAEIHPDHYRAVAAAI 346 >gi|126734112|ref|ZP_01749859.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2] gi|126716978|gb|EBA13842.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2] Length = 361 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 172/355 (48%), Gaps = 16/355 (4%) Query: 1 MSENDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-FSP-GIYS 57 MS + D +K PS KK++DA +G I+R A L ++ + L P + Sbjct: 1 MSGQEEEDSDKQYEPSQKKLDDARKKGE--IARSADLTTAAAYAGLLLAMLTIGPVALLD 58 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL------VIPGLLLFMMFGIGSYL 111 +++ L +LL + D+S + F +L L V P + + I S + Sbjct: 59 LSTSLSILLEQSN-----DLSSLAFAGGGTALHGGILREVAWGVAPWFAVPAVLAIVSVI 113 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 +QR + + + P R+S G+K + L F KS K+ + ++ L Sbjct: 114 LQRGFLFTGSKLVPKLNRISPISGVKNKFGRQGLFEFAKSSTKLTIYCVVLGFFLVGQIE 173 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 ++ + P I+ + ++ ++LL L +D W + K +MS++E+ D Sbjct: 174 RIIGSMQLPPRLIIAELGHMLLALMGIVLLISLALGTIDFLWQRAEHTRKNRMSRKEMMD 233 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E+KQS G+P IK +++ +KM+ A ++I NPTHYA+AL++ +++ AP+ Sbjct: 234 ELKQSEGDPFIKQQRRQRGHDIATNKMLLDVPTADVVIVNPTHYAIALKWDRSQAMAPIC 293 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 VAKG + +A ++R+IA E +P+ +P AR+L +V + I Y+AVA I Sbjct: 294 VAKGVDEVAARIREIAAESAVPMHSDPPTARALHAEVTLGQEISQHHYRAVAAAI 348 >gi|254511494|ref|ZP_05123561.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium KLH11] gi|221535205|gb|EEE38193.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium KLH11] Length = 362 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 31/348 (8%) Query: 15 SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDLHVLLASATQR 72 + +K+E A +G S + S+ ++ I LL + G Y+ L V+L Sbjct: 15 TPQKLEKARKKGEVAKSNDLSVVAAYAGLFIALL---TAGQYTAQNLGTLFVVL------ 65 Query: 73 KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------------QRIPVLNL 120 ++ I LLT + + + G+L M + + I QR V Sbjct: 66 -IDQSDQIATLLTQ---GPAVVPVAGMLKAAMVPVSALFIVPAAAVLLSLIAQRALVFAP 121 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP R+S+ K + L F KSFVK+++ GT + + L + +L SA Sbjct: 122 SKLKPRASRISIPSNAKNKFGRGGLFEFAKSFVKLLIYGTCLALFLQAHLPEILT-ASAA 180 Query: 181 P--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P SIL R + I+I + +A + ++D W + + K +MS++E++DE K S G Sbjct: 181 PARSSILLMMTLLTRFLFIVITIALA-IGIVDYLWQHAEHMRKNRMSRKEVQDETKDSEG 239 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K +++ A+ ++MM +A ++I NPTHYA+AL++ + APV VAKG + Sbjct: 240 DPHVKQQRRQRAQEIAANQMMADVPKADVVIVNPTHYAVALKWSREAGSAPVCVAKGVDE 299 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +R A + +PI +P AR+L V I + +Y+ VA I Sbjct: 300 VAATIRATADDAGVPIHSDPPTARALHATVEIGQEVTEEYYRPVAAAI 347 >gi|94968667|ref|YP_590715.1| type III secretion exporter [Candidatus Koribacter versatilis Ellin345] gi|94550717|gb|ABF40641.1| type III secretion exporter [Candidatus Koribacter versatilis Ellin345] Length = 351 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 183/353 (51%), Gaps = 14/353 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE P+ ++ + A +G SRE +I+ L+++L S +++ L Sbjct: 2 ADSSKTEQPTQQRRKKAREKGQVARSRELPGALTIIVVLVWILSLNSVALFTWRGFYRSL 61 Query: 66 LASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L A L++++ LL + ++A V+P L F + S L+Q V + + Sbjct: 62 LQQAA---LQELTLSPALLQKTIWVAAQWTVVPMLGAFAI-ATASTLLQGGFVFSSEALA 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF----ISAN 180 +R+S +K+I+S L N +KS + + + + + T + ++ Sbjct: 118 WKPERLSPGHRLKQIFSAAGLSNTLKSLLPFAAILWLAVSQIRSEWVTFIRLGGLPVARI 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L V K +++LL+ + LD + LKMS++EIK E K+S GNP Sbjct: 178 GSWLLAQCVALVWKCCLVLLLW----SALDYLLQRQRLEGDLKMSREEIKQEFKESEGNP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R R +M+ A AT+++TNPTHYALAL Y + + APVLVAKG + +A Sbjct: 234 QVKAKIRRMQRQVRRQQMLHAVKAATVVVTNPTHYALALEY-RPDFAAPVLVAKGLDRLA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++++A H IP+ E +LA +L++ V + AIP + AVA+++ +Y + Sbjct: 293 EEIKQVAIWHEIPLVENRALAHALYRSVEVGQAIPSKLFTAVAEVLAAVYRAQ 345 >gi|317177398|dbj|BAJ55187.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F16] Length = 358 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E I I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLTIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|300982207|ref|ZP_07175919.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS 200-1] gi|300307277|gb|EFJ61797.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS 200-1] Length = 247 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 127/215 (59%) Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A V ++ Sbjct: 1 MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 60 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 ++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + + R+ R +M Sbjct: 61 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 120 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 M +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+N+P E P Sbjct: 121 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 180 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L++ I IP Y AVA+++ ++ K Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215 >gi|229078951|ref|ZP_04211503.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2] gi|228704365|gb|EEL56799.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2] Length = 348 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FNQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|324325787|gb|ADY21047.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 348 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +++ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYMMGMLLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|229121321|ref|ZP_04250552.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201] gi|228662166|gb|EEL17775.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201] Length = 348 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +++ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|120586865|ref|YP_961210.1| YscD family type III secretion protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564279|gb|ABM30022.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris DP4] Length = 346 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/338 (25%), Positives = 166/338 (49%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P+ K++ +A +G+ S++ ++LA Y F G S + V S Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAF---AGESIFASLMEVTELS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + L T + +A +V+P + L MM L Q + P + Sbjct: 60 MRHMAMPFDEALPLLGTAVVHAAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +S + K+++S+ N V +K+ +K+ ++G + ++++ + + +L Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFAIPDGDIGLLLKVL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +++M + + LD + Q+ + M+K E+K E K+ G+P IK ++K Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +A +I+TNPTH+A+AL Y + PV++AKG+ L+A++M +IA Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ + LARSLF + N+ IP VA+++ Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVL 337 >gi|30261773|ref|NP_844150.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Ames] gi|49184607|ref|YP_027859.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Sterne] gi|49480930|ref|YP_035888.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143694|ref|YP_083139.1| flagellar biosynthesis protein FlhB [Bacillus cereus E33L] gi|65319050|ref|ZP_00392009.1| COG1377: Flagellar biosynthesis pathway, component FlhB [Bacillus anthracis str. A2012] gi|118477201|ref|YP_894352.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis str. Al Hakam] gi|165869563|ref|ZP_02214222.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0488] gi|167633408|ref|ZP_02391733.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0442] gi|167638766|ref|ZP_02397041.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0193] gi|170686249|ref|ZP_02877471.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0465] gi|170706530|ref|ZP_02896990.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0389] gi|177650578|ref|ZP_02933545.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0174] gi|190566254|ref|ZP_03019172.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis Tsiankovskii-I] gi|196033476|ref|ZP_03100888.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W] gi|218902883|ref|YP_002450717.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH820] gi|225863627|ref|YP_002749005.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB102] gi|227815458|ref|YP_002815467.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. CDC 684] gi|228914347|ref|ZP_04077962.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926805|ref|ZP_04089873.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933053|ref|ZP_04095916.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229183961|ref|ZP_04311176.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1] gi|229602417|ref|YP_002866162.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0248] gi|254683271|ref|ZP_05147132.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. CNEVA-9066] gi|254723854|ref|ZP_05185640.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. A1055] gi|254734624|ref|ZP_05192336.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Western North America USA6153] gi|254741033|ref|ZP_05198721.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Kruger B] gi|254755276|ref|ZP_05207310.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Vollum] gi|254759812|ref|ZP_05211836.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Australia 94] gi|291612214|ref|YP_003541028.1| flagellar biosynthetic protein FlhB [Bacillus anthracis str. 'Ames Ancestor'] gi|301053307|ref|YP_003791518.1| flagellar biosynthesis protein [Bacillus anthracis CI] gi|30256001|gb|AAP25636.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. Ames] gi|47502154|gb|AAT30830.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. 'Ames Ancestor'] gi|49178534|gb|AAT53910.1| flagellar biosynthetic protein FlhB, putative [Bacillus anthracis str. Sterne] gi|49332486|gb|AAT63132.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977163|gb|AAU18713.1| flagellar biosynthetic protein [Bacillus cereus E33L] gi|118416426|gb|ABK84845.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al Hakam] gi|164715003|gb|EDR20521.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0488] gi|167513230|gb|EDR88601.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0193] gi|167531446|gb|EDR94124.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0442] gi|170128628|gb|EDS97495.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0389] gi|170669946|gb|EDT20687.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0465] gi|172083722|gb|EDT68782.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0174] gi|190562389|gb|EDV16356.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis Tsiankovskii-I] gi|195993910|gb|EDX57866.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W] gi|218539660|gb|ACK92058.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH820] gi|225789484|gb|ACO29701.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB102] gi|227006512|gb|ACP16255.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. CDC 684] gi|228599486|gb|EEK57091.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1] gi|228826654|gb|EEM72425.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832918|gb|EEM78487.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845341|gb|EEM90377.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266825|gb|ACQ48462.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0248] gi|300375476|gb|ADK04380.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis str. CI] Length = 348 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +++ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|119775419|ref|YP_928159.1| flagellar biosynthesis protein FlhB [Shewanella amazonensis SB2B] gi|119767919|gb|ABM00490.1| flagellar biosynthetic protein FlhB [Shewanella amazonensis SB2B] Length = 377 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 177/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END +TE P+ +++E A +G S+E + +LA + L P + Sbjct: 1 MAENDTSQERTEEPTGRRLEQAREKGQVARSKELGTAAVLLAAAVGFLML-GPSLGKAMH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + ++ ++ D + ++ + ++ V+ +L+ ++ + + Sbjct: 60 NVMTMTMVQSREQVFDTNSMLNIWIPIAKELGLPVLGLVLVLAALAFAGNIVLGGIIFSS 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N V P ++S G KR++ + L+ K K +V + L YF + ISA Sbjct: 120 NGVLPKASKMSPLAGFKRMFGLQALMELGKGLAKFSVV-AVAAYFLLSFYFPEIIQISAE 178 Query: 181 --PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P ++ +HA + + +++ + + V+D+ + +LKM+KQE+KDE K + G Sbjct: 179 HLPSNV-FHALDLLTWMFLLLCSSMLIIAVIDVPFQIWNHKKQLKMTKQEVKDEYKDTEG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 P +K R + + R +MM +A +I+ NP H+A+AL+Y + AP ++AKG + Sbjct: 238 KPEVKGRIRQMQREIAMRRMMAEVPKADVIVVNPEHFAVALKYDAKRSPAPFVLAKGVDA 297 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A K+R+IA E++I I P LAR+++ +N +P + AVAQ++ ++ Sbjct: 298 VAFKIREIAREYDIAIVSAPPLARAIYHTTKLNQQVPEGLFTAVAQVLAYVFQ 350 >gi|307718617|ref|YP_003874149.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM 6192] gi|306532342|gb|ADN01876.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM 6192] Length = 387 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 10/348 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ KI A EG + E +L LI L S ++ S + Sbjct: 34 EGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTFFS 93 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 S + + +H +L +P ++ + G+ ++Q + + + P Sbjct: 94 SISS---PEPTHTGRFFVLFLQFFLKLTLPFFVVALCAGVAGNVLQVGFLFTVKPITPDL 150 Query: 128 KRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--H 182 +R+ + KR+ +S L N K+ +K+ +G + +++ +++ + P Sbjct: 151 QRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRV-PLLQ 209 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + R + ++F+A ++++D + Q LKMS++E+K+E K G+P++ Sbjct: 210 GIRFLGALVFRILFEATVVFLA-ISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R + R + M+ A ++ITNPTHYA+AL Y + +AP +VAKG + +A + Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 MR IA EH +P+ E LAR+L+++V + IP +Y VA ++ K+Y Sbjct: 329 MRAIAREHGVPLVENRPLARALYQEVEVGDTIPEQYYAVVATILAKVY 376 >gi|217972629|ref|YP_002357380.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS223] gi|217497764|gb|ACK45957.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS223] Length = 376 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 17/346 (4%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 P+ +++E A +G S+E + ++ AC Y+L P + + + + + + + Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127 ++ D + + AS + P + ++ + ++ I + + +N + P Sbjct: 70 AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185 ++S G+KR++ + LV K K +V + L+ YF + +S++ P ++ Sbjct: 126 SKMSPAAGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 YHA + + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGR 243 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + R + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+ Sbjct: 244 VRQMQRELAQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA EHNI I P LAR+++ ++ IP + AVAQ++ ++ Sbjct: 304 IAREHNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349 >gi|294013056|ref|YP_003546516.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S] gi|292676386|dbj|BAI97904.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S] Length = 392 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 180/362 (49%), Gaps = 24/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ KTE P++KK++DA +G+ SR+ + ++A + ++ P + S Sbjct: 1 MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVT-GPSMVESLS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSL-SASRLVIPGLLLFMMFGI--GSYLIQRIPV 117 D+ L A + + EDI + +L S L + G++L + G ++ + Sbjct: 60 DM---LIEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPAMLGSLG- 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTM 173 P +++ G+KR++ + L+ +KS K+ L+G I I+ LTE Sbjct: 116 FRPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSVAKVSLLGAIGVWMISDRLTE----- 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEI 229 I S L A + + IM L +A + +D+ Q +L MSKQEI Sbjct: 171 ---IVGLGKSGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEI 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 KDE K+S G+P +K + + +A + A++IITNPTH+A+ALRY ++ AP Sbjct: 228 KDEHKESEGSPELKGHIRRKQYEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V+VA+G + IA +R++A ++ + + + P LAR+++ + Y AVA ++ + Sbjct: 288 VVVARGCDAIAAAIRELADQNGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFV 347 Query: 350 YH 351 + Sbjct: 348 FR 349 >gi|229102368|ref|ZP_04233076.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28] gi|228681015|gb|EEL35184.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28] Length = 348 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 178/344 (51%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASF 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|77165624|ref|YP_344149.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC 19707] gi|254433995|ref|ZP_05047503.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27] gi|76883938|gb|ABA58619.1| Flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC 19707] gi|207090328|gb|EDZ67599.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27] Length = 377 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 181/360 (50%), Gaps = 30/360 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ A +TE P+ K+ E+A +G P SRE S +L+ + L+ P + + Sbjct: 1 MADSSA-QERTEQPTPKRQEEARKKGQVPRSRELSTTVLLLSSALGLVLIGEPLLQGLAD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--------GLLLFMMFGIGSYLI 112 + L + E + I+ + A +++ P L ++ G S+ Sbjct: 60 LMRQGLQLERAQIFEPKAAILQFQQGVG-EAVKIITPFLALTLIAALAAPLLMGGWSFSA 118 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q + +++++ +G+KRI+ + +K+ +K +L+ + + + Sbjct: 119 QSLGF--------KWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVGCLLF---WLF 167 Query: 173 MLDFISANPHSILYHAFFTVRKV---LIMILLFIATLTVLDI---GWSYHQWYSKLKMSK 226 D I+ + F + L+ + +A + V+D GW++ + +LKM++ Sbjct: 168 SPDLIALGRQPFVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQGWNHTR---QLKMTR 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+K+E K++ GNP +K R + + R +MM A +A +++ NPTHYA+AL Y Q + Sbjct: 225 QEVKEEHKETDGNPELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQ 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG + +A K+R +A +N+P+ P+L+R+++ ++ IP Y+AVAQ++ Sbjct: 285 GAPRVVAKGVDQVAIKIRTVAAGNNVPVLSAPALSRAIYHSTKLDQEIPAGLYRAVAQVL 344 >gi|160876164|ref|YP_001555480.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS195] gi|160861686|gb|ABX50220.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS195] gi|315268360|gb|ADT95213.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS678] Length = 376 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 17/346 (4%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 P+ +++E A +G S+E + ++ AC Y+L P + + + + + + + Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127 ++ D + + AS + P + ++ + ++ I + + +N + P Sbjct: 70 AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185 ++S G+KR++ + LV K K +V + L+ YF + +S++ P ++ Sbjct: 126 SKMSPAAGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 YHA + + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGR 243 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + R + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+ Sbjct: 244 VRQMQRELAQRRMMTEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA EHNI I P LAR+++ ++ IP + AVAQ++ ++ Sbjct: 304 IAREHNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349 >gi|74101643|gb|AAZ99733.1| FlhBL [Aeromonas hydrophila] Length = 378 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 179/349 (51%), Gaps = 14/349 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+N A D KTE SS+K+ A EG S+E S +L + + + P + Sbjct: 1 MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQWMV-PSFGHFFA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + D ++ LS +++P + + ++ VL Sbjct: 59 ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + PS ++++ +G+KR++S ++L+ +KS +KI+L+G+ + + L + ++ Sbjct: 119 KKLLPSAEKLNPLKGLKRMFSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238 P + + A + + I++ + VLD+ Y +W +L+M+KQE+KDE K S G Sbjct: 179 PQAAMEQALRILSQAFILLGSVQMLIAVLDV--PYQRWSLNKQLRMTKQEVKDEHKNSEG 236 Query: 239 NPIIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 P IK + Q +AR+RI ++ +A +II NPTHYA+A++Y +AP ++AK Sbjct: 237 RPEIKAKIRQVQGMLARARIEQRV----PQADVIIVNPTHYAVAIKYDPERANAPYVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 G + +A+++R++A +H+ + P L R+++ ++ +P Y AVA Sbjct: 293 GVDGMAERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVA 341 >gi|148976240|ref|ZP_01812964.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3] gi|145964334|gb|EDK29589.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3] Length = 379 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 101/366 (27%), Positives = 187/366 (51%), Gaps = 41/366 (11%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ +K+E PS K+ A EG P ++E SSI LI ++ ++ + + Sbjct: 1 MSDHQDSGDKSEQPSQHKLTKARREGQVPRAKE--FVSSI--TLISVVAYYVLNVDMIKQ 56 Query: 61 DLHVLLASATQRKLEDISH---IVFLLTHLSLSASRLVIPGLLLFMMFG--IGSYLIQRI 115 L + + +S IV L+ S L P LL++ M +GS L+ Sbjct: 57 SFIELFLVSFHFDSQTVSQPMAIVELVGTALFSMITLFFP-LLIYQMIAAIVGSTLLGGW 115 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + + + + P ++++S +G+KRI+S ++V K+ +K+ L T++ Y+ + Sbjct: 116 -IFSPSLLIPKWEKISPLKGLKRIFSSQSIVELFKNVIKVSLFFTLL-------YWVISS 167 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTV---------------LDIGWSYHQWYS 220 +IS + + H F TV +L +AT+T+ D + H++ Sbjct: 168 YISVITNLVSAH-FDTV-------VLSVATITIEYLGYLLLIVLLFGLFDFPYQRHEFTK 219 Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 ++KM+KQE+KDE K+ G P +K R + I + E +A++++TNPT YA+AL Sbjct: 220 QMKMTKQEVKDEHKEQEGRPEVKARIRQIQTQNAKRSANERVPKASVVLTNPTRYAIALI 279 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y ++ +AP +VAKGQ+ +A +R++A +H + I E P+L R+++ I+ +P + Sbjct: 280 YDLSQAEAPFVVAKGQDDVALYIRELAAKHEVEIVESPALTRAIYNTTQIDQMVPNQLFI 339 Query: 341 AVAQLI 346 A+A ++ Sbjct: 340 AIAHIL 345 >gi|310820310|ref|YP_003952668.1| type III secretion protein hrpy/hrcu family protein [Stigmatella aurantiaca DW4/3-1] gi|309393382|gb|ADO70841.1| Type III secretion protein HrpY/HrcU family protein [Stigmatella aurantiaca DW4/3-1] Length = 353 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 175/361 (48%), Gaps = 32/361 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIY-SVTSDLHVL 65 D KTE PS KK++DA +G S++ + ++L+ + G++ ++ +L L Sbjct: 3 DEKTEEPSQKKLDDARKKGQVWKSKD------LTGVFVFLVGLGAVKGMWDTIVEELKTL 56 Query: 66 -------------LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 L+ AT + H V LT + A VI GL+ F+ G Sbjct: 57 FLFTFQYISQPEELSRATSNAMSMAVHTVLFLTA-PIVAGGAVIAGLVEFLQVG------ 109 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 + ++ + P ++++ +GIK I+S +V +K+ VKI + ++ + + Sbjct: 110 ---ALFTMDPLIPKLEKLNPIQGIKNIFSKKTVVEMIKNLVKISVAAYVVFGVVRDMLDM 166 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 ++ + + +L V +V + L ++ DI W + ++ MSK ++K E Sbjct: 167 LVQTVRMDTSGLLAVMGEMVYRVCTRVALVFLLFSIFDIWWQRKAFMKEMMMSKDDVKKE 226 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K+S G+P K +K + + + MEA A +I+TNP H A+AL+Y + ++ AP ++ Sbjct: 227 YKESEGDPHHKAHRKQMHQEIMEGAQMEAVKDADVIVTNPDHVAVALQYDRDKDAAPRVL 286 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG + A++++ IA E ++P LA +L + V + IP Y AVA+++ +Y Sbjct: 287 AKGIDFKAERIKAIARESDVPTLRNVPLAHALLR-VDVGQDIPEELYDAVAEVLNFVYGL 345 Query: 353 K 353 K Sbjct: 346 K 346 >gi|317180535|dbj|BAJ58321.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F32] Length = 358 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E I I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLIIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|32471372|ref|NP_864365.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1] gi|32443213|emb|CAD72044.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1] gi|327537626|gb|EGF24338.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica WH47] Length = 360 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 189/367 (51%), Gaps = 30/367 (8%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ +K + S +K A +G S++ + + +LA + L Y++ ++ Sbjct: 2 SDSGGDKKHSASERKRRQAREKGQIAKSQDLTSATLLLAAIGAL--------YAIGGNMA 53 Query: 64 VLLASATQRKL----------EDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLI 112 L+ ++ L +D + + ++ L+++A +P ++L + G+ + Sbjct: 54 AYLSGGIEQALGETKLAPMTNQDATQYMLQISQRLAMAA----VPMMILMFIGGVLINVF 109 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q +L+ + + P +S G KRI S+ ++ + K+ ++G I ++L ++ Sbjct: 110 QSGLLLSTDKLMPKLSNISPMSGAKRILSLQGVMRLVFGMFKVGIIGGIAYLALRAHHGD 169 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK--LKMSKQEIK 230 ++ S + + F T+ V + I + + L +L+ + Y W ++ L M+ QE++ Sbjct: 170 VISMASLSVPQLAKSMFDTLFGVSLWIGVGLFVLALLE--YVYQWWKTEQDLMMTDQEVR 227 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE+K + +P + R++ +AR ++ +A ++ +NPT A+A++Y AP+ Sbjct: 228 DEMKDTEADPQVAARRRQVARQLAMGQLGSEVPKADVVASNPTELAIAIKYDPLTMPAPI 287 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IY 347 +VAKG +IA+++R++A E+ IP+ E LA++L+K V + +P Y+AVA++ +Y Sbjct: 288 VVAKGAGMIAQRIRRLALENGIPVVERKELAQALYKLVDVGQEVPAEQYQAVAEILRYVY 347 Query: 348 KIYHKKI 354 ++ KK+ Sbjct: 348 QMQGKKV 354 >gi|91223202|ref|ZP_01258468.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01] gi|269967109|ref|ZP_06181176.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B] gi|91192015|gb|EAS78278.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01] gi|269828246|gb|EEZ82513.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B] Length = 375 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 180/357 (50%), Gaps = 24/357 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58 MS+ + D KTE S +K++ A EG P ++E F++ + L L+F+S I+ Sbjct: 1 MSDQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVALYFYSQLNSIWES 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 S + T+ LE+ +V L +++P + ++ GS L+ + Sbjct: 57 MSGIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +V P +++ GIKRI+S ++V +KS K+ ++ I+ L +N+ L + Sbjct: 117 RPANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYL-DNHLQPLLGMQ 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSKQEI 229 P L F L+M +LF + V+DI + + +L+M+KQE+ Sbjct: 176 NLP---LSQGF-----SLVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQEL 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E K + G P +K R + I + R K+ + A +IITNPTHYA+AL+Y + +DAP Sbjct: 228 KEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +VAKG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 288 FVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344 >gi|228907402|ref|ZP_04071260.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200] gi|228938882|ref|ZP_04101482.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964753|ref|ZP_04125860.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228971763|ref|ZP_04132384.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978372|ref|ZP_04138749.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407] gi|228781389|gb|EEM29590.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407] gi|228787853|gb|EEM35811.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795003|gb|EEM42502.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228820731|gb|EEM66756.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228852263|gb|EEM97059.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200] gi|326939382|gb|AEA15278.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar chinensis CT-43] Length = 348 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 179/341 (52%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|256833222|ref|YP_003161949.1| type III secretion exporter [Jonesia denitrificans DSM 20603] gi|256686753|gb|ACV09646.1| type III secretion exporter [Jonesia denitrificans DSM 20603] Length = 380 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 106/363 (29%), Positives = 186/363 (51%), Gaps = 45/363 (12%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +TE + K+++D +G+ S++ S ++ I A L F F + D Sbjct: 3 DDQSQERTEEATPKRMKDVRKDGSLQKSQDLSAWAGIGAGTAVLPFVFG-NVEKHIED-- 59 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--LLFMMF-------GIGSYLIQR 114 VL+ +T D +V +L +L+ ++P L LL ++F G+G Y I Sbjct: 60 VLMNISTIASTPDPLLVVPMLGD-ALAG---ILPALAPLLAVVFIAAILANGVGGYYIAT 115 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 +KP+FK+ +L +G+K+ + + L +K+ +K +++G ++ Y + Sbjct: 116 ------KKLKPTFKQFNLIKGMKQKFGMQALWQGVKALLKTVVIGAVL-------YLLIQ 162 Query: 175 DFISANPHSILYHAFFTVRKVL------IMILLFIA-----TLTVLDIGWSYHQWYSKLK 223 I I T+R VL M L++ A L +LD+ + K K Sbjct: 163 GMIPV----IQQSGALTMRAVLGYASEKFMQLMWTAVAAGIALAILDVVVVMKRNRKKTK 218 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M+K+EIKDE K + G+P++K +S + R++M+ + + A +++ NPTH A+AL Y+ Sbjct: 219 MTKKEIKDENKNTEGDPLLKGAIRSRQLAMSRNRMIASVADADVVVVNPTHVAVALTYVA 278 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E AP LVAKG+NL+A+++R+ A H++P+ + LAR+L I IPP + AVA Sbjct: 279 GEG-APKLVAKGKNLVAQRIREEAEAHDVPLVRDIPLARALNAHCEIGHPIPPALFTAVA 337 Query: 344 QLI 346 Q++ Sbjct: 338 QVL 340 >gi|229166624|ref|ZP_04294376.1| Flagellar biosynthetic protein [Bacillus cereus AH621] gi|228616878|gb|EEK73951.1| Flagellar biosynthetic protein [Bacillus cereus AH621] Length = 348 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 178/341 (52%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|302338096|ref|YP_003803302.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM 11293] gi|301635281|gb|ADK80708.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM 11293] Length = 379 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 182/351 (51%), Gaps = 16/351 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLLFFFSPGIYSVTSD-LHV 64 + +TE P+ +KI A EG S E F+S L L I L +P ++ + L Sbjct: 30 EGRTEDPTEQKIRKAREEGKVAKSSE---FTSSLVLLFPIVALGILAPRMFGTMEEMLRY 86 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L+ ++ L + F + L A + + +FG +IQ + + Sbjct: 87 YLSLLSEADLTGEQIVAFFRYFIRLVAPVASV--AVAAALFG---NIIQVGFLFTSKPIT 141 Query: 125 PSFKRVSLREG--IKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P F ++ R G I+R + S L N MKS +K++++G I I++ N F++A P Sbjct: 142 PDFSKIVPRFGKFIQRSFLSGEALFNLMKSILKVLIIGIIAYINIKNNLDIFAFFVNA-P 200 Query: 182 HSILYHAFFTVR-KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + +V ++L+ + + L++ D + Q LKM+KQEIK+E K G+P Sbjct: 201 FEVAFSTIGSVAFRILVESSIALLALSLPDYLFQRRQHRESLKMTKQEIKEERKTMEGDP 260 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+R + R + M+ A +IITNPTH+A+ + + + AP+++AKGQ+ +A Sbjct: 261 LIKSRLRERMRDVLNRNMIRKVPEADVIITNPTHFAVGMEWERERMVAPMVIAKGQDNMA 320 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++++ IA EH++PI E LAR+L+ +V + IP +Y+ +A ++ ++Y Sbjct: 321 QRIKAIAREHDVPIVENKPLARALYAEVEVGEVIPERYYEVMATILAEVYR 371 >gi|120598263|ref|YP_962837.1| flagellar biosynthesis protein FlhB [Shewanella sp. W3-18-1] gi|120558356|gb|ABM24283.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1] gi|319427058|gb|ADV55132.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens 200] Length = 376 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 172/344 (50%), Gaps = 13/344 (3%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E +++L + PGI + S + + + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGT-AAVLLSAATGFYMLGPGIATALSHVFERVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSFKR 129 + D + + L A + P L + ++ + ++ I + + +N + P + Sbjct: 72 IYDTNQ---MFNVWGLVAGEIAWPMLKIMLLIVVVAF-IGNVSLGGMNFSTQAMMPKASK 127 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187 +S G KR++ + LV K K +V L YF + +S++ P ++ +H Sbjct: 128 MSPLAGFKRMFGVQALVELTKGIAKFSVV-AFSAYFLLSYYFNDILLLSSDHLPGNV-HH 185 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A + + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + Sbjct: 186 ALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVA 305 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E+NI I P LAR+++ ++ IP + AVAQ++ ++ Sbjct: 306 REYNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQ 349 >gi|254228807|ref|ZP_04922230.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262396474|ref|YP_003288327.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] gi|151938754|gb|EDN57589.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262340068|gb|ACY53862.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] Length = 375 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 180/357 (50%), Gaps = 24/357 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58 MS+ + D KTE S +K++ A EG P ++E F++ + L L+F+S I+ Sbjct: 1 MSDQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVALYFYSQLNSIWES 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 S + T+ LE+ +V L +++P + ++ GS L+ + Sbjct: 57 MSGIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +V P +++ GIKRI+S ++V +KS K+ ++ I+ L +N+ L + Sbjct: 117 RPANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYL-DNHLQPLLGMQ 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSKQEI 229 P L F L+M +LF + V+DI + + +L+M+KQE+ Sbjct: 176 NLP---LSQGF-----SLVMSILFEGLLLMGFALLLFGVVDIPYQRWEHLKELRMTKQEL 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E K + G P +K R + I + R K+ + A +IITNPTHYA+AL+Y + +DAP Sbjct: 228 KEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +VAKG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 288 FVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344 >gi|332526006|ref|ZP_08402146.1| Translocation protein in type III secretion [Rubrivivax benzoatilyticus JA2] gi|332109851|gb|EGJ10479.1| Translocation protein in type III secretion [Rubrivivax benzoatilyticus JA2] Length = 387 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 167/354 (47%), Gaps = 20/354 (5%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +ND D KTE P+ KK++DA +G SR+ SS + L +L Y+ Sbjct: 3 DKNDGGD-KTEKPTPKKLQDARRKGQVSKSRD---LSSTVPLLAWLAVVVLGSAYAGREL 58 Query: 62 LHVLLASATQ--RKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 + A+ R E + + + T + + L L + + F +Q Sbjct: 59 GALADAALASIGRPFEVAAPALGELAWRTTLWLSALALLPAAALGVLVEF------LQAG 112 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITISLTENYFT 172 PV + +KP + ++ EGIKR++ ++NLV KS K +L +G ++ + + Sbjct: 113 PVFSAERLKPKAEHLNPVEGIKRMFGLDNLVELAKSLAKCVLLLAIGALVLRGVLADSAR 172 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +L A ++ R+ L L+ + LD+ W H + KL+MS ++IK E Sbjct: 173 LLQ-APAGVGAVGTLLLEVTRQALTWTLVAFVLVAALDMAWQRHSFTKKLRMSLRDIKQE 231 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K+S G+P ++ +++ + + +A +A +++ NPTH A+A+ Y + P + Sbjct: 232 TKESEGDPQVRQQRRQAHQEWSQRNAQQAARQANVLVVNPTHVAIAIDYDRDTCPVPTIS 291 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AKG++ +A+ MR+ A E +PI LAR L + + +P + VA++I Sbjct: 292 AKGEDHVARAMREAAEEAGVPIVRNVPLARDLLGRGEVGQLVPADLFDVVAEVI 345 >gi|330447934|ref|ZP_08311582.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492125|dbj|GAA06079.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 375 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 187/357 (52%), Gaps = 24/357 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-IYSVT 59 MS++ A D KTE + +KI A +G P +++ + + +A +++ F+F I+ V Sbjct: 1 MSQSSAQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVF--FYFQIDVIWQVL 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRIP 116 + + L + + +D+ + L S + +L++P L + I S L+ Sbjct: 58 NSVFQLNMTISH---DDLRSPWLAIEALGTSLAIIIQLLLPLFALIFITAIASSLLLGGW 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + V P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L Sbjct: 115 LFYPAGVLPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDVNLSRLLGM 174 Query: 177 IS-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + + +IL+H +L+ + LFI L +DI + + +LKM+KQE+ Sbjct: 175 QNLPLKQGVSLIMTILFHGI-----LLMGVALFIFGL--IDIPYQKWEHAKELKMTKQEL 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E K + GNP IK R + I + R K+ +A +A ++I NPTHYA+A++Y T ++AP Sbjct: 228 KEEFKTNEGNPEIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +VAKG + A ++ IA +H++ I P L R+++ I AIP Y AVA ++ Sbjct: 288 FVVAKGIDEAAMHIQTIAKQHDVEILRSPPLTRAIYHSTQIEQAIPSQLYVAVAHIL 344 >gi|308063444|gb|ADO05331.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Sat464] Length = 358 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E + SI I+ + FS Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHA 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + +KL L+ L++P L++ ++ S ++Q + Sbjct: 62 VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKVIEPKFSKINPINGTKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFILAFIDLAIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMIKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336 >gi|315186370|gb|EFU20130.1| flagellar biosynthetic protein FlhB [Spirochaeta thermophila DSM 6578] Length = 387 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 170/348 (48%), Gaps = 10/348 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ KI A EG + E +L LI L S ++ S + Sbjct: 34 EGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTFFS 93 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 S + + +H +L +P ++ + G+ ++Q + + + P Sbjct: 94 SISS---PEPTHTGRFFVLFLQFFLKLTLPFFVVALFAGVAGNVLQVGFLFTVKPITPDL 150 Query: 128 KRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--H 182 +R+ + KR+ +S L N K+ +K+ +G + +++ +++ + P Sbjct: 151 QRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRV-PLLQ 209 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + R + ++F+A ++++D + Q LKMS++E+K+E K G+P++ Sbjct: 210 GIRFLGALVFRILFEATVVFLA-ISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R + R + M+ A ++ITNPTHYA+AL Y + +AP +VAKG + +A + Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 MR IA EH +P+ E LAR+L++ V + IP +Y VA ++ K+Y Sbjct: 329 MRAIAREHGVPLVENRPLARALYQDVEVGDTIPEQYYAVVATILAKVY 376 >gi|83814498|ref|YP_446683.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855] gi|294508619|ref|YP_003572678.1| flagellar biosynthetic protein flhB [Salinibacter ruber M8] gi|83755892|gb|ABC44005.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855] gi|294344948|emb|CBH25726.1| Flagellar biosynthetic protein flhB [Salinibacter ruber M8] Length = 353 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/360 (27%), Positives = 183/360 (50%), Gaps = 17/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE K P+ +++E A +GN + R S + L+ + FS G S Sbjct: 1 MSETQ---EKQYDPTPRRLEKAREKGN--VLRATEPVS--VGLLLTAMAVFSVGGASAFQ 53 Query: 61 DLHVLLAS---ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L + A + R + + L+ + + ++ P ++ ++ +G ++Q Sbjct: 54 SLQDMAARIFLRSARMSLTPASLQRLVAEIGAQVAGMLAPLFIVLIVAAVGLNMVQSGWN 113 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ ++P RV+ EG+K+I+S F K+ +KI +VG I ++ M+ Sbjct: 114 VSFTPIQPQLSRVNPLEGLKQIFSSKGAFGFAKTLLKIGVVGPIAYFAMRPLIPEMVQVY 173 Query: 178 SANPHSILYHA---FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + ++L A FF + ++M L+ IA L D + ++Y LKMSK+E++DE K Sbjct: 174 TLPLPALLNQAADWFFALMWRVLMGLVVIAAL---DYAFERWKYYEDLKMSKKEMEDEQK 230 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMME-ATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 ++ G+P + +++ A+ M+ A ++ ++TNPTHYA+ALRY E AP ++ Sbjct: 231 ETEGDPEFEEKRREKAKELAEQPRMDHAVMKSDAVVTNPTHYAIALRYDPDEAPAPRVLL 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG A +++++A E ++P FE SLA +L++ VP IP Y AVA ++ ++Y ++ Sbjct: 291 KGVRKRALRIKELAAEFDVPTFENRSLAHALYENVPEEEEIPEELYPAVAAILAEVYEQR 350 >gi|116626501|ref|YP_828657.1| type III secretion exporter [Candidatus Solibacter usitatus Ellin6076] gi|116229663|gb|ABJ88372.1| type III secretion exporter [Candidatus Solibacter usitatus Ellin6076] Length = 354 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 95/143 (66%) Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 +D+ + S+L+MSKQEI++E+K GNP +K R + + R R+R +MM+ AT Sbjct: 203 CVDLARQLQRHKSELRMSKQEIREEMKDVEGNPQMKARIRRLQRDRVRKQMMKDVPTATA 262 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 ++ NPTHYA+A+RY AP++VAKG N +A ++R+ A EH +PI E P LA++L+K Sbjct: 263 VVVNPTHYAVAIRYQMDGMAAPMVVAKGMNHLALRIRQKATEHQVPIIENPPLAQALYKS 322 Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350 V + IPP Y+AVA+++ I+ Sbjct: 323 VEVGQEIPPHLYRAVAEILAYIF 345 >gi|218193976|gb|EEC76403.1| hypothetical protein OsI_14046 [Oryza sativa Indica Group] Length = 324 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 118/197 (59%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + ++P F +++ GI +++S +K+ +K +L+G+ L ++ M+ Sbjct: 56 VFSGKSLQPKFSKLNPLPGIAKMFSAQTGAELLKAILKSVLMGSSAGFFLWYHWPEMMRL 115 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 IS +P + + +A V ++++L I + D+ + + + KL+MS+Q+I+DE KQ Sbjct: 116 ISESPLTAMSNALNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQM 175 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R + + R+ R +MME +A +I+TNPTHY++ALRY + + AP +VAKG Sbjct: 176 EGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGA 235 Query: 297 NLIAKKMRKIAYEHNIP 313 LIA ++R+I E+ +P Sbjct: 236 GLIALRIREIGTENRVP 252 >gi|256831232|ref|YP_003159960.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM 4028] gi|256580408|gb|ACU91544.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM 4028] Length = 355 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/362 (29%), Positives = 184/362 (50%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D ++TE + K+ A +GN P S+E ++L L+ L + + + Sbjct: 1 MAQHDP--SRTENATPKRRNKARGQGNVPKSQELPKPLTLLFGLLMLQLYLGTIRTEIEN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +H +L S + L S S +V+P + ++ + ++++ R+ V L Sbjct: 59 LMHWFFTEGFVFELTPAS-VYTLFRDCLYSISLMVLP---IMIVIAVAAFIVVRLQVGKL 114 Query: 121 ---NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 KP FK ++ G+K++ S V KS V I L + + ++ Sbjct: 115 WAPKVFKPQFKMFNVLSGLKKLLISKQTFVRLAKSIFMAAAVAIGPYIVLKQAFGEVIPL 174 Query: 177 ISANPHSILYHAFFTVRKVLI-----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 SI + + + + MIL+ IA L L W Y + LKM+K E+KD Sbjct: 175 FYQPAESIAAYVLKSGQTMFYYALTPMILIGIADL--LYTRWDYEE---NLKMTKSEVKD 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E KQ+ G+P IK++Q+ + + +MM+ +A ++ITNPTH A+A+RY E AP++ Sbjct: 230 ERKQAEGDPAIKSKQRQKMMAVMMRRMMQDVPKADVVITNPTHLAIAIRYNAMEAPAPMV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG +A++++ IA E+N+PI E LAR+L+K + + IP FY+AVA ++ +IY Sbjct: 290 LAKGAGAVAQRIKDIARENNVPIRENKPLARALYKVIEVGDTIPEEFYQAVAAILAQIYK 349 Query: 352 KK 353 K Sbjct: 350 TK 351 >gi|229058418|ref|ZP_04196802.1| Flagellar biosynthetic protein [Bacillus cereus AH603] gi|228719927|gb|EEL71517.1| Flagellar biosynthetic protein [Bacillus cereus AH603] Length = 348 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 178/341 (52%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|99082795|ref|YP_614949.1| flagellar biosynthesis protein FlhB [Ruegeria sp. TM1040] gi|99039075|gb|ABF65687.1| Flagellar biosynthetic protein flhB [Ruegeria sp. TM1040] Length = 363 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 169/355 (47%), Gaps = 19/355 (5%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 END D E P+ +K+ A EG+ P S + +S L LI F++ G S+ Sbjct: 3 DENDDSDKSFE-PTPEKLRKARQEGDVPKSNDLLQAASYLGLLIA---FYTAGRSSIEQL 58 Query: 62 LHVLLASATQRKL-------EDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 VL++ Q + I+ V F+ L+ + +P L+ + + Sbjct: 59 GTVLMSMIDQPDRLAPVFFGDGIAAPVAWEFISDALTSVIAWFAVPAALVIL-----AVF 113 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 Q+ V ++P R+S+ + K + + L F KSF K++L + + L+ Sbjct: 114 AQKAMVFAPKRIQPKLSRLSIIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGVYLSWRLP 173 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M+ + +P +++ + LI+ L+ + ++D + ++ K MS++++ D Sbjct: 174 EMIASVGTSPFTVVPFLVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMD 233 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E+K S G+P K ++K R + ++ A A ++I NPTHYA+AL++ + AP Sbjct: 234 EMKNSEGDPHTKGQRKQKGRQIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPEC 293 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 VAKG + +A +R+IA E+ +P+ +P AR+L+ V + I Y VA I Sbjct: 294 VAKGVDGVAAMIREIAQENGVPLHSDPPTARALYATVEVGEEIAEEHYAPVAAAI 348 >gi|322432982|ref|YP_004210231.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9] gi|321165209|gb|ADW70913.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9] Length = 367 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/348 (27%), Positives = 174/348 (50%), Gaps = 4/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A NKTE + K+ + A +G S+E +I + L + T+ + Sbjct: 2 ADSNKTEEATPKRRQKAREQGQVARSKELPSVLAIAGAIGALCMMSQSAVTHWTTFYRSM 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L +A+ LE I+F S+ R +IP L+ + + + L Q + ++ Sbjct: 62 LDTASTSDLESNGPILF---WGSVEVFRWIIPVLMSATVLSVAAGLAQGGLSIAPEAMQL 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R + + +I+S+ + N +KS + + I + N+ ++ S ++ Sbjct: 119 KFERFNPASKVGQIFSLAGVSNMLKSLLPFGAIAWIGEACIRSNWGMLIRASSFGLRQLV 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +V L + +D ++ + LKMSK+EIK+E KQ+ GNP+IK+R Sbjct: 179 TTLGGMIFEVAWKSALVLVAWAGVDYLLTWKKMEGDLKMSKEEIKEEYKQNDGNPLIKSR 238 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + R + + + A + AT+I+TNPTHYA+ALRY E AP +V+KG NL+A++++ Sbjct: 239 IRRLQRRMRKKQALAAAATATVIVTNPTHYAVALRYT-PEMAAPEVVSKGMNLLAQQIKA 297 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + E+ I I E LA++L+K V + IP Y+AVA ++ ++ + Sbjct: 298 LGAENGIMILENKPLAQALYKTVEVGEVIPSTLYQAVADILVIVFRAQ 345 >gi|312884814|ref|ZP_07744506.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367466|gb|EFP95026.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 375 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 179/353 (50%), Gaps = 16/353 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ + D KTE S++KI+ A +EG P +++ + LA LIY FS + + Sbjct: 1 MSESTSQD-KTEQASAQKIKKARSEGQIPRAKDFTAACIFLAVLIY----FSSQMSLIWE 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRIPV 117 + + +D++ + H S L IP ++ + + S LI + Sbjct: 56 KIAGTFEYNMRLTKQDLADPYQTIEHFGNSLGILIELFIPMFIVILSIAMASSLILGGWL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ P ++ +GIKRI S+ ++V +KS +K+ ++ TI+ + L + +L Sbjct: 116 FRPANLMPKMSKLDPIKGIKRIVSLRSVVELVKSALKVTVIFTILYLYLNNHLQPLLGMQ 175 Query: 178 SANPHSILYHAFFTVRKVLI--MILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEI 233 + + +L +IL+ IA L I Y +W +LKM+KQE+K+E Sbjct: 176 RLG----IEQGSIQIMNILFDGLILMGIALLVFGLIDIPYQRWEHLKELKMTKQELKEEY 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G P +K R + I + R K+ + A ++ITNPTHYA+A++Y + +DAP +VA Sbjct: 232 KNNEGRPEVKQRIRQIQQQFSRRKVDKMVPTADVVITNPTHYAVAIKYDPSISDAPFVVA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG + A ++++A ++ + I P L RS++ I AIP Y AVA ++ Sbjct: 292 KGIDETAMHIQRVARDNQVEIIHSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344 >gi|262166221|ref|ZP_06033958.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223] gi|262025937|gb|EEY44605.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223] Length = 240 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 126/219 (57%), Gaps = 8/219 (3%) Query: 139 IYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISANPHSILYHAFFTVRK 194 ++ + + V +KS +K++LV + I S + + LD N ++HA + Sbjct: 1 MFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQN----IFHALDILLN 56 Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 +++I + + +DI + Q ++LKM+KQE+KDE K + G P +K R + + R Sbjct: 57 FVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAA 116 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A K+R+IA E++I I Sbjct: 117 QRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAI 176 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 177 VPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 215 >gi|116049640|ref|YP_791555.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] gi|296389926|ref|ZP_06879401.1| translocation protein in type III secretion [Pseudomonas aeruginosa PAb1] gi|313110376|ref|ZP_07796265.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] gi|115584861|gb|ABJ10876.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] gi|310882767|gb|EFQ41361.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] Length = 349 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 181/344 (52%), Gaps = 15/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ L+ LL FS Y + +LL Sbjct: 4 EKTEQPTAKKLRDARRQGQVVKSKEI-VSSALILSLVALLMGFSD--YYLEHLGKLLLLP 60 Query: 69 AT------QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 A ++ LE I + L+ LV +++ G +L L+L+ Sbjct: 61 AEYIDLPFRQALETILENLLQELLYLLAPVLLVAALVVVLSHVGQYGFL------LSLDS 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 VKP K+++ EG K+I+SI +LV F+KS +K+ L+ ++ ++L N ++L + Sbjct: 115 VKPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLD 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + +R+++++ + + V D + HQ Y +L+MSK E+K E K+ G+P I Sbjct: 175 CVAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++ + + R+++I+ NPTH A+ +RY + E P++ K + +A + Sbjct: 235 KSKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLITLKHTDALALR 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R+IA E IP+ + LAR+L + ++ IP +A A+++ Sbjct: 295 VRRIAEEEGIPVLQRVPLARALLRDGNVDQYIPADLIQATAEVL 338 >gi|77463637|ref|YP_353141.1| flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1] gi|77388055|gb|ABA79240.1| Flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1] Length = 380 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E D KTE P+ K+ E A +G+ S+E +F+++ L L+ P + Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117 S V+ A D+ I + L + ++I GL++ + L+Q + Sbjct: 61 WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112 Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +N + SFK R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+ Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232 Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290 S G+P +K R Q +R+ R + ++ +AT I+TNPTH+A+ALRY+ E APV Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++A G+ +A + + + I P LAR+L+ I IP Y AVA ++ +Y Sbjct: 293 ILAMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 352 Query: 351 H 351 Sbjct: 353 R 353 >gi|325921925|ref|ZP_08183736.1| HrcU protein [Xanthomonas gardneri ATCC 19865] gi|325547627|gb|EGD18670.1| HrcU protein [Xanthomonas gardneri ATCC 19865] Length = 357 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 165/358 (46%), Gaps = 47/358 (13%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFF 50 D KTE P+ KK++DA +G PIS + S F L L+ + F Sbjct: 3 DEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGFD 62 Query: 51 FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 F+ + T D A+A QR L I LLT L A+ L + F+ G+ + Sbjct: 63 FT----TNTRD-----ATALQRALGRIGIQAVLLT-LPFVAACLAAGLIGTFLQTGLNA- 111 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 +L V P F ++ G K+I+S+ N ++ MK +K ++G ++ L Sbjct: 112 --------SLKPVTPKFDSLNPVNGFKKIFSLKNFIDLMKLGIKAAVIGVVLWYGLRALM 163 Query: 171 FTMLDFI-SANPH--SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMS 225 T++ + P+ I + A + + +++ + + WS W +MS Sbjct: 164 PTIIGLVYEPTPYIAQICWRALGILCALAVLVFVLVGAAD-----WSVQHWLFIRDKRMS 218 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 K E K E K+S G+P +K ++K A+ + E ++A +++ NPTHYA+AL Y Sbjct: 219 KDEQKREHKESEGDPELKGKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDG 278 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 P +VAKG + A ++R A IPI P LAR+L +V + A+P ++ VA Sbjct: 279 FGLPQVVAKGVDDGALELRAYAQNQGIPIVANPPLARAL-HEVDLGDAVPESLFETVA 335 >gi|300113616|ref|YP_003760191.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113] gi|299539553|gb|ADJ27870.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113] Length = 377 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 183/369 (49%), Gaps = 48/369 (13%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ A +TE P++K+ EDA +G P SRE S +L+ + L Sbjct: 1 MADSSA-QERTEQPTAKRQEDARKKGQVPRSRELSTTVLLLSSALGL------------- 46 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFMMFGIGSYLIQRIPV-- 117 VL+ + + L D+ + L L +++ P ++L +G+G + P Sbjct: 47 ---VLVGESLLQGLADL-----MRQGLQLERAQIFEPKAVILQFQWGVGEAVKIITPFLA 98 Query: 118 -----------------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 ++ + +++++ +G+KRI+ + +K+ +K +L+ Sbjct: 99 LTLIAALAAPLLMGGWSVSAQSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSG 158 Query: 161 IITISLTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW- 218 + + L + + L + P ++ + L+ + +A + V+D + W Sbjct: 159 VACL-LFWLFSSDLMALGRQPFVPAVFQLAHLMGWSLVGLSASLALIAVIDA--PFQSWN 215 Query: 219 -YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277 +LKM++QE+K+E K++ GNP +K R + + R +MM A +A +++ NPTHYA+ Sbjct: 216 HIRQLKMTRQEVKEEHKETDGNPELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAV 275 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL Y Q + AP +VAKG + +A K+R +A +N+P+ P+L+R+++ ++ IP Sbjct: 276 ALNYEQDKQGAPRVVAKGVDQVALKIRTVAAGNNVPVLSAPALSRAIYHSTELDQEIPAG 335 Query: 338 FYKAVAQLI 346 Y+AVAQ++ Sbjct: 336 LYRAVAQVL 344 >gi|221639480|ref|YP_002525742.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131] gi|221160261|gb|ACM01241.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131] Length = 382 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E D KTE P+ K+ E A +G+ S+E +F+++ L L+ P + Sbjct: 3 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 62 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117 S V+ A D+ I + L + ++I GL++ + L+Q + Sbjct: 63 WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 114 Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +N + SFK R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 115 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 174 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+ Sbjct: 175 LWTAAPGDAATVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 234 Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290 S G+P +K R Q +R+ R + ++ +AT I+TNPTH+A+ALRY+ E APV Sbjct: 235 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 294 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++A G+ +A + + + I P LAR+L+ I IP Y AVA ++ +Y Sbjct: 295 ILAMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 354 Query: 351 H 351 Sbjct: 355 R 355 >gi|317010987|gb|ADU84734.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SouthAfrica7] Length = 358 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 177/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E + SI I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + ++L L+ L++P L++ ++ S ++Q + Sbjct: 62 LKDFSLDFSKESVQEL---------FNQLAKDTFLLILPILIILVVVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKAIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ LKM+KQ Sbjct: 162 LFLGELNHAALLNLKGQLLWFKNKALLLISSLLFLFFVLAFIDLVIKRRQYTHSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ G+P IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGSPEIKAKIRQMMMKNAANKMMQEIPKANVVVTNPTHYAVALQF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 P++VAKG + +A +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA Sbjct: 281 VPIVVAKGTDHLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336 >gi|146293659|ref|YP_001184083.1| flagellar biosynthesis protein FlhB [Shewanella putrefaciens CN-32] gi|145565349|gb|ABP76284.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32] Length = 376 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 172/344 (50%), Gaps = 13/344 (3%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E +++L + PGI + S + + + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGT-AAVLLSAATGFYMLGPGIATALSHVFERVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSFKR 129 + D + + + A + P L + ++ + ++ I + + +N + P + Sbjct: 72 IYDTNQ---MFNVWGVVAGEIAWPMLKIMLLIVVVAF-IGNVSLGGMNFSTQAMMPKASK 127 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187 +S G KR++ + LV K K +V L YF + +S++ P ++ +H Sbjct: 128 MSPLAGFKRMFGVQALVELTKGIAKFSVV-AFSAYFLLSYYFNDILLLSSDHLPGNV-HH 185 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A + + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + Sbjct: 186 ALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVA 305 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E+NI I P LAR+++ ++ IP + AVAQ++ ++ Sbjct: 306 REYNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQ 349 >gi|259417182|ref|ZP_05741101.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B] gi|259346088|gb|EEW57902.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B] Length = 363 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 169/347 (48%), Gaps = 18/347 (5%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 K+ P+ +K+ A EG+ P S + +S L LI F++ G SV + VL++ Sbjct: 10 KSFEPTPEKLRKARLEGDVPKSNDLLQAASYLGLLIA---FYTAGGSSVEALGTVLMSMI 66 Query: 70 TQRKL-------EDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 Q + I+ V F+ L+ + ++P L+ + + Q+ V Sbjct: 67 DQPDRLAPVFFGDGIAAPVAGEFISAALTSVMAWFIVPAALVLL-----AVFAQKAMVFA 121 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P R+S+ + K + + L F KSF K++L + I L+ M+ + Sbjct: 122 PKRIEPKLSRLSVIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGIYLSWRLPEMIASVGT 181 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P+S++ + LI+ L+ + ++D + ++ K MS++++ DE+K S G+ Sbjct: 182 SPYSVVPFLVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEGD 241 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P K ++K R + ++ A A ++I NPTHYA+AL++ + AP VAKG + + Sbjct: 242 PHTKGQRKQKGREIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDGV 301 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +R+IA E+ +P+ +P AR+L+ V + I Y VA I Sbjct: 302 AAMIREIAQENGVPLHSDPPTARALYATVEVGDEIAEEHYAPVAAAI 348 >gi|120597286|ref|YP_961860.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1] gi|146294569|ref|YP_001184993.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32] gi|120557379|gb|ABM23306.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1] gi|145566259|gb|ABP77194.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32] Length = 376 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/352 (24%), Positives = 177/352 (50%), Gaps = 14/352 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57 MS+ D KTE + +K+ A EG P S++ + + +L C + L +F+ + Sbjct: 1 MSQTQQQD-KTEEATPQKLRKARKEGQVPRSKDLASAALVLGCSVMLTSNANWFATKVSG 59 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP- 116 +T ++LL A ++ ++ HL S ++ LF+M + + + +P Sbjct: 60 LTK-YNMLLTRA------ELDQPDMMVRHLGTSLVEMLTILSPLFIMVALLAAIAGALPG 112 Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + N+ + + R+ G+ RI+S +LV +KS +KI+L+ +I+ + L + ++L Sbjct: 113 GPIFNVGNANFKYSRIDPIAGVGRIFSTQSLVELLKSCLKIVLLISIMLVFLNGHLQSLL 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + + + ++ + + + + +D+ + Y +L+MS+QE+KDE Sbjct: 173 SYSHRPIDEAVRDGINLLSQGMLYLGVGLLVIAFIDVPYQYWHHKKQLRMSRQEVKDEHT 232 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 Q G P IK + + + + R + +A +++ NPTHYA+AL+Y DAP ++ K Sbjct: 233 QQEGKPEIKAKIRQLQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVLTK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G +A MR++A +H + I + P L R+++ ++ IP + A+A ++ Sbjct: 293 GTEELALYMRELAKKHGVEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVL 344 >gi|294675615|ref|YP_003576230.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB 1003] gi|294474435|gb|ADE83823.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB 1003] Length = 362 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 170/354 (48%), Gaps = 17/354 (4%) Query: 1 MSENDAPDNKTE-APSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MSE D D+ E P+ +KIE A +G+ S E + + A +I L F + S Sbjct: 1 MSEED--DSSKEFDPTPQKIEQARKQGDLVKSTEVTGAAVYAAIVITALAFGKSSLESFG 58 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + VL+ A ++ + + ++ + V P LLL + + + QR V Sbjct: 59 TWASVLIDQADSISVQLLGGGTVVAGNILGRMALTVAPWLLLPGVLVLAALAAQRAIVFA 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P R+ K+ + L F KSFVK++++ I+ N+ ML + A Sbjct: 119 PEKLMPKVNRIDPIANFKQKFGSTGLFEFAKSFVKLVVISIILG-----NF--MLRELPA 171 Query: 180 NPHSILYHAFFTVRKVLIMILLFI-------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 S + A MI+ F+ + +D W + + KM+++E+ DE Sbjct: 172 ILLSQKFEATVVAVSFPQMIVEFLLLMLLLAGVIAAIDYLWQRFDFLRRNKMTRKELTDE 231 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +KQS G+P IK +++ A +M+ ++A ++I NPTHYA+AL++ + AP+ V Sbjct: 232 MKQSEGDPHIKAQRRQKAIEIATKQMIADVAKADVVIVNPTHYAVALKWERGAKRAPLCV 291 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AKG + +A ++R++A E +PI +P AR+L+ V I I P Y+ VA I Sbjct: 292 AKGVDEVAARIREVAAEAGVPIHSDPPTARALYAAVDIGQEIHPDHYRPVAAAI 345 >gi|15596887|ref|NP_250381.1| translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] gi|107101122|ref|ZP_01365040.1| hypothetical protein PaerPA_01002154 [Pseudomonas aeruginosa PACS2] gi|218892354|ref|YP_002441221.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] gi|254234789|ref|ZP_04928112.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|254240035|ref|ZP_04933357.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|9947663|gb|AAG05079.1|AE004596_5 translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] gi|126166720|gb|EAZ52231.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|126193413|gb|EAZ57476.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|218772580|emb|CAW28363.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] Length = 349 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 181/344 (52%), Gaps = 15/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S+E + S+++ L+ LL FS Y + +LL Sbjct: 4 EKTEQPTAKKLRDARRQGQVVKSKEI-VSSALILSLVALLMGFSD--YYLEHLGKLLLLP 60 Query: 69 AT------QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 A ++ LE I + L+ LV +++ G +L L+L+ Sbjct: 61 AEYIDLPFRQALETILENLLQELLYLLAPVLLVAALVVVLSHVGQYGFL------LSLDS 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 VKP K+++ EG K+I+SI +LV F+KS +K+ L+ ++ ++L N ++L + Sbjct: 115 VKPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLD 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + +R+++++ + + V D + HQ Y +L+MSK E+K E K+ G+P I Sbjct: 175 CVAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++ + + R+++I+ NPTH A+ +RY + E P++ K + +A + Sbjct: 235 KSKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLVTLKHTDALALR 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R+IA E IP+ + LAR+L + ++ IP +A A+++ Sbjct: 295 VRRIAEEEGIPVLQRIPLARALLRDGNVDQYIPADLIQATAEVL 338 >gi|332558493|ref|ZP_08412815.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N] gi|332276205|gb|EGJ21520.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N] Length = 380 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E D KTE P+ K+ E A +G+ S+E +F+++ L L+ P + Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117 S V+ A D+ I + L + ++I GL++ + L+Q + Sbjct: 61 WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112 Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +N + SFK R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+ Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232 Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290 S G+P +K R Q +R+ R + ++ +AT I+TNPTH+A+ALRY+ E APV Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++A G+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y Sbjct: 293 ILAMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 352 Query: 351 H 351 Sbjct: 353 R 353 >gi|317486796|ref|ZP_07945612.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia 3_1_6] gi|316921959|gb|EFV43229.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia 3_1_6] Length = 346 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 172/341 (50%), Gaps = 9/341 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV---L 65 +KTE P+ K++ ++ +G+ S++ ++LA +Y++ + S+ + + + L Sbjct: 3 DKTEQPTPKRLRESREKGDVCKSQDVPSALTVLALSVYIVVMGGHLLESLLAMMELPMKL 62 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L++ + F H+++S +V P + L M + + L Q + P Sbjct: 63 LSTPYAEAAPRAAEATF---HIAVS---IVAPLVGLVMAVALVANLGQVGILFAFKGAMP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 + VS + ++++S+ NLV F+K+ +K+ ++G + + + ++ T+ ++ Sbjct: 117 KLENVSPSKWFQKVFSMKNLVEFLKNIIKVTVLGVTVWVVMRDHLPTLFAIQRGTIWTMW 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 V+ +L+M + +D + Q+ MSK E+K E K+ G+P +K + Sbjct: 177 EVLGMAVKDLLLMAAGVFCVIAAVDYLFQKWQYTKNHMMSKDEVKREYKEMEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K + + + + +A +++TNPTHYA+AL Y + PV++AKG+ +A++M + Sbjct: 237 RKQLHQEMLSQNALGNVRKAKVLVTNPTHYAVALDYEKDRTPLPVILAKGEGFLAQRMIR 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A E IPI LARSLF+ N+ IP VA+++ Sbjct: 297 VAQEEGIPIMRNVPLARSLFENGTENAYIPKDLIGPVAEVL 337 >gi|255264526|ref|ZP_05343868.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62] gi|255106861|gb|EET49535.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62] Length = 374 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 170/352 (48%), Gaps = 13/352 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D K ++KK+EDA +G P S + + +S LI + F S I + Sbjct: 15 MAEDDT--EKPHEATAKKLEDARKKGEFPKSVDLTTSASYAGMLIVMAVFGSFSIERFGA 72 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS------LSASRLVIPGLLLFMMFGIGSYLIQR 114 + L++ ++H+ FL + L + + P + + + + + QR Sbjct: 73 LMVQLISEPVA-----LAHVAFLAPGGAQAKWVILGLATQLAPWFTVPALCALVALVTQR 127 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V + P R+SL K + + L F+KSF K+ + I+++ L+ +L Sbjct: 128 AIVFAPTKLAPKISRISLLSNAKNKFGRSGLFEFLKSFSKLTIYSIILSVFLSIKLPIIL 187 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 ++ P I + ++L ++L+ + +D W + + K MS QEIKDE K Sbjct: 188 SSMTTQPRLISAQLATLIVELLSLVLVVSIIIGGVDYLWQHAEHLRKNMMSDQEIKDEHK 247 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P +K ++ ++M+ A A ++I NPTH+A+AL++ ++ P +AK Sbjct: 248 NNEGDPGMKQERRQRGYDIAMNQMLGAVEEADVVIVNPTHFAVALKWDRSRGSVPKCLAK 307 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + IA ++R+ A E IPI +P AR+L+ V I I P YKAVA I Sbjct: 308 GVDEIAARIRERAAEEAIPIHSDPPTARALYATVEIGQEIRPDHYKAVAAAI 359 >gi|118592629|ref|ZP_01550019.1| translocation protein in type III secretion [Stappia aggregata IAM 12614] gi|118434680|gb|EAV41331.1| translocation protein in type III secretion [Stappia aggregata IAM 12614] Length = 371 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 171/348 (49%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG------IYSVTSDL 62 KTE P+ KK+ DA +G S++ S+L + YL + + + + L Sbjct: 8 EKTEQPTHKKLRDARKKGQVARSQDLVTTISLLGVIAYLWLAWDYNFAKFVEMLDIVAAL 67 Query: 63 HV--LLASATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 H ASA + + DIS +V V+P L + GI Q + Sbjct: 68 HGAGFRASAFNALQAMFDISIVV-------------VLPLLGVGFALGIAGNYFQFGSIF 114 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++KP + +S +G+K+I+S+ LV F+KS +KII + ++ + + ++ + Sbjct: 115 AFENLKPKIENISPAKGLKKIFSVKQLVEFLKSLIKIIFLSVLLFFVIRDAIGPYMNAVQ 174 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + L+ L A ++ D + Q +L M+K E++ E K++ G Sbjct: 175 CGLQCLTAVTSSMLLTTLLFTALAFAIVSGFDFIFQKFQHKKELMMTKTEVQREYKETEG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK R+K +A+ + ++ T AT +I NPTH+A+ + Y P++VAKG+NL Sbjct: 235 DPLIKGRRKQLAQEMVLSDGIDRTRNATAVIVNPTHFAVVIDYKPDIAPLPLIVAKGRNL 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +R A +H +P+F LARSL+ + + + +P +++ +A+++ Sbjct: 295 HAHDLRTEAEKHGVPVFRNVLLARSLYAESDVGAFVPDEWFEVIAKIL 342 >gi|296121646|ref|YP_003629424.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM 3776] gi|296013986|gb|ADG67225.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM 3776] Length = 360 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 15/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ D KTE P+ ++ +A +GN S++ + + +L +L++ + + Sbjct: 1 MAEDESGD-KTEDPTERRRSEAREQGNVVKSQDLTAAALMLGS-AGVLWWHGRNVAEYMA 58 Query: 61 DLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L SA D + +V L HL S + V P L+L + I L+Q + + Sbjct: 59 RLMRNSLSAAPWTTFDQNDLVSLAWAHLGESGWQ-VAPLLILLALAAIAINLLQVGFLFS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P ++R++ GI+R++SI ++ + K+ L+G++ T + + L +A Sbjct: 118 PEVLQPKWERINPLSGIQRLFSITSVARLGANLAKLALLGSVATWFV----YDGLHRFAA 173 Query: 180 NPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 H L LI ++ ++A + D + + ++ LKMSKQEI+DE K+ Sbjct: 174 LAHQPLTVVAVVAGSELISLIFWMALAIFVAALADFAFQWWKYEQDLKMSKQEIRDEYKE 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P+I+ R++ R + + +++ A ++ITNPT A+A++Y AP++VAKG Sbjct: 234 MDGDPLIRMRRREAHRKLTQGRELQSVKTADVVITNPTEIAIAIKYDVATMPAPIVVAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHK 352 +A ++R++A E+ +PI E +AR+L+K + IP Y A++ +YKI + Sbjct: 294 AGELAAQIRRLAAENGVPIIERKPVARALYKLTRVGDPIPSDLYAVFAEILAYVYKITGR 353 Query: 353 K 353 K Sbjct: 354 K 354 >gi|126175115|ref|YP_001051264.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS155] gi|125998320|gb|ABN62395.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155] Length = 376 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 174/346 (50%), Gaps = 17/346 (4%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 P+ ++IE A +G S+E + ++ AC Y+L P + + + + + + + Sbjct: 13 PTGRRIEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127 ++ D + + AS + P + ++ + ++ I + + +N + P Sbjct: 70 AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185 ++S G KR++ + LV K K +V + L+ YF + +S++ P ++ Sbjct: 126 SKMSPAAGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 YHA + + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGR 243 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+ Sbjct: 244 VRQMQHELAQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA EHNI I P LAR+++ ++ IP + AVAQ++ ++ Sbjct: 304 IAREHNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349 >gi|283850714|ref|ZP_06368001.1| type III secretion exporter [Desulfovibrio sp. FW1012B] gi|283573957|gb|EFC21930.1| type III secretion exporter [Desulfovibrio sp. FW1012B] Length = 357 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 4/166 (2%) Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 +L + F V L+ +++ IA L V W Y + LKM+K EIKDE KQ+ G+P IK Sbjct: 186 LLGNGFILVLYTLVPMVI-IAVLDVWYTRWDYEE---NLKMTKDEIKDETKQAIGDPAIK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +QK ++ +M++ +A ++ITNPTH+A ALRY E+ AP+L+AKG + +A+K+ Sbjct: 242 QQQKRKMMEVMQRRMLQDVPKADVVITNPTHFACALRYNPKESPAPLLLAKGADHLAEKI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 ++IA EH IPI E LA++L+K V I IP Y+AVA ++ ++ Sbjct: 302 KEIAREHRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQL 347 >gi|229011062|ref|ZP_04168256.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048] gi|228750234|gb|EEM00066.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048] Length = 348 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 177/344 (51%), Gaps = 11/344 (3%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+ + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDQQV 233 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R +A E IP+ E LARSL+ QV + IP Y AV +++ Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337 >gi|167567948|ref|ZP_02360864.1| type III secretion system protein [Burkholderia oklahomensis EO147] gi|167573178|ref|ZP_02366052.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 352 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 93/342 (27%), Positives = 173/342 (50%), Gaps = 9/342 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS--DLHVL 65 D KTE P+ KK+ DA +G S + S +S+ A +++L+ P ++ S D + Sbjct: 3 DEKTEEPTEKKLRDARKDGQVSRSADFSDAASMTAAVLFLVAAADPLDDAMRSLVDCALT 62 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S L +++ ++ L ++L A ++P L + GIG ++Q +++ V P Sbjct: 63 FVSGDH-SLAEMTTRLYKLGGIALWA---IVPYLCAAALAGIGGSILQVGLQVSMKPVMP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 + +S +G+KRI+S ++ +K VK V ++ ++ E F ++ P L Sbjct: 119 NIGALSPADGLKRIFSPRTVIESVKMLVKAAAVFCVMWKTV-EWLFPLIAGALYQPLPEL 177 Query: 186 YHAFFTVRKVLIMILL-FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + L+M+ A + D+ + + +++MSK E+K E K G+P++K Sbjct: 178 SQISWEILTKLLMVAAGLFALVGAADMKLQHFMFMKQMRMSKDEVKREAKNDEGDPLLKG 237 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++ IAR +RA ++ NPTHYA+A+RY E+ P ++AKG + A +R Sbjct: 238 ERRRIARELAAAPPQRQVARANFVVVNPTHYAVAVRYASDEHPLPRVIAKGTDETAAALR 297 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A N+PI P +AR+LF +V + IP ++ +A ++ Sbjct: 298 RAAQNANVPIVGNPPVARALF-EVGVEEPIPEELFEIIAAIL 338 >gi|188992470|ref|YP_001904480.1| type III secretion system protein HrcU [Xanthomonas campestris pv. campestris str. B100] gi|167734230|emb|CAP52438.1| type III secretion system protein [Xanthomonas campestris pv. campestris] Length = 357 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 165/338 (48%), Gaps = 7/338 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + + Sbjct: 3 DEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGFD 62 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 AT + D + + L + + L +P + + G+ +Q +L V P F Sbjct: 63 FATNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPKF 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ G+K+++S+ +L+N +K +K ++G ++ L T++ P I Sbjct: 121 DSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQI 180 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + + +L + D WS W +MSK E K E K+S G+P +K + Sbjct: 181 GWRALGILCALAVLVFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGK 238 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R Sbjct: 239 RKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRA 298 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 A+ IPI P LAR+L +V + A+P ++ VA Sbjct: 299 YAHNQGIPIVANPPLARALH-EVELGEAVPESLFETVA 335 >gi|172064924|ref|YP_001815636.1| type III secretion exporter [Burkholderia ambifaria MC40-6] gi|171997166|gb|ACB68083.1| type III secretion exporter [Burkholderia ambifaria MC40-6] Length = 352 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 23/349 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK++ EG +++ + L +A L ++ + G + + L ++ Sbjct: 3 DEKTEEPTDKKLDKVREEGQ--VAKSSDLVE--VASLGSIVLVLTAGQHYLADTLRAVVK 58 Query: 68 SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 A R+L+D+S L H+ L A L+ + ++ + Q ++L Sbjct: 59 EAIDFTHGPRELQDLS---VALVHMGLQALGLLCGIAAVALVAAFLALAPQTGLKISLKA 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TI-SLTENYFTMLDFISA 179 V P VS G +RI+S+N+ ++ +K VK ++ ++ TI S + LD Sbjct: 116 VMPKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVP 175 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSY 237 ++L+ V V++ + +FIA + D + +W K +MSK E+K E K+S Sbjct: 176 QLIAVLWSVLMHV--VVVALGVFIA-IGAFD--YKLQKWLFIRKNRMSKDEVKREHKESD 230 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K +K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + Sbjct: 231 GNPEVKGERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLD 290 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++R+ A +PI P +AR L K VP+N IP ++ VA ++ Sbjct: 291 EQALRLRQQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 338 >gi|94495442|ref|ZP_01302022.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58] gi|94424830|gb|EAT09851.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58] Length = 378 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 173/366 (47%), Gaps = 32/366 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ KTE P+ KK++DA +G+ SRE ++A I L P S+ Sbjct: 1 MAGGSEGGEKTEKPTPKKLQDAAKKGDILQSRELGTALVVMAG-IGCLAVIGP---SLID 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-RLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L +L A + + EDI L L AS L + G++L F + L Sbjct: 57 ALRDMLVEALRIRREDIVDFSPAKRGLDLLASIALPVAGVML-ATFLAAIAAPALLGSLG 115 Query: 120 L--NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTM 173 P ++++ G+KRI+ + L+ +KS K+ L+G+I I LTE Sbjct: 116 FRPGAFAPKPEKLNPLSGLKRIFGMQGLIELLKSIAKVGLLGSIGVWLIWDRLTE----- 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEI 229 I+ + + A V + I L +A + +D+ Q +L MSKQE+ Sbjct: 171 ---ITGLGKAGIAPAIADVGNIFIFTCLVMAGGLFLIAGIDVPAQIMQRAKRLGMSKQEV 227 Query: 230 KDEIKQSYGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KDE K+S G+P +K RQ + R +A + A++IITNPTH+A+ALRY + Sbjct: 228 KDEHKESEGSPELKGHIRRRQFEVLSGSTR----KAVAEASVIITNPTHFAVALRYKPGQ 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + APV+VAKG + IA +R +A H + + + P LAR+++ + Y AVA + Sbjct: 284 DAAPVVVAKGCDAIAASIRDLADTHGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATV 343 Query: 346 IYKIYH 351 + ++ Sbjct: 344 LAFVFR 349 >gi|170698356|ref|ZP_02889430.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] gi|170136695|gb|EDT04949.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] Length = 352 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 104/349 (29%), Positives = 173/349 (49%), Gaps = 23/349 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK++ EG +++ + L +A L ++ + G + + L ++ Sbjct: 3 DEKTEEPTDKKLDKVREEGQ--VAKSSDLVE--VASLGSIVLVLTAGQHYLADTLRAVVK 58 Query: 68 SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 A R+L+D+S L H+ L A L+ + ++ + Q ++L Sbjct: 59 EAIDFTHGPRELQDLS---VALVHMGLQALGLLCGIAAVALIAAFLALAPQTGLKISLKA 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGTIITI--SLTENYFTMLDFISA 179 V P VS G +RI+S+N+ ++ +K VK ILV + S + LD Sbjct: 116 VMPKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVP 175 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSY 237 ++L+ V V++ + +FIA + D + +W K +MSK E+K E K+S Sbjct: 176 QLIAVLWSVLMHV--VVVALGVFIA-IGAFD--YKLQKWLFIRKNRMSKDEVKREHKESD 230 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K +K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + Sbjct: 231 GNPEVKGERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLD 290 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++R+ A +PI P +AR L K VP+N IP ++ VA ++ Sbjct: 291 EQALRLRQQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 338 >gi|294084388|ref|YP_003551146.1| flagellar protein flhB [Candidatus Puniceispirillum marinum IMCC1322] gi|292663961|gb|ADE39062.1| Flagellar protein FlhB [Candidatus Puniceispirillum marinum IMCC1322] Length = 385 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 178/367 (48%), Gaps = 34/367 (9%) Query: 3 ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62 E+ KTE PS +K+E A +G S+EA +F+++ ++ ++ G+ SV+S Sbjct: 4 ESSDGQEKTEDPSERKLEKAREDGQVLSSKEAFVFTTLAMAVVLMM-----GLSSVSS-- 56 Query: 63 HVLLASATQRKLEDISHI----------VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 L T + ++ HI F + + + + + + LF +G Sbjct: 57 AGLTHWGTLFRWDNADHIDTLAFGKLVQSFWMIIIISTIIGVPMMIVTLFTQLAVGG--- 113 Query: 113 QRIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 +N +FK R++ G+KR++S +LV KS +K++L+ + + + Sbjct: 114 -----VNFAPKSMAFKANRINPISGLKRMFSAKSLVELGKSILKVVLLFGVAGLLIYGQL 168 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 ++L + + +L +L+ + + +D W + KLKMS+QE K Sbjct: 169 PSILRLSEGTLNGAIEKMGDVFPALLGAMLIVLFIIAAIDYSWQSYSHTKKLKMSRQEQK 228 Query: 231 DEIKQSYGNPIIKNR------QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 DE KQ+ G+P +K + ++S A S+ R + E + AT IITNPTH+A+AL+Y+ Sbjct: 229 DEHKQTEGSPEVKAKIRRMQMEQSQASSQQRESL-ENVADATAIITNPTHFAVALKYVAG 287 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E APV++A G+ IA+++ + A + I I P LAR+LF I I Y AVA Sbjct: 288 EAGAPVVLAMGKGRIAEQIIERANDSKITIMRSPLLARALFFTSDIGGEISEKLYNAVAI 347 Query: 345 LIYKIYH 351 + IY Sbjct: 348 ALAYIYR 354 >gi|28901400|ref|NP_801055.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD 2210633] gi|153835995|ref|ZP_01988662.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|260362954|ref|ZP_05775823.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|260880241|ref|ZP_05892596.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|260895358|ref|ZP_05903854.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|260901183|ref|ZP_05909578.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|28809947|dbj|BAC62888.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750749|gb|EDM61494.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|308085557|gb|EFO35252.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|308091839|gb|EFO41534.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|308109328|gb|EFO46868.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|308112104|gb|EFO49644.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|328469334|gb|EGF40280.1| flagellar biosynthetic protein [Vibrio parahaemolyticus 10329] Length = 375 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 16/353 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + D KTE S +K++ A EG P ++E F++ + + L+F+S I S+ Sbjct: 1 MSDQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFMAVALYFYS-QINSIWE 55 Query: 61 DLHVLL---ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + + S T+ LE+ +V + +++P + ++ GS ++ + Sbjct: 56 SMFGIFRYNMSLTKADLENPQQMVEQVGQSLGMIIEMLLPLFTVIIIVTFGSSMVLGGWM 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ P +++ GIKRI+S +LV +KS +K+ ++ I+ L +N+ L I Sbjct: 116 FRPANMLPKLSKLNPLSGIKRIFSTRSLVELVKSTIKVTVIFGILYGYL-DNHLQPLLGI 174 Query: 178 SANPHSILYHAFFTVRKVLI----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 P L F V +L ++ + V+DI + + +L+M+KQE+K+E Sbjct: 175 QNLP---LNQGFSMVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEF 231 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G P +K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VA Sbjct: 232 KNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVA 291 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG + A +++IA E+ + I P L RS++ I AIP Y AVA ++ Sbjct: 292 KGVDETAMHIQRIARENQVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344 >gi|220929449|ref|YP_002506358.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum H10] gi|219999777|gb|ACL76378.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum H10] Length = 381 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 116/358 (32%), Positives = 190/358 (53%), Gaps = 19/358 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK DA +G SRE + S IL I + F IYS L Sbjct: 27 GAGDKTEKATPKKKSDARKKGQVFQSREMTA-SLILIITIVAMRIFGGTIYS---QLTQY 82 Query: 66 LASATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLI---QRIPVL-NL 120 + L I F +L +L + A ++ +L ++ + + LI ++ +L + Sbjct: 83 IKKTFNEYLTVKDAIDFNILANLFIDALMVLAKTVLPLLLMALLAALIVNYAQVGILFTM 142 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII---TISLTENYFTMLDFI 177 +K R++ G KRI+S+ ++V +KS +KII+V + S TE +++D Sbjct: 143 ETLKIKGDRINPLSGFKRIFSLRSVVELLKSIIKIIIVSWVAYSYLKSKTEQVLSLMDTD 202 Query: 178 SANPHSILYHAFFTV--RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 N + A FTV R + M++L A D + + + LKM+KQE+K+E KQ Sbjct: 203 LMNVLIFICDASFTVALRICMAMVILGFA-----DYLYQRYDYEKNLKMTKQEVKEEYKQ 257 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P IK++ K R +MM+ +A ++ITNPTH+A+AL+Y ++ AP +VAKG Sbjct: 258 MEGSPEIKSKIKQKQRQMSMKRMMQDIPKADVVITNPTHFAVALKYDTEKSSAPFVVAKG 317 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 Q+ IA ++++IA ++ + I E LAR+L+ V I AIPP Y+AVA+++ +Y+ K Sbjct: 318 QDYIALRIKQIASDNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375 >gi|317121832|ref|YP_004101835.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885] gi|315591812|gb|ADU51108.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885] Length = 477 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 135/244 (55%) Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 G+ +Q + + V P ++R++ G++R+ S LV +K+ VK+ ++ ++ +L Sbjct: 172 GAGFVQTGGLFQIGLVAPRWERINPLAGLQRLVSRRALVELLKAPVKLAVLVAVLGPALV 231 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + +L ++L A V ++ L + + D + + + L+M+ Q Sbjct: 232 QAAGQLLAATGTPAEALLPAAARAVHGLMWRGALAYLVVALADYAYQWWEHQQSLRMTVQ 291 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E K + K++ G+P+++ R + R R +M++ R +++TNPTH A+ALRY Sbjct: 292 EWKQDQKEAEGDPVLRQRLRQRQRQLARRRMLQEVPRVDVVVTNPTHVAVALRYDPARMG 351 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 APV+VAKG ++A ++R +A H +P+ EEP+LAR+L+K V + IPP Y AVA+++ Sbjct: 352 APVVVAKGLGVLALRIRAVAEAHGVPVMEEPALARALYKAVEVGQEIPPALYVAVAEVLA 411 Query: 348 KIYH 351 ++ Sbjct: 412 FVWR 415 >gi|56551546|ref|YP_162385.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp. mobilis ZM4] gi|56543120|gb|AAV89274.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ZM4] Length = 380 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 191/372 (51%), Gaps = 43/372 (11%) Query: 1 MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+++D D KTEAP+ K++ + +G+ S+E + ++LA L + L +Y Sbjct: 1 MTDSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVY--- 57 Query: 60 SDLHVLLASATQ------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG------- 106 DL ++L K + S + L+T + ++P +LF++ Sbjct: 58 -DLGIMLKMGLSFDFNAFSKFDPFSVFIRLITCI-------ILPFSMLFVLMAFAAIAAP 109 Query: 107 --IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 +GS L R LN KP +R++ G R++ + L KS VK++L+G++ Sbjct: 110 AVLGS-LGFRWEALNF---KP--ERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLW 163 Query: 165 SLTENYFTMLDFISANPHSIL---YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 L + ++ + + + H F + VL+M + +A + +D+ + + Sbjct: 164 ILWQRLPVIMQLGRHDLKAAINEIGHIFLIL--VLVMSVA-LAVVAAIDVPIQIFRRNRR 220 Query: 222 LKMSKQEIKDEIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 L+MSKQEIKDE KQ+ G+P IK RQ+ IA R ++ +A +T++ITNPTH+A+AL Sbjct: 221 LRMSKQEIKDEHKQTEGSPEIKAAVRQRQIAVFRASNR--KAVQDSTVVITNPTHFAVAL 278 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 +Y E+ AP++ AKG + +A +R++A E ++P+ P LAR+++ I Y Sbjct: 279 KYKAGEDIAPIVTAKGIDELALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELY 338 Query: 340 KAVAQLIYKIYH 351 KAVA ++ I+ Sbjct: 339 KAVASILAFIFR 350 >gi|315126008|ref|YP_004068011.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913] gi|315014522|gb|ADT67860.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913] Length = 376 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 183/360 (50%), Gaps = 36/360 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIY 56 MSEN + + KTE P+ K+++ A +G S+E + L SI L + F+S + Sbjct: 1 MSENSSQE-KTEQPTEKRLKKAKEDGQVARSKELNTAILLMVSIAGLLWFANLFYSLFVN 59 Query: 57 SVTSDL---HVLLASATQRKLEDISHIVFLLTHLS----LSASRLVIPGLLLFMMFGIGS 109 + S + H ++ + + I+ +L+ L+ LS + I G L G Sbjct: 60 LMNSTMVLDHTIINNKKMMPIALSDAIMNMLSTLTPFLLLSFCAMWITGCL------PGG 113 Query: 110 YLI-QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 ++ +++ L ++ + P G+ +++ +LV +KS +KI L+ + LT+ Sbjct: 114 FVFSKKLVALKMSKLNP-------LTGLGKMFGKQSLVELLKSILKITLLAICLYTFLTK 166 Query: 169 NYFTM-----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + LD A I F + + +LLFIA V+D+ + Q K+K Sbjct: 167 LWMQLMMLQNLDIKVAIGQGI--ELLFLSLMITVTLLLFIA---VIDVPFQQKQIADKIK 221 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M+ QE+K+E K S G+P IKN+ + I + K+ E A +I+TNPTHYA+A++Y + Sbjct: 222 MTHQEVKEERKSSDGSPEIKNKIRQIQYQQSNRKIEERVPTADVIVTNPTHYAVAIKYSE 281 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 AP +VAKG + +A ++R++A +N I E P+LAR+++ ++ +P Y AVA Sbjct: 282 EAAKAPYVVAKGVDEMALRIREVARMNNKEIIEIPALARAIYFSTRVDQEVPNGLYSAVA 341 >gi|241761183|ref|ZP_04759272.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752855|ref|YP_003225748.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241374802|gb|EER64263.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552218|gb|ACV75164.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 380 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 191/372 (51%), Gaps = 43/372 (11%) Query: 1 MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+++D D KTEAP+ K++ + +G+ S+E + ++LA L + L +Y Sbjct: 1 MADSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVY--- 57 Query: 60 SDLHVLLASATQ------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG------- 106 DL ++L K + S + L+T + ++P +LF++ Sbjct: 58 -DLGIMLKMGLSFDFNAFSKFDPFSVFIRLITCI-------ILPFSMLFVLMAFAAIAAP 109 Query: 107 --IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 +GS L R LN KP +R++ G R++ + L KS VK++L+G++ Sbjct: 110 AVLGS-LGFRWEALNF---KP--ERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLW 163 Query: 165 SLTENYFTMLDFISANPHSIL---YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 L + ++ + + + H F + VL+M + +A + +D+ + + Sbjct: 164 ILWQRLPVIMQLGRHDLKAAINEIGHIFLIL--VLVMSVA-LAVVAAIDVPIQIFRRNRR 220 Query: 222 LKMSKQEIKDEIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 L+MSKQEIKDE KQ+ G+P IK RQ+ IA R ++ +A +T++ITNPTH+A+AL Sbjct: 221 LRMSKQEIKDEHKQTEGSPEIKAAVRQRQIAVFRASNR--KAVQDSTVVITNPTHFAVAL 278 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 +Y E+ AP++ AKG + +A +R++A E ++P+ P LAR+++ I Y Sbjct: 279 KYKAGEDIAPIVTAKGIDELALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELY 338 Query: 340 KAVAQLIYKIYH 351 KAVA ++ I+ Sbjct: 339 KAVASILAFIFR 350 >gi|126730129|ref|ZP_01745941.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37] gi|126709509|gb|EBA08563.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37] Length = 363 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 172/352 (48%), Gaps = 11/352 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D K+ PS +K++ A +G P R L ++ ++ L L+ + G Y ++ Sbjct: 1 MADQDEAAEKSHEPSQRKLDQARKKGEIP--RSTDLLTA-MSYLGMLVCGTAAGGYMLSQ 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV------IPGLLLFMMFGIGSYLIQR 114 V+L Q + I+ F L+ S +V +P LL+ +F + + R Sbjct: 58 FAEVMLPLLEQP--DRIAKGFFGGNAAPLAGSVMVAAISPVLPLLLVPGVFVLLTLFATR 115 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 ++P R++ EG K + L F KSFVK+ + ++ + L +++ Sbjct: 116 GFTFAGTKLQPKVSRINPIEGAKNKFGRRGLFEFFKSFVKLTIYSALLAVFLQHQLDSIV 175 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + P + + + L++++L + +D W + K +MS++E++DE+K Sbjct: 176 GTVFGTPAEAILLMTDLILRFLLVVVLIAVVIGGIDAFWQRMEHIRKNRMSQKELRDEMK 235 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK ++ A+ ++M+ A ++I NPTHYA+AL++ + APV VAK Sbjct: 236 DSEGDPHIKQHRRMRAQEMALNQMLPDVPDADVVIVNPTHYAIALKWSRMPGSAPVCVAK 295 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + +A ++R++A + +PI +P AR+LF I I Y+ VA I Sbjct: 296 GTDHVAARIREVATDAGVPIHSDPPTARALFATTRIGDEIATEHYRPVAAAI 347 >gi|58426834|gb|AAW75871.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae KACC10331] Length = 333 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 127/229 (55%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 79 IMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQPLE 138 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + + +L + L +D + W KLKM+++EIK E+K+S G+P + Sbjct: 139 QAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSPEV 198 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A + Sbjct: 199 KGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMAFR 258 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y Sbjct: 259 IREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQ 307 >gi|300310132|ref|YP_003774224.1| type III secretion HrcU transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072917|gb|ADJ62316.1| type III secretion HrcU transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 371 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 172/351 (49%), Gaps = 16/351 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHV 64 D+K E P+ KKIEDA +G +SR+ + +++A + L + ++++ + Sbjct: 3 DDKNEEPTDKKIEDAKKKGQIAVSRDLARLVTLVAVMEAALAADSLWRGAVFNLMEGGVL 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + Q + + +L ++ A ++ P + +G LI ++ Sbjct: 63 GVGQDFQTAMNNQLTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIAT------EALE 116 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P +++ GIK+I+S LV + K L+ ++ ++ + P + Sbjct: 117 PKLDKLNPVNGIKQIFSKKKLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGGEPKDV 176 Query: 185 LYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSK--LKMSKQEIKDEIKQSYGNPI 241 Y AF T+ R + +I++ L V+D ++ +++ K L M ++EIK E K+S G+P+ Sbjct: 177 -YEAFVTLLRNIFHLIIVVCLVLGVID--YAVQKYFHKKDLMMDQEEIKREFKESEGDPM 233 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K ++K +AR T +A ++ NPTH+A+A+ Y E P+++AKG++ IA+ Sbjct: 234 VKGQRKQLARQWANEAPAAKTEKANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEIAQ 293 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 M A+ IP+ LAR+L+ + +P Y+AVAQ +Y + H+ Sbjct: 294 AMIARAHACGIPVIRHVWLARTLYATCQDDMPVPRSSYQAVAQ-VYAVVHE 343 >gi|78224286|ref|YP_386033.1| flagellar biosynthesis protein FlhB [Geobacter metallireducens GS-15] gi|78195541|gb|ABB33308.1| Flagellar biosynthetic protein FlhB [Geobacter metallireducens GS-15] Length = 353 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/360 (26%), Positives = 193/360 (53%), Gaps = 17/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL----FFFSPGIY 56 MSE D +KTE P+ K++++A +G P SR+ + +++A ++ L F F+ + Sbjct: 1 MSEED-KHSKTEQPTPKRLDEAKKKG-VPHSRDLTSTVTLIASMVALYTTGGFMFTT-LK 57 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 S TS++ S +L + S + LL L L ++V P +L+ ++ G+ + + Q Sbjct: 58 STTSEI---FGSMGTFQLTE-SSVEMLLVKLFLVMLQVVGPFMLVVVIVGLFTTVAQVGF 113 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 +N + ++++ E ++++ ++ + K+ +KI++VG + + + ++ Sbjct: 114 SMNAERIAFKPEKLNPAENFGKLFNKDSFMEMAKATLKILIVGYMSYKIMRDELDGIIYL 173 Query: 177 ISANPHSILY---HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 + IL H F K++I + L ++D+ + ++ + KM+KQE+KDE Sbjct: 174 TDTDLSGILELFKHLCF---KLVIHTCGVLLILGIVDLVFVKWRFIERQKMTKQEVKDEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K+S G+P +K + + + + + ++ A ++ITNPTH+A+AL+Y + AP ++A Sbjct: 231 KESEGDPKVKGKIRQMQFQQAQRRLRAVIPTADVVITNPTHFAVALKYDRLTMAAPTVLA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A+ ++ +A E+N+ + E LAR L+ QV IP Y AVA+++ +Y K Sbjct: 291 KGADHMAQTIKAMARENNVMLVENRFLARELYAQVKEGEEIPEALYAAVAEVLAYVYSLK 350 >gi|296531764|ref|ZP_06894586.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] gi|296267903|gb|EFH13708.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] Length = 370 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 175/365 (47%), Gaps = 25/365 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + +A S +K++ A G+ P+SRE S F L+F + + + Sbjct: 1 MAEETGQEKTLDA-SPRKLQQARERGDLPMSREGSSFG---------LYFITLLLLWLAG 50 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS---------LSASRLVIPGLLLFMMFGIGSYL 111 L SA L + LT + + +++P L + + +L Sbjct: 51 GLIGQRFSAVLLPLLEQPEAFLELTEAGHRRAALAVVEALALVLLPVFALLLAGSLLPHL 110 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTE 168 +Q VL ++P +S+ G +R++ + L F K K V ++ L E Sbjct: 111 LQNNVVLAPQRLEPKLSHLSIISGFRRLFGLKGLFEFAKGLTKAGAVAGACWLVAAPLLE 170 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + +A ++ A + L+ I L A + +LDI + ++ + +M+ QE Sbjct: 171 GSPQLAALDAAAFGPLVLRALAGM---LLAITLVAAGVAILDISFQRFEYARRQRMTHQE 227 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +++E++ + G+P +K K + + +M+ AT+++TNPTHYA+ALRY + + A Sbjct: 228 MREEMRATDGDPHVKAALKKKRKQLSQRRMLADVPGATVVVTNPTHYAVALRYERGRDVA 287 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV VAKG + +A ++R +A + + E+ +LAR+L V + IPP ++AVA++I Sbjct: 288 PVCVAKGVDRMALRIRDLARGAGVAVMEDRALARALHASVEVGQVIPPAHFEAVAKIIGI 347 Query: 349 IYHKK 353 ++ ++ Sbjct: 348 VWAQQ 352 >gi|332187868|ref|ZP_08389601.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17] gi|332012029|gb|EGI54101.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17] Length = 375 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/360 (27%), Positives = 170/360 (47%), Gaps = 25/360 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE KTEAP+ K+ + A +G SR+ + ++A + +L+F P + Sbjct: 1 MSEGG---EKTEAPTQKRRQKAREDGQILRSRDLAAALVMMAGIAWLMFA-GPTLLGACK 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LFMM---------FGIGSY 110 + + +ED L+ A ++P L LF + G+GS Sbjct: 57 AVMAASFQFSHADVEDFEPFRPLM-----EAGWKLLPSLASLFAVTIVATIASQAGLGSL 111 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 N + P +++ G+KRI+ + KS +KI+L+G + L + Sbjct: 112 Q------FNPKALTPKPSKLNPASGLKRIFGMQGWTELGKSLLKIVLLGALGGYMLWTSS 165 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 L ++ +S + T +L+++ + + D+ Q SKLKM+KQEIK Sbjct: 166 RATLGLAQSDLNSAIGSLGGTFITILLVMGFGLVLIAGFDVPIQIFQLLSKLKMTKQEIK 225 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE K+S GNP K ++ R + A A +I+TNPTH+A+ALRY + +++ PV Sbjct: 226 DEHKESEGNPEAKAHIRAKQREMSHRAVRAAVQEAHVILTNPTHFAVALRYERGKDEVPV 285 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +VAKG+ A +R++A E P+ E P LAR+++ + Y+A+A ++ ++ Sbjct: 286 VVAKGRGATALAIRELAAELATPVLEYPQLARAVYYTSREGQEVRADLYQAIAVVLAFVF 345 >gi|21230687|ref|NP_636604.1| type III secretion system protein HrcU [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769318|ref|YP_244080.1| type III secretion system protein HrcU [Xanthomonas campestris pv. campestris str. 8004] gi|21112276|gb|AAM40528.1| HrcU protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574650|gb|AAY50060.1| HrcU protein [Xanthomonas campestris pv. campestris str. 8004] Length = 357 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 41/355 (11%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFF 50 D KTE P+ KK++DA +G PIS + S F L L+ + F Sbjct: 3 DEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGFD 62 Query: 51 FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 F+ + T D A+A R L I LLT +P + + G+ Sbjct: 63 FT----TNTRD-----ATALHRALGRIGIQGVLLT----------LPFVTACLAAGLIGT 103 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 +Q +L V P F ++ G+K+++S+ +L+N +K +K ++G ++ L Sbjct: 104 FVQTGLNASLKPVTPKFDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALM 163 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQE 228 T++ P I + + + + +L + D WS W +MSK E Sbjct: 164 PTIIGLAYQPPADIAQIGWRALGILCALAVLVFVLVGAAD--WSVQHWLFIRDKRMSKDE 221 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 K E K+S G+P +K ++K A+ + E ++A +++ NPTHYA+AL Y Sbjct: 222 QKREHKESEGDPEVKGKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGL 281 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 P +VAKG + A ++R A+ IPI P LAR+L +V + A+P ++ VA Sbjct: 282 PQVVAKGVDEGALELRAYAHNQGIPIVANPPLARALH-EVELGEAVPESLFETVA 335 >gi|300871796|ref|YP_003786669.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli 95/1000] gi|300689497|gb|ADK32168.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli 95/1000] Length = 404 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 109/361 (30%), Positives = 193/361 (53%), Gaps = 30/361 (8%) Query: 8 DNKTEAPSSKKIEDALNE-GNAPISRE--ASLFSSILACLIYLLFFF-----SPGIYSVT 59 + +TE P+ +K A E G S E +L + LI LL + S + Sbjct: 47 EGRTELPTERKKRRAREEEGRVVNSVEINQTLVLGVTTVLIALLIGYLTNTLSQFFVDIL 106 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + A+ T L DI + LL ++ +A +++ L++ G+G L Q + Sbjct: 107 NRISNADATMTMDGLPDIFIEIVLL--IAKTAGIVLLTALII----GVGVNLAQTQFLFT 160 Query: 120 LNHVKPSFKRVS-----LREGIKRIY-SINNLVNFMKSFVKIILVG--TIITISLTEN-Y 170 +KP+FKR++ +E R++ S NL+N K K+I++G T TI+ N Sbjct: 161 TKKLKPNFKRIAPTWSNFKE---RVFISSQNLMNLAKILFKMIVIGILTFTTINGRRNDL 217 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 F M+ A ++ FF V +++ +++F+ + V+D + Q+ + LKM+K E+K Sbjct: 218 FNMVHMELAQAMNVF---FFIVLEMIGKVMIFMIIVAVVDYYFQRKQYINSLKMTKHEMK 274 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 +E K+ G+P++KN+ + +AR + M+++ A +IITNPTH+A+AL+Y Q+ + AP+ Sbjct: 275 EEFKEMEGDPLVKNQLQEMARKIVSRTMLKSVPEADVIITNPTHFAVALKY-QSGDYAPI 333 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + AKG + IA K+++IA EH + I E LAR L+ V I IP + V++++ ++Y Sbjct: 334 VTAKGVDNIALKIKEIAKEHEVEIVENKPLARELYYNVDIGQYIPEKLFHVVSRILGEVY 393 Query: 351 H 351 Sbjct: 394 R 394 >gi|171915731|ref|ZP_02931201.1| Type III secretory pathway, component EscU [Verrucomicrobium spinosum DSM 4136] Length = 347 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/342 (25%), Positives = 177/342 (51%), Gaps = 11/342 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ KK+ DA +G S++ + +A + + + P + +L +L Sbjct: 3 EKNEPPTPKKLRDARKKGQVAKSQDVGTAALTIASFVTIGIMW-PSMVEQAKELILLPVQ 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVI----PGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + + S L L+ R V+ P L++ M+ G+ + Q +L +K Sbjct: 62 YYDKPFQQGS------MELMLAIGRKVLLMSLPILMVVMVVGLAAGFGQIGFMLTFEPLK 115 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P K+++ + K+I+S+ +LV +KS +K+ ++G II + + S+ Sbjct: 116 PELKKLNPMDKAKQIFSMKSLVELLKSTIKVGVIGIIIYYVTKASLDPLTRLPYGGEESV 175 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L ++ + + +++ + D + +Q +LKMSK E+K E K+S GNP IK Sbjct: 176 LTALQPMIKALTMNVVMAYIIIAAADFFFQKYQHIKQLKMSKDEVKREYKESEGNPEIKG 235 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++K +A+ + M T +A++++TNPTH A+A+ Y + ++ P ++AKG++ +A++M Sbjct: 236 KRKQLAQEAAQSDTMGRTRKASVVVTNPTHLAIAIYYDENDDKMPRVLAKGEDHVARRMV 295 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++A E IP+ + LAR+L++ V I+ +P + +A+++ Sbjct: 296 EVAREEGIPVMQHVPLARALYENVDIDRFVPSDLIEPMAEVL 337 >gi|115360600|ref|YP_777737.1| type III secretion system protein HrcU [Burkholderia ambifaria AMMD] gi|115285928|gb|ABI91403.1| type III secretion exporter [Burkholderia ambifaria AMMD] Length = 352 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 23/349 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK++ EG +++ + L +A L ++ + G + + L ++ Sbjct: 3 DEKTEEPTDKKLDKVREEGQ--VAKSSDLVE--VASLGSIVLVLTAGQHYLADTLRAVVK 58 Query: 68 SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 A R+L+D+S L H+ + A L+ + ++ + Q ++L Sbjct: 59 EAIDFTHGPRELQDLS---VALVHMGVQALGLLCGIAAVALVAAFLALAPQTGLKISLKA 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TI-SLTENYFTMLDFISA 179 V P VS G +RI+S+N+ ++ +K VK ++ ++ TI S + LD Sbjct: 116 VMPKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDRSVP 175 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSY 237 ++L+ V V++ + +FIA + D + +W K +MSK E+K E K+S Sbjct: 176 QLIAVLWSVLMHV--VVVALGVFIA-IGAFD--YKLQKWLFIRKNRMSKDEVKREHKESD 230 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K +K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + Sbjct: 231 GNPEVKGERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGVD 290 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++R+ A +PI P +AR L K VP+N IP ++ VA ++ Sbjct: 291 EQALRLRQQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 338 >gi|126462469|ref|YP_001043583.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17029] gi|126104133|gb|ABN76811.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17029] Length = 380 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E + KTE P+ K+ E A +G+ S+E +F+++ L L+ P + Sbjct: 1 MAEGEDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117 S V+ A D+ I + L + ++I GL++ + L+Q + Sbjct: 61 WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112 Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +N + SFK R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+ Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232 Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290 S G+P +K R Q +R+ R + ++ +AT I+TNPTH+A+ALRY+ E APV Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++A G+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y Sbjct: 293 ILAMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 352 Query: 351 H 351 Sbjct: 353 R 353 >gi|237508977|ref|ZP_04521692.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] gi|235001182|gb|EEP50606.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 352 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 178/351 (50%), Gaps = 21/351 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62 D KTE P+ KK+ DA +G +SR L S+ + L+ +F + ++ + Sbjct: 3 DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADYFGDAMRALVNGA 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +++ L +++ ++ ++LSA V+P L + + GIG ++Q ++L Sbjct: 61 LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V P+ ++ EG+K+++S + + +K VK ++V + ++ + + + +P Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L F R++L L+ +A L +L D+ + K+KM+K E+K E K G Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K +K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDE 291 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|103488400|ref|YP_617961.1| flagellar biosynthesis protein FlhB [Sphingopyxis alaskensis RB2256] gi|98978477|gb|ABF54628.1| type III secretion exporter [Sphingopyxis alaskensis RB2256] Length = 379 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 176/359 (49%), Gaps = 18/359 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P++KK D+ EG+ +SRE + +LA +++ + G + V S Sbjct: 1 MAEGPDKDQKTEQPTAKKRADSTREGDVLMSRELATALMMLAAAGWIV---AAGGWFVQS 57 Query: 61 --DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 DL + T + D + L+ + + +++P L +F + P + Sbjct: 58 AGDLVRRGLTLTAADVADFAPGEALMRN----GAEILLP---LTSLFALALGAAVAGPAM 110 Query: 119 ----NLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 FK R++ G+KR++ + K+ K+IL+G I + + Sbjct: 111 LGSMGWRGKALHFKGNRINPMSGLKRMFGMQGATELGKAIAKVILLGGIGYWLVARSLPA 170 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 ++ ++ + + A + ++ + + + ++D+ + Q +L MSK EIKDE Sbjct: 171 IMSMAGSDLIAAIGLAGKAIGHAMLALAGGLVVIALIDVPVQWFQRNKRLMMSKHEIKDE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 ++QS G P +K Q+ A + +A S AT+++TNPTH+++ALRY + APV+V Sbjct: 231 MRQSDGAPELKQAQRQRAHEILSGSARKAVSEATVVLTNPTHFSVALRYRPGTDAAPVVV 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A+G+ +A +R++A N+P+ E P L R+++ IP + AVA ++ ++ Sbjct: 291 ARGRGDVALSIRELARAANVPMLEYPQLTRAIYFTARAGRTIPEELFVAVATVLAFVFQ 349 >gi|284989537|ref|YP_003408091.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160] gi|284062782|gb|ADB73720.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160] Length = 377 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/348 (24%), Positives = 178/348 (51%), Gaps = 8/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ ++++ A EG P ++E + A +LL + Sbjct: 1 MAKDGPGGEKTEDPTPQRLKKARKEGQIPRTQELGTWVGAAAA-SFLLPMLVRNAFDQVG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + V + + + ++ + LL + + +P + M+ G+ + Q ++ Sbjct: 60 AMFVQVGAVVE--TPEVEAVTALLGQALDTFVTVALPMAVALMVVGVAASAAQGGVTVSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+ K+++ G+KR++ + L K+ +K +GT++ ++ ++ ++ A Sbjct: 118 KPMKPTLKKLNPFPGMKRMFGGHGLWEATKAVIKTAALGTVVVVT-SDRAQQLVSSAGAL 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P S + A FT VL++ ++ + L V D + +L+M+K EI+ E K S G Sbjct: 177 PLSAIT-ATFTDSAVLMIRVVAVTGLVIAVADYVIVRKRTMKELRMTKYEIQQEHKNSEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K ++++ + R++MM + A +++ NPTH A+AL+Y + + AP +VAKG + Sbjct: 236 DPHVKAQRRATQMAMSRNRMMAEVADADVLLVNPTHVAVALKY-EPDRGAPRVVAKGADE 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A K+R+ A E +P+ ++ LAR+L I +P + AVA+++ Sbjct: 295 VAAKLRERAAEARVPLVQDVPLARALHASCEIGQEVPAQLFTAVARVL 342 >gi|109947223|ref|YP_664451.1| flagellar biosynthesis protein FlhB [Helicobacter acinonychis str. Sheeba] gi|109714444|emb|CAJ99452.1| flagella-associated protein [Helicobacter acinonychis str. Sheeba] Length = 358 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 176/356 (49%), Gaps = 39/356 (10%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E + SI I+ + FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 D + + + ++L L+ L++P L++ +M S ++Q + Sbjct: 62 LKDFSLDFSRESVQEL---------FNQLAKDTFLLILPILIILVMVAFLSNVLQFGWLF 112 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 113 APKAIEPKLSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161 Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + A ++ L+ L L +D+ Q+ + LKM+KQ Sbjct: 162 LFLGELNHAALLNLKDQLLWFKNKALLLISSLLFLFFILAFIDLIIKRRQYTNSLKMTKQ 221 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+KDE KQ G+P +K + + +KMM+ +A +++TNPTHYA+AL++ E+ Sbjct: 222 EVKDEYKQQEGSPEVKAKIRQTMMRNAANKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 PV+VAKG + +A +++ IA E++I I E +LAR L++ V +N+AIP ++AVA Sbjct: 281 VPVVVAKGTDHLAIRIKGIAREYDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336 >gi|119947198|ref|YP_944878.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37] gi|119865802|gb|ABM05279.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37] Length = 374 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 181/349 (51%), Gaps = 13/349 (3%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF--SPGIYSVTSD 61 +D +KTE S++K++ + EG ++E F+S L + L+F+ I + Sbjct: 2 SDNAQDKTEQASAQKLKKSKGEGQIARAKE---FASACMLLGFCLYFYLSFERIAEAALN 58 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L L S + L+D ++ L + + P + + ++ + L+ V + Sbjct: 59 LFKLNFSFSVATLQDNDQMLIRLNKSLFTLIEIFFPFIFVVVLSTLIGSLVLGGWVFSFK 118 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF----I 177 ++P ++S +GIKR++S+ LV +KS +K+ ++ ++ L+ N ML I Sbjct: 119 TIQPKLDKLSFLKGIKRMWSLKTLVELIKSILKVAVIVYLLYSFLSNNLLYMLSLQRLPI 178 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 A+ ++L T +I ILL ++D+ + +++ ++KMSKQE+K+E KQ+ Sbjct: 179 EASSIAVLTK-LATYSLYIIAILLLYG---LIDLPYQLYEFNKQMKMSKQELKEEHKQAE 234 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P +K R + I + + + + A +II NPTHYA+A++Y +AP LVAKG + Sbjct: 235 GRPEVKQRIRQIQQQMSQRAITKTVPDADVIIMNPTHYAVAIKYDPKRAEAPFLVAKGND 294 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +++IA ++N+ + P+LAR+++ + IP + A+A ++ Sbjct: 295 QTALFIQRIALDNNVEVVISPALARAIYHTTQLEQMIPNQLFVAIAHVL 343 >gi|319764528|ref|YP_004128465.1| type iii secretion exporter [Alicycliphilus denitrificans BC] gi|330826744|ref|YP_004390047.1| type III secretion exporter [Alicycliphilus denitrificans K601] gi|317119089|gb|ADV01578.1| type III secretion exporter [Alicycliphilus denitrificans BC] gi|329312116|gb|AEB86531.1| type III secretion exporter [Alicycliphilus denitrificans K601] Length = 386 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 173/346 (50%), Gaps = 15/346 (4%) Query: 15 SSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT 70 + +K++ A ++G A SR+ S L + LA L+ +F ++ L V A+ Sbjct: 12 TERKLQKARSDGQAARSRDLSHLAILGTGALALLVLAPWFVEYLQRALRQQL-VFNAATV 70 Query: 71 QRKLEDISHIVFL--LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q E +S + + + L+ +A L+ G L G G + + +L + P F Sbjct: 71 QMPGEMLSRLRTMAGVGLLASAAFALLTSGAALLSAIGAGGW------IFSLKPITPQFN 124 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SANPHSILYH 187 R++ G ++S + N K + ++ + + + M + +P S L H Sbjct: 125 RLNPLSGFANLFSKQQMANVAKMVLMTGILAAVAWNFMGRSIEQMAALVLQPSPLS-LRH 183 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A + + ++LL + V+D+ + S+LKMS +E+K E K+S GNP +K RQ+ Sbjct: 184 AGQWIVSGMSLLLLVVFLFAVIDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKGRQR 243 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 AR + A +A ++ NPTHYA+AL+Y + AP +V+KG +L+A ++R++A Sbjct: 244 QRAREIADRASIAAVPKADFVVMNPTHYAVALKYDEASMGAPQVVSKGTDLLAFRIRELA 303 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 304 QQHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349 >gi|119385353|ref|YP_916409.1| flagellar biosynthesis protein FlhB [Paracoccus denitrificans PD1222] gi|119375120|gb|ABL70713.1| type III secretion exporter [Paracoccus denitrificans PD1222] Length = 368 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 172/361 (47%), Gaps = 32/361 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP---GIYS 57 MS + D + +A SK + A EG+ P S E + + L+YL F+F+ I++ Sbjct: 1 MSRENNDDKQFDATESK-LRKARQEGDVPRSAE------LQSALMYLGFWFAALFATIWA 53 Query: 58 VTSDLHVLLASATQRKLEDISH--IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 V + L + D + L L+ A + + G+ + + + + QR Sbjct: 54 VPAWLGMAARVLGGEPWPDAEGRAVADLARALAGQAGLVTVAGVAIMALPILLGMVAQRS 113 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG--------TIITISLT 167 VL + P FKRV+ + + + + LV F S K +LVG +++ +T Sbjct: 114 VVLTPKKLLPDFKRVNPVKNAAQKFGKSGLVTFAISLGKALLVGVGGWFLYASLLAWLMT 173 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 L ++ +R+ +++ L A ++D+ W ++ + +MS+Q Sbjct: 174 SGAMRDLQWVEG--------LGLILRRAVLLALGIGAIFAIIDLIWKRLEYLKRHRMSRQ 225 Query: 228 EIKDEIKQSYGNPIIK--NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 E++DE K++ G+P +K RQK + + M+ +A +II NPTHYA+AL + + Sbjct: 226 EMQDEHKENEGDPHLKAARRQKGV--DIVLSAMLADVQKADVIIVNPTHYAVALEWKRGS 283 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 APV +AKG + +A+++R+ A +H +PI+ +P AR+L V I I + VA Sbjct: 284 GRAPVCLAKGVDDVARRIRERAQDHRVPIWSDPPCARALHATVEIGQEIKAEHFAPVAAA 343 Query: 346 I 346 I Sbjct: 344 I 344 >gi|108758626|ref|YP_630670.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] gi|108462506|gb|ABF87691.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] Length = 359 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 174/369 (47%), Gaps = 40/369 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D KTE PS KK++D+ +G S++ S +L G+ +V Sbjct: 2 SDESGEKTEEPSQKKLDDSRKKGQVWKSKDLSGVGVLLV-----------GLAAVKGSWD 50 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118 +L T S +F HL+ V G LLF+ G+ + ++ +PVL Sbjct: 51 MLETELT-------SLFLFSFDHLTNPVDLSVATGQLLFL--GLRAVVLVSLPVLAGGAI 101 Query: 119 --------------NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 ++ + P ++++ +G+K +++ +V +K+ +KI + ++ Sbjct: 102 VGGLMEYLQVGTLFTMDPLIPKMEKLNPIQGMKNLFNKKAIVELLKNLIKISVTAYVVYG 161 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 + ++ + + + + I+ V +V + L V D+ W + + M Sbjct: 162 VVRDSMPMVAETLRQDTRGIMAIMGELVTRVATRVALLFVLFGVFDVWWQRKSFMKDMMM 221 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +K+E+K E KQS G+P K ++K + + + MEA A +I+TNP H A+AL+Y + Sbjct: 222 TKEEVKKEYKQSEGDPHHKAKRKEMHQEIMEGAQMEAVREADVIVTNPDHVAVALKYDRE 281 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 ++ AP ++A+G + A++++ IA E ++P LA +L + V + +P Y AVA+ Sbjct: 282 KDGAPRVLARGIDFKAERIKAIAREQDVPTLRNVPLAHALLR-VEVGHEVPEELYDAVAE 340 Query: 345 LIYKIYHKK 353 ++ +Y K Sbjct: 341 VLNFVYGLK 349 >gi|326404521|ref|YP_004284603.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum AIU301] gi|325051383|dbj|BAJ81721.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum AIU301] Length = 324 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 1/232 (0%) Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 N + +F R++ GI +++ NL +S +K+ +G + + + + + Sbjct: 84 NWGAIGLNFARLNPLAGIGKLFGTPNLAASGQSILKLAAIGAALYVVMDARLHGLEAMLL 143 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++L F ++ +L ++ +D +++ + +KMS+QE+KDE K++ G Sbjct: 144 GSEKTLLAAIFGSIVAILSAAVMIQVVSGAVDFVLVRNRFSTSVKMSRQEVKDEQKETDG 203 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P ++ R K+ + + + A +RA ++ITNPTHYA+AL Y + +AP +VAKG + Sbjct: 204 DPHVRARIKAARSALAKRSLNVAMARAAVVITNPTHYAVALEYRAGQAEAPKIVAKGADE 263 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A ++R +A E IPI P LAR+LF+Q + + I P Y+AVA++I I+ Sbjct: 264 RAARIRDLAREARIPIVANPPLARALFQQ-DVETEILPEHYRAVAEIIAYIW 314 >gi|256376454|ref|YP_003100114.1| type III secretion exporter [Actinosynnema mirum DSM 43827] gi|255920757|gb|ACU36268.1| type III secretion exporter [Actinosynnema mirum DSM 43827] Length = 363 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 171/338 (50%), Gaps = 4/338 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 + TE P++KK+ DA EG + + + IL L + + + L L + Sbjct: 7 DATEEPTAKKVRDAKREGRMARTPDLGTWLGILGATWTLPMTLT-SLLDIGQGL--LKKA 63 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A + + V ++ L + V+P L ++ + + +Q ++ KP F Sbjct: 64 AGFMAAPEPALAVAIVKDGVLDGALAVLPLSLTIIVATLVAAGLQGTLRMSTKQFKPKFT 123 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +GIK ++ ++L +K+ +K L+ ++ +S++ +++ + + ++ A Sbjct: 124 QLNPLKGIKNMFGPHSLWEALKTLIKTSLLAGLLYVSVSGLVPSVVASGTLSLAALTDVA 183 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 T +L + + + V+D + + + +LKM+KQE+KDE KQS G+P +K +S Sbjct: 184 TGTAMSLLRLAAIGGLVMAVVDYAVAKRRIHKELKMTKQEVKDEHKQSEGDPQLKGAIRS 243 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R++MM A +++ NPTH A+ALRY AP +VAKG IA K+R++A Sbjct: 244 KQMQMSRNRMMAEVPNADVVLVNPTHIAVALRY-DPARGAPRVVAKGAGAIATKIRELAT 302 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 EH +PI ++ LAR+L K + IP + VAQ++ Sbjct: 303 EHRVPIVQDVPLARALHKACEVGHEIPFEMFGPVAQVL 340 >gi|148261120|ref|YP_001235247.1| type III secretion exporter [Acidiphilium cryptum JF-5] gi|146402801|gb|ABQ31328.1| type III secretion exporter [Acidiphilium cryptum JF-5] Length = 335 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 1/232 (0%) Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 N + +F R++ GI +++ NL +S +K+ +G + + + + + Sbjct: 95 NWGAIGLNFARLNPLAGIGKLFGTPNLAASGQSILKLAAIGAALYVVMDARLHGLEAMLL 154 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + ++L F ++ +L ++ +D +++ + +KMS+QE+KDE K++ G Sbjct: 155 GSEKTLLAAIFGSIVAILSAAVMIQVVSGAVDFVLVRNRFSTSVKMSRQEVKDEQKETDG 214 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P ++ R K+ + + + A +RA ++ITNPTHYA+AL Y + +AP +VAKG + Sbjct: 215 DPHVRARIKAARSALAKRSLNVAMARAAVVITNPTHYAVALEYRAGQAEAPKIVAKGADE 274 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A ++R +A E IPI P LAR+LF+Q + + I P Y+AVA++I I+ Sbjct: 275 RAARIRDLAREARIPIVANPPLARALFQQ-DVETEILPEHYRAVAEIIAYIW 325 >gi|221069313|ref|ZP_03545418.1| type III secretion exporter [Comamonas testosteroni KF-1] gi|220714336|gb|EED69704.1| type III secretion exporter [Comamonas testosteroni KF-1] Length = 393 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 2/238 (0%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + ++P F +++ G+K ++S L +K I++G + ++ N + Sbjct: 113 IFSFKPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFLTIVLGFVAWKYMSAN-IAEIAS 171 Query: 177 ISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +SA P + L + + ++L+ + + ++D+ + S+LKMS +E+K E K+ Sbjct: 172 VSAQPSPMALAMVGSWLTTGVTLLLVVVLLVALIDVPLQAFLFKSRLKMSHEEVKQEHKE 231 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S GNP +K + + R + A RA ++TNPTHYA+ALRY AP ++AKG Sbjct: 232 SEGNPQLKGKIRQKQREIADRASVSAVPRADFVVTNPTHYAVALRYDDATMAAPQVIAKG 291 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +L+A K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 292 TDLVALKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349 >gi|53722427|ref|YP_111412.1| type III secretion system protein HrcU [Burkholderia pseudomallei K96243] gi|52212841|emb|CAH38875.1| putative type III secretion-associated protein [Burkholderia pseudomallei K96243] Length = 352 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62 D KTE P+ KK+ DA +G +SR L S+ + L+ F + ++ + Sbjct: 3 DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +++ L +++ ++ ++LSA V+P L + + GIG ++Q ++L Sbjct: 61 LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V P+ ++ EG+K+++S + + +K VK ++V + ++ + + + +P Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L F R++L L+ +A L +L D+ + K+KM+K E+K E K G Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K +K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDE 291 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|145297440|ref|YP_001140281.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida subsp. salmonicida A449] gi|142850212|gb|ABO88533.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida subsp. salmonicida A449] Length = 378 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 177/349 (50%), Gaps = 14/349 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+N A D KTE SS+K+ A EG S+E S +L + + + P + Sbjct: 1 MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQWMV-PSFGHFFA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + D ++ LS +++P + + ++ VL Sbjct: 59 ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + PS ++++ +G+KR+ S ++L+ +KS +KI+L+G+ + + L + ++ Sbjct: 119 KKLLPSAEKLNPLKGLKRMLSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238 P + + A + + I++ + VLD+ Y +W +L+M+KQE+KDE K S G Sbjct: 179 PQAAMEQALQILSQAFILLGSVQMLIAVLDV--PYQRWSLNKQLRMTKQEVKDEHKNSEG 236 Query: 239 NPIIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 P IK + Q +AR+RI ++ +A +II N THYA+A++Y +AP ++AK Sbjct: 237 RPEIKAKIRQVQGMLARARIEQRV----PQADVIIVNTTHYAVAIKYDPERANAPYVIAK 292 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 G + +A+++R++A +H+ + P L R+++ ++ +P Y AVA Sbjct: 293 GVDGMAERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVA 341 >gi|3435112|gb|AAC32325.1| flagellar protein FlhB [Rhodobacter sphaeroides] Length = 376 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 176/361 (48%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E D KTE P+ K+ E A +G+ S+E +F+++ L L+ P + Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117 S V+ A D+ I + L + ++I GL++ + L+Q + Sbjct: 61 WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112 Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +N + SFK R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+ Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232 Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290 S G+P +K R Q +R+ R + ++ +AT I+TNPTH+A+ALRY+ E APV Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++A G+ +A + + + + P LAR+L+ I IP AVA ++ +Y Sbjct: 293 ILAMGKGPMALDIIERGRKAGVGTVRIPLLARALYFTGDIGQEIPDGLDGAVAVVLAHVY 352 Query: 351 H 351 Sbjct: 353 R 353 >gi|126176175|ref|YP_001052324.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155] gi|125999380|gb|ABN63455.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155] Length = 376 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 166/344 (48%), Gaps = 13/344 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHVL 65 +KTE + +K A EG P S++ + + ++ C L +F+ + +T ++L Sbjct: 8 DKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTNADWFATRVSGLTK-YNML 66 Query: 66 LASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRI--PVLNLNH 122 L A D+ ++ HL S L I G L M+ + + P+ N + Sbjct: 67 LTRA------DLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNFGN 120 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + R+ G+ RI+S +LV +KS +KI+L+ I+ + L + +L + Sbjct: 121 ANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRPID 180 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + + + + + + +D+ + Y +L+MS+QE+KDE Q G P I Sbjct: 181 EAVRDGINLLSQDMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKPEI 240 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + + I + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A Sbjct: 241 KAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELALY 300 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 MR++A +H+I I + P L R+++ ++ IP + A+A ++ Sbjct: 301 MRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVL 344 >gi|304412527|ref|ZP_07394133.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|307307186|ref|ZP_07586924.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] gi|304349169|gb|EFM13581.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|306910425|gb|EFN40856.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] Length = 376 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 166/344 (48%), Gaps = 13/344 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHVL 65 +KTE + +K A EG P S++ + + ++ C L +F+ + +T ++L Sbjct: 8 DKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTNADWFATRVSGLTK-YNML 66 Query: 66 LASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRI--PVLNLNH 122 L A D+ ++ HL S L I G L M+ + + P+ N + Sbjct: 67 LTRA------DLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNFGN 120 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + R+ G+ RI+S +LV +KS +KI+L+ I+ + L + +L + Sbjct: 121 ANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRPID 180 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + + + + + + +D+ + Y +L+MS+QE+KDE Q G P I Sbjct: 181 EAVRDGINLLSQGMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKPEI 240 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K + + I + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A Sbjct: 241 KAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELALY 300 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 MR++A +H+I I + P L R+++ ++ IP + A+A ++ Sbjct: 301 MRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVL 344 >gi|149203120|ref|ZP_01880091.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035] gi|149143666|gb|EDM31702.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035] Length = 362 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 123/245 (50%) Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 LLL M+ + + + QR V+ ++P R++ E K + L F KSF K+ L Sbjct: 101 LLLPMVMALAAVIAQRAFVVAPTKIEPRVSRINPVENAKNKFGATGLFEFAKSFGKLFLY 160 Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 ++ LT M+ + A I + + +I++LL + LD W Y Sbjct: 161 SLLLGGFLTYRLPEMMSTLHAEAPIIGAVMGKLIIEFMIIVLLISLAIGGLDYLWQYFDH 220 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 + +MS ++++DE+KQ+ G+P +K +++ A +MM A ++I NPTH+A+A Sbjct: 221 LRRQRMSHKDLRDELKQNDGDPAVKQQRRRRAMELASGRMMADVPTADVVIVNPTHFAVA 280 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 L++ + AP VAKG + IA +R +A E +PI E+ AR+L I I P Sbjct: 281 LKWSRKPGAAPTCVAKGMDHIALAIRDLARESGVPILEDAPTARALHATTEIGREIDPAH 340 Query: 339 YKAVA 343 Y AVA Sbjct: 341 YAAVA 345 >gi|126442638|ref|YP_001062991.1| type III secretion system protein HrcU [Burkholderia pseudomallei 668] gi|254194161|ref|ZP_04900593.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|254301605|ref|ZP_04969049.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|126222129|gb|ABN85634.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 668] gi|157811543|gb|EDO88713.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|169650912|gb|EDS83605.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] Length = 352 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62 D KTE P+ KK+ DA +G +SR L S+ + L+ F + ++ + Sbjct: 3 DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +++ L +++ ++ ++LSA V+P L + + GIG ++Q ++L Sbjct: 61 LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V P+ ++ EG+K+++S + + +K VK ++V + ++ + + + +P Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L F R++L L+ +A L +L D+ + K+KM+K E+K E K G Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K +K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDE 291 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|48479060|gb|AAT44853.1| transmembrane protein [Burkholderia pseudomallei] Length = 352 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62 D KTE P+ KK+ DA +G +SR L S+ + L+ F + ++ + Sbjct: 3 DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +++ L +++ ++ ++LSA V+P L + + GIG ++Q ++L Sbjct: 61 LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V+P+ ++ EG+K+++S + + +K VK ++V + ++ + + + +P Sbjct: 116 VRPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L F R++L L+ +A L +L D+ + K+KM+K E+K E K G Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + Sbjct: 232 DPLLKGECKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDE 291 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|260429624|ref|ZP_05783601.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45] gi|260420247|gb|EEX13500.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45] Length = 365 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 95/357 (26%), Positives = 167/357 (46%), Gaps = 22/357 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D D KT PS +K+E+A +G P S + + L L L + + Sbjct: 1 MAEDDGGD-KTHEPSPRKLEEARRKGEIPRSPDMLTAACYLGMLATGLALGGGSVMGFGN 59 Query: 61 DLHVLLASATQ------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 L L+ + + LL ++ L +P L + + + R Sbjct: 60 ALLPLIEQPDRLVPLFFNDMASAPSGGILLAAITPVLPWLGVPALAVLL-----TLFATR 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V + + R+S E K + L F+KS K++L ++ L+ T L Sbjct: 115 GLVFTASKLSLKASRLSPVENAKNKFGRRGLFEFVKSLAKLVLYSVLLGFFLS----TRL 170 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG-----WSYHQWYSKLKMSKQEI 229 D I+ S + A + L++ LL IA + + +G W + + +MS++E+ Sbjct: 171 DEIAGIGRSSAHEATALMAD-LMLRLLGIAAMIAVGLGTIDYLWQRAEHMRRNRMSQKEL 229 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +DE K++ G+P+ K +++ A+ ++MM A ++I NPTHYA+AL++ + +AP Sbjct: 230 RDEYKEAEGDPMFKQHRRARAQEIAMNRMMVDVPDADVVIVNPTHYAVALKWSRQPGEAP 289 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 V VAKG + IA+++R+IA + +PI +P AR++ I I Y+ VA I Sbjct: 290 VCVAKGVDEIARRIREIAADSGVPIHSDPPTARAIHATTEIGDQIAAEHYRPVAAAI 346 >gi|264676579|ref|YP_003276485.1| type III secretion exporter [Comamonas testosteroni CNB-2] gi|262207091|gb|ACY31189.1| type III secretion exporter [Comamonas testosteroni CNB-2] Length = 393 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 22/248 (8%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + ++P F +++ G+K ++S L +K I++G F + Sbjct: 113 IFSFKPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLG-----------FVAWKY 161 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIAT-----------LTVLDIGWSYHQWYSKLKMS 225 +SAN I + L M+ ++ T + ++D+ + S+LKMS Sbjct: 162 MSANIAEIASVSAQPSPMALTMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMS 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 +E+K E K+S GNP +K + + R + A +A ++TNPTHYA+ALRY Sbjct: 222 HEEVKQEHKESEGNPQLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDAS 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP ++AKG +L+A K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ+ Sbjct: 282 MAAPQVIAKGTDLVALKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQV 341 Query: 346 IYKIYHKK 353 + +Y K Sbjct: 342 LAYVYRLK 349 >gi|218678319|ref|ZP_03526216.1| flagellar biosynthesis protein FlhB [Rhizobium etli CIAT 894] Length = 169 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 97/164 (59%) Query: 12 EAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 EAP++KK DA +GN P SRE S+F++ILA IYL+FF G+ +T L + Q Sbjct: 1 EAPTAKKQSDAAEKGNLPSSRELSIFATILATYIYLVFFLPEGVGRMTETLRDIFEQPDQ 60 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131 K+E I+ L L +++ LV P L++FM+FGI S + Q +P L ++P R+S Sbjct: 61 WKIETGPDILSLFVRLGWASAALVAPALIMFMVFGIASSVFQNLPTPVLERIRPQASRIS 120 Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +G R++S+ L+ F KS K+++VG I+ L YF+ +D Sbjct: 121 PAKGWGRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSID 164 >gi|299531277|ref|ZP_07044687.1| type III secretion exporter [Comamonas testosteroni S44] gi|298720684|gb|EFI61631.1| type III secretion exporter [Comamonas testosteroni S44] Length = 393 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 22/248 (8%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + ++P F +++ G+K ++S L +K I++G F + Sbjct: 113 IFSFKPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLG-----------FVAWKY 161 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIAT-----------LTVLDIGWSYHQWYSKLKMS 225 +SAN I + L M+ ++ T + ++D+ + S+LKMS Sbjct: 162 MSANIAEIASVSAQPSPMALAMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMS 221 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 +E+K E K+S GNP +K + + R + A +A ++TNPTHYA+ALRY Sbjct: 222 HEEVKQEHKESEGNPQLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDAS 281 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 AP ++AKG +L+A K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ+ Sbjct: 282 MAAPQVIAKGTDLVALKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQV 341 Query: 346 IYKIYHKK 353 + +Y K Sbjct: 342 LAYVYRLK 349 >gi|332527145|ref|ZP_08403222.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2] gi|332111573|gb|EGJ11555.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2] Length = 386 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 16/355 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +DA D + A S +KI + +G S++ +++ A L LL F+P +T L Sbjct: 3 DDAQDRRLPA-SQRKISKSREDGQVARSQDLGHLATLGAGL-ALLIVFAP---RLTDWLR 57 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH- 122 +L + + + + +L LS S + L++ + G ++ + Sbjct: 58 RVLETGLRFDAQAMDRPGTMLERLSASGVDM----LVVVLPLGAVVAVVAAASAVLAGGW 113 Query: 123 ------VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++P F +++ G+ ++ LVN +K + +++G I + L Sbjct: 114 NWTFKPMQPKFSKLNPITGLGNLFKGQQLVNTLKICLLALILGAIGMLYLHAQLAEFTSL 173 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ + + ++ ++++LL + ++D+ +L+MS +E+K E K+S Sbjct: 174 VAMPLPTAMAETGSLLQGGMVLLLLALTLFALVDVPLQRFMLLRRLRMSFEEVKQEHKES 233 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP +K + K+ R R KMM A A +++ NPTH+A+AL+Y + AP +VAKG Sbjct: 234 EGNPEVKGKIKAKMREMARRKMMAAVPSADLVVMNPTHFAVALKYDEATMAAPRVVAKGA 293 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +L+A ++R A N+P+ E P LAR+L++ I+ IP + AVAQ++ +Y Sbjct: 294 DLLAFRIRDAAKAANVPVLEAPPLARALYRHAEIDQEIPAALFGAVAQVLAWVYQ 348 >gi|134282484|ref|ZP_01769188.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|134246041|gb|EBA46131.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] Length = 352 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 93/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62 D KTE P+ KK+ DA +G +SR L S+ + L+ F + ++ + Sbjct: 3 DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +++ L +++ ++ ++LSA V+P L + + GIG ++Q ++L Sbjct: 61 LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V P+ ++ EG+K+++S + + +K VK ++V + ++ + + + +P Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L F R++L L+ +A L +L D+ + K+KM+K E+K E K G Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K +K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDE 291 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|76819009|ref|YP_335586.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1710b] gi|126456589|ref|YP_001075938.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1106a] gi|167898600|ref|ZP_02486001.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|217425368|ref|ZP_03456862.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|226199022|ref|ZP_03794584.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|242312446|ref|ZP_04811463.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|254183801|ref|ZP_04890393.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|254186715|ref|ZP_04893231.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|254264656|ref|ZP_04955521.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] gi|76583482|gb|ABA52956.1| SctU [Burkholderia pseudomallei 1710b] gi|126230357|gb|ABN93770.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106a] gi|157934399|gb|EDO90069.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|184214334|gb|EDU11377.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|217391619|gb|EEC31647.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|225928797|gb|EEH24822.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|242135685|gb|EES22088.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|254215658|gb|EET05043.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] Length = 352 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 93/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62 D KTE P+ KK+ DA +G +SR L S+ + L+ F + ++ + Sbjct: 3 DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +++ L +++ ++ ++LSA V+P L + + GIG ++Q ++L Sbjct: 61 LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V P+ ++ EG+K+++S + + +K VK ++V + ++ + + + +P Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L F R++L L+ +A L +L D+ + K+KM+K E+K E K G Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K +K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDE 291 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|304321150|ref|YP_003854793.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis HTCC2503] gi|303300052|gb|ADM09651.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis HTCC2503] Length = 355 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 99/362 (27%), Positives = 180/362 (49%), Gaps = 34/362 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN K+ + ++I+ A +G+ S E +F+ L L+ LL F S ++ + Sbjct: 1 MAENQDEAEKSHEATPERIKQARQKGDVAQSPEVLVFARYLGILVALLGFVSALAMNMAT 60 Query: 61 DLHVLLA---SATQRKLEDI-------SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 L+V +A A+ R + D S +F ++ + LVI GL+ Sbjct: 61 SLNVFMARPFEASARLMSDADPLEGFGSSALFFFALMAAPIA-LVIAGLI---------- 109 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI---ILVGTIITISLT 167 Q+ V N +KP +++ + K+ + L +F+++ VKI ++VG +I ++ T Sbjct: 110 -AQQALVFAPNKIKPDLNKLNPVKNAKQKFGKAALTDFVRNTVKITIVMVVGMVIGLAQT 168 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKM 224 + P +L + +++++ IL IA L I WS Q+ +LKM Sbjct: 169 GRLTASV----GAPPGLLAEELAGLARIMVITGVILAAIAAGIDLPIKWS--QYRERLKM 222 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 S+QE+KDE K + G+P ++ ++ AR +++ + A +++ NP HYA+AL++ + Sbjct: 223 SRQELKDETKSTEGDPAQRSERQKRAREIAQNRQLLDVPDADVVVVNPEHYAVALQWNRH 282 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 + P +AKG + IA ++R IA E +P++ + ARSL+ V + I Y+AVA Sbjct: 283 RGEVPRCIAKGVDAIALRIRNIADEAGVPLYRDVQTARSLYAVVEVGEEIRYEHYEAVAA 342 Query: 345 LI 346 I Sbjct: 343 AI 344 >gi|332162921|ref|YP_004299498.1| flagellar assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667151|gb|ADZ43795.1| Flagellar assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 377 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 168/343 (48%), Gaps = 23/343 (6%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+S K+ A +G+ P S++ ++ + ++ LI L F Y L T + Sbjct: 12 PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLP--YYKELIGESFLAVGRTAGR 69 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL--------NLNHVK- 124 ++D + I +L++ L +F F + I + +L N VK Sbjct: 70 IDDPTAI-----------EQLLLANLFIFFKFLLTLAPIPLVSILATLVPGGWNFTPVKL 118 Query: 125 -PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P FK++S GIK+I+S +N +K K +V + + + + +L + Sbjct: 119 IPDFKKLSPLAGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVKNSLPDLLRLQALPLQE 178 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + F +L+ + I +DI S + + K+KM+KQE+K E K + GNP IK Sbjct: 179 AITEGFTLYHGILVYFIAIIVIFAAIDIPLSNYLFTKKMKMTKQEVKQEHKSNDGNPEIK 238 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + R ++ + A +IITNPTH+++AL+Y + AP ++AKG++ IA + Sbjct: 239 ARVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIALYI 298 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 R +A ++I I E P LAR+++ +N +P Y+A+AQ++ Sbjct: 299 RTVAKNNDIEIVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVL 341 >gi|329901844|ref|ZP_08272932.1| Type III secretion inner membrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327548981|gb|EGF33597.1| Type III secretion inner membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 365 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 86/348 (24%), Positives = 169/348 (48%), Gaps = 25/348 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67 KTE P+ KK+EDA +G P+SR+ + ++ +I LL F + ++ + D LA Sbjct: 3 EKTEQPTDKKLEDAREKGQVPVSRDMARLATFF--VIGLLAFVTEKLWHASIDSLFELAF 60 Query: 68 -------SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ ++ + L+ +++ + V+ + + FGI +L+ Sbjct: 61 LRIGAPFVPAMYEMVTVAGKLLLVIFGAIAITGTVVAIMAFWGQFGI---------LLSA 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ +G+ +++S LV + S K +L+G ++ + + + T+L Sbjct: 112 KALEPKLDKLNPVQGMMQLFSKRKLVELVVSLAKAVLIGYVLYLVILDQLPTILKLSGGT 171 Query: 181 PHSILY---HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P + Y F++ K+ + I +++D+ H L MS EIK E K+S Sbjct: 172 PRDVYYGFVEMLFSIFKIAVGICF---AFSLVDLVSQRHFHTKSLMMSMDEIKREYKESE 228 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P++K +K +A+ + T A ++ NPTH+A+AL Y P+++AKG++ Sbjct: 229 GDPLVKGTRKQLAQEWANEEPASRTQDANAVVVNPTHFAVALFYDFDAPSVPMVLAKGKD 288 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 A M A+++ IP+ LAR+L+ + IP Y++VA + Sbjct: 289 ETAHAMIARAHQYKIPVIRHVWLARTLYATAKPDHPIPKASYESVAHV 336 >gi|226225721|ref|YP_002759827.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27] gi|226088912|dbj|BAH37357.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27] Length = 366 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 194/371 (52%), Gaps = 36/371 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ KTE S K++E+A +G S E + + +L L+ + F P ++ Sbjct: 1 MAESESGGEKTEEASGKRLEEAREKGQIAKSPEFATAAFLLGFLL-VFSFTGPQLWRFLL 59 Query: 61 D-LHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI--- 115 D + LA+A D H+ L+ + + + R ++ M G + + Sbjct: 60 DTMGTSLATAG-----DSEHMGAGLIPWMQVISFRTIVA------MLGAVAAMAVVAVAV 108 Query: 116 ------PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 +L + P F+R++ RI ++V K+ +K+++VG + +++++ Sbjct: 109 QAAQTGGLLTTKTLAPKFERLNPMSNAGRILGKQSIVELAKALLKMMIVGYAVYMTVSDA 168 Query: 170 YFTMLDF-ISANPHSILY----HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS--KL 222 + + ++A+P ++L + F ++ +M L+ L + D G Y +W + L Sbjct: 169 WPDLQALALNASPMALLEVVQKYGFALIKNAGMMFLV----LAMADYG--YQRWKTMEDL 222 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 KM+KQE+K+E K GNP +K R+++IAR RIR +M A +A +II NP H A+A++Y Sbjct: 223 KMTKQEVKEEHKSQEGNPEVKGRRRAIARERIRRQMFAAVPKADVIIVNPVHIAIAIKYD 282 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 AP +VA G+ IA++++++A++H +P+ E LAR+L K + + IP Y AV Sbjct: 283 PNVAPAPYVVALGERKIAQRIKELAFQHGVPVIENKPLARALIKVAKVGTVIPVEMYLAV 342 Query: 343 AQLIYKIYHKK 353 A+++ + ++ Sbjct: 343 AEVLAFVMRQR 353 >gi|317407764|gb|EFV87691.1| hypothetical protein HMPREF0005_03212 [Achromobacter xylosoxidans C54] Length = 357 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/342 (28%), Positives = 174/342 (50%), Gaps = 11/342 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE PS K++ D+ +G+ S++ + +LA Y L + I+ ++L Sbjct: 8 EKTEPPSQKRLRDSRKKGDVAYSKDFTQTVLVLALFGYTLGN-AGAIFEALG--RIILTP 64 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A + + I +L L + +P L + + GI + +Q VL + PS K Sbjct: 65 ANFTSIPFGAAINTVLDILLQELIAISLPYLGIVIGIGIFADAMQVGLVLAFQKLLPSAK 124 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++++ +K I+S NLV F+KS KI+ + ++T + + ++ PHS L Sbjct: 125 KINIMANLKNIFSKKNLVEFLKSTAKIVFLSVLVTQVIKDAMPELMKI----PHSGLVGM 180 Query: 189 FFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + ++ +++ IA ++V D+GW Q+ L MSK+E+K E K+ G+P IK+ Sbjct: 181 GAAMGSMMRTLVVNIAVAYFVISVADLGWQRMQYRKGLMMSKEEVKQEYKEMEGDPHIKH 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +K + + + ++ T +A++++TNPTH A+AL Y + + PV++AKG+ +A M Sbjct: 241 ARKHLHQEMAMNDTVQNTRKASVVVTNPTHLAIALFYEEDKVPLPVVLAKGEGALAAAMV 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K A E IP+ + LAR+L ++ IP A+L+ Sbjct: 301 KAAREEGIPVMQNIPLARALMVHGSVDQYIPAELVVPTAELL 342 >gi|163789632|ref|ZP_02184070.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7] gi|159875164|gb|EDP69230.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7] Length = 355 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 176/354 (49%), Gaps = 22/354 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL- 66 D KTE S KK+ DA +G P S + +S + ++++L G Y + + L L Sbjct: 5 DGKTEKASPKKLRDARKKGEIPKSPD---LTSAVTFIVFILSATFLGNYILKNSLLYLQN 61 Query: 67 -------ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG--SYLIQRIPV 117 + L DI L T LV+ G L + F S ++Q + Sbjct: 62 YLTAGFSVDGLENDLADIGMKAILFT--------LVLAGPFLAIAFVAAFISSIVQTGFL 113 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + +K +++ G K ++S L +K+ K+ LV + +L + + +++ Sbjct: 114 FSAEPIKFKLSKINPISGFKNMFSKKTLFTLVKNVAKLTLVFWMAYKTLETSIYLIINSS 173 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S I + V ++ + + + L ++D + + L+MSKQEIKDE K+S Sbjct: 174 SIGTEKIFFLMSDLVMELGTQLGVLLLILGLVDYIYQVYDHRKNLRMSKQEIKDEYKESE 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK++++ R + + E + AT +ITNPTH A+A+RY + +++ P++VAKG + Sbjct: 234 GDPQIKSQRRQRYRQLTKGALREVET-ATAVITNPTHLAIAIRYEKGKDEVPIIVAKGAD 292 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A K+R+ A ++PI E +AR+++K V I +P Y+A+A+++ +Y Sbjct: 293 HQAAKIRERAKAFDVPIIENKPVARAMYKSVEIGQPVPIDLYQAIAEILALVYQ 346 >gi|146277693|ref|YP_001167852.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17025] gi|145555934|gb|ABP70547.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17025] Length = 380 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 174/369 (47%), Gaps = 34/369 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 M+E D KTE P+ K+ + A +G+ S+E +F+++ L L+ P + Sbjct: 1 MAEGDDGQEKTEEPTQKRRDQAREDGSIVTSKEVFVFATLAGGLALLVMLQGMLPALVRG 60 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM---------MFGIGS 109 S VL A D+ ++ L L +++ GL++ + +G+G Sbjct: 61 WSGYLVLEPGA------DLDRVMML--RLGQVWREVLLAGLIVSVPLLVVVLLVQYGMGG 112 Query: 110 YLIQRIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 +N + +FK R++ G+KR+ S+ LV K+ K+ L+ + + L Sbjct: 113 --------INFSTKAMAFKASRINPGAGLKRMVSMKALVELGKAIAKVSLLIGVAVLVLR 164 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + ++ P + +++ +L+ +A + LD+ W + +KMS+Q Sbjct: 165 DELAPLDRLWTSAPADAAAVMGVGLIRLVSALLIVLALIGGLDLVWQAWSLTNSMKMSRQ 224 Query: 228 EIKDEIKQSYGNPIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYI 282 E+K+E K++ G+P +K R + + R +E +AT I+TNPTH+A+ALRY+ Sbjct: 225 ELKEESKEANGSPEVKGRMRRMQMEASQNGAKRRAALENVPQATAIVTNPTHFAVALRYV 284 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 E APV++A G+ +A + + + + P LAR+L+ I IP Y AV Sbjct: 285 PGETTAPVILALGKGPMALDIIERGRKAGVGTLRIPVLARALYFTGDIGQEIPDQLYGAV 344 Query: 343 AQLIYKIYH 351 A ++ +Y Sbjct: 345 AAVLAHVYR 353 >gi|153001439|ref|YP_001367120.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS185] gi|304409946|ref|ZP_07391565.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|307302341|ref|ZP_07582099.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] gi|151366057|gb|ABS09057.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS185] gi|304351355|gb|EFM15754.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|306914379|gb|EFN44800.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] Length = 376 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/346 (24%), Positives = 174/346 (50%), Gaps = 17/346 (4%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 P+ +++E A +G S+E + ++ AC Y+L P + + + + + + + Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127 ++ D + + AS + P + ++ + ++ I + + +N + P Sbjct: 70 AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185 ++S G KR++ + LV K K +V + L+ YF + +S++ P ++ Sbjct: 126 SKMSPAAGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 YHA + + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K+R Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKSR 243 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+ Sbjct: 244 VRQMQHELAQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA H+I I P LAR+++ ++ IP + AVAQ++ ++ Sbjct: 304 IARAHDIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349 >gi|160896049|ref|YP_001561631.1| type III secretion exporter [Delftia acidovorans SPH-1] gi|160361633|gb|ABX33246.1| type III secretion exporter [Delftia acidovorans SPH-1] Length = 391 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 180/355 (50%), Gaps = 13/355 (3%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D+ +K+ + +K++ ++G SR+ S + + + +L P I H+ Sbjct: 2 DSSQDKSLPATERKLQKTRSDGQGARSRDLSHLAILGTGALMMLMGAEPLIQ------HL 55 Query: 65 LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI----PVLN 119 +A A Q + + L+ LS L + L+ G+ L+ + +L+ Sbjct: 56 RMALAQQLAFDAHTAKTPALMMERMLSMGSLGLKISLVVAAVTTGAALVSGMLAGGWILS 115 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 L ++P F R++ G+ ++S +V +K V ++ + + ++ + IS+ Sbjct: 116 LKPIQPQFNRLNPLSGLTNLFSKQQMVTVVKMVVMTAIL-SFVAWKFLSSHLAEIAAISS 174 Query: 180 NPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P ++ L + + ++LL + + V+D+ + + S+LKMS +E+K E K+S G Sbjct: 175 QPSAMALSMTGQWLASGVALLLLVVFLMAVIDVPLQAYLFKSRLKMSHEEVKQEHKESDG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP IK++ + R + A RA ++TNPTHYA+ALRY + AP +++KG +L Sbjct: 235 NPQIKSKIRQKQREIADRASVNAVPRADFVVTNPTHYAVALRYDEKTMAAPQVISKGTDL 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++A H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 295 VALKIREVAGAHKIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349 >gi|323171038|gb|EFZ56687.1| flhB HrpN YscU SpaS family protein [Escherichia coli LT-68] Length = 347 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 147/279 (52%), Gaps = 27/279 (9%) Query: 82 FLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 F+LT L + A+ L+ +PG LF+ + P F ++S +GI R Sbjct: 59 FILTLLPMPAAALLSSLVPGGWLFLP----------------KKILPDFSKISPLKGIGR 102 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA----FFTVRK 194 ++S +L K VK ++V ++ +SL N+ + L + A P + + + V + Sbjct: 103 LFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLG-LQALPFKLAMNEGLSLYACVMR 161 Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 +++ +F A ++D+ + + LKM+KQE+K+E K G P +K R + + R Sbjct: 162 NFVILFIFFA---LIDVPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLA 218 Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA +R++A E+ + + Sbjct: 219 MGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIALYIRQVAAENQVEV 278 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E P LARS++ +N IP Y+A+A ++ + K Sbjct: 279 VEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 317 >gi|310823551|ref|YP_003955909.1| type III secretion protein, flhb/hrpn/yscu/spas family [Stigmatella aurantiaca DW4/3-1] gi|309396623|gb|ADO74082.1| Type III secretion protein, FlhB/HrpN/YscU/SpaS family [Stigmatella aurantiaca DW4/3-1] Length = 339 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 12/339 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS-DLHVLLA 67 +KTE P++K++ DA +G P SR S ++ L ++ + G+ + HV+ Sbjct: 2 SKTEKPTAKRLRDARRKGQLPRSRLLSSSATTLGGVLGFTAWAPEGVERLRQWTAHVMRG 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 T E +V L+ +L + LV + + G+G LN+ HV P+ Sbjct: 62 QGTLEGWEAGGWLVLGLSGPALGGA-LVASLAVSLAVAGVG---------LNMEHVAPNL 111 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R+S G KR+ S+ V +K+ + ++ ++ + E L + L H Sbjct: 112 ERISPFAGWKRLLSVRAGVEGLKALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVH 171 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +L+ + + L D + + + L MS++E+K E ++S G+P K ++K Sbjct: 172 LLDRLEPLLLRLSGCLLLLGGADYALARARHFKDLCMSREEVKREYQESEGDPRHKAQRK 231 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 ++ R + +A+ ++ NPTH A+ALRY E +AP LVAK Q A +R A Sbjct: 232 ALHRQLAQGGSARGVRKASAVVINPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEA 291 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IP+ + LARSL + IP Y+A A ++ Sbjct: 292 QRRGIPVVRDVPLARSLIS-YDVGEQIPEELYQAAAAVL 329 >gi|27904722|ref|NP_777848.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395823|sp|Q89AN6|FLHB_BUCBP RecName: Full=Flagellar biosynthetic protein flhB gi|27904119|gb|AAO26953.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 382 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/362 (26%), Positives = 196/362 (54%), Gaps = 20/362 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-IYSVTSDL 62 +D + KTE+P+S +++ + G+ RE L+S ++ + + F+++ I ++ + Sbjct: 3 HDESEEKTESPTSYRLKISKETGHNRYYRE--LYSLLILTITLINFWYNQRLILTLLKRI 60 Query: 63 HVLLASATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVL 118 L + ++ + H ++ +L + + G++ F M+ + +I Sbjct: 61 FYLSFTFNNSIFQNDLFLDHNFLMIFQDNL----ISLLGIIFFPMLIFMFPAMILCCSNF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 N +K +++ G K ++SI ++V+ K+ +KI+ V ++ + +++ YF + F S Sbjct: 117 NFKFIKFDINKLNPILGFKNVFSIKSIVDLFKTVLKIVFVSIVVYLFISK-YFLKVCF-S 174 Query: 179 ANPHSILYHAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +N + Y ++VR + + L +F + ++D+ W + +Y L+M+++E+ DE+K Sbjct: 175 SN-FTFDYILNYSVRTIFLCFLTILIFFIPIIIIDLFWEKYNFYRSLRMTRKEVSDELKN 233 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 GNP IK+R + I S +M+ S++ +I+ NP HYA+A++Y +T AP ++AKG Sbjct: 234 MEGNPRIKSRIRQIMFSISNRRMLSNVSKSDVIVVNPMHYAIAIKYNETNMYAPKILAKG 293 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHK 352 + +A K++KI H+IP SLA L+ + + IP V Y+AVA++ ++KI H Sbjct: 294 IDELAIKIKKIGNNHSIPTLVSHSLAHVLYYRTEVGEYIPSVLYEAVAEVLAWVWKIRHW 353 Query: 353 KI 354 KI Sbjct: 354 KI 355 >gi|39545582|gb|AAR26329.1| AscU [Aeromonas hydrophila] Length = 352 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 176/338 (52%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + ++I+ LI +L S Y + ++L Sbjct: 4 EKTELPTPKKLRDARKKGQVVKSKEV-VSTAIILSLIGMLMAMSD--YYLEHLGKLMLIP 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L + +L +L + L IP L + ++ + S+ Q +L+ +KP K Sbjct: 61 ESHLNLPFTQALNHVLENLMQEMAYLCIPLLGVSVLVVLISHFAQYGFLLSGESIKPDIK 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ EG K+I+SI +L+ F+KS +K+ L+ ++ I++ N +L I Sbjct: 121 KINPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWITIEGNLQALLQLPGCGMSCIPPVL 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK++++ Sbjct: 181 GGMLSQLMAVCAMGFVVIAIADYAFEHYQHTKQLKMSKDEVKREYKEMEGSPEIKSKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + M R+++I+ NPTH A+ +RY + E PV+ K + A ++RKIA Sbjct: 241 FHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKIAE 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 E IP+ + LAR+L++ IN+ IP +A A+++ Sbjct: 301 EEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVL 338 >gi|120609156|ref|YP_968834.1| type III secretion system protein HrcU [Acidovorax citrulli AAC00-1] gi|58700626|gb|AAW81017.1| HrcU [Acidovorax citrulli] gi|120587620|gb|ABM31060.1| type III secretion protein, YscU/HrpY family [Acidovorax citrulli AAC00-1] Length = 352 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + ++L + +L P +Y + V A Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPMLYDRVRRI-VTTAL 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++ ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 61 EQGVRVHSTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGQIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 H+IP+ P LAR+L K +P++ IP ++AV+ Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334 >gi|312602783|ref|YP_004022628.1| type III secretion inner membrane protein SctU [Burkholderia rhizoxinica HKI 454] gi|306431586|emb|CBK52138.1| type III secretion inner membrane protein SctU [Burkholderia rhizoxinica HKI 454] gi|312170097|emb|CBW77109.1| type III secretion inner membrane protein SctU [Burkholderia rhizoxinica HKI 454] Length = 360 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 102/355 (28%), Positives = 167/355 (47%), Gaps = 34/355 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D KTE P+ K++ DA +G S + A++ + +A L+ F+ ++ +H Sbjct: 3 DEKTEEPTEKRLRDARRDGQVAKSTDLTDAAVMCASIAVLVAAASMFTDAFRAL---IHT 59 Query: 65 LLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L T R + F L SL+ +++P + + + Q ++ V Sbjct: 60 TLDFVTTNRSNTMLVASAFKLGRQSLT---IIVPCVAATALCAFAALFAQVGFQISTKPV 116 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA---- 179 P+ V+ GIKRI+S+ +V+ KS +K LV ++ ++T+ I Sbjct: 117 TPNPTAVNPASGIKRIFSLRTVVDMTKSLLKAALVACVM-------WYTIRGLIPLIATS 169 Query: 180 --NPHSILYHAFFTVR-KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P L F+TV K+ L + LD + +++MSK EIK E KQ Sbjct: 170 LYQPLPELSRLFWTVLLKLFSAAALVFIVIAALDFKLQKFLFTRQMRMSKDEIKREYKQQ 229 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSR-----ATIIITNPTHYALALRYIQTENDAPVL 291 G+P +K +K IAR EA R A +I NPTHYA+A+RY E PV+ Sbjct: 230 EGDPQLKGERKRIAR----EWAQEAPPRLRVGLANALIVNPTHYAVAIRYAPEECPLPVV 285 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AKG + A ++R+ A + +PI P +AR+L + V I+ IP ++AVA ++ Sbjct: 286 IAKGHDESAAELRRYAAQARVPIIGNPPIARALHR-VKIDEPIPEALFEAVAAIL 339 >gi|46398249|gb|AAS91803.1| AscU [Aeromonas hydrophila] Length = 352 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 179/341 (52%), Gaps = 9/341 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + ++I+ L+ +L S Y + ++L Sbjct: 4 EKTEQPTPKKLRDARQKGQVVKSKEV-VSTAIILSLVGMLIAMSD--YYLEHLGKLMLIP 60 Query: 69 ATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 A+ L E ++H+V +L + L IP L + ++ + S++ Q +L+ +KP Sbjct: 61 ASHINLPFTEALNHVV---ENLMQEMAYLCIPILAVAVLVVLVSHIAQYGFLLSGESIKP 117 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 K V+ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML + Sbjct: 118 DIKHVNPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWVTIEGNLQAMLQLPGCGMSCVA 177 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK++ Sbjct: 178 PVLGGMMGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSK 237 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + M R+++I+ NPTH A+ + Y + E PV+ K + A ++RK Sbjct: 238 RRQFHQELQSSNMRADVKRSSVIVANPTHIAIGILYERGETPLPVVTLKFTDAQALQVRK 297 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA E IP+ + LAR+L++ IN+ IP +A A+++ Sbjct: 298 IAEEEGIPVLQRIPLARALYRDAQINNYIPADQIEATAEVL 338 >gi|90577372|ref|ZP_01233183.1| flagellar biosynthetic protein [Vibrio angustum S14] gi|90440458|gb|EAS65638.1| flagellar biosynthetic protein [Vibrio angustum S14] Length = 375 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 178/365 (48%), Gaps = 40/365 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ A D KTE + +KI A +G P +++ + + +A +++ F+F Sbjct: 1 MSQSSAQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVF--FYFQ-------- 49 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL---------------LLFMMF 105 A + L + + ++H L + L I L L ++ Sbjct: 50 ------IDAIWQALNGVFKLNMTISHDGLRSPWLAIEALGTSLAIIIQLLLPLFGLILIT 103 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 I S L+ + + P ++ GIKR++S +LV +KS +K+ ++ ++ + Sbjct: 104 AIASSLLIGGWLFYPAGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLY 163 Query: 166 LTENYFTMLDF----ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 L N +L + IL F + + + +LLF ++DI + + + Sbjct: 164 LDANLSRLLGMQNLPLKQGVSLILTILFHGILLMGVALLLF----GLIDIPYQKWEHAKE 219 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 LKM+KQE+K+E K + GNP IK R + I + R K+ +A +A ++I NPTHYA+A++Y Sbjct: 220 LKMTKQELKEEFKSNEGNPEIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKY 279 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 T ++AP +VAKG + A ++ IA +H++ I P L R+++ I AIP Y A Sbjct: 280 DTTLSEAPFVVAKGIDEAAMHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVA 339 Query: 342 VAQLI 346 VA ++ Sbjct: 340 VAHIL 344 >gi|326319086|ref|YP_004236758.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375922|gb|ADX48191.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC 19860] Length = 390 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 187/372 (50%), Gaps = 46/372 (12%) Query: 5 DAPDNKTEAPSS-KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 D+ + P++ +K++ A EG A SR+ S + +L + +P + Sbjct: 2 DSSSQDKQLPATERKLQQAREEGQAARSRDLSHLA-VLGMGAVSTYALAPSLIEHLQRAI 60 Query: 56 -YSVTSDLHVLLASATQ-RKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFG 106 + ++ + +LA+ + ++L+D++ + +LT ++ AS + G Sbjct: 61 AHHLSFNAETVLATGSMLQRLQDMAFVGVAASFAFAVLTTVAAVASAI-----------G 109 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-- 164 G +L PV+ P+F R++ G ++S ++V +K +++ G + + Sbjct: 110 SGGWLFTFKPVM------PNFSRINPLSGFSNLFSKQHMVTVLK---MVLMTGILAAVAW 160 Query: 165 ---SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 S + ML + +P ++ Y A + + + ++LL + ++D+ + S+ Sbjct: 161 SFMSTSIEKIAML-VLQPSPVALRYVAEW-ITGGMALLLLVVFLAALIDVPLQAFFFKSR 218 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 KMS +E+K E KQS G+P +K RQ+ AR + ++A ++ NPTHYA+ALRY Sbjct: 219 QKMSHEEVKQEHKQSEGSPEVKGRQRQRAREIANRASLGNVAKADFVVMNPTHYAVALRY 278 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 + AP +V+KG +L+A K+R++A +H++P+ + P LAR+L+ + IP Y A Sbjct: 279 DEATMGAPQVVSKGTDLLAFKIRELANQHSVPVLQSPMLARALYANAELEQPIPSQLYAA 338 Query: 342 VAQLIYKIYHKK 353 VAQ++ +Y K Sbjct: 339 VAQILAYVYRLK 350 >gi|171316786|ref|ZP_02905997.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] gi|171098044|gb|EDT42860.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] Length = 377 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 100/347 (28%), Positives = 174/347 (50%), Gaps = 20/347 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF----FSP---GIYSVTSD 61 KTE P+ K++ DA +G S E S + ++C+ LL+F FS GI +V Sbjct: 20 EKTELPTPKRLRDARKDGQTSKSTEIS-DTIAMSCVAALLWFAGNHFSDMVRGIVAVA-- 76 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L A Q+ L D S L ++ + A +V+P + + G Q V+ + Sbjct: 77 LEFSHPDAEQKAL-DAS-----LYNIGMHAISVVLPCVFAGAIAATGISFAQVGAVIAMK 130 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + P + V+ G+KR++S+ + +K+ VK +LVGT++ +++ + ++ + P Sbjct: 131 PIVPKLENVNPAAGLKRMFSLRTAIELIKTIVKALLVGTVMWFAVSALFPLVVGSLH-QP 189 Query: 182 HSILYHAFFTVRKVLIMI-LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L F+ + LI I + + ++D+ + ++KMSK +IK E KQ G+P Sbjct: 190 LAGLSVMFWELWLKLIAIACIAFLIIGIVDLKLQKVMFIRQMKMSKDDIKREHKQQEGDP 249 Query: 241 IIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 +IK + +AR +A A +++ NPTHYA+ALRY E+ P +V KG + Sbjct: 250 LIKGERLRLARELATSAPEKKAVGLANVVLVNPTHYAVALRYAPHEHPLPRVVEKGMDAS 309 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +R A E P+ P +AR+L+K V I +P ++ VA ++ Sbjct: 310 AALIRHYAEELGTPVIGNPPVARALYK-VDIGGPVPRELHETVAAIL 355 >gi|323493113|ref|ZP_08098244.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546] gi|323312584|gb|EGA65717.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546] Length = 375 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 181/348 (52%), Gaps = 6/348 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58 MSE + D KTE S++KI+ A +EG P ++E F++ + + ++F+S I++ Sbjct: 1 MSEQSSQD-KTEQASAQKIKKARDEGQIPRAKE---FTTAVIFVAVAVYFYSQISAIWNS 56 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + S ++ L + ++ L H +L++P ++ ++ + S LI + Sbjct: 57 IAGIFRYNMSLNKQDLANPLQMIEQLGHSLGVVIQLLLPLFVVIIVVAVASSLILGGWMF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +V P +++ GIKR++S + V +KS K+ ++ ++ L + +L Sbjct: 117 RPANVMPKLSKLNPLSGIKRMFSSRSFVELLKSTFKVAVIFALLYAYLNNHLQPLLGMQM 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + L+++ + V+DI + + +L+M+KQEIK+E K + G Sbjct: 177 LSLEQGVVKVMMILFDGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQEIKEEYKNNEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 P +K R + I + R K+ + A ++ITNPTHYA+A++Y ++DAP +VAKG + Sbjct: 237 RPEVKQRIRQIQQQFARRKIEKMVPTADVVITNPTHYAVAVKYDPAQSDAPFVVAKGVDE 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +++IA E+ + I P L RS++ I A+P Y AVA ++ Sbjct: 297 TAMHIQRIARENQVEIVNSPPLTRSIYHTTAIEQAVPSQLYIAVAHIL 344 >gi|56695095|ref|YP_165442.1| flagellar biosynthesis protein FlhB [Ruegeria pomeroyi DSS-3] gi|56676832|gb|AAV93498.1| flagellar biosynthetic protein FlhB [Ruegeria pomeroyi DSS-3] Length = 362 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 21/357 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ P+ +K++ A +G S + S+ ++ L+ L + I + + Sbjct: 1 MSGQDDDSDKSYEPTPQKLQKAREKGEVAKSADLSVVAAYAGLLLALSALGAASITKLGT 60 Query: 61 DLHVLLASATQRKLEDISHIVFL------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 L VL+ A + +S +VF + L + ++P L+ I S + QR Sbjct: 61 ALTVLIGQA-----DGLSRLVFEGRAVGPVGGLMGTVGASILPWFLVPAAAVILSVVAQR 115 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V+ + + P R+S+ + K + L F KSFVK++L + + N + Sbjct: 116 AFVMAPSKLVPKISRISILQNAKNKFGRGGLFEFAKSFVKLLLYSVCLGFFIKLN---LS 172 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG-----WSYHQWYSKLKMSKQEI 229 D +S+ R L+M +F+ L IG W + + K MS++E+ Sbjct: 173 DIVSSAGMEARQSVLLMAR--LLMRFMFLVATVALVIGAIDYLWQHAEHIRKNMMSRKEL 230 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 DE K + G+P +K +++ + ++M+ A ++I NPTHYA+AL++ + AP Sbjct: 231 MDETKDAEGDPHMKQKRRQKGQEIAMNQMLADVPGADVVIVNPTHYAVALKWSRLPGAAP 290 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 V VAKG + +A +R+ A E +PI +P AR+L V I I Y+ VA I Sbjct: 291 VCVAKGVDEVAAAIRRSAAEAGVPIHSDPPTARALHAGVEIGQEISEEHYRPVAAAI 347 >gi|241763666|ref|ZP_04761716.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN] gi|241367141|gb|EER61507.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN] Length = 384 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/350 (27%), Positives = 163/350 (46%), Gaps = 23/350 (6%) Query: 15 SSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 + +K++ A +G SR+ S + + ACL+ L T L + A Sbjct: 12 TERKLQKAREDGQGARSRDLSHLAILGAGAACLLVL-----------TPQLMEHMQRALG 60 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI---GSYLIQRIP----VLNLNHVK 124 ++L S V + +V+ GL+ +F + G+ LI I + + + Sbjct: 61 QQLRFDSSTVMAPASMLTRLKDMVMVGLVASAVFAVLTSGAALISAIGAGGWIFSAKPIT 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ G ++S + N K V + + + + N + + P + Sbjct: 121 PQFNRLNPISGAANLFSKQQMANVAK-MVLMTAILSFVAWKFMGNSIDSMAMLVLQPSPL 179 Query: 185 -LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L H + ++LL + V+D+ + + S+LKMS +E+K E K+S GNP K Sbjct: 180 ALRHVAQWLTSGASLLLLVVFLAAVIDVPLQAYFFKSRLKMSHEEVKQEHKESDGNPHTK 239 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R + A +A ++ NPTHYA+AL+Y AP ++A+G +LIA K+ Sbjct: 240 GRIRQRQREMADRASVGAVPKADFVVMNPTHYAVALKYDDKTMSAPQVIARGTDLIAFKI 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R +A H IP+ + P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 300 RDLAGAHGIPVLQSPMLARALYAHAELDQAIPATLYTAVAQVLAYVYRLK 349 >gi|321472934|gb|EFX83903.1| hypothetical protein DAPPUDRAFT_315303 [Daphnia pulex] Length = 217 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 122/203 (60%), Gaps = 1/203 (0%) Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 +V F+K F K++++ TI + F F S P I+ A + ++L+ ++ + Sbjct: 1 MVEFLKGFGKLVIILTIAFFIFGKTNFPFQPFGSLAPQVIMPEASRLILQILLSLIAAMG 60 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM-EATS 263 L LD G+ + + + +L MS+QE+KDE K + + +RQ+ + + + + + + Sbjct: 61 VLAALDYGYQWFRVFRELYMSRQELKDEHKDLEKDASVISRQRQMQKELAQMRSLGDKIP 120 Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323 +AT++ITNPTHYA+ALR+ E AP ++AKG + +A+++R++A H +P+ E P LA++ Sbjct: 121 KATVVITNPTHYAVALRWNPREMSAPQVIAKGTDRVAQRIRELAQHHFVPLVENPPLAQA 180 Query: 324 LFKQVPINSAIPPVFYKAVAQLI 346 L+K V I I P Y+AV+++I Sbjct: 181 LYKSVKIGQEISPEHYRAVSEVI 203 >gi|326315337|ref|YP_004233009.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372173|gb|ADX44442.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 352 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + ++L + +L P +Y + V A Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPLLYDRVRRI-VTTAL 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++ ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 61 EQGVRVHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGKIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 H+IP+ P LAR+L K +P++ IP ++AV+ Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334 >gi|283786649|ref|YP_003366514.1| T3SS structural protein EscU [Citrobacter rodentium ICC168] gi|282950103|emb|CBG89738.1| T3SS structural protein EscU [Citrobacter rodentium ICC168] Length = 345 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 166/347 (47%), Gaps = 21/347 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D +G+ S E ++A + L+ F +Y + + V A Sbjct: 3 EKTEKPTPKKIRDLKKKGDVTKSEE------VMAAVQSLILFSFFSLYGASFFIEV--AG 54 Query: 69 ATQRKLEDISHIVFLLTHLSLSASR----LVIPGLLLFMMFGIGSYLIQRIP-VLNLNHV 123 + ++ H L A L + ++LF+ G + + +I + + + Sbjct: 55 VVNTTINSLNEPFLYSIHEILGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKI 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KPS +++S++ +K I+S+ ++ +KS K++++ I ++F N + Sbjct: 115 KPSAQKISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQ 174 Query: 184 IL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L + F + VL LLF +V D + H+ K+KMSK E+K E K + GN Sbjct: 175 TLVIIAFFIFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGN 230 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK ++ + + ++T+I+ NPTH A+ L Y E P+++ ++ Sbjct: 231 PEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAK 290 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++ K+A +NIP+ E+ LARSL+K + I F++ VAQLI Sbjct: 291 ALQIIKLAELYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|148553141|ref|YP_001260723.1| flagellar biosynthesis protein FlhB [Sphingomonas wittichii RW1] gi|148498331|gb|ABQ66585.1| type III secretion exporter [Sphingomonas wittichii RW1] Length = 379 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 98/362 (27%), Positives = 180/362 (49%), Gaps = 24/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTEAP+ K+ +DA +G+ SRE + L ++ + G +++ + Sbjct: 1 MAEGPEDDEKTEAPTPKRRQDAAEKGDVLQSRE---LGTALVMVVGAGWIAIAGPWAMAA 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L +L++A I + L L++ A+ + LL + + L Sbjct: 58 -LKRMLSNALSFDAGAIENFDPLSAALAMVATVALPLLLLFALTLAAAIAAPAMLGSLGF 116 Query: 121 NHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 FK L G+KRI+ + L+ KS +KI+ +G + Y+ ++D I+ Sbjct: 117 RWSALGFKANKLNPMAGLKRIFGMQGLIELGKSLLKILALGAV-------GYWLLMDRIA 169 Query: 179 A-------NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 A + + L T ++++ L +A + D+ Q +L+MSKQEIK+ Sbjct: 170 AIVTMGQQDLRTALDSLGSTFVFAVLVMTLALAVVAGADVPMQMFQRGKRLRMSKQEIKE 229 Query: 232 EIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 E KQ+ G+P +K RQK +A + + +A AT+++TNPTH+A+ALRY + AP Sbjct: 230 ESKQTEGSPELKAAIRQKQMAAAMGSAR--KAVVEATVVLTNPTHFAVALRYRPGFDTAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V++A+G+ A+ +R++A E+++P+ P L R+++ I + AVA ++ + Sbjct: 288 VVLARGRGATAQAIRELATENSVPMLHYPQLTRAIYYTSRSGQVIREDLFIAVAAILAFV 347 Query: 350 YH 351 ++ Sbjct: 348 FN 349 >gi|114762169|ref|ZP_01441637.1| flagellar biosynthetic protein FlhB [Pelagibaca bermudensis HTCC2601] gi|114545193|gb|EAU48196.1| flagellar biosynthetic protein FlhB [Roseovarius sp. HTCC2601] Length = 330 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 133/254 (52%), Gaps = 7/254 (2%) Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 L +PG ++ + R V + + P R+S E + Y L F+KSFV Sbjct: 66 LAVPGAVVLC-----ALFATRGLVFAPSRLAPKASRLSPMENARNKYGRRGLFEFLKSFV 120 Query: 154 KIILVGTIITISLTENYFTMLDFI-SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 K+ + ++ + L+ Y ++ + A P + ++ + I ++ + + +D Sbjct: 121 KLTVYSVVLGLFLSSRYDLIIGVLRGAAPDAAELMLNLMLQLLGIAAVVAL-CIGAVDYL 179 Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 W + + +MS++E++DE K++ G+P+ K ++++ A+ + +MM RA ++I NP Sbjct: 180 WQRAEHLRRNRMSQKELRDEHKEAEGDPMFKQQRRARAQEIAQTQMMADVPRADVVIVNP 239 Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 +HYA+AL + + DAP+ VAKG + IA+++R++A + +P+ +P AR+L I Sbjct: 240 SHYAVALSWSRKPGDAPICVAKGVDEIARRIREVAEDAGVPLHSDPPTARALHATTRIGE 299 Query: 333 AIPPVFYKAVAQLI 346 I P Y+ VA I Sbjct: 300 QIAPEHYRPVAAAI 313 >gi|330809227|ref|YP_004353689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377335|gb|AEA68685.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 357 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 99/354 (27%), Positives = 175/354 (49%), Gaps = 27/354 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 +K+E + K+E+A +G P R L S I+ L+ L FS Y + S ++A Sbjct: 5 QDKSEEATPYKLEEARKKGQVP--RSPDLLSFIM--LLTFLMVFSAIAYPLAS----VIA 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLL----LFMMFGIGSYLIQRIPVLNL 120 + T L + + +L R V+ GLL ++ I + L+ PV ++ Sbjct: 57 AHTHWWLGNAGQLGQGFGYLGEQGGYSLRQVVYGLLPLIGALVLMAILTNLLFSGPVFSM 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP FKR+ +G+K+++S V +K VK L ++ +L + + Sbjct: 117 TALKPDFKRLHPIQGLKKLFSRRMFVELIKVLVKGALFSLVLYYLFQSVLPQLLGMATIS 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTV-----LDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 P + K L+M L F + DI +S ++ +++MS++E KDE ++ Sbjct: 177 PLELPQAG-----KQLLMQLGFTVLAVMAAAALFDIWYSRREFGRQMRMSRRETKDEHRR 231 Query: 236 SYGNPIIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P ++ ++K I ++ ++ + A +IITNPTHYA+AL+Y + AP ++A Sbjct: 232 REGDPEVRAKRKGIQQALLKKAAALGQVKDADVIITNPTHYAVALQYRPSSMLAPKVLAM 291 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 G+ L A+++ +A +H +PI P LAR+L ++SAIP VA+ IY+ Sbjct: 292 GRGLHARRICHVARKHQVPILRRPPLARALHALARVDSAIPDSTQADVAR-IYR 344 >gi|154175036|ref|YP_001408825.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus 525.92] gi|112803672|gb|EAU01016.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus 525.92] Length = 139 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 89/127 (70%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSKQE+KDE KQ G+P +K R + + + +MM+ +A ++ITNPTHYA+A+RY + Sbjct: 1 MSKQEVKDEYKQMEGDPQVKGRIRRMQMQAAKRRMMQNVPQADVVITNPTHYAVAVRYDK 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +++ APV++AKG +++A ++RKIA EH + I+E P LAR L++ + IP ++AVA Sbjct: 61 SKDSAPVILAKGVDMMALQIRKIALEHGVQIYENPPLARELYRVCEVEDTIPAELFRAVA 120 Query: 344 QLIYKIY 350 +++ +Y Sbjct: 121 EVLSFVY 127 >gi|89111188|dbj|BAE80277.1| HrcU [Acidovorax avenae subsp. avenae] Length = 352 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + ++L + +L P +Y + V A Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPLLYDRVRRI-VTTAL 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++ ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 61 EQGVRVHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 H+IP+ P LAR+L K +P++ IP ++AV+ Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334 >gi|15639702|ref|NP_219152.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp. pallidum str. Nichols] gi|189025940|ref|YP_001933712.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp. pallidum SS14] gi|6225351|sp|O83710|FLHB_TREPA RecName: Full=Flagellar biosynthetic protein flhB gi|3323017|gb|AAC65681.1| flagellar biosynthetic protein (flhB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018515|gb|ACD71133.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum SS14] Length = 376 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 176/352 (50%), Gaps = 21/352 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIY-SVTSD 61 + ++E P+ K+ A EG P S++ + LF+S LF +P I Sbjct: 25 EGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTS------LFLLAPFILRECIGV 78 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NL 120 L AT +++ + + +L +P + ++ G+ + ++Q VL ++ Sbjct: 79 LRFFFTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSV 134 Query: 121 NHVKPSFKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++P FK++S +R + +S L N +KS +KI + + ++ + F + + Sbjct: 135 KSIRPQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLL 194 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + +++ KVL+ + L + ++ D + Q+ LKMS+QE+K+E+K+ Sbjct: 195 GVSLTQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQE 254 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P++++ + +S +R T A ++ITNPTH+A+A++Y AP +VAKG + Sbjct: 255 GDPLVRSYVRKQMQSLVRESARNTTD-ADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSD 313 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +++++A E I I E LAR+L+ QV I +P ++ A+ + K+ Sbjct: 314 GTAYRIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYFNALVLIFTKL 365 >gi|54124949|gb|AAV30217.1| AscU [Aeromonas hydrophila] Length = 352 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 180/343 (52%), Gaps = 11/343 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA N+G S+E + ++I+ L+ +L S Y + ++L Sbjct: 3 GEKTEQPTAKKLRDARNKGQVVKSKEV-VSTAIILSLVGMLMAMSD--YYLEHLGKLMLI 59 Query: 68 SATQRKL---EDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L + ++H+V LL L+ L IP L + + + S++ Q +L+ + Sbjct: 60 PESHLNLPFSQALNHVVENLLQELAY----LCIPILAVSALVVLVSHIAQYGFLLSGESI 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML Sbjct: 116 KPDIKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIEGNLQAMLQLPGCGMSC 175 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I + +++ + + + + D + +HQ +LKMSK E+K E K+ G+P +K Sbjct: 176 IPPVLGGMLGQLMAVCAMGFVVIAIADYAFEHHQHIKQLKMSKGEVKREYKEMEGSPEVK 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++++ + M R+++I+ NPTH A+ +RY + E PV+ K + A + Sbjct: 236 SKRRQFHQELQPSNMRADVKRSSVIVANPTHIAIGIRYGRGETPLPVVTLKFTDAQALLV 295 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KIA E IP+ + LAR+L++ IN+ IP +A A+++ Sbjct: 296 CKIAEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVL 338 >gi|85710192|ref|ZP_01041257.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1] gi|85688902|gb|EAQ28906.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1] Length = 378 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 173/361 (47%), Gaps = 33/361 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + + + P+ K+ DA +G+ S+E + ++++A +++ P + Sbjct: 1 MSEETNGEKRFD-PTPKRRSDAAKKGDVLRSKEVAT-AAVMAAGTFMILIIGPWLLDSME 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP----GLLLF-------MMFGIGS 109 + L D + + S A ++ P GL++ M+ G G Sbjct: 59 RVARAAFGFDPAGLGDFAPGAMI----SQIAQEILPPIFAIGLVVIAVTVGSQMVLGEGR 114 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++ Q ++KP R++ G+KRI+ + L+ KS +K++L+G+I ++ + Sbjct: 115 WVPQ--------NLKPKPSRINPLSGLKRIFGMQGLIELGKSILKLLLLGSIAAWWVSGS 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 ML + L A+ + ++ M+++ + + V+D Q +LKMS Q++ Sbjct: 167 LDGMLGLGRGTLDAQLNFAWDAMTTLVAMLVVGLLVIAVIDYPLQRLQRDKRLKMSFQDL 226 Query: 230 KDEIKQSYGNPIIK----NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KDE KQS G+P +K RQ+ ++R I M EA I+ NP H+A+AL Y Sbjct: 227 KDENKQSEGSPEMKMARRQRQRDLSRGSIGKAMKEAQ----FIVVNPMHFAVALTYDPNL 282 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 APV++AKG+ A MR++A E +P+ P LAR+L+ + + Y A+A L Sbjct: 283 APAPVVLAKGRGETAMAMRELASEMELPVLHYPQLARALYFTTRADQMVREELYVAIAAL 342 Query: 346 I 346 + Sbjct: 343 V 343 >gi|257457600|ref|ZP_05622767.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] gi|257444986|gb|EEV20062.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] Length = 383 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 97/356 (27%), Positives = 180/356 (50%), Gaps = 26/356 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTSDLHV 64 + +TE P+ KI A EG S++ + +L LI+L FF + L Sbjct: 29 EGRTEDPTDYKIRKAREEGRVAKSQDINAALVLLFPAGALIFLSSFF---LEECMEILRF 85 Query: 65 LLASATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118 +TQ + I +F+ L +L +P L+ M+ G+ + ++Q L Sbjct: 86 FFLRSTQSDINSGIWFGIFVQYFL-----KLALPLALIAMLAGVIANILQNNGFLFSTKP 140 Query: 119 ---NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 N + P+F R R ++S L NF KS K++++ + + + N ++ Sbjct: 141 IQPQFNKIVPNFMRFFKRA----LFSAEGLFNFAKSLTKVVVLVFVSFLMIRANLPHFIE 196 Query: 176 FISAN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S + P ++ + A + + LL + L + D + Q+ LKM+KQEIK+E K Sbjct: 197 LLSVSFPQAVFFIAGLGAKLLATAALL-LLILAIPDYFFQRKQFIDSLKMTKQEIKEEYK 255 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P +K R + ++ + + +A ++ITNPTH+A+A+++ AP+++AK Sbjct: 256 ELEGDPQVKGRIRQQMQAILSQNAIRNVPKADVVITNPTHFAIAMQWDSKTMAAPMVLAK 315 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 G + +A++++ IA EHNIP+ E LAR+L+ +V I IP +Y+A++ + ++Y Sbjct: 316 GADAMAQRIKAIAREHNIPLIENKPLARALYAKVQIGDIIPEEYYRALSLVFAEVY 371 >gi|89111155|dbj|BAE80245.1| HrcU [Acidovorax avenae subsp. avenae] Length = 352 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + ++L + +L P +Y + V A Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPLLYDRVRRI-VTTAL 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++ ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 61 EQGVRVHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFSKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFVRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 H+IP+ P LAR+L K +P++ IP ++AV+ Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334 >gi|1216382|gb|AAB00549.1| FlhB' [Treponema pallidum] Length = 366 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 174/351 (49%), Gaps = 21/351 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIY-SVTSD 61 + ++E P+ K+ A EG P S++ + LF+S LF +P I Sbjct: 25 EGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTS------LFLLAPFILRECIGV 78 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NL 120 L AT +++ + + +L +P + ++ G+ + ++Q VL ++ Sbjct: 79 LRFFFTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSV 134 Query: 121 NHVKPSFKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++P FK++S +R + +S L N +KS +KI + + ++ + F + + Sbjct: 135 KSIRPQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLL 194 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + +++ KVL+ + L + ++ D + Q+ LKMS+QE+K+E+K+ Sbjct: 195 GVSLTQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQE 254 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P++++ + +S +R T A ++ITNPTH+A+A++Y AP +VAKG + Sbjct: 255 GDPLVRSYVRKQMQSLVRESARNTTD-ADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSD 313 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +++++A E I I E LAR+L+ QV I +P ++ + Y+ Sbjct: 314 GTAYRIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYFNCFSADFYQ 364 >gi|145284335|gb|ABP51916.1| AscU [Aeromonas veronii bv. sobria] Length = 352 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP------GIYSVTSDL 62 KTE P+ KK+ DA +G S+E + ++I+ L+ +L S G + + Sbjct: 4 EKTEQPTPKKLRDARQKGQVVKSKEV-VSTAIILSLVGMLMAMSDYYLEHLGKLMMIPES 62 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 H+ L + ++H+V +L + L IP L + ++ + S+ Q +L+ Sbjct: 63 HINLPFT-----QALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGES 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML Sbjct: 115 IKPDIKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMS 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P I Sbjct: 175 CITPVLGGMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++ + M R+++I+ NPTH A+ +RY + E PV+ K + A + Sbjct: 235 KSKRRQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQ 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +RKIA E IP+ + LAR+L++ +N+ IP +A A+++ Sbjct: 295 VRKIAEEEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVL 338 >gi|170737009|ref|YP_001778269.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] gi|169819197|gb|ACA93779.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] Length = 379 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 166/357 (46%), Gaps = 25/357 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG------ 54 MSE D KTE + +K+ A EG SR+ IL L L+ +P Sbjct: 1 MSEQQTGD-KTEKATPQKLRKARMEGQVARSRDIGTCVGILVAL-KLIVVLTPAWLVELK 58 Query: 55 -IYSVT-SDLHVLLASATQRKLEDISHIVF---LLTHLSLSASRLVIPGLLLFMMFGIGS 109 I++++ +DL + +L + ++F +L + A +P ++ G Sbjct: 59 HIFALSFADL------SGDDRLGNAVSMLFPAAVLLMCKMLAPLAAVPAGIIVASLIPGG 112 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 ++I ++ P R++ G+KR+ S + + F + +K +++ + I N Sbjct: 113 WIISH------KNIMPKLNRLNPLSGLKRLVSGKHYMQFGTTVLKALVLMATLFIVCRSN 166 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + A L + + I ++DI + +MSK++I Sbjct: 167 LSGFIRLQGAPLADALTGGANLFLSSAVTLSCIITVFALVDIPVQQIIFKRGQRMSKRDI 226 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E+KQS G P +K+R + I R R + + A +++ NPTHYA+AL+Y T AP Sbjct: 227 KEEMKQSEGRPEVKSRIRQIQRQLARQGIRKTVPTADLVVMNPTHYAVALKYDVTRAQAP 286 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +VAKG + +A +R +A HN+ + E P LAR+++ +N IP Y+AVAQ++ Sbjct: 287 YVVAKGVDEVALFIRDVARGHNVEVLELPPLARAIYHTSQVNQQIPAELYRAVAQVL 343 >gi|15723910|gb|AAL06357.1|AF311901_9 EscU [Citrobacter rodentium] Length = 345 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 21/347 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D +G+ S E ++A + L+ F +Y + + V A Sbjct: 3 EKTEKPTPKKIRDLKKKGDVTKSEE------VMAAVQSLILFSFFSLYGASFFIEV--AG 54 Query: 69 ATQRKLEDISHIVFLLTHLSLSASR----LVIPGLLLFMMFGIGSYLIQRIP-VLNLNHV 123 + ++ H L A L + ++LF+ G + + +I + + + Sbjct: 55 VVNTTINSLNEPFLYSIHEILGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKI 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KPS +++S++ +K I+S+ ++ +KS K++++ I ++F N + Sbjct: 115 KPSAQKISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQ 174 Query: 184 IL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L + F + VL LLF +V D + H+ K+KMSK E++ E K + GN Sbjct: 175 TLVIIAFFIFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVEREAKDTDGN 230 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK ++ + + ++T+I+ NPTH A+ L Y E P+++ ++ Sbjct: 231 PEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAK 290 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++ K+A +NIP+ E+ LARSL+K + I F++ VAQLI Sbjct: 291 ALQIIKLAELYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|325917015|ref|ZP_08179254.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937] gi|325536766|gb|EGD08523.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937] Length = 357 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 165/359 (45%), Gaps = 49/359 (13%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFF 50 D KTE P+ KK++DA +G PIS + S F + L+ + F Sbjct: 3 DEKTEKPTEKKLQDARRDGEIPISPDVTAAAVLLAALLVMKLAGSYFVEHMNALVSIGFD 62 Query: 51 FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 F+ + T D A+A R L + + + L +P ++ + G+ Sbjct: 63 FT----ANTRD-----ATALNRAL----------ARIGIQGALLTLPFVVACLAAGLIGT 103 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 +Q +L V P F ++ G+++++S+ +L+N +K +K ++G ++ L Sbjct: 104 FLQTGLNASLKPVTPKFDSLNPVNGVQKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALM 163 Query: 171 FTMLDFISANP----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKM 224 T++ ++ P I + A + + +++ + + WS W +M Sbjct: 164 PTIIG-LAYQPVPDIAQIGWRALGILSALAVLVFVLVGAAD-----WSIQHWLFIRDKRM 217 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 SK E K E K+S G+P +K ++K A+ + E ++A +++ NPTHYA+AL Y Sbjct: 218 SKDEQKREHKESEGDPEVKGKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPD 277 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 P +VAKG + A ++R A+ IPI P LAR+L V + A+P ++ VA Sbjct: 278 GFGLPQVVAKGVDDGALELRAYAHNQGIPIVANPPLARALH-LVELGEAVPESLFETVA 335 >gi|146278644|ref|YP_001168803.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC 17025] gi|145556885|gb|ABP71498.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17025] Length = 359 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 175/348 (50%), Gaps = 6/348 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D ++K PS +K+E+A +G P S++ +S L+ L I + Sbjct: 1 MSEGD--EDKPHEPSQRKLEEARRKGELPKSQDLVTAASYGGLLLAALGLGQGAIQRMGD 58 Query: 61 DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 LL A + L D + + L +S V+P + + + + + QR V+ Sbjct: 59 MGTSLLGQADRFSTLLSDKAQP--QVGGLLVSVLLTVLPFFAIPALAAVAALVAQRALVV 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + P +R+S G + + N L F KS VK++LV + + +T + MLD ++ Sbjct: 117 APTKLAPKTERISPVSGFRNRFGRNGLFEFAKSLVKLLLVAVVFALFITFHMAGMLDMLA 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P + F + + L +++L + ++D W + + +MS++E+ DE K + G Sbjct: 177 MAPGLAVGRMFMLMLEFLAIVVLLSGGIGLIDYFWQRAEHLRRHRMSRKELTDEAKDAEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K +++ A ++M++ A +++ NPTHYA+ALR+ + + AP+ VAKG + Sbjct: 237 DPHVKAQRRQKAMEIATNRMLQDVVGADVVVVNPTHYAVALRWKRGDRRAPLCVAKGTDE 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA ++R+ A E +PI +P AR+L V + I P YKAVA I Sbjct: 297 IAARIRERAAEAGVPIHRDPPTARALHAAVRVGEEIRPEHYKAVAAAI 344 >gi|260778657|ref|ZP_05887549.1| type III secretion inner membrane protein HrpY [Vibrio coralliilyticus ATCC BAA-450] gi|260604821|gb|EEX31116.1| type III secretion inner membrane protein HrpY [Vibrio coralliilyticus ATCC BAA-450] Length = 350 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 169/349 (48%), Gaps = 25/349 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIY-----SVTS 60 KTE P+ K++ DA +G S E + L Y + I+ ++TS Sbjct: 3 EKTEKPTQKRLRDARKKGQVIKSNEIVTGFQMAVILGYFIIEGQGMMEAIWKMIDLAITS 62 Query: 61 -DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVL 118 DL + +A+ T ++ V++L I GL+ ++ + S ++Q PV Sbjct: 63 IDLPLKVAAETV-----VAAFVYILIRF--------IAGLVFILVITVAFSCMVQTGPVW 109 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +KPSF +V++ K I+S+ +L K+ +KI LV +++ L + M ++ Sbjct: 110 ASESLKPSFNKVNVINNAKNIFSMKSLFELCKNMLKI-LVLSLVFYYLLHQHVNMFQYLP 168 Query: 179 ANPHSILYHAFFTVRKVLI-MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 FT+ K L L+ +V D + + Q +LKMSK++ K E K++ Sbjct: 169 TCGVDCGVEIIFTLIKWLWGAFLVCYLVFSVGDYAFVHFQTMKQLKMSKEDTKQEYKETE 228 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K +++ + R ++ ++T+I+ NPTH A+ L Y E P+++ K Q Sbjct: 229 GNPEVKQKRRELQRETANGSLVSNVKKSTVIVRNPTHIAVCLYYQPGETPLPLVLDKAQE 288 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A + ++A +H +P+ E LAR+L+ QV IP ++ VA+L+ Sbjct: 289 HMALHVVEMAEKHEVPLVENIPLARALYHQVEPGQVIPESLFEPVAELL 337 >gi|120613048|ref|YP_972726.1| type III secretion exporter [Acidovorax citrulli AAC00-1] gi|120591512|gb|ABM34952.1| type III secretion exporter [Acidovorax citrulli AAC00-1] Length = 390 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 185/372 (49%), Gaps = 46/372 (12%) Query: 5 DAPDNKTEAPSS-KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 D+ + P++ +K++ A EG A SR+ S + IL ++ +P + Sbjct: 2 DSSSQDKQLPATERKLQKAREEGQAARSRDLSHIA-ILGMGAVSIYALAPSLIEHLQQAI 60 Query: 56 -YSVTSDLHVLLASATQ-RKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFG 106 + ++ + + A+ + ++L+D++ + LLT ++ AS + G Sbjct: 61 AHHLSFNAETVHATGSMLQRLQDMTFVGLAASFAFALLTTVATVASAI-----------G 109 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-- 164 G ++ PV+ P+F R++ G ++S +V +K +++ G + + Sbjct: 110 SGGWIFTFKPVM------PNFTRLNPISGFANLFSKQQMVTVLK---MVLMTGILAAVAW 160 Query: 165 ---SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 S + ML + +P ++ Y A + + + ++LL + ++D+ + S+ Sbjct: 161 SFMSTSIEKIAML-VLQPSPVALRYVAEW-ITGGMALLLLVVFLAAIIDVPLQAFFFKSR 218 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 KMS +E+K E KQS G+P +K RQ+ AR + +A ++ NPTHYA+ALRY Sbjct: 219 QKMSHEEVKQEHKQSEGSPEVKGRQRQRARDIASRASLANVPKADFVVMNPTHYAVALRY 278 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 + AP +V+KG +L+A K+R++A +H++P+ + P LAR+L+ + IP Y A Sbjct: 279 DEATMGAPQVVSKGTDLLAFKIRELANQHSVPVLQSPMLARALYANAELEQPIPAQLYAA 338 Query: 342 VAQLIYKIYHKK 353 VAQ++ +Y K Sbjct: 339 VAQILAYVYRLK 350 >gi|208434682|ref|YP_002266348.1| flagellar biosynthetic protein [Helicobacter pylori G27] gi|208432611|gb|ACI27482.1| flagellar biosynthetic protein [Helicobacter pylori G27] Length = 335 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 23/232 (9%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 94 IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFLG 142 Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + A ++ L+ L L +D+ Q+ + LKM+KQE+KD Sbjct: 143 ELNHAALLNLQGQLLWFKNKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKD 202 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+ Sbjct: 203 EYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPVV 261 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 VAKG + +A +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA Sbjct: 262 VAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 313 >gi|145301466|ref|YP_001144305.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449] gi|38201232|emb|CAD56767.1| ascU protein [Aeromonas salmonicida subsp. salmonicida] gi|66947955|emb|CAE83092.1| AscU protein [Aeromonas salmonicida subsp. salmonicida] gi|142856348|gb|ABO92557.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 352 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/344 (26%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP------GIYSVTSDL 62 KTE P+ KK+ DA +G S+E + ++I+ L+ +L S G + + Sbjct: 4 EKTEQPTPKKLRDARQKGQVVKSKEV-VSTAIILSLVGMLMAMSDYYLEHLGKLMMIPES 62 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 H+ L + ++H+V +L + L IP L + ++ + S+ Q +L+ Sbjct: 63 HINLPFT-----QALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGES 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML + Sbjct: 115 IKPDIKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMN 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P I Sbjct: 175 CITPVLGSMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++ + M R+++I+ NPTH A+ +RY + E PV+ K + A + Sbjct: 235 KSKRRQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQ 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +RKIA + IP+ + LAR+L++ +N+ IP +A A+++ Sbjct: 295 VRKIAEDEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVL 338 >gi|32490783|ref|NP_871037.1| hypothetical protein WGLp034 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165989|dbj|BAC24180.1| flhB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 385 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 177/369 (47%), Gaps = 35/369 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D + K E P+ +++ A ++GN P SRE + FS ++ ++L +F+ ++ Sbjct: 1 MSNKDELE-KQEDPTPNRLKKARSKGNIPRSRELTSFSILI--FGWILIWFTGN--NLLD 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI----------------PGLLLFMM 104 + V L KL HI ++L ++ L + + GLL + Sbjct: 56 KIIVELKKNLNFKLYLYEHINYILVNIYLISKKFFFIIFPIIFIIMIITIISSGLLGGWV 115 Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 F S LN++ F R++ + I RI+S N + K+ K + Sbjct: 116 FSKKS--------LNID-----FSRLNPYKNISRIFSKNVFIEMAKTLFKFFFMLFSCIF 162 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 L F + D N + + + + K + +I+L + D + + L+M Sbjct: 163 YLWHTRFQISDLSDNNYSNAIKNCILIISKCVFVIILSSIPIVFFDSIFQLFTFKKNLRM 222 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 SK+E++DE K++ GNP +K+ + R +MM+ ++ +II NPT+YA+ L+Y + Sbjct: 223 SKKEVQDENKENEGNPQLKHYIRKKQRHIYNMRMMQNVEKSDVIIVNPTNYAVGLKY-EK 281 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 APVL+AKG IA K+++ A E IPI P LAR+++K I IP Y++VA+ Sbjct: 282 NMKAPVLLAKGTGNIAIKIKEKAQEKFIPIIAVPPLARAIYKYCNIGEYIPIELYESVAE 341 Query: 345 LIYKIYHKK 353 ++ +Y+ K Sbjct: 342 ILTWVYNLK 350 >gi|121596106|ref|YP_988002.1| type III secretion exporter [Acidovorax sp. JS42] gi|120608186|gb|ABM43926.1| type III secretion exporter [Acidovorax sp. JS42] Length = 390 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 168/355 (47%), Gaps = 33/355 (9%) Query: 15 SSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS-- 68 + +K++ A ++G A SR+ S L LA L+ +F ++ L A+ Sbjct: 12 TERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQQLAFNAATVQ 71 Query: 69 ATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A LE + + V LL S +A + G L G G + V + + P Sbjct: 72 APGHMLERLQTMAGVGLLASASFAA---LTGGAALLSAVGAGGW------VFSFKPITPQ 122 Query: 127 FKRVSLREGIKRIYSINNLVNFMK--------SFVKIILVGTIITISLTENYFTMLDFIS 178 F R++ G ++S L N K SFV +G I E ++ + Sbjct: 123 FNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSI-----EKMAALV--LQ 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 +P S+ + + V ++LL + V+D+ + S+LKMS +E+K E K+S G Sbjct: 176 PSPMSLRHVGDWIVSGT-SLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP +K RQ+ AR + A +A ++ NPTHYA+AL+Y AP +V+KG +L Sbjct: 235 NPQLKGRQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDL 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++A H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 295 LAFKIREVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349 >gi|222112261|ref|YP_002554525.1| type III secretion exporter [Acidovorax ebreus TPSY] gi|221731705|gb|ACM34525.1| type III secretion exporter [Acidovorax ebreus TPSY] Length = 390 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 102/354 (28%), Positives = 169/354 (47%), Gaps = 31/354 (8%) Query: 15 SSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS-- 68 + +K++ A ++G A SR+ S L LA L+ +F ++ L A+ Sbjct: 12 TERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQQLAFNAATVQ 71 Query: 69 ATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A LE + + V LL S +A + G L G G + V + + P Sbjct: 72 APGHMLERLQTMAGVGLLASASFAA---LTGGAALLSAVGAGGW------VFSFKPITPQ 122 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F R++ G ++S L N K++L+ I++ + N+ M I +L Sbjct: 123 FNRLNPLTGFTNLFSKQQLANV----SKMVLMTGILSF-VAWNF--MGQSIEKMAALVLQ 175 Query: 187 HAFFTVRKVLIMIL-------LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++R V I+ L + V+D+ + S+LKMS +E+K E K+S GN Sbjct: 176 PSPLSLRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGN 235 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K RQ+ AR + A +A ++ NPTHYA+AL+Y AP +V+KG +L+ Sbjct: 236 PQLKGRQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLL 295 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R++A H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 296 AFKIREVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349 >gi|84514803|ref|ZP_01002166.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53] gi|84510962|gb|EAQ07416.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53] Length = 383 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 105/370 (28%), Positives = 184/370 (49%), Gaps = 39/370 (10%) Query: 4 NDAPDN--KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-FSPGIYSVTS 60 ++A D KTE P+ K++E A +G S+E + S++ + +LL+F P + + Sbjct: 3 DEASDGQEKTEEPTQKRLEKAKEDGQVASSKELFVLSTL--SVGFLLYFGLLPFLSGLLL 60 Query: 61 DLHVLLASATQRKLED-------ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 + LL + + L D S + + LVI ++L M GS Sbjct: 61 EWSALLRFSGEAGLHDEIIRNSSTSFAFIFWKSVIFALPLLVI--IVLTQMAMSGS---- 114 Query: 114 RIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISLTENY 170 +N + +FK R++ G+KR++S+ LV +K+ K+ L+G I + +E Sbjct: 115 ----INWSASALAFKGSRINPVNGLKRMFSVKALVEMLKAVGKVASLIGAAIFVFSSE-- 168 Query: 171 FTMLDFISANPHSILYHAFFTVRKV----LIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 +D + + + L+ + V +I+ LL +A + + D+ + + KLKM+ Sbjct: 169 ---VDKLLTSQATHLFGGLSRLGDVFIFLMIVFLLVLAVIAMFDVVYQQYDNNKKLKMTL 225 Query: 227 QEIKDEIKQSYGNPIIKNRQKSI-----ARSRIRHKMMEATSRATIIITNPTHYALALRY 281 QE+KDE KQ+ G+P +K + + + +R++ R + ME AT IITNP H+A+AL+Y Sbjct: 226 QELKDESKQTEGSPEVKAKIRRLQMTAGSRAKQRREAMEQVPSATAIITNPIHFAVALKY 285 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 AP ++A G+ A+++ ++ E + +F LAR+LF I IPP Y A Sbjct: 286 EIGTRGAPTILAMGRGHQAQEIIRLGKEAGVTVFSNELLARALFFAGRIGDEIPPPLYTA 345 Query: 342 VAQLIYKIYH 351 VA ++ IY Sbjct: 346 VAAVLAFIYQ 355 >gi|254461227|ref|ZP_05074643.1| flagellar protein FlhB [Rhodobacterales bacterium HTCC2083] gi|206677816|gb|EDZ42303.1| flagellar protein FlhB [Rhodobacteraceae bacterium HTCC2083] Length = 383 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 185/379 (48%), Gaps = 52/379 (13%) Query: 1 MSENDAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSV 58 M+E + KTE P+ K+++ A +G P S+E +F+++ + LIY+ P + S+ Sbjct: 1 MAEGGSDGQEKTEEPTQKRLDKAKEDGQVPSSKELFVFTTLFIGMLIYVGLV--PVLPSL 58 Query: 59 TSDLHVLLASATQRKLEDI--------------SHIVFLLTHLSLS-ASRLVIPGLLLFM 103 + +L + + ++ L D +VF L L + A++ + GL+ Sbjct: 59 VQEWGMLFSFSGEKGLTDAIFGNLGASFRFMFWKSVVFALPMLVVVIATQAAMSGLI--- 115 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161 N ++ +FK R++ G+KR+ S+ LV +K+ K+ L+ + Sbjct: 116 ---------------NWSNGALAFKASRINPLSGLKRMVSMKALVEMLKAIGKVTLLISA 160 Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKV---LIMILLFI-ATLTVLDIGWSYHQ 217 + ++L +S H L + V LI++ LF+ + + D+ + ++Q Sbjct: 161 SVMVFVSQIESLL--VSNATH--LTGGLSRMNDVFVLLIIVFLFVLGIMAMADVMYQHYQ 216 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI-----ARSRIRHKMMEATSRATIIITNP 272 +LKM+ QE++DE KQ+ G+P +K + + + +R++ R M+A AT IITNP Sbjct: 217 HNKQLKMTLQEVRDESKQTEGSPEVKAKIRRMQMTAGSRAKARKAAMDAVPTATAIITNP 276 Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH+A+AL+Y AP ++A G+ A+++ + + IF LAR+LF + Sbjct: 277 THFAVALKYEVGTVGAPTILAMGRGHFAQEIISTGRDAGVTIFRNELLARALFFAGQVGE 336 Query: 333 AIPPVFYKAVAQLIYKIYH 351 IP + AVA ++ IY Sbjct: 337 EIPAPLFSAVAGVLAFIYR 355 >gi|283836566|ref|ZP_06356307.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC 29220] gi|291067495|gb|EFE05604.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC 29220] Length = 347 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/342 (24%), Positives = 170/342 (49%), Gaps = 11/342 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLHVLLA 67 KT+AP+SKKI DA EG +++ A L + + LA ++ L+ + I+ SDL + Sbjct: 4 EKTQAPTSKKIRDAREEGQ--VAKTAELAAGVQLAVILMYLYLWGDDIWQDLSDLLLF-- 59 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF---GIGSYLIQRIPVLNLNHVK 124 T K+ D I F +S+ + + LF + + +YL Q + + + Sbjct: 60 --TIDKMNDPLPIAFA-GFISMFGKFVFEDLIFLFAVLFFASMSAYLAQIGFLFSGKAMM 116 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P ++ + + +K I+S+ +LV +K+ VK+ ++G++ ++ + + P Sbjct: 117 PKLDKLDVVKNLKNIFSVKSLVELLKNLVKMTIIGSVFYYLFCRYIPSLRNMVYIEPADA 176 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + + ++L ++ D + ++ L+MS +E+K E K+ G+ +K+ Sbjct: 177 MQVTLKIIFWLWGGLVLCYIVFSLADYAYQRYELMKNLRMSHEEVKQEYKEMEGSAEVKS 236 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +KS+ + + +++ +I NPTH A+ + Y + PV+ AKG +LIA+ + Sbjct: 237 HRKSLHQEIQSGSLANTVKKSSAVIRNPTHLAICIYYDENITPLPVITAKGADLIARYIV 296 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA + +P+ E LAR L K++ I P F+ A+++++ Sbjct: 297 DIAEKAGVPVIENVPLARGLNKEIKTGDYISPPFFSAISEIL 338 >gi|328958267|ref|YP_004375653.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4] gi|328674591|gb|AEB30637.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4] Length = 355 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 178/354 (50%), Gaps = 22/354 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL----H 63 D KTE S KK+ D +G P S + +S + ++++L G Y + L + Sbjct: 5 DGKTEKASPKKLRDTRKKGEIPKSPD---LTSAVTFIVFILTATFLGNYILKYSLLYLQN 61 Query: 64 VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L A T LE+ + IVF+L L P L + + ++Q + Sbjct: 62 YLSAEFTVNGLENNLADIGMKSIVFVLI--------LAGPFLAIAFAAAFIASILQTGFL 113 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + +K +++ G K ++S L +K+ K+ LV + +L + + +L+ Sbjct: 114 FSAEPIKFKLSKINPISGFKNMFSKKTLFTMIKNVAKLTLVFWMAYKTLETSAYLILNSS 173 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + + V ++ + + + L ++D + + + LKMSKQE+KDE K+S Sbjct: 174 NVGTEKLFFLMSDLVLELGTQLGVLLLILGLVDYIYQVYDYRKNLKMSKQELKDEFKESE 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK++++ R + + + + AT IITNPTH A+A+RY + +++ P++VAKG + Sbjct: 234 GDPQIKSQRRQRYRQLTKGALQDVET-ATAIITNPTHLAIAIRYEKGKDEVPIIVAKGAD 292 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A K+R+ A ++PI E +AR+++K V I +P Y+A+A+++ +Y Sbjct: 293 YQAAKIRERAKAFDVPIIENKPVARAMYKTVEIGQPVPVDLYQAIAEILALVYQ 346 >gi|14719875|gb|AAK73239.1| SctU [Burkholderia pseudomallei] Length = 351 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/351 (26%), Positives = 176/351 (50%), Gaps = 22/351 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62 D KTE P+ KK+ DA +G +SR L S+ + L+ F + ++ + Sbjct: 3 DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +++ L +++ ++ ++LSA V+P L + + GIG ++Q ++L Sbjct: 61 LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V P+ ++ EG+K ++S + + +K VK ++V + ++ + + + +P Sbjct: 116 VMPNLGALNPAEGLK-LFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L F R++L L+ +A L +L D+ + K+KM+K E+K E K G Sbjct: 175 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 230 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K +K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + Sbjct: 231 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDE 290 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 291 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 340 >gi|224825749|ref|ZP_03698853.1| type III secretion exporter [Lutiella nitroferrum 2002] gi|224601973|gb|EEG08152.1| type III secretion exporter [Lutiella nitroferrum 2002] Length = 380 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/367 (27%), Positives = 171/367 (46%), Gaps = 31/367 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE + K+ A +G SR+ + +L L L F PG Sbjct: 1 MAETRGGD-KTEKATPHKLRQARQQGQVARSRDMASAIGLLVAL-KLAFLSMPGWLDDFR 58 Query: 61 DLHVLLAS--ATQRKLEDISHIVF-----LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L L + + Q L + ++F LL + L + VIP L+ + G + Sbjct: 59 RLFALSFATLSGQGALGNTWSMLFSGTLTLLVKMILPLA--VIPLLVATVSLFPGGW--- 113 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENY 170 V H +P R++ RI S + + KS VK +++G + ++ +++ Sbjct: 114 ---VFASRHFQPRLDRLNPLAHFGRIASPQHASDIAKSIVKALVLGAVLYHVSRGAAQDF 170 Query: 171 FTM----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 F + LD + S+L A + V I L +D+ + + +MSK Sbjct: 171 FALQGVPLDEALSRAASLLMDALLALTAVFIAFAL-------IDLPLQTLLFLRQQRMSK 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QEIKDE K + G P IK R + + + + ++ A ++I NP+HYA+AL+Y + Sbjct: 224 QEIKDEYKTTEGRPEIKQRVRQLQLQMAQRGVRKSVPTADVVIVNPSHYAVALKYDEDRA 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP ++AKG + +A +R++A EH + + P LAR+++ +N IP Y+AVAQ++ Sbjct: 284 EAPFIIAKGIDEMALYIRQVAAEHAVEVLPIPPLARAVYHTTQVNQQIPAPLYRAVAQVL 343 Query: 347 YKIYHKK 353 + K Sbjct: 344 TYVLQLK 350 >gi|254475662|ref|ZP_05089048.1| type III secretion exporter [Ruegeria sp. R11] gi|214029905|gb|EEB70740.1| type III secretion exporter [Ruegeria sp. R11] Length = 360 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 171/363 (47%), Gaps = 34/363 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D D E P+ +KI A +G+ P S + S+ ++ L +I + ++ G + Sbjct: 1 MSQDDDSDKSYE-PTPEKIRKAREKGDVPKSTDLSVAAAYLGLIIVV---YTSG-EDMVR 55 Query: 61 DLHVLLAS---ATQRKLE------DISHIVFLLTHL-SLSASRLVIPGLLLFMMFGIGSY 110 D+ L+ S R E + LL + S A +IP + + S Sbjct: 56 DMGSLMMSFLDQPDRHAELFFSDNGTPPVGGLLKSVASAMAPMFIIPAAAVIL-----SL 110 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 + QR V + ++P R+S+ K + + L F KS VK+IL + I L Sbjct: 111 VGQRALVFAPSKLEPKLSRISIMSNAKNKFGMTGLFEFAKSTVKLILFSVCMGIYLN--- 167 Query: 171 FTMLDFISANPHSILYHAFFTVR-------KVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + D I+ S AF V + +++ L+ + V+D + + K Sbjct: 168 YRLPDMIA----SAATGAFVVVTMLGQLAIEFMVLALIIALAVGVVDAAFQQADFTRKNM 223 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MS++EI DE+K S G+P +K ++ A+ ++ + A ++I NPTHYA+AL++ + Sbjct: 224 MSRKEIMDEMKNSEGDPHMKGARRQKAQQIAMSAGVQDVATADVVIVNPTHYAVALKWDR 283 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 APV V+KG + +A +R++A E+ +PI +P AR+L V I I Y VA Sbjct: 284 QPGQAPVCVSKGVDEVAAIIREVANENGVPIHSDPPTARALHAAVEIGDEIHEEHYAPVA 343 Query: 344 QLI 346 I Sbjct: 344 AAI 346 >gi|116328495|ref|YP_798215.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331225|ref|YP_800943.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121239|gb|ABJ79282.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124914|gb|ABJ76185.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 510 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 180/356 (50%), Gaps = 28/356 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILAC--LIYLL--FFFSPGIYSVTSDLH 63 + +TE S ++ + +GN P S E +LA LIYL+ +FF Y + +H Sbjct: 162 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILIYLMGEYFFMRTFYILRKYIH 221 Query: 64 VLLASATQRKLEDISH--IVFLLTHLSLSASRLVIP-------GLLLFMMFGIGSYLIQR 114 QR DIS + LL + S L+ P G ++ + +G R Sbjct: 222 ----GVGQRT--DISSESVTELLKNASTDLFTLLWPLLGITFVGAVIGNVAQVGFIFTPR 275 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 N + ++P+FK+V + + L N KS K+ L+ + I +++++F++L Sbjct: 276 ALSFNFSRIRPNFKKV--------LPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFSIL 327 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + K+ +++ + + ++++D + +++ LKM+ E K E K Sbjct: 328 ISGEMGLEQAVALVMSSSFKIFLVVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAK 387 Query: 235 QSYGNPIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 +S G+ ++ R++ +AR + + KM+ A ++ITNPTH+A+AL Y + AP+++A Sbjct: 388 ESDGDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIA 447 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 KG + A + +IA E+ +P E+ AR L+++V + + +P FY+A+A ++ ++ Sbjct: 448 KGVDDFALLIIRIARENGVPTVEDRIQARGLYEEVELGAEVPQQFYRAIATILSRL 503 >gi|323143905|ref|ZP_08078567.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei YIT 12066] gi|322416332|gb|EFY07004.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei YIT 12066] Length = 348 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 175/344 (50%), Gaps = 14/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSV------TSDL 62 KTE P+ K++ DA +G+ I++ + S+ A +I ++FFF ++ T+D Sbjct: 4 EKTEQPTDKRLRDAREQGD--IAKSQEVVSA--ATVIAVVFFFIANADNIFKKLLSTTD- 58 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +V S T E + I + S+ +V+P + + + + L Q + Sbjct: 59 YVFSNSITMPYDEALRLIGAAVIDCSIG---IVLPIVAAVLCAALVALLSQTGFLFAPKG 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 P + +S + K+++S+ NL+ F+K+ +K+ ++ + ++ ++ ++N Sbjct: 116 AIPKLENLSPAKWFKQVFSVKNLIEFIKNIIKVTVLSVAVYMAAKNSFREFFKIQNSNIG 175 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S+ + ++ + I ++ + L +D ++ ++ MS E+K E K+ G+P I Sbjct: 176 SVWELSAVLLKDLAIYAIVAFSILAAIDFVYTKFKYTKDHMMSPDEVKQEYKEMEGDPQI 235 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K++++ + + + T +A ++ITNPTHYA+A+ Y + PV++AKGQ +A++ Sbjct: 236 KSKRRQLHQEMANQSTLANTRKAKVLITNPTHYAVAIDYEEGRTKLPVILAKGQGDLARR 295 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 M IA E +IPI +P LAR+LF + +P VA+++ Sbjct: 296 MIAIAKEEHIPIMRQPPLARALFAEGSEEQYVPSDLLVQVAEVL 339 >gi|317009219|gb|ADU79799.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7] Length = 302 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 23/232 (9%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 61 IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFLG 109 Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + A ++ L+ L L +D+ Q+ + LKM+KQE+KD Sbjct: 110 ELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKD 169 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+ Sbjct: 170 EYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQF-DEEHPVPVV 228 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 VAKG + +A +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA Sbjct: 229 VAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 280 >gi|207109438|ref|ZP_03243600.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPKX_438_CA4C1] Length = 157 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 58/135 (42%), Positives = 92/135 (68%), Gaps = 1/135 (0%) Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268 +D+ Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A ++ Sbjct: 2 IDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVV 61 Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E +LAR L+++V Sbjct: 62 VTNPTHYAVALQF-DEEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYREV 120 Query: 329 PINSAIPPVFYKAVA 343 +N+AIP ++AVA Sbjct: 121 KLNAAIPEELFEAVA 135 >gi|121607921|ref|YP_995728.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2] gi|121552561|gb|ABM56710.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2] Length = 387 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 23/275 (8%) Query: 94 LVIPGLL-------------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140 +V+PGL+ L G G +++ P+ +P F R+ G+ ++ Sbjct: 83 MVLPGLVAGTGFAVLTGVAALVGALGAGGWILSTRPI------QPRFSRLDPVAGLTHLF 136 Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 S + N +K + ++G + L + T+ + L + L +L Sbjct: 137 SRQQMANVLKMVLMTGVLGVVAWQFLAGSMATVAMLVLQPSPRALGLLVDWLGAGLGWLL 196 Query: 201 LFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 L + ++D+ W+ ++L+MS QE++ E ++S GNP K R + R Sbjct: 197 LVLLLAALVDV--PMQAWFFKARLRMSHQEVRQEHQESDGNPHTKGRIRQRQRDLAERAS 254 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 + A RA ++ NP HYA+ALRY + AP ++A+G +L+A ++R +A EH +P+ + P Sbjct: 255 VGAVPRADFVVMNPAHYAVALRYDEKTMGAPQVIARGTDLLAFRIRDLAREHGVPVLQSP 314 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 315 RLARALYAHAALDQAIPAPLYAAVAQVLAHVYRLK 349 >gi|320538195|ref|ZP_08038090.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421] gi|320145012|gb|EFW36733.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421] Length = 379 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 110/366 (30%), Positives = 188/366 (51%), Gaps = 49/366 (13%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILA-----------CLIYLLFFFS 52 + +TE P+ K+ A EG P S++ + +F LA C+ L FFF Sbjct: 24 EGRTEDPTETKLRKAREEGRVPKSQDMNSALVVFFPALALILLAPHILNSCMEILKFFF- 82 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 + + +D+ ++ + IVF +T ++L+A G+ S LI Sbjct: 83 --LRCIQADIRS--GEWFFVFIKYFAQIVFPITFIALTA--------------GVLSNLI 124 Query: 113 Q-RIPVLNLNHVKPSFKRVS---LREGIKRIYSINNLVNFMKSFVK---IILVGTIITIS 165 Q R + + ++P F ++S +R + ++SI L N KS +K I+ V +I S Sbjct: 125 QNRGFLFSTKPIQPKFDKISPNIVRFFTRALFSIEGLFNLAKSLMKVAAIVFVSYLIIKS 184 Query: 166 LTENYFTMLD--FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + +ML F+ A + Y A K+L + L + + D + Q+ LK Sbjct: 185 NITVFISMLQVSFVQA----VFYIAGLAA-KILAAVSLLLLLFAIPDYFFQRKQFIDSLK 239 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSK EIK+EIK+ G+P+IK++ + ++ +R A + A ++ITNPTHYA+A++Y Sbjct: 240 MSKSEIKEEIKEQEGDPLIKSQLRRQMQAIVRESARGAAT-ADVVITNPTHYAVAVKYDL 298 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E AP+++AKG + +A+++++IA E+NIPI E LARSL+ QV I +P ++ A+ Sbjct: 299 GEMPAPIVIAKGSDQLAQRIKEIARENNIPIEENKPLARSLYAQVAIGKEVPYEYFNALV 358 Query: 344 QLIYKI 349 + K+ Sbjct: 359 LIFTKL 364 >gi|260858250|ref|YP_003232141.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368] gi|17384638|emb|CAC81850.1| EscU protein [Escherichia coli] gi|257756899|dbj|BAI28401.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368] Length = 345 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 169/343 (49%), Gaps = 13/343 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D +G+ S E L + + + V ++ + S Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I+ + ++ L ++P L+ + + + + Q + + +KPS + Sbjct: 63 LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML-DFISANPHSIL-- 185 ++S++ +K I+S+ ++ +KS K++++ T+I + +Y +F N + L Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVII-TLIFYFMGHSYANEFANFTRLNAYQTLVV 178 Query: 186 --YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + F + VL LLF +V D + H+ K+KMSK E+K E K + GNP IK Sbjct: 179 VAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIK 234 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ + + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ Sbjct: 235 GERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQI 294 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+A ++IP+ E+ +LARSL+K + I F++ VAQLI Sbjct: 295 IKLAELYDIPVIEDITLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|292493584|ref|YP_003529023.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4] gi|291582179|gb|ADE16636.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4] Length = 377 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 8/222 (3%) Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 +G+KR++ + +K+ K +L+G I + ++ D I+ ++ A + + Sbjct: 132 KGMKRVFGPQGWMELLKALAKFLLLGGIACVLF---WYLGPDLIALGRQGLI-PALYQLA 187 Query: 194 KVLIMILLFIATLTVL--DIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 ++ L ++ VL I + W+ +LKM+ QEIK+E K++ G+P +K R + + Sbjct: 188 HLMGWSFLGLSASLVLIAAIDAPFQHWHHTRQLKMTHQEIKEEHKETEGSPELKARVRRV 247 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +MM A +A +++TNPTHYA+AL Y Q + AP +VAKG + +A K+R +A Sbjct: 248 QREIAGRRMMAAVPQANVVVTNPTHYAVALDYQQDKGGAPRVVAKGADQVALKIRAVAAA 307 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +N+P+ PSL+R+L+ +N IP Y AVAQ++ ++ Sbjct: 308 NNVPVLSAPSLSRALYYNTELNQEIPAGLYVAVAQVLAYVFQ 349 >gi|317012581|gb|ADU83189.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Lithuania75] Length = 302 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 23/232 (9%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P F +++ G+K ++S+ L++ G++IT+ + +F S Sbjct: 61 IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFLG 109 Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + A ++ L+ L L +D+ Q+ + LKM+KQE+KD Sbjct: 110 ELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKD 169 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+ Sbjct: 170 EYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPVV 228 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 VAKG + +A +++ IA EH+I I E +LAR L+K V +N+ IP ++AVA Sbjct: 229 VAKGTDYLAIRIKGIAREHDIEIIENKTLARELYKDVKLNATIPEELFEAVA 280 >gi|218507112|ref|ZP_03504990.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5] Length = 218 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F+++LA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATVLATFIYLVFFLPENVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 +P R+S +G R++S+ L+ F KS +++VG I+ L N Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFNVVVVGVILFFVLRAN 182 >gi|167567199|ref|ZP_02360115.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis EO147] Length = 375 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 165/357 (46%), Gaps = 15/357 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+ D K+E + +K++ A +G P SR+ S +L + LL + + Sbjct: 1 MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +LA ++ + ++ + + A VIP ++ G + V Sbjct: 60 LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASVIAGSLFPGGW------VFAS 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + KP R+S + ++ S + F S K II + + T+ F+ Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAF---AIIAVLWHVSASTLPAFLRLQ 170 Query: 181 ----PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P +I + A V + + L+ +A +D+ + + +M+KQE+KDE K + Sbjct: 171 ALPLPEAIAHGARLFVDGAMTLALVILA-FASMDVPFQRFVFMRGQRMTKQEVKDEHKNN 229 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P ++ R + + R + + + A ++I NPTHYA+AL+Y DAP ++AKG Sbjct: 230 EGRPEVRGRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGV 289 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A +R++A H + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 290 DDMALVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346 >gi|167574623|ref|ZP_02367497.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis C6786] Length = 375 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 166/357 (46%), Gaps = 15/357 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+ D K+E + +K++ A +G P SR+ S +L + LL + + Sbjct: 1 MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +LA ++ + ++ + + A VIP ++ G + V Sbjct: 60 LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASVIAGSLFPGGW------VFAS 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + KP R+S + ++ S + F S K II + + T+ F+ Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAF---AIIAVLWHVSASTLPAFLRLQ 170 Query: 181 ----PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P +I + A V + + L+ +A +D+ + + +M+KQE+KDE K + Sbjct: 171 ALPLPEAIAHGARLFVDGAMTLALVILA-FASMDVPFQRFVFMRGQRMTKQEVKDEHKNN 229 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G P +++R + + R + + + A ++I NPTHYA+AL+Y DAP ++AKG Sbjct: 230 EGRPEVRSRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGV 289 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A +R++A H + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 290 DDMALVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346 >gi|312884592|ref|ZP_07744296.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC BAA-2122] gi|309367904|gb|EFP95452.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC BAA-2122] Length = 346 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 91/356 (25%), Positives = 165/356 (46%), Gaps = 39/356 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ K+I+DA +G S E + F + C +L+ Sbjct: 3 EKTEKPTQKRIKDARKKGQVVKSVEIVTGFQMAIICGYFLV------------------- 43 Query: 68 SATQRKLEDISHIVFLLTH-----LSLSASRLV----------IPGLLLFMMFGIG-SYL 111 Q +E I ++ + H L ++AS +V I GL ++ + S L Sbjct: 44 -EGQGLMEAIWKMIDIAIHSINLPLKVAASSVVGAFVYIMLRFISGLAALLVLTVAFSCL 102 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 +Q P+L +KPSF ++++ K I+S+ ++ K+ +K+ LV +++ L + Sbjct: 103 VQTGPLLATESLKPSFNKINVINNAKNIFSMKSIFELCKNMLKV-LVLSLVFYYLLHQHV 161 Query: 172 TMLDFISANPHSILYHAFFTVRKVL-IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 M ++ T+ K L L+ D + + Q +LKMSK++ K Sbjct: 162 NMFQYLPTCGAECGVEVISTLLKWLWTAFLICYVIFAAADYAFVHFQTMKQLKMSKEDTK 221 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E K++ GNP +K +++ + R + ++T+++ NPTH A+ L Y E P+ Sbjct: 222 QEYKETEGNPEVKQKRRELQRETANGSLATNVKKSTVVVRNPTHIAVCLYYNPDEAPVPI 281 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++ K Q +A ++A +H+IP+ E LAR+L+ QV IP ++ VA+L+ Sbjct: 282 VLDKAQEHMALHTVELAEKHSIPLIENIPLARALYHQVEPGQLIPESLFEPVAELL 337 >gi|126738573|ref|ZP_01754278.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6] gi|126720372|gb|EBA17078.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6] Length = 360 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 173/355 (48%), Gaps = 18/355 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D D E P+ +K++ A +G S + S+ ++ L +L F++ G V Sbjct: 1 MSQDDDSDKSFE-PTPQKLQKAREKGEVAKSTDLSVAAAYLG---LVLAFYAVGADMVAG 56 Query: 61 DLHVLLASATQ--RKLEDI------SHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYL 111 VL+ Q R + + + + LLT ++ L +IP +L+ + S L Sbjct: 57 TGTVLMTFFDQPDRLAQQLFYGGGTAPVGGLLTAIATPLIPLFLIPAVLVLL-----SIL 111 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 Q+ V + ++P ++S+ K L F KS K+ + + + LT Sbjct: 112 GQKALVFAPSKLEPKLSKISIISNAKNKLGRAGLFEFGKSAFKLTIYSICLGVYLTHRMP 171 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 M+ + S++ + L++ LL + V+D + + + K MS++EI+D Sbjct: 172 EMIASVGTGAFSVIKLLSELGMEFLVIALLVSLPIGVVDAVFQHAEHRRKNMMSRKEIQD 231 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K S G+P +K +++ A++ +MM A A++++ NPTHYA+AL++ AP+ Sbjct: 232 EQKNSEGDPHMKAKRRQKAQAIALGQMMGAVPDASVVVVNPTHYAVALKWEGGAGTAPIC 291 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 VAKG + +A +R++A E+ +PI +P AR+L+ + I + Y VA I Sbjct: 292 VAKGVDEVAAAIRQVANENAVPIHSDPPTARALYATIEIGEEVMEEHYAPVAAAI 346 >gi|119714987|ref|YP_921952.1| type III secretion exporter [Nocardioides sp. JS614] gi|119535648|gb|ABL80265.1| type III secretion exporter [Nocardioides sp. JS614] Length = 381 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 165/354 (46%), Gaps = 22/354 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 K+E P++K+ ++ EG P S E +S++L ++L F I + + + Sbjct: 3 GEKSEKPTAKRNKENRKEGQVPRSPEIGAWSALLLIAMFLPRLFGHEIDKLRELTTTMFS 62 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 SA D V LL +++ + GI L Q L VKP Sbjct: 63 SAAD---ADAEIAVQLLGQGLWHVLLVLVVLGAGIAVVGIAGALGQGGFFLATKSVKPKL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA-NPHSILY 186 +++ G KRI+ L K ++ +V ++ +++ +ML I P S++ Sbjct: 120 SKLNPLPGFKRIFGPRALWEGTKMLIRSGIVALLVWLAVK----SMLPLIGGLMPMSLVL 175 Query: 187 -----HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 HA +R + + +L A D K +MSK E+K E KQS G+P+ Sbjct: 176 DQFASHALSMIRNIAVAGVLLGAA----DYLVQRKLMGKKTRMSKDEVKQEHKQSEGDPL 231 Query: 242 IKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 +K R + +A SR ++MM A +++ NPTH A+ALRY + E AP +VA+G +I Sbjct: 232 LKGAIRSRQLAASR--NRMMADVPTADVVLVNPTHVAVALRY-EPERGAPRVVARGAGVI 288 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +R+ A E +P+ + LAR+L+ + IP + AVAQ++ + ++ Sbjct: 289 AAAIREKATEARVPLVRDVPLARALYTSTTVGQEIPTELFAAVAQVLAFVLSRR 342 >gi|149184191|ref|ZP_01862509.1| type III secretion exporter [Erythrobacter sp. SD-21] gi|148831511|gb|EDL49944.1| type III secretion exporter [Erythrobacter sp. SD-21] Length = 387 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 171/374 (45%), Gaps = 45/374 (12%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57 MSE D P K AP+ K++ DA +G+ S++A + +L +L + G+ Sbjct: 1 MSE-DTPGEKNFAPTEKRLADAAKKGDVLRSKDAGTAAVMLFGGAWLALAGPWLLEGLTD 59 Query: 58 VTSDLHVLLASATQRKLEDIS-------------HIVFLLTHLSLSASRLVIPGLLLFMM 104 + D + AS L D S VF L A +++ L + Sbjct: 60 LARDAFLFDAS----DLRDFSVQGLLIEGLLLGVPAVFAL------AVPVIVVTLFSQLA 109 Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 FG G ++ +++K +R++ G+KR++ + L+ K +KI L+G+I Sbjct: 110 FGRGRWVT--------DNLKAKGQRINPMSGLKRMFGMQGLIEMGKGLLKIALLGSIAAA 161 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV-----LDIGWSYHQWY 219 + ++ N + L A+ R ++ ++ A L V L I W Q Sbjct: 162 WWWNSMDVVIGLGRGNLSAQLTAAW---RAIVSLVFALSAGLVVIAFVDLPIQWLRQQ-- 216 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 +LKMS QE++DE K+S G+P ++ ++ R + A A +I NPTH+A+AL Sbjct: 217 KRLKMSHQEMRDENKESEGSPEMRAARRQRQRDIATGSVAGAMREAQFVIANPTHFAVAL 276 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 Y AP+L+AKG+ A M+++A E ++P E P LARS++ I Y Sbjct: 277 TYDPARASAPILLAKGRGDKALAMKELASELDLPTLEMPQLARSVYYTTRERQIICEDLY 336 Query: 340 KAVAQLIYKIYHKK 353 AVA +I ++ K Sbjct: 337 SAVASVIAYVFSLK 350 >gi|193062073|ref|ZP_03043169.1| EscU [Escherichia coli E22] gi|194426490|ref|ZP_03059045.1| EscU [Escherichia coli B171] gi|260845709|ref|YP_003223487.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009] gi|13447704|gb|AAK26703.1|AF200363_11 EscU [Escherichia coli] gi|18034508|gb|AAL57530.1|AF453441_14 EscU [Escherichia coli] gi|57434469|emb|CAI43886.1| EscU protein [Escherichia coli] gi|192932293|gb|EDV84891.1| EscU [Escherichia coli E22] gi|194415798|gb|EDX32065.1| EscU [Escherichia coli B171] gi|195183210|dbj|BAG66755.1| T3SS structure protein EscU [Escherichia coli O111:H-] gi|254692328|emb|CAR47969.1| EscU protein [Escherichia coli] gi|254692396|emb|CAR48039.1| EscU protein [Escherichia coli] gi|257760856|dbj|BAI32353.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009] gi|323163021|gb|EFZ48854.1| hypothetical protein ECE128010_0617 [Escherichia coli E128010] Length = 345 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 168/343 (48%), Gaps = 13/343 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D +G+ S E L + + + V ++ + S Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I+ + ++ L ++P L+ + + + + Q + + +KPS + Sbjct: 63 LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML-DFISANPHSIL-- 185 ++S++ +K I+S+ ++ +KS K++++ T+I + +Y +F N + L Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVII-TLIFYFMGHSYANEFANFTRLNAYQTLVV 178 Query: 186 --YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + F + VL LLF +V D + H+ K+KMSK E+K E K + GNP IK Sbjct: 179 VAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIK 234 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ + + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ Sbjct: 235 GERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQI 294 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+A ++IP+ E+ LARSL+K + I F++ VAQLI Sbjct: 295 IKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|319795601|ref|YP_004157241.1| type III secretion exporter [Variovorax paradoxus EPS] gi|315598064|gb|ADU39130.1| type III secretion exporter [Variovorax paradoxus EPS] Length = 346 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 167/343 (48%), Gaps = 14/343 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 K +AP+ K++ +A G S + + F+++L C ++L G +S+ S L L Sbjct: 3 EKDQAPTRKRLREARRRGEVAFSADVASTVGFAAVL-CAVWL------GGHSIYSLLREL 55 Query: 66 LASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 AT L F L+ H + +P + + + GI L Q + + Sbjct: 56 WLHATSTSLLSRPDDRFGELVLHTGEALLWGTVPIMGIAALAGIVGSLFQVGGMAAWGRL 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P R++ EG KRI+S + +N +K +K +L+G ++ + + T L A P Sbjct: 116 VPDMNRMNPAEGFKRIFSTRSAINLLKMVLKTVLLGALMFLVVRGYLDTALKLGYATPAG 175 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL V + LL A + +D +H++ + +MS ++I+ E K+S G+P+ + Sbjct: 176 ILAAGARMVLQAFGWALLVYALMAAIDYAHEHHEFIKQQRMSFEDIRQEHKESDGDPLTQ 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R++S + + + A+ +I + A+AL+Y+ E D P ++A+G+ + ++ Sbjct: 236 ARRRSAHFEAVYASLADRVRAASAVICS-ARVAVALQYL-GERDLPRVIARGEGEVGAQI 293 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 R+ A E IP EPSLA L++ VP + AIP Y VA+L+ Sbjct: 294 RRFASEGLIPTEFEPSLAERLYEDVPQDQAIPRSLYAPVARLL 336 >gi|163742549|ref|ZP_02149935.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis 2.10] gi|161384134|gb|EDQ08517.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis 2.10] Length = 359 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 171/354 (48%), Gaps = 17/354 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ +K+ P+ +K+E A +G P S + ++ +S L +I + + V Sbjct: 1 MSDDDS--DKSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIIAIYVSGA----DVVE 54 Query: 61 DLHVLLASATQR--KLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 +L +L S + +L D+ + + ++ +P ++ M + S + QR Sbjct: 55 ELGTILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRA 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + ++P ++S+ K + + L F KS VK++L + + L + + D Sbjct: 115 LVFAPSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGVYLN---YRLPD 171 Query: 176 FISANPHSILYHAFFTVR---KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 I+++ + + LI+ L+ + V+D + + K MS+QEI DE Sbjct: 172 MIASSATGAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDE 231 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K++ G+P +K ++ A + + + A ++I NPTHYA+AL++ + APV V Sbjct: 232 SKEAEGDPHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPVCV 291 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AKG + +A +R++A E+ +PI +P AR+L V I I Y VA I Sbjct: 292 AKGVDEVAAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAI 345 >gi|149179491|ref|ZP_01858040.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797] gi|148841678|gb|EDL56092.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797] Length = 323 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISANPHS 183 ++R++ EG KRI SI LV S KI L ++ I++ +Y L + A P + Sbjct: 89 WERLNPIEGAKRIISIRGLVKLGVSLGKISL---LVLIAVWFSYLVFPGFLGLMGAPPET 145 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYGNPI 241 IL F + ++ +++ L + L LD +++ +W L MSKQEI++E+K G+P+ Sbjct: 146 ILRDIFNSTIELGLLLALALIILGGLD--YAFQKWKHEKDLMMSKQEIREEMKSMDGDPL 203 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 I+ R++ R + + A ++ITNPTH ++A++Y APV+VAKG IA Sbjct: 204 IRQRRREAHRKLAMSQELSKVESADVVITNPTHISIAIKYDPESMPAPVVVAKGAGEIAF 263 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++RKIA EH IPI E +LAR +++ V IP Y+ +++ +Y Sbjct: 264 QIRKIANEHGIPIIERKALARQMYRDVKTGQEIPFELYEVFVEIMAYVY 312 >gi|171323057|ref|ZP_02911702.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] gi|171091551|gb|EDT37164.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] Length = 216 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 22/219 (10%) Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA----------FFT 191 + +++ ++ VK+ G T++ Y + D + A H+ L A F Sbjct: 1 MQTVLDAARACVKL---GVYCTLA----YRCIADAVRAASHAGLTAAGLARTLGSASFAL 53 Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 ++LI LF TV D ++ +++MS+ E+K E KQ G+P IK R++ + R Sbjct: 54 ATQLLIAAALF----TVFDYALVRRRFAKQMRMSRHEVKQEFKQHDGDPRIKQRRRQLQR 109 Query: 252 SRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310 + R + + A +++TNPTHYA+ LRY E AP +V+KG A ++RK+A+ H Sbjct: 110 GLLQRSRSLRGMRGADVLVTNPTHYAIGLRYTPAEMAAPTIVSKGAGEFALRLRKLAFIH 169 Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + I E P+LAR LF+ +++ IPP + A A + ++ Sbjct: 170 RVQIVEAPALARQLFRHGALDTEIPPQLFVATAAIYLRV 208 >gi|215488991|ref|YP_002331422.1| secretion system apparatus protein SsaU [Escherichia coli O127:H6 str. E2348/69] gi|260869698|ref|YP_003236100.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128] gi|312967936|ref|ZP_07782148.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|2865279|gb|AAC38372.1| EscU [Escherichia coli] gi|54311603|emb|CAG17518.1| EscU protein [Escherichia coli] gi|215267063|emb|CAS11508.1| T3SS structure protein EscU [Escherichia coli O127:H6 str. E2348/69] gi|221361437|emb|CAX18590.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361494|emb|CAX18665.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361555|emb|CAX18745.1| Type III secretion system, LEE associated [Escherichia coli] gi|257766054|dbj|BAI37549.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128] gi|312287497|gb|EFR15405.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|323178898|gb|EFZ64474.1| hypothetical protein ECOK1180_2632 [Escherichia coli 1180] Length = 345 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/350 (28%), Positives = 172/350 (49%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACL--IYLLFFFSP--GIYSVTSD- 61 KTE P+ KK+ D +G+ S E A++ S IL +Y + FF G+ + T D Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-VLNL 120 L+ A + L + +I FLL L +S L + G + + +I + + Sbjct: 63 LNRPFLYAIREILGAVLNI-FLLYILPIS----------LIVFVGTVTTGVSQIGFIFAV 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KPS +++S++ +K I+S+ ++ +KS K++++ I +F N Sbjct: 112 EKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLN 171 Query: 181 PHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + L + F + VL LLF +V D + H+ K+KMSK E+K E K + Sbjct: 172 AYQALVVVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDT 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP IK ++ + + ++T+I+ NPTH A+ L Y E P+++ G+ Sbjct: 228 DGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGK 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++ K+A ++IP+ E+ LARSL+K + I F++ VAQLI Sbjct: 288 DAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|163738055|ref|ZP_02145471.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis BS107] gi|161388671|gb|EDQ13024.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis BS107] Length = 359 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/354 (25%), Positives = 171/354 (48%), Gaps = 17/354 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ +K+ P+ +K+E A +G P S + ++ +S L ++ + + V Sbjct: 1 MSDDDS--DKSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIVAIYVSGA----DVVE 54 Query: 61 DLHVLLASATQR--KLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 +L +L S + +L D+ + + ++ +P ++ M + S + QR Sbjct: 55 ELGTILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRA 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + ++P ++S+ K + + L F KS VK++L + I L + + D Sbjct: 115 LVFAPSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGIYLN---YRLPD 171 Query: 176 FISANPHSILYHAFFTVR---KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 I+++ + + LI+ L+ + V+D + + K MS+QEI DE Sbjct: 172 MIASSATGAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDE 231 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K++ G+P +K ++ A + + + A ++I NPTHYA+AL++ + AP+ V Sbjct: 232 SKEAEGDPHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPICV 291 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AKG + +A +R++A E+ +PI +P AR+L V I I Y VA I Sbjct: 292 AKGVDEVAAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAI 345 >gi|108764098|ref|YP_633783.1| FlhB/HrpN/YscU/SpaS family type III secretion protein [Myxococcus xanthus DK 1622] gi|108467978|gb|ABF93163.1| type III secretion protein, FlhB/HrpN/YscU/SpaS family [Myxococcus xanthus DK 1622] Length = 349 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 155/342 (45%), Gaps = 24/342 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE PS+K++ +A +G P SR L+ + G++ +T+ V +A Sbjct: 4 EKTEKPSAKRLREARRKGQIPRSR-----------LLNASAVTAGGLFGLTAAAPVGMA- 51 Query: 69 ATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFG--IGSYLIQRIPVL----NLN 121 +L+ + +FL L L I + G + L+ + + +L Sbjct: 52 ----RLQAWTEHLFLGQQDLGAWQEGLWIAARFCGPVLGGAFAAALLVSVATVGLEADLQ 107 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 HV+P +R+SL G++R++S V K+ + + LVG ++ + E + Sbjct: 108 HVEPKLERISLVAGMQRLFSWRPWVELAKTLLIVCLVGALVWSDVEEAAPDAMKTAWLGG 167 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 L A V + + + L V D ++ + L M+++E+K E K S G+P Sbjct: 168 AEGLSLAVAHVSGLASRLACLLVVLGVGDYALAWRRHIKDLMMTREEMKREYKDSEGDPR 227 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 K ++K++ R + +AT ++ NPTH A+ALRY E +AP LVAK + A+ Sbjct: 228 HKGQRKALHRQLAQGGAARGVQKATAVVVNPTHIAVALRYDVDECEAPYLVAKAREGDAR 287 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 MR+ A I + + LARSL + IP Y+A A Sbjct: 288 AMREQARRLGIAVVRDIPLARSLI-HYDVGEPIPEELYQAAA 328 >gi|323152631|gb|EFZ38907.1| flagellar biosynthetic protein flhB [Escherichia coli EPECa14] Length = 213 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 110/181 (60%) Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE Sbjct: 1 MMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDE 60 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +V Sbjct: 61 FKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVV 120 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 121 AKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 180 Query: 353 K 353 K Sbjct: 181 K 181 >gi|332531605|ref|ZP_08407502.1| type III secretion exporter [Hylemonella gracilis ATCC 19624] gi|332038968|gb|EGI75397.1| type III secretion exporter [Hylemonella gracilis ATCC 19624] Length = 417 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/350 (25%), Positives = 171/350 (48%), Gaps = 23/350 (6%) Query: 15 SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL 74 S +K++ A +G P SR+ S + +L L +P IYS L LA Sbjct: 13 SQRKLQRAREDGQVPRSRDFSHLA-VLGGGAVTLVLTAPWIYSA---LRESLARHLSFSA 68 Query: 75 EDISHIVFLLTHL---SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131 D+ F+L HL +L+ + + + ++ + + + L V + P F R++ Sbjct: 69 ADVRDPKFMLDHLHTMTLTGAGISLGIAVIIVAIAVVATLAGGGWVWTTTPLAPDFSRIN 128 Query: 132 LREGIKRIYSINNLVNFMK-SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190 +G++ +++ L +K +F+ ++ ++ Y+T+ + +L + Sbjct: 129 PIKGLQGMFTKKKLAEVVKLAFIAFF----VLALAAVFIYYTLPSISTL----VLQPSTA 180 Query: 191 TVRKVLIMILLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + ++L +++ L +D+ S+LKMS QE+KDE K GNP +K Sbjct: 181 GIERMLNWLVMGCGLLLAVVLLVALIDLPLQIFLHKSELKMSLQEMKDEHKDIEGNPQMK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +R++ R + + + +A ++ NPTHYA+A++Y + AP +V+KG +L+A K+ Sbjct: 241 SRRRQKQRELAQRQSLPKVPQADFVLMNPTHYAVAVKYEEKSMAAPRVVSKGADLLAMKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R +A H +P+ + P LAR+L+ ++ IP Y AVAQ++ +Y K Sbjct: 301 RDLAKAHQVPVLQSPVLARALYAHAELDQDIPSTLYTAVAQVLAYVYRLK 350 >gi|34498065|ref|NP_902280.1| secretion system apparatus protein SsaU [Chromobacterium violaceum ATCC 12472] gi|34103920|gb|AAQ60280.1| type III secretion system EscU protein [Chromobacterium violaceum ATCC 12472] Length = 351 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 11/342 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI DA N+G S E + + L Y F + ++ L+V ++ Sbjct: 3 EKTEKPTPKKIRDARNKGQVAKSTEITSGVQLAVLLAYFCFEGPHLLQALQGMLNVAISV 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + I+ + L++ R + L ++ I + + Q P+L +KPS + Sbjct: 63 VNQDLVFGINQLTGAFLELAM---RFLGGIAALVIIMTIAAVIAQIGPLLATEALKPSLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS----ANPHSI 184 +++ +K+++S+ +L FMKS K+ ++ ++I L Y + F+ A + Sbjct: 120 KLNPVSNLKQMFSMRSLFEFMKSIFKVTIL-SLIFFYLLRQYSPSIQFLPLSDVATGMRV 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 F + LI F + D + + +L MS ++IK E K S GNP IK Sbjct: 179 STQLLFWMWASLIG---FYIIFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKQ 235 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++K R + + S++T ++ NPTH A+ LRY E P + A G++ +A + Sbjct: 236 KRKEAHREIQSGSLADNVSKSTAVVRNPTHIAVCLRYQPGETPLPQVTAVGRDAMALHIV 295 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+A + IP+ E +AR+L + I I ++ VAQ++ Sbjct: 296 KLAEKAGIPVVENIEVARALAAKTKIGGYISAELFEPVAQIL 337 >gi|15804241|ref|NP_290280.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 EDL933] gi|15833834|ref|NP_312607.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. Sakai] gi|168748643|ref|ZP_02773665.1| EscU [Escherichia coli O157:H7 str. EC4113] gi|168753530|ref|ZP_02778537.1| EscU [Escherichia coli O157:H7 str. EC4401] gi|168759827|ref|ZP_02784834.1| EscU [Escherichia coli O157:H7 str. EC4501] gi|168766127|ref|ZP_02791134.1| EscU [Escherichia coli O157:H7 str. EC4486] gi|168772324|ref|ZP_02797331.1| EscU [Escherichia coli O157:H7 str. EC4196] gi|168779862|ref|ZP_02804869.1| EscU [Escherichia coli O157:H7 str. EC4076] gi|168785595|ref|ZP_02810602.1| EscU [Escherichia coli O157:H7 str. EC869] gi|168798676|ref|ZP_02823683.1| EscU [Escherichia coli O157:H7 str. EC508] gi|195936263|ref|ZP_03081645.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. EC4024] gi|208808072|ref|ZP_03250409.1| EscU [Escherichia coli O157:H7 str. EC4206] gi|208813986|ref|ZP_03255315.1| EscU [Escherichia coli O157:H7 str. EC4045] gi|208819764|ref|ZP_03260084.1| EscU [Escherichia coli O157:H7 str. EC4042] gi|209398003|ref|YP_002273176.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. EC4115] gi|217326036|ref|ZP_03442120.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. TW14588] gi|254795655|ref|YP_003080492.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. TW14359] gi|261225799|ref|ZP_05940080.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK2000] gi|261258844|ref|ZP_05951377.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK966] gi|291285068|ref|YP_003501886.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. CB9615] gi|12518474|gb|AAG58844.1|AE005597_2 escU [Escherichia coli O157:H7 str. EDL933] gi|3414914|gb|AAC31525.1| L0046 [Escherichia coli] gi|13364055|dbj|BAB38003.1| type III secretion system EscU protein [Escherichia coli O157:H7 str. Sakai] gi|187771533|gb|EDU35377.1| EscU [Escherichia coli O157:H7 str. EC4196] gi|188016976|gb|EDU55098.1| EscU [Escherichia coli O157:H7 str. EC4113] gi|189002618|gb|EDU71604.1| EscU [Escherichia coli O157:H7 str. EC4076] gi|189359336|gb|EDU77755.1| EscU [Escherichia coli O157:H7 str. EC4401] gi|189364785|gb|EDU83204.1| EscU [Escherichia coli O157:H7 str. EC4486] gi|189369865|gb|EDU88281.1| EscU [Escherichia coli O157:H7 str. EC4501] gi|189374533|gb|EDU92949.1| EscU [Escherichia coli O157:H7 str. EC869] gi|189378742|gb|EDU97158.1| EscU [Escherichia coli O157:H7 str. EC508] gi|195957531|gb|ACG59642.1| type III secretion system protein EscU [Escherichia coli O157:H7] gi|195957590|gb|ACG59700.1| type III secretion system protein [Escherichia coli] gi|195957647|gb|ACG59756.1| type III secretion system apparatus protein SsaU [Escherichia coli] gi|208727873|gb|EDZ77474.1| EscU [Escherichia coli O157:H7 str. EC4206] gi|208735263|gb|EDZ83950.1| EscU [Escherichia coli O157:H7 str. EC4045] gi|208739887|gb|EDZ87569.1| EscU [Escherichia coli O157:H7 str. EC4042] gi|209159403|gb|ACI36836.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. EC4115] gi|217322257|gb|EEC30681.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. TW14588] gi|254595055|gb|ACT74416.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|255348328|gb|ACU09470.1| secretion system apparatus protein SsaU [Escherichia coli] gi|290764941|gb|ADD58902.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. CB9615] gi|320639370|gb|EFX08985.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. G5101] gi|320644814|gb|EFX13850.1| secretion system apparatus protein SsaU [Escherichia coli O157:H- str. 493-89] gi|320650078|gb|EFX18574.1| secretion system apparatus protein SsaU [Escherichia coli O157:H- str. H 2687] gi|320655425|gb|EFX23360.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661051|gb|EFX28487.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. USDA 5905] gi|320666177|gb|EFX33183.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. LSU-61] Length = 345 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 172/350 (49%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACL--IYLLFFFSP--GIYSVTSD- 61 KTE P+ KK+ D +G+ S E A++ S IL +Y + FF G+ + T D Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-VLNL 120 L+ A + L + +I FLL L +S L + G + + +I + + Sbjct: 63 LNRPFLYAIREILGAVLNI-FLLYILPIS----------LIVFVGTVTTGVSQIGFIFAV 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KPS +++S++ +K I+S+ ++ +KS K++++ I +F N Sbjct: 112 EKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLN 171 Query: 181 PHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + L + F + VL LLF +V D + H+ K+KMSK E+K E K + Sbjct: 172 AYQALVVVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDT 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP IK ++ + + ++T+I+ NPTH A+ L Y E P+++ G+ Sbjct: 228 DGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGK 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++ K+A ++IP+ E+ LAR+L+K + I F++ VAQLI Sbjct: 288 DAKALQIIKLAELYDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLI 337 >gi|323189404|gb|EFZ74685.1| hypothetical protein ECRN5871_2292 [Escherichia coli RN587/1] Length = 345 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 176/351 (50%), Gaps = 29/351 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACL--IYLLFFFSP--GIYSVTSD- 61 KTE P+ KK+ D +G+ S E A++ S IL +Y + FF G+ + T D Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-VLNL 120 L+ A + L + +I FLL L +S L + G + + +I + + Sbjct: 63 LNRPFLYAIREILGAVLNI-FLLYILPIS----------LIVFVGTVTTGVSQIGFIFAV 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA- 179 +KPS +++S++ +K I+S+ ++ +KS K++++ +I + +Y + + Sbjct: 112 EKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVII-VLIFYFMGHSYANEFAYFTGL 170 Query: 180 NPHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 N + L + F + VL LLF +V D + H+ K+KMSK E+K E K Sbjct: 171 NAYQALVVVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKD 226 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + GNP IK ++ + + ++T+I+ NPTH A+ L Y E P+++ G Sbjct: 227 TDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETG 286 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VAQLI Sbjct: 287 KDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|320107036|ref|YP_004182626.1| type III secretion exporter [Terriglobus saanensis SP1PR4] gi|319925557|gb|ADV82632.1| type III secretion exporter [Terriglobus saanensis SP1PR4] Length = 373 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/364 (27%), Positives = 177/364 (48%), Gaps = 38/364 (10%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL---LFFFSPGIYSVTSDLHV 64 ++++E S ++ + + ++G SRE + +++A ++ L F P Sbjct: 3 EDRSEKASEQRKKKSRDKGEGVRSRELNAAFAMMAGILVLGGSARRFVP----------- 51 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVI-----PGLLLFMMFGIGSYLIQRIPVLN 119 L A+A + L + H + L L A+R++I P L+ G+ L + Sbjct: 52 LWATAYREMLSALGHTEWTPESL-LDAARILILPTLGPVALVMGAAFCGALLSGMVQSGG 110 Query: 120 LN-HVKP---SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 L H + R++ +K+I S LV KS V G ++ + ++ + M Sbjct: 111 LQFHAEALAIKTTRLNPWSNLKQIASARALVRVSKSLVP---AGIVLALGISCLHGVM-- 165 Query: 176 FISANPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSY----HQWYSKLKMSKQEIK 230 +P ++L + T +LL A L V G+ Y W +LKMSKQE++ Sbjct: 166 ----DPMAVLSNFRLMTAFSASYALLLNAAWLMVAWAGFDYVMEWRSWNQRLKMSKQELR 221 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E K++ G+P +K R + I R+ + + SRAT++I NPTH+A+AL + P Sbjct: 222 QEHKEAAGDPQVKGRIRQIQRAMRKRRAKVDVSRATVVIVNPTHFAVALEFSFETMQPPR 281 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++AKG++L A ++R+ A +PI E P LARSL++ V + + IP Y AVA ++ +Y Sbjct: 282 VLAKGRDLHAHEIREEAMWAGVPIVENPLLARSLYRSVKVGNTIPFELYAAVAGILAFLY 341 Query: 351 HKKI 354 +++ Sbjct: 342 RQEV 345 >gi|269796379|ref|YP_003315834.1| flagellar biosynthesis protein FlhB [Sanguibacter keddieii DSM 10542] gi|269098564|gb|ACZ23000.1| flagellar biosynthesis pathway, component FlhB [Sanguibacter keddieii DSM 10542] Length = 422 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP F +L +GIK + L +K+ K ++VG ++ I++ +L + Sbjct: 120 LKPKFDHFNLVKGIKNTFGGQALWQGVKALAKTLVVGLVLYIAIQNLMPVLLTAGGLSVG 179 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++L A ++ +L + L +LD+ + K +MSK E+K E KQS G+P + Sbjct: 180 ALLSAAGGGIQALLWSAVAAGIALAILDLVVVMKRNRKKTRMSKYEVKQENKQSEGDPQL 239 Query: 243 KN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 K R K IA SR ++M+ + A +++ NPTH A+AL+Y + AP +VAKG +A Sbjct: 240 KGAIRSKQIAMSR--NRMIASVGDADVVLVNPTHVAVALKY-EAGTGAPRVVAKGAGHVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R++A E ++P+ + LAR+L I IP Y AVAQ++ Sbjct: 297 ARIREVAAEKSVPMISDVPLARALHGACEIGEEIPADLYAAVAQVL 342 >gi|89902466|ref|YP_524937.1| type III secretion exporter [Rhodoferax ferrireducens T118] gi|89347203|gb|ABD71406.1| type III secretion exporter [Rhodoferax ferrireducens T118] Length = 385 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 33/355 (9%) Query: 15 SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL 74 S +K++ AL++G SR+ + +L L +P ++ L VLL Sbjct: 13 SERKLQKALDDGQVSRSRDLGHLA-VLGTGALSLMALAPLMFD---RLRVLLRQQLSFDA 68 Query: 75 EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----VLNLNHVKPSFKRV 130 +S+ ++T + A+ +I G ++F + L+ I V +L + P F R+ Sbjct: 69 LAVSNPTTMITRMQDMATAGLI-GCVIFAAITTVAVLLSSIAAGGWVSSLKPIMPDFSRL 127 Query: 131 SLREGIKRIYSINNLVNFMK-SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 + G+ R+++ +K SFV +L IT+ T ++S+ H++ Sbjct: 128 NPLTGMGRMFTKEKFTEVLKMSFVAAML----ITLGTT--------YLSSTIHALAMLVL 175 Query: 190 FTVRKVLIMILLFIAT-----------LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 R L M+ ++ + + ++D+ S++KMS QE+K E K+S G Sbjct: 176 QPSRAALPMLTEWLTSGMALLLLVVLLVAMVDVPLQSFLHKSRMKMSHQEMKQEHKESDG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP +K + + R + A +A ++ NPTH+A+A++Y AP +V+KG +L Sbjct: 236 NPQMKGKLRQRQREISHGNSVGAVPKADFVLMNPTHFAVAIKYDDKTMRAPQVVSKGADL 295 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R IA + IP+ + P LAR+L+ ++ IP Y AVAQ++ IY K Sbjct: 296 LAMKIRDIAKNNAIPVLQSPMLARALYAHAELDQDIPASLYTAVAQVLAYIYRLK 350 >gi|163733157|ref|ZP_02140601.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149] gi|161393692|gb|EDQ18017.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149] Length = 362 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 96/353 (27%), Positives = 169/353 (47%), Gaps = 13/353 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ + +K+ +A +G S E +S L+ +L G+ + + Sbjct: 1 MSAPDDEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLVAILVSGESGLSHLGA 60 Query: 61 DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRL----VIPGLLLFMMFGIGSYLIQR 114 L V++ + Q D + V + + S L V P L + + + R Sbjct: 61 TLAVIIGQSAQIAPLFFDGAGTVPARGIIQATGSALLPIFVYPALAVML-----ALFATR 115 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V + V+P +VS+ K Y L F+ SF K+++ I+ I L M+ Sbjct: 116 GIVFAPSKVQPKLSKVSIISNAKNKYGRTGLFQFVLSFSKLMIYSAILAIFLYHRTSEMV 175 Query: 175 DFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 + P ++++ A + + LI +++ A + +D W + + K KMS++E+ DE Sbjct: 176 AALHTTPQYTVILLAKICI-EFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDET 234 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K S G+P +K ++ A+S ++ + A ++I NPTH+A+AL++ + APV VA Sbjct: 235 KNSEGDPYMKQERRQRAQSLAGSQVAVEVAAADVVIVNPTHFAVALKWERAPGQAPVCVA 294 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 KG + A ++R+IA E+ +PI +P AR+L + I P YKAVA I Sbjct: 295 KGVDETALRIREIAKENAVPIHSDPPTARALHSTTNVGDQIAPEHYKAVAAAI 347 >gi|254255044|ref|ZP_04948361.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124899689|gb|EAY71532.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 379 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/357 (26%), Positives = 167/357 (46%), Gaps = 22/357 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + +KTE + +K+ A G SR+ + L L L +P + Sbjct: 1 MSGGQSTGDKTEKATPQKLRKAKQRGQVARSRDIATAIGTLVSL-KLAIVLAP---AWLD 56 Query: 61 DLHVLLASATQRKLED--ISHIV--FLLTHLSLSASRLV----IPGLLLFMMFGIGSYLI 112 D L A++ + D H + +T L L L +P ++ G + Sbjct: 57 DFRRLFAASLVERFADGGAEHAMSTLFVTALLLIGKMLAPFAAVPACIVVGSLFPGGW-- 114 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTE-NY 170 V + + P +R++ G+KR+ S + + + K ++G T+ + + + Sbjct: 115 ----VFSHENFMPKAERLNPMSGLKRLVSGKHYMQLAITVAKATVLGATLWHVGRSSIDR 170 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 F L + A F V L+++ + +A ++D+ + +MSK+++K Sbjct: 171 FVGLQRVPFETALAGGAALF-VDATLVLVGVLVA-FAMIDVPLQRMLFMRGQRMSKRDVK 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 DE+KQS G P +K R + I R R + + A +++ NPTHYA+AL+Y ++ AP Sbjct: 229 DEMKQSEGKPEVKGRIRQIQRQMARRGIRKVVPDADVVLMNPTHYAVALKYDVSKAQAPY 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 +VAKG + A +R +A EH I + E P LAR+++ +N IP Y+AVA++++ Sbjct: 289 VVAKGIDETAHFIRDVAREHAIEVLELPPLARAIYHSSQVNQQIPAALYQAVAKVLF 345 >gi|170738283|ref|YP_001779543.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] gi|169820471|gb|ACA95053.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] Length = 357 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 179/357 (50%), Gaps = 36/357 (10%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ +K+++A +G +++ L +++L + LF F+ + + LH ++ Sbjct: 3 DEKTEQPTRRKLKEARKKGT--VAKSVDLVAAVLVLVSLALFTFA--WHPLLDALHQNIS 58 Query: 68 SA-----TQRKLEDI-SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 A ++R + + S ++ L + +++ + + L + +Q ++ + Sbjct: 59 RAIDFCGSERSMHTLWSVLMHELANGAIACCAISVAAALAAALSIGAQVGLQ----VSFD 114 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDFIS 178 V P R+S G+K+I+S L++ +K VK +++ + +SL F ++ Sbjct: 115 PVMPKMDRLSPAAGLKQIFSKRALIDLLKMSVKAVVIAAALWHVIVSL----FPLITSAM 170 Query: 179 ANP----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDE 232 A P IL+HA + ++ L + + W W +MSK E+K E Sbjct: 171 AEPLAALSQILWHALLKLLFAAAVLFLVVGV-----VDWKIQHWLMMRAQRMSKDEVKRE 225 Query: 233 IKQSYGNPIIKNRQKSIARSRIR---HKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +K+ G P +K+ ++ A+ + + A RA +++ NPTHYA+ALRY++ E P Sbjct: 226 LKEREGEPKLKHERRKRAKELVNGGGESLSGAVGRANVVVVNPTHYAVALRYVRGETPLP 285 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 V++AKG + A+++R +A + +PI P +AR+L+ +V + IP ++ VA ++ Sbjct: 286 VVLAKGIDDAAREIRALATQRGVPIVANPPVARALY-EVAEHRPIPSELFEVVAAIL 341 >gi|145298359|ref|YP_001141200.1| flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851131|gb|ABO89452.1| Flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp. salmonicida A449] Length = 281 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 5/198 (2%) Query: 161 IITISLTENYFTMLD--FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 I+TI T + D + A ++L + + + ++I+L A + ++ I + W Sbjct: 59 ILTIGFTLDRDQAFDPNAMGAMLPALLRELVYPLGLLWMLIILCCALIPIVAIDVPFQTW 118 Query: 219 --YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276 +LKM+KQE+KDE K S G P +K R + + +MM +A +IITNPTHY+ Sbjct: 119 NHTRQLKMTKQEVKDEFKDSEGKPEVKGRIRQLQMQMAMRRMMGDVPKADVIITNPTHYS 178 Query: 277 LALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 +AL+Y I AP +VAKG + IA K+R+IA E+ IPI P+L R++F I IP Sbjct: 179 VALKYDIAKPGAAPKVVAKGTDEIAMKIREIAREYEIPIMPSPALTRAIFHSTEIGHEIP 238 Query: 336 PVFYKAVAQLIYKIYHKK 353 + AVAQ++ IY K Sbjct: 239 EGLFAAVAQVLAYIYQLK 256 >gi|68164507|gb|AAY87236.1| predicted flagellar biosynthetic protein [uncultured bacterium BAC17H8] Length = 385 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 34/368 (9%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 EN KTE P+ ++++ A EG S+E +F+++ A L+ L SP + S Sbjct: 3 EENQDGQEKTEEPTQRRLQKAAEEGRILTSKEVMVFTTLAAGLV-LFMGLSPFVASGLDA 61 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASR----LVIPGLLLFMMFGIGSYLIQRIPV 117 L + F L L L R LVI L+ M I ++ + V Sbjct: 62 WGSLFRIDSG----------FNLDTLGLVKVRYAFWLVILATLVVGMPLIVVIILTQAAV 111 Query: 118 LNLNHVKPS--FK--RVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITI-SLTEN 169 LN + FK R+ G+KRI+S+ LV KS +K+ L +G ++ L + Sbjct: 112 GGLNFAAQAMNFKGNRIDPIAGLKRIFSVKGLVELAKSVLKVGLLFGIGALVIYHQLPQL 171 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 F +S + F V +LI +L+ A +D W H L+M+ +E+ Sbjct: 172 VFLSSSSLSQGVNRAAQAFPFLVGGLLIALLVIAA----IDYAWQKHTHTQSLRMTLKEV 227 Query: 230 KDEIKQSYGNPIIKNR------QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 KDE KQ+ G+P ++ + Q++ SR R + AT ++TNPTH+A+AL+Y Sbjct: 228 KDESKQTEGSPEVRAKIRRMQYQQAQESSRQREALGN-VGDATTVVTNPTHFAVALKYAA 286 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 + APV++A G+ +A ++ + A E + P LAR+L+ I I Y AVA Sbjct: 287 GQEGAPVVLAMGRGQMAMQIIERAKEARVRTLRIPMLARALYFTSEIGGEITEGLYNAVA 346 Query: 344 QLIYKIYH 351 ++ ++ Sbjct: 347 VVLAYVFR 354 >gi|111115097|ref|YP_709715.1| flagellar biosynthesis protein FlhB [Borrelia afzelii PKo] gi|110890371|gb|ABH01539.1| flagellar biosynthesis protein [Borrelia afzelii PKo] Length = 372 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 172/351 (49%), Gaps = 16/351 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ +K + A EG S E + S+L + S + LA Sbjct: 23 EGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFF--------FMLSYFALDLA 74 Query: 68 SATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIG-SYLIQRIPV---LNLNH 122 + + + +S ++ + + + + R ++ ++LF + ++ + I V + Sbjct: 75 AVFKEQASKLSEVMKMSVYAMGFAYIRSIMGYVVLFFFASLAVNFFVNIIQVGFFITFKS 134 Query: 123 VKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P + +VS R +S N KS +K++++ I + N + Sbjct: 135 LEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEY 194 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+ Sbjct: 195 TLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGD 254 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ + Sbjct: 255 PLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEM 314 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A ++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 315 ALTIKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|323530321|ref|YP_004232473.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1001] gi|323387323|gb|ADX59413.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1001] Length = 373 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 96/350 (27%), Positives = 173/350 (49%), Gaps = 24/350 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + KTE P+ K++ D +G S + A+ ++++ L + F + S+ S Sbjct: 3 EEKTEQPTDKRLRDTRKDGETSKSTDLVDAATMAAVVGVLAFAAANFGGALRSIVS---T 59 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L A+ R E + + L L A +++P + + + + + Q + V Sbjct: 60 ALEFASGRHDEPL--MFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVV 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN- 180 P K VS +G+KRI+S +++ +K +K ++G ++ +FT+ L I + Sbjct: 118 PDLKHVSPVDGVKRIFSWRTVIDLVKMVIKAAIIGAVM-------WFTIKWILPLIVGSL 170 Query: 181 --PHSILYHAFFT-VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P L F++ V KV + + + V+D+ + KLKMSK E+K E KQ Sbjct: 171 YQPLPELSKLFWSLVIKVFAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMD 230 Query: 238 GNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +K +AR + A +I NPTHYA+A+RY E+ P+++A+G Sbjct: 231 GDPKIKAERKKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGM 290 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++R+ A + N+PI P +AR+L+K V ++ IP ++ VA ++ Sbjct: 291 DESAAQLRRFARDANVPIIGNPPVARALYK-VGLDEPIPEELFETVAAIL 339 >gi|224534194|ref|ZP_03674772.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S] gi|224514296|gb|EEF84612.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S] Length = 372 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIESNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNIPLMENKLLARALYTNVKVNEEIPREYWEVVSKILVRVY 365 >gi|216263954|ref|ZP_03435948.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1] gi|215979998|gb|EEC20820.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1] Length = 372 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + +VS R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ +A ++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEMALTIKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|225164042|ref|ZP_03726327.1| type III secretion exporter [Opitutaceae bacterium TAV2] gi|224801348|gb|EEG19659.1| type III secretion exporter [Opitutaceae bacterium TAV2] Length = 369 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 178/362 (49%), Gaps = 24/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D D KTE PS K++ +A G + E + + A L G V Sbjct: 1 MAEQDQ-DQKTELPSEKRLSEAYERGQFAKTPELGIVFMLAAAFGALSMACEDGARRVAE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIPVLN 119 A+ +L + I L ++ + G L M+ +G+ L+ + Sbjct: 60 -----YATGIFEQLHTV-RISSGLVPAPVAMGAVTFAGALAPLMIASVGAALLSG-GIQT 112 Query: 120 LNHVKP---SFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V P FK L G R++S N LV+ F+K+ ++I SL T+L Sbjct: 113 GFRVTPKALGFKPEKLNPVTGFGRVFSKNTLVHGGIDFLKV----SVIAFSLWLAARTLL 168 Query: 175 -DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD-IGWSYHQWYS---KLKMSKQEI 229 D + P Y F R ++ ++ + + ++ I ++Y +W+ +L M++QE+ Sbjct: 169 GDPLFTAPVETAYLGEFIHRSLMALLARLLLAMGIIAAISYAY-EWFKTHRELMMTRQEV 227 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E +QS G+ ++K+ + +AR +R +M+ A A +++TNPTHYA+AL+Y + + AP Sbjct: 228 KEERRQSDGDALVKSALRRMARRLMRRQMLAAVPTADVVVTNPTHYAVALKYERGIDKAP 287 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 V++AKG +A +++ IA EH +P E+ ++AR LF + IP Y+AVA ++ + Sbjct: 288 VVLAKGDRRLALRIKAIAAEHEVPTVEDRAVARLLFATGEVGKPIPGELYQAVAGILAMV 347 Query: 350 YH 351 Y Sbjct: 348 YR 349 >gi|149926083|ref|ZP_01914346.1| Type III secretion component protein SctU [Limnobacter sp. MED105] gi|149825371|gb|EDM84582.1| Type III secretion component protein SctU [Limnobacter sp. MED105] Length = 353 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 163/341 (47%), Gaps = 12/341 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT-SDLHVLLA 67 KTE P+ KK++DA +G +S++A + +L + Y+ FF+ Y+ S+L L+ Sbjct: 4 EKTEKPTQKKLDDARKKGQVSVSKDAQILFKLL--MFYMFFFWLSQDYAARFSELLDLIV 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL---NHVK 124 +A ++ S +F S+ V + L + I + LI + L + Sbjct: 62 TAGLKQPWTFSESIF-----SMFFDLFVAITVPLVAVCAIAATLITWAQIGFLVSPEALT 116 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PSFK+ IK ++S +LV + S VK++++ + + +N M+ A Sbjct: 117 PSFKKFDAVSNIKNMFSKKSLVQLLLSIVKVLILSVVGYLVFKDNMGDMIYSYRAGLTQF 176 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 ++ ++ + L+ + V+D Y L+MS Q+I DE KQS GNP +K Sbjct: 177 FDVLVHVLKAIIFVSLIIFMVIAVIDWSVEYMHHIKNLRMSHQDIADERKQSMGNPQLKQ 236 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R K RS I + + + A I+ NPTH ++AL Y ++D P ++A G + A ++R Sbjct: 237 RMKREHRS-ILNSSLTRVAGAKAIVANPTHISVALDYEPGKHDLPYILAMGTDDEALRIR 295 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + A ++ IPI LAR L++ + I + AQ+ Sbjct: 296 EFAKKNGIPIIVNVKLARMLYQDCEEDEYIQREHLELAAQV 336 >gi|167820158|ref|ZP_02451838.1| type III secretion system protein [Burkholderia pseudomallei 91] Length = 318 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 147/280 (52%), Gaps = 12/280 (4%) Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 L +++ ++ ++LSA V+P L + + GIG ++Q ++L V P+ ++ Sbjct: 36 LVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPA 92 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 EG+K+++S + + +K VK ++V + ++ + + + +P L F R Sbjct: 93 EGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---R 148 Query: 194 KVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 ++L L+ +A L +L D+ + K+KM+K E+K E K G+P++K +K + Sbjct: 149 EILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRL 208 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+ A + Sbjct: 209 ARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDEAAIALRRAAQD 268 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 269 ANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307 >gi|219684572|ref|ZP_03539515.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr] gi|219685776|ref|ZP_03540587.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04] gi|219671934|gb|EED28988.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr] gi|219672715|gb|EED29743.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04] Length = 372 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + +VS R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLNSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|115377814|ref|ZP_01465002.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1] gi|115365146|gb|EAU64193.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1] Length = 269 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 A VI GL+ F+ G + ++ + P ++++ +GIK I+S +V +K Sbjct: 10 AGGAVIAGLVEFLQVG---------ALFTMDPLIPKLEKLNPIQGIKNIFSKKTVVEMIK 60 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + VKI + ++ + + ++ + + +L V +V + L ++ D Sbjct: 61 NLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLAVMGEMVYRVCTRVALVFLLFSIFD 120 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 I W + ++ MSK ++K E K+S G+P K +K + + + MEA A +I+T Sbjct: 121 IWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHRKQMHQEIMEGAQMEAVKDADVIVT 180 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NP H A+AL+Y + ++ AP ++AKG + A++++ IA E ++P LA +L + V + Sbjct: 181 NPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAIARESDVPTLRNVPLAHALLR-VDV 239 Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353 IP Y AVA+++ +Y K Sbjct: 240 GQDIPEELYDAVAEVLNFVYGLK 262 >gi|170767115|ref|ZP_02901568.1| EscU protein [Escherichia albertii TW07627] gi|170124553|gb|EDS93484.1| EscU protein [Escherichia albertii TW07627] gi|315617516|gb|EFU98122.1| conserved hypothetical protein [Escherichia coli 3431] Length = 317 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + + +KPS +++S++ +K I+S+ ++ KS K++++ I ++F Sbjct: 80 IFAVEKIKPSAQKISVKNNLKNIFSVKSIFELFKSVFKLVIIALIFYFMGHSYASEFINF 139 Query: 177 ISANPHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + N + L + F + VL LLF +V D + H+ K+KMSK E+K E Sbjct: 140 TNLNAYQTLVLVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKRE 195 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + GNP IK ++ + + ++T+I+ NPTH A+ L Y E P+++ Sbjct: 196 AKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVI 255 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VAQLI Sbjct: 256 ETGKDAKALQIIKLAERYDIPVIEDIPLARSLYKNINKGQYITEDFFEPVAQLI 309 >gi|51598532|ref|YP_072720.1| flagellar biosynthesis protein FlhB [Borrelia garinii PBi] gi|51573103|gb|AAU07128.1| flagellar biosynthesis protein [Borrelia garinii PBi] Length = 372 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + +VS R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +S + K+ ++F+A + VLD + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLNSGISIVLVLAYKICFFSVMFLAIVGVLDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++I NP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKDRMRVVLSTNLRVAIPQADVVIVNPEHFAVAIKWDSETMLAPRVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|45657253|ref|YP_001339.1| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600491|gb|AAS69976.1| flagellar protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 649 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 178/354 (50%), Gaps = 24/354 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILAC--LIYLL--FFFSPGIYSVTSDLH 63 + +TE S ++ + +GN P S E +LA L+YL+ +FF Y + +H Sbjct: 301 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIH 360 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-------GLLLFMMFGIGSYLIQRIP 116 + T E ++ LL + S L+ P G ++ + +G R Sbjct: 361 GV-GLRTDMSSESVTE---LLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRAL 416 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 N + ++P+FK+V + + L N KS K+ L+ + I +++++F +L Sbjct: 417 SFNFSRIRPNFKKV--------LPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLS 468 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + K+ +++ + + ++++D + +++ LKM+ E K E K+S Sbjct: 469 GEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKES 528 Query: 237 YGNPIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+ ++ R++ +AR + + KM+ A ++ITNPTH+A+AL Y + AP+++AKG Sbjct: 529 DGDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKG 588 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A + +IA E+ +P E+ AR L+++V + + +P FY+A+A ++ ++ Sbjct: 589 VDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 642 >gi|167915301|ref|ZP_02502392.1| type III secretion system protein [Burkholderia pseudomallei 112] Length = 312 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 147/280 (52%), Gaps = 12/280 (4%) Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 L +++ ++ ++LSA V+P L + + GIG ++Q ++L V P+ ++ Sbjct: 30 LVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPA 86 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 EG+K+++S + + +K VK ++V + ++ + + + +P L F R Sbjct: 87 EGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---R 142 Query: 194 KVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 ++L L+ +A L +L D+ + K+KM+K E+K E K G+P++K +K + Sbjct: 143 EILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRL 202 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+ A + Sbjct: 203 ARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRAAQD 262 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 263 ANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 301 >gi|89072287|ref|ZP_01158866.1| flagellar biosynthetic protein [Photobacterium sp. SKA34] gi|89051819|gb|EAR57271.1| flagellar biosynthetic protein [Photobacterium sp. SKA34] Length = 375 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 183/356 (51%), Gaps = 22/356 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ + D KTE + +KI A +G P +++ + + +A +++ F+F I + Sbjct: 1 MSQSTSQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVIVF--FYFQ--IDVIWQ 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPV 117 L+ + +D+ + L S + ++ +P L ++ I S L+ + Sbjct: 56 ALNGVFKLNMTMSRDDLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L Sbjct: 116 FYPAGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDTNLSRLLGMQ 175 Query: 178 S-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 + + +IL+H +L+ I LF+ L +DI + + +LKM+KQE+K Sbjct: 176 NLPLKQGVSLIMTILFHGI-----LLMGIALFLFGL--IDIPYQKWEHAKELKMTKQELK 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 +E K + GNP IK R + I + R ++ +A +A ++I NPTHYA+A++Y T ++A Sbjct: 229 EEFKTNEGNPEIKQRIRQIQQQFARRQIDKAVPKADVVIVNPTHYAVAIKYDTTLSEALF 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +VAKG + A ++ IA +H++ I P L R+++ I AIP Y AVA ++ Sbjct: 289 VVAKGIDETAMHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHIL 344 >gi|294828141|ref|NP_712789.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar Lai str. 56601] gi|293385988|gb|AAN49807.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar Lai str. 56601] Length = 646 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 178/354 (50%), Gaps = 24/354 (6%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILAC--LIYLL--FFFSPGIYSVTSDLH 63 + +TE S ++ + +GN P S E +LA L+YL+ +FF Y + +H Sbjct: 298 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIH 357 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-------GLLLFMMFGIGSYLIQRIP 116 + T E ++ LL + S L+ P G ++ + +G R Sbjct: 358 GV-GLRTDMSSESVTE---LLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRAL 413 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 N + ++P+FK+V + + L N KS K+ L+ + I +++++F +L Sbjct: 414 SFNFSRIRPNFKKV--------LPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLS 465 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + K+ +++ + + ++++D + +++ LKM+ E K E K+S Sbjct: 466 GEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKES 525 Query: 237 YGNPIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+ ++ R++ +AR + + KM+ A ++ITNPTH+A+AL Y + AP+++AKG Sbjct: 526 DGDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKG 585 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A + +IA E+ +P E+ AR L+++V + + +P FY+A+A ++ ++ Sbjct: 586 VDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 639 >gi|110677564|ref|YP_680571.1| flagellar biosynthesis protein FlhB [Roseobacter denitrificans OCh 114] gi|109453680|gb|ABG29885.1| flagellar biosynthetic protein FlhB [Roseobacter denitrificans OCh 114] Length = 362 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 11/249 (4%) Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 L+LF GI V V+P ++S+ K + L F+ SF K+I+ Sbjct: 109 LVLFATRGI---------VFAPTKVQPKLSKISVISNAKNKFGRTGLFQFVLSFSKLIIY 159 Query: 159 GTIITISLTENYFTMLDFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 I+ + L M+ + P ++++ A + + LI +++ A + +D W + + Sbjct: 160 SAILAVFLYHRTNEMVAALQTTPQYTVILLAKICI-EFLIYVVIVSAIIGGIDAIWQHFE 218 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277 K KMS++E+ DE K S G+P +K ++ A+S ++ + A ++I NPTH+A+ Sbjct: 219 HLRKNKMSRKEVMDETKNSEGDPYMKQERRQRAQSLAGTQVAVEVAAADVVIVNPTHFAV 278 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL++ +T APV VAKG + A ++R+IA E+ +PI +P AR+L I I P Sbjct: 279 ALKWDRTPGQAPVCVAKGVDETALRIREIATENAVPIHSDPPAARALHATTNIGDQIAPE 338 Query: 338 FYKAVAQLI 346 YKAVA I Sbjct: 339 HYKAVAAAI 347 >gi|94986993|ref|YP_594926.1| translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] gi|94731242|emb|CAJ54605.1| translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 360 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/345 (23%), Positives = 166/345 (48%), Gaps = 17/345 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSV-------TSD 61 +KTE P+ KK+ +A +G+ S++ + ++ +Y + + ++ T Sbjct: 7 DKTEPPTPKKLREAREQGDVAKSQDVAAAMTMFGASLYFIGMWQDVFSNLLNLIELPTKF 66 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 +H+ A + I+ I F ++IP + M + + L+Q + ++ Sbjct: 67 IHLPFEEALPATISGIASIAF----------SILIPIIATLMFLAVAADLMQIGVLFSVK 116 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P ++ ++ +++SI NL F+K+ +K+ ++ + I L+ + S N Sbjct: 117 SAIPKLDNLNPKKWFSKVFSIKNLGEFVKNILKVSVLTITVWIILSNYIKELFAIASGNI 176 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 S+ Y +R + + + + + + +D + Q+ + MSKQEIK E K G+P+ Sbjct: 177 WSLWYILGSVLRDLTLSVSMVFSVIACIDFMFQKWQYNKRQMMSKQEIKQEYKDMEGDPL 236 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK ++K + + + +A +++ NP HYA+A+ Y + PV++AKG+ L+A+ Sbjct: 237 IKGKRKQLHQEMAMQNPVNKVRKAKVVVVNPIHYAIAIDYEKGRTLLPVILAKGEGLLAQ 296 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +M +A E IP+ + LA SLF +S IP VA+++ Sbjct: 297 RMVAVAQEEGIPVMQNIPLAHSLFMDGIEDSYIPRNLIAPVAEVL 341 >gi|170690587|ref|ZP_02881754.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis C4D1M] gi|170145022|gb|EDT13183.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis C4D1M] Length = 373 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 175/352 (49%), Gaps = 28/352 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS-VTSDLH 63 + KTE P+ K++ D +G S + A+ ++++ L + F + S VT+ L Sbjct: 3 EEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVVGVLAFAAASFGGALRSIVTTALE 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 AS D + L L A +++P + + + + + Q + V Sbjct: 63 --FASGNH----DQPLMYGKLFDLGKQALIVIVPCVGAAALAAVAALMPQVGFQIATKPV 116 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN 180 P K VS +G+KRI+S +++ +K VK ++G ++ +FT+ L I + Sbjct: 117 VPDLKHVSPVDGVKRIFSWRTVIDLVKMIVKAAIIGVVM-------WFTIKWILPLIVGS 169 Query: 181 ---PHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 P L F++ ++ + + +FIA + V+D+ + KLKMSK E+K E KQ Sbjct: 170 LYQPLPELSKLFWSLLIKLFAVAVAVFIA-IGVIDVKLQRVLFLRKLKMSKDEVKRERKQ 228 Query: 236 SYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P IK +K +AR + A +I NPTHYA+A+RY E+ P+++A+ Sbjct: 229 MDGDPKIKAERKKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIAR 288 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + A ++R+ A + N+PI P +AR+L++ V I+ IP ++ VA ++ Sbjct: 289 GMDESAAQLRRFARDANVPIIGNPPVARALYR-VGIDEPIPEELFETVAAIL 339 >gi|167742987|ref|ZP_02415761.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|167828533|ref|ZP_02460004.1| type III secretion system protein [Burkholderia pseudomallei 9] gi|167906942|ref|ZP_02494147.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167923134|ref|ZP_02510225.1| type III secretion system protein [Burkholderia pseudomallei BCC215] Length = 318 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 147/280 (52%), Gaps = 12/280 (4%) Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 L +++ ++ ++LSA V+P L + + GIG ++Q ++L V P+ ++ Sbjct: 36 LVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPA 92 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 EG+K+++S + + +K VK ++V + ++ + + + +P L F R Sbjct: 93 EGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---R 148 Query: 194 KVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 ++L L+ +A L +L D+ + K+KM+K E+K E K G+P++K +K + Sbjct: 149 EILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRL 208 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+ A + Sbjct: 209 ARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAAQD 268 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 269 ANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307 >gi|167724018|ref|ZP_02407254.1| type III secretion system protein [Burkholderia pseudomallei DM98] Length = 318 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 146/278 (52%), Gaps = 12/278 (4%) Query: 76 DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135 +++ ++ ++LSA V+P L + + GIG ++Q ++L V P+ ++ EG Sbjct: 38 EMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEG 94 Query: 136 IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195 +K+++S + + +K VK ++V + ++ + + + +P L F R++ Sbjct: 95 LKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---REI 150 Query: 196 LIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 L L+ +A L +L D+ + K+KM+K E+K E K G+P++K +K +AR Sbjct: 151 LAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRLAR 210 Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311 + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+ A + N Sbjct: 211 ELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDEAAIALRRAAQDAN 270 Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 IPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 271 IPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307 >gi|284007636|emb|CBA73289.1| type III secretion inner membrane protein YscU,SpaS,EscU,HrcU,SsaU [Arsenophonus nasoniae] Length = 352 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/345 (26%), Positives = 173/345 (50%), Gaps = 17/345 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG--IYSVTSDLHVLL 66 KTE P+ K++ +A +G S E ++L + L + G +++ +L +L Sbjct: 6 EKTEKPTQKRMNEARKKGQVIKSNE---IVTVLKMAVILGYLIVEGHALFNAIGELIIL- 61 Query: 67 ASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNH 122 T R L D++ + + + L +V GL++ ++ I S ++Q P+ Sbjct: 62 ---TVRSLSLPIDVAAKTIIGSFIMLLLRFMV--GLVVVLIVTICLSCIVQTGPIWAHKS 116 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + SF ++++ + K+I+S+ NL F K+ +K+I++ T++ L + Y + ++ Sbjct: 117 LAFSFNKMNIIKNAKQIFSMKNLFEFGKNILKVIVL-TLVFYYLLDYYVNLFQYLPTCGI 175 Query: 183 SILYHAFFTVRKVLIM-ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 FT+ + L L+ + D G+ Y+ +LKMSK++ K E K + GNP Sbjct: 176 DCGVMVTFTLIQWLWGGFLVCYIVFAIADYGFQYYHVMKELKMSKEDTKREFKDTEGNPQ 235 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK +++ I R + ++ ++T+II NPTH + L Y P +V K Q+ +A Sbjct: 236 IKQKRREIQREITSNSVVANVRKSTVIIRNPTHIVVCLYYQPGITPLPQVVEKFQDNMAL 295 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + K+A + IP+ E LAR+LF+QV IP ++ VA+L+ Sbjct: 296 HIVKLAEKAGIPMVENILLARALFQQVETGQMIPESLFEPVAELL 340 >gi|217032176|ref|ZP_03437675.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128] gi|216946166|gb|EEC24775.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128] Length = 153 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 1/128 (0%) Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275 Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHY Sbjct: 5 RQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHY 64 Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL++ + E+ PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ IP Sbjct: 65 AVALKFDE-EHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIP 123 Query: 336 PVFYKAVA 343 ++AVA Sbjct: 124 EELFEAVA 131 >gi|224533751|ref|ZP_03674339.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a] gi|224513044|gb|EEF83407.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a] Length = 372 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S + N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|224533155|ref|ZP_03673755.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23] gi|224511882|gb|EEF82283.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23] Length = 372 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S + N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|260222456|emb|CBA32037.1| hypothetical protein Csp_D30120 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 384 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 123/235 (52%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V +L + P F R++ G ++S L++ K + ++ I + L M Sbjct: 114 VSSLKPLMPDFSRLNPLSGFANLFSKKKLLDTAKMALMTAILFVIAGLFLKSGMQEMAAM 173 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + + H + L ++LL I ++D+ ++KMS QE+K+E K+S Sbjct: 174 LLQPSPAAISHLTQWMTGGLGLMLLVILLAAMVDVPLQLFLHKDQMKMSHQEVKEEGKES 233 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP +K + + R + + A +A ++ NPTH+A+A+RY + AP +V+KG Sbjct: 234 DGNPQLKGKIRQKQREMAQKSSVGAVPKADFVVMNPTHFAVAIRYDEASMRAPRVVSKGA 293 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +L+A K+R +A +H+IP+ + P LAR+L+ ++ IP Y AVAQ++ +Y Sbjct: 294 DLLAMKIRDVAKQHSIPVLQSPMLARALYANAELDQDIPSTLYTAVAQVLAYVYR 348 >gi|307725656|ref|YP_003908869.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1003] gi|307586181|gb|ADN59578.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1003] Length = 388 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/351 (27%), Positives = 173/351 (49%), Gaps = 26/351 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + KTE P+ K++ D +G S + A+ +++L L + F + S+ + Sbjct: 25 EEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVLGVLAFAAAHFGGALRSIVNIALE 84 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++ + + L + L L A +++P + + + + + Q + V Sbjct: 85 FVSGSHDQPL-----MFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVV 139 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN- 180 P K VS +G KRI+S +++ +K VK ++G ++ +FT+ L I + Sbjct: 140 PDLKHVSPVDGFKRIFSWRTVIDLVKMIVKAAIIGAVM-------WFTIKWILPLIVGSL 192 Query: 181 --PHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P L F++ V+ + + +FI + V+D+ + KLKMSK E+K E KQ Sbjct: 193 YQPLPELSKLFWSLLVKLCAVAVAVFI-VIGVVDVKLQRVLFLRKLKMSKDEVKRERKQM 251 Query: 237 YGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P IK +K +AR + A +I NPTHYA+A+RY E+ P+++A+G Sbjct: 252 DGDPKIKAERKKLAREFATSAAPAQRVGFANALIVNPTHYAVAVRYAPAEHPLPLVIARG 311 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++R+ A + N+PI P +AR+L+K V I+ IP ++ VA ++ Sbjct: 312 MDESAAQLRRFARDANVPIIGNPPVARALYK-VGIDEPIPQELFETVAAIL 361 >gi|312148485|gb|ADQ31144.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi JD1] Length = 372 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S + N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|195941374|ref|ZP_03086756.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi 80a] gi|312149299|gb|ADQ29370.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi N40] Length = 372 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S + N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|225549000|ref|ZP_03769975.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a] gi|225370226|gb|EEG99664.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a] Length = 372 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S + N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|216264909|ref|ZP_03436901.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a] gi|221217819|ref|ZP_03589287.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a] gi|215981382|gb|EEC22189.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a] gi|221192496|gb|EEE18715.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a] Length = 372 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|304408584|ref|ZP_07390205.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS183] gi|307305412|ref|ZP_07585160.1| type III secretion protein, YscU/HrpY family [Shewanella baltica BA175] gi|304352405|gb|EFM16802.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS183] gi|306911715|gb|EFN42140.1| type III secretion protein, YscU/HrpY family [Shewanella baltica BA175] Length = 349 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 25/349 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67 KTE P+ K++ +A N G + + A + + + +I F + P + L L Sbjct: 3 EKTEKPTEKRLREARNRGQ--VIKSAEIVTGLQMAIILGYFLYEGPALVQAIMALIDLTI 60 Query: 68 SATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVK 124 +A LE + IV L+L + GL L ++F I G+ L+Q PV + Sbjct: 61 NAINLPLETAAEQIVGTFAMLALR----FLGGLTLVLVFTIVVGN-LVQTGPVWATESIM 115 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PS ++++ K++ S+ +L K+ VK+ ++ + Y+ + +++A + Sbjct: 116 PSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVF-------YYLLHRYVNAFQYLP 168 Query: 185 LYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY 237 L + + MI F+ + I Q YS +LKMSK + K E K S Sbjct: 169 LCGEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSE 228 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K +++ R + +AT+++ NPTH A+ L Y + E P ++ K ++ Sbjct: 229 GNPEMKQKRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAED 288 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A + +A + +PI E LAR+LFK V IP ++ VA+L+ Sbjct: 289 HMALHIVALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELL 337 >gi|225551932|ref|ZP_03772872.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1] gi|225370930|gb|EEH00360.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1] Length = 372 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|225550105|ref|ZP_03771065.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a] gi|225369217|gb|EEG98670.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a] Length = 372 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|15594617|ref|NP_212406.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi B31] gi|218249479|ref|YP_002374795.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7] gi|223888974|ref|ZP_03623565.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b] gi|226321590|ref|ZP_03797116.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26] gi|3023773|sp|Q44760|FLHB_BORBU RecName: Full=Flagellar biosynthetic protein flhB gi|1165257|gb|AAA85596.1| FlhB [Borrelia burgdorferi] gi|2688194|gb|AAC66676.1| flagellar biosynthesis protein (flhB) [Borrelia burgdorferi B31] gi|218164667|gb|ACK74728.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7] gi|223885790|gb|EEF56889.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b] gi|226232779|gb|EEH31532.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26] Length = 372 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|1185062|gb|AAB58971.1| flagellar export protein [Borrelia burgdorferi] Length = 372 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|224531929|ref|ZP_03672561.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116] gi|224511394|gb|EEF81800.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116] Length = 372 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S N KS +K++++ I + N + Sbjct: 130 ITFKSLEPKWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIFYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQTGISIVLVLAYKICFFSVIFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+A+++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ +A ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEMALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|330819403|ref|YP_004348265.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia gladioli BSR3] gi|327371398|gb|AEA62753.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia gladioli BSR3] Length = 359 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 178/351 (50%), Gaps = 28/351 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+ DA +G +S+ + L +I + + + F + G + S ++++ Sbjct: 3 DEKTEEPTDKKLRDARKDGQ--VSKSSDLADAI-SMTVAIGFVMAAGAHLRDSMRQLVMS 59 Query: 68 S----ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF------MMFGIGSYLIQRIPV 117 + T+ + D+ ++ ++L A + + M G+ L +P Sbjct: 60 ALDFVTTEHSIPDMFDRLYRFGGIALLAVVPLALAAAMAGLMGSAMQVGLQIALKPVMP- 118 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 NLN + P EG+K+I+SI ++ K VK L+ ++ + + F ++ Sbjct: 119 -NLNSLNPG-------EGLKKIFSIKTVIETAKMIVKAALIFAVMWV-VIRGLFPLVSGS 169 Query: 178 SANPHSILYHAFFTVRKVLIMI--LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 P + L ++ + L+MI ++FI + D+ + ++KMSK E+K E K Sbjct: 170 IYQPLAELSAMYWGILVKLMMIAAVIFI-VVGAGDVKLQKMLFMKQMKMSKDEVKREHKN 228 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P+IK +K IAR + + +RA +++ NPTHYA+ALRY E+ PV++AKG Sbjct: 229 DEGDPMIKGERKRIARE-MANSPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKG 287 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A +R+ A E +PI P +AR+L+K V ++ IP V ++ +A ++ Sbjct: 288 MDEAAAAIRRAAAEAEVPIVGNPPVARALYK-VGVDEPIPEVLFETIAAIL 337 >gi|77464899|ref|YP_354403.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides 2.4.1] gi|77389317|gb|ABA80502.1| flagellar biosynthesis pathway, component FlhB [Rhodobacter sphaeroides 2.4.1] Length = 359 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 174/355 (49%), Gaps = 24/355 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D D+K PS +K+E+A +G P S++ + ++ A L+ + T D+ Sbjct: 2 TDGEDDKPHEPSQRKLEEARRKGEVPRSQDL-VTAAAYAGLLAAAMTLGDRVLQRTGDIG 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI----------- 112 L R L+ L ++ + GLL + + + Sbjct: 61 STLLGQADR-----------LSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALL 109 Query: 113 -QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 QR V+ + + P +R+S G++ + LV+F+KSFVK++LVG ++ + Sbjct: 110 AQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSD 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + P L F + + L+++++ + ++D W + + +MS+QE+ + Sbjct: 170 DIFGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVE 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G+P +K +++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV Sbjct: 230 EAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVC 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 VAKG + +A ++R+ A E +PI +P AR+L V I I P Y+AVA + Sbjct: 290 VAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344 >gi|149200776|ref|ZP_01877751.1| Flagellar protein FlhB [Roseovarius sp. TM1035] gi|149145109|gb|EDM33135.1| Flagellar protein FlhB [Roseovarius sp. TM1035] Length = 384 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 176/364 (48%), Gaps = 25/364 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFS-PGIYSV 58 M++ D KTE P+ K+ ++A EG S E + ++ + LI ++ PG+ + Sbjct: 1 MADADDGQEKTEEPTQKRRQEAREEGRITTSTEVFVLVTLGMGALILSAGQWALPGLAGL 60 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + V+ + + + I H ++ + L+A PGL L ++ + L+ + + Sbjct: 61 WATGLVIDGAQSLDAMM-IGHTRDMMLWM-LAAG----PGLGLPLLAAV---LMAQSAMG 111 Query: 119 NLNHVKPSF----KRVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYF 171 LN + ++++ G+ R+ S+ LV+ +K+ +K+ L+ G ++ L Sbjct: 112 GLNFAPKALGFKPEKMNPMTGLGRMVSMKALVDLLKAVLKVTLLLAAGVLMLYPLLPALG 171 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + + A V L++ L+ IA LD+GW H ++MS+Q+IKD Sbjct: 172 SSSALAPGDAMVLFGTAMLRVLGGLLLGLVVIA---ALDLGWQIHSNTKSMRMSRQDIKD 228 Query: 232 EIKQSYGNP----IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E K+S G+P ++ RQ +R K + AT IITNPTH+A+ALRY + Sbjct: 229 ESKESEGSPEQKGAMRRRQMQASRRASERKALADVPMATAIITNPTHFAIALRYEPGTDT 288 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP ++A G+ +A+ + + + + P LAR+L+ I IP V + AVA ++ Sbjct: 289 APRILAMGKGPMAQAVIRRGRRAGVTTLQVPPLARALYFTGAIGREIPDVLFAAVAVILA 348 Query: 348 KIYH 351 ++ Sbjct: 349 HVWR 352 >gi|304414279|ref|ZP_07395647.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] gi|304283493|gb|EFL91889.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] Length = 353 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 98/350 (28%), Positives = 169/350 (48%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ KKI+DA +G S E + + ++ LIY +++T + + A+ Sbjct: 3 EKNEKPTPKKIKDAREKGQVIKSVEITSGAQLVVVLIY---------FTLTGNDLIDQAA 53 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM-MFGI-GSYLIQRIPVLNLNHVKPS 126 A R S I L ++++A R+ L M + GI G LI ++ ++ + P Sbjct: 54 ALIR-----SSIEQLSQPMNIAALRIGAEATALLMHITGILGGALIIITLLMGISQIGPL 108 Query: 127 FKRVSLREGIKRIYSINNLVNFM---------KSFVKIILVGTIITISLTENYFTMLDFI 177 + +L +RI INNL N + KS +KI+ + I L+ Y ++ Sbjct: 109 WAPKALSIKGERINPINNLRNLISFRSLFELGKSLIKIVSLSLIFGYLLS-RYAPTFGYL 167 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 S F T+ L+ L+ L +LD + H +LKMS +EIK E K S Sbjct: 168 SYCGSVCAMPVFGTLMSWLLGSLIACYLLFALLDYSFQRHSVMKQLKMSPEEIKREYKDS 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +++ + + + +R+T ++ NPTH+A+ L Y E P+++ KG Sbjct: 228 EGDPHIKQKRRELQQQIQSGSLSTNVNRSTAVVRNPTHFAVCLFYHPEEAPLPIVLEKGH 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + +AK + K+A +P+ E +LAR+L++ V + IP ++ VA L+ Sbjct: 288 HEMAKTIIKMAERAGVPVIENVALARALYRDVDCGNTIPEKLFEPVATLL 337 >gi|255019035|ref|ZP_05291161.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL F2-515] Length = 193 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 112/193 (58%) Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 +++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ + Sbjct: 1 MLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALL 60 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 I L+ + I ++ T++ + N L F + + + L IA + +LD + Sbjct: 61 LITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFY 120 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPT Sbjct: 121 QRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPT 180 Query: 274 HYALALRYIQTEN 286 H ++ +RY +T++ Sbjct: 181 HISVVMRYDKTKD 193 >gi|119953071|ref|YP_945280.1| flagellar biosynthesis protein FlhB [Borrelia turicatae 91E135] gi|119861842|gb|AAX17610.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135] Length = 373 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 184/359 (51%), Gaps = 32/359 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ +K + A EG S E ++ ++ C+++ +FFF Y + V Sbjct: 24 EGRTELPTEQKKQKAREEGQVLKSTEINM--AVTLCILFAVFFFMLS-YFAYELMDVFRW 80 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPV---LNLNHV 123 A KL +I I + L + R ++ +++F++ I +LI + V + + Sbjct: 81 QAG--KLPEIMSIS--IYSLGFAYIRSMLGYVIVFLLISFIVVFLINVVQVGFLITFKPI 136 Query: 124 KPSFKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENY--------FT 172 P + RV+ + IK + S + N KS KI ++ I I L N ++ Sbjct: 137 VPKWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISFIYYIMLRSNIGKISRMFEYS 196 Query: 173 MLDFISANPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + D IS S+ Y FF+V + + +++LD + ++ LKM+K+E+K Sbjct: 197 LEDGISV-ILSLAYRICFFSV--------IVLMGISILDYLFQRTRYIENLKMTKEEVKQ 247 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K+ G+P++++R + R + + +A ++ITNP H+A+A+++ AP + Sbjct: 248 ERKEMEGDPLLRSRMRERMREILNANLKVTVPQADVVITNPEHFAVAIKWDSNTMLAPRV 307 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +AKGQ+ IA +++IA E+NIP+ E LAR L+ V +N IP +++ V++++ K+Y Sbjct: 308 LAKGQDEIAFVIKQIARENNIPVMENKPLARDLYANVDVNEEIPREYWEIVSKILVKVY 366 >gi|126174201|ref|YP_001050350.1| secretion system apparatus protein SsaU [Shewanella baltica OS155] gi|125997406|gb|ABN61481.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS155] Length = 349 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/349 (26%), Positives = 162/349 (46%), Gaps = 25/349 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67 KTE P+ K++ +A N G + + A + + + +I F + P + L L Sbjct: 3 EKTEKPTEKRLREARNRGQ--VIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTI 60 Query: 68 SATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVK 124 +A LE + IV L+L + GL L ++F I G+ +Q PV + Sbjct: 61 NAINLPLETAAEQIVGTFAMLALR----FLGGLTLVLVFTIVVGNS-VQTGPVWATESIM 115 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PS ++++ K++ S+ +L K+ VK+ ++ + Y+ + +++A + Sbjct: 116 PSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVF-------YYLLHRYVNAFQYLP 168 Query: 185 LYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY 237 L + + MI F+ + I Q YS +LKMSK + K E K S Sbjct: 169 LCEEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSE 228 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K +++ R + +AT+++ NPTH A+ L Y + E P ++ K ++ Sbjct: 229 GNPEMKQKRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAED 288 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A + +A + +PI E LAR+LFK V IP ++ VA+L+ Sbjct: 289 HMALHIVALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELL 337 >gi|226320572|ref|ZP_03796132.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805] gi|226233991|gb|EEH32712.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805] Length = 372 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P + ++S R +S + N KS +K++++ I + N + Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + G+P++++R K R + + A +A ++ITNP H+A+ +++ AP ++AK Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVVIKWDSETMLAPKVLAK 309 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 GQ+ IA ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|85059286|ref|YP_454988.1| secretion system apparatus protein SsaU [Sodalis glossinidius str. 'morsitans'] gi|84779806|dbj|BAE74583.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 354 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 102/355 (28%), Positives = 164/355 (46%), Gaps = 35/355 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ K+ D EG S E + S + LA ++ F+ + TS L VL Sbjct: 2 GEKTEKPTEKRRRDRRKEGQVIKSNEIT--SGVQLAAILLFWHLFAEAVIERTSTLIVLS 59 Query: 67 ASATQRKLEDISHIVFL-----LTHLSLSASRLVIPGLLLFMMFG-------IGSYLIQR 114 S R FL L H+ LS++ L LF +FG +GS L+Q Sbjct: 60 ISLINRP--------FLFAFNQLLHVVLSSAGL------LFALFGGMLALATVGSVLLQI 105 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY---F 171 VL V +R++ +K+I+S+++LV KS K++++ T+I L Y F Sbjct: 106 GFVLASKAVGIKGRRINPVSNLKQIFSLHSLVELCKSTGKVVVL-TLIFAGLFYYYATTF 164 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 L F ++ L+ F R + ++ F L VLD + H + +MSK+E+K Sbjct: 165 QALPFCNSRCALPLFTTF--TRWMWFGLIGFYIVLGVLDYAFQAHNTLKQQRMSKEEVKQ 222 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G+P +K R+ + + R+ ++I NPTH A+ L Y + P + Sbjct: 223 EYKDAEGDPYMKQRRHEMQHEIQSGSLAHNVKRSAVVIRNPTHIAICLGYHPIDMPVPRV 282 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + KG A ++ +A +P+ E LAR+LF+ V IP ++ VA L+ Sbjct: 283 LDKGTAERAGQIVDLAQRAAVPVVENIPLARALFQHVGCGDRIPETLFEPVAVLL 337 >gi|194292000|ref|YP_002007907.1| sctu: non flagellar t3S system conserved inner membrane protein. flhb/hrpn/yscu/spas family [Cupriavidus taiwanensis LMG 19424] gi|193225904|emb|CAQ71851.1| SctU: non flagellar T3S system conserved inner membrane protein. flhB/hrpN/yscU/spaS family [Cupriavidus taiwanensis LMG 19424] Length = 344 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 167/345 (48%), Gaps = 18/345 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 K + +K+++A G P S + A +F +LA L L +F + S H Sbjct: 5 EKNLEATRRKLDEARKRGEVPRSSDVTSAVVFLGVLAGLWLLGRYF---VRLFQSLWHSA 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL----LFMMFGIGSYLIQRIPVLNLN 121 + S Q L D +V L +A+R ++ G+L L ++ GI +Q P++ Sbjct: 62 MGSVPQ-HLADQQMLV-----LGEAAARFLLMGVLPIVGLALVCGIVGAFLQVGPLVAFE 115 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +KP R++ EG+KR++++ NLVN K VKI+L+ ++ + + A P Sbjct: 116 QIKPDLARLNPAEGLKRMFAVRNLVNLAKILVKILLLAGLVYVLALGAIEDGVRTGYARP 175 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 IL + + ++ + + V+D HQ+ + +MS E + E K++ G+PI Sbjct: 176 AEILLLVAYIILRMCCWAAVIYLVMAVVDYVHERHQFMKRQRMSVDEYRREYKETQGDPI 235 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 + R+++ + E +T ++ + T YA+ALRY P +VAKG +A Sbjct: 236 MAGRRRAAFFEAAFFGVSERVRVSTAVVYS-TQYAVALRY-DGPGTLPRVVAKGSGQVAA 293 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R+ A ++ +P + LA+ L+ VP++ I ++ VA+L+ Sbjct: 294 RIRQAAADYLVPSAFDSDLAQRLYLNVPLDRFIDRTLFERVAELM 338 >gi|187918146|ref|YP_001883709.1| flagellar biosynthesis protein FlhB [Borrelia hermsii DAH] gi|119860994|gb|AAX16789.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH] Length = 373 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 185/358 (51%), Gaps = 30/358 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ +K + A +G S E + S++ +++ +FFF Y ++V Sbjct: 24 EGRTELPTEQKKQKAREDGQVLKSTEIN--SAVTLFILFAVFFFMLS-YFAQELMNVFRW 80 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPV---LNLNHV 123 A KL +I + + LS S + + +++F++ I S+LI I V + V Sbjct: 81 QAG--KLPEIMSVS--IYALSFSYIKPMFGYMIVFLLISFIVSFLINVIQVGFLITFKPV 136 Query: 124 KPSFKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENY--------FT 172 P + RV+ + IK + S + N KS KI ++ I I L N ++ Sbjct: 137 VPRWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISLIYYIMLKSNIGKISRMSEYS 196 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + D IS IL A+ ++ ++ + +++LD + ++ LKM+K+E+K E Sbjct: 197 LEDGISV----ILSLAY----RICFFSIIVLMGISILDYLFQRTRYIENLKMTKEEVKQE 248 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K+ G+P++++R + R + + +A ++ITNP H+A+A+++ AP ++ Sbjct: 249 RKEMEGDPLLRSRMRERMREILNTNLRVTVPQADVVITNPEHFAVAIKWDSNTMLAPKVL 308 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 AKGQ+ IA +++IA E+NIP+ E LAR L+ V +N IP +++ V++++ K+Y Sbjct: 309 AKGQDEIAFVIKQIARENNIPVMENKPLARELYANVDVNEEIPREYWEIVSKILVKVY 366 >gi|126463741|ref|YP_001044855.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC 17029] gi|126105405|gb|ABN78083.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17029] Length = 359 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 176/358 (49%), Gaps = 30/358 (8%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D ++K PS +K+E+A +G P S++ L+ + ++T Sbjct: 2 TDGEEDKPHEPSQRKLEEARRKGEVPRSQD----------LVTAAAYAGLLAAAMTLGDR 51 Query: 64 VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLI-------- 112 VL QR E S ++ LS ++ + GLL + + + Sbjct: 52 VL-----QRTGEIGSTLLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGG 106 Query: 113 ----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 QR V+ + + P +R+S G++ + LV+F+KSFVK++LVG ++ + Sbjct: 107 ALLAQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILR 166 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 +L + P L F + + L+++++ + ++D W + + +MS+QE Sbjct: 167 RSDDILGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQE 226 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 + +E K + G+P +K +++ A ++M++ ++A +++ NPTHYA+ALR+ + + A Sbjct: 227 LVEEAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRA 286 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 PV VAKG + +A ++R+ A E +PI +P AR+L V I I P Y+AVA + Sbjct: 287 PVCVAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344 >gi|221640820|ref|YP_002527082.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides KD131] gi|221161601|gb|ACM02581.1| Type III secretion exporter [Rhodobacter sphaeroides KD131] Length = 359 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 24/355 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D ++K PS +K+E+A +G P S++ + ++ A L+ + T D+ Sbjct: 2 TDGEEDKPHEPSQRKLEEARRKGEVPRSQDL-VTAAAYAGLLAAAMTLGDRVLQRTGDIG 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI----------- 112 L R L+ L ++ + GLL + + + Sbjct: 61 STLLGQADR-----------LSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALL 109 Query: 113 -QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 QR V+ + + P +R+S G++ + LV+F+KSFVK++LVG ++ + Sbjct: 110 AQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSD 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + P L F + + L+++++ + ++D W + + +MS+QE+ + Sbjct: 170 DIFGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVE 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G+P +K +++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV Sbjct: 230 EAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVC 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 VAKG + +A ++R+ A E +PI +P AR+L V I I P Y+AVA + Sbjct: 290 VAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344 >gi|160875393|ref|YP_001554709.1| secretion system apparatus protein SsaU [Shewanella baltica OS195] gi|160860915|gb|ABX49449.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS195] gi|315267593|gb|ADT94446.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS678] Length = 349 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 25/349 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67 KTE P+ K++ +A N G + + A + + + +I F + P + L L Sbjct: 3 EKTEKPTEKRLREARNRGQ--VIKSAEIVTGLQMAIILGYFLYEGPALVQAIMALIDLTI 60 Query: 68 SATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVK 124 A LE + IV L+L + GL L ++F I G+ L+Q PV + Sbjct: 61 HAINLPLETAAEQIVGTFAVLALR----FLGGLTLVLVFTIVVGN-LVQTGPVWAAESIM 115 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PS ++++ K++ S+ +L K+ VK+ ++ + Y+ + +++A + Sbjct: 116 PSMDKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVF-------YYLLHRYVNAFQYLP 168 Query: 185 LYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY 237 L + + MI F+ + I Q YS +LKMSK + K E K S Sbjct: 169 LCGEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSE 228 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K +++ R + +AT+++ NPTH A+ L Y + E P ++ K ++ Sbjct: 229 GNPEMKQKRRETQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAED 288 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A + +A + +PI E LAR+LFK V IP ++ VA+L+ Sbjct: 289 HMALHIVALAEKAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELL 337 >gi|75764710|ref|ZP_00744124.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487802|gb|EAO51604.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 271 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 139/250 (55%) Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 P L+L F + +Y+IQ + + +KP R++ + R++S +LV+ +KS + Sbjct: 11 PILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMG 70 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216 L+G + + +N ++ I N + L ++ + + IL+ + L+++D + Sbjct: 71 LIGYVAYVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRW 130 Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276 ++ +KM K+E+K E K + G+P +K ++K+ + ++ + + AT I+ NPTH + Sbjct: 131 EYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHIS 190 Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 + LRY + + AP++VAKG++ +A +R +A E IP+ E LARSL+ QV + IP Sbjct: 191 VVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPE 250 Query: 337 VFYKAVAQLI 346 Y AV +++ Sbjct: 251 DLYVAVIEVM 260 >gi|332559798|ref|ZP_08414120.1| FlhB2 [Rhodobacter sphaeroides WS8N] gi|332277510|gb|EGJ22825.1| FlhB2 [Rhodobacter sphaeroides WS8N] Length = 359 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 24/355 (6%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D ++K PS +K+E+A +G P S++ + ++ A L+ + T D+ Sbjct: 2 TDGEEDKPHEPSQRKLEEARRKGEVPRSQDL-VTAAAYAGLLAAAMTLGDRVLQRTGDIG 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI----------- 112 L R L+ L ++ + GLL + + + Sbjct: 61 STLLGQADR-----------LSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALL 109 Query: 113 -QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 QR V+ + + P +R+S G++ + LV+F+KSFVK++LVG ++ + Sbjct: 110 AQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSD 169 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + P L F + + L+++++ + ++D W + + +MS+QE+ + Sbjct: 170 DIFGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVE 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K + G+P +K +++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV Sbjct: 230 EAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVC 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 VAKG + +A ++R+ A E +PI +P AR+L V I I P Y+AVA + Sbjct: 290 VAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344 >gi|296125237|ref|YP_003632489.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM 12563] gi|296017053|gb|ADG70290.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM 12563] Length = 399 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 137/232 (59%), Gaps = 4/232 (1%) Query: 123 VKPSFKRV--SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP+FKR+ + +R++ S NL+N K K++++ + ++ + + + Sbjct: 159 LKPNFKRIAPTWSNFKERVFVSSQNLMNLAKILFKMVVISFLTFTTIYGKSTELFNMTNM 218 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 ++ FF V ++L +++F+ ++ D + Q+ + LKM+K E+K+E K+ G+ Sbjct: 219 ELPQAMHLFFFIVLEMLAKVIVFMIIVSAFDYFFQRRQYINSLKMTKHEMKEEFKEMEGD 278 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K++ + +AR + M++A A ++ITNPTH+A+AL+Y + + APV+ AKG + I Sbjct: 279 PLVKSQLQDMARKIVSRTMLKAVPEADVVITNPTHFAVALKY-ENGDYAPVVTAKGADHI 337 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A ++++IA E+++ I E LAR L+ V I IP + V++++ ++Y Sbjct: 338 ALRIKEIAKENDVQIVENKPLARELYFNVEIGQYIPEKLFHVVSRILGEVYR 389 >gi|322615094|gb|EFY12017.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619935|gb|EFY16808.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622247|gb|EFY19092.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627769|gb|EFY24559.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632886|gb|EFY29630.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636623|gb|EFY33326.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641184|gb|EFY37826.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644881|gb|EFY41414.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650283|gb|EFY46697.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655856|gb|EFY52158.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660182|gb|EFY56421.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665252|gb|EFY61440.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669509|gb|EFY65657.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673435|gb|EFY69537.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677363|gb|EFY73427.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679974|gb|EFY76013.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687446|gb|EFY83418.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194101|gb|EFZ79300.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198582|gb|EFZ83683.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202908|gb|EFZ87943.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208628|gb|EFZ93566.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211164|gb|EFZ96011.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217605|gb|EGA02320.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218954|gb|EGA03464.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223784|gb|EGA08088.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229407|gb|EGA13530.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232630|gb|EGA16726.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240332|gb|EGA24376.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242679|gb|EGA26700.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245890|gb|EGA29878.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323256473|gb|EGA40206.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260036|gb|EGA43661.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323271476|gb|EGA54897.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 352 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I +L+AS Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIAS 55 Query: 69 AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120 T Q + S+ + LTH + + + LLF+ G+ GS +Q V+ Sbjct: 56 ITFTLQLVNKPFSYALTQLTHALIES----LTSALLFLGAGVIVATVGSVFLQVGGVIAS 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + ++ K+I+S++++V KS +K+I++ I Y+ F A Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167 Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P+ L V ++ + ++ F + +LD + Y++ LKMSK ++K E K Sbjct: 168 PYCGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|83747856|ref|ZP_00944889.1| HrcU [Ralstonia solanacearum UW551] gi|207739220|ref|YP_002257613.1| hrp protein hrcu [Ralstonia solanacearum IPO1609] gi|83725503|gb|EAP72648.1| HrcU [Ralstonia solanacearum UW551] gi|206592593|emb|CAQ59499.1| hrp conserved protein hrcu [Ralstonia solanacearum IPO1609] Length = 354 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 169/352 (48%), Gaps = 28/352 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+EDA +G ++ A L ++++ LL + + + LA Sbjct: 3 DEKTEQPTDKKLEDAHKDGET--AKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLA 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + L H++L + +P +F + + Q VL+ V+ Sbjct: 61 LDVDSSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELKM 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175 ++ G+KRI+S++++++ +K +K +IL+ I+ + Y +++D Sbjct: 121 NAINPASGLKRIFSMSSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAA----YQSVMD 176 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 I+ ++L VR + LF+ L D G + +MSK E+K E K Sbjct: 177 -IAEIGMTLL------VRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228 Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AK Sbjct: 229 SEGDPHIKGERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAK 288 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + A +R+ A IPI P LAR+L++ V + A+P ++ VA+++ Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVL 339 >gi|167568047|ref|ZP_02360963.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis EO147] Length = 377 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 33/353 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----------FFSPGIYS 57 KTE P++KK+ DA +G S E + + L Y LF I Sbjct: 3 EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGAHLLQAFEALVDVSIAV 62 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V D A+AT R + + L +L + LVI ++ + IG P+ Sbjct: 63 VNDDF----AAATARWTSALGAV---LIRFTLGMAVLVIAMTVVAAIAQIG-------PL 108 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L + +KPS +++ +K+++S+ +L F KS K+ ++ I L Y L F+ Sbjct: 109 LAVEALKPSLDKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIF-FYLIRQYAPSLQFL 167 Query: 178 SANPHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 P + ++L ++ F + D + + +L MS ++IK E Sbjct: 168 ---PLCSVECGLAVSTQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEF 224 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K S GNP IK++++ I R + +++T+++ NPTH A+ L Y + E P ++ Sbjct: 225 KNSEGNPEIKHKRREIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIE 284 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G++ +A + +A +P+ E LAR+L ++ + IPP ++ VA L+ Sbjct: 285 IGRDKLALHIVALAERERVPVVENVPLARALANRLDVGQRIPPDLFEPVAHLL 337 >gi|207724585|ref|YP_002254982.1| hrp protein hrcu [Ralstonia solanacearum MolK2] gi|206589807|emb|CAQ36768.1| hrp conserved protein hrcu [Ralstonia solanacearum MolK2] Length = 354 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 168/352 (47%), Gaps = 28/352 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+EDA +G ++ A L ++++ LL + + + LA Sbjct: 3 DEKTEQPTDKKLEDAHKDGET--AKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLA 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + L H++L + +P +F + + Q VL+ V+ Sbjct: 61 LDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELKM 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175 ++ G+KRI+S+ ++++ +K +K +IL+ I+ + Y +++D Sbjct: 121 NAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAA----YQSVMD 176 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 I+ ++L VR + LF+ L D G + +MSK E+K E K Sbjct: 177 -IAEIGMTLL------VRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228 Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AK Sbjct: 229 SEGDPHIKGERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPQEYGLPRIIAK 288 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + A +R+ A IPI P LAR+L++ V + A+P ++ VA+++ Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVL 339 >gi|225619293|ref|YP_002720519.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae WA1] gi|225214112|gb|ACN82846.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae WA1] Length = 400 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 137/232 (59%), Gaps = 4/232 (1%) Query: 123 VKPSFKRV--SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP+FKR+ + +R++ S NL+N K K+I++ + ++ + + I+ Sbjct: 160 LKPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVISLLTFTTIYGKRTELFNMINM 219 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + FF V ++L +++F+ ++ D + Q+ + LKM+K E+K+E K+ G+ Sbjct: 220 GLSQAMNLFFFIVLEMLAKVIIFMIIVSAFDYFFQKRQYINSLKMTKHEMKEEFKEMEGD 279 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K++ + +AR + M+++ A ++ITNPTH+A+AL+Y + + AP++ AKG + I Sbjct: 280 PLVKSQLQEMARKIVSRTMLKSVPEADVVITNPTHFAVALKY-ENGDYAPIVTAKGADHI 338 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A K+++IA ++++ I E LAR L+ V + IP + V++++ ++Y Sbjct: 339 ALKIKEIARQNDVQIVENKPLARELYYNVELGQYIPEKLFHVVSRILGEVYR 390 >gi|300697466|ref|YP_003748127.1| Hypersensitivity response secretion protein hrcU, type III secretion exporter [Ralstonia solanacearum CFBP2957] gi|299074190|emb|CBJ53735.1| Hypersensitivity response secretion protein hrcU, Type III secretion exporter [Ralstonia solanacearum CFBP2957] Length = 354 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 168/352 (47%), Gaps = 28/352 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+EDA +G ++ A L ++++ LL + + + LA Sbjct: 3 DEKTEQPTDKKLEDAHKDGE--TAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLA 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + L H++L + +P +F + + Q VL+ V+ Sbjct: 61 LDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELKM 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175 ++ G+KRI+S+ ++++ +K +K +IL+ I+ + Y +++D Sbjct: 121 NAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAA----YQSVMD 176 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 I+ ++L VR + LF+ L D G + +MSK E+K E K Sbjct: 177 -IAEIGMTLL------VRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228 Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AK Sbjct: 229 SEGDPHIKGERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPDEYGLPRIIAK 288 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + A +R+ A IPI P LAR+L++ V + A+P ++ VA+++ Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVL 339 >gi|194734066|ref|YP_002114435.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709568|gb|ACF88789.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 352 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I +L+AS Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIAS 55 Query: 69 AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120 T Q + S+ + LTH + + + LLF+ G+ GS +Q V+ Sbjct: 56 ITFTLQLVNKPFSYALTQLTHALIES----LTSALLFLGAGVIVATVGSVFLQVGVVIAS 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + ++ K+I+S++++V KS +K+I++ I Y+ F A Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167 Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P+ L V ++ + ++ F + +LD + Y++ LKMSK ++K E K Sbjct: 168 PYCGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|226327763|ref|ZP_03803281.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198] gi|225203467|gb|EEG85821.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198] Length = 139 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 7/133 (5%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M++QEIKDE KQ G+P +K R + + R +MM A +I+TNPTHYA+AL+Y Sbjct: 1 MTRQEIKDEFKQQEGDPQLKARIRQQQHAMSRRRMMADVPNADVIVTNPTHYAVALQY-- 58 Query: 284 TEND---APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 ND AP ++AKG IA K+++I E+ IP+ E P LAR+L++ I AIP Y Sbjct: 59 --NDKMTAPKVLAKGAGAIALKIKEIGAENRIPLLEAPPLARALYRHSEIGHAIPSTLYA 116 Query: 341 AVAQLIYKIYHKK 353 AVA+++ +Y K Sbjct: 117 AVAEVLAWVYQLK 129 >gi|282891999|ref|ZP_06300476.1| type III secretion inner membrane protein SctU [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498041|gb|EFB40383.1| type III secretion inner membrane protein SctU [Parachlamydia acanthamoebae str. Hall's coccus] Length = 356 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 17/346 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYL----LFFFSPGIYSVTSDLH 63 KTE + KK+ DA N+G S++ S F+ I++ + L F G ++V + H Sbjct: 3 EKTEKATPKKLRDARNKGQVAKSQDLPSAFTFIVSIWVTLAASKFLFDHLGSFTVMT-FH 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + + D+ + LT + +++ IP L + + G+ + P+ L Sbjct: 62 QIAKGSLDTAIPDL--YIQGLTEIFITS----IPILGMVSVIGVLINFLVVGPMFALEVF 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS--ANP 181 K K+ +K + + LV +KS +KI + I+ + ++ ++ +S + Sbjct: 116 KFDIKKFDPISNLKSKFKLKTLVELLKSVLKISIACYIVYDVMWKSLPVLIRAVSLPIDA 175 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 ++++AF + +V+I + LF + V D + + S++KM K E+K E K S G+P Sbjct: 176 SLMVFYAF--LMEVVIKVGLFFIIIAVADFIYQKKTFASEMKMEKFEVKQEYKNSEGDPQ 233 Query: 242 IKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK+++K IA+ + RA ++TNPTH A+A+ Y + + AP ++AKG++ +A Sbjct: 234 IKSKRKQIAQEIAYQEGPRGGVKRAQAVVTNPTHLAIAIGYKKDYDAAPFVLAKGEDALA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +++ K A E N+P+ LA L+++ + +P Y+ +A+++ Sbjct: 294 ERIIKYAEEFNVPVVRNIKLAHKLWEEADVYEFVPEDTYELIAEIL 339 >gi|238023710|ref|YP_002907942.1| type III secretion system protein HrcU [Burkholderia glumae BGR1] gi|237878375|gb|ACR30707.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia glumae BGR1] Length = 352 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 16/345 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+ DA +G A S+ + L +I + + F + + L+ Sbjct: 3 DEKTEEPTDKKLRDARKDGQA--SKSSDLADAI--SMTAAIGFVIAASAHLRDSMRQLVV 58 Query: 68 SA-----TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 SA T L D+ ++ ++L A + L + G+ +Q + L Sbjct: 59 SALDFVSTDHSLPDMFDRLYRFGGIALLAVVPL---ALAAALAGVMGSAMQVGLQIALKP 115 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V P+ ++ EG+K+I+S+ ++ +K VK L+ ++ + + ++ P Sbjct: 116 VMPNLNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWV-VVRGLIPLVSGAIYQPL 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLT-VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + L ++ + L+MI I L D+ + ++KMSK E+K E K G+P+ Sbjct: 175 AELSAMYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPM 234 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK ++ IAR + + +RA +++ NPTHYA+ALRY E+ PV++AKG + A Sbjct: 235 IKGERRRIARE-MANAPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAA 293 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R+ A E +PI P +AR+L+K V ++ IP ++ +A ++ Sbjct: 294 AIRRAAAEAEVPIVGNPPVARALYK-VGLDEPIPDALFETIAAIL 337 >gi|255030633|ref|ZP_05302584.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28] Length = 197 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 102/183 (55%) Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 I ++ T++ + N L F + + + L IA + +LD + + + L+ Sbjct: 4 IGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLR 63 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY + Sbjct: 64 MSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDK 123 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 T++ AP L+ KG++ +A +R++A +P+ LARS++ + I YK V Sbjct: 124 TKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI 183 Query: 344 QLI 346 +++ Sbjct: 184 EVM 186 >gi|254499123|ref|ZP_05111813.1| putative flagellar biosynthetic protein FlhB [Legionella drancourtii LLAP12] gi|254351662|gb|EET10507.1| putative flagellar biosynthetic protein FlhB [Legionella drancourtii LLAP12] Length = 361 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/360 (26%), Positives = 178/360 (49%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 ++ N KTE + K++ A +G S E + S+L L + + ++ + Sbjct: 5 LAGNYVMSEKTEKATPYKLQKAKEKGQVSKSAELTTCISLLVLLGMMSALWPKQLHEIQE 64 Query: 61 DL-HVL-LASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L H+L LA+ Q L++I+H+ F+L L + G+L ++ + L Q V Sbjct: 65 MLRHILYLAAQMQFSLDNINHLHQFILMQLLHQWLPFALAGVLAIIL----ANLTQSGIV 120 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P FKR+++ +G K+++SI KS +K++ + + +L Sbjct: 121 WSTTPLVPDFKRLNIVQGFKKLFSIKTCFEAAKSTLKLMSTFIFLFFAFKHQLTNILPLA 180 Query: 178 ---SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +A ++ H ++ L+++L +A L W + + +MSKQE+KDE K Sbjct: 181 LTPTAQHPGLMMHFLLSLIFQLLLLLSLLAVLDKFYTRWKFAK---DQRMSKQEVKDEYK 237 Query: 235 QSYGNPIIKNR-QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 Q G+P IK++ ++ + R + ++ A +IITNPTH A+AL+Y +T AP +V Sbjct: 238 QREGDPKIKSKIKQLQQQLRQKTASLKQVKTADVIITNPTHLAIALKYDRTSMPAPKVVC 297 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K Q + +++++A +H +PI E S AR L+ V +N I Y A + +IY ++ Sbjct: 298 KAQGEMVSQVKELARKHGVPIIENKSFARLLYHSVELNQWINKELYPFAAAIFKEIYARR 357 >gi|261885614|ref|ZP_06009653.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 266 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 144/276 (52%), Gaps = 28/276 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTSDLHVL 65 KTE P+ KK+EDA N+GN S++ S F ++L A L+ L+ F + ++ L Sbjct: 6 EKTEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVNLYLYYQGL 65 Query: 66 LASATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + R+L F +T H L +++P + M+ GI S ++Q + + + Sbjct: 66 IGVEITREL------FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTVEPIM 119 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITISLTENYFTMLDFISANPHS 183 P+F ++ +GI ++S+ L++ VKIIL V + ++ ++ L F+ PH+ Sbjct: 120 PNFSKIDPIKGIANLFSLKKLIDA----VKIILKVSAVFGVA----FYFFLQFVKELPHT 171 Query: 184 ILYHAF----FTVRKVLI----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 I + F + K+LI M+LLF+ + + D+ +Q++ L+MSKQE+KDE KQ Sbjct: 172 IFFSMFNQLLWLKEKMLILAGVMLLLFL-IIAIADVFIVRYQYFKGLRMSKQEVKDEFKQ 230 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 G+P +K R + + R +MM+ A ++ITN Sbjct: 231 MEGDPKVKGRIRQLQMQAARKRMMQNIPTADVVITN 266 >gi|203284193|ref|YP_002221933.1| flagellar biosynthesis protein [Borrelia duttonii Ly] gi|201083636|gb|ACH93227.1| flagellar biosynthesis protein [Borrelia duttonii Ly] Length = 373 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 95/351 (27%), Positives = 178/351 (50%), Gaps = 16/351 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ ++ + A EG S E + SSI +++ +FFF ++ +L + Sbjct: 24 EGRTEVPTEQRKQKARREGQVLKSIEIN--SSISLFILFAVFFFMLSYFA--QELMDIFK 79 Query: 68 SATQRKLEDISHIVFLLTHLSLSA-SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + E +S ++ L+ + R V ++ + G ++Q V+ L + P Sbjct: 80 WQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPIMPK 139 Query: 127 FKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + R++ + +K + S++ N KS +KI ++ I I L N + IS P Sbjct: 140 WDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSN----IGKISKMPEY 195 Query: 184 ILYHAFFTVRKVLIMILLF----IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L + + I F + L+VLD + ++ LKM+K+EIK E K+ G+ Sbjct: 196 SLEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGD 255 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++++R + R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ I Sbjct: 256 PLLRSRMRERMREILNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEI 315 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A +++IA E+N+ I E LAR L+ V IN IP +++ V++++ K+Y Sbjct: 316 AFVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366 >gi|200389631|ref|ZP_03216242.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602076|gb|EDZ00622.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 352 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I +L+ S Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIES 55 Query: 69 AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120 T Q + S+ + L+H+ + + + +LLF+ G+ GS +Q V+ Sbjct: 56 ITFTLQLVNKPFSYALTQLSHVLIES----LASVLLFLGAGVIVATVGSVFLQVGVVIAS 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + ++ K+I+S++++V KS +K+I++ I Y+ F A Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167 Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P+ L V ++ + +++F + +LD + Y++ LKMSK ++K E K Sbjct: 168 PYCGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|83716504|ref|YP_438366.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis E264] gi|167614812|ref|ZP_02383447.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis Bt4] gi|257141397|ref|ZP_05589659.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis E264] gi|83650329|gb|ABC34393.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis E264] Length = 379 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 166/360 (46%), Gaps = 17/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L +L +P + Sbjct: 1 MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KILVLLAPSWLAEFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS--LSAS-----RLVIPGLLLFMMFGIGSYLIQ 113 L +L L D++ L S L AS +++ P ++ + +GS L Sbjct: 59 ALFLL-------DLVDVTGDGALANAWSAALPASLALFLKMIAPFFVVPLCVVLGSLLPG 111 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 +L+ H+KP F R++ + R+ S + F S +K + + ++ Sbjct: 112 GW-MLSGAHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAF 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L L F + + + + D+ + + +M+KQE+KDE Sbjct: 171 LRLQHLPLQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G P +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++A Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 291 KGVDDMALAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|167576637|ref|ZP_02369511.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis TXDOH] Length = 379 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 166/360 (46%), Gaps = 17/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L +L +P + Sbjct: 1 MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KILVLLAPSWLAEFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS--LSAS-----RLVIPGLLLFMMFGIGSYLIQ 113 L +L L D++ L S L AS +++ P ++ + +GS L Sbjct: 59 ALFLL-------DLVDVTGDGALANAWSAALPASLALFLKMIAPFFVVPLCVVLGSLLPG 111 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 +L+ H+KP F R++ + R+ S + F S +K + + ++ Sbjct: 112 GW-MLSGAHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAF 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L L F + + + + D+ + + +M+KQE+KDE Sbjct: 171 LRLQHLPLQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G P +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++A Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 291 KGVDDMALAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|34498461|ref|NP_902676.1| flagellar biosynthesis protein FlhB [Chromobacterium violaceum ATCC 12472] gi|34104316|gb|AAQ60675.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] Length = 379 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 172/367 (46%), Gaps = 44/367 (11%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-L 66 D+KTE + +++ A +G P S++ + + L + ++F+ +PG L L Sbjct: 7 DDKTEKATPQRLRKAREQGQVPRSKDLAA-ALGLLLALKMMFWLAPGWLDDFRQLFALAF 65 Query: 67 AS-ATQRKLEDISHIVF---LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 AS + Q LE+ +F LL + + A VIP +L + G + V LN Sbjct: 66 ASLSGQGALENSLSKLFGGTLLLLIKMLAPLAVIPLTMLLLSLFPGGW------VFVLNQ 119 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P F+R++ + R+ S + KS K +++G ++ Y D + Sbjct: 120 ISPKFERMNPLAHLSRLASPKHASEIGKSIAKALVLGWLL-------YRVASDAL----- 167 Query: 183 SILYHAFFTVRKVLIMILLFIAT----------------LTVLDIGWSYHQWYSKLKMSK 226 H FF + + ++ L A + D+ + + +MSK Sbjct: 168 ----HDFFALHSMPLLPTLAGAADLLLSCLLKLAAVFLLFALADLPLQVFLFLKQQRMSK 223 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QEIK+E K + G P ++ R + + + + + +A A +II NP+HYA+AL+Y + Sbjct: 224 QEIKEEHKNTEGRPEVRQRIRQLQQQMAQRGVRKALPGADVIIVNPSHYAVALKYDENRA 283 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP +VAKG + +A +R++A E + + P LAR+++ +N IP Y+AVAQ++ Sbjct: 284 EAPFIVAKGVDEMALYIRQLAEEMKLTVLPLPPLARAVYHTTQVNQQIPAPLYRAVAQVL 343 Query: 347 YKIYHKK 353 + K Sbjct: 344 TYVLQLK 350 >gi|198243973|ref|YP_002215710.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938489|gb|ACH75822.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623457|gb|EGE29802.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 352 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 29/351 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY----SVTSDLHV 64 KTE P+ KK+ D EG S E + ++A +Y FF I S+T L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ- 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLN 119 L+ L +SHI L+ L+ +LLF+ G+ GS +Q V+ Sbjct: 62 LVNKPFSYALTQLSHI--LIESLA---------SVLLFLGAGVIVATVGSVFLQVGVVIA 110 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + ++ K+I+S++++V KS +K+I++ I Y+ F A Sbjct: 111 SKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RA 166 Query: 180 NPHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 P+ L V ++ + ++ F + +LD + Y++ LKMSK ++K E K Sbjct: 167 LPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKD 226 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 G+P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG Sbjct: 227 LEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKG 286 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 287 SDAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|261246628|emb|CBG24438.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 352 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + +++F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEYKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|167905062|ref|ZP_02492267.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC 13177] Length = 379 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 17/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L +L +P + Sbjct: 1 MTNQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KMLVLLAPSWLAEFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------RLVIPGLLLFMMFGIGSYLIQ 113 L +L +L D++ L S++ +++ P ++ + +GS L Sbjct: 59 ALFLL-------ELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPG 111 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 +L+ +KP F R++ + R+ S + F S +K + + ++ Sbjct: 112 GW-ILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAF 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L L F + + + + D+ + + +M+KQE+KDE Sbjct: 171 LRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G P +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++A Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 291 KGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|238913175|ref|ZP_04657012.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 352 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLVALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S+++LV KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSLVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLVCGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QASYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|146309439|ref|YP_001189904.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp] gi|145577640|gb|ABP87172.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp] Length = 377 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 101/367 (27%), Positives = 182/367 (49%), Gaps = 30/367 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---- 56 MSE ++ KTE S+ K++ + +G S++ S S+LA L L F S G++ Sbjct: 1 MSEQNSGQEKTEEASAHKLKKSKEDGQVARSKDLSTTISLLATLFILKF--SAGLFLEGL 58 Query: 57 SVTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 S + L + ++ L+D+ ++ +L + L A L+ L++ + G + Sbjct: 59 SDSFRLSYIQFGHSEIGLDDLDTLLGYNMLVFIKLLAPMLLTSVLVVALSLVPGGW---- 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI--------ILVGTIITISL 166 V + + P +++ G+ RI+S N +KS +K+ +LV + + Sbjct: 115 --VFSAKNFAPKLSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPELI 172 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 +++ ISA + T +L ++L+F+ + +DI + + K++M+K Sbjct: 173 ALQRSSVVQAISAALN-------LTFNLILCLMLVFV-LFSFIDIPLQRYFFLKKMRMTK 224 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE K+E K G P +K R K + R ++ ++ + A +II NPTHYA+AL+Y + Sbjct: 225 QERKEEHKNQEGRPEVKARIKQLQRQMLQRQISKVIKNADVIIVNPTHYAVALKYDSKKA 284 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP ++AKG + A MR++A +H + + E P LAR+++ IN IP Y AVA ++ Sbjct: 285 AAPFVLAKGVDETALYMRQMAKKHELEVLEIPPLARAIYFTTQINQQIPAPLYTAVAHVL 344 Query: 347 YKIYHKK 353 I K Sbjct: 345 TYILQLK 351 >gi|126442503|ref|YP_001061219.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668] gi|254182916|ref|ZP_04889509.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] gi|126221994|gb|ABN85499.1| flagellar biosynthesis pathway, component FlhB [Burkholderia pseudomallei 668] gi|184213450|gb|EDU10493.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] Length = 379 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 17/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L +L +P + Sbjct: 1 MANQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KMLVLLAPSWLAEFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------RLVIPGLLLFMMFGIGSYLIQ 113 L +L +L D++ L S++ +++ P ++ + +GS L Sbjct: 59 ALFLL-------ELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPG 111 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 +L+ +KP F R++ + R+ S + F S +K + + ++ Sbjct: 112 GW-ILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAF 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L L F + + + + D+ + + +M+KQE+KDE Sbjct: 171 LRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G P +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++A Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 291 KGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|134280655|ref|ZP_01767365.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305] gi|167725903|ref|ZP_02409139.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei DM98] gi|254299711|ref|ZP_04967160.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] gi|134247677|gb|EBA47761.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305] gi|157809492|gb|EDO86662.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] Length = 379 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 17/360 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L +L +P + Sbjct: 1 MANQDSGD-KSEKATPQKLRNARRQGQIARSRDLSTAIGVLVSL-KMLVLLAPSWLAEFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------RLVIPGLLLFMMFGIGSYLIQ 113 L +L +L D++ L S++ +++ P ++ + +GS L Sbjct: 59 ALFLL-------ELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPG 111 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 +L+ +KP F R++ + R+ S + F S +K + + ++ Sbjct: 112 GW-ILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAF 170 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L L F + + + + D+ + + +M+KQE+KDE Sbjct: 171 LRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G P +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++A Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIA 290 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KG + +A +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 291 KGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|323975952|gb|EGB71046.1| FlhB HrpN YscU SpaS family protein [Escherichia coli TW10509] Length = 233 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 115/204 (56%), Gaps = 8/204 (3%) Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVL 209 K ++V ++ ISL N+ L + A P + + + +V + +++ +F A ++ Sbjct: 4 KSVVVLVMLWISLRNNFAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LI 59 Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269 D+ + + LKM+KQE+K+E K G P +K R + + R ++ + +A ++I Sbjct: 60 DVPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVI 119 Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 TNPTHYA+AL+Y Q+ AP +VAKG + IA +R++A E+ + + E P LARS++ Sbjct: 120 TNPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQ 179 Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353 +N IP Y+A+A ++ + K Sbjct: 180 VNQQIPFQLYRAIAHVLTYVLQMK 203 >gi|167551609|ref|ZP_02345363.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168240935|ref|ZP_02665867.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194445677|ref|YP_002040673.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451297|ref|YP_002045425.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194404340|gb|ACF64562.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409601|gb|ACF69820.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205323578|gb|EDZ11417.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339685|gb|EDZ26449.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 352 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I +L+ S Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIES 55 Query: 69 AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120 T Q + S+ + L+H+ + + + +LLF+ G+ GS +Q V+ Sbjct: 56 ITFTLQLVNKPFSYALTQLSHVLIES----LASVLLFLGAGVIVATVGSVFLQVGVVIAS 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + ++ K+I+S++++V KS +K+I++ I Y+ F A Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167 Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P+ L V ++ + ++ F + +LD + Y++ LKMSK ++K E K Sbjct: 168 PYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|261884065|ref|ZP_06008104.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 99 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/89 (57%), Positives = 70/89 (78%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+IP+FE+ Sbjct: 1 MINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFED 60 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLI 346 LAR+L+KQV ++ I P FYKAVA+LI Sbjct: 61 VQLARALYKQVNVDQMIAPEFYKAVAELI 89 >gi|224584067|ref|YP_002637865.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468594|gb|ACN46424.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 352 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGGVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|16764772|ref|NP_460387.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161614161|ref|YP_001588126.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167995056|ref|ZP_02576146.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262232|ref|ZP_03162306.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|3024668|sp|P96069|SSAU_SALTY RecName: Full=Secretion system apparatus protein ssaU gi|1695196|emb|CAA68202.1| secretion system apparatus, SsaU [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419943|gb|AAL20346.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161363525|gb|ABX67293.1| hypothetical protein SPAB_01903 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197240487|gb|EDY23107.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205327191|gb|EDZ13955.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267993311|gb|ACY88196.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157957|emb|CBW17452.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912407|dbj|BAJ36381.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129694|gb|ADX17124.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988309|gb|AEF07292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 352 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + +++F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|238918897|ref|YP_002932411.1| secretion system apparatus protein SsaU [Edwardsiella ictaluri 93-146] gi|48256991|gb|AAT41686.1| type three secretion apparatus protein U [Edwardsiella ictaluri] gi|84663105|gb|ABC60087.1| EsaU [Edwardsiella ictaluri 93-146] gi|238868465|gb|ACR68176.1| EsaU [Edwardsiella ictaluri 93-146] Length = 351 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/349 (24%), Positives = 164/349 (46%), Gaps = 25/349 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSD-LHVLL 66 KTE P+ K++ DA EG +++ + +++ LA ++ + P +Y+ + L Sbjct: 3 EKTEQPTDKRLRDAREEGQ--VAKSQDIGATVQLAVILLWMVTEGPRMYAAIGGFIDATL 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL------ 120 A+ L+ ++ LLT + + L++ +FG+ LI + + L Sbjct: 61 ATVNLPLLDAMT----LLTGEAAT--------LMIRFVFGLAMLLIVTLILTGLVETGFL 108 Query: 121 ---NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + PS +R+S K++ S+ L K +KI+++G T + + + Sbjct: 109 FAPKAIMPSAERISPLSNAKQMVSLLKLFELGKMILKIVILGLTFTYFIRSYAESFAQLV 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 A+ + L+ + + ++LL A V+D Y +L MS+++IK E K S Sbjct: 169 RADAEAGLWVTSKMILWLWGILLLLTALFAVVDYSMQYRHLRKQLMMSREDIKQEFKNSE 228 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK R++ + R + ++ + A++++ NPTH A+ LRY + E P +V G+ Sbjct: 229 GSPEIKQRRRELHREIQSGSLADSVASASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRG 288 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A+ + +A IP+ E LAR+L +P + AVAQL+ Sbjct: 289 ARAQHIVTLAEALRIPVVENIPLARALIATTRPGDYVPEELFAAVAQLL 337 >gi|62180013|ref|YP_216430.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127646|gb|AAX65349.1| Secretion system apparatus SsaU [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 352 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|254253714|ref|ZP_04947031.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124898359|gb|EAY70202.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 403 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 170/357 (47%), Gaps = 39/357 (10%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK++ EG +++ A + +A L ++ + G + + L ++ Sbjct: 54 DEKTEEPTHKKLDKVREEGQ--VAKSADVVE--VASLGSIVLVLTAGQHYLADTLRAIVK 109 Query: 68 SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 A R+L+D+ + L H+ + A L+ + ++ I + Q ++L Sbjct: 110 EAVDFTHGARELQDLWTV---LVHIGVQALGLLCGIAAVALVAAIVALAPQTGFKISLKA 166 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGT----------IITISLTENYF 171 V P VS G +RI+S+N+ ++ K K ILV ++ +L ++ Sbjct: 167 VMPKLASVSPGSGFQRIFSMNSAIDLAKMVGKAAILVAVMWQTIKSAMPVVASALDQSVP 226 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEI 229 ++ + S+L H V ++I F + +W K +MSK E+ Sbjct: 227 QLIGVL----WSVLMHVVAVALGVFVVIGAF---------DYKLQKWLFIRKNRMSKDEV 273 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K E K+S GNP +K +K +AR + +RA +++ NP HYA+ALRY E P Sbjct: 274 KREHKESEGNPELKGERKRMAREMSQEGPKGGVARANVVVVNPVHYAVALRYDPAEFPLP 333 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 V++AKG + A ++R+ A ++PI P +AR L K VP+N IP ++ VA ++ Sbjct: 334 VVLAKGLDEQALRLRQQAMHAHVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 389 >gi|205352862|ref|YP_002226663.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857072|ref|YP_002243723.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272643|emb|CAR37553.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708875|emb|CAR33205.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|309243390|gb|ADO51966.1| SsaU [Salmonella enterica subsp. enterica serovar Gallinarum] gi|322714480|gb|EFZ06051.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326627934|gb|EGE34277.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 352 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|167572950|ref|ZP_02365824.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis C6786] Length = 377 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 158/353 (44%), Gaps = 33/353 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----------FFSPGIYS 57 KTE P++KK+ DA +G S E + + L Y LF I Sbjct: 3 EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGAHLLQAFEALVDVSIAV 62 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V D A+AT R + + L +L + LVI + + + Q P+ Sbjct: 63 VNDDF----AAATARWTSALGAV---LIRFTLGMAVLVI-------AMTVAAAIAQIGPL 108 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L + +KPS +++ +K+++S+ +L F KS K+ ++ I L Y L F+ Sbjct: 109 LAVEALKPSLDKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIF-FYLIRQYAPSLQFL 167 Query: 178 SANPHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 P + ++L ++ F + D + + +L MS ++IK E Sbjct: 168 ---PLCSVECGLAVSTQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEF 224 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K S GNP IK++++ I R + +++T+++ NPTH A+ L Y + E P ++ Sbjct: 225 KNSEGNPEIKHKRREIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIE 284 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G++ +A + +A +P+ E LA +L ++ + IPP ++ VA L+ Sbjct: 285 IGRDKLALHIVALAERERVPVVENVPLAHALANRLDVGQRIPPDLFEPVAHLL 337 >gi|91791412|ref|YP_561063.1| type III secretion exporter [Shewanella denitrificans OS217] gi|91713414|gb|ABE53340.1| type III secretion exporter [Shewanella denitrificans OS217] Length = 352 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 180/355 (50%), Gaps = 22/355 (6%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDL 62 + ++K+E S K+ +A G S E + + +L L Y F + + SV S Sbjct: 2 SDEHKSEQASQYKLNEARKRGQLAKSMELNAWVLVLISLAYFYLFSESLAKELMSVISRY 61 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 +L S R ++ + + + + L++P + ++ I ++ V + Sbjct: 62 LQILGSVDIR-----NNFMLIAFDIFYPLAVLLVPFFSILVVASIVINVLLNGFVFSFEP 116 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISA 179 + P F++++ +G+K+I+S NL F+K +K+ LV G ++ + E I++ Sbjct: 117 LSPKFEKLNPVKGLKKIFSKKNLFEFIKQTIKLFLVALCGYLLFYGVVERLI-----IAS 171 Query: 180 NPH--SILYHAFF--TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 H S+L A T+R + +LL I L LD+ ++ + ++ MS +E+++E K+ Sbjct: 172 QSHVSSLLGMALSQETLR-LSFYLLLTIFPLIALDVLFTRWDFKKQMMMSHREVREEYKK 230 Query: 236 SYGNPIIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P IK+++K + + + + + A +II NPTH ++AL++ ++P++VA Sbjct: 231 KEGDPQIKSKRKEVQKELAKKLIALGKVKEADVIINNPTHISVALKFDPLTMNSPIVVAS 290 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 G ++ K +R+IA +H++ SLAR L+KQ+ I +P ++ +A + KI Sbjct: 291 GSGVLGKFIRRIAVKHSLLQVTNISLARRLYKQLAIGQPLPAEYFDELAPIYRKI 345 >gi|16760489|ref|NP_456106.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141751|ref|NP_805093.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413607|ref|YP_150682.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168233617|ref|ZP_02658675.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168263746|ref|ZP_02685719.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463168|ref|ZP_02697099.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822292|ref|ZP_02834292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470706|ref|ZP_03076690.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197250158|ref|YP_002146621.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362531|ref|YP_002142168.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213426013|ref|ZP_03358763.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213613054|ref|ZP_03370880.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647290|ref|ZP_03377343.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289827203|ref|ZP_06545926.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25322219|pir||AF0696 probable type III secretion protein ssaU [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502785|emb|CAD01943.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137379|gb|AAO68942.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127864|gb|AAV77370.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194457070|gb|EDX45909.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634165|gb|EDX52517.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094008|emb|CAR59504.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213861|gb|ACH51258.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332387|gb|EDZ19151.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341285|gb|EDZ28049.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347621|gb|EDZ34252.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320086100|emb|CBY95874.1| Secretion system apparatus protein ssaU [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 352 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|315301911|ref|ZP_07872923.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596] gi|313629719|gb|EFR97840.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596] Length = 162 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 91/151 (60%) Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255 + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ Sbjct: 1 FLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQ 60 Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315 + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R++A +P+ Sbjct: 61 GSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDEVPMI 120 Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 LARS++ + I YK V +++ Sbjct: 121 TNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 151 >gi|213581364|ref|ZP_03363190.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 338 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|213854181|ref|ZP_03382713.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 352 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 21/347 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLF----MMFGIGSYLIQRIPVLNLNHV 123 + L+ ++ + LT LS + + LL ++ +GS +Q V+ + Sbjct: 55 SITFTLQLVNKPFSYALTQLSHALIESLTSALLFLGAEVIVATVGSVFLQVGVVIASKAI 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 115 GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPYC 170 Query: 184 ILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G+ Sbjct: 171 GLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGD 230 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 231 PQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQ 290 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 291 ANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|203287732|ref|YP_002222747.1| flagellar biosynthesis protein [Borrelia recurrentis A1] gi|201084952|gb|ACH94526.1| flagellar biosynthesis protein [Borrelia recurrentis A1] Length = 373 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 176/351 (50%), Gaps = 16/351 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + +TE P+ ++ + A EG S E + SSI +++ +FFF ++ +L + Sbjct: 24 EGRTEVPTEQRKQKARREGQVLKSIEIN--SSISLFILFAVFFFMLSYFA--QELMDIFK 79 Query: 68 SATQRKLEDISHIVFLLTHLSLSA-SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + E +S ++ L+ + R V ++ + G ++Q V+ L + P Sbjct: 80 WQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPIMPK 139 Query: 127 FKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + R++ + +K + S++ N KS +KI ++ I I L N + IS P Sbjct: 140 WDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSN----IGKISKMPEY 195 Query: 184 ILYHAFFTVRKVLIMILLF----IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L + + I F + L+VLD + ++ LKM+K+EIK E K+ G+ Sbjct: 196 SLEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGD 255 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++++R + R + A +A ++ITNP H+A+A+++ AP ++AKGQ+ I Sbjct: 256 PLLRSRMRERMREISNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEI 315 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++IA E+N+ I E LAR L+ V IN IP +++ V++++ K+Y Sbjct: 316 VFVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366 >gi|171322350|ref|ZP_02911175.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] gi|171092322|gb|EDT37690.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] Length = 360 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/348 (25%), Positives = 170/348 (48%), Gaps = 20/348 (5%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE PS +K++ +G S++ + ++ A + L + G +T L + Sbjct: 3 EEKTEEPSERKLKKVREKGQIAKSKDVADAVTLAAAIGVL----TAGESMLTGGLSRTIR 58 Query: 68 SATQ-RKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 +A E H L+ SA+ ++P ++ ++ GI S Q ++ L V P Sbjct: 59 TALDFVNGERTPQATLSALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITLEPVMP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSI 184 F ++ GIK+I+S+ +L+ +K VK +++ +I + + + A P Sbjct: 119 KFDAINPMAGIKKIFSMKSLLELVKMIVKAVVLACVIWKMMMSLFPLVVASVYEATPQ-- 176 Query: 185 LYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L +TV K+L ++ L + D + + +M+K+E K E K+S G+P K Sbjct: 177 LSRVLWTVLMKLLGVVALVVTVFAAADYKIARMMFMRDNRMTKEEAKRENKESEGDPHTK 236 Query: 244 NRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 ++ +AR + R K+ +A +++ NPTHYA+A+RY E+ P ++ K + Sbjct: 237 GERRRLAREIATSAPARQKV----GQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDD 292 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +R+ A+ +PI P +AR+L++ V ++AIP ++ VA ++ Sbjct: 293 GALALRRHAHALGVPIVGNPPVARALYR-VERDAAIPEELFETVAAIL 339 >gi|284006885|emb|CBA72154.1| type III secretion component protein SctU [Arsenophonus nasoniae] Length = 349 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 104/353 (29%), Positives = 185/353 (52%), Gaps = 31/353 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL---------FFFSP--GIYS 57 KTE P++KKI+DA +G S+E + +C+I +L FF +++ Sbjct: 4 EKTETPTAKKIKDARKKGQILKSKEI-----VSSCIIVILLSLLLSLSSFFIEHFLSLFA 58 Query: 58 VTSDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 D +L +A R + I HI + + + L+I + S+L Q Sbjct: 59 YLQDSSLLDFQTAKARIVPHIWHITINILLPIIIITILII----------VLSHLAQFGF 108 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYFTML 174 +L+ + +KP K ++ G K+I+S+ L+ F KS +K+I +G I+ I N+F L Sbjct: 109 LLSPSSLKPDIKHINPIAGAKKIFSLKILLEFFKSLLKVIFIGFIVWFVIKGNINFFFHL 168 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 I T ++ I+ +L + +++LD YH + +LKMSK+EIK E K Sbjct: 169 PKCGLKCIPIFIGQLLT--QLTIICILGLIIISILDYCLEYHFYIKQLKMSKEEIKKEYK 226 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 + GNP IK R+K + + + + + + ++++IITNPTH A+ +RYI+ E P++ K Sbjct: 227 EMDGNPEIKGRRKQLHKELLVNNIRKQVKQSSVIITNPTHIAIGIRYIKHETPLPIVTLK 286 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + +A+ +++IA + NIPI + LARSL+ + I+ IP + +A++++ Sbjct: 287 QTDALAQLVKRIAIQENIPIIQRIPLARSLYAEGIIDQYIPENTIETMAEVLH 339 >gi|161503484|ref|YP_001570596.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864831|gb|ABX21454.1| hypothetical protein SARI_01560 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 351 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/347 (25%), Positives = 160/347 (46%), Gaps = 21/347 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y F I + ++ L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALFLYFHFLTEKVILRIIELINFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNHV 123 + + LT LS S + ++LF+ GI S +Q V+ + Sbjct: 63 INK-------PFSYALTQLSYSLVD-SLSSVILFLGAGIIISTVASVFLQVGVVIASKAI 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 ++ K+I+S++++V KS +K+I++ I+ Y+ + F A P+ Sbjct: 115 GFKSDHINPVSNFKQIFSLHSVVELCKSTLKVIILSLILAFFF---YYYVSTF-RALPYC 170 Query: 184 ILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L A F ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+ Sbjct: 171 GLACALPVVFCLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGD 230 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R++ + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + Sbjct: 231 PQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQ 290 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IA + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 291 ANYIVNIAERNCIPVVENVDLARSLFFEVERGDKIPETLFEPVAALL 337 >gi|125657194|gb|ABN48682.1| FlhB [Burkholderia pseudomallei] Length = 335 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 80/131 (61%) Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 +M+KQE+KDE K + G P +++R + + R + + + A +++ NPTHYA+AL+Y Sbjct: 176 RMTKQEVKDEHKNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYD 235 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 +AP ++AKG + +A +R+IA EH + + P LAR+++ +N IP Y+AV Sbjct: 236 TNRAEAPFVIAKGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAV 295 Query: 343 AQLIYKIYHKK 353 AQ++ + K Sbjct: 296 AQVLTYVLQLK 306 >gi|300693811|ref|YP_003749784.1| hypersensitivity response secretion protein hrcu, type III secretion exporter [Ralstonia solanacearum PSI07] gi|299075848|emb|CBJ35157.1| Hypersensitivity response secretion protein hrcU, Type III secretion exporter [Ralstonia solanacearum PSI07] Length = 357 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 162/352 (46%), Gaps = 28/352 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+EDA +G ++ A L ++ + LL + + + LA Sbjct: 3 DEKTEQPTDKKLEDAHKDGET--AKSADLTAAAVLLSGCLLLALTASFFGERWRALLDLA 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + ++H +L + +P +F + + Q VL+ V+ Sbjct: 61 LDVDSSRHPVMTLKQTISHFALQLVLMTLPVGFVFALIAWIATWAQTGIVLSFKPVELKM 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175 ++ G+KRI+S+ ++++ +K +K +IL+ I+ + Y ++LD Sbjct: 121 SAINPASGLKRIFSLRSMIDLVKMVIKAAAVAAAIWKLILILMPAIVGAA----YQSVLD 176 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 VR + LF+ L D G + +MSK E+K E K Sbjct: 177 IAEIG-------MTLLVRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228 Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK +K +AR K ++ + A ++ NPTHYA+A+RY+ E P ++AK Sbjct: 229 SEGDPHIKGERKKLARELAEDAKPKQSVAGAQAVVVNPTHYAVAIRYVPEEYGLPRIIAK 288 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 G + A +R+ A IPI P LAR+L++ V + +P ++ VA+++ Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGPVPEPLFETVAEVL 339 >gi|330444474|ref|YP_004377460.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum E58] gi|328807584|gb|AEB41757.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum E58] Length = 359 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 18/346 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL--LFFFSPGIYSVTSDLHVLL 66 KTE + K++ DA +G S++ F S + ++ + F+ S Y L+ Sbjct: 3 EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMSMAFYLSSFFYQHLGGF--LV 57 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI---PVLNLNHV 123 ++ TQ + + L +L + ++ L L + GI ++ + PV + Sbjct: 58 STLTQAPINHDPRLA--LYYLKNCLTLILAASLPLLVSVGIIGLIVGFLIVGPVFSTEVF 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP-- 181 KP K+ + E IK+ + + L+ +KS KI I+ + L +++ P Sbjct: 116 KPDIKKFNPIENIKQKFKVKTLIELLKSVFKIFGAALILYVVLKNRVPLIIETAGVAPIV 175 Query: 182 -HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I F+ K + I +F + VLD+ + H + +LKM K E+K E K + GNP Sbjct: 176 TAQIFKQIFY---KAVTSIGIFFVVVAVLDLVYQRHNFSKELKMEKFEVKQEFKDTEGNP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL A Sbjct: 233 EIKGRRRQIAQEIAYEDPSSQIKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K++ A ++ IPI LA L+ + IP Y+A+ +++ Sbjct: 293 KRILAEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338 >gi|327478779|gb|AEA82089.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166] Length = 380 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 173/361 (47%), Gaps = 18/361 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57 MSE ++ KTE S +K++ + ++G S++ + S+LA L+ L F G+ Sbjct: 1 MSEQNSSQEKTEEASEQKLKKSRDDGQVTRSKDVATTVSLLATLLLLKLSAELFLDGMQQ 60 Query: 58 VTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 S ++ ++ ++D+ I+ LL +S+ L+ P L++ G + Sbjct: 61 SFSYSYINFQQ-SEIGIDDLQVILTHNLLVFISVLLPLLLTPILVIAFALVPGGW----- 114 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + P F +++ G+ R+ N KS +KI ++ I+ + Y+ Sbjct: 115 -VFASKNFAPKFSKLNPITGLGRMVGAQNWSELAKSLLKI---SALLGIAAWQLYYAAPR 170 Query: 176 FISANPHSI---LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 ++ I + AF + I +LL + +DI + K++M+KQE K+E Sbjct: 171 LVALQRTDIFNAIGGAFSLTFDLAISLLLVFVLFSFIDIPLQRFFFLKKMRMTKQERKEE 230 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K G P +K R K + R+ + ++ + A ++I NPTHYA+ALRY + + P ++ Sbjct: 231 HKNQEGRPEVKARIKQLQRALAQRQIAKVIKDADVVIVNPTHYAVALRYDPKKAETPFVI 290 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A+G + +A +RK+A + + E P LAR+++ +N IP Y AVA ++ I Sbjct: 291 ARGVDEMALYIRKMAQANGREVVELPPLARAIYYSTQVNQQIPAPLYTAVAHVLTYILQL 350 Query: 353 K 353 K Sbjct: 351 K 351 >gi|238757869|ref|ZP_04619051.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC 35236] gi|238703854|gb|EEP96389.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC 35236] Length = 304 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 134/279 (48%), Gaps = 19/279 (6%) Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRV 130 S+ V ++T SA G L+F +FG I S L Q ++ + +R+ Sbjct: 21 SYAVGVMTRALFSA------GGLMFALFGGMLAAATIASVLAQVGFMVASKALGFKAERI 74 Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY---FTMLDFISANPHSILYH 187 S +K+I+S+ +L+ +KS +K+IL+ +I + L Y F L + ++ Sbjct: 75 SPVSNLKQIFSLRSLIELIKSCLKVILL-CLIFVYLFRYYAPTFQALPYCDPACAIPVFS 133 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 F VR + +L F L V D + H + +MSK+++K E K G+P K R++ Sbjct: 134 TF--VRWMWYALLTFYVVLGVFDYAFQSHNTLKQQRMSKEDVKQEHKDMEGDPQTKKRRR 191 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R + + ++ +++ NPTH A+ L Y E P ++ KG + A+ + +A Sbjct: 192 ELQREMQSGSLAQNVRQSAVVVRNPTHIAVCLGYDPVEMPVPTILEKGTDARAEHIVSLA 251 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +IP+ E +LAR LF V IP ++ VA L+ Sbjct: 252 LRESIPVVENIALARQLFHDVKCGEMIPESQFEPVAALL 290 >gi|115379113|ref|ZP_01466237.1| translocation protein in type III secretion [Stigmatella aurantiaca DW4/3-1] gi|115363896|gb|EAU63007.1| translocation protein in type III secretion [Stigmatella aurantiaca DW4/3-1] Length = 265 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 1/229 (0%) Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 LN+ HV P+ +R+S G KR+ S+ V +K+ + ++ ++ + E L + Sbjct: 28 LNMEHVAPNLERISPFAGWKRLLSVRAGVEGLKALLVSAVLAVLVWGEVREAGPEALRGV 87 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 L H + +L+ + + L D + + + L MS++E+K E ++S Sbjct: 88 EGRGAEGLVHLLDRLEPLLLRLSGCLLLLGGADYALARARHFKDLCMSREEVKREYQESE 147 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P K ++K++ R + +A+ ++ NPTH A+ALRY E +AP LVAK Q Sbjct: 148 GDPRHKAQRKALHRQLAQGGSARGVRKASAVVINPTHIAVALRYDAQECEAPYLVAKAQE 207 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A +R A IP+ + LARSL + IP Y+A A ++ Sbjct: 208 AEALALRHEAQRRGIPVVRDVPLARSLIS-YDVGEQIPEELYQAAAAVL 255 >gi|108809999|ref|YP_653915.1| secretion system apparatus protein SsaU [Yersinia pestis Antiqua] gi|108813554|ref|YP_649321.1| secretion system apparatus protein SsaU [Yersinia pestis Nepal516] gi|145600944|ref|YP_001165020.1| secretion system apparatus protein SsaU [Yersinia pestis Pestoides F] gi|150260678|ref|ZP_01917406.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|162421928|ref|YP_001608225.1| secretion system apparatus protein SsaU [Yersinia pestis Angola] gi|165926775|ref|ZP_02222607.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936397|ref|ZP_02224965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. IP275] gi|166010522|ref|ZP_02231420.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213930|ref|ZP_02239965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402227|ref|ZP_02307700.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167426123|ref|ZP_02317876.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467562|ref|ZP_02332266.1| type III secretion protein, YscU/HrpY family [Yersinia pestis FV-1] gi|218927480|ref|YP_002345355.1| secretion system apparatus protein SsaU [Yersinia pestis CO92] gi|229836528|ref|ZP_04456694.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|229840136|ref|ZP_04460295.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842217|ref|ZP_04462372.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904044|ref|ZP_04519157.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|270488971|ref|ZP_06206045.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27] gi|294502345|ref|YP_003566407.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] gi|108777202|gb|ABG19721.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|108781912|gb|ABG15970.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|115346091|emb|CAL18959.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|145212640|gb|ABP42047.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|149290086|gb|EDM40163.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|162354743|gb|ABX88691.1| type III secretion protein, YscU/HrpY family [Yersinia pestis Angola] gi|165915513|gb|EDR34122.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. IP275] gi|165921398|gb|EDR38622.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990612|gb|EDR42913.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204905|gb|EDR49385.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. B42003004] gi|167048408|gb|EDR59816.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054834|gb|EDR64636.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679814|gb|EEO75917.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|229690527|gb|EEO82581.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696502|gb|EEO86549.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706212|gb|EEO92220.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|262364375|gb|ACY60932.1| putative type III secretion apparatus protein [Yersinia pestis D182038] gi|270337475|gb|EFA48252.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27] gi|294352804|gb|ADE63145.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] Length = 355 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125 + I+ L L+L+ +R+ + + M + +G LI + + V P Sbjct: 60 S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 109 Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 SFK R++ + K+++S+ ++ MKS +K+ ++ T+I L Y ++ Sbjct: 110 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + F T+ L+ L+ +++D + + +LKMS E+K E K S Sbjct: 169 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDS 228 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +++ + R+T ++ NPTH+A+ L Y E P+++ KG Sbjct: 229 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 288 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 289 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338 >gi|269303197|gb|ACZ33297.1| putative Yop translocation protein U [Chlamydophila pneumoniae LPCoLN] Length = 360 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 161/347 (46%), Gaps = 20/347 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65 KTE + K++ DA +G S++ F S + ++ + FS + + L + Sbjct: 3 EKTEKATPKRLRDARKKGQVAKSQD---FPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSM 59 Query: 66 LASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 L+ A R D +F L + L L+AS +P L + G+ + P + Sbjct: 60 LSQAPTR--HDPVITLFYLKNCLMLILTAS---LPLLGAVAVVGVIVGFLIVGPTFSTEV 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP- 181 KP K+ + E IK+ + I L+ +KS +KI I+ I+L +++ +P Sbjct: 115 FKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPI 174 Query: 182 --HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 I F+ K + I +F + VLD+ + H + +LKM K E+K E K + GN Sbjct: 175 ITAQIFKEIFY---KAVTSIGIFFLIVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGN 231 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL Sbjct: 232 PEIKGRRRQIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLR 291 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AK++ A ++ IPI LA L + IP Y+A+ +++ Sbjct: 292 AKRILDEAEKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEIL 338 >gi|22124447|ref|NP_667870.1| secretion system apparatus protein SsaU [Yersinia pestis KIM 10] gi|45440283|ref|NP_991822.1| secretion system apparatus protein SsaU [Yersinia pestis biovar Microtus str. 91001] gi|167418837|ref|ZP_02310590.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|21957234|gb|AAM84121.1|AE013654_10 putative type III secretion system component [Yersinia pestis KIM 10] gi|45435139|gb|AAS60699.1| putative type III secretion system component [Yersinia pestis biovar Microtus str. 91001] gi|166962831|gb|EDR58852.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 356 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 5 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125 + I+ L L+L+ +R+ + + M + +G LI + + V P Sbjct: 61 S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 110 Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 SFK R++ + K+++S+ ++ MKS +K+ ++ T+I L Y ++ Sbjct: 111 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 169 Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + F T+ L+ L+ +++D + + +LKMS E+K E K S Sbjct: 170 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDS 229 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +++ + R+T ++ NPTH+A+ L Y E P+++ KG Sbjct: 230 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 289 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 290 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339 >gi|153846242|ref|ZP_01993844.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|149744950|gb|EDM56290.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] Length = 150 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 76/118 (64%) Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K++ G P +K R + + R + +MM +A +I+TNP HY++ALRY Q + A Sbjct: 1 VKDEYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRA 60 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 PV++AKG + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ Sbjct: 61 PVVIAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVL 118 >gi|330505669|ref|YP_004382538.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] gi|328919955|gb|AEB60786.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] Length = 377 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 98/362 (27%), Positives = 182/362 (50%), Gaps = 20/362 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---- 56 MSE + KTE S+ K++ + ++G S++ S S++A L L F S G++ Sbjct: 1 MSEQSSGQEKTEEASAHKLKKSKDDGQVARSKDLSTTISLIATLFILKF--SAGLFLEGL 58 Query: 57 SVTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 + + L + ++ L+D+ ++ +L + L A L+ L++ + G + Sbjct: 59 NDSFRLSYIQFGHSEIGLDDLDTLLGYNMLVFIKLLAPLLLTSLLVVVLSLVPGGW---- 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V + + P F +++ G+ RI+S N +KS +K++++ + + + + Sbjct: 115 --VFSAKNFAPKFSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRA---ALP 169 Query: 175 DFISANPHSILYH---AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 D I+ S+L AF + + ++L + +DI + + KL+M+KQE K+ Sbjct: 170 DLIALQRSSVLEAVSAAFDLTFNLTLCLMLIFVVFSFIDIPLQRYFFLKKLRMTKQERKE 229 Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 E K G P +K R K + R ++ ++ A ++I NPTHYA+AL+Y + AP + Sbjct: 230 EHKNQEGRPEVKARIKQLQRQMLQRQISRVIKNADVVIVNPTHYAVALKYDTQKAAAPFV 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +AKG + A MR++A +H++ + E P LAR+++ IN IP Y AVA ++ I Sbjct: 290 LAKGVDETALYMRQMAAKHSLEVVEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQ 349 Query: 352 KK 353 K Sbjct: 350 LK 351 >gi|17549085|ref|NP_522425.1| type III secretion system protein HrcU [Ralstonia solanacearum GMI1000] gi|547676|sp|P35652|HRCU_RALSO RecName: Full=Hypersensitivity response secretion protein hrcU gi|6066705|emb|CAB58251.1| HrpN protein [Ralstonia solanacearum] gi|17431336|emb|CAD18015.1| hrp conserved hrcu transmembrane protein [Ralstonia solanacearum GMI1000] gi|1097284|prf||2113360K hrpN gene Length = 357 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 161/344 (46%), Gaps = 12/344 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+EDA +G ++ A L ++ + LL + ++ + LA Sbjct: 3 DEKTEQPTDKKLEDAHRDGET--AKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLA 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + ++H +L + +P +F + + Q VL+ V+ Sbjct: 61 LDVDSSRHPLMTLKQTISHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELKM 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ G+KRI+S+ ++++ +K +K + V + + M + A S++ Sbjct: 121 SAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLI---LILMPSIVGAAYQSVMDI 177 Query: 188 A----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 A VR + LF+ L D G + +MSK E+K E K S G+P IK Sbjct: 178 AEIGMTLLVRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236 Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A Sbjct: 237 GERKKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALA 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R+ A IPI P LARSL++ V + +P ++ VA+++ Sbjct: 297 LREEAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVL 339 >gi|51594685|ref|YP_068876.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis IP 32953] gi|186893688|ref|YP_001870800.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis PB1/+] gi|51587967|emb|CAH19570.1| putative type III secretion apparatus protein EscU/SsaU/YscU [Yersinia pseudotuberculosis IP 32953] gi|186696714|gb|ACC87343.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis PB1/+] Length = 355 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125 + I+ L L+L+ +R+ + + M + +G LI + + V P Sbjct: 60 S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 109 Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 SFK R++ + K+++S+ ++ MKS +K+ ++ T+I L Y ++ Sbjct: 110 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + F T+ L+ L+ +++D + + +LKMS E+K E K S Sbjct: 169 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDS 228 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +++ + R+T ++ NPTH+A+ L Y E P+++ KG Sbjct: 229 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 288 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 289 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338 >gi|15618242|ref|NP_224527.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15835857|ref|NP_300381.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752716|ref|NP_444983.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33241667|ref|NP_876608.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4376600|gb|AAD18471.1| Yop proteins translocation protein U [Chlamydophila pneumoniae CWL029] gi|6672052|dbj|BAA88663.1| Yop translocation protein U [Chlamydophila pneumoniae] gi|7189359|gb|AAF38277.1| type III secretion inner membrane protein SctU [Chlamydophila pneumoniae AR39] gi|8978696|dbj|BAA98532.1| Yop translocation protein U [Chlamydophila pneumoniae J138] gi|33236176|gb|AAP98265.1| YopU [Chlamydophila pneumoniae TW-183] Length = 360 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 161/347 (46%), Gaps = 20/347 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65 KTE + K++ DA +G S++ F S + ++ + FS + + L + Sbjct: 3 EKTEKATPKRLRDARKKGQVAKSQD---FPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSM 59 Query: 66 LASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 L+ A R D +F L + L L+AS +P L + G+ + P + Sbjct: 60 LSQAPTR--HDPVITLFYLKNCLMLILTAS---LPLLGAVAVVGVIVGFLIVGPTFSTEV 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP- 181 KP K+ + E IK+ + I L+ +KS +KI I+ I+L +++ +P Sbjct: 115 FKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPI 174 Query: 182 --HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 I F+ K + I +F + +LD+ + H + +LKM K E+K E K + GN Sbjct: 175 ITAQIFKEIFY---KAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGN 231 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL Sbjct: 232 PEIKGRRRQIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLR 291 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AK++ A ++ IPI LA L + IP Y+A+ +++ Sbjct: 292 AKRILDEAEKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEIL 338 >gi|299069231|emb|CBJ40491.1| Hypersensitivity response secretion protein hrcU, Type III secretion exporter [Ralstonia solanacearum CMR15] Length = 354 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 164/345 (47%), Gaps = 14/345 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+EDA +G ++ A L ++ + LL + ++ + +A Sbjct: 3 DEKTEQPTDKKLEDAHRDGET--AKSADLTAAAVLLSGCLLLALTASVFGERWRALLDIA 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + H +L + +P +F + + Q VL+ V+ Sbjct: 61 LDVDSSRHPVMTLKQTIGHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELKM 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ G+KRI+S+ ++++ +K +K + V + + M + A S++ Sbjct: 121 NAINPASGLKRIFSVRSMIDLIKMIIKGVAVAAAVWKLI---LILMPAIVGAAYQSVMDI 177 Query: 188 AFFTVRKVLIMIL-----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 A + +L+ +L LF+ L +D G + +MSK E+K E K S G+P I Sbjct: 178 AEIGI-TLLVRLLAAGGGLFL-ILGAVDFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHI 235 Query: 243 KNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 K +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A Sbjct: 236 KGERKKLARELAEEAKPKQSVAGAQALVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEAL 295 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R+ A IPI P LARSL++ V + +P ++ VA+++ Sbjct: 296 ALREEAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVL 339 >gi|312171082|emb|CBX79341.1| Type III secretion protein HrcU [Erwinia amylovora ATCC BAA-2158] Length = 360 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 27/357 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62 Query: 69 ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 Q L ++ S I+ + T L+ + I LL IG + IQ P+ + Sbjct: 63 IGQPFELALSEVVSSAIILVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P F R++ K+++S+ L + S VK + + TI + LT + L+ +S + Sbjct: 115 QPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPD----LESLSRLAYG 170 Query: 184 ILYHAFFTVRKVLIMI----LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L + V +LI + LL + LT+LD G + + + +MS Q+I+DE KQS G+ Sbjct: 171 DLDSFWPAVETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGD 230 Query: 240 PIIKNRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKG 295 P +K + ++A + S+ A +++ NPTHYA+AL Y P ++ KG Sbjct: 231 PHMKGHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKG 290 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ AK++ A + NIP+ LAR+L++ IP +AVAQ +Y++ + Sbjct: 291 EDQQAKELIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345 >gi|270487694|ref|ZP_06204768.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM D27] gi|270336198|gb|EFA46975.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM D27] Length = 161 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 81/125 (64%) Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 +KM+KQE+K E K + GNP IK+R + + R ++ + A +IITNPTH+++AL+Y Sbjct: 1 MKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKY 60 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 + AP +VAKG++ IA +R IA +H I I E P LAR+++ +N IP Y+A Sbjct: 61 APEKASAPYIVAKGKDDIALYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRA 120 Query: 342 VAQLI 346 +AQ++ Sbjct: 121 IAQVL 125 >gi|292487013|ref|YP_003529883.1| type III secretion protein HrcU [Erwinia amylovora CFBP1430] gi|292900602|ref|YP_003539971.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1181176|gb|AAB06008.1| HrcU [Erwinia amylovora] gi|291200450|emb|CBJ47579.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552430|emb|CBA19475.1| Type III secretion protein HrcU [Erwinia amylovora CFBP1430] Length = 360 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 27/357 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62 Query: 69 ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 Q L ++ S I+ + T L+ + I LL IG + IQ P+ + Sbjct: 63 IGQPFELALSEVVSSAIILVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P F R++ K+++S+ L + S VK + + TI + LT + L+ +S + Sbjct: 115 QPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPD----LESLSRLAYG 170 Query: 184 ILYHAFFTVRKVLIMI----LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L + V +LI + LL + LT+LD G + + + +MS Q+I+DE KQS G+ Sbjct: 171 DLDSFWPAVETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGD 230 Query: 240 PIIKNRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKG 295 P +K + ++A + S+ A +++ NPTHYA+AL Y P ++ KG Sbjct: 231 PHMKGHRHALAHELLNQPATAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKG 290 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ AK++ A + NIP+ LAR+L++ IP +AVAQ +Y++ + Sbjct: 291 EDQQAKELIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345 >gi|153948750|ref|YP_001402765.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis IP 31758] gi|152960245|gb|ABS47706.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis IP 31758] Length = 356 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 5 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125 + I+ L L+L+ +R+ + + M + +G LI + + V P Sbjct: 61 S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 110 Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 SFK R++ + K+++S+ ++ MKS +K+ ++ T+I L Y ++ Sbjct: 111 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 169 Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + F T+ L+ L+ +++D + + +LKMS E+K E K S Sbjct: 170 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDS 229 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +++ + R+T ++ NPTH+A+ L Y E P+++ KG Sbjct: 230 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGH 289 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 290 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339 >gi|269138239|ref|YP_003294939.1| type III secretion apparatus protein [Edwardsiella tarda EIB202] gi|61743012|gb|AAX55232.1| EsaU [Edwardsiella tarda] gi|267983899|gb|ACY83728.1| type III secretion apparatus protein [Edwardsiella tarda EIB202] gi|304558282|gb|ADM40946.1| EsaU [Edwardsiella tarda FL6-60] Length = 352 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/341 (25%), Positives = 154/341 (45%), Gaps = 9/341 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++K++ DA EG S++ S + LA ++ + P +Y+ + Sbjct: 3 EKTEQPTAKRLRDAREEGQVAKSQDISA-TVQLAVILLWMVTEGPTLYAAIGGFIDATLA 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L D I L + R V L + I + L++ + + PS + Sbjct: 62 TLNLPLPD--AIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K++ S+ L K +KI+++G T + + + A+ + L+ Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLW-- 177 Query: 189 FFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 T + L M +LL A V+D Y +L MS ++IK E K + G+P IK R Sbjct: 178 -VTSKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + R + ++ S A++++ NPTH A+ LRY + E P +V G+ A+ + Sbjct: 237 RRELHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVA 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A IP+ E LAR+L +P + AVAQL+ Sbjct: 297 LAEARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337 >gi|310766415|gb|ADP11365.1| HrcU [Erwinia sp. Ejp617] Length = 365 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 27/357 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 8 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 67 Query: 69 ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 Q L ++ S +V + T L+ + I LL IG + IQ P+ + Sbjct: 68 IGQPFELALSEVVSSALVLVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 119 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP F R++ K+++S+ L + S VK + + TI + LT + L+ ++ + Sbjct: 120 KPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPD----LESLARLAYG 175 Query: 184 ILYHAFFTVRKVLIMI----LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L + V +LI + LL + LT+LD G + + + +MS Q+I+DE KQS G+ Sbjct: 176 DLDSFWPAVETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGD 235 Query: 240 PIIKNRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKG 295 P +K + ++A + + S+ A +++ NPTHYA+AL Y P ++ KG Sbjct: 236 PHMKGHRHALAHELLNQPVAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKG 295 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ AK + A + NIP+ LAR+L++ IP +AVAQ +Y++ + Sbjct: 296 EDGEAKALIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 350 >gi|170026112|ref|YP_001722617.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis YPIII] gi|169752646|gb|ACA70164.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis YPIII] Length = 355 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125 + I+ L L+L+ +R+ + + M + +G LI + + V P Sbjct: 60 S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 109 Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 SFK R++ + K+++S+ ++ MKS +K+ ++ T+I L Y ++ Sbjct: 110 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLIQYAPSFGYL 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + F T+ L+ L+ +++D + + +LKMS E+K E K S Sbjct: 169 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDS 228 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +++ + R+T ++ NPTH+A+ L Y E P+++ KG Sbjct: 229 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 288 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 289 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338 >gi|55981991|gb|AAV69421.1| EsaU [Edwardsiella tarda] Length = 352 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 9/341 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++K++ DA EG S++ S + LA ++ + P +Y+ + Sbjct: 3 EKTEQPTAKRLRDAREEGQVAKSQDISA-TVQLAVILLWMVTEGPTLYAAIGGFIDATLA 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L D I L + R V L + I + L++ + + PS + Sbjct: 62 TLNLPLPD--AIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K++ S+ L K +KI+++G T + + + A+ + L+ Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGPTFTYFIRGYAASFAQLVRADAEAGLW-- 177 Query: 189 FFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 T + L M +LL A ++D Y +L MS ++IK E K + G+P IK R Sbjct: 178 -VTSKMALWMWGILLLLTALFAIVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + R + ++ S A++++ NPTH A+ LRY + E P +V G+ A+ + Sbjct: 237 RRELHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVA 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A IP+ E LAR+L +P + AVAQL+ Sbjct: 297 LAEARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337 >gi|332159965|ref|YP_004296542.1| type III secretion protein, YscU/HrpY family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607483|emb|CBY28981.1| type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] gi|325664195|gb|ADZ40839.1| Type III secretion protein, YscU/HrpY family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862410|emb|CBX72569.1| secretion system apparatus protein ssaU [Yersinia enterocolitica W22703] Length = 358 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 164/344 (47%), Gaps = 23/344 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P++K++ +A +G S E +S + ++ + +FF G ++ + L+ S Sbjct: 7 EKNEKPTAKRLREAREKGQVIKSVE---ITSGMQLVVLVAYFFLVG-NTIIDQIGALIRS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF- 127 + + + F L + + +L+ ++ +G LI + + V P F Sbjct: 63 TINQLQQPFT---FALARIGSECT-----AVLIHIVGILGGALILMTIIAGIAQVGPLFA 114 Query: 128 -KRVSLR-------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 K V+ + + K+++S+ +L +KS +K+ ++ T+I L Y T +++ Sbjct: 115 TKAVAFKSEHINPIDNAKQLFSLRSLFELIKSLLKVGVL-TLIFGYLLAQYATSFGYLAY 173 Query: 180 NPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 S F T+ L+ L+ ++LD + ++ +LKMS +E+K E K S G Sbjct: 174 CGSSCAIPVFGTLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDG 233 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK +++ + + + R+T I+ NPTH+A+ L Y + P+++ KG+ Sbjct: 234 DPHIKQKRRQLQQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGE 293 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 A + K+A + IPI E +LAR+L + V IP ++ V Sbjct: 294 RAALIIKLAEQQGIPIVENIALARALHRDVVCGDTIPETLFEPV 337 >gi|46446384|ref|YP_007749.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400025|emb|CAF23474.1| putative type III secretion pathway protein sctU [Candidatus Protochlamydia amoebophila UWE25] Length = 357 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 135/255 (52%), Gaps = 7/255 (2%) Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 IP + L + G+ + PV K K+ + + +K + + LV +KS +KI Sbjct: 88 IPTMALVALVGVTITFLTVGPVFAPEVFKFDIKKFNPVDNLKAKFKLKTLVELLKSVIKI 147 Query: 156 ILVGTIITISLTENYFTMLDFISANPHS---ILYHAFFTVRKVLIMILLFIATLTVLDIG 212 + +I + + ++ +S P S I++HAF +V++ + LF + V D Sbjct: 148 SIASYLIYKVMYNSIPVLIQTVSM-PISGALIVFHAFLV--EVVLKVGLFFIVVAVADFI 204 Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITN 271 + + ++ M K E+K E K S G+P IK +++ IA+ + RA ++TN Sbjct: 205 YQKKTFAKEMMMEKFEVKQEYKNSEGDPHIKGKRRQIAQEIAYQEGPTGGVKRAQAVVTN 264 Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+A+ Y + + AP ++A G++++A+++ KIA +++IP+ +LA L++Q I Sbjct: 265 PTHLAIAIGYERHMDAAPYILAMGKDVLAERIVKIAEKNDIPVLRNITLAHILWEQGEIY 324 Query: 332 SAIPPVFYKAVAQLI 346 +P Y+A+A+++ Sbjct: 325 EYVPEDTYEALAEIM 339 >gi|307131233|ref|YP_003883249.1| type III secretion inner membrane protein [Dickeya dadantii 3937] gi|306528762|gb|ADM98692.1| type III secretion inner membrane protein [Dickeya dadantii 3937] Length = 359 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 168/354 (47%), Gaps = 21/354 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A L +L G+ S L L+ Sbjct: 3 EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGM----SKLQALMQL 58 Query: 69 ATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 R + H LSL + ++ + +M +G + IQ P+ + +K Sbjct: 59 PLSRITDPFGHAADEIFSEALSLLTTFCLLTISVALLMRLVGGW-IQYGPLFAVEALKID 117 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F R++ IK+++++ L + + + +K + +G + + + +++ + + Sbjct: 118 FNRLNPINQIKQMFTMRKLTDMLTNILKAVTIGLVFWLVVMPQLEWLVELAYGDLTTFWK 177 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ V L + L VLD G + + + +MS ++I++E K S G+P +K + Sbjct: 178 GVENVLKSVARTTLSALLALGVLDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHR 237 Query: 247 KSIARS--------RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 KS+A+ R++ K+ +A +++ NPTHYA+AL Y + P ++ KG++ Sbjct: 238 KSVAQEILNEPASPRVKPKVEDAD----LLLVNPTHYAVALFYRPGKTPLPRILLKGEDD 293 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AK + A++ +P+ LAR+L++ +P IP + VAQ +YK+ + Sbjct: 294 QAKALIARAHQAGVPVIRFIWLARTLYR-IPEGHYIPRDTLQPVAQ-VYKVLRQ 345 >gi|293416105|ref|ZP_06658745.1| type III secretion protein SctU [Escherichia coli B185] gi|291432294|gb|EFF05276.1| type III secretion protein SctU [Escherichia coli B185] Length = 370 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/317 (24%), Positives = 148/317 (46%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGFGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 CHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|301027459|ref|ZP_07190796.1| surface presentation of antigens protein SpaS [Escherichia coli MS 69-1] gi|300394967|gb|EFJ78505.1| surface presentation of antigens protein SpaS [Escherichia coli MS 69-1] Length = 370 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + T + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWTNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|116515090|ref|YP_802719.1| hypothetical protein BCc_150 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256944|gb|ABJ90626.1| type III protein export, membrane component [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 371 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 113/202 (55%) Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 ++ F SF KIILV + I + YF F S + S ++ + V + + ++L+ Sbjct: 143 IIEFFFSFFKIILVFFVSFIFVKTMYFKKKYFYSYSFFSNIFLGYKFVYRFISLLLMIFL 202 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264 + ++D Y + ++ LKM+ QEIKDE K+ GNPIIK R + + + +R + + Sbjct: 203 IIAIIDSSIKYFKHFNNLKMTIQEIKDEQKELDGNPIIKQRIRFLMKQTLRKSVFSQVIK 262 Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 + +II + ++A+A++Y N P++ AKG +A ++ KIA E+NIPIF S+A+ L Sbjct: 263 SNVIIYDSVNFAVAIQYNIHLNSTPIISAKGSGKVALRIIKIAEENNIPIFFSNSIAKYL 322 Query: 325 FKQVPINSAIPPVFYKAVAQLI 346 + I + I + ++A+++ Sbjct: 323 YNNFFIGNNISVNLHYSIAKIL 344 >gi|238899254|ref|YP_002924937.1| type III secretion system apparatus protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467015|gb|ACQ68789.1| type III secretion system apparatus protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 352 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 89/348 (25%), Positives = 162/348 (46%), Gaps = 23/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K+I+++ +G S E + + + LIY P + +L LL + Sbjct: 3 EKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYF-SLVGPNLV----NLMGLLIT 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLL---------LFMMFGIGSYLIQRIPVLN 119 ++ +KL+ I L +++ L I G+L L +M +G L + Sbjct: 58 SSIKKLDKPIGIAVLDLTSEIASVFLQIMGVLGGGLALATILVVMSQVGPLLAIKAIGFK 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 H+ P K + S+ +L KS K+ILV I L E Y ++S Sbjct: 118 GQHINPI-------SNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLRE-YAPTFGYLSY 169 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + F T+ + L+ LL + +LD + ++ K+KMS++EIK E K + G Sbjct: 170 CGTHCAFPIFGTLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDG 229 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++++ + + + +T +I NPTH+A+ L Y E P+++ KG+ Sbjct: 230 DPEIKSKRRELQQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGT 289 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A+ + K+A + ++P+ E LA+ L +V + IP ++ VA ++ Sbjct: 290 RAQTIIKLAEKFDVPVVENVRLAQMLHNEVNCDEIIPEHLFEPVAAIL 337 >gi|12083752|dbj|BAB20911.1| putative HrpN [Acidovorax avenae subsp. avenae] Length = 214 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 1/197 (0%) Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 F KS +K ++ G ++ +T ++ + P + A+ + K+ L + Sbjct: 1 EFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIAWSALLKLFSFAFLVFLVI 60 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 LD G + + +MSK ++K E K S G+P +K KS+ E AT Sbjct: 61 GPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKSLREEMATSPPQERVPGAT 120 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 +++TNPTHYA+ALRY P++VAKG + A +R +A H+IP+ P LAR+L K Sbjct: 121 VVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHK 180 Query: 327 QVPINSAIPPVFYKAVA 343 +P++ IP ++AV+ Sbjct: 181 -LPLDQPIPEELFEAVS 196 >gi|219566954|dbj|BAH04985.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 357 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 161/344 (46%), Gaps = 12/344 (3%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE P+ KK+EDA +G ++ A L ++ + LL + ++ + LA Sbjct: 3 DEKTEQPTDKKLEDAHRDGET--AKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLA 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ +L + +P +F + + Q VL+ V+ Sbjct: 61 LDVDSSRHPVMTLKQTISYFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELKM 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ G+KRI+S+ ++++ +K +K + V + + M + A S++ Sbjct: 121 SAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLI---LILMPSIVGAAYQSVMDI 177 Query: 188 A----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 A VR + LF+ L D G + +MSK E+K E K S G+P IK Sbjct: 178 AEIGMTLLVRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236 Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A Sbjct: 237 GERKKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALA 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R+ A IPI P LARSL++ V + +P ++ VA+++ Sbjct: 297 LREEAAALGIPIVGNPPLARSLYR-VDLYGPVPESLFETVAEVL 339 >gi|331654348|ref|ZP_08355348.1| surface presentation of antigens protein SpaS [Escherichia coli M718] gi|331047730|gb|EGI19807.1| surface presentation of antigens protein SpaS [Escherichia coli M718] Length = 370 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|323966652|gb|EGB62084.1| YscU/HrpY family protein type III secretion protein [Escherichia coli M863] gi|323978521|gb|EGB73603.1| YscU/HrpY family protein type III secretion protein [Escherichia coli TW10509] gi|327251613|gb|EGE63299.1| surface presentation of antigens protein spaS [Escherichia coli STEC_7v] Length = 370 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|227328488|ref|ZP_03832512.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 359 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 84/358 (23%), Positives = 168/358 (46%), Gaps = 28/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE P+ KK+EDA +G S++ + +L C++ L S L L Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55 Query: 66 LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + QR + + + H + L+ + ++ + ++ +G +L Q P+ + Sbjct: 56 VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWL-QYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 115 KLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + ++ L + L+VLD G + + + +MS +++++E K S G+P +K Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSVLDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234 Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294 +KS+A H++M A R A +++ NPTHYA+ L Y + P ++ K Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 G+N A+ + A + +IP+ L R+L++ P IP +AVAQ +Y++ + Sbjct: 290 GENQAARDLIAQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRVLRQ 346 >gi|300936205|ref|ZP_07151141.1| surface presentation of antigens protein SpaS [Escherichia coli MS 21-1] gi|300458662|gb|EFK22155.1| surface presentation of antigens protein SpaS [Escherichia coli MS 21-1] Length = 370 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + I+ I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|284922800|emb|CBG35888.1| type III secretion system protein [Escherichia coli 042] Length = 370 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPMPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|188532663|ref|YP_001906460.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|259909721|ref|YP_002650077.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcU protein [Erwinia pyrifoliae Ep1/96] gi|188027705|emb|CAO95558.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|224965343|emb|CAX56875.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcU protein [Erwinia pyrifoliae Ep1/96] gi|283479807|emb|CAY75723.1| Type III secretion protein HrcU [Erwinia pyrifoliae DSM 12163] Length = 360 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 19/353 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGLVETVLALDDVGMQKLQALMRLPLAR 62 Query: 69 ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 Q L ++ S +V + T L+ + I LL IG + IQ P+ + Sbjct: 63 IGQPFELALSEVVSSALVLVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP F R++ K+++S+ L + VK + TI + LT + ++ + S Sbjct: 115 KPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLARLAYGDLDS 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + +V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K Sbjct: 175 FWPAVEVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMK 234 Query: 244 NRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 + ++A + S+ A +++ NPTHYA+AL Y P ++ KG++ Sbjct: 235 GHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGE 294 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AK + A + NIP+ LAR+L++ IP +AVAQ +Y++ + Sbjct: 295 AKALIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345 >gi|330862333|emb|CBX72493.1| hypothetical protein YEW_GP28240 [Yersinia enterocolitica W22703] Length = 225 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 80/126 (63%) Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 K+KM+KQE+K E K + GNP IK R + + R ++ + A +IITNPTH+++AL+ Sbjct: 64 KMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALK 123 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y + AP ++AKG++ IA +R +A ++I I E P LAR+++ +N +P Y+ Sbjct: 124 YAPEKASAPYIIAKGKDDIALYIRTVAKNNDIEIVEFPPLARAIYHTTKVNQQVPAQLYR 183 Query: 341 AVAQLI 346 A AQ++ Sbjct: 184 ATAQVL 189 >gi|15803385|ref|NP_289418.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 EDL933] gi|15832975|ref|NP_311748.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. Sakai] gi|168747673|ref|ZP_02772695.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168753787|ref|ZP_02778794.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168759977|ref|ZP_02784984.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168766842|ref|ZP_02791849.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168775726|ref|ZP_02800733.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|168778863|ref|ZP_02803870.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|168799982|ref|ZP_02824989.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|195936469|ref|ZP_03081851.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. EC4024] gi|208806601|ref|ZP_03248938.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208813845|ref|ZP_03255174.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208818835|ref|ZP_03259155.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209399671|ref|YP_002272329.1| hypothetical protein ECH74115_4137 [Escherichia coli O157:H7 str. EC4115] gi|217327346|ref|ZP_03443429.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254794804|ref|YP_003079641.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. TW14359] gi|12517360|gb|AAG57977.1|AE005514_14 putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. EDL933] gi|13363193|dbj|BAB37144.1| type III secretion protein EprS [Escherichia coli O157:H7 str. Sakai] gi|187768810|gb|EDU32654.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188017892|gb|EDU56014.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189003231|gb|EDU72217.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189358704|gb|EDU77123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189363851|gb|EDU82270.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189369301|gb|EDU87717.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189377676|gb|EDU96092.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|208726402|gb|EDZ76003.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208735122|gb|EDZ83809.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208738958|gb|EDZ86640.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209161071|gb|ACI38504.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|217319713|gb|EEC28138.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254594204|gb|ACT73565.1| putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. TW14359] gi|320189195|gb|EFW63854.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. EC1212] gi|326339064|gb|EGD62879.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. 1044] gi|326343055|gb|EGD66823.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. 1125] Length = 373 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|167573406|ref|ZP_02366280.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 366 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 174/353 (49%), Gaps = 30/353 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE PS KK++ +G S++ + ++ A + G+ + + Sbjct: 3 EEKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAI---------GVLTAGESMLGGGL 53 Query: 68 SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S R D H + L L+ SA+ +++P + ++ G+ S Q ++ L Sbjct: 54 SRVMRTALDFVHGERTPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISA 179 V P F ++ GIKRI+S+ +L+ +K VK +++ ++ +T + + A Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173 Query: 180 NPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P L +TV K+L ++++ ++ L D + + + +M+K+E K E K+S G Sbjct: 174 TPQ--LSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEG 231 Query: 239 NPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 +P K ++ +AR + R K+ +A +++ NPTHYA+A+RY E+ P ++ Sbjct: 232 DPHTKGERRRLAREIATSAAPRQKV----GQANVLVVNPTHYAVAIRYAPDEHPLPRVIE 287 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K + A +R+ A+ +PI P +AR+L++ + ++AIP ++ VA ++ Sbjct: 288 KAVDDGALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAIL 339 >gi|167566304|ref|ZP_02359220.1| type III secretion system protein [Burkholderia oklahomensis EO147] Length = 372 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 174/353 (49%), Gaps = 30/353 (8%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE PS KK++ +G S++ + ++ A + G+ + + Sbjct: 3 EEKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAI---------GVLTAGESMLGGGL 53 Query: 68 SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S R D H + L L+ SA+ +++P + ++ G+ S Q ++ L Sbjct: 54 SRVMRTALDFVHGERTPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISA 179 V P F ++ GIKRI+S+ +L+ +K VK +++ ++ +T + + A Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173 Query: 180 NPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P L +TV K+L ++++ ++ L D + + + +M+K+E K E K+S G Sbjct: 174 TPQ--LSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEG 231 Query: 239 NPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 +P K ++ +AR + R K+ +A +++ NPTHYA+A+RY E+ P ++ Sbjct: 232 DPHTKGERRRLAREIATSAAPRQKV----GQANVLVVNPTHYAVAIRYAPDEHPLPRVIE 287 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K + A +R+ A+ +PI P +AR+L++ + ++AIP ++ VA ++ Sbjct: 288 KAVDDGALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAIL 339 >gi|76152319|gb|ABA39820.1| HrcU [Erwinia pyrifoliae] Length = 360 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 19/353 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMRLPLAR 62 Query: 69 ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 Q L ++ S +V + T L+ + I LL IG + IQ P+ + Sbjct: 63 IGQPFELALSEVVSSALVLVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP F R++ K+++S+ L + VK + TI + LT + ++ + S Sbjct: 115 KPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAICTIFYLVLTPDLESLARLAYGDLDS 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + +V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K Sbjct: 175 FWPAVEVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMK 234 Query: 244 NRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 + ++A + S+ A +++ NPTHYA+AL Y P ++ KG++ Sbjct: 235 GHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGE 294 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AK + A + NIP+ LAR+L++ IP +AVAQ +Y++ + Sbjct: 295 AKALIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345 >gi|251789490|ref|YP_003004211.1| YscU/HrpY family type III secretion protein [Dickeya zeae Ech1591] gi|247538111|gb|ACT06732.1| type III secretion protein, YscU/HrpY family [Dickeya zeae Ech1591] Length = 361 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 168/354 (47%), Gaps = 21/354 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A L +L G+ S L L+ Sbjct: 3 EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGM----SKLQALMQL 58 Query: 69 ATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 R + H L+L A+ ++ + +M +G + IQ P+ + +K Sbjct: 59 PLSRISDPFGHAADEVFSEALALLATFCLLTISVALLMRIVGGW-IQYGPLFAVEALKLD 117 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F R++ IK+++++ L + + + +K +G + + +T +++ + + Sbjct: 118 FNRLNPINQIKQMFTMRKLTDMLTNLLKATTIGLVFWLVVTPQLEWLVELAYGDLTAFWK 177 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ V L + L V D G + + + +MS ++I++E K S G+P +K + Sbjct: 178 GVENVLKSVSRTTLSALLALGVFDFGLQKYYFLKQQRMSHEDIRNEYKNSEGDPHMKGHR 237 Query: 247 KSIARS--------RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 KS+A+ R++ K+ +A +++ NPTHYA+AL Y + P ++ KG++ Sbjct: 238 KSVAQEILNEPASPRVKPKVEDAD----LLLVNPTHYAVALFYRPGKTPLPRILLKGEDD 293 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A+ + A++ +P+ LAR+L++ VP IP + VAQ +YK+ + Sbjct: 294 HARALIARAHQAGVPVIRFIWLARTLYR-VPEGHYIPRDTLQPVAQ-VYKVLRQ 345 >gi|170737797|ref|YP_001779057.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] gi|169819985|gb|ACA94567.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] Length = 343 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 87/348 (25%), Positives = 169/348 (48%), Gaps = 24/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSI---LACLIYLLFFFSPGIYSVTSDL 62 K + P++K++ +A +G+ P S E ++ F + LA I LF ++ + D Sbjct: 3 EKDQKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGALFARVQALFRLVFD- 61 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 V A + R I LS +++V GL ++ G +Q V+ + Sbjct: 62 AVGAADPSARLAALIDGAARDWATLS---AQIVAAGLQAGLLAG----FVQVGGVMAWSR 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P R++ EG+K ++S+ NLVN K +K L+ + + E+ + P Sbjct: 115 LVPQLSRLNPAEGMKNLWSLRNLVNLAKMLMKTALLVATLGWLIVESLDPSVQSGFTRPA 174 Query: 183 SILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 SIL + K+L+++ + A + ++DI H++ K+KMS E++ E K+ G Sbjct: 175 SILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEG 230 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ Sbjct: 231 DPHIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMGSLPWVLARGEGD 288 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A+++ ++A + P LA++L++ P N I P ++AVAQL+ Sbjct: 289 AAERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLL 336 >gi|166154312|ref|YP_001654430.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|166155187|ref|YP_001653442.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335563|ref|ZP_07223807.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930300|emb|CAP03786.1| type III secretion system inner membrane protein [Chlamydia trachomatis 434/Bu] gi|165931175|emb|CAP06740.1| type III secretion system inner membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 360 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 14/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65 KTE + K++ DA +G S++ F S + ++ + FS + + S L + Sbjct: 3 EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFLTFSLASFFAEHLGSFLVSI 59 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHV 123 +A Q D ++ L + + + +P G + F+ IG ++ P + Sbjct: 60 FKTAPQN--HDPHLAIYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVG--PTFSTEVF 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP K+ + + +K+ + + + +KS KI I+ I L +N ++ + P Sbjct: 116 KPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGVPPL 174 Query: 184 ILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + F + K + I LF + V+D+ + H + +LKM K E+K E K + GNP I Sbjct: 175 VTAQVFKEILYKAVTSIGLFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK+ Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKR 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++ +PI LA L + IP Y+AV +++ Sbjct: 295 IIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338 >gi|254254348|ref|ZP_04947665.1| Type III secretory pathway component EscU [Burkholderia dolosa AUO158] gi|124898993|gb|EAY70836.1| Type III secretory pathway component EscU [Burkholderia dolosa AUO158] Length = 343 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/358 (22%), Positives = 171/358 (47%), Gaps = 44/358 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52 K + P++K++ DA +G+ P S E ++ F + L ++ L F + Sbjct: 3 EKNQQPTAKRLRDAREKGDVPKSAETISSAFFVGVCVALAVGIGTLFARLQALFRLAFDA 62 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 G ++ + VL+ A + ++ ++++V GLL ++ G + Sbjct: 63 IGAADPSARIAVLIDGAAR--------------DWAMLSAQIVAAGLLAGVLAG----FV 104 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q V+ + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ Sbjct: 105 QVGGVMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTALLVATLGWLIVESLDP 164 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228 + P SIL + K+L+++ + A + ++DI H++ K+KMS +E Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNRKMKMSIEE 220 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 ++ E K+ G+P ++ +++ +AR + + A++++ +P A+AL Y Sbjct: 221 VRREYKEDEGDPHVQAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVAL-YYGGIGTL 278 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ A+++ ++A + P LA++L+ P N I P ++ VAQL+ Sbjct: 279 PWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLL 336 >gi|331664423|ref|ZP_08365329.1| surface presentation of antigens protein SpaS [Escherichia coli TA143] gi|331058354|gb|EGI30335.1| surface presentation of antigens protein SpaS [Escherichia coli TA143] Length = 370 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|76788804|ref|YP_327890.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|237802523|ref|YP_002887717.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237804440|ref|YP_002888594.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255310893|ref|ZP_05353463.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317193|ref|ZP_05358439.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|255348453|ref|ZP_05380460.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255502995|ref|ZP_05381385.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|76167334|gb|AAX50342.1| SctU [Chlamydia trachomatis A/HAR-13] gi|231272740|emb|CAX09644.1| type III secretion system inner membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273757|emb|CAX10538.1| type III secretion system inner membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|289525135|emb|CBJ14607.1| type III secretion system inner membrane protein [Chlamydia trachomatis Sweden2] gi|296434679|gb|ADH16857.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296435608|gb|ADH17782.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296436531|gb|ADH18701.1| type III secretion system protein [Chlamydia trachomatis G/11222] gi|296437468|gb|ADH19629.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|296438396|gb|ADH20549.1| type III secretion system protein [Chlamydia trachomatis E/11023] gi|297139967|gb|ADH96725.1| type III secretion system protein [Chlamydia trachomatis G/9301] Length = 360 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 14/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65 KTE + K++ DA +G S++ F S + ++ + FS + + S L + Sbjct: 3 EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFLTFSLASFFAEHLGSFLVSI 59 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHV 123 +A Q D V+ L + + + +P G + F+ IG ++ P + Sbjct: 60 FKTAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVG--PTFSTEVF 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP K+ + + +K+ + + + +KS KI I+ I L +N ++ + P Sbjct: 116 KPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGIPPL 174 Query: 184 ILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + F + K + I +F + V+D+ + H + +LKM K E+K E K + GNP I Sbjct: 175 VTAQVFKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK+ Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKR 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++ +PI LA L + IP Y+AV +++ Sbjct: 295 IIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338 >gi|15604810|ref|NP_219594.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|255506666|ref|ZP_05382305.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|3328487|gb|AAC67682.1| Yop proteins translocation protein U [Chlamydia trachomatis D/UW-3/CX] gi|297748220|gb|ADI50766.1| SctU [Chlamydia trachomatis D-EC] gi|297749100|gb|ADI51778.1| SctU [Chlamydia trachomatis D-LC] Length = 360 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 14/344 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65 KTE + K++ DA +G S++ F S + ++ + FS + + S L + Sbjct: 3 EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFLTFSLASFFAKHLGSFLVSI 59 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHV 123 +A Q D V+ L + + + +P G + F+ IG ++ P + Sbjct: 60 FKTAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVG--PTFSTEVF 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP K+ + + +K+ + + + +KS KI I+ I L +N ++ + P Sbjct: 116 KPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGIPPL 174 Query: 184 ILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + F + K + I +F + V+D+ + H + +LKM K E+K E K + GNP I Sbjct: 175 VTAQVFKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK+ Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKR 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++ +PI LA L + IP Y+AV +++ Sbjct: 295 IIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338 >gi|46204446|ref|ZP_00049997.2| COG1377: Flagellar biosynthesis pathway, component FlhB [Magnetospirillum magnetotacticum MS-1] Length = 97 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/95 (48%), Positives = 69/95 (72%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M+ RAT++I NPTH+A+ALRY TEN AP+++AKGQ+LIA ++R IA E I + E+ Sbjct: 1 MLANVDRATVVIANPTHFAVALRYEPTENPAPLVLAKGQDLIALRIRAIAEEKGIAVIED 60 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 LARSL+ V ++ IP FY+AVAQ+++ ++ + Sbjct: 61 KPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 95 >gi|224170147|ref|XP_002339344.1| predicted protein [Populus trichocarpa] gi|222874949|gb|EEF12080.1| predicted protein [Populus trichocarpa] Length = 113 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 67/98 (68%) Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 R +MM AT+++TNPTH+A+A+RY APV+VAKGQ+ +A +RKIA E +P+ Sbjct: 3 RRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVALNIRKIAREARVPV 62 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 E P LAR+L+ P++ IP FY+AVA+++ +Y + Sbjct: 63 MENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 100 >gi|325527471|gb|EGD04805.1| flagellar biosynthesis pathway component [Burkholderia sp. TJI49] Length = 343 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/348 (24%), Positives = 168/348 (48%), Gaps = 24/348 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL--L 66 K + P++K++ +A +G+ P S E SS AC + + GI ++ + L L L Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAET--ISS--ACFAGVCIALAVGIGALFARLQALFRL 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLS----ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 + + I L+ + ++++V GLLL ++ G +Q V+ + Sbjct: 59 VFDAAGAADPSARIAVLIDGAARDWATLSAQIVAAGLLLGVLAG----FVQVGGVMAWSR 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P R++ EG+K ++S+ NLVN K +K L+ + + E+ + P Sbjct: 115 LMPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTTLLVATLGWVIVESLDAAVQSGFTRPI 174 Query: 183 SILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 SIL + K+L+++ + A + ++DI ++ K+KMS E++ E K+ G Sbjct: 175 SILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRREFNQKMKMSIDEVRREHKEDEG 230 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ Sbjct: 231 DPHIEAKRRQLAREAQFAALPDRIGFASVVVYSP-RVAVAL-YYGGVGTLPWVLARGEGE 288 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A+++ ++A + P LA+SL+ P N I ++ VAQL+ Sbjct: 289 AAERIVRLARDALRPTLANAGLAQSLYDTTPENGTIQQQHFREVAQLL 336 >gi|197122901|ref|YP_002134852.1| type III secretion exporter [Anaeromyxobacter sp. K] gi|196172750|gb|ACG73723.1| type III secretion exporter [Anaeromyxobacter sp. K] Length = 355 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 86/139 (61%), Gaps = 3/139 (2%) Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 W + + K +M+K E K E+K+ G+P+++ +++ R +R++ RA ++ NP Sbjct: 209 WRFAR---KHRMTKDEAKREVKEDEGDPLVRGQRRRRHRELLRNQARLEVPRADALVVNP 265 Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH A+ALRY + E AP + AKG+ +A++MR +A EH +P+ ++ LAR L+++V + Sbjct: 266 THVAVALRYRRDEGRAPRVTAKGKGELARQMRALAREHGVPVVQDVPLARLLYRKVKVGR 325 Query: 333 AIPPVFYKAVAQLIYKIYH 351 IP YKAVA ++ +Y Sbjct: 326 EIPAQTYKAVAAVLAFVYR 344 >gi|220917693|ref|YP_002492997.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] gi|219955547|gb|ACL65931.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] Length = 355 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 86/139 (61%), Gaps = 3/139 (2%) Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 W + + K +M+K E K E+K+ G+P+++ +++ R +R++ RA ++ NP Sbjct: 209 WRFAR---KHRMTKDEAKREVKEDEGDPLVRGQRRRRHRELLRNQARLEVPRADALVVNP 265 Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH A+ALRY + E AP + AKG+ +A++MR +A EH +P+ ++ LAR L+++V + Sbjct: 266 THVAVALRYRRDEGRAPRVTAKGKGELARQMRALAREHGVPVVQDVPLARLLYRKVKVGR 325 Query: 333 AIPPVFYKAVAQLIYKIYH 351 IP YKAVA ++ +Y Sbjct: 326 EIPAQTYKAVAAVLAFVYR 344 >gi|34500880|gb|AAQ73908.1| HrcU [Pectobacterium carotovorum subsp. carotovorum] Length = 359 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/358 (23%), Positives = 167/358 (46%), Gaps = 28/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE P+ KK+EDA +G S++ + +L C++ L S L L Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55 Query: 66 LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + QR + + + H + L+ + ++ + ++ +G +L Q P+ + Sbjct: 56 VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWL-QYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 115 KLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234 Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294 +KS+A H++M A R A +++ NPTHYA+ L Y + P ++ K Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 G+N A+ + A + +IP+ L R+L++ P IP +AVAQ +Y++ + Sbjct: 290 GENQAARDLIAQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRVLRQ 346 >gi|212711698|ref|ZP_03319826.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM 30120] gi|212685800|gb|EEB45328.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM 30120] Length = 361 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 167/348 (47%), Gaps = 28/348 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG---IYSVTSDLHVL 65 KTE P+ KKI+D+ +G + S++ SI A ++ F G +Y++ + + Sbjct: 3 EKTEKPTDKKIKDSAKKGQSYKSKD-----SIAAIVLVTGAFVVDGMSSLYNLGGLMKKI 57 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + ++D LL S +V+P L+ + G L+Q L VK Sbjct: 58 LLNPNDIYIDD------LLWQFSKIFMSIVLPILIACFLSGAIISLLQSRFRLATEAVKL 111 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT------MLDFISA 179 F +++ G K+I+S+N+L K F+K IL + ++S T + ML + Sbjct: 112 DFTKLNPIAGFKKIFSLNSL----KEFIKAILYLLVFSVSATTFFIVWRHEIFMLYRTTI 167 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 N + + T+ + + + L +A + VL D + + LKM KQE+K E K + G Sbjct: 168 NGMTTQW---VTLCIIFVFVFLAVAVIIVLVDAIAEFFLFIKNLKMEKQEVKKEHKDNEG 224 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K+ +K + + + ++ + +T ++ NPTH A+ + Y + P L+ K + L Sbjct: 225 DPHLKSARKGLHQEILSEEVKSSIQNSTFVMANPTHIAMLIYYDANISPLPFLMFKTRGL 284 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AK + K A E NIP+ + LAR +++ +S I + V Q++ Sbjct: 285 QAKAVIKYAEEQNIPVVRDIILARQIWRNYKKDSFIDEQGLQDVMQIV 332 >gi|15834985|ref|NP_296744.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270285154|ref|ZP_06194548.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270289175|ref|ZP_06195477.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|301336549|ref|ZP_07224751.1| type III secretion system protein [Chlamydia muridarum MopnTet14] gi|7190408|gb|AAF39227.1| type III secretion inner membrane protein SctU [Chlamydia muridarum Nigg] Length = 360 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/343 (25%), Positives = 157/343 (45%), Gaps = 12/343 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ F S + ++ + FS + L L S Sbjct: 3 EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFMTFSLSSF-FAEHLGGFLVS 58 Query: 69 --ATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHVK 124 T + D V+ L + + + +P G + F+ IG ++ P + K Sbjct: 59 IFRTAPQQHDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLLIGFLVVG--PTFSTEVFK 116 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P K+ + E +K+ + + + +KS KI I+ I L +N ++ + P + Sbjct: 117 PDLKKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGVPPLV 175 Query: 185 LYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 F + K + I +F + V+D+ + H + +LKM K E+K E K + GNP IK Sbjct: 176 TAQIFKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIK 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL A+++ Sbjct: 236 GRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRI 295 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A ++ +PI LA L + IP Y+AV +++ Sbjct: 296 IAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338 >gi|221209600|ref|ZP_03582581.1| bcscU [Burkholderia multivorans CGD1] gi|38639345|gb|AAR25811.1| BcscU [Burkholderia multivorans E243] gi|221170288|gb|EEE02754.1| bcscU [Burkholderia multivorans CGD1] Length = 343 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 88/366 (24%), Positives = 174/366 (47%), Gaps = 50/366 (13%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL------------- 44 MSE + P P++K++ +A +G+ P S E ++ F + L Sbjct: 1 MSEKNQP------PTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQA 54 Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104 ++ L F + G ++ + L+ +A + +LSA ++V GLLL ++ Sbjct: 55 LFRLVFDAVGAADPSARIAALIDAAAR-------------DWATLSA-QIVAAGLLLGVL 100 Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 G +Q V+ + + P R++ EG+K ++S+ NLVN K +K L+ + Sbjct: 101 AG----FVQVGGVMAWSRLVPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGW 156 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYS 220 + E+ + P SIL + K+L+++ + A + ++DI H++ Sbjct: 157 LIVESLDPSVQSGFTRPMSILA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNR 212 Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 K+KMS E++ E K+ G+P I+ +++ +AR + + A++++ +P A+AL Sbjct: 213 KMKMSIDEVRREHKEDEGDPHIEAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVALH 271 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y P ++A+G+ A+++ ++A + P LA++L+ P N I P ++ Sbjct: 272 YGGI-GTLPWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYDTTPENGTIQPQHFR 330 Query: 341 AVAQLI 346 VAQL+ Sbjct: 331 EVAQLL 336 >gi|167615475|ref|ZP_02384110.1| type III secretion system protein [Burkholderia thailandensis Bt4] Length = 360 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 173/355 (48%), Gaps = 34/355 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ +K++ A +G S++ + +++ A + L + G +T L + Sbjct: 3 EEKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVL----TAGEAMLTGGLSRAIR 58 Query: 68 SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +A D H + L L+ SA ++P + ++ G+ S Q ++ L Sbjct: 59 TAL-----DFVHGERTPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F +S GIKRI+S+ +L+ +K VK I++ +I +T ++ + A+ Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMT----SLFPLVVAS 169 Query: 181 PHSILYHAFFTVRKVLIMILLFI--------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +Y A + +VL +L+ + A D S + +M+K+E K E Sbjct: 170 ----VYEATPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKRE 225 Query: 233 IKQSYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291 K+S G+P K ++ +AR + +A +++ NPTHYA+A+RY E+ P + Sbjct: 226 HKESEGDPHTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRV 285 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + K + A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ Sbjct: 286 IEKAVDDGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339 >gi|329942812|ref|ZP_08291591.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10] gi|332287404|ref|YP_004422305.1| type III secretion system protein [Chlamydophila psittaci 6BC] gi|313847984|emb|CBY16981.1| putative membrane transport protein [Chlamydophila psittaci RD1] gi|325506497|gb|ADZ18135.1| type III secretion system protein [Chlamydophila psittaci 6BC] gi|328815072|gb|EGF85061.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10] gi|328914653|gb|AEB55486.1| type III secretion protein, hrpY/hrcU family [Chlamydophila psittaci 6BC] Length = 360 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 16/344 (4%) Query: 10 KTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSP--GIYSVTSDLHV 64 KTE + K++ DA +G S++ A F + YL FF+ G + V+ Sbjct: 4 KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFKEA 63 Query: 65 LLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 + + L +++ + L+ T L L + + L+ F++ G P + Sbjct: 64 PINHDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVG---------PTFSTEV 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 KP K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P Sbjct: 115 FKPDLKKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIVETAGVSPI 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + K + I +F + VLD+ + + +LKM K E+K E K + GNP I Sbjct: 175 VIAVIFKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK+ Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKR 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++ IPI LA L+ + IP Y+A+ +++ Sbjct: 295 IITEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338 >gi|89898354|ref|YP_515464.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89331726|dbj|BAE81319.1| type III secretory flagellar biosynthesis Yop translocation protein U [Chlamydophila felis Fe/C-56] Length = 360 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 88/348 (25%), Positives = 162/348 (46%), Gaps = 24/348 (6%) Query: 10 KTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + K++ DA +G S++ A F + YL FF+ + S + Sbjct: 4 KTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIF--- 60 Query: 67 ASATQRKLEDISH-----IVFLLTHLSL-SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 K I+H + +L L+L + L + G + F+ +G ++ P + Sbjct: 61 ------KEAPINHDPRVTLYYLQNCLTLILTTSLPLLGAVGFVGIIVGFLVVG--PTFST 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP K+ + E +K+ + + L+ +KS +KI I+ ++L +++ + Sbjct: 113 EVFKPDLKKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNRVPLIIETAGVS 172 Query: 181 PHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P ++ A F + K + I +F + VLD+ + + +LKM K E+K E K + G Sbjct: 173 P--LVIAAIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEG 230 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP IK R++ IA+ A+ +++NP A+A+ Y+ + AP ++A G NL Sbjct: 231 NPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINL 290 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AK++ A ++ IPI LA L+ + IP Y+A+ +++ Sbjct: 291 RAKRIITEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338 >gi|167828885|ref|ZP_02460356.1| type III secretion system protein [Burkholderia pseudomallei 9] Length = 360 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 77 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339 >gi|167923476|ref|ZP_02510567.1| type III secretion system protein [Burkholderia pseudomallei BCC215] Length = 360 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 77 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339 >gi|238764055|ref|ZP_04625010.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii ATCC 33638] gi|238697726|gb|EEP90488.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii ATCC 33638] Length = 358 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P++K++ +A +G S E +S + + + +FF G ++ + VL+ S Sbjct: 7 EKNEKPTAKRLREAREKGQVIKSVE---ITSGIQLAVLVAYFFLAG-DTLLDQVGVLIRS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVI------PGLLLFMMFGIGSYLIQRIPVLNLNH 122 + ++ + + F L + ++I G L+ M G L Q P+L Sbjct: 63 SIKQLQQPFT---FALARIGSECMAVLIHIVGILGGALILMTIIAG--LAQVGPLLATKA 117 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 V + ++ K+++S+ +L KS +K+ ++ T+I L Y + +++ Sbjct: 118 VAFKGEHINPINNAKQLFSLRSLFELTKSLLKVGVL-TLIFGYLLARYASSFGYLAYCGS 176 Query: 183 SILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 F T+ L+ L+ ++LD + + +LKMS +E+K E K S G+P Sbjct: 177 YCAIPVFGTLMSWLLGALIACYGVFSLLDYSFQRYNTLKQLKMSHEEVKREHKDSDGDPH 236 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK +++ + + + R+T ++ NPTH+A+ L Y + PV++ KG+ A Sbjct: 237 IKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYHPDDAPLPVVIEKGKGERAA 296 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + K+A + IPI E +LAR+L + V IP ++ V Sbjct: 297 LIIKLAQQQGIPIVENIALARTLHRDVACGDTIPEPLFEPV 337 >gi|53722644|ref|YP_111629.1| type III secretion system protein HrcU [Burkholderia pseudomallei K96243] gi|52213058|emb|CAH39096.1| putative type III secretion protein [Burkholderia pseudomallei K96243] Length = 360 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 77 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339 >gi|50121004|ref|YP_050171.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560427|gb|AAS20387.1| HrcU [Pectobacterium atrosepticum] gi|49611530|emb|CAG74978.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 359 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 162/353 (45%), Gaps = 24/353 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE P+ KK+EDA +G S++ + +L C++ L S L L Sbjct: 3 EKTEQPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55 Query: 66 LASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + QR + + + H ++ A L + + ++ I +Q P+ +K Sbjct: 56 VQLPLQRLGTPFAQVAKEVFHDAAVLAGTLCLLSAAIAVLLRIAGGWLQYGPLFAPEALK 115 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 116 LDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGF 175 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K Sbjct: 176 WQGVKALLTRITRTTLTALLVLSALDFGMQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKG 235 Query: 245 RQKSIARS--------RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 +KS+A R + K+ +A +++ NPTHYA+ L Y + P ++ KG+ Sbjct: 236 HRKSLAHELANESAAPRPKPKLEDAD----MLLVNPTHYAVGLYYRPGKTPLPRILFKGE 291 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 N A+++ A + IP+ L R+L++ P IP +AVAQ +Y++ Sbjct: 292 NKAAQELIAQAKKAGIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRV 343 >gi|167724367|ref|ZP_02407603.1| type III secretion system protein [Burkholderia pseudomallei DM98] Length = 360 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 77 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 195 VVAVLAAADYKIARVMFIRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339 >gi|167898942|ref|ZP_02486343.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|167907272|ref|ZP_02494477.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 399 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 116 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 175 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 176 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 233 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 234 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 293 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 294 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 353 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 354 ARALYR-VERDASIPEELFETVAAIL 378 >gi|167577327|ref|ZP_02370201.1| type III secretion system protein [Burkholderia thailandensis TXDOH] Length = 360 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 94/359 (26%), Positives = 175/359 (48%), Gaps = 42/359 (11%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ +K++ A +G S++ + +++ A + L + G +T L + Sbjct: 3 EEKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVL----TAGEAMLTGGLSRAIR 58 Query: 68 SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +A D H + L L+ SA ++P + ++ G+ S Q ++ L Sbjct: 59 TAL-----DFVHGERTPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F +S GIKRI+S+ +L+ +K VK I++ +I +T ++ + A+ Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMT----SLFPLVVAS 169 Query: 181 PHSILYHAFFTVRKVLIMILLFI--------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 Y A + +VL +L+ + A D S + +M+K+E K E Sbjct: 170 ----AYEATPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKRE 225 Query: 233 IKQSYGNPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 K+S G+P K ++ +AR + R K+ +A +++ NPTHYA+A+RY E+ Sbjct: 226 HKESEGDPHTKGERRRLAREIATSAPPRQKV----GQANVLVVNPTHYAVAIRYAPDEHP 281 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++ K + A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ Sbjct: 282 LPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339 >gi|83717264|ref|YP_438947.1| type III secretion system protein HrcU [Burkholderia thailandensis E264] gi|257142051|ref|ZP_05590313.1| type III secretion system protein HrcU [Burkholderia thailandensis E264] gi|83651089|gb|ABC35153.1| type III secretion inner membrane protein [Burkholderia thailandensis E264] Length = 360 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 94/359 (26%), Positives = 175/359 (48%), Gaps = 42/359 (11%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ +K++ A +G S++ + +++ A + L + G +T L + Sbjct: 3 EEKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVL----TAGEAMLTGGLSRAIR 58 Query: 68 SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +A D H + L L+ SA ++P + ++ G+ S Q ++ L Sbjct: 59 TAL-----DFVHGERTPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F +S GIKRI+S +L+ +K VK I++ +I +T ++ + A+ Sbjct: 114 EPVMPKFDAISPMAGIKRIFSTKSLLELVKMIVKAIVLTCVIWKMMT----SLFPLVVAS 169 Query: 181 PHSILYHAFFTVRKVLIMILLFI--------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +Y A + +VL +L+ + A D S + +M+K+E K E Sbjct: 170 ----VYEATPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKRE 225 Query: 233 IKQSYGNPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 K+S G+P K ++ +AR + R K+ +A +++ NPTHYA+A+RY E+ Sbjct: 226 HKESEGDPHTKGERRRLAREIATSAPPRQKV----GQANVLVVNPTHYAVAIRYAPDEHP 281 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++ K + A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ Sbjct: 282 LPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339 >gi|167915634|ref|ZP_02502725.1| type III secretion system protein [Burkholderia pseudomallei 112] Length = 396 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 113 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 172 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 173 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 230 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 231 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 290 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 291 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 350 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 351 ARALYR-VERDASIPEELFETVAAIL 375 >gi|167850345|ref|ZP_02475853.1| type III secretion system protein [Burkholderia pseudomallei B7210] Length = 420 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRYAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|218706359|ref|YP_002413878.1| surface presentation of antigens protein SpaS [Escherichia coli UMN026] gi|300898070|ref|ZP_07116438.1| surface presentation of antigens protein SpaS [Escherichia coli MS 198-1] gi|218433456|emb|CAR14358.1| Surface presentation of antigens protein [Escherichia coli UMN026] gi|300358208|gb|EFJ74078.1| surface presentation of antigens protein SpaS [Escherichia coli MS 198-1] Length = 370 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ G+P IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGSPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|253688600|ref|YP_003017790.1| type III secretion protein, YscU/HrpY family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755178|gb|ACT13254.1| type III secretion protein, YscU/HrpY family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 359 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 82/358 (22%), Positives = 168/358 (46%), Gaps = 28/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE P+ KK+EDA +G S++ + +L C++ L S L L Sbjct: 3 EKTEQPTDKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55 Query: 66 LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + QR + + + H + L+ + ++ + ++ +G + IQ P+ + Sbjct: 56 VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRIVGGW-IQYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 115 KLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234 Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294 +KS+A H++M A R A +++ NPTHYA+ L Y + P ++ K Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 G++ A+++ A + +IP+ L R+L++ P IP +AVAQ +Y++ + Sbjct: 290 GEDSAAQELIAQAKKADIPVIRFIWLTRTLYRTTPEGQYIPRETLQAVAQ-VYRVLRQ 346 >gi|294140998|ref|YP_003556976.1| type III secretion system EscU protein [Shewanella violacea DSS12] gi|293327467|dbj|BAJ02198.1| type III secretion system EscU protein [Shewanella violacea DSS12] Length = 349 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 156/340 (45%), Gaps = 9/340 (2%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS- 68 KTE P+ K++++A N G S E + L I L +F G + S ++++ ++ Sbjct: 4 KTEKPTEKQLKEARNRGQVIKSPE---IVTGLQMAIILGYFLFEGQNLMQSIMYLINSTI 60 Query: 69 -ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A LE ++ + L ++ A R + L+ + I + Q PV +KPS Sbjct: 61 DAINLPLETAANQI--LDRFAMVALRFLGGLALVLICTIIVGNIAQTGPVWAAESLKPSM 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++++ K++ S ++ +K+ VK+ ++ ++ L Y ++ Sbjct: 119 NKLNVVNNAKQMISWKSVFELVKNLVKVTVL-CLVFYYLLHRYVNSFQYLPLCGEECGIE 177 Query: 188 AFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 T+ L L V D + +LKMSK +IK E K S GNP +K ++ Sbjct: 178 VISTLITWLWGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNPEVKQKR 237 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + I R + ++++++ NPTH A+ L Y E P+++ K ++ +A + + Sbjct: 238 REIQREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMALHIVGM 297 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + IP+ E LAR+++ Q+ S I ++ VA L+ Sbjct: 298 AEKAGIPVVENIPLARAIYSQIETGSPISEDLFEPVADLL 337 >gi|226198428|ref|ZP_03793996.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|225929485|gb|EEH25504.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] Length = 420 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|53716421|ref|YP_106206.1| type III secretion system protein HrcU [Burkholderia mallei ATCC 23344] gi|52422391|gb|AAU45961.1| type III secretion inner membrane protein [Burkholderia mallei ATCC 23344] Length = 360 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 77 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339 >gi|221200564|ref|ZP_03573606.1| bcscU [Burkholderia multivorans CGD2M] gi|221209221|ref|ZP_03582212.1| bcscU [Burkholderia multivorans CGD2] gi|221170911|gb|EEE03367.1| bcscU [Burkholderia multivorans CGD2] gi|221179905|gb|EEE12310.1| bcscU [Burkholderia multivorans CGD2M] Length = 343 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 85/358 (23%), Positives = 169/358 (47%), Gaps = 44/358 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52 K + P++K++ +A +G+ P S E ++ F + L ++ L F + Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 G ++ + L+ +A + +LSA ++V GLLL ++ G + Sbjct: 63 AGAADPSARIATLIDAAAR-------------DWATLSA-QIVAAGLLLGVLAG----FV 104 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q V+ + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ Sbjct: 105 QVGGVMAWSRLVPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDP 164 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228 + P SIL + K+L+++ + A + ++DI H++ K+KMS E Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDE 220 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 ++ E K+ G+P I +++ +AR + + A++++ +P A+AL Y Sbjct: 221 VRREHKEDEGDPHIAAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVAL-YYGGIGTL 278 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ A+++ ++A P LA++L+ P N I P ++ VAQL+ Sbjct: 279 PWVLARGEGDAAERIVRLARNALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLL 336 >gi|126445400|ref|YP_001063276.1| type III secretion system protein HrcU [Burkholderia pseudomallei 668] gi|237510110|ref|ZP_04522825.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] gi|254186950|ref|ZP_04893466.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|254301368|ref|ZP_04968812.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|126224891|gb|ABN88396.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 668] gi|157810968|gb|EDO88138.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|157934634|gb|EDO90304.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|235002315|gb|EEP51739.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 420 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|217422649|ref|ZP_03454152.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|217394880|gb|EEC34899.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] Length = 420 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|134281989|ref|ZP_01768695.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|134246518|gb|EBA46606.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] Length = 420 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|168785695|ref|ZP_02810702.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|261226164|ref|ZP_05940445.1| putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK2000] gi|261256582|ref|ZP_05949115.1| putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK966] gi|189374061|gb|EDU92477.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] Length = 373 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 148/317 (46%), Gaps = 8/317 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA + SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKEQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLF 325 E IPI + LAR ++ Sbjct: 295 EIGIPIITDKKLARKIY 311 >gi|238752378|ref|ZP_04613856.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC 43380] gi|238709419|gb|EEQ01659.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC 43380] Length = 320 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 2/239 (0%) Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 S + Q P+L V+ + ++ K+++S+ +L KS +K+ ++ T+I L Sbjct: 67 SCVAQVGPLLATKAVEFKGEHINPINNAKQLFSMRSLFELTKSLLKVGVL-TLIFGYLLM 125 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQ 227 +Y T +++ S F T+ L+ LL ++LD + + +LKMS++ Sbjct: 126 HYATSFGYLTYCGSSCAIPVFATLMSWLLGALLACYVVFSLLDYSFQRYNTMKQLKMSRE 185 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 +IK E K S G+P IK +++ + + R+T ++ NPTH+A+ L Y + Sbjct: 186 DIKREHKDSDGDPEIKQKRRQLQHEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYHADDAP 245 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 PV++ KG A + K+A + +P+ E +LAR+L + V IP ++ VA ++ Sbjct: 246 LPVVIEKGAGERAALIIKLAEQQGVPVIENITLARALHRDVACGDTIPEPLFEPVAAIL 304 >gi|254185079|ref|ZP_04891668.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|184215671|gb|EDU12652.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] Length = 420 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|167820512|ref|ZP_02452192.1| type III secretion system protein [Burkholderia pseudomallei 91] Length = 427 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 144 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 203 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 204 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 261 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 262 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 321 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 322 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 381 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 382 ARALYR-VERDASIPEELFETVAAIL 406 >gi|167743331|ref|ZP_02416105.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|254194002|ref|ZP_04900434.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|169650753|gb|EDS83446.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] Length = 420 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|86157785|ref|YP_464570.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] gi|85774296|gb|ABC81133.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] Length = 355 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 86/139 (61%), Gaps = 3/139 (2%) Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 W + + K +M+K E K E+K+ G+P+++ R++ R +R++ RA ++ NP Sbjct: 209 WRFAR---KHRMTKDEAKREVKEDEGDPLVRGRRRRRHRELLRNQARLEVPRADALVVNP 265 Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH A+ALRY + E AP + AKG+ +A++MR +A EH +P+ ++ LAR L+++V + Sbjct: 266 THVAVALRYRRDEGRAPRVTAKGKGELARQMRALAREHGVPVVQDVPLARLLYRKVKVGR 325 Query: 333 AIPPVFYKAVAQLIYKIYH 351 IP YKAVA ++ +Y Sbjct: 326 EIPAQTYKAVAAVLAFVYR 344 >gi|76574808|gb|ABA47282.1| HrcU [Pseudomonas cichorii] Length = 361 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/350 (22%), Positives = 165/350 (47%), Gaps = 12/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ KK++DA +G S++ LF I A LI ++ +L VL Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDIPKLF--IFAALIEMILAMVDSGMERLKELMVLPI 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 R + + ++T L ++P L + + + +Q P+ +K F Sbjct: 61 MELDRPFG--AALGEVMTKAGLELLLFMLPVLGVAAIMRLAGGWVQFGPLFATEALKLDF 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ ++++S L N S K +++ ++ L + ++ + S Sbjct: 119 ERLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKA 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 R++ + L + L ++D + + +MS ++I+ E K+S G+P +K+ +K Sbjct: 179 LVDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRK 238 Query: 248 SIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 S+AR + A ++A + ++ NPTH+A+AL Y + P ++ KG++ A++ Sbjct: 239 SLAREISQQPGSAAPAKAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADARE 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + + A + +P+ LAR+L+++ + IP +AVAQ +Y++ + Sbjct: 299 LIERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ-VYRLLRE 346 >gi|330812427|ref|YP_004356889.1| type III secretion protein, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|312597804|gb|ADQ89919.1| RscU [Pseudomonas fluorescens] gi|327380535|gb|AEA71885.1| putative type III secretion protein, putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 366 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 173/361 (47%), Gaps = 22/361 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57 MSE+ KT+ + KKI DA N+G S++ S + A L + + Sbjct: 1 MSEDSG--EKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGD 58 Query: 58 -VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL--FMMFGIGSYLIQR 114 VT LH L + E ++H +L + +L L I L+ ++ FG Sbjct: 59 MVTFPLHRLDVDFVRAFEETLAHAGGVLLNFTLMTVGLAIVTRLVAGWIQFGF------- 111 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + ++P R++ K+++S L+N VK + +GT+I + +++ Sbjct: 112 --LFAPEALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLI 169 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + ++ + +S R ++ + L + L +LD G + + +L+MS++E++ E K Sbjct: 170 NLVNGDLNSYWRGLASLFRHIMHICLGVLLVLALLDFGLQKYFFAKRLRMSEEEVRKEFK 229 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEAT---SRATIIITNPTHYALALRYIQTENDAPVL 291 + G+P +K ++S+AR + + + T A +++ NPTH+A+AL Y E P L Sbjct: 230 EMEGDPHVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQL 289 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + KG + A+ + + A +P+ + LAR+++++ + + IP +AVA IY++ Sbjct: 290 IVKGVDAEARALIERAKVARVPVIQCIWLARTIYRE-DVGAYIPRETLQAVAH-IYRVLR 347 Query: 352 K 352 + Sbjct: 348 E 348 >gi|238563893|ref|ZP_00438080.2| type III secretion inner membrane protein [Burkholderia mallei GB8 horse 4] gi|254176635|ref|ZP_04883293.1| type III secretion inner membrane protein [Burkholderia mallei ATCC 10399] gi|254201086|ref|ZP_04907451.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei FMH] gi|254205051|ref|ZP_04911404.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei JHU] gi|147748698|gb|EDK55773.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei FMH] gi|147754637|gb|EDK61701.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei JHU] gi|160697677|gb|EDP87647.1| type III secretion inner membrane protein [Burkholderia mallei ATCC 10399] gi|238519734|gb|EEP83202.1| type III secretion inner membrane protein [Burkholderia mallei GB8 horse 4] Length = 420 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|161520299|ref|YP_001583726.1| type III secretion exporter [Burkholderia multivorans ATCC 17616] gi|189353522|ref|YP_001949149.1| flagellar biosynthesis pathway component [Burkholderia multivorans ATCC 17616] gi|160344349|gb|ABX17434.1| type III secretion exporter [Burkholderia multivorans ATCC 17616] gi|189337544|dbj|BAG46613.1| flagellar biosynthesis pathway component [Burkholderia multivorans ATCC 17616] Length = 343 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/358 (23%), Positives = 169/358 (47%), Gaps = 44/358 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52 K + P++K++ +A +G+ P S E ++ F + L ++ L F + Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 G ++ + L+ +A + +LSA ++V GLLL ++ G + Sbjct: 63 AGAADPSARIATLIDAAAR-------------DWATLSA-QIVAAGLLLGVLAG----FV 104 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 Q V+ + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ Sbjct: 105 QVGGVMAWSRLVPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDP 164 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228 + P S L + K+L+++ + A + ++DI H++ K+KMS E Sbjct: 165 SVQSGFTRPMSTLA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDE 220 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 ++ E K+ G+P I +++ +AR + + A++++ +P A+AL Y Sbjct: 221 VRREHKEDEGDPHIAAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVAL-YYGGIGTL 278 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ A+++ ++A + P LA++L+ P N I P ++ VAQL+ Sbjct: 279 PWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLL 336 >gi|76819722|ref|YP_335839.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1710b] gi|76584195|gb|ABA53669.1| type III secretion inner membrane protein [Burkholderia pseudomallei 1710b] Length = 399 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 139/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 116 LHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 175 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 176 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 233 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 234 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 293 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 294 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 353 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 354 ARALYR-VERDASIPEELFETVAAIL 378 >gi|29840222|ref|NP_829328.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29834570|gb|AAP05206.1| type III secretion protein, hrpY/hrcU family [Chlamydophila caviae GPIC] Length = 360 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 84/354 (23%), Positives = 157/354 (44%), Gaps = 36/354 (10%) Query: 10 KTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFFFS 52 KTE + K++ DA +G S++ AS F+ L + +F + Sbjct: 4 KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFKQA 63 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 P + L+ L Q L ++ L T L L + + ++ F++ G Sbjct: 64 PINHDPKVTLYYL-----QNCL-----VLILTTSLPLLGAVGFVGIIVGFLVVG------ 107 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 P + KP K+ + + +K+ + + L+ +KS +KI I+ ++L Sbjct: 108 ---PTFSTEVFKPDLKKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPL 164 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +++ +P I + K + I +F + VLD+ + + +LKM K E+K E Sbjct: 165 IIETAGVSPIVIAVIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQE 224 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K + GNP IK R++ IA+ A+ +++NP A+A+ Y+ + AP ++ Sbjct: 225 FKDTEGNPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWII 284 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A G NL AK++ A ++ +PI LA L+ + IP Y+A+ +++ Sbjct: 285 AMGINLRAKRIIVEAEKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338 >gi|2444073|gb|AAB71508.1| cytoplasmic membrane component required for type III (contact-dependent) secretion [Chlamydophila caviae] Length = 360 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/356 (23%), Positives = 159/356 (44%), Gaps = 40/356 (11%) Query: 10 KTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFFFS 52 KTE + K++ DA +G S++ AS F+ L + +F + Sbjct: 4 KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFKQA 63 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 P + L+ L Q L ++ L T L L + + ++ F++ G Sbjct: 64 PINHDPKVTLYYL-----QNCL-----VLILTTSLPLLGAVGFVGIIVGFLVVG------ 107 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 P + KP K+ + + +K+ + + L+ +KS +KI I+ ++L Sbjct: 108 ---PTFSTEVFKPDLKKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPL 164 Query: 173 MLDFISANPHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 +++ +P I+ F + K + I +F + VLD+ + + +LKM K E+K Sbjct: 165 IIETAGVSP--IVIGVIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVK 222 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E K + GNP IK R++ IA+ A+ +++NP A+A+ Y+ + AP Sbjct: 223 QEFKDTEGNPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPW 282 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++A G NL AK++ A ++ +PI LA L+ + IP Y+A+ +++ Sbjct: 283 IIAMGINLRAKRIIVEAEKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338 >gi|124382486|ref|YP_001025750.1| type III secretion system protein HrcU [Burkholderia mallei NCTC 10229] gi|126446560|ref|YP_001077835.1| type III secretion system protein HrcU [Burkholderia mallei NCTC 10247] gi|254359173|ref|ZP_04975445.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei 2002721280] gi|126239414|gb|ABO02526.1| type III secretion inner membrane protein [Burkholderia mallei NCTC 10247] gi|148028360|gb|EDK86320.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei 2002721280] gi|261826829|gb|ABM98869.2| type III secretion inner membrane protein [Burkholderia mallei NCTC 10229] Length = 420 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RGGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|167840287|ref|ZP_02466971.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 360 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 126/237 (53%), Gaps = 14/237 (5%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLD 175 ++ L V P F ++ GIKRI+S+ +L+ +K VK I++ +I +T + + Sbjct: 110 MITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAIVLACVIWKMMTSLFPLVVAS 169 Query: 176 FISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 A P L +TV K++ ++ L +A D + + +M+K+E K E K Sbjct: 170 VYEATPQ--LARVLWTVLMKLVGVVALVVAVFAAADYKIARVMFIRDNRMTKEETKREHK 227 Query: 235 QSYGNPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 +S G+P K ++ +AR + R K+ +A +++ NPTHYA+A+RY E+ P Sbjct: 228 ESEGDPHTKGERRRLAREIATSAPPRQKV----GQANVLVVNPTHYAVAIRYAPDEHPLP 283 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++ K + A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ Sbjct: 284 RVIEKAVDAGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339 >gi|254263389|ref|ZP_04954254.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] gi|254214391|gb|EET03776.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] Length = 420 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 139/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|126458610|ref|YP_001076232.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1106a] gi|242311362|ref|ZP_04810379.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|126232378|gb|ABN95791.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106a] gi|242134601|gb|EES21004.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] Length = 420 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 139/266 (52%), Gaps = 6/266 (2%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 137 LHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201 +L+ +K VK +++ + +T + + A P L +TV K+L + + Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260 +A L D + + + +M+K+E+K E K+S G+P K ++ +AR + Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI PS+ Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346 AR+L++ V +++IP ++ VA ++ Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399 >gi|62185075|ref|YP_219860.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62148142|emb|CAH63899.1| putative membrane transport protein [Chlamydophila abortus S26/3] Length = 360 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 16/344 (4%) Query: 10 KTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSP--GIYSVTSDLHV 64 KTE + K++ DA +G S++ A F + YL FF+ G + V+ Sbjct: 4 KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFKEA 63 Query: 65 LLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 + + L +++ + L+ T L L + + L+ F++ G P + Sbjct: 64 PINHDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVG---------PTFSTEV 114 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 KP K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P Sbjct: 115 FKPDLKKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPI 174 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + K + I +F + VLD+ + + +LKM K E+K E K + GN I Sbjct: 175 VIAVIFKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNLEI 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R++ IA+ A+ +++NP A+A+ YI + AP ++A G NL AK+ Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYIPEKYKAPWIIAMGINLRAKR 294 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A ++ IPI LA L+ + IP Y+A+ +++ Sbjct: 295 IITEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338 >gi|227114165|ref|ZP_03827821.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 359 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/358 (22%), Positives = 167/358 (46%), Gaps = 28/358 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE P+ KK+EDA +G S++ + +L C++ L S L L Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICIGLLECVLTL-------ADSTMGKLQTL 55 Query: 66 LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + QR + + + H + L+ + ++ + ++ +G +L Q P+ + Sbjct: 56 VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWL-QYGPLFAPEAL 114 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 115 NLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234 Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294 +KS+A H++M A R A +++ NPTHYA+ L Y + P ++ K Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 G++ A+++ A + +IP+ L R+L++ P IP +AVAQ +Y++ + Sbjct: 290 GEDSAARELIAQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRVLRQ 346 >gi|82470755|gb|ABB77407.1| HrcU [Pantoea stewartii subsp. stewartii] Length = 360 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 166/354 (46%), Gaps = 21/354 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + ++ G+ + + + + L Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVMALDDVGMQKLQALMMLPLMR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL------IQRIPVLNLNH 122 Q + +S L+ S L+I + + + L IQ P+ Sbjct: 63 LNQPFEQVLSE---------LAGSALLIVSTFFGITVAVAALLRIIGGWIQYGPLFATEA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +KP F R++ ++++S+ L + + S +K + TI + L+ + ++ + + Sbjct: 114 LKPDFNRLNPVNQFRQMFSVKKLTDMLSSMLKAAAICTIFILVLSTDLESLSRLAYGDLN 173 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + +V LL + +T+LD G + + + +MS Q+I+DE KQS G+P + Sbjct: 174 SFWPAVEVLLTRVSRQTLLTLLIMTLLDFGLQKYYFLKQQRMSHQDIRDEHKQSEGDPHM 233 Query: 243 KNRQKSIARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 K + ++A+ + + E +A +++ NPTHYA+AL Y P ++ KG++ Sbjct: 234 KGHRHAVAQELLNAPVQAVKREPLEKADLLLVNPTHYAVALYYRPELTPLPRIICKGEDS 293 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AK + A + IP+ LAR+L+ Q IP +AVA+ +Y++ + Sbjct: 294 DAKTLIVRAQQAKIPVIRFIWLARTLY-QSQEGQLIPRHTLQAVAR-VYRVLRE 345 >gi|167589635|ref|ZP_02382023.1| type III secretion exporter [Burkholderia ubonensis Bu] Length = 343 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 48/360 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + PS+K++ +A +G+ P S E SS FF ++ L L Sbjct: 3 EKNQKPSAKRLREAREKGDVPKSAET--ISSA---------FFVGACVALAVGLGALF-- 49 Query: 69 ATQRKLEDISHIVFL----------LTHLSLSASR--------LVIPGLLLFMMFGIGSY 110 +L+ + +VF L L SA+R +V GL+L ++ G Sbjct: 50 ---ERLQGLFRLVFDAAGAADPGARLAALVGSAARDWMTLSAEIVGAGLMLGLLAG---- 102 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 +Q V+ + + P R++ EG+K + S+ N+VN +K +K +L+ + + E+ Sbjct: 103 FVQVGGVMAWSRLVPQLSRLNPAEGLKNMASLRNVVNLVKMLLKTVLLVATLGWLIVESL 162 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSK 226 + P SIL + K+L+++ + A + ++DI +H++ K+KMS Sbjct: 163 DPAVQSGFTRPMSILA----LIVKLLMLLFGWAALVYVVMAIIDIVHQHHEFNKKMKMSI 218 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 E++ E K G+P I+ +++ +AR + + A++++ + + A+AL Y Sbjct: 219 DEVRREHKDDEGDPHIQAKRRQLARELQYASLQDRIDFASVVVYS-SRVAVAL-YYGGMG 276 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ A+++ ++A + P LA++L+ P N I P ++ VA L+ Sbjct: 277 SLPWVLARGEGEAAERIVRLARDALRPTLANVGLAQALYDSTPENGTIQPRHFREVAALL 336 >gi|167584007|ref|ZP_02376395.1| type III secretion system protein [Burkholderia ubonensis Bu] Length = 361 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 138/265 (52%), Gaps = 4/265 (1%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L+ SA+ ++P ++ ++ GI S Q ++ L V P F ++ GIKRI+S+ Sbjct: 77 LHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITLEPVMPKFDALNPMNGIKRIFSLK 136 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 +L+ +K VK +++ +I +T + F ++ P L +TV L+ +++ + Sbjct: 137 SLLELVKMIVKAVVLACVIWKMMT-SLFPLVVASVYEPTPQLSRVLWTVLMKLLGVVVLV 195 Query: 204 AT-LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMMEA 261 D + + +M+K+E K E K+S G+P K ++ +AR + Sbjct: 196 VVVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAPPRQK 255 Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321 +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI P +A Sbjct: 256 VGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPPVA 315 Query: 322 RSLFKQVPINSAIPPVFYKAVAQLI 346 R+L++ V ++AIP ++ VA ++ Sbjct: 316 RALYR-VERDAAIPEELFETVAAIL 339 >gi|313639087|gb|EFS04065.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL S4-171] Length = 134 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 79/126 (62%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY + Sbjct: 1 MSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDK 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 ++ AP L+AKG++ +A +R++A +P+ LARS++ + I YK V Sbjct: 61 AKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI 120 Query: 344 QLIYKI 349 +++ ++ Sbjct: 121 EVMKEL 126 >gi|27376933|ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110] gi|12620529|gb|AAG60805.1|AF322012_110 RhcU [Bradyrhizobium japonicum] gi|27350075|dbj|BAC47087.1| RhcU protein [Bradyrhizobium japonicum USDA 110] Length = 345 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/350 (23%), Positives = 158/350 (45%), Gaps = 25/350 (7%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + K P+ KK+ DA +G + +R + L S + AC + ++ G V L Sbjct: 6 EEKKLPPTPKKLRDARKKGQS--ARSSDLVSGVSACAGFGCLWWRAGAIEDKWQETVRLV 63 Query: 68 SATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFM----MFGIGSYLIQRIPVLNLN 121 Q + + + L LS++ ++ + + G ++ P+ Sbjct: 64 DKLQEQPFTSAVPQALSGLLELSIATVAPLLAAAVTAALLANVLANGGFMFASEPL---- 119 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 KP +++ +G+KRI S + + K+ K++L+G I +++T ++ ++ Sbjct: 120 --KPKLEKLDPIKGLKRIVSKRSAIELGKTLAKVVLLGAIFFLTVTASWKALVYLPVCGM 177 Query: 182 HSILYHAFFTVRKVLIMIL---LFIATLTVLDIG-WSYHQWYSKLKMSKQEIKDEIKQSY 237 + FT K+LI I + L L I W + Q ++M++ E K E K+ Sbjct: 178 GCFGF--VFTEVKLLIGIAAGAFLVGGLADLLIQRWLFMQ---DMRMTETEAKRENKEQQ 232 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K + + R ++ SRAT+I+ P + LRY++ E PVLV +G+ Sbjct: 233 GNPQVKREHRRL-RQESANEAPLGISRATLILRGPATL-IGLRYVRGETGVPVLVCRGEG 290 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 A ++ A + I E+ LAR L + + + +P ++++VA+ +Y Sbjct: 291 EAASQLLGEARALRLNIVEDNVLARQLLGKARLGNPVPSQYFESVAKALY 340 >gi|213162120|ref|ZP_03347830.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 272 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 13/256 (5%) Query: 100 LLFMMFGI-----GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 LLF+ G+ GS +Q V+ + + ++ K+I+S++++V KS +K Sbjct: 6 LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLK 65 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL----IMILLFIATLTVLD 210 +I++ I Y+ F A P+ L V ++ + ++ F + +LD Sbjct: 66 VIMLSLIFAFFF---YYYASTF-RALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILD 121 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 + Y++ LKMSK ++K E K G+P +K R++ + + ++ ++ ++ Sbjct: 122 YSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVR 181 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LARSLF +V Sbjct: 182 NPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVER 241 Query: 331 NSAIPPVFYKAVAQLI 346 IP ++ VA L+ Sbjct: 242 GDKIPETLFEPVAALL 257 >gi|271500418|ref|YP_003333443.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii Ech586] gi|270343973|gb|ACZ76738.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii Ech586] Length = 359 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 85/350 (24%), Positives = 165/350 (47%), Gaps = 13/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+SKK++DA +G S++ A L +L G+ S L L+ Sbjct: 3 EKTEKPTSKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDNGM----SKLQALMQL 58 Query: 69 ATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 R + H LSL ++ ++ + +M +G + IQ P+ + +K Sbjct: 59 PLSRLSDPFVHAADEVFSEALSLLSTFCLLTISVALLMRIVGGW-IQYGPLFAVEALKID 117 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F R++ IK+++++ L + + S +K +G + + + +++ + + Sbjct: 118 FNRLNPVNQIKQMFTMRKLTDMLTSILKATTIGLVFWLVVIPQLEWLVELAYGDLTAFWK 177 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ V L + L +LD G + + + +MS ++I++E K S G+P +K + Sbjct: 178 GVESVLKSVARTTLSSLLALAILDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHR 237 Query: 247 KSIARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 KS+A+ + + A +++ NPTHYA+AL Y + P ++ KG++ AK Sbjct: 238 KSVAQEILNEPASPRAKPNIEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDEQAKA 297 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + A N+P+ LAR+L++ VP IP ++VAQ +Y++ + Sbjct: 298 LIARAQHANVPVIRFIWLARTLYR-VPEGHYIPRHTLQSVAQ-VYRVLRQ 345 >gi|213416632|ref|ZP_03349776.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 338 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 13/256 (5%) Query: 100 LLFMMFGI-----GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 LLF+ G+ GS +Q V+ + + ++ K+I+S++++V KS +K Sbjct: 72 LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLK 131 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL----IMILLFIATLTVLD 210 +I++ I Y+ F A P+ L V ++ + ++ F + +LD Sbjct: 132 VIMLSLIFAFFF---YYYASTF-RALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILD 187 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 + Y++ LKMSK ++K E K G+P +K R++ + + ++ ++ ++ Sbjct: 188 YSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVR 247 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LARSLF +V Sbjct: 248 NPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVER 307 Query: 331 NSAIPPVFYKAVAQLI 346 IP ++ VA L+ Sbjct: 308 GDKIPETLFEPVAALL 323 >gi|238785152|ref|ZP_04629146.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri ATCC 43970] gi|238713967|gb|EEQ05985.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri ATCC 43970] Length = 332 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%) Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 K+++S+ +L KS +K+ ++ T+I L +Y L +++ F T+ L Sbjct: 107 KQLFSLRSLFELTKSLLKVGVL-TLIFGYLLMHYAASLGYLAYCGSQCAIPVFATLMGWL 165 Query: 197 IMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255 + L+ +++D + + +LKMS +E+K E K+S G+P IK +++ + + Sbjct: 166 LGALIACYMVFSLMDYAFQRYNTMKQLKMSLEEVKREYKESDGDPHIKQKRRQLQQEVQS 225 Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315 + RAT ++ NPTH+A+ L Y + PV++ KG A + K+A + IP+ Sbjct: 226 GSFAKNVQRATAVVRNPTHFAVCLLYHPEDAPLPVVIEKGHGERAALIIKLAEQQGIPVV 285 Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAV 342 E +LAR+L V IP F++ V Sbjct: 286 ENIALARALHHGVACGETIPEQFFEPV 312 >gi|146305090|ref|YP_001185555.1| YscU/HrpY family type III secretion protein [Pseudomonas mendocina ymp] gi|145573291|gb|ABP82823.1| type III secretion protein, YscU/HrpY family [Pseudomonas mendocina ymp] Length = 359 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 90/352 (25%), Positives = 164/352 (46%), Gaps = 24/352 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ S +L L+ +S SV H L+A Sbjct: 3 EKTEKATPKQLRDAREKGQIAQSQDVS---KLLILLMVSEITWSLATESVQRLQH-LMAL 58 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP--------VLNL 120 A + IV L +++ LL F++F +G ++ R+ + Sbjct: 59 AINATGQPFLRIVGQLVDEAVTV-------LLGFLIFSVGVAMVMRLAGGWAQFGFLFAP 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K F +++ +K+++S NL N + S +K ++G + + L T++ +++ Sbjct: 112 KALKIDFNKLNPFPQLKQMFSAQNLTNLLMSILKAAVIGITLYVLLWPELGTLILLANSD 171 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + R +L L + L +D G + KL+MSK ++K E KQS G+P Sbjct: 172 LDTYWQSLMEVFRYILRCTLGLLLVLAAVDFGLQKYFHAKKLRMSKDDVKKEYKQSEGDP 231 Query: 241 IIKNRQKSIARSRIRHKMMEAT---SRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 ++K +++ +A + A A +++ NPTHYA+AL Y + P++ KG++ Sbjct: 232 MVKGQRRQLAHELLNQPPSTAARPVEEADMLVVNPTHYAVALYYRPGKTPLPMIHCKGED 291 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + A + IP+ + LAR+L+K V IP +AVA IY++ Sbjct: 292 EDALALIARAKKARIPVVQSVWLARTLYK-VNAGRHIPRPTLEAVAH-IYQL 341 >gi|237678814|emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii] Length = 345 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 85/357 (23%), Positives = 160/357 (44%), Gaps = 39/357 (10%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + K P+ KK+ DA +G + +R A L S + AC ++ G ++ H Sbjct: 6 EEKKLPPTPKKLRDARKKGQS--ARSADLVSGVSACAGLSCLWWRAG--AIEDKWH---- 57 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----------- 116 T R ++ + F SA + GLL + +G L + Sbjct: 58 -ETVRLIDKLQEQPFT------SAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANG 110 Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 ++ L +KP +++ +G+ RI S + + K+ VK++L+GT ++T ++ ++ Sbjct: 111 GFMIALEPLKPKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALV 170 Query: 175 DFISANPHSILYHAFFTVRKVLIMIL---LFIATLTVLDIG-WSYHQWYSKLKMSKQEIK 230 + FT K+L I + LT L I W + Q +++M++ E K Sbjct: 171 YLPVCGMGC--FGLVFTEVKLLAGIAGGAFLVGGLTDLLIQRWLFLQ---EMRMTETEAK 225 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E K+ GNP +K + + R ++ RA +I+T T + LRY++ E P+ Sbjct: 226 RENKEQQGNPQVKREHRRL-RQESANEAPLGVHRANLILTGSTTL-VGLRYVRGETGVPI 283 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 LV +G++ A K+ A + + ++ LAR L + + +P +++AVA+ +Y Sbjct: 284 LVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAKLGNPVPSQYFEAVAKALY 340 >gi|213618546|ref|ZP_03372372.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 261 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 134/260 (51%), Gaps = 7/260 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMME 260 +K + + + R+ + +MME Sbjct: 239 HVKGKIRQMQRAAAQRRMME 258 >gi|167841178|ref|ZP_02467862.1| secretion system apparatus protein SsaU [Burkholderia thailandensis MSMB43] Length = 359 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 162/354 (45%), Gaps = 25/354 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK DA +G S E + + + L Y LF H++ A Sbjct: 3 EKTEQPTAKKRADARRKGQVAKSVEITSGAQLAVLLGYFLF----------EGPHLMQAF 52 Query: 69 AT-QRKLEDI--SHIVFLLTH----LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 T R D+ +V L H L +R VI L+ + + + + Q P+L Sbjct: 53 ETLTRASIDVINDDLVTALGHWLGVLGAVVTRFVIGLALVVIGVTVIAVVAQIGPLLASE 112 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +KPS +++ K+++S+ +L F KS K+ ++ ++I L Y L F+ P Sbjct: 113 ALKPSVDKINPINNAKQMFSMKSLFEFAKSLFKVGVL-SLIFYYLIREYAPSLQFL---P 168 Query: 182 HSILYHAF-FTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + F +VR + M ++ F + D + + +L MS ++IK E K S Sbjct: 169 LCSVECGFAVSVRLLYWMWAALIGFYVLFGLADFAFQRYNTTKQLMMSIEDIKQEFKNSE 228 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K+++K I R + +++T+++ NPTH A+ L Y P +V G Sbjct: 229 GNPEMKHKRKEIHREVQSGSLASNVAKSTVVVRNPTHVAVCLYYDPIAAPLPEVVETGHG 288 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A + +A +P+ E +AR+L ++ + IPP ++ VA ++ + H Sbjct: 289 KRALHIVALAERAGVPVVENVPVARALAARLAVGQVIPPDLFEPVAHILRLVMH 342 >gi|14588842|emb|CAA68101.2| HrcU protein [Pantoea agglomerans] Length = 360 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 170/353 (48%), Gaps = 25/353 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTEKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62 Query: 69 ATQ---RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 Q + + +++ LL + + + LL IG + IQ ++ +KP Sbjct: 63 LNQPFEQAVNEVAGSALLLVTTFFGIT-VAVAALLRI----IGGW-IQYGLLIAPETIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F R++ K+++S+ L + + + +K + TI + L + LD +S + L Sbjct: 117 DFNRLNPMNQFKQMFSVKKLTDMLNNILKAAAICTIFYLVLNPD----LDALSRLAYGDL 172 Query: 186 YHAFFTVRKVLI-----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +F+ +V++ LL + LT+LD G + + + +MS +I+DE KQS G+P Sbjct: 173 -DSFWPAVEVMLTRVSRQTLLTLLILTLLDFGLQKYFFLKQQRMSHHDIRDEYKQSEGDP 231 Query: 241 IIKNRQKSIARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 +K + ++A+ + E +A +++ NPTHYA+AL Y P +V KG+ Sbjct: 232 HMKGHRHAVAQELLNAPASPVKREPLEKADLLLVNPTHYAVALYYRPALTPLPRIVCKGE 291 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + AK + A + NIP+ LAR+L++ IP +AVAQ +Y++ Sbjct: 292 DNEAKTLIARAQKANIPVIRFVWLARTLYRSEE-GQLIPRHTLQAVAQ-VYRV 342 >gi|107025878|ref|YP_623389.1| type III secretion exporter [Burkholderia cenocepacia AU 1054] gi|116692938|ref|YP_838471.1| type III secretion exporter [Burkholderia cenocepacia HI2424] gi|105895252|gb|ABF78416.1| type III secretion exporter [Burkholderia cenocepacia AU 1054] gi|116650938|gb|ABK11578.1| type III secretion exporter [Burkholderia cenocepacia HI2424] Length = 343 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/360 (23%), Positives = 164/360 (45%), Gaps = 48/360 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE------------------ASLFSSILACLIYLLFF 50 K + P++K++ +A +G+ P S E SLF+ + A ++ L F Sbjct: 3 EKDQKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA--LFRLVF 60 Query: 51 FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 + G ++ L L+ A + + IV L A + + G Sbjct: 61 DAVGAADPSARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGG------------ 108 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 V+ + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ Sbjct: 109 ------VMAWSRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESL 162 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSK 226 + P SIL + K+L+++ + A + ++DI H++ K+KMS Sbjct: 163 DPSVQSGFTRPASILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSI 218 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 E++ E K+ G+P I+ +++ +AR + + A++++ +P A+AL Y Sbjct: 219 DEVRREHKEDEGDPHIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMG 276 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ +++ ++A + P LA++L++ P N I P ++AVAQL+ Sbjct: 277 SLPWVLARGEGDAGERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLL 336 >gi|261344588|ref|ZP_05972232.1| type III secretion system protein BsaZ [Providencia rustigianii DSM 4541] gi|282567502|gb|EFB73037.1| type III secretion system protein BsaZ [Providencia rustigianii DSM 4541] Length = 361 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 166/346 (47%), Gaps = 24/346 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI+D+ +G + S++ ++I+ + L+ + +Y + + +L Sbjct: 3 EKTEKPTDKKIKDSAKKGQSFKSKDT--VAAIVLVVGALVIDGAASLYELGGLMKRILLH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 DI HI LL S LV+P L+ + G L+Q L +K F Sbjct: 61 PY-----DI-HIDNLLWQFSKIFLSLVLPILIACFLSGTIVSLLQSRFRLATEAIKIDFT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-------MLDFISANP 181 +++ G K+I+S+N+L K +K IL + +IS +F ML + N Sbjct: 115 KLNPIAGFKKIFSLNSL----KELIKAILYLLVFSIS-AATFFVVWRQEIFMLYRTTING 169 Query: 182 HSILYHAFFTVRKVLIMILLFIAT-LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ T+ + + + L +A + V+D + + LKM KQE+K E K + G+P Sbjct: 170 ---MMSSWVTLCILFVFVFLAVAVFIVVIDAIAEFFLFIKNLKMEKQEVKKEFKDNEGDP 226 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK+ +K + + + ++ +T I+ NPTH A+ + Y P L+AK + + A Sbjct: 227 HIKSARKGLHQEILSEEVKSNVRNSTFIMANPTHIAMLIYYDSNIAPLPFLMAKMRGVQA 286 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K + K A + +P+ + LAR +++ +S I ++V Q+I Sbjct: 287 KAIIKYAQQQGVPVVRDIILARQIWRTYKKDSFIDDQGLQSVMQII 332 >gi|238787480|ref|ZP_04631278.1| Type III secretion protein, YscU/HrpY family [Yersinia frederiksenii ATCC 33641] gi|238724267|gb|EEQ15909.1| Type III secretion protein, YscU/HrpY family [Yersinia frederiksenii ATCC 33641] Length = 321 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 125/253 (49%), Gaps = 4/253 (1%) Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 ++ G L+ M G + Q P+L V+ + ++ K+++S+++L KS +K Sbjct: 55 ILGGALVLMTLLSG--IAQVGPLLATKAVEFKGEHINPINNAKQLFSLHSLFELSKSLLK 112 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK-VLIMILLFIATLTVLDIGW 213 + ++ T+I L Y +++ S F T+ +L ++ +++D + Sbjct: 113 VGVL-TLIFGYLLIRYAPSFGYLAYCGSSCAIPVFTTLMSWILGALIACYVVFSLMDYSF 171 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 + +LKMS E+K E K S G+P IK +++ + + + R+T ++ NPT Sbjct: 172 QRYNTMKQLKMSHDEVKREHKDSDGDPHIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPT 231 Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 H+A+ L Y + P+++ KG A + KIA + IP+ E +LAR+L + V + Sbjct: 232 HFAVCLFYHADDAPLPIVIEKGTGERAALIVKIAEQQGIPVVENITLARALHRDVDCGNT 291 Query: 334 IPPVFYKAVAQLI 346 IP ++ VA ++ Sbjct: 292 IPESLFEPVAAIL 304 >gi|254575135|gb|ACT68036.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 365 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 16/321 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL---FFFSPGIYSVTSDLHVL 65 KTE P+SKK +D+ +G S++ + + IL IY L F P I T L Sbjct: 3 EKTEQPTSKKRKDSAKKGQTFKSKDV-ITTVILLVGIYFLAHAVSFGPFISFYTHLLQYT 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L D++ I F L +P + + + G + L+Q L +K Sbjct: 62 TRPGMGVFLLDLARIFF----------TLALPFIAVCTLVGFAATLLQTGFTLATEAIKL 111 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHSI 184 +FK ++ EG+K+I+S+ + +KS +++ + ++ L A+ P + Sbjct: 112 NFKALNPVEGVKKIFSMRTVKELVKSLCYLVVFAATCHSLIQQDLRQALTLYRADMPGLV 171 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 ++ V++ I I L + D+ Y + +KM K E+K E K+S GNP IK+ Sbjct: 172 AVWVALALKAVMVFIAWSIFVL-LADLLVEYFLHFKDMKMDKHEVKQEHKESDGNPQIKS 230 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++ + + + M A + +++ NPTH A+A+ + P + + NL AK Sbjct: 231 ARRRTHQDLLSGEEMAAVRNSEVVLANPTHIAMAVYFNPEVASLPFIALRCTNLKAKAAI 290 Query: 305 KIAYEHNIPIFEEPSLARSLF 325 A + +P+ L R L+ Sbjct: 291 AYAEKIGVPVVRNIPLTRRLY 311 >gi|51103122|gb|AAT96265.1| hrcU [Pseudomonas viridiflava] Length = 361 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/350 (23%), Positives = 160/350 (45%), Gaps = 12/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ KK++DA +G S++ LF I A L+ ++ G S L L Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLF--IFAALMEMILGLVDGGMSRLKALIALPL 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + R + + +LT ++P L + + +Q P+ + +K F Sbjct: 61 TELDRPFN--AALGEVLTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDF 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ K+++S L N S K +++ ++ + L ++ + S Sbjct: 119 ERLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMA 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + L + L LD + + +MS ++I+ E K+S G+P +K+ +K Sbjct: 179 LVELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRK 238 Query: 248 SIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++AR A +RA + ++ NPTH+A+AL Y + P ++ KG++ A++ Sbjct: 239 ALAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEARE 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + + A E +P+ LAR+L+++ + IP +AVAQ +Y++ + Sbjct: 299 LIERAREAGVPVVRFVWLARTLYREN-VGQFIPRATLQAVAQ-VYRLLRE 346 >gi|254250203|ref|ZP_04943523.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] gi|124876704|gb|EAY66694.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] Length = 343 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 164/360 (45%), Gaps = 48/360 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE------------------ASLFSSILACLIYLLFF 50 K + P++K++ +A +G+ P S E SLF+ + A ++ L F Sbjct: 3 EKDQKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA--LFRLVF 60 Query: 51 FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110 + G + L L+ A + + IV L A + + G Sbjct: 61 DAVGAADPAARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGG------------ 108 Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 V+ + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ Sbjct: 109 ------VMAWSRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESL 162 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSK 226 + P SIL + K+L+++ + A + ++DI H++ K+KMS Sbjct: 163 DPSVQSGFTRPASILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSI 218 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 E++ E K+ G+P I+ +++ +AR + + A++++ +P A+AL Y Sbjct: 219 DEVRREHKEDEGDPHIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMG 276 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ A+++ ++A + P LA++L++ P N I P ++AVAQL+ Sbjct: 277 SLPWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLL 336 >gi|218515300|ref|ZP_03512140.1| flagellar biosynthesis protein FlhB [Rhizobium etli 8C-3] Length = 151 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 70/121 (57%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+++K DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 31 DDDKDSKTEAPTARKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 90 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 91 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 150 Query: 124 K 124 + Sbjct: 151 R 151 >gi|254439657|ref|ZP_05053151.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307] gi|198255103|gb|EDY79417.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307] Length = 176 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 5/149 (3%) Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA-----RSRIRHKMMEAT 262 + D+ W +Q + KM+ QE+KDE K++ G+P +K + + + R++ R M+ Sbjct: 1 MFDVVWQQYQHNQEQKMTLQEVKDESKETEGSPELKAKIRRLQMTAGKRAKERRAAMDKV 60 Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322 +T IITNPTH+A+AL+Y AP ++A G+ A ++ +I E + +F LAR Sbjct: 61 PTSTAIITNPTHFAVALKYEVGTPGAPEILAMGRGHQAHEIIRIGTESGVTVFRNELLAR 120 Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +LF I IP Y AVA ++ IY Sbjct: 121 ALFFAGNIGEEIPSPLYTAVASVLAFIYQ 149 >gi|330876191|gb|EGH10340.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 348 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/362 (22%), Positives = 164/362 (45%), Gaps = 44/362 (12%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + K++ + KK+ DA +G +++ L S ++ L L + Sbjct: 2 GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46 Query: 64 VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 VLL A A L D++ +++ LL H A ++VI L + F +G+ + Sbjct: 47 VLLPKARAQVEALIDLTALIYIEPFAEVWPRLLDH----AEQIVIGITLPVVAFTVGAVI 102 Query: 112 I-----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 + R V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L+G + Sbjct: 103 LTNIVTMRGVVFSVEPIQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVG 162 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKL 222 + +++ S + F+ V K L+ + L + + VL W + + ++ Sbjct: 163 RQALQALMES-SRCGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EM 218 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 KMS E K E K G+P+IK ++ R RA+++I + + + +RY+ Sbjct: 219 KMSHSEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYV 278 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + E P++V + + + A I + + SLA ++ ++ +P ++AV Sbjct: 279 RGETPVPIVVCRAAPHDSAALLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAV 338 Query: 343 AQ 344 A Sbjct: 339 AD 340 >gi|237800778|ref|ZP_04589239.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023636|gb|EGI03693.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 348 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/362 (22%), Positives = 165/362 (45%), Gaps = 44/362 (12%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + K++ + KK+ DA +G +++ L S ++ L L + Sbjct: 2 GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46 Query: 64 VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 VLL A A L D++ +++ LL H A ++VI L + +G+ + Sbjct: 47 VLLPRARAQVEALIDLAALIYIEPFNDVWPRLLDH----AEQIVIGITLPVVAVTVGAVI 102 Query: 112 IQRIP-----VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 + I V ++ V+P KR++ EG KRI+++ NL+ F+K VK++L+G + Sbjct: 103 LTNIVTMKGVVFSVEPVQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVMLLGLAFYVVG 162 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKL 222 + +++ S + F+ V K L+ + L + + VL W + + ++ Sbjct: 163 RQALQALMES-SRCGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EM 218 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 KMS E K E K G+P+IK ++ R +RA+++I + + + +RY+ Sbjct: 219 KMSHSEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYV 278 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + E P++V + + + A I ++ + +LA S+ K+ +P ++AV Sbjct: 279 RGETPVPIVVCRAAQHESAVLLAEATPLGIAVWPDAALAESIAKRSVAGDPVPENTFQAV 338 Query: 343 AQ 344 A Sbjct: 339 AD 340 >gi|148645118|gb|ABR01083.1| FlhB [uncultured Geobacter sp.] gi|148645120|gb|ABR01084.1| FlhB [uncultured Geobacter sp.] Length = 114 Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 70/113 (61%) Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE K G+P +K++ K + + ++ + A +IITNPTH+A+AL+Y + Sbjct: 1 QEVKDEHKDMEGDPQVKSKIKGLQFQKAFQRLQKIIPTADVIITNPTHFAVALKYDRDRM 60 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 APV++AKG + +A++++ +A E+NI + E LAR L+ QV IP Y Sbjct: 61 AAPVVIAKGADFMAQRIKALARENNITLVENRFLARELYAQVKEGEEIPEALY 113 >gi|229588264|ref|YP_002870383.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360130|emb|CAY46987.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 365 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 80/354 (22%), Positives = 172/354 (48%), Gaps = 21/354 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ + K A S+KK+ D +G S++ + ++ A LF + + Sbjct: 2 SDSGEKKHPA-SAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLML 60 Query: 64 VLLASATQ---RKLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + L+ TQ R LE++ VF L + + + +M FG+ + Sbjct: 61 LPLSRLTQPFTRALEEVLFEGMTVFFSFALLMVGVAITTKLISSWMQFGL---------L 111 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +K F R++ +K+++S L+N + S K L+ +I+ + + + T+++ Sbjct: 112 FAPETLKLDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLGTLINLA 171 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +++ S + R +L + L + L ++D+ H + +++M++ E+ E K Sbjct: 172 TSDLQSYILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDME 231 Query: 238 GNPIIKNRQKSIARSRIRHK---MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P +K +++S+A + + + + +++ NPTH+A+AL Y + P+LV+K Sbjct: 232 GDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSK 291 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 G + A+ + + A ++P+ + LAR+L+ + + ++IP +AVA LIY+ Sbjct: 292 GTDDEARTLIRRAKAADVPVIQCVWLARTLYTK-KLGASIPRETLRAVA-LIYR 343 >gi|238793341|ref|ZP_04636967.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia ATCC 29909] gi|238727310|gb|EEQ18838.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia ATCC 29909] Length = 332 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 K+++S+ ++ KS +K+ ++ T+I L +Y +++ F T+ L Sbjct: 107 KQLFSLRSVFELTKSLLKVGVL-TLIFGYLLLHYAVSFGYLAYCGSRCAIPVFATLMSWL 165 Query: 197 IMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255 + L+ +++D + + +LKMS +EIK E K S G+P IK +++ + Sbjct: 166 LGALVACYVVFSLMDYAFQRYNTMKQLKMSLEEIKREHKDSNGDPHIKQKRRQLQHEEQS 225 Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315 + R+T ++ NPTH+A+ L Y + PV++ KG A + +A E IP+ Sbjct: 226 GSFAKNVRRSTAVVRNPTHFAVCLFYHADDAPLPVVIEKGHGEQAALIIALAEEQGIPVV 285 Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAV 342 E +LAR+L + V IP F++ V Sbjct: 286 ENIALARALHRDVACGDTIPEQFFEPV 312 >gi|293416348|ref|ZP_06658987.1| hypothetical protein ECDG_03102 [Escherichia coli B185] gi|291431704|gb|EFF04687.1| hypothetical protein ECDG_03102 [Escherichia coli B185] Length = 362 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 81/327 (24%), Positives = 154/327 (47%), Gaps = 26/327 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K+ E+A +G + SR+ I+ACL + + S+ S + VL + Sbjct: 4 NKTEKPTRKRREEAARKGQSFRSRDF-----IVACLTLGGTAYLASVASLRSLMEVLGQA 58 Query: 69 AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + Q + D + VF S ++++P L L + ++Q VL ++P Sbjct: 59 VSFHFQINIADYTEQVFC------SGMKIILPFLALCLFCSALPSILQTGFVLATKALQP 112 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT---ENYFTMLDFISAN-- 180 + +GIK+I+S+ + +K+ I+ +G+ I + EN + ++ N Sbjct: 113 RLSALDPTKGIKKIFSLRTVKEAVKA---ILYLGSFIISGMLFWFENKRLVFSQVNGNLF 169 Query: 181 -PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + H F++ + + L + +LD Y +KM K+E+K E+K++ GN Sbjct: 170 VVADVWRHLLFSL---VALCLGCSVIILLLDALAEYFLVMKDMKMDKEEVKREMKETEGN 226 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K+R++ I + ++ + +II NPTH A+ + + P++ + N Sbjct: 227 PEVKSRRREIHMDILSEQIKSDIDNSRLIIANPTHIAVGIYFKPEIAPYPLISVREANQR 286 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFK 326 A +R+ A + IP+ + LAR +FK Sbjct: 287 ALAVRQYAEKVGIPVVVDIRLARRIFK 313 >gi|51103164|gb|AAT96306.1| HrcU [Pseudomonas viridiflava] Length = 361 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 12/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ KK++DA +G S++ LF I A L+ ++ G S L L Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLF--IFAALMEMILGLVDGGMSRLKALIALPL 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + R + + +LT ++P L + + +Q P+ + +K F Sbjct: 61 TELDRPFN--AALGEVLTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDF 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ K+++S L N S K +++ ++ + L ++ + S Sbjct: 119 ERLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMA 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + L + L LD + + +MS ++I+ E K+S G+P +K+ +K Sbjct: 179 LVELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRK 238 Query: 248 SIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++AR +RA + ++ NPTH+A+AL Y + P ++ KG++ A++ Sbjct: 239 ALAREITDQPGSAVPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDAEARE 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + + A E +P+ LAR+L+++ + IP +AVAQ +Y++ + Sbjct: 299 LIERAREAGVPVVRFVWLARTLYREN-VGQFIPRATLQAVAQ-VYRLLRE 346 >gi|15042145|gb|AAK81926.1|AF292566_10 RscU [Pseudomonas fluorescens] Length = 365 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 80/354 (22%), Positives = 172/354 (48%), Gaps = 21/354 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ + K A S+KK+ D +G S++ + ++ A LF + + Sbjct: 2 SDSGEKKHPA-SAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLML 60 Query: 64 VLLASATQ---RKLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + L+ TQ R LE++ VF L + + + +M FG+ + Sbjct: 61 LPLSRLTQPFTRALEEVLFEGMTVFFSFALVMVGVAITTKLISSWMQFGL---------L 111 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +K F R++ +K+++S L+N + S K L+ +I+ + + + T+++ Sbjct: 112 FAPETLKLDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLDTLINLA 171 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +++ S + R +L + L + L ++D+ H + +++M++ E+ E K Sbjct: 172 TSDLQSYILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDME 231 Query: 238 GNPIIKNRQKSIARSRIRHK---MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P +K +++S+A + + + + +++ NPTH+A+AL Y + P+LV+K Sbjct: 232 GDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSK 291 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 G + A+ + + A ++P+ + LAR+L+ + + ++IP +AVA LIY+ Sbjct: 292 GTDDEARTLIRRAKAADVPVIQCVWLARTLYTK-KLGASIPRETLRAVA-LIYR 343 >gi|85060059|ref|YP_455761.1| surface presentation of antigens protein SpaS [Sodalis glossinidius str. 'morsitans'] gi|45504778|gb|AAS66868.1| SpaS [Sodalis glossinidius] gi|84780579|dbj|BAE75356.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 352 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/320 (24%), Positives = 150/320 (46%), Gaps = 14/320 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS--DLHVLL 66 NKTE P+ K++ DA +G A SR+ I+AC++ G+ +TS L L+ Sbjct: 3 NKTEKPTPKRLRDAAKKGQAFKSRDV-----IIACMMLC------GVCWLTSFTSLESLM 51 Query: 67 ASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 Q + + S + L +A ++++P + + ++ L+Q +L K Sbjct: 52 DLYRQMVVGNFSLSLTAYRNALMFTALQILLPIIAMGIVASALPLLLQTGFMLATRAFKL 111 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F+ ++ GIK+I+S+ + +K+ + + + I + + + + ANP I+ Sbjct: 112 NFQALNPTRGIKKIFSLRTAKDCVKALLYLAAFAIALMIVWRTHRQLLFEQLFANPQDIV 171 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +++ LL I + +LDI Y LKM KQE++ E+K+ G+P IK+R Sbjct: 172 AIWRQLLMSLVLTCLLCIVCIVILDIVAEYFLHLRSLKMDKQEVRREMKEQEGDPEIKHR 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + + +II NPTH A+ + + P + +N A +R Sbjct: 232 RREAHMEILSEQTQADIKGSQLIIANPTHLAVGIYHNPDLTPLPFISVLERNQRALAVRD 291 Query: 306 IAYEHNIPIFEEPSLARSLF 325 A + + + E+ LAR ++ Sbjct: 292 YAKKVGVSVIEDVQLARRIY 311 >gi|182440974|dbj|BAG24099.1| HrcU [Pseudomonas cichorii] Length = 361 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/350 (22%), Positives = 160/350 (45%), Gaps = 12/350 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ KK++DA +G S++ LF I A LI ++ L +L Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDIPKLF--IFAALIEMILAMVDSGMERLKKLIMLPM 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 R + + ++T L ++P L + + + +Q P+ +K F Sbjct: 61 MELDRPFG--AALGEVMTKAGLELLLFMLPVLGVAAVMRLAGGWVQFGPLFATEALKLDF 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ ++++S L N S K +++ ++ L + ++ + S Sbjct: 119 ERLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKA 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 R++ + L + L ++D + + +MS ++I+ E K+S G+P +K+ +K Sbjct: 179 LVDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRK 238 Query: 248 SIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 S+A + A +++ NPTH+A+AL Y + P ++ KG++ A++ Sbjct: 239 SLAHEISQQPASAAPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADARE 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + + A + +P+ LAR+L+++ + IP +AVAQ +Y++ + Sbjct: 299 LIERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ-VYRLLRE 346 >gi|220913714|ref|YP_002489023.1| type III secretion exporter [Arthrobacter chlorophenolicus A6] gi|219860592|gb|ACL40934.1| type III secretion exporter [Arthrobacter chlorophenolicus A6] Length = 359 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 116/224 (51%), Gaps = 3/224 (1%) Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+ +L G+KR++ + + +K+ +K ++VG I+ S+ + +L P S Sbjct: 116 RAEFEHFNLLSGMKRLFGMQAVWGGLKALLKAVVVG-IVLYSVVQGLIPVLLTAGGLPVS 174 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWS-YHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + A L+ + + + K +MSK+E+ DE K + G+P++ Sbjct: 175 GVIAAAADGIGALVQCAVAAGLVLAAVDVLVVMRRNRKKTRMSKKEVTDENKNTEGDPLV 234 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++ ++S + R++M+ A + A +++ NPTH A+AL+Y AP +VAKG +IA + Sbjct: 235 RSHRRSRQLAMSRNRMIAAIADADVVLVNPTHVAVALKY-DAGKSAPRVVAKGAGVIAAR 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +R A +P+ ++ LAR+L + IP Y+AVA ++ Sbjct: 294 IRAEAEAKEVPMVQDIPLARALHSACELGQEIPVELYRAVAGVL 337 >gi|254460321|ref|ZP_05073737.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium HTCC2083] gi|206676910|gb|EDZ41397.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium HTCC2083] Length = 137 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 76/120 (63%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MS +E++DE K+S G P +K +++ A+ ++MM A ++I NPTHYA+AL++ Sbjct: 1 MSHKELQDESKESEGAPHLKQARRARAQEVAMNQMMGEFPTADVVIVNPTHYAIALKWEG 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 + + AP+ VAKG + IA ++++ A + + I +P AR+++ V I I P +Y+AVA Sbjct: 61 SRSAAPICVAKGVDDIAMRIKEAAKDAKVAIHSDPPTARAIYAVVEIGQEINPEYYEAVA 120 >gi|1648939|gb|AAB17687.1| putative [Sinorhizobium fredii] Length = 351 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 86/355 (24%), Positives = 157/355 (44%), Gaps = 33/355 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D + K+ + KK+ DA G P S + ++ A L YL + + Sbjct: 2 SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKCREA 59 Query: 64 VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQR 114 +LL KL++ + + LL L+L+ G LL +FG + + L R Sbjct: 60 LLLTD----KLQNLPFNLAVRQALVLLVELTLATV-----GPLLSALFGAVILAALLANR 110 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V +L +KP+F++++ + +KR+ S + V K+ K++++G ++ + TM+ Sbjct: 111 GFVFSLEPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV 170 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY-SKLKMSKQEIKDEI 233 + FT K LI I + L + +++M+K EIK E+ Sbjct: 171 YLPVCGMGC--FGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKREL 228 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAP 289 K+ G P +K R RIR++M RAT++ T + LRY++ E P Sbjct: 229 KEQQGTPELKGE-----RRRIRNEMASEPPLGVHRATLVYRG-TAVLIGLRYVRGETGVP 282 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 +LV + + A M + A + I ++ LA L + +AIP +++ +A+ Sbjct: 283 ILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPIAR 337 >gi|326794359|ref|YP_004312179.1| type III secretion protein, YscU/HrpY family [Marinomonas mediterranea MMB-1] gi|326545123|gb|ADZ90343.1| type III secretion protein, YscU/HrpY family [Marinomonas mediterranea MMB-1] Length = 368 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 86/332 (25%), Positives = 152/332 (45%), Gaps = 23/332 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KKI+D+ +G S++ + L +L G+ ++ + L+ Sbjct: 3 EKTEKATPKKIKDSRKKGQVGQSQDIHKLMILGVLLEVVLGMVDSGVRNLEKLTSIPLSM 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + V + L+++AS +V+ L + ++F + +Q ++ +K F Sbjct: 63 INQPFQYALQATV--VNCLTIAAS-MVMMALGIAVLFRLLGGWLQFGFLIAPEALKIDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTI-------ITISLTENYFTMLDFISANP 181 R++ +K ++S L SF+K I +G + I SL + T LD Sbjct: 120 RLNPFSQLKNMFSGKKLFELFNSFIKAITIGVVMYFILTPILPSLGKLALTDLDTTWRG- 178 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + F V + + +L+ IA++ D G + + LKMSK ++K E K G+P Sbjct: 179 ---IAELFLKVERACVGVLIVIASI---DFGMQKYFHFKSLKMSKDDVKQEYKNQEGDPH 232 Query: 242 IKNRQKSIARSRIRHKMMEATS------RATIIITNPTHYALALRYIQTENDAPVLVAKG 295 +K ++KS A + A S A ++ NPTH+A+AL Y E P ++ KG Sbjct: 233 LKGQRKSEAVRLATEEPSPAPSAKPELGEADTLVVNPTHFAVALYYRSEETPLPKILTKG 292 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 Q+ A + + A E IP+ LAR+L+K+ Sbjct: 293 QDQDALDLIEQAKEKGIPVIRFIWLARTLYKE 324 >gi|51103205|gb|AAT96346.1| HrcU [Pseudomonas viridiflava] Length = 361 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 165/353 (46%), Gaps = 18/353 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ KK++DA +G S++ LF I A L+ ++ G S L L Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLF--IFAALMEMILGLVDGGMSRLKALIALPL 60 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + R + + +LT ++P L + + +Q P+ + +K F Sbjct: 61 TELDRPFN--AALGEVLTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDF 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS---I 184 +R++ K+++S L N S K +++ ++ + L ++ + S Sbjct: 119 ERLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMA 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L F + + + +LL +A L + + +MS ++I+ E K+S G+P +K+ Sbjct: 179 LVELFTHLSRTCLGLLLVLAALDFALQKYFF---VKGQRMSHEDIRKEYKESEGDPHMKS 235 Query: 245 RQKSIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 +K++AR A +RA + ++ NPTH+A+AL Y + P ++ KG++ Sbjct: 236 HRKALAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAE 295 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A+++ + A E +P+ LAR+L+++ + IP +AVAQ +Y++ + Sbjct: 296 ARELIERAREAGVPVVRFVWLARTLYREN-VGQFIPRATLQAVAQ-VYRLLRE 346 >gi|330953285|gb|EGH53545.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 348 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 80/357 (22%), Positives = 164/357 (45%), Gaps = 36/357 (10%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + K++ + KK+ DA +G +++ L S ++ L L + Sbjct: 2 GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46 Query: 64 VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 VLL A A L D++ +++ LL H + +P + + + I + + Sbjct: 47 VLLPKARAQVEALIDLAALIYIEPFNDVWPRLLDHAEQIVIGITLPVVAVTVAAVILTNI 106 Query: 112 I-QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 + R V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L+G + + Sbjct: 107 VTMRGVVFSVEPIQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQAL 166 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKLKMSK 226 +++ S + +F+ V K L+ + L + + VL W + + ++KMS Sbjct: 167 QALMES-SRCGEGCIESSFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EMKMSH 222 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 E K E K G+P+IK ++ R +RA+++I + + + +RY++ E Sbjct: 223 SEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGET 282 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 P++V + + + A I ++ + SLA S+ K+ +P ++AVA Sbjct: 283 PVPIVVCRAAQHESAALLADAAPLGIALWPDASLAESIAKRSVAGDPVPENTFQAVA 339 >gi|285018286|ref|YP_003375997.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473504|emb|CBA16007.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 358 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 23/328 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK D+ +G + + + A L + I LF F I+S L L Sbjct: 3 EKTEKPTQKKRADSEKKGKSFKAADIGAMLLLIVGGVAIPFLFDFD-SIFS----LFKLF 57 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY------LIQRIPVLNL 120 SA Q K D+ + L A + G ++F++ + S+ LIQ L Sbjct: 58 GSAVQAK--DLPGPFAYVKTLGWVA----VKGTVIFIV--VCSFATTVPSLIQSRLTLAF 109 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++ F ++ G+K++++I + +K+ + II + I N+ L Sbjct: 110 DAIRFDFDALNPANGLKKLFNIRVAKDLVKTLLYIITTSAAVAI-FIHNHCRELFMTMRM 168 Query: 181 PHSILYHAFFTVRKVLIMILLFIA-TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P L + K L + ++ +A + VLD Y + LKM K E+K EIKQS GN Sbjct: 169 PEFALCSELGHLAKYLCLYMIGMAIPVLVLDCLTEYFLYIHGLKMEKYEVKQEIKQSQGN 228 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K+RQ+ ++R + K+ E +T ++ NPTH A+ + P++ + + Sbjct: 229 PEVKSRQRQLSREVLSEKVKENVKGSTFVLANPTHIAIGIYADFKVAPFPMVSVREVDAR 288 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 A+++ A + +P+ + LAR +F + Sbjct: 289 AREVIDYAMKCGVPVLRDIPLARRIFDR 316 >gi|206563886|ref|YP_002234649.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092677|gb|AAL59406.1| BcscU [Burkholderia cenocepacia] gi|28394258|gb|AAO31733.1| BcscU [Burkholderia cenocepacia] gi|198039926|emb|CAR55904.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 343 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 123/239 (51%), Gaps = 10/239 (4%) Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171 +Q V+ + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ Sbjct: 104 VQVGGVMAWSRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLD 163 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQ 227 + P SIL + K+L+++ + A + ++DI H++ K+KMS Sbjct: 164 PSVQSGFTRPVSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSID 219 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E++ E K+ G+P I+ +++ +AR + + A++++ +P A+AL Y Sbjct: 220 EVRREHKEDEGDPHIQAKRRQLAREVQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMGS 277 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ A+++ ++A + P LA++L++ P N I P ++ VAQL+ Sbjct: 278 LPWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFREVAQLL 336 >gi|71736693|ref|YP_274734.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557246|gb|AAZ36457.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 348 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 85/359 (23%), Positives = 160/359 (44%), Gaps = 36/359 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ + K++ S KK+ DA +G S+E IL C + + V + Sbjct: 1 MSESS--EEKSQPASDKKLRDARKKGQVAKSQELVSGMVILMCTLCISVLLPKARAQVEA 58 Query: 61 --DLHVLL-----ASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFGIGSYL 111 DL L+ A R L+ IV +T ++++ +++ ++ M G+ Sbjct: 59 LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIV--TMRGV---- 112 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITI 164 V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L VG Sbjct: 113 -----VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQ 167 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 +L E+ I + + +L FTV + L + + VL W + + ++KM Sbjct: 168 ALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKM 220 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 S E K E K G+P+IK ++ R RA+++I + + + +RY++ Sbjct: 221 SHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRG 280 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E P++V + + + + A I + + SLA + ++ +P ++AVA Sbjct: 281 ETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVA 339 >gi|330963711|gb|EGH63971.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 348 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 81/362 (22%), Positives = 163/362 (45%), Gaps = 44/362 (12%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + K++ + KK+ DA +G +++ L S ++ L L + Sbjct: 2 GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46 Query: 64 VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111 VLL A A L D++ +++ LL H A ++VI L + +G+ + Sbjct: 47 VLLPKARAQVEALIDLTALIYIEPFAEVWPRLLDH----AEQIVIGITLPVVAVTVGAVI 102 Query: 112 I-----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 + R V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L+G + Sbjct: 103 LTNIVTMRGVVFSVEPIQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVG 162 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKL 222 + +++ S + F+ V K L+ + L + + VL W + + ++ Sbjct: 163 RQALQALMES-SRCGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EM 218 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 KMS E K E K G+P+IK ++ R RA+++I + + + +RY+ Sbjct: 219 KMSHSEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYV 278 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + E P++V + + + A I + + SLA ++ ++ +P ++AV Sbjct: 279 RGETPVPIVVCRAAPHDSAALLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAV 338 Query: 343 AQ 344 A Sbjct: 339 AD 340 >gi|19749331|gb|AAL98701.1| Y4yO [Sinorhizobium fredii] Length = 345 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 155/353 (43%), Gaps = 33/353 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D + K+ + KK+ DA G P S + ++ A L YL + + Sbjct: 2 SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKCREA 59 Query: 64 VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQR 114 +LL KL++ + + LL L+L+ G LL +FG + + L R Sbjct: 60 LLLTD----KLQNLPFNLAVRQALVLLVELTLATV-----GPLLSALFGAVILAALLANR 110 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V +L +KP+F++++ + +KR+ S + V K+ K++++G ++ + TM+ Sbjct: 111 GFVFSLEPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV 170 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY-SKLKMSKQEIKDEI 233 + FT K LI I + L + +++M+K EIK E+ Sbjct: 171 YLPVCGMGC--FGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKREL 228 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAP 289 K+ G P +K R RIR++M RAT++ T + LRY++ E P Sbjct: 229 KEQQGTPELKGE-----RRRIRNEMASEPPLGVHRATLVYRG-TAVLIGLRYVRGETGVP 282 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 +LV + + A M + A + I ++ LA L + +AIP +++ + Sbjct: 283 ILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335 >gi|24251294|gb|AAN46413.1| HrcU [Xanthomonas oryzae pv. oryzae] Length = 277 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 10/246 (4%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65 + KTE P+ KK+ DA +G P+S + + + + L L S G Y V + L Sbjct: 3 EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFV-DHMRALTR 58 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 59 IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I Sbjct: 119 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDIS 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243 A+ T+ + + +L + D WS W +MSK E K E K+S G+P IK Sbjct: 179 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 236 Query: 244 NRQKSI 249 ++K I Sbjct: 237 GKRKGI 242 >gi|298487107|ref|ZP_07005157.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158350|gb|EFH99420.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 348 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 36/360 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ + K++ S KK+ DA +G S++ IL C + + V + Sbjct: 1 MSESS--EEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLPKARAQVEA 58 Query: 61 --DLHVLL-----ASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFGIGSYL 111 DL L+ A R L+ IV +T ++++ S +++ ++ M G+ Sbjct: 59 LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVSAVILTNIV--TMRGV---- 112 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITI 164 V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L VG Sbjct: 113 -----VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQ 167 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 +L E+ I + + +L FTV + L + + VL W + + ++KM Sbjct: 168 ALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKM 220 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 S E K E K G+P++K ++ R RA+++I + + + +RY++ Sbjct: 221 SHSEQKRERKDIDGDPMVKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRG 280 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E P++V + + + + A I + + SLA + ++ +P ++AVA Sbjct: 281 ETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVAD 340 >gi|257487953|ref|ZP_05641994.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320324520|gb|EFW80597.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328893|gb|EFW84892.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330985219|gb|EGH83322.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008642|gb|EGH88698.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 348 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 160/360 (44%), Gaps = 36/360 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ + K++ S KK+ DA +G S++ IL C + + V + Sbjct: 1 MSESS--EEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLPKARAQVEA 58 Query: 61 --DLHVLL-----ASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFGIGSYL 111 DL L+ A R L+ IV +T ++++ +++ ++ M G+ Sbjct: 59 LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIV--TMRGV---- 112 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITI 164 V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L VG Sbjct: 113 -----VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQ 167 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 +L E+ I + + +L FTV + L + + VL W + + ++KM Sbjct: 168 ALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKM 220 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 S E K E K G+P+IK ++ R RA+++I + + + +RY++ Sbjct: 221 SHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRG 280 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E P++V + + + + A I + + SLA + ++ +P ++AVA Sbjct: 281 ETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVAD 340 >gi|262360426|gb|ACY57147.1| type III secretion apparatus protein [Yersinia pestis D106004] Length = 215 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 2/199 (1%) Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI-ATLT 207 MKS +K+ ++ T+I L Y +++ F T+ L+ L+ + Sbjct: 1 MKSLLKVGVL-TLIFGYLLMQYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFS 59 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 ++D + + +LKMS E+K E K S G+P IK +++ + R+T Sbjct: 60 LMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQHEVQSGSFATNVRRSTA 119 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 ++ NPTH+A+ L Y E P+++ KG + A + +A + IP+ E +LAR+L + Sbjct: 120 VVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRD 179 Query: 328 VPINSAIPPVFYKAVAQLI 346 V IP F++ VA L+ Sbjct: 180 VACGDTIPEQFFEPVAALL 198 >gi|238755990|ref|ZP_04617315.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473] gi|238705779|gb|EEP98171.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473] Length = 386 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 32/338 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL--- 65 KTE P+ KK+ D+ +G + ++ + +++L C + FS S+T+ H+L Sbjct: 3 EKTEQPTDKKVRDSAKKGQSFKGKDL-IAAAVLVCGALAISGFS----SLTALGHLLQKV 57 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L S ++ K IS + L L L A VIP LL ++ G+ L+Q L +K Sbjct: 58 LLSPSEIK---ISAYLDELYRLFLYA---VIPVLLCCLLPGMLLSLLQSRFRLATEALKI 111 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F ++ G K+I+ I L +K+ + ++ GT I +T + + +L Sbjct: 112 NFSHLNPISGFKKIFGIRPLKELVKALLYLLAFGTSI--------YTFI-LLWRREVFML 162 Query: 186 YHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQ-----WYSKLKMSKQEIKDEIKQS 236 YHA T L +I +F+ + L + + LKM KQE+K E K++ Sbjct: 163 YHAELEEMITQWGRLCIIFIFVFLASSLILLLLDTLTELFLFIKDLKMEKQEVKKEYKEN 222 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +K I R + + + +++ NPTH AL + + + + P+++ K Q Sbjct: 223 EGDPQIKQARKEIHREILSEETKNGIKNSQVVMANPTHIALGIYFDPSVAELPLIIVKAQ 282 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 N A+ + A E IP+ + LAR L++ I S I Sbjct: 283 NAQARAVIAYAEEQGIPVVRDIPLARRLYRNNSIFSFI 320 >gi|16520047|ref|NP_444167.1| innermembrane protein RhcU; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2494576|sp|P55723|Y4YO_RHISN RecName: Full=Probable translocation protein y4yO gi|2182740|gb|AAB91954.1| innermembrane protein RhcU; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 345 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 33/353 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D + K+ + KK+ DA G P S + ++ A L YL + + Sbjct: 2 SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLGYL--WLRGSVIEDKCREA 59 Query: 64 VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQR 114 +LL KL++ + + LL L+L+ G LL +FG + + L R Sbjct: 60 LLLTD----KLQNLPFNLAVRQALVLLVELTLATV-----GPLLSALFGAVILAALLANR 110 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V +L +KP+F +++ + +KR+ S + V K+ K++++G ++ + TM+ Sbjct: 111 GFVFSLEPMKPNFDKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV 170 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY-SKLKMSKQEIKDEI 233 + FT K LI I + L + +++M+K EIK E+ Sbjct: 171 YLPVCGMGC--FGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKREL 228 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAP 289 K+ G P +K R RIR++M RAT++ T + LRY++ E P Sbjct: 229 KEQQGTPELKGE-----RRRIRNEMASEPPLGVHRATLVYRG-TAVLIGLRYVRGETGVP 282 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 +LV + + A M + A + I ++ LA L + +AIP +++ + Sbjct: 283 ILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335 >gi|268592372|ref|ZP_06126593.1| type III secretion system protein BsaZ [Providencia rettgeri DSM 1131] gi|291312158|gb|EFE52611.1| type III secretion system protein BsaZ [Providencia rettgeri DSM 1131] Length = 373 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 160/345 (46%), Gaps = 22/345 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI---YSVTSDLHVL 65 KTE P+ KKI D+ +G + S++ S+ A ++ + F G+ Y + + + Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKD-----SVAAIVLVVSAFVIEGVSSLYELGGLMRKI 57 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S T+ K++ + F LS+ V+P L + G L+Q L +K Sbjct: 58 FLSPTEIKIDALLW-QFFTIFLSI-----VLPVLFTCFLSGTIISLLQSRFRLASEAIKL 111 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI- 184 F +++ G K+I+S+N+L K +K IL + IS+ + I ++ Sbjct: 112 DFTKLNPIAGFKKIFSLNSL----KELIKAILYLIVFIISILVFFIVWRKDIFMLYRTMI 167 Query: 185 --LYHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + + ++ I++ L +A + +L D + + LKM KQE+K E K + G+P Sbjct: 168 NGMISQWVSLCVTFIVVFLAVALIIILVDAIAEFFLYIKNLKMEKQEVKKEYKDNEGDPH 227 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK+ ++ + + + ++ +T ++ NPTH AL + Y P L +K + AK Sbjct: 228 IKSARRGMHQELLSEEVKSNVRNSTFVMANPTHIALLIYYDSNIAPLPFLFSKSKGSQAK 287 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + K A + +P+ + LAR +++ +S I + V Q+I Sbjct: 288 AIIKYAEQQGVPVIRDIVLARQIWRSYKNDSFIDEKGLEDVMQII 332 >gi|227820507|ref|YP_002824478.1| translocation protein in type III secretion system, RhcU [Sinorhizobium fredii NGR234] gi|227339506|gb|ACP23725.1| translocation protein in type III secretion system, RhcU [Sinorhizobium fredii NGR234] Length = 345 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 82/354 (23%), Positives = 158/354 (44%), Gaps = 29/354 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSPGIYSVT 59 MSE + K+ S KKI DA +G + + S I+ L LF+ +P S+ Sbjct: 1 MSETS--EEKSLPASDKKIRDARRKGQ--VMHSPDMVSGIVVLFSTLFLFYVAP---SLQ 53 Query: 60 SDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + LL A+ +R D+ + + + +L + L I G+ + + + I + Sbjct: 54 VKIERLLDEASHIYERPFADVWYRLSTIAADALWTTVLPILGITIVAILAT-NVAITKGF 112 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V + + P F RV+ G+KRI S+ ++V+F K+ KI ++I+ + L Sbjct: 113 VFSAEPLAPDFNRVNPASGLKRIASLKSVVDFGKALFKI----AALSIAFAVVFHAGLGS 168 Query: 177 ISANP-------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 + +P H+ T+ + I + + + + W + + +++M++ E Sbjct: 169 LFQSPTCGFACLHATSLSMLKTITSIAIAAFVVMGAVDLFLQRWLFLR---EMRMTRSES 225 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K E K + G+P+I+ ++ +AR + + A ++I ++ +RY++ E P Sbjct: 226 KREHKDTEGDPLIRQERRKLAR--LLGTTKTGLAGAVLLIGEEGAVSVGIRYVRDETPVP 283 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 ++V + A MR A IP + LA L K PI + +P ++ VA Sbjct: 284 IVVCRAFGPAASSMRAQARSRTIPFMADAKLAAELGK-TPIGAPVPDRLFQEVA 336 >gi|289624372|ref|ZP_06457326.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646629|ref|ZP_06477972.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868644|gb|EGH03353.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 348 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 164/368 (44%), Gaps = 52/368 (14%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ + K++ S KK+ DA +G +++ L S ++ L L Sbjct: 1 MSESS--EEKSQPASDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC------------ 44 Query: 61 DLHVLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIG 108 + VLL A A L D++ +++ LL H A ++VI + + +G Sbjct: 45 -ISVLLPKARAQVEALIDLTALIYIEPFAEVWPRLLDH----AEQIVIGITVPVVAVTVG 99 Query: 109 SYLI-----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL------ 157 + ++ R V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L Sbjct: 100 AVILTNIVTMRGVVFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFY 159 Query: 158 -VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216 VG +L E+ I + + +L FTV + L + + VL W + Sbjct: 160 VVGRQALQALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFG 215 Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276 + ++KMS E K E K G+P+IK ++ R RA+++I + + Sbjct: 216 R---EMKMSHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLMIGDSGGWV 272 Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 + +RY++ E P++V + + + + A I + + SLA + ++ +P Sbjct: 273 VGVRYVRGETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPE 332 Query: 337 VFYKAVAQ 344 ++AVA Sbjct: 333 NTFQAVAD 340 >gi|256370976|ref|YP_003108800.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331] gi|256007560|gb|ACU53127.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331] Length = 390 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 75/124 (60%) Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E++DE+++ G+ +K R++ +AR +R M+ ++A +++ NPTH A+ALRY + Sbjct: 220 EVRDELREHEGDLAVKARRRRLAREFVRRAMLADVAQADVVVVNPTHVAVALRYDPRRDR 279 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG + +A +R+ A +PI E+P LAR ++ + IP + VA+L+ Sbjct: 280 APTVVAKGLDHLAMTIRERARAARVPIVEDPPLARVVYVASRVGEPIPASLFLVVARLLA 339 Query: 348 KIYH 351 +Y Sbjct: 340 FVYR 343 >gi|153003614|ref|YP_001377939.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5] gi|152027187|gb|ABS24955.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5] Length = 343 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 161/344 (46%), Gaps = 12/344 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 ++TE P+ K++ +A G+ RE +++ L+ L S+T +L LL + Sbjct: 4 DRTERPTPKRLREARRRGDVAQGRELGGAAALAGGLLALALTGP----SMTRELASLLRA 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + + LL ++ RL + + + + +Q V + P + Sbjct: 60 QLQAAAQPSADPAALLHAALVTVGRLALAPASAALAAAVLAGALQTGFVFAPGALSPRAE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 RV+ G++R+ S + + + K ++ + + L ++ + + L+ + Sbjct: 120 RVNPLRGLRRLLSPASALAVLLGLAKAAVLLGVAVVWLRSAAPSLAGLARLDARA-LWGS 178 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ ++ A L + D+ + + L+M++ E++ E K+ G+P + ++ Sbjct: 179 LPMLGGLVARLVAAYALLALGDVALARFRHRRALRMTRDEVRREHKEDEGDPAHRAERRR 238 Query: 249 IARSRIRHKMMEAT--SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R+ ++EA SRAT+++ NPTH A+ALR+ + DAP +VAKG A ++R Sbjct: 239 LHRA-----LLEAGPVSRATVVVVNPTHVAVALRHDRDGEDAPRVVAKGSGPAAARIRSA 293 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A +PI + LAR+L + + IP Y+A A ++ +Y Sbjct: 294 ARRAGVPIVRDVPLARALHRLAEVGDEIPEELYEAAAAVLAHLY 337 >gi|117928068|ref|YP_872619.1| type III secretion exporter [Acidothermus cellulolyticus 11B] gi|117648531|gb|ABK52633.1| type III secretion exporter [Acidothermus cellulolyticus 11B] Length = 391 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 36/361 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ +K+++A EG S E + +L I+L+ + T+ + Sbjct: 6 QKTEKPTQRKLKEARREGRVARSPEVGAWLGLLVG-IFLVHLT---MTRTTAAFRQAIDG 61 Query: 69 ATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 TQ + D + V +L S + P ++ +G+ + Q L+ + P + Sbjct: 62 LTQVIRTPDPNLAVHVLGTSLASGAVAAAPLAGAILLTALGASVAQGGLRLSAKALAPKW 121 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI------SANP 181 + ++ G KR++ K+ K L+ I+ Y TM + + P Sbjct: 122 QSLNPLNGWKRMFGPRGGWEAAKALAKTGLLALIL-------YDTMRGLVPLTTTGTVTP 174 Query: 182 HSILYHAFFTV-----RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + H + R + LL L LD + + + L+M+K E+K+E++ + Sbjct: 175 LQGVVHTAGSAVLRFARDAAVAGLL----LAFLDYAYQLRRHRASLRMTKHEVKEELRTT 230 Query: 237 YGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P I++ RQ ++ R R M+ + A +++ NPTH A+ALRY + AP +V Sbjct: 231 EGDPRIRSAIRVRQMALRRRR----MIRDVATADVVVVNPTHIAVALRYTPG-SGAPTIV 285 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG +A ++R A H +P+ E+ LAR+L++ + IP + AVA+++ ++ Sbjct: 286 AKGAGAVAARIRDEAIRHRVPLVEDIPLARALYRICDVGQEIPRELFVAVARVLAFVFSL 345 Query: 353 K 353 K Sbjct: 346 K 346 >gi|134294009|ref|YP_001117745.1| type III secretion exporter [Burkholderia vietnamiensis G4] gi|134137166|gb|ABO58280.1| type III secretion exporter [Burkholderia vietnamiensis G4] Length = 342 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 83/356 (23%), Positives = 167/356 (46%), Gaps = 40/356 (11%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + P++K++ +A +G+ P S E SS FF ++ L L A Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAET--VSSA---------FFVGVCVALAVGLGTLFA- 50 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRL--VIPG------------LLLFMMFGIGSYLIQR 114 +L+ + +VF + A+RL ++ G + ++ G+ + +Q Sbjct: 51 ----RLQALFRLVFDAAGAADPAARLAVLVDGAARDWALLSAQIVAAGLLAGLLAGFVQV 106 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V+ + + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ + Sbjct: 107 GGVMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLVATLGWLIVESLDPSV 166 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIK 230 P SIL + K+L+++ + A + ++DI H++ K+KMS E++ Sbjct: 167 QAGFTRPVSILA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNQKMKMSIDEVR 222 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E K+ G+P I +++ +AR + + A++++ +P A+AL Y P Sbjct: 223 REHKEDEGDPHIAAKRRQLAREAQFAALPDRIGYASVVVYSP-RVAVAL-YYGGIGSLPW 280 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++A+G+ A+++ ++A + P LA +L++ P N I ++ VAQL+ Sbjct: 281 VLARGEGEAAERIVRLARDALRPTLANVGLAHALYETTPENGTIQQQHFREVAQLL 336 >gi|213859844|ref|ZP_03385548.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 242 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 124/244 (50%), Gaps = 7/244 (2%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ D+KTEAP+ ++E A EG P SRE +S+L L+ + + G S+ L Sbjct: 3 EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58 Query: 64 VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L++ R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKN 244 +K Sbjct: 239 HVKG 242 >gi|82795281|gb|ABB91650.1| type III secretion protein HrcU [Pseudomonas syringae pv. tagetis] Length = 359 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 89/365 (24%), Positives = 166/365 (45%), Gaps = 50/365 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ L L+ LL S++ + LA Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLL---------AVSEVTLGLAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117 + +L+ + + F AS +I LL F + +G ++ R+ Sbjct: 47 ESVNRLQALLGLSFKGIDRPFMASVELIANEGFSVLLSFTLCSVGLAMLMRLISSWMQIG 106 Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 L++N + P F K+++S N++N + S +K + +G + + Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLVLSVLKALAIGATLYSQVKP 159 Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 T++ ++ + + +HA + + L +IL + + ++D + KL+MS + Sbjct: 160 ALGTLI-LLANSELTTYWHALVELFQHTLRVILGLLLVIAMVDFAMQKYFHAKKLRMSHE 218 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284 +IK E KQS G+P +K+ ++ ++ + + A A +++ NPTHYA+AL Y Sbjct: 219 DIKKEYKQSEGDPHVKDHRRQLSHEILNQEPSAAPKPVEEADMLLINPTHYAVALYYRSG 278 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E P++ KG++ A + + A + IP+ + LAR+L+K V IP VA Sbjct: 279 ETPLPMIHCKGEDADALALIERAKKAGIPVVQSIWLARTLYK-VKAGKYIPRTTLLTVAH 337 Query: 345 LIYKI 349 IYK+ Sbjct: 338 -IYKV 341 >gi|238898600|ref|YP_002924281.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466359|gb|ACQ68133.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 349 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 17/323 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++D+ +G + +++ + +LA + YL+ F S S+L L Sbjct: 4 NKTEKPTQKKLKDSAKKGQSFKTKDFIIACLMLAGVQYLISFAS------FSELMFLYKE 57 Query: 69 ATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 E DI + ++ LS+ ++ +P LLL + L+Q +L +K + Sbjct: 58 IISFNFEYDIHR--YTISVLSI-GFKIFLPILLLCIFCSALPSLLQTGFLLATKAIKLNL 114 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYFTMLDFISANPHS 183 ++ +G K+I+S+ + +KS ++ +GT ++ + T+ ++P+ Sbjct: 115 GALNPTKGFKKIFSLRTAKDAVKS---VLYLGTFFVAVLVVWNTKRGVLFQQLHGSSPYE 171 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I ++ +L L I + +LD Y LKM KQE+K E+K+ GNP IK Sbjct: 172 ITMVWGQLLQSILWTCLGCIVIILILDALAEYFLHIKDLKMDKQEVKREMKEQDGNPEIK 231 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R++ + + ++ + II NPTH A+ + P + N A + Sbjct: 232 GRRRELHMEILSEQIKSDIKNSQCIIANPTHIAVGIYVNPDTVMMPFISVLETNQKALAV 291 Query: 304 RKIAYEHNIPIFEEPSLARSLFK 326 R A + +P+ + SLAR+++K Sbjct: 292 RAYAKKVGVPVIQNISLARAIYK 314 >gi|218458074|ref|ZP_03498165.1| flagellar biosynthesis protein FlhB [Rhizobium etli Kim 5] Length = 71 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/61 (59%), Positives = 53/61 (86%) Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++ Sbjct: 1 MVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRV 60 Query: 350 Y 350 Y Sbjct: 61 Y 61 >gi|218988947|gb|ACL13610.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. salamae serovar Sofia] Length = 356 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 150/320 (46%), Gaps = 12/320 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++A Sbjct: 4 NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++ + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 62 NFEQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALRALLQAGFVLATEALKPNLS 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG K+++S+ + + +K+ + L ++ + + + F+ N + + Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFLQLNGNVVGIAV 173 Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + +++ L VL D Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFK 326 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313 >gi|183600583|ref|ZP_02962076.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827] gi|188019860|gb|EDU57900.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827] Length = 367 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/319 (22%), Positives = 150/319 (47%), Gaps = 10/319 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI+D+ +G + S+++ ++ + + + ++ + + +L S Sbjct: 3 EKTEKPTEKKIKDSAKKGQSFKSKDSVAALVLVVSVYVITG--TTSLFEIAGLMKRILLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 +I LL + ++ IP LL + G L+Q L +K F Sbjct: 61 PYN------ININILLREFIGAFLKIAIPVLLACFISGAILSLLQSRFRLATEAIKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ GIK+I+S+N+L +K+F+ +I+ + + + + ++Y Sbjct: 115 KLNPISGIKKIFSLNSLKELIKAFLYLIVFSISAMVFFILWRHDIFLLYRSTINGVIYQ- 173 Query: 189 FFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + +++ L +A +L D+ + + LKM KQE+K E K + G+P +K+ +K Sbjct: 174 WVGLCATFVVVFLAVALFIILVDVVTEFFLFIKGLKMEKQEVKKEYKDNEGDPHLKSARK 233 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + + + ++ +T ++ NPTH A+ + Y P L+ K L AK + + A Sbjct: 234 GLHQEILSEEVKSNVRNSTFVMANPTHIAMLIYYNNDIAPLPFLLFKSHGLQAKMIVRYA 293 Query: 308 YEHNIPIFEEPSLARSLFK 326 + +P+ + LAR +++ Sbjct: 294 EQQGVPVVRDIPLARKIWR 312 >gi|259908635|ref|YP_002648991.1| surface presentation of antigens protein SpaS [Erwinia pyrifoliae Ep1/96] gi|224964257|emb|CAX55764.1| Export protein for peptides using the type III secretion system [Erwinia pyrifoliae Ep1/96] gi|283478607|emb|CAY74523.1| Surface presentation of antigens protein SpaS [Erwinia pyrifoliae DSM 12163] Length = 363 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/331 (24%), Positives = 150/331 (45%), Gaps = 34/331 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK +D+ +G + ++ ++++ +LL+ S S +L + Sbjct: 3 QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLY--GMDFSSFISYFSKILLN 60 Query: 69 ATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++D + ++++ LS P + + + GI + L Q + +K +F Sbjct: 61 ENSVNIDDFMLQMMYIFLQLSF-------PLIGVCCLSGIIATLFQTRFTIATQALKLNF 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHS-IL 185 K ++ EGIK+I+S+ + F+KS +++ FT +FI+ + H+ ++ Sbjct: 114 KALNPVEGIKKIFSMRTVKEFIKSLCYLMVF-----------LFTCYNFITNDLKHALVI 162 Query: 186 YHAF----------FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +HA TV+ V I I + L D Y LKM K E+K E K+ Sbjct: 163 HHAGIGQLIVSLLSLTVKAVTIFIAYSLFVLCA-DFIMEYFLHVKDLKMDKHEVKQEHKE 221 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S GNP IK+ ++ + + + M A +++++ NPTH A+A+ + P + + Sbjct: 222 SDGNPQIKSARRRAHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRA 281 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 N AK A E IP+ L R L+K Sbjct: 282 SNFKAKAALLYAEEIGIPVVRNVLLTRRLYK 312 >gi|62181389|ref|YP_217806.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129022|gb|AAX66725.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 356 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 149/320 (46%), Gaps = 12/320 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++A Sbjct: 4 NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 62 NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG K+++S+ + + +K+ + L ++ + + + F N + + Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173 Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + +++ L VL D Y + +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFRTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFK 326 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313 >gi|51103002|gb|AAT96149.1| HrcU [Pseudomonas viridiflava] gi|51103057|gb|AAT96203.1| HrcU [Pseudomonas viridiflava] Length = 359 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 157/350 (44%), Gaps = 20/350 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMAVSEVTLGLADESVNRLQALLALSFKG 62 Query: 69 ATQRKLEDISHI----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + L + H+ + +L +L + L + L+ +G + +++N + Sbjct: 63 IDRSFLSAVEHLTSEGLSVLISFTLCSVGLAMLMRLISSWVQVGFLFAPKALKIDINKIN 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F K+++S N+ + S +K + + + + T++ I AN + Sbjct: 123 P-FSHA------KQMFSGQNISTLLLSILKAVAIAATLYSQVKPALGTLI--ILANSDLV 173 Query: 185 LY-HAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 Y HA + R +L +IL + + + D + KL+MS ++IK E KQS G+P + Sbjct: 174 TYWHALVELFRHILRVILGLLLAIAMADFALQKYFHAKKLRMSHEDIKKEYKQSEGDPHV 233 Query: 243 KNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ ++ + + A A +++ NPTHYA+AL Y E P++ KG++ Sbjct: 234 KGHRRQLSHEILNQEPTAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDED 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + A IP+ + LAR+L++ V + IP +AV IYK+ Sbjct: 294 ALDLIARAKRAGIPVVQSIWLARTLYR-VQVGKYIPRPTLQAVGH-IYKV 341 >gi|213620930|ref|ZP_03373713.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 123 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 54/81 (66%) Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA ++R+I EH +P Sbjct: 1 QRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPT 60 Query: 315 FEEPSLARSLFKQVPINSAIP 335 E P LAR+L++ S P Sbjct: 61 LEAPPLARALYRHAESVSKFP 81 >gi|310767465|gb|ADP12415.1| surface presentation of antigens protein SpaS [Erwinia sp. Ejp617] Length = 363 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 34/331 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK +D+ +G + ++ ++++ +LL+ S S +L + Sbjct: 3 QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLY--GMDFSSFISYYSKVLLN 60 Query: 69 ATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++D + ++++ LS P + + + GI + L Q + +K +F Sbjct: 61 ENSVNIDDFMLQMMYIFLQLSF-------PLIGVCCLSGIIATLFQTRFTIATQALKLNF 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHS-IL 185 K ++ EGIK+I+S+ + F+KS +++ FT +FI+ + H+ ++ Sbjct: 114 KALNPVEGIKKIFSMRTVKEFIKSLCYLMVF-----------LFTCYNFITNDLKHALVI 162 Query: 186 YHAF----------FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +HA TV+ V I I L D Y LKM K E+K E K+ Sbjct: 163 HHAGIGQLIVSLLSLTVKAVTIFIAYSFFVLCA-DFIMEYFLHVKDLKMDKHEVKQEHKE 221 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S GNP IK+ ++ + + + M A +++++ NPTH A+A+ + P + + Sbjct: 222 SDGNPQIKSARRRAHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRA 281 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 N AK A E IP+ L R L+K Sbjct: 282 SNFKAKAALLYAEEIGIPVVRNVLLTRRLYK 312 >gi|224584665|ref|YP_002638463.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469192|gb|ACN47022.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715873|gb|EFZ07444.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 356 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++A Sbjct: 4 NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 62 NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG K+++S+ + + +K+ + L ++ + + + F N + + Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173 Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + +++ L VL D Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFK 326 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313 >gi|66044456|ref|YP_234297.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae B728a] gi|63255163|gb|AAY36259.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae B728a] gi|330969107|gb|EGH69173.1| type III secretion protein HrcU [Pseudomonas syringae pv. aceris str. M302273PT] Length = 359 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 88/362 (24%), Positives = 170/362 (46%), Gaps = 38/362 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ L L+ L+ S++ + LA Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123 + +LE + + F S +AS +I LL F + +G ++ R+ + + + Sbjct: 47 ESVNRLEALLSLSFQGIDRSFAASVELIASEGLSVLLSFTLCSVGIAMLMRL-ISSWMQI 105 Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 F +L+ K+++S NL+N + S +K I +G + + + T++ Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLV 165 Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 ++ + + +HA + R +L +IL + + ++D + KL+MS ++IK E Sbjct: 166 -LLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPV 290 KQS G+P +K ++ +A+ + + A A +++ NPTHYA+AL Y E P+ Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPL 284 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + KG++ A + A + IP+ + L R+L++ + IP +AV IYK+ Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKVV 342 Query: 351 HK 352 + Sbjct: 343 RQ 344 >gi|85060041|ref|YP_455743.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] gi|84780561|dbj|BAE75338.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 7/240 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+EAP+ + E A EG P SRE +S+L L+ + G Y + L +LA Sbjct: 8 EKSEAPTQHRQEKAREEGQIPRSRE---LTSMLMLLVGCAMLWLDGAY-LARQLAAMLAQ 63 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF---MMFGIGSYLIQRIPVLNLNHVKP 125 I LT + S+ V+ + LF ++ +G+ ++ N + +K Sbjct: 64 GLHFDHGLIGKDRQSLTAAAPLLSQTVLALISLFAGLILVALGAPMLLGGITFNPSLIKF 123 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 K+V+ G+KR++S L K+ +K ++ G + L N+ ML + L Sbjct: 124 DIKKVNPLSGLKRMFSSQVLAELFKAILKAVVFGCVTGSFLWHNWPRMLHLVMEPAVPAL 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 A + + ++ I++ ++ + D+ W KL+M +Q+I+DE K G+P +KNR Sbjct: 184 GDAMWIITACMLFIIVGLSPIVGFDVFWQLWSHLKKLRMIRQDIRDEFKNQEGDPHVKNR 243 >gi|218509883|ref|ZP_03507761.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5] Length = 67 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 49/57 (85%) Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 KGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 1 KGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 57 >gi|289678002|ref|ZP_06498892.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae FF5] Length = 359 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 88/359 (24%), Positives = 169/359 (47%), Gaps = 38/359 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ L L+ L+ S++ + LA Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123 + +LE + + F S +AS +I LL F + +G ++ R+ + + + Sbjct: 47 ESVSRLEALLSLSFKGIDRSFAASVELIASEGFTVLLSFTLCSVGIAMLMRL-ISSWMQI 105 Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 F +L+ K+++S NL+N + S +K I +G + + + T++ Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLV 165 Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 ++ + + +HA + R +L +IL + + ++D + KL+MS ++IK E Sbjct: 166 -LLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPV 290 KQS G+P +K ++ +A+ + + A A +++ NPTHYA+AL Y E P+ Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPL 284 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + KG++ A + A + IP+ + L R+L++ + IP +AV IYK+ Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 341 >gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] Length = 539 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 141/282 (50%), Gaps = 15/282 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A ++KTE + K+++A +G S+E L ++L + + F I ++ + + Sbjct: 265 ASEDKTEEATPHKLQEARKKGQVAKSKEVGLAFTLLMSTLVISFLGQYAIENLQNVMTAF 324 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L +L + ++ ++ + + ++ +++P ++ M+ GI + IQ + +KP Sbjct: 325 LKDFMGMEL-NYKNLFYISLTIVMRSALIILPLIIPIMIMGIFANFIQTGFIFTKETLKP 383 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-------IS 178 K+++ G K+I+S LV +K + +VG + L +NY +L+ + Sbjct: 384 DIKKLNPVNGFKKIFSTRTLVELVKDLALVNVVGYVGYRFLKKNYIEILNLNNLRFPIML 443 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 I AFF + V+I FIA V D + ++ +KMSKQE+K+E KQ G Sbjct: 444 KAFKGIAVKAFFNITLVMI----FIA---VGDFIFQKKKYKKDMKMSKQEVKEEFKQQEG 496 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 +P IK + + R +MM++ AT++ITNPTH A +L+ Sbjct: 497 DPQIKGKIRQKQREMAMRRMMQSVPDATVVITNPTHIASSLK 538 >gi|16761664|ref|NP_457281.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143148|ref|NP_806490.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414839|ref|YP_151914.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168820416|ref|ZP_02832416.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197247812|ref|YP_002147784.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197363767|ref|YP_002143404.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213052431|ref|ZP_03345309.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425711|ref|ZP_03358461.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580230|ref|ZP_03362056.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609307|ref|ZP_03369133.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649913|ref|ZP_03379966.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853013|ref|ZP_03382545.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238909654|ref|ZP_04653491.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25322234|pir||AC0851 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503965|emb|CAD05994.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138781|gb|AAO70350.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129096|gb|AAV78602.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095244|emb|CAR60795.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211515|gb|ACH48912.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205342919|gb|EDZ29683.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087292|emb|CBY97057.1| Surface presentation of antigens protein spaS [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 356 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++A Sbjct: 4 NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 62 NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG K+++S+ + + +K+ + L ++ + + + F N + + Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173 Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + +++ L VL D Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFK 326 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313 >gi|16766193|ref|NP_461808.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615799|ref|YP_001589764.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167993122|ref|ZP_02574217.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230957|ref|ZP_02656015.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235927|ref|ZP_02660985.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242624|ref|ZP_02667556.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261990|ref|ZP_02683963.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463978|ref|ZP_02697895.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444022|ref|YP_002042128.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451625|ref|YP_002046847.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468977|ref|ZP_03074961.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735131|ref|YP_002115839.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262027|ref|ZP_03162101.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242012|ref|YP_002216856.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388611|ref|ZP_03215223.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928232|ref|ZP_03219432.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353830|ref|YP_002227631.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858149|ref|YP_002244800.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|730801|sp|P40702|SPAS_SALTY RecName: Full=Surface presentation of antigens protein spaS gi|404293|emb|CAA51927.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421435|gb|AAL21767.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365163|gb|ABX68931.1| hypothetical protein SPAB_03590 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402685|gb|ACF62907.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409929|gb|ACF70148.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455341|gb|EDX44180.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710633|gb|ACF89854.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633151|gb|EDX51565.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197240282|gb|EDY22902.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290674|gb|EDY30028.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936528|gb|ACH73861.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605709|gb|EDZ04254.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322554|gb|EDZ07751.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273611|emb|CAR38598.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205328759|gb|EDZ15523.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334405|gb|EDZ21169.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338041|gb|EDZ24805.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349087|gb|EDZ35718.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709952|emb|CAR34306.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248023|emb|CBG25856.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995015|gb|ACY89900.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159446|emb|CBW18964.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913905|dbj|BAJ37879.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223436|gb|EFX48502.1| Surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614295|gb|EFY11226.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621641|gb|EFY18494.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624502|gb|EFY21335.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628833|gb|EFY25616.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633440|gb|EFY30182.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635984|gb|EFY32692.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639692|gb|EFY36377.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646875|gb|EFY43378.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650643|gb|EFY47048.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654745|gb|EFY51064.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658965|gb|EFY55218.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664468|gb|EFY60662.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668283|gb|EFY64440.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673737|gb|EFY69838.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677798|gb|EFY73861.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681372|gb|EFY77404.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683774|gb|EFY79784.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131239|gb|ADX18669.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193837|gb|EFZ79040.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200307|gb|EFZ85389.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203190|gb|EFZ88219.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205563|gb|EFZ90528.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210074|gb|EFZ94977.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216377|gb|EGA01104.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221124|gb|EGA05555.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226946|gb|EGA11128.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230770|gb|EGA14888.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234879|gb|EGA18965.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238918|gb|EGA22968.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241618|gb|EGA25649.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248235|gb|EGA32171.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251181|gb|EGA35054.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256065|gb|EGA39803.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263200|gb|EGA46738.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264297|gb|EGA47803.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271123|gb|EGA54551.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624618|gb|EGE30963.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628939|gb|EGE35282.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989759|gb|AEF08742.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 356 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++A Sbjct: 4 NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 62 NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG K+++S+ + + +K+ + L ++ + + + F N + + Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIAV 173 Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + +++ L VL D Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFK 326 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313 >gi|330950827|gb|EGH51087.1| type III secretion protein HrcU [Pseudomonas syringae Cit 7] Length = 359 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 89/359 (24%), Positives = 168/359 (46%), Gaps = 38/359 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ L L+ L+ S++ + LA Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123 + +LE + + F S +AS +I LL F + +G ++ R+ + + + Sbjct: 47 ESVNRLEALLSMSFQGIDRSFAASVELIASEGFSVLLSFTLCSVGIAMLMRL-ISSWMQI 105 Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 F +L+ K+++S NL+N + S +K I +G + + + T L Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGT-L 164 Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 ++ + + +HA + R +L +IL + + ++D + KL+MS ++IK E Sbjct: 165 AVLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPV 290 KQS G+P +K ++ +A+ + + A A +++ NPTHYA+AL Y E P+ Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPL 284 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + KG++ A + A + IP+ + L R+L++ + IP +AV IYK+ Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 341 >gi|167550264|ref|ZP_02344021.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324806|gb|EDZ12645.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 356 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++A Sbjct: 4 NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 62 NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG K+++S+ + + +K+ + L ++ + + + F N + + Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNIVDIAV 173 Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + +++ L VL D Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFK 326 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313 >gi|818894|gb|AAB05078.1| HrpY [Pseudomonas syringae pv. syringae] gi|148562543|gb|ABQ88362.1| HrcU [Pseudomonas syringae pv. syringae] Length = 359 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 89/359 (24%), Positives = 168/359 (46%), Gaps = 38/359 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ L L+ L+ S++ + LA Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123 + +LE + + F S +AS +I LL F + +G ++ R+ + + + Sbjct: 47 ESVNRLEALLSLSFQGIDRSFAASVELIASEGFSVLLSFTLCSVGIAMLMRL-ISSWMQI 105 Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 F +L+ K+++S NL+N + S +K I +G + + + T L Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGT-L 164 Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 ++ + + +HA + R +L +IL + + ++D + KL+MS ++IK E Sbjct: 165 AVLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEAT---SRATIIITNPTHYALALRYIQTENDAPV 290 KQS G+P +K ++ +A+ + + A A +++ NPTHYA+AL Y E P+ Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPLEDADMLLVNPTHYAVALYYRPGETPLPL 284 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + KG++ A + A + IP+ + L R+L++ + IP +AV IYK+ Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 341 >gi|293412209|ref|ZP_06654932.1| conserved hypothetical protein [Escherichia coli B354] gi|291468980|gb|EFF11471.1| conserved hypothetical protein [Escherichia coli B354] Length = 337 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 113/239 (47%) Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + + +IP LL+ M I Q L +K F ++ G+KRI+ + + Sbjct: 40 MGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVK 99 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 F+K+ + II I + + + + + + S+L + +++ L + + Sbjct: 100 EFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIV 159 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 + D Y + +KM KQE+K E K+ GNP IK++++ + + ++ S + Sbjct: 160 LIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERHQEILSEQLKSDVSNSR 219 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 ++I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++ Sbjct: 220 LMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIY 278 >gi|237799998|ref|ZP_04588459.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022853|gb|EGI02910.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae str. 1_6] Length = 359 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 11/219 (5%) Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV-RKV 195 K+++S N+ N + S +K + ++ + +++ +++ + +HA + R + Sbjct: 128 KQMFSGQNITNLLMSILKASAIAAVLYTQVKPELGSLVLLANSDLQTY-WHALLELFRHI 186 Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255 L +IL + + + D + KL+MS ++IK E KQS G+P +K ++ ++ + Sbjct: 187 LRVILGLLLVIAMADFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLSHEILN 246 Query: 256 HKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312 + A A +++ NPTHYA+AL Y E P++ KG++ A + + A + I Sbjct: 247 QEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDDEALALIERAKKAGI 306 Query: 313 PIFEEPSLARSLFKQVPINSAIPPVF------YKAVAQL 345 P+ + LAR+L+K P P YK V QL Sbjct: 307 PVVQNIWLARTLYKVKPGKYIPRPTLLIVAHIYKVVRQL 345 >gi|302185355|ref|ZP_07262028.1| type III secretion component protein HrcU [Pseudomonas syringae pv. syringae 642] gi|256259405|gb|ACU65042.1| HrcU [Pseudomonas syringae pv. syringae] Length = 362 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 89/367 (24%), Positives = 167/367 (45%), Gaps = 61/367 (16%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + + K+I DA G S++ L L+ L+ V S++ + +A Sbjct: 3 EKNQDATPKQIRDARKRGQVAQSQD-------LPKLLILV---------VVSEITLGMAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSL----SASRLVIPGLLL---FMMFGIGSYLIQRI------ 115 + KL+ S I +T + + +V G+ L F + +G ++ R+ Sbjct: 47 VSMEKLQ--SLIKLSMTRMDQPFLRTVGEVVTQGVWLVAAFAVLSVGVAMLMRLLGSWMQ 104 Query: 116 --PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 + +KPS ++++ +K+++++ +L + +K ++ ++ + + T+ Sbjct: 105 FGVLFAPEALKPSMEKLNPFSHLKQMFTLRSLTTSLSGIIKAAIIAVVMWMIVEPALGTL 164 Query: 174 LDFISANPHSIL---YHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 + + HS L +HA F + +V ILL +A V D + +L+MS Sbjct: 165 VSLV----HSDLVTFWHALSKLFHQILRVTCGILLVLA---VADFAIQKYFHAKQLRMSM 217 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRA--------TIIITNPTHYALA 278 ++IK E K S GNP IK ++ +A H+++ +A ++I NPTHYA+A Sbjct: 218 EDIKQEYKNSEGNPEIKGHRRQLA-----HELLNQAPKAPPKPVKDADVLIVNPTHYAVA 272 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 L Y E P + K + A + + A IP+ + LAR+L++ VP + IP Sbjct: 273 LYYRPGETALPRIHCKNIDAGALALIEEAKRERIPVVQCIWLARTLYR-VPQDRFIPRDT 331 Query: 339 YKAVAQL 345 +AVAQ+ Sbjct: 332 LQAVAQI 338 >gi|297621085|ref|YP_003709222.1| type III secretion inner membrane protein SctU [Waddlia chondrophila WSU 86-1044] gi|297376386|gb|ADI38216.1| type III secretion inner membrane protein SctU [Waddlia chondrophila WSU 86-1044] Length = 375 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/345 (23%), Positives = 159/345 (46%), Gaps = 15/345 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE + KK+ DA +G S++ A F + +A ++ L F + L Sbjct: 3 EKTEKATPKKLRDAKKKGQVAKSQDFPSAFTFVTSIALILGLSGFMFSKVGGFIESTFKL 62 Query: 66 LASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++ ++IS ++ + L+ VIP + + G+ + PV K Sbjct: 63 VSH------DEISVVIPTMFREALLTIFSTVIPVMAAVALMGVVVNFLSVGPVWATEVFK 116 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN--YFTMLDFISANPH 182 K+ + +K + I LV +KS +KI + +I + ++ T + Sbjct: 117 FDIKKFDPIQNLKSKFKIKTLVELIKSCLKIGIAAWLIYGVMYKSLPVLTQAATMPIESS 176 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 +++ AF + +V+I + +F + VLD + + + ++ M K E+K E K + G+P I Sbjct: 177 LLIFKAF--LMEVVIKVGIFFLVVAVLDFAYQKYNFGKEMMMEKFEVKQEYKNTEGDPQI 234 Query: 243 KNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 K+++K A+ A +A +ITNP A+A+ Y + + AP ++ G+ ++A+ Sbjct: 235 KSKRKQTAQEIAYSDGPAAAVQKAAAVITNPVQLAIAVGYNREIDAAPYILVMGEGILAE 294 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++ A + +PI LA L+ + I IP Y+A+A+++ Sbjct: 295 RIVHYANKSEVPIVRNIELAHKLWLEGEIFEYIPEDTYEAMAEIL 339 >gi|254255060|ref|ZP_04948377.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124899705|gb|EAY71548.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 392 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/323 (21%), Positives = 156/323 (48%), Gaps = 19/323 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS----DLHV 64 +KTE + KK D+ G +R+A ++AC++ G++ V+ ++ Sbjct: 5 SKTEEATPKKRRDSAERGQILKARDA-----VVACVMLC------GVFVVSKMSLHEIGA 53 Query: 65 LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 ++ Q + D S V L ++ ++V P LL+ ++ L+Q VL + Sbjct: 54 VMIDMMQNGFDVDTSSYV---KSLLVACLKVVAPVLLVCILAAAVPSLMQSKFVLATKAL 110 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K +F+ ++ G K+I+++ + +F+KS + +++ ++I N +L ++ H Sbjct: 111 KINFEALNPVRGFKKIFNLRTVKDFVKSLLYLVVFSVAVSIVWVRNKEKLLAQFYSDLHG 170 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 ++ + +++ L + +LD+ +L+M+K+E+K E K++ G+P IK Sbjct: 171 VVGLWKDLMVDLVLTCLGCALVILILDVLVEMLIHRKELRMAKEEVKRERKENEGSPEIK 230 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R+K + + + + + +II NPTH A+ + + + P++ +N A + Sbjct: 231 GRRKEMHQELLSEQDKHDIQNSKMIIANPTHVAVGIYFNPSHLPYPLVSISERNQRALAV 290 Query: 304 RKIAYEHNIPIFEEPSLARSLFK 326 R+ A + +P+ + LAR ++K Sbjct: 291 RRYAEKIGVPVIVDVPLARQIYK 313 >gi|330895854|gb|EGH28140.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica str. M301072PT] Length = 224 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 108/209 (51%), Gaps = 7/209 (3%) Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFI 203 ++N + S +K I +G + + + T++ ++ + + +HA + R +L +IL + Sbjct: 1 MLNLLLSVLKAIAIGATLYVQVKPVLGTLV-LLANSDLTTYWHALVELFRHILRVILGLL 59 Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA-- 261 + ++D + KL+MS ++IK E KQS G+P +K ++ +A+ + + A Sbjct: 60 LAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEILNQEPSAAPK 119 Query: 262 -TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 A +++ NPTHYA+AL Y E P++ KG++ A + A + IP+ + L Sbjct: 120 PVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWL 179 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 R+L++ + IP +AV IYK+ Sbjct: 180 TRTLYRS-KVGKYIPRPTLQAVGH-IYKV 206 >gi|28628135|gb|AAO34619.1| HrcU [Erwinia chrysanthemi] Length = 347 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/255 (22%), Positives = 124/255 (48%), Gaps = 7/255 (2%) Query: 102 FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161 +M +G + IQ P+ + +K F R++ IK+++++ + + + + +K + + Sbjct: 80 LLMRVVGGW-IQYGPLFAVEALKLDFNRLNPINQIKQMFTMRKITDMLTNLLKATTIWVV 138 Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 + + +++ + ++ ++ V L + L V D G + + + Sbjct: 139 FWLVVIPQLEWLVELAYGDLNAFWKGVENVLKSVSCTTLSALLALGVFDFGLQKYYFLKQ 198 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH----KMMEATSRATIIITNPTHYAL 277 +M ++I++E K S G+P +K +KS+A+ + + A +++ NPT YA+ Sbjct: 199 QRMIHEDIRNEYKNSEGDPHMKGHRKSVAQEILNEPASPRAKPKVEDADLLLVNPTDYAV 258 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL Y + P ++ KG++ AK + A++ +P+ LAR+L++ VP IP Sbjct: 259 ALFYRPGKTPLPRILLKGEDDQAKALIARAHQAGVPVIRFIWLARTLYR-VPEGHYIPRD 317 Query: 338 FYKAVAQLIYKIYHK 352 + VAQ +YK+ + Sbjct: 318 TLQPVAQ-VYKVLRQ 331 >gi|28868600|ref|NP_791219.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato str. DC3000] gi|213968267|ref|ZP_03396411.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato T1] gi|301381804|ref|ZP_07230222.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato Max13] gi|302061995|ref|ZP_07253536.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato K40] gi|302135077|ref|ZP_07261067.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851838|gb|AAO54914.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato str. DC3000] gi|213926905|gb|EEB60456.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato T1] gi|330963058|gb|EGH63318.1| type III secretion protein HrcU [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015106|gb|EGH95162.1| type III secretion protein HrcU [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 359 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 167/358 (46%), Gaps = 36/358 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ L L+ LL S++ + LA+ Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLL---------AVSEVTLGLAN 46 Query: 69 ATQRKLEDISHIVF------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP------ 116 + +L+ + + F ++ + L AS + +L F + +G ++ R+ Sbjct: 47 ESVNRLQALLALTFKGIERPFMSAVELIASE-GLSVVLSFTLCSVGLAMLMRLISSWVQI 105 Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + +K K++ K+++S N++N + S +K + +G + + T++ Sbjct: 106 GFLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLI 165 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +++ + L+ + VL +IL + + ++D + KL+MS ++IK E K Sbjct: 166 LLANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYK 225 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVL 291 QS G+P +K ++ +A + + A A +++ NPTHYA+AL Y E P++ Sbjct: 226 QSEGDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMI 285 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 KG++ A + A + IP+ + LAR+L+K V + IP AV IYK+ Sbjct: 286 HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGH-IYKV 341 >gi|330872921|gb|EGH07070.1| type III secretion protein HrcU [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 359 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 167/358 (46%), Gaps = 36/358 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ L L+ LL S++ + LA+ Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLL---------AVSEVTLGLAN 46 Query: 69 ATQRKLEDISHIVF------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP------ 116 + +L+ + + F ++ + L AS + +L F + +G ++ R+ Sbjct: 47 ESVNRLQALLALTFKGIERPFMSAVELIASE-GLSVVLSFTLCSVGLAMLMRLISSWVQI 105 Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + +K K++ K+++S N++N + S +K + +G + + T++ Sbjct: 106 GFLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLI 165 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 +++ + L+ + VL +IL + + ++D + KL+MS ++IK E K Sbjct: 166 LLANSDLATYLHALIELFQHVLRVILGLLLVIALVDFAMQKYFHAKKLRMSHEDIKKEYK 225 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVL 291 QS G+P +K ++ +A + + A A +++ NPTHYA+AL Y E P++ Sbjct: 226 QSEGDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMI 285 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 KG++ A + A + IP+ + LAR+L+K V + IP AV IYK+ Sbjct: 286 HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGH-IYKV 341 >gi|293406351|ref|ZP_06650277.1| antigen surface presentation protein SpaS [Escherichia coli FVEC1412] gi|291426357|gb|EFE99389.1| antigen surface presentation protein SpaS [Escherichia coli FVEC1412] Length = 337 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 113/239 (47%) Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + + +IP LL+ M I Q L +K F ++ G+KRI+ + + Sbjct: 40 MGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVK 99 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 F+K+ + II I + + + + + + S+L + +++ L + + Sbjct: 100 EFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIV 159 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 + D Y + +KM KQE+K E K+ G+P IK++++ + + ++ S + Sbjct: 160 LIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGSPEIKSKRRERHQEILSEQLKSDVSNSR 219 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 ++I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++ Sbjct: 220 LMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIY 278 >gi|71737972|ref|YP_273541.1| type III secretion component protein HrcU [Pseudomonas syringae pv. phaseolicola 1448A] gi|289623686|ref|ZP_06456640.1| type III secretion component protein HrcU [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647640|ref|ZP_06478983.1| type III secretion component protein HrcU [Pseudomonas syringae pv. aesculi str. 2250] gi|42562005|gb|AAS20447.1| HrcU [Pseudomonas syringae pv. phaseolicola] gi|71558525|gb|AAZ37736.1| type III secretion component protein HrcU [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322958|gb|EFW79048.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. B076] gi|320329919|gb|EFW85907.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] gi|330871290|gb|EGH05999.1| type III secretion component protein HrcU [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330984961|gb|EGH83064.1| type III secretion component protein HrcU [Pseudomonas syringae pv. lachrymans str. M301315] Length = 359 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 50/365 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ L L+ L+ V S++ + LA Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VVSEITLGLAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117 + +L+ + + F S +AS +I LL F + +G ++ R+ Sbjct: 47 DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106 Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 L++N + P F K+++S N++N + S +K + +G + + + Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159 Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 ++ ++ + + +HA + R +L +IL + + ++D + KL+MS + Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284 +IK E KQS G+P +K ++ ++ + + A A +++ NPTHYA+AL Y Sbjct: 219 DIKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPG 278 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E P++ KG++ A + A + IP+ + L R+L++ + IP +AV Sbjct: 279 ETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH 337 Query: 345 LIYKI 349 IYK+ Sbjct: 338 -IYKV 341 >gi|185177891|pdb|3BZR|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d Mutation, Space Group P 41 21 2 gi|185177892|pdb|3BZS|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d Mutation, Space Group P 21 21 21 Length = 137 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 70/123 (56%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSK E+K E K + GNP IK ++ + + ++T+I+ +PTH A+ L Y Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKL 66 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126 Query: 344 QLI 346 QLI Sbjct: 127 QLI 129 >gi|115358968|ref|YP_776106.1| type III secretion exporter [Burkholderia ambifaria AMMD] gi|115284256|gb|ABI89772.1| type III secretion exporter [Burkholderia ambifaria AMMD] Length = 343 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/362 (21%), Positives = 157/362 (43%), Gaps = 52/362 (14%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52 K + P++K++ DA +G+ P S E ++ F + L ++ L F + Sbjct: 3 EKDQKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 G ++ L L+ A + + IV L A + + G Sbjct: 63 AGAADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGG-------------- 108 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 V+ + + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ Sbjct: 109 ----VMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDP 164 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228 + P SIL + K+L+++ + A + ++DI H++ K+KMS +E Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEE 220 Query: 229 IKDEIKQSYGNPIIKNRQKSIAR----SRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 ++ E K+ G+P I+ +++ +AR S ++ ++ A+ Y + + Sbjct: 221 VRREHKEDEGDPHIEAKRRQLAREAQFSSLQDRIGFASVVVYSSSVAVALYYGGIGTL-- 278 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 P ++A+G+ A+++ ++A + P LA +L+ P I ++ VAQ Sbjct: 279 ----PWVLARGEGEAAERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQ 334 Query: 345 LI 346 L+ Sbjct: 335 LL 336 >gi|257487237|ref|ZP_05641278.1| type III secretion component protein HrcU [Pseudomonas syringae pv. tabaci ATCC 11528] gi|238577784|gb|ACR46695.1| HrcU [Pseudomonas syringae pv. tabaci] gi|331009149|gb|EGH89205.1| type III secretion component protein HrcU [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 359 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 50/365 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ L L+ L+ V S++ + LA Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VVSEITLGLAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117 + +L+ + + F S +AS +I LL F + +G ++ R+ Sbjct: 47 DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106 Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 L++N + P F K+++S N++N + S +K + +G + + + Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159 Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 ++ ++ + + +HA + R +L +IL + + ++D + KL+MS + Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILHVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284 +IK E KQS G+P +K ++ ++ + + A A +++ NPTHYA+AL Y Sbjct: 219 DIKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPHPVEEADMLLVNPTHYAVALYYRPG 278 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E P++ KG++ A + A + IP+ + L R+L++ + IP +AV Sbjct: 279 ETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH 337 Query: 345 LIYKI 349 IYK+ Sbjct: 338 -IYKV 341 >gi|330957485|gb|EGH57745.1| type III secretion protein HrcU [Pseudomonas syringae pv. maculicola str. ES4326] Length = 359 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 83/358 (23%), Positives = 165/358 (46%), Gaps = 36/358 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ L L+ L+ S++ + LA Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLSLAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIP------- 116 + +LE + + F + +AS ++ LL F + +G ++ R+ Sbjct: 47 DSVNRLEALLTLSFQGIDRTFAASVELVASEGLSVLLSFTLCSVGIAMLMRLIGSWVQIG 106 Query: 117 -VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 + +K +++ K+++S NL+N + S +K + +G + + ++ Sbjct: 107 FLFAPKALKVDINKINPFSHAKQMFSGQNLLNLLLSILKAVAIGATLYTQVKPALGALI- 165 Query: 176 FISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 ++ + + +HA + R +L +IL + + ++D + KL+MS ++IK E K Sbjct: 166 LLANSDLTTYWHALVDLFRHILRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYK 225 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVL 291 QS G+P +K ++ +A + + A A +++ NPTHYA+AL Y E P++ Sbjct: 226 QSEGDPHVKGHRRQLAHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRAGETPLPLI 285 Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 KG++ A + A + IP+ + L R+L++ + IP +AV IYK+ Sbjct: 286 HCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH-IYKV 341 >gi|260775664|ref|ZP_05884560.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC BAA-450] gi|260608080|gb|EEX34249.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC BAA-450] Length = 352 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 64/351 (18%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREAS-------LFSSILACLIYLLFFFSPGIYSVTSD 61 KTE P+ KKI+D+ G + + F ++AC +L+ +Y + Sbjct: 3 EKTEKPTQKKIQDSRKRGQVAQTPDIPKLLACVLTFEVLVACSEWLMAELKTLVYMPITL 62 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPVLNL 120 + LE H++FL +VIP + G G + P Sbjct: 63 FNQPFEHGFLSVLEVAKHVLFLFI-------LIVIPVSFFAALIGRWGQFGFLFAP---- 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K F +++ +K+++S L + + K IL+ + I L + Sbjct: 112 EALKLDFNKLNPFSQLKQLFSGQKLTEVLNNIFKSILIFVVFYILLND------------ 159 Query: 181 PHSILYHAFFTV------RKVLIMILLFIATLTV----------LDIGWSYHQWYSKLKM 224 L HA F + R L I LFI V LD +LKM Sbjct: 160 ----LAHAVFKLPNLPLDRMWLAAIDLFIYVARVCLLLLLAPAILDFALKKFFHLKQLKM 215 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT--------IIITNPTHYA 276 KQE+K E K S G+P +K++ R ++ +++E + + T +++ NPTH+A Sbjct: 216 DKQEVKQEFKDSEGDPFVKSQ-----RRQLGMELVEGSPQTTNASMDEMDMLVVNPTHFA 270 Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 + L Y PV+ AKG++ A ++ + A +P+ LAR+L++Q Sbjct: 271 VGLHYNPGVTPLPVVGAKGKDREALELIQQADHSGVPVIRYVWLARTLYQQ 321 >gi|171322217|ref|ZP_02911064.1| type III secretion exporter [Burkholderia ambifaria MEX-5] gi|171092454|gb|EDT37799.1| type III secretion exporter [Burkholderia ambifaria MEX-5] Length = 343 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/359 (21%), Positives = 154/359 (42%), Gaps = 46/359 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52 K + P++K++ DA +G+ P S E ++ F + L ++ L F + Sbjct: 3 EKDQKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 G ++ L L+ A + + IV L A + + G Sbjct: 63 AGAADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGG-------------- 108 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 V+ + + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ Sbjct: 109 ----VMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDP 164 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228 + P SIL + K+L+++ + A + ++DI H++ K+KMS +E Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEE 220 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR-YIQTEND 287 ++ E K+ G+P I+ +++ +AR + R ++A+ Y Sbjct: 221 VRREHKEDEGDPHIEAKRRQLARE---AQFSSLPDRIGFASVVVYSSSVAVALYYGGVGT 277 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P ++A+G+ A+++ ++A + P LA +L+ P I ++ VAQL+ Sbjct: 278 LPWVLARGEGEAAERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLL 336 >gi|307947535|ref|ZP_07662868.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4] gi|307769353|gb|EFO28581.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4] Length = 350 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/358 (21%), Positives = 159/358 (44%), Gaps = 22/358 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D + K + + A +G S++ L L +++ + + ++ Sbjct: 1 MSGGDTSEEKNLPATEHTLRKAREKGQVAQSKDFVTMLITLGGLFFVIMAWPSFVRMFSN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR--IPVL 118 L L Q +LED +F+++ L S +IP +++ ++ I + ++ + IP Sbjct: 61 SLDFAL-RGFQMELEDSYRPMFVVSILETLYS--LIPLVVILVLTAILANILHKKGIP-F 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI----ILVGTIITISLTENYFTML 174 +++ + P FK+++ G K+++ + F S +K+ ++ G I ++L Sbjct: 117 SMHPIVPDFKKINPASGFKKMFGARGMTEFSVSLLKVLIWFVVAGMFIWLALPA------ 170 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIK 230 I +P +LI I+L A L VLD+ + + KM++ ++K Sbjct: 171 --ILNSPICEFPCTTAVTNDLLIKIILAAAILLVIGGVLDLPLQEALFKKENKMTRTQLK 228 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290 E+K++ GNP K+ +K + + +I + A+ALR+ + P+ Sbjct: 229 KELKETMGNPEYKSARKEAHKEMTQVNTTAGKDATANLIVSGADMAIALRFHAEDTPVPI 288 Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +VAKG+ ++ + ++PI EP LA+ LF+ + I ++ +A LI + Sbjct: 289 VVAKGRGEQGDEILASGGQMSVPIEHEPELAQDLFRTLLPGQQIEERQFQKIALLIIR 346 >gi|11276519|gb|AAG33887.1| HrcU [Pseudomonas syringae pv. tomato] Length = 311 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 5/230 (2%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +K K++ K+++S N++N + S +K + +G + + T++ +++ Sbjct: 66 LKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLA 125 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + L+ + VL +IL + + ++D + KL+MS ++IK E KQS G+P + Sbjct: 126 TYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHV 185 Query: 243 KNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ +A + + A A +++ NPTHYA+AL Y E P++ KG++ Sbjct: 186 KGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDED 245 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + A + IP+ + LAR+L+K V + IP AV IYK+ Sbjct: 246 ALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGH-IYKV 293 >gi|292488070|ref|YP_003530947.1| surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] gi|291553494|emb|CBA20539.1| Surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] Length = 363 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 14/321 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLL 66 KTE P+ KK +D+ +G++ ++ ++++ +LL FS I T+ +L Sbjct: 3 QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMDFSRFIDCYTN----IL 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + D F+L + + L P + + + G+ + L Q + +K + Sbjct: 59 IDVSSVNIND-----FMLQMMYIFLG-LSFPLIGICTLSGMIATLCQTRFTIATQALKLN 112 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTENYFTMLDFISANPHSIL 185 FK ++ EG+KRI+S+ + F+KS +++ T + + + ++ + I+ Sbjct: 113 FKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIV 172 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 TV+ V I I + L D Y LKM K E+K E K+S GNP IK+ Sbjct: 173 SMLSLTVKAVTIFIAYSLVVLCA-DFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSA 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + + M A ++++I+ NPTH A+A+ + P + + N A+ + Sbjct: 232 RRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLV 291 Query: 306 IAYEHNIPIFEEPSLARSLFK 326 A + IP+ L R L+K Sbjct: 292 YAEKIGIPVVRNIFLTRRLYK 312 >gi|312172198|emb|CBX80455.1| Surface presentation of antigens protein SpaS [Erwinia amylovora ATCC BAA-2158] Length = 363 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 14/321 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLL 66 KTE P+ KK +D+ +G++ ++ ++++ +LL FS I T+ +L Sbjct: 3 QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMDFSRFIDCYTN----IL 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + D F+L + + L P + + + G+ + L Q + +K + Sbjct: 59 IDVSSVNIND-----FMLQMMYIFLG-LSFPLIGICTLSGMIATLCQTRFTIATQALKLN 112 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTENYFTMLDFISANPHSIL 185 FK ++ EG+KRI+S+ + F+KS +++ T + + + ++ + I+ Sbjct: 113 FKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIV 172 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 TV+ V I I + L D Y LKM K E+K E K+S GNP IK+ Sbjct: 173 SMLSLTVKAVTIFIAYSLVVLCA-DFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSA 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + + M A ++++I+ NPTH A+A+ + P + + N A+ + Sbjct: 232 RRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLV 291 Query: 306 IAYEHNIPIFEEPSLARSLFK 326 A + IP+ L R L+K Sbjct: 292 YAEKIGIPVVRNIFLTRRLYK 312 >gi|167743198|ref|ZP_02415972.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 14] Length = 362 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RYAEACGVPVVRNVALARSIYRNSP 315 >gi|188534807|ref|YP_001908604.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis Et1/99] gi|188029849|emb|CAO97730.1| export protein for peptides using the type III secretion system [Erwinia tasmaniensis Et1/99] Length = 371 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 32/329 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ D+ +G S++ +++LA + YL Y++ + S Sbjct: 3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLA-------YAINFHPFISFYS 55 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 R+ + IS FL+ + + + L +P + + + G L+Q + +K +FK Sbjct: 56 LVLREGDKISLNDFLVELMRVFFT-LSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFK 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVG----TIITISLTEN---YFTMLDFISANP 181 ++ +G K+I+S+ + +KS + +I+ ++I + L + Y +D + Sbjct: 115 ALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAISIYNGSIDVL---- 170 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 I T++ V+I I + L ++D Y +KM K E+K E K+S GNP Sbjct: 171 --ISVWTALTMKAVMIFIAWSVFVL-LIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPE 227 Query: 242 IKNRQKSIARSRIRHKM-----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 IK AR R H++ M A + +++ NPTH A+A+ + P + + Sbjct: 228 IKG-----ARRRAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRST 282 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 N+ A+ A + IP+ LAR L+ Sbjct: 283 NMKARAAIAYAEKIGIPVVRYIPLARRLY 311 >gi|229138469|ref|ZP_04267058.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26] gi|228645006|gb|EEL01249.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26] Length = 259 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 129/261 (49%), Gaps = 15/261 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233 Query: 243 KNRQKSI----ARSRIRHKMM 259 K ++K++ + ++R + M Sbjct: 234 KGKRKTLCTPYCKGQLRRRWM 254 >gi|3282784|gb|AAC25072.1| HrcU [Pseudomonas syringae pv. phaseolicola] Length = 359 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/365 (23%), Positives = 167/365 (45%), Gaps = 50/365 (13%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ L L+ L+ V S++ + LA Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VISEITLGLAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117 + +L+ + + F S +AS +I LL F + +G ++ R+ Sbjct: 47 DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106 Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 L++N + P F K+++S N++N + S +K + +G + + + Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159 Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 ++ ++ + + +HA + R +L +IL + + ++D + KL+MS + Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284 +IK E KQS G+P +K ++ ++ + + A A +++ NPTHYA+AL Y Sbjct: 219 DIKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPG 278 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E P++ KG++ + A + IP+ + L R+L++ + IP +AV Sbjct: 279 ETPLPLIHCKGEDEEGLALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH 337 Query: 345 LIYKI 349 IYK+ Sbjct: 338 -IYKV 341 >gi|167820372|ref|ZP_02452052.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 91] Length = 365 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|185177890|pdb|3BZP|A Chain A, Crystal Structural Of The Mutated N262a Escu C-Terminal Domain Length = 137 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 69/123 (56%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSK E+K E K + GNP IK ++ + + ++T+I+ PTH A+ L Y Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKAPTHIAICLYYKL 66 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126 Query: 344 QLI 346 QLI Sbjct: 127 QLI 129 >gi|167828744|ref|ZP_02460215.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 9] Length = 358 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A ++ +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|53716465|ref|YP_106123.1| surface presentation of antigens protein SpaS [Burkholderia mallei ATCC 23344] gi|67641434|ref|ZP_00440213.1| type III secretion system protein BsaZ [Burkholderia mallei GB8 horse 4] gi|124382305|ref|YP_001025867.1| surface presentation of antigens protein SpaS [Burkholderia mallei NCTC 10229] gi|126446476|ref|YP_001077952.1| surface presentation of antigens protein SpaS [Burkholderia mallei NCTC 10247] gi|167004213|ref|ZP_02269980.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20] gi|254176483|ref|ZP_04883141.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC 10399] gi|254200989|ref|ZP_04907354.1| type III secretion system protein BsaZ [Burkholderia mallei FMH] gi|254204953|ref|ZP_04911306.1| type III secretion system protein BsaZ [Burkholderia mallei JHU] gi|254359072|ref|ZP_04975344.1| type III secretion system protein BsaZ [Burkholderia mallei 2002721280] gi|81683780|sp|Q62B05|BSAZ_BURMA RecName: Full=Secretion apparatus protein BsaZ gi|205831285|sp|A2S1P8|BSAZ_BURM9 RecName: Full=Secretion apparatus protein BsaZ gi|206558177|sp|A3MCG6|BSAZ_BURM7 RecName: Full=Secretion apparatus protein BsaZ gi|52422435|gb|AAU46005.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC 23344] gi|126239330|gb|ABO02442.1| type III secretion system protein BsaZ [Burkholderia mallei NCTC 10247] gi|147748601|gb|EDK55676.1| type III secretion system protein BsaZ [Burkholderia mallei FMH] gi|147754539|gb|EDK61603.1| type III secretion system protein BsaZ [Burkholderia mallei JHU] gi|148028259|gb|EDK86219.1| type III secretion system protein BsaZ [Burkholderia mallei 2002721280] gi|160697525|gb|EDP87495.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC 10399] gi|238522374|gb|EEP85819.1| type III secretion system protein BsaZ [Burkholderia mallei GB8 horse 4] gi|243060408|gb|EES42594.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20] gi|261826738|gb|ABM99347.2| type III secretion system protein BsaZ [Burkholderia mallei NCTC 10229] Length = 411 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQSNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|185177893|pdb|3BZT|A Chain A, Crystal Structural Of The Mutated P263a Escu C-Terminal Domain gi|313507295|pdb|3C03|A Chain A, Crystal Structure Of The Escu C-Terminal Domain With P263a Mutation,Space Group P 1 21 1 Length = 137 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 69/123 (56%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSK E+K E K + GNP IK ++ + + ++T+I+ N TH A+ L Y Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNATHIAICLYYKL 66 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126 Query: 344 QLI 346 QLI Sbjct: 127 QLI 129 >gi|167898806|ref|ZP_02486207.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 7894] Length = 367 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|167915488|ref|ZP_02502579.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 112] Length = 375 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|123443724|ref|YP_001007695.1| surface presentation of antigens protein SpaS [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090685|emb|CAL13561.1| putative type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 374 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 20/332 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D+ +G + S++ + + +L + + FS +Y + S L +L S Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDM-VAAVVLVSGAFAISGFS-SLYGLGSLLQRILLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +E LL L + V+P LL + G L+Q L VK F Sbjct: 61 PSDIGVEA------LLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTMLDFISANPHSIL 185 ++ G K+I+++ +L +K+F+ +++ T + I + F + S Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY---SKLKMSKQEIKDEIKQSYGNPII 242 H T I++F+A ++ + + +++ LKM KQE+K E K + G+P I Sbjct: 175 AHLCIT------FIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHI 228 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+ ++ + + + + +T ++ NPTH A+ + Y P L+ K + L AK Sbjct: 229 KSARRGLHQEILSEDVKSNVRSSTFVMANPTHIAMVIYYNGDIAPVPYLMMKTRGLQAKA 288 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 + A +P+ + +AR L++ +S I Sbjct: 289 VIAYAESQGVPVVRDIPVARQLWRNYCKDSFI 320 >gi|170702400|ref|ZP_02893289.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] gi|172063760|ref|YP_001811411.1| type III secretion exporter [Burkholderia ambifaria MC40-6] gi|170132694|gb|EDT01133.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] gi|171996277|gb|ACB67195.1| type III secretion exporter [Burkholderia ambifaria MC40-6] Length = 343 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 76/362 (20%), Positives = 157/362 (43%), Gaps = 52/362 (14%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52 K + P++K++ +A +G+ P S E ++ F + L ++ L F + Sbjct: 3 EKDQKPTAKRLREARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62 Query: 53 PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 G ++ L L+ A + + IV L A + + G Sbjct: 63 AGAADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGG-------------- 108 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 V+ + + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ Sbjct: 109 ----VMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDP 164 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228 + P SIL + K+L+++ + A + ++DI H++ K+KMS +E Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEE 220 Query: 229 IKDEIKQSYGNPIIKNRQKSIAR----SRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 ++ E K+ G+P I+ +++ +AR S ++ ++ A+ Y + + Sbjct: 221 VRREHKEDEGDPHIEAKRRQLAREAQFSSLQDRIGFASVVVYSSSVAVALYYGGIGTL-- 278 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 P ++A+G+ A+++ ++A + P LA +L+ P I ++ VAQ Sbjct: 279 ----PWVLARGEGEAAERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQ 334 Query: 345 LI 346 L+ Sbjct: 335 LL 336 >gi|188534034|ref|YP_001907831.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis Et1/99] gi|188029076|emb|CAO96944.1| export protein for peptides using the type III secretion system [Erwinia tasmaniensis Et1/99] Length = 369 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 145/333 (43%), Gaps = 40/333 (12%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE P+ KK +D+ +G ++ + +L+ +L Y V D + + Sbjct: 4 KTELPTEKKRKDSARKGQTLKVKDFTTTVILLSGSYFL-------CYGVNFDDFIFFYTG 56 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 E ++ F++ S+ +LV P + + + GI + L+Q + +K +FK Sbjct: 57 VLNDSESLNIDGFIMEMTSIFL-KLVFPFIAICCLSGIAATLLQTRFNIASEGLKLNFKA 115 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG K+I+S+ L +KS + +G I +++LD N +I Sbjct: 116 LNPVEGFKKIFSLRTLKECVKS---VCYLGVFICTC-----YSLLDSDLKNILAIRNAGI 167 Query: 190 FTVRKVLIMILLFIATLTVLDIGWS-----------YHQWYSKLKMSKQEIKDEIKQSYG 238 V+ ++ M+ L + +TV W Y LKM K E+K E K++ G Sbjct: 168 --VQLIVSMLSLTVKAVTVF-AAWGALVLCAEFIAEYFLHVKDLKMDKYEVKQERKETEG 224 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRA-----TIIITNPTHYALALRYIQTENDAPVLVA 293 NP IKN AR R +++ RA ++++ NPTH A+A+ + P + Sbjct: 225 NPQIKN-----ARRRAHQEILSGEERAAIRNSSVVMANPTHIAVAIYFNPDVAPLPFIAL 279 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 + N A+ A + IP+ L R L++ Sbjct: 280 RVTNFKARSAISYAEKIGIPVVRNIFLTRRLYR 312 >gi|53722555|ref|YP_111540.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei K96243] gi|167923333|ref|ZP_02510424.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei BCC215] gi|217425128|ref|ZP_03456623.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|226195957|ref|ZP_03791543.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|254185170|ref|ZP_04891759.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|254301459|ref|ZP_04968903.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|81606433|sp|Q63K32|BSAZ_BURPS RecName: Full=Secretion apparatus protein BsaZ gi|52212969|emb|CAH39007.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|157811010|gb|EDO88180.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|184215762|gb|EDU12743.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|217391733|gb|EEC31760.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|225931850|gb|EEH27851.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] Length = 411 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|126455636|ref|YP_001076109.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 1106a] gi|167850199|ref|ZP_02475707.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei B7210] gi|242313702|ref|ZP_04812719.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|254193747|ref|ZP_04900179.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|206558142|sp|A3P6Z9|BSAZ_BURP0 RecName: Full=Secretion apparatus protein BsaZ gi|126229404|gb|ABN92817.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106a] gi|169650498|gb|EDS83191.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|242136941|gb|EES23344.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] Length = 411 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|134282061|ref|ZP_01768767.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|237508812|ref|ZP_04521527.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei MSHR346] gi|254186853|ref|ZP_04893369.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|134246590|gb|EBA46678.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|157934537|gb|EDO90207.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|235001017|gb|EEP50441.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei MSHR346] Length = 411 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|330879005|gb|EGH13154.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 279 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 14/218 (6%) Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITISLTEN 169 V ++ ++P KR++ EG KRI+++ NL+ F+K VK++L VG +L E+ Sbjct: 66 VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMES 125 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 I + + +L FTV + L + + VL W + + ++KMS E Sbjct: 126 SRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKMSHSEQ 178 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K E K G+P+IK ++ R RA+++I + + + +RY++ E P Sbjct: 179 KRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVP 238 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 ++V + + + + A I + + SLA + ++ Sbjct: 239 IVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARR 276 >gi|292899281|ref|YP_003538650.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199129|emb|CBJ46243.1| type III secretion system protein [Erwinia amylovora ATCC 49946] Length = 365 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 18/268 (6%) Query: 76 DISHIVFLLTHLSLSASRLVIPGLLLFMMF----------------GIGSYLIQRIPVLN 119 D S + T++ + S + I +L MM+ G+ + L Q + Sbjct: 48 DFSRFIDCYTNILIDVSSVNINDFMLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIA 107 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTENYFTMLDFIS 178 +K +FK ++ EG+KRI+S+ + F+KS +++ T + + + ++ + Sbjct: 108 TQALKLNFKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYA 167 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 I+ TV+ V I I + L D Y LKM K E+K E K+S G Sbjct: 168 GIAQLIVSMLSLTVKAVTIFIAYSLVVLCA-DFIMEYFLHVKDLKMDKHEVKQERKESDG 226 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP IK+ ++ + + + M A ++++I+ NPTH A+A+ + P + + N Sbjct: 227 NPQIKSARRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNF 286 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFK 326 A+ + A + IP+ L R L+K Sbjct: 287 KARAVLVYAEKIGIPVVRNIFLTRRLYK 314 >gi|76818361|ref|YP_335733.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 1710b] gi|254264647|ref|ZP_04955512.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] gi|123597194|sp|Q3JL20|BSAZ_BURP1 RecName: Full=Secretion apparatus protein BsaZ gi|76582834|gb|ABA52308.1| surface presentation of antigens protein [Burkholderia pseudomallei 1710b] gi|254215649|gb|EET05034.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] Length = 411 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|126443467|ref|YP_001063158.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 668] gi|206558186|sp|A3NLD7|BSAZ_BURP6 RecName: Full=Secretion apparatus protein BsaZ gi|126222958|gb|ABN86463.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 668] Length = 406 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|167907134|ref|ZP_02494339.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei NCTC 13177] Length = 411 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A + I +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|85058550|ref|YP_454252.1| surface presentation of antigens protein SpaS [Sodalis glossinidius str. 'morsitans'] gi|45504758|gb|AAS66849.1| YsaU [Sodalis glossinidius] gi|84779070|dbj|BAE73847.1| type III secretion apparatus SpaS [Sodalis glossinidius str. 'morsitans'] Length = 370 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 79/337 (23%), Positives = 157/337 (46%), Gaps = 30/337 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF--FSPGIYSVTSDLHVLL 66 KTE P+ K+ ++ +G + ++ + ++ + YL + F P I +V+L Sbjct: 3 EKTEKPTEKRSRESAQKGQSFKVKDVTTTVVLIGGIAYLGYGMDFQPFIAFYN---NVVL 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 E +S+ +L++ L++ +L +P + + + G S L+Q V+ +K + Sbjct: 60 NG------ERLSYQAYLIS-LAMLFMQLTLPIVAVCFIAGTFSTLLQTRMVIATKAIKLN 112 Query: 127 FKRVSLREGIKRIYSINNLVNFMKS--FVKIILVGTIITISLTENYFT------MLDFIS 178 F ++ +G+KRI+++ + +K+ +V + +VG NYF +L Sbjct: 113 FDALNPVKGLKRIFNLRAVKELVKTLCYVAVFVVGV--------NYFQSHYLKELLSIYH 164 Query: 179 ANPHSILY-HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 N ++ + V+ V I + + + L VLD Y + +KM K E+K E K++ Sbjct: 165 GNIWQVIRIWSELAVKLVFIYVGVSLIVL-VLDGLCEYFLQFKDMKMEKHEVKQEHKENE 223 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK+ +++ + A + +I+ NPTH AL + + P + + N Sbjct: 224 GNPEIKSARRNAHFELLSGAEQAAIRSSEMILANPTHIALGIFFNPDVAMLPFITLRATN 283 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 + A+ + A + +P+ LAR L+K ++S I Sbjct: 284 MKARAIIAYAEKVGVPVVRSIPLARRLYKNYTVHSFI 320 >gi|167724223|ref|ZP_02407459.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei DM98] Length = 352 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A ++ +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQLNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S + + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L +LD Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|284007395|emb|CBA72801.1| type III secretion system protein SpaS [Arsenophonus nasoniae] Length = 345 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 79/318 (24%), Positives = 152/318 (47%), Gaps = 10/318 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G + S++ +++CLI+L + + T+ + + + Sbjct: 4 NKTEKPTPKKLKDAAQKGKSFKSKDL-----VISCLIFLGCLYLTNYINFTTIIEIW--A 56 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 T + I+ + + L +A ++ +P L L ++ + + + Q + +K F Sbjct: 57 NTLKNNHSITPLNYTFV-LFFTALKIFLPFLFLCILIIMLTTMAQTGFKIATKVLKFDFN 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+K+I+SI + +F+K+F+ II+ + I N + I N S+ Sbjct: 116 NLNPINGVKKIFSIRTIKDFIKTFLFIIIFFIVTYIYWNNNKKIIFSQIYLNIESVFIVW 175 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V +I++LL + +LD Y LKM K E+K E K+ GNP IK+++K Sbjct: 176 KELVSNFIIILLLSSFIILILDAVAEYFIHIKDLKMDKNEVKREYKEQEGNPEIKSKRKE 235 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA-PVLVAKGQNLIAKKMRKIA 307 + + ++ + +I NPTH + + Y+ + A P++ N A R A Sbjct: 236 LHVEILSEQVKSDIESSKFMIANPTHIIIGI-YLNPQIVAIPMVSVLETNQRALAARAYA 294 Query: 308 YEHNIPIFEEPSLARSLF 325 + +P+ E LAR ++ Sbjct: 295 EKEGVPVIENIVLARRIY 312 >gi|211939072|pdb|2W0R|A Chain A, Crystal Structure Of The Mutated N263d Yscu C-Terminal Domain Length = 144 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 72/126 (57%) Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 +LKMSK EIK E K+ G+P IK++++ + M E R+++++ +PTH A+ + Sbjct: 3 ELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVADPTHIAIGIL 62 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP + Sbjct: 63 YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122 Query: 341 AVAQLI 346 A A+++ Sbjct: 123 ATAEVL 128 >gi|15088606|gb|AAK84117.1|AF369954_15 YsaU [Yersinia enterocolitica] gi|16799075|gb|AAF82331.2|AF005744_10 YsaU [Yersinia enterocolitica] Length = 374 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 20/332 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D+ +G + S++ ++A + F S +Y + S L +L S Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAISGFSS--LYGLGSLLQRILLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +E ++ L L L A V+P LL + G L+Q L VK F Sbjct: 61 PSDIGVE---ALLDKLYSLFLQA---VVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTMLDFISANPHSIL 185 ++ G K+I+++ +L +K+F+ +++ T + I + F + S Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY---SKLKMSKQEIKDEIKQSYGNPII 242 H T I++F+A ++ + + +++ LKM KQE+K E K + G+P I Sbjct: 175 AHLCIT------FIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHI 228 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+ ++ + + + ++ +T ++ NPTH A+ + Y P L+ K + L AK Sbjct: 229 KSARRGLHQEILSEEVKSNVRGSTFVMANPTHIAMVIYYNDDIAPLPYLMMKTRGLQAKA 288 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 + A +P+ + +AR L++ +S I Sbjct: 289 VIAYAESQGVPVVRDIPVARQLWRNYRKDSFI 320 >gi|34498076|ref|NP_902291.1| surface presentation of antigens protein SpaS [Chromobacterium violaceum ATCC 12472] gi|34103931|gb|AAQ60291.1| secretory protein / flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] Length = 353 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 14/320 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G + SR+ + L + YL+ F S + + LA Sbjct: 4 NKTEKPTRKKLQDAAKKGQSFKSRDLVVACLTLCGVAYLVSFGS--LVELMGIFRQALAG 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 Q + + VF L L + L ++ G L LNL + P Sbjct: 62 GFQLDMRGYAQAVFWQGLKLLLPIFLLCVAASALPVLLQTGFVLASEALKLNLEALNPI- 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 G K+++S+ + +K+ + L ++ ++L L F N + Sbjct: 121 ------NGFKKLFSLRTVKEAVKAL--LYLASFVVAVALIWRKHKALLFAQLNGSVMDIA 172 Query: 188 AFFTVRKVLIMILL--FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 A + + +++ I + +LD Y + +KM KQE+K E+K+ GNP IK+R Sbjct: 173 AVWRELLLSLVLTCLGCIVLILILDALAEYFLFMKDMKMDKQEVKREMKEQEGNPEIKSR 232 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + ++ + +II NPTH A+ + + P + N A +R Sbjct: 233 RREAHFELLSEQVKSDVENSRLIIANPTHIAIGIYFRPELVPIPFVSVMETNQRALAVRA 292 Query: 306 IAYEHNIPIFEEPSLARSLF 325 A + +P+ + LAR + Sbjct: 293 YAEKVGVPVVRDVPLARRIL 312 >gi|161502069|ref|YP_001569181.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863416|gb|ABX20039.1| hypothetical protein SARI_00086 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 356 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/322 (21%), Positives = 147/322 (45%), Gaps = 16/322 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++A Sbjct: 4 NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAE 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++ + D S V + + +IP +LL ++ L+Q VL +K + Sbjct: 62 NFEQSMADYSLAVLGV------GLKYLIPFMLLCLVCSALPTLLQTGFVLATEALKLNLS 115 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH----SI 184 ++ EG K+++S+ + + +K+ + L ++ + + + F N + ++ Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVMGIAV 173 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 ++ + + I L LD Y +KM K+E+K E+K+ GNP +K+ Sbjct: 174 IWRELLLALVLTCLACALIVLL--LDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKS 231 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +++ + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 232 KRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPFPMISVYETNQRALAVR 291 Query: 305 KIAYEHNIPIFEEPSLARSLFK 326 A + +P+ + LARSLFK Sbjct: 292 SYAEKVGVPVIVDIKLARSLFK 313 >gi|171319013|ref|ZP_02908140.1| type III secretion exporter [Burkholderia ambifaria MEX-5] gi|171095768|gb|EDT40721.1| type III secretion exporter [Burkholderia ambifaria MEX-5] Length = 250 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 32/257 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISRE------ASLFSSILACLIYLLFFFSPGIYSVTSDL 62 K+E P+ ++ A EG SR+ +++ LA YL F + + D+ Sbjct: 3 EKSEQPTDNRLRQARREGQISKSRDLTQALAGAMWPLALAGTFYLGFGTAVRVMQGVLDM 62 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-------LLFMMFGIGSYLIQRI 115 + R+ T + + SR+++P + L+ + I L+Q Sbjct: 63 ---IGEGAAREP----------TRIDFAVSRVIVPTITLSVGVALVGAVTAIAMELLQTK 109 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +L++ + P+ +++ +K I+S+ LV+ K+ VK+ +GT I + + Sbjct: 110 GLLSVKPIVPNLGKLNPISQLKNIFSLRTLVDLAKNLVKVTAIGTCTLIVIRLGLPDLAG 169 Query: 176 FISANPHSIL---YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + + +IL H F + +L+ +A + D+G+ +++ LKM+K E+K + Sbjct: 170 LAAVDAPAILAVTTHLLFKIATASAGVLVVLAAI---DVGYQKYEYIKGLKMTKDEVKRD 226 Query: 233 IKQSYGNPIIKNRQKSI 249 KQ G+P+IK ++ + Sbjct: 227 YKQQEGDPLIKGERRRL 243 >gi|167577442|ref|ZP_02370316.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis TXDOH] Length = 381 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A ++ S P + +T Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALVVIATGALSAPALVDLTRVAAEFTR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRIDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S ++ + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPIKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L ++D Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-IVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|83716929|ref|YP_439036.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis E264] gi|167615593|ref|ZP_02384228.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis Bt4] gi|257142144|ref|ZP_05590406.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis E264] gi|123539589|sp|Q2T713|BSAZ_BURTA RecName: Full=Secretion apparatus protein BsaZ gi|83650754|gb|ABC34818.1| type III secretion system protein BsaZ [Burkholderia thailandensis E264] Length = 381 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 16/325 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIYSVTSDLHVLLA 67 KTE P++KK+ DA +G +R+ I+A ++ S P + +T Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARD------IVALVVIATGALSAPALVDLTRVAAEFTR 56 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A+ + L L R+ P +LL G L+Q L + ++ Sbjct: 57 IASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRFDL 113 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+KR++S ++ + +K+ + + + + + + + A P ++L H Sbjct: 114 TALDPVKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARP-ALLGH 172 Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TVR VL+ +L + L ++D Y ++ +LKM K E+K E K+S GN IK++ Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-IVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 ++ I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVI 290 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329 + A +P+ +LARS+++ P Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315 >gi|149912839|ref|ZP_01901373.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b] gi|149813245|gb|EDM73071.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b] Length = 119 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 51/82 (62%) Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 A ++I NPTHYA+AL + + N APV VAKG + +A +R++A +H +P+ +P AR++ Sbjct: 24 ADVVIVNPTHYAVALTWSRAPNSAPVCVAKGVDYMALAIREMAEDHGVPVRSDPPTARAI 83 Query: 325 FKQVPINSAIPPVFYKAVAQLI 346 I I P Y+AVA I Sbjct: 84 HATTEIGMEIDPGQYQAVAAAI 105 >gi|332669212|ref|YP_004452220.1| type III secretion exporter [Cellulomonas fimi ATCC 484] gi|332338250|gb|AEE44833.1| type III secretion exporter [Cellulomonas fimi ATCC 484] Length = 400 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 79/128 (61%), Gaps = 5/128 (3%) Query: 221 KLKMSKQEIKDEIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 + +M+ +E+K+E K++ G+P++K R K +A SR ++MM + A +++ NPTH A+A Sbjct: 213 QTRMTLREVKEEHKRTEGDPMLKGAIRSKQLAMSR--NRMMAEVANADVVLVNPTHVAVA 270 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 LRY + AP +VAKG +A K+R A + +P+ E+ LAR+L + IP Sbjct: 271 LRY-EPGTGAPRVVAKGAGAVAAKIRSAASDARVPMVEDVPLARALHAACELGQEIPAHL 329 Query: 339 YKAVAQLI 346 + AVA+++ Sbjct: 330 FTAVARVL 337 >gi|13475308|ref|NP_106872.1| translocation protein in type III secretion system, hrcU [Mesorhizobium loti MAFF303099] gi|14026059|dbj|BAB52658.1| translocation protein in type III secretion system; HrcU [Mesorhizobium loti MAFF303099] Length = 345 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 76/350 (21%), Positives = 152/350 (43%), Gaps = 17/350 (4%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ + KT A + KK+ DA +G P S + A L YL + I + Sbjct: 2 SDSSEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYL-WLRGSAIEDKCRE-A 59 Query: 64 VLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 +L Q D + + +L L+L+ ++ L+ ++ + S L V +L Sbjct: 60 LLFVDKLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVL--LASILANGGFVFSLE 117 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + P+F +++ +G+KR+ S ++V K+ K+ ++G + L + TM+ ++ Sbjct: 118 PMTPNFDKINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMV-YLPFCG 176 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 L + ++ + + ++D+ + +++M+K E+ E+K G P Sbjct: 177 MGCLGLVVTGAKLLIGIGAGALLAAGLIDLLVQRALFLREMRMTKTEVTRELKDQQGAPE 236 Query: 242 IKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 +K+ R RIR + + AT+I T + LRY++ E PVLV + Sbjct: 237 LKSE-----RRRIRDESADEPPLGVHHATLIFKG-TAILIGLRYVRGETGVPVLVCRADG 290 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 A + A + I + LA L + + IP +++ VA+ ++ Sbjct: 291 ERASHLLSEARALRLEIVDNDVLAHQLIGKTQLGRPIPMQYFEPVARALF 340 >gi|167840165|ref|ZP_02466849.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis MSMB43] Length = 366 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/324 (22%), Positives = 146/324 (45%), Gaps = 14/324 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ + +I +P + +T Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDI-----VALVVIATGALAAPALVDLTRIAAEFARI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ D F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASSGAQPDPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ + K+ + + + + + + + A ++L H Sbjct: 115 ALDPVKGMKRLFSWRSVKDAAKALLYVAVFAVTVRVFADLCHHDLFGLFRAR-AALLGHM 173 Query: 189 F--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + T+R VL+ +L + L ++D Y+ ++ +LKM K E+K E K+S GN IK+++ Sbjct: 174 WIVLTIRLVLLFLLCALPVL-IVDAAVEYYLYHRELKMDKHEVKQEYKESEGNHEIKSKR 232 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305 + I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + + Sbjct: 233 REIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVIR 291 Query: 306 IAYEHNIPIFEEPSLARSLFKQVP 329 A + + +LARS+++ P Sbjct: 292 HAEACGVTVVRNVALARSIYRNSP 315 >gi|222446917|pdb|2JLH|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia Pestis Yscu N263a Mutant Length = 144 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 71/126 (56%) Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 +LKMSK EIK E K+ G+P IK++++ + M E R+++++ PTH A+ + Sbjct: 3 ELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAPTHIAIGIL 62 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP + Sbjct: 63 YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122 Query: 341 AVAQLI 346 A A+++ Sbjct: 123 ATAEVL 128 >gi|312171382|emb|CBX79641.1| Surface presentation of antigens protein SpaS [Erwinia amylovora ATCC BAA-2158] Length = 371 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 20/323 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ D+ +G S++ ++L YL + S TS ++L Sbjct: 3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L D LT L L +P + + + G L+Q + +K +F+ Sbjct: 61 GDKISLND------FLTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114 Query: 129 RVSLREGIKRIYSINNLVNFMKS-FVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+K+I+S+ + +KS F ++ + T + + + + + I Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 T++ V++ I + A + ++D Y + +KM K E+K E K+S GNP IK Sbjct: 175 ITLTIKAVMVFIG-WSAFVLIMDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKG--- 230 Query: 248 SIARSRIRHKM-----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 AR R H++ M A + +++ NPTH A+A+ + P + + N+ AK Sbjct: 231 --ARRRAHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKA 288 Query: 303 MRKIAYEHNIPIFEEPSLARSLF 325 A + IP+ L R L+ Sbjct: 289 AIAYAEKIGIPVVRYIPLTRRLY 311 >gi|21492901|ref|NP_659976.1| type III secretion system translocation protein [Rhizobium etli CFN 42] gi|21467326|gb|AAM54989.1| type III secretion system translocation protein [Rhizobium etli CFN 42] Length = 265 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 21/260 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ND + KT PS K++ EG P S+E + S+LA +Y+ + + T Sbjct: 1 MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPDILEDFTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------QR 114 L SA + + D + T ++L + + L + G+ + ++ Q Sbjct: 61 SFDAGLQSAARADVSDAVTVGLSETGVAL------LDLIWLPLAMGLAATILVSILDGQG 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 PV + H+ F R++ EGIKR++S+ ++ F+K VK +L+ T ++ YF L Sbjct: 115 FPV-SFKHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAIL--YF--L 169 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTV----LDIGWSYHQWYSKLKMSKQEIK 230 + I +P T +L IL+ A + V DI S + + +M+K E + Sbjct: 170 NSIFWSPLCGEACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEAR 229 Query: 231 DEIKQSYGNPIIKNRQKSIA 250 E K + G+P +K+ ++ I Sbjct: 230 REYKDTQGDPKLKSARRQIG 249 >gi|292487274|ref|YP_003530146.1| surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] gi|292900354|ref|YP_003539723.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200202|emb|CBJ47330.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552693|emb|CBA19738.1| Surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] Length = 371 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 20/323 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ D+ +G S++ ++L YL + S TS ++L Sbjct: 3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L D LT L L +P + + + G L+Q + +K +F+ Sbjct: 61 GDKISLND------FLTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114 Query: 129 RVSLREGIKRIYSINNLVNFMKS-FVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + +G+K+I+S+ + +KS F ++ + T + + + + + I Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 T++ V++ I + A + ++D Y + +KM K E+K E K+S GNP IK Sbjct: 175 ITLTIKAVMVFIG-WSAFVLIIDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKG--- 230 Query: 248 SIARSRIRHKM-----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 AR R H++ M A + +++ NPTH A+A+ + P + + N+ AK Sbjct: 231 --ARRRAHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKA 288 Query: 303 MRKIAYEHNIPIFEEPSLARSLF 325 A + IP+ L R L+ Sbjct: 289 AIAYAEKIGIPVVRYIPLTRRLY 311 >gi|3603323|gb|AAC35808.1| hrp type III pathway protein [Pseudomonas syringae pv. glycinea] Length = 325 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 186 YHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 +HA + R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K Sbjct: 142 WHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKG 201 Query: 245 RQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 ++ ++ + + A A +++ NPTHYA+AL Y E P++ KG++ A Sbjct: 202 HRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPCETPLPLIHCKGEDEEAL 261 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A IP+ L R+L++ + IP +AV IYK+ Sbjct: 262 ALIARAKNAGIPVVHSIWLTRTLYR-AKVGKYIPRPTLQAVGH-IYKM 307 >gi|228900351|ref|ZP_04064580.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222] gi|228859238|gb|EEN03669.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222] Length = 259 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 11/248 (4%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 K D + +L+ L L S P L+L F + +Y+IQ + + +KP Sbjct: 62 FNQIG--KNTDSTEYFYLMGMLLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++ + + IL+ + L+++D W Y Q +KM K+E+K E K + G+P + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233 Query: 243 KNRQKSIA 250 K ++K++ Sbjct: 234 KGKRKTLC 241 >gi|74314954|ref|YP_313372.1| surface presentation of antigens protein SpaS [Shigella sonnei Ss046] gi|82524599|ref|YP_406194.1| surface presentation of antigens protein SpaS [Shigella dysenteriae Sd197] gi|187734501|ref|YP_001883219.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94] gi|194435373|ref|ZP_03067572.1| Spa40 [Shigella dysenteriae 1012] gi|32307049|gb|AAP79019.1| Spa40 [Shigella flexneri] gi|73858431|gb|AAZ91137.1| Spa40 [Shigella sonnei Ss046] gi|81243997|gb|ABB64706.1| Spa40 [Shigella dysenteriae Sd197] gi|187426997|gb|ACD06272.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94] gi|194416383|gb|EDX32553.1| Spa40 [Shigella dysenteriae 1012] gi|320182867|gb|EFW57742.1| surface presentation of antigens protein SpaS [Shigella flexneri CDC 796-83] Length = 342 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 24/326 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G + ++ + IL ++ FFS SD+ +L Sbjct: 3 NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFS------LSDVMLLYRY 56 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 E I+ + + + + P L ++ + L+Q VL +K F Sbjct: 57 VIINDFE-INEGKYFFAVVIVFFKIIGFP-LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--------FISAN 180 ++ +G+K+I+SI + F KS + +I ++LT +F + D F S + Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKS------ILLLIILALTTYFFWINDRKIIFSQVFSSVD 168 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ F + +++ L F + +LD + + + M KQEIK E + G+ Sbjct: 169 GLYLIWGGLF--KDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHF 226 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 K+R++ + + + + +++ NPTH A+ + + AP + N A Sbjct: 227 ETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCA 286 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFK 326 +RK A E IP + LAR L+K Sbjct: 287 LAVRKYANEVGIPTVRDVKLARKLYK 312 >gi|167566195|ref|ZP_02359111.1| surface presentation of antigens protein SpaS [Burkholderia oklahomensis EO147] Length = 374 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 74/324 (22%), Positives = 149/324 (45%), Gaps = 14/324 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G SR+ I A + V ++ + ++ Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKSRDIVALVVIAAGASSAAAVVD--LTRVAAEFVRIAST 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + F L L R+ P +L+ + G L+Q L + ++ Sbjct: 61 GAQ---PNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ +K+ + + ++ + + + + A P ++L H Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARP-ALLGHM 173 Query: 189 F--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + TVR VL+ +L + L ++D Y ++ +LKM K E+K E K+S GN IK+++ Sbjct: 174 WIVLTVRLVLLFLLCALPVL-IVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKR 232 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305 + I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + + Sbjct: 233 REIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVIR 291 Query: 306 IAYEHNIPIFEEPSLARSLFKQVP 329 A +P+ +LARS+++ P Sbjct: 292 HAEACGVPVVRNVALARSIYRNSP 315 >gi|229195982|ref|ZP_04322734.1| Flagellar biosynthetic protein [Bacillus cereus m1293] gi|228587364|gb|EEK45430.1| Flagellar biosynthetic protein [Bacillus cereus m1293] Length = 108 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 36/82 (43%), Positives = 54/82 (65%) Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R +A E IP+ E LARSL Sbjct: 16 ATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSL 75 Query: 325 FKQVPINSAIPPVFYKAVAQLI 346 + QV + AIP Y AV +++ Sbjct: 76 YYQVEEDMAIPEDLYVAVIEVM 97 >gi|13449103|ref|NP_085319.1| Type III secretion protein [Shigella flexneri 5a] gi|31983539|ref|NP_858289.1| surface presentation of antigens protein SpaS [Shigella flexneri 2a str. 301] gi|60415918|sp|P0A1M8|SPAS_SHIFL RecName: Full=Surface presentation of antigens protein spaS; AltName: Full=Spa40 protein gi|60415919|sp|P0A1M9|SPAS_SHISO RecName: Full=Surface presentation of antigens protein spaS; AltName: Full=Spa40 protein gi|13310651|gb|AAK18475.1|AF348706_164 Type III secretion protein [Shigella flexneri 5a] gi|303896|dbj|BAA02832.1| spa40 [Shigella flexneri] gi|829083|dbj|BAA09165.1| ORF25 [Shigella sonnei] gi|12329100|emb|CAC05831.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella flexneri] gi|18462531|gb|AAL72303.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603911|gb|ADA76894.1| surface presentation of antigens protein SpaS [Shigella flexneri 2002017] Length = 342 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 24/326 (7%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G + ++ + IL ++ FFS SD+ +L Sbjct: 3 NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFS------LSDVMLLYRY 56 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 E I+ + + + + P L ++ + L+Q VL +K F Sbjct: 57 VIINDFE-INEGKYFFAVVIVFFKIIGFP-LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--------FISAN 180 ++ +G+K+I+SI + F KS + +I ++LT +F + D F S + Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKS------ILLLIILALTTYFFWINDRKIIFSQVFSSVD 168 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ F + +++ L F + +LD + + + M KQEIK E + G+ Sbjct: 169 GLYLIWGRLF--KDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHF 226 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 K+R++ + + + + +++ NPTH A+ + + AP + N A Sbjct: 227 ETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCA 286 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFK 326 +RK A E IP + LAR L+K Sbjct: 287 LAVRKYANEVGIPTVRDVKLARKLYK 312 >gi|190894062|ref|YP_001984356.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] gi|190699723|gb|ACE93806.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] Length = 265 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 21/260 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ND + KT PS K++ EG P S+E + S+LA +Y+ + + T Sbjct: 1 MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPAILEDFTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------QR 114 L SA + L D + T ++L + + L + G+ + ++ Q Sbjct: 61 SFDSGLQSAGRADLSDAVTVGLSETGVAL------LDLIWLPLATGLAATILVSILDGQG 114 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 PV + H+ F R++ EGIKR++S+ ++ F+K VK +L+ T ++ YF L Sbjct: 115 FPV-SFKHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAIL--YF--L 169 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTV----LDIGWSYHQWYSKLKMSKQEIK 230 + I +P +L IL+ A + V DI S + + +M+K E + Sbjct: 170 NSIFWSPLCGEACTLSATAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEAR 229 Query: 231 DEIKQSYGNPIIKNRQKSIA 250 E K + G+P +K+ ++ I Sbjct: 230 REYKDTQGDPKLKSARRQIG 249 >gi|167573305|ref|ZP_02366179.1| surface presentation of antigens protein SpaS [Burkholderia oklahomensis C6786] Length = 374 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/324 (22%), Positives = 149/324 (45%), Gaps = 14/324 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G SR+ + +I + + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKSRDI-----VALVVIAAGASSAAAVVDLTRVAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +L+ + G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ +K+ + + ++ + + + + A P ++L H Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARP-ALLGHM 173 Query: 189 F--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + T+R VL+ +L + L ++D Y ++ +LKM K E+K E K+S GN IK+++ Sbjct: 174 WIVLTIRLVLLFLLCALPVL-IVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKR 232 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305 + I + + ++ ++ I+ NPTH A+ + Y+ + P + + N A + + Sbjct: 233 REIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVIR 291 Query: 306 IAYEHNIPIFEEPSLARSLFKQVP 329 A +P+ +LARS+++ P Sbjct: 292 HAEACGVPVVRNVALARSIYRNSP 315 >gi|330975860|gb|EGH75926.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 175 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ +A+ + Sbjct: 2 ILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEIL 61 Query: 255 RHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311 + A A +++ NPTHYA+AL Y E P++ KG++ A + A + Sbjct: 62 NQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAG 121 Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 IP+ + L R+L++ + IP +AV IYK+ Sbjct: 122 IPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 157 >gi|222446919|pdb|2JLJ|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia Pestis Yscu N263a P264a Mutant Length = 144 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 70/126 (55%) Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 +LKMSK EIK E K+ G+P IK++++ + M E R+++++ TH A+ + Sbjct: 3 ELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIGIL 62 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP + Sbjct: 63 YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122 Query: 341 AVAQLI 346 A A+++ Sbjct: 123 ATAEVL 128 >gi|86157128|ref|YP_463913.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] gi|85773639|gb|ABC80476.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] Length = 343 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 12/237 (5%) Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L+L + P +R+ G++R+ S + L VK ++ + L ++ Sbjct: 109 LSLAALAPRLERLDPARGLRRLLSTSQLAAAALGLVKAAVLAALACGWLAGAAPSLAALP 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P + L+ + + + + A L LD+ + L M++ E++ E ++ Sbjct: 169 RLGP-AALWRSPAVLGGLTWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDE 227 Query: 238 GNPIIK-NRQKSIARSRIRHKMM---EATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 G+P+ + RQ+ RH+ + A +RAT+++ NPTH A+AL + + + AP +VA Sbjct: 228 GDPLHRAERQR-------RHRALLEAPAVARATVVVVNPTHLAVALHHDRRDGGAPRVVA 280 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 KG A ++R A +P+ + +LAR+L + + IP Y+A A ++ +Y Sbjct: 281 KGAGDAAARIRSAARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLY 337 >gi|284007676|emb|CBA73401.1| surface presentation of antigens protein SpaS,YscU,EscU,HrcU,SsaU [Arsenophonus nasoniae] Length = 275 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 30/230 (13%) Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 LIQ +L +K FK++ + +GIKR+ L N K+ + + I ++ Y Sbjct: 14 LIQSKFILATEAIKLDFKKLDIVQGIKRLVDKRALKNLFKALL-------FLAIFISSCY 66 Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMIL---------------LFIATLTVLDIGWSY 215 F FI + ++L FT RK + I+ LF + LD Y Sbjct: 67 F----FIQSYQSTLL----FTQRKTIWHIIYDWRILTLKFVLFFLLFSLPILFLDALCEY 118 Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275 +S++KM K E+K E K++ GNP IK+ ++ + + + +A +++++I+ NPTH Sbjct: 119 FLHHSEMKMEKHEVKREYKENEGNPEIKSARRGAHQELLNAETKQAIAQSSMILANPTHI 178 Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 A+ + + + P++ + N A ++ A + IPI LAR ++ Sbjct: 179 AIGIYFDPDNSILPLVAVRMANQYALAVQAYAKQIGIPIVRNIKLARQIY 228 >gi|211938988|pdb|2V5G|A Chain A, Crystal Structure Of The Mutated N263a Yscu C-Terminal Domain Length = 144 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 69/126 (54%) Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 +LK SK EIK E K+ G+P IK++++ + E R+++++ PTH A+ + Sbjct: 3 ELKXSKDEIKREYKEXEGSPEIKSKRRQFHQEIQSGNXRENVKRSSVVVAAPTHIAIGIL 62 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP + Sbjct: 63 YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122 Query: 341 AVAQLI 346 A A+++ Sbjct: 123 ATAEVL 128 >gi|222446918|pdb|2JLI|A Chain A, Atomic Resolution Structure Of The Cytoplasmic Domain Of Yersinia Pestis Yscu, A Regulatory Switch Involved In Type Iii Secretion Length = 123 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 66/119 (55%) Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIK E K+ G+P IK++++ + M E R+++++ NPTH A+ + Y + E Sbjct: 1 EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP 60 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 P++ K + + +RKIA E +PI + LAR+L+ ++ IP +A A+++ Sbjct: 61 LPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 119 >gi|157159225|ref|YP_001464194.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A] gi|209920314|ref|YP_002294398.1| putative type III secretion protein [Escherichia coli SE11] gi|256019342|ref|ZP_05433207.1| surface presentation of antigens protein SpaS [Shigella sp. D9] gi|293449182|ref|ZP_06663603.1| type III secretion protein SctU [Escherichia coli B088] gi|300815712|ref|ZP_07095936.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 107-1] gi|307310523|ref|ZP_07590171.1| type III secretion exporter [Escherichia coli W] gi|331678844|ref|ZP_08379518.1| type III secretion protein EprS [Escherichia coli H591] gi|332280456|ref|ZP_08392869.1| type III secretion protein EprS [Shigella sp. D9] gi|157081255|gb|ABV20963.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A] gi|209913573|dbj|BAG78647.1| putative type III secretion protein [Escherichia coli SE11] gi|291322272|gb|EFE61701.1| type III secretion protein SctU [Escherichia coli B088] gi|300531641|gb|EFK52703.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 107-1] gi|306909418|gb|EFN39913.1| type III secretion exporter [Escherichia coli W] gi|320202503|gb|EFW77073.1| surface presentation of antigens protein SpaS [Escherichia coli EC4100B] gi|323377251|gb|ADX49519.1| type III secretion exporter [Escherichia coli KO11] gi|324119899|gb|EGC13778.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1167] gi|331073674|gb|EGI44995.1| type III secretion protein EprS [Escherichia coli H591] gi|332102808|gb|EGJ06154.1| type III secretion protein EprS [Shigella sp. D9] Length = 243 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 12/247 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + I+ I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK+++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232 Query: 249 IARSRIR 255 R RIR Sbjct: 233 --RERIR 237 >gi|253990923|ref|YP_003042279.1| type III secretion system EscU protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782373|emb|CAQ85537.1| Putative type III secretion system EscU protein [Photorhabdus asymbiotica] Length = 346 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/362 (21%), Positives = 160/362 (44%), Gaps = 35/362 (9%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K P++KK+ D +G P + A SI+ LFF S ++ V Sbjct: 2 ESTEPKKYPPTAKKLRDLRKKGQFPKTELAEPTFSIV------LFFISISLFIV------ 49 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----------IGSYLIQR 114 LL S D ++ V + + LS+ I L MM + +I + Sbjct: 50 LLFS-------DFNYWVEFIVYADLSSGFDAILVSLTVMMVFFAIAKFIFFIVNWVVINK 102 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 + VLN + + +++ G K + + N + ++++ + ++ + Y L Sbjct: 103 V-VLNTKGIGFNLDKINPVNGFKNTLGFDAITNSFRKVLELVFLIFLLKYVF-DTYGVEL 160 Query: 175 DFIS--ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + + +NP +Y + + ++++++ + +D + +++ K +M+ E+K+E Sbjct: 161 NKLHKVSNPSFFVYDLVYYIGGASLLMVIYGICVGAVDFLFESYRFQKKNRMTMTEMKNE 220 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K + G+P+IK ++ R + M + R T + NPTH + + Y + AP+++ Sbjct: 221 MKDTEGSPLIKMERRHKMRELMNEPMTKG-RRPTFALANPTHILVPICYEPEIDQAPIVL 279 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARS-LFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + N +A R +PI E+ LAR L K + I FY+ +A +I + Sbjct: 280 SIYTNDMALGKRSYYESLGVPIIEDKPLARKILHKMKRGENYIDKEFYRDIALIIVALNR 339 Query: 352 KK 353 KK Sbjct: 340 KK 341 >gi|14422432|dbj|BAB60839.1| epaS1 [Escherichia coli] Length = 243 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 12/247 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + ++ I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYVVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK+++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232 Query: 249 IARSRIR 255 R RIR Sbjct: 233 --RERIR 237 >gi|148645122|gb|ABR01085.1| FlhB [uncultured Geobacter sp.] Length = 89 Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 57/86 (66%) Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE K S G+P +K +QK R +M + A +++TNPTHYA+AL+Y + + Sbjct: 1 QEVKDEHKNSEGDPAVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRFKM 60 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNI 312 APV++ KG + +A +++ +A E+N+ Sbjct: 61 AAPVVLFKGVDQMALQIKIVARENNV 86 >gi|254691438|ref|ZP_05154692.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str. 870] Length = 146 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 69/141 (48%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYS 141 ++P R+S +G +RI+ Sbjct: 121 ERIRPQASRISPLKGWQRIFG 141 >gi|304412856|ref|ZP_07394454.1| type III secretion exporter [Shewanella baltica OS183] gi|307306020|ref|ZP_07585765.1| type III secretion exporter [Shewanella baltica BA175] gi|304348773|gb|EFM13193.1| type III secretion exporter [Shewanella baltica OS183] gi|306910893|gb|EFN41320.1| type III secretion exporter [Shewanella baltica BA175] Length = 348 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/351 (22%), Positives = 155/351 (44%), Gaps = 31/351 (8%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57 N++ + K P+ KK+ + +G P + E +F+ I IY +F S + Sbjct: 3 NESTEPKKYPPTEKKLRELRKKGQFPKTELAEPTMELVVFAVIFIGTIYFVFDSSNDWFE 62 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V L+ +++ I+ +F+L + L+ + + S+++ V Sbjct: 63 VM--LYADISTGLDIIYTVIAWGIFILLMIKLAMAAI--------------SWVMLNKSV 106 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYFTM 173 +N + +++S G K I+ I + ++ +++I + + I E T Sbjct: 107 INTESLGLKMEKISPVTGAKNIFGIEAISRSLRKVLELIFLLFLLKYVFDIGGAE--LTR 164 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L I+ P+ I Y+ V V ++ ++ +L +D + + K +M+ E+K+E+ Sbjct: 165 LAQINNVPYFI-YNLMLYVGLVSLLFFVYGVSLGCVDFMAESYHFNHKNRMTFTEMKNEM 223 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G+P +K+ +K R + M + + T I NPTH + + Y + + PV++ Sbjct: 224 KETEGSPEMKSERKRQMREVMDAPMTKGRT-PTFAIANPTHILVPICYDRMIDKVPVVLK 282 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVA 343 A R+ NIPI E LAR+ +K + IP FY+ +A Sbjct: 283 ITTESFALDERRRLEALNIPILEHIGLARAFYKSMRTGEDYIPKEFYRHIA 333 >gi|327398785|ref|YP_004339654.1| type III secretion exporter [Hippea maritima DSM 10411] gi|327181414|gb|AEA33595.1| type III secretion exporter [Hippea maritima DSM 10411] Length = 83 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E++AP +VAKG+ +A K+ K A +H+I I ++P LA SL+K V +N IP Sbjct: 8 AVALRYKNQEDNAPKVVAKGRGFLADKIEKTAKKHSIYIEKDPLLAESLYK-VKLNEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ IY Sbjct: 67 EELYEAVAKILAYIY 81 >gi|197121152|ref|YP_002133103.1| type III secretion exporter [Anaeromyxobacter sp. K] gi|196171001|gb|ACG71974.1| type III secretion exporter [Anaeromyxobacter sp. K] Length = 343 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L+L + P +R+ G++R+ S L K ++ + L ++ Sbjct: 109 LSLAALAPRLERLDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALP 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P + L+ A + + + A L LD+ + L M++ E++ E ++ Sbjct: 169 RLGP-AALWRAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDE 227 Query: 238 GNPIIK-NRQKSIARSRIRHKMM---EATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 G+P+ + RQ+ RH+ + A +RAT+++ NPTH A+AL + + AP +VA Sbjct: 228 GDPLHRAERQR-------RHRALLEAPAVARATVVVVNPTHLAVALHHDRRGGGAPRVVA 280 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 KG A ++R A +P+ + +LAR+L + + IP Y+A A ++ +Y Sbjct: 281 KGAGEAAARIRSAARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLY 337 >gi|262274307|ref|ZP_06052118.1| type III secretion inner membrane protein HrpY [Grimontia hollisae CIP 101886] gi|262220870|gb|EEY72184.1| type III secretion inner membrane protein HrpY [Grimontia hollisae CIP 101886] Length = 344 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 82/361 (22%), Positives = 157/361 (43%), Gaps = 29/361 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54 M E+ P K P+ KK+ D +G P + E +F+ I+ +Y LF +S Sbjct: 1 MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTVIIILALYYLFEYSSE 58 Query: 55 IYS--VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 +S + +D+ V L S I + L L ++A V+ + +G + Sbjct: 59 WFSAILQADVQVGLDSGYDVLWWCIGGLALL--KLVMAAFEWVMINKAVVSTEALGLKMD 116 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 + PV N K F ++ +++I + L+ +K +V +L + + NY Sbjct: 117 KINPV---NGAKNIFGIEAISRSLRKILELLFLLFLLK-YVADVLGSKLYQLHEINNY-- 170 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 P+ I Y+ ++ + L+F + +D + + K +M+ E+K+E Sbjct: 171 --------PYFI-YYLMLSILAASVFYLIFGVCVGTVDFMAEKYHFMQKNRMTFTEMKNE 221 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K++ G+P IK +K R + + + R + NPTH + + Y PV++ Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPNFALANPTHILVPICYDPKIERVPVVL 280 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYH 351 +A + R +IPI E LAR+++ ++ +PP F++ VA +I ++ Sbjct: 281 KICTESLALEERSRLETMDIPIIENVPLARAIYTKMKQGEDFLPPEFFRDVAIIISRLKR 340 Query: 352 K 352 K Sbjct: 341 K 341 >gi|323388139|gb|ADX60335.1| type III secretion protein RscU [Pseudomonas fluorescens] Length = 365 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK---MMEATSRA 265 +D+ H + ++M++ E+ E K G+P +K +++++A+ + + + A Sbjct: 203 IDMALQKHFFAKSMRMTQVEVVKEYKDMEGDPHVKGQRRALAQQLAQEEPKVKLPKLEEA 262 Query: 266 TIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +++ NPTH+A+AL Y + P+LV KG + A+K+ A ++P+ + LAR+L+ Sbjct: 263 DMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAEARKLIDRAKAADVPVIQCVWLARTLY 322 Query: 326 KQVPINSAIPPVFYKAVA 343 ++ + + IP +AVA Sbjct: 323 EK-KLGANIPRETLQAVA 339 >gi|225849676|ref|YP_002729910.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] gi|225646306|gb|ACO04492.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] Length = 92 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + +NDAP +VAKGQ LIA+++ +IA E+ I I ++ L + + Q+ I IP Sbjct: 7 AVALRYDREKNDAPEVVAKGQGLIAERIVEIAREYGIEIKQDRELVQ-ILSQLDIKQEIP 65 Query: 336 PVFYKAVAQLIYKIY 350 P YKAVA+++ IY Sbjct: 66 PELYKAVAEILIFIY 80 >gi|323703510|ref|ZP_08115156.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574] gi|323531501|gb|EGB21394.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574] Length = 89 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY E+ APV+VA G+ +A + KIA EHNIP++++ LAR+L ++ + IP Sbjct: 9 AAALRYRHGEDAAPVVVAAGKGELAAAIEKIAREHNIPVYQDQHLARTL-TELGLGVEIP 67 Query: 336 PVFYKAVAQLIYKI 349 P Y+ VA+++ + Sbjct: 68 PELYEVVAKILVHV 81 >gi|312958831|ref|ZP_07773350.1| type III secretion system rscU [Pseudomonas fluorescens WH6] gi|311286601|gb|EFQ65163.1| type III secretion system rscU [Pseudomonas fluorescens WH6] Length = 365 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 128/250 (51%), Gaps = 14/250 (5%) Query: 102 FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161 +M FGI + +K FKR++ +K+++S +L+N + S K L+G + Sbjct: 105 WMQFGI---------LFAPETLKLDFKRLNPLSQLKQMFSAQSLMNLLMSIAKAFLLGLV 155 Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 + + + + +++ +++ S + R +L L + L ++D+ H + + Sbjct: 156 VYLVVWPSLGALINLATSDLQSYVLALIALFRYLLHACLGLLLVLALIDLVLQKHFFAKR 215 Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK---MMEATSRATIIITNPTHYALA 278 ++M++ E+ E K G+P +K +++S+A + + + A +++ NPTH+A+A Sbjct: 216 MRMTQVEVVKEYKDMEGDPHVKGQRRSLAYQLAQEEPKVKLPKLEEADMLVVNPTHFAVA 275 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 L Y + P+LV KG + A+++ A ++P+ + LAR+L+ + + IP Sbjct: 276 LYYRPGKTPLPLLVDKGTDAGARRLIARAKAADVPVIQCVWLARTLYTK-KRGANIPRET 334 Query: 339 YKAVAQLIYK 348 +AVA LIY+ Sbjct: 335 LQAVA-LIYR 343 >gi|147676798|ref|YP_001211013.1| flagellar protein FhlB cytoplasmic domain-containing protein [Pelotomaculum thermopropionicum SI] gi|146272895|dbj|BAF58644.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Pelotomaculum thermopropionicum SI] Length = 95 Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY +N APV+VA G+ L AKK+++IA + +P++++ +LAR+L + I IP Sbjct: 9 AAALRYEAGKNGAPVVVAAGRGLKAKKIKEIAEQAGVPVYQDEALARTL-HDLGIGVEIP 67 Query: 336 PVFYKAVAQLI 346 P Y+AVA+++ Sbjct: 68 PRLYQAVARIL 78 >gi|108762856|ref|YP_630671.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] gi|108466736|gb|ABF91921.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] Length = 94 Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +++ A+AL+Y + ++ AP +VAKG L A+K+R+IA EHNIP+ +LA +L++ V Sbjct: 1 MSDDAEIAIALKYDKEKDGAPRVVAKGMRLKAEKIREIAREHNIPLMRNVNLANALYR-V 59 Query: 329 PINSAIPPVFYKAVAQLIYKIY 350 + +P Y AVA+++ +Y Sbjct: 60 EVGQEVPEELYDAVAEVLNFVY 81 >gi|167841195|ref|ZP_02467879.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 250 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 10/142 (7%) Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISL 166 L+Q +L++ V P+F +++ +K I+S+ LV K+ VK+ VG +I ++L Sbjct: 105 LMQTKGLLSMKPVTPNFGKLNPINQLKSIFSLRTLVELAKNLVKVAAVGACTLVVIRVAL 164 Query: 167 TE-NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + +D SA ++ F + I +L+ L V+D+G+ +++ LKM+ Sbjct: 165 PDLAVVATVDLPSA--LNLTTSLLFRIATASIAVLV---ALAVIDVGYQRYEYIKGLKMT 219 Query: 226 KQEIKDEIKQSYGNPIIKNRQK 247 K E+K + KQ G+P++K ++ Sbjct: 220 KDEVKRDYKQQEGDPLVKGERR 241 >gi|157165363|ref|YP_001466488.1| FlhB domain-containing protein [Campylobacter concisus 13826] gi|112800644|gb|EAT97988.1| FlhB domain protein [Campylobacter concisus 13826] Length = 87 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 4/81 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +++++AP ++A G IA K+ +A EH+IPI E+P L L K V ++ IP Sbjct: 8 AVALGYNRSQDNAPKVLASGAGEIANKIISLAKEHDIPIKEDPDLIEILSK-VEVDQEIP 66 Query: 336 PVFYKAVAQL---IYKIYHKK 353 P YKAVA++ +YKI +KK Sbjct: 67 PNLYKAVAEIFSFLYKITNKK 87 >gi|315301909|ref|ZP_07872922.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596] gi|313629725|gb|EFR97845.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596] Length = 182 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 5/175 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L + LL+FF T V Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQGFVA 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L S+ +F + ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 61 LLKQPPNLASIESYSLFYIMEFG----KVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQN 171 >gi|289547861|ref|YP_003472849.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484] gi|289181478|gb|ADC88722.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484] Length = 87 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY Q ++ APV+VAKG +A+K+ ++A E+ +P+ E+P L +L V + IP Sbjct: 6 AVALRYHQEKDRAPVVVAKGMGDVAEKILQLAKEYGVPVVEDPQLVTALMG-VELLEEIP 64 Query: 336 PVFYKAVAQLI 346 P Y+AVAQ++ Sbjct: 65 PRLYRAVAQIL 75 >gi|197286514|ref|YP_002152386.1| type III secretion system protein [Proteus mirabilis HI4320] gi|227357588|ref|ZP_03841941.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis ATCC 29906] gi|194684001|emb|CAR45289.1| putative type III secretion system protein [Proteus mirabilis HI4320] gi|227162298|gb|EEI47302.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis ATCC 29906] Length = 353 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/329 (22%), Positives = 141/329 (42%), Gaps = 34/329 (10%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++D+ +G + S+E S L I +++ F+ Sbjct: 3 EKTEKPTQKKLDDSAKKGQSFKSKE---LVSGLVYFIGVIYLFN---------------- 43 Query: 69 ATQRKLEDISHIVFLL----THLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNH 122 Q KL++ + L T +SL + VI L ++ I ++L IP L +H Sbjct: 44 --QVKLDEFNQFYQSLLLHPTGISLKSYVEVISKLFFDIVLPIIIVTFLSGAIPSLFSSH 101 Query: 123 -------VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +K F ++ G K+I+SI + +F+K+ + II+ + + + ++ Sbjct: 102 FKLATEAIKIDFNHINPISGFKKIFSIRTIKDFLKTILFIIIFLITCYVFMILHMGEVVI 161 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 A+ ++ V + + + + +L+I + + + M K E+K E K Sbjct: 162 LYRADLEGVIDKWCSLVVSFIFIFFILSIPILILNIIADFFLFIKDMMMEKHEVKQEHKN 221 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 GNP IK+ ++ + + + M ++ +I NPTH A+ + + P++ Sbjct: 222 MEGNPEIKSVRRQLHQELLDEPMKRVIRDSSAVIVNPTHVAVGIYFDPDNGIMPIVSLSC 281 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 N A ++ A + P+ P LAR L Sbjct: 282 TNAKALAVKAYAKKVGTPVIRYPELARKL 310 >gi|330883669|gb|EGH17818.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] Length = 138 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%) Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS 252 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ ++ Sbjct: 3 RHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLSHE 62 Query: 253 RIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 + + A A +++ NPTHYA+AL Y E P++ KG++ Sbjct: 63 ILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGED 110 >gi|332798509|ref|YP_004460008.1| type III secretion exporter [Tepidanaerobacter sp. Re1] gi|332696244|gb|AEE90701.1| type III secretion exporter [Tepidanaerobacter sp. Re1] Length = 101 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y E++AP ++A G+ +IA+K+ ++A EHNI I+++P+L +L Q+ + IP Sbjct: 13 ATALKYNSAEDNAPKIIASGKGIIAEKILELAQEHNIAIYKDPALVEALV-QLEVGQEIP 71 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ IY Sbjct: 72 LELYQAVAEILAFIY 86 >gi|154175297|ref|YP_001407951.1| FlhB domain-containing protein [Campylobacter curvus 525.92] gi|112802155|gb|EAT99499.1| FlhB domain protein [Campylobacter curvus 525.92] Length = 87 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G IA K+ +A EH IPI E+P L L K V I+ IP Sbjct: 8 AVALGYNREKNSAPKVLATGSGEIANKIISLAREHEIPIKEDPDLIEILSK-VEIDQEIP 66 Query: 336 PVFYKAVAQL---IYKIYHKK 353 P YKAVA++ +YK+ +KK Sbjct: 67 PNLYKAVAEIFSFLYKVTNKK 87 >gi|299536764|ref|ZP_07050072.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1] gi|298727776|gb|EFI68343.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1] Length = 100 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L + L Q+ +N +IP Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA++ IY Sbjct: 70 EELYQAVAEVFAFIY 84 >gi|169827108|ref|YP_001697266.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41] gi|168991596|gb|ACA39136.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41] Length = 100 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L + L Q+ +N +IP Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA++ IY Sbjct: 70 EELYQAVAEVFAFIY 84 >gi|304415257|ref|ZP_07395954.1| putative type III secretion system protein [Candidatus Regiella insecticola LSR1] gi|304282883|gb|EFL91349.1| putative type III secretion system protein [Candidatus Regiella insecticola LSR1] Length = 385 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/275 (22%), Positives = 124/275 (45%), Gaps = 12/275 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++D+ +G + S++ I+ACLI Y ++ V L Sbjct: 4 NKTEKPTQKKLKDSAKKGQSFKSKDF-----IIACLI-----LCGAQYLISMGSFVELMG 53 Query: 69 ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPS 126 A +R + D + + T L ++ ++L +F L+Q V+ +K + Sbjct: 54 AYRRVIANDFDYDIHRYTTAVLWIGLQILLPIILLCVFASALPTLLQTGFVIATKALKFN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ +G K+I+S+ + +KS + + + + + P+ + Sbjct: 114 FGAINPAKGFKKIFSLRTAKDAVKSLLYLATFFISALLVWHNKKGLLFQQLHGTPYDMTV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ ++ L+ I + +LD + + LKM KQE K E+K+ GNP IK+++ Sbjct: 174 VWGELLQAIIFTCLVCIIIILILDALAEFFLYIKDLKMDKQEFKREMKEQDGNPEIKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 + + + ++ + II NPTH A+ + Y Sbjct: 234 RELHSELLSEQIKSDVKNSNFIIANPTHIAVGIYY 268 >gi|313673501|ref|YP_004051612.1| type iii secretion exporter [Calditerrivibrio nitroreducens DSM 19672] gi|312940257|gb|ADR19449.1| type III secretion exporter [Calditerrivibrio nitroreducens DSM 19672] Length = 87 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 ALRY Q ++ AP +VAKG+ +IA+K+ + A EHN+ I E+P L +L+K + I IP Sbjct: 9 ALRYDQEKDSAPKVVAKGRGIIAEKILEKAKEHNVLIKEDPDLLEALYK-LDIYQEIPEN 67 Query: 338 FYKAVAQLIYKIYH 351 Y+ VA+++ ++Y Sbjct: 68 LYRVVAEILSEVYR 81 >gi|258404776|ref|YP_003197518.1| hypothetical protein Dret_0648 [Desulfohalobium retbaense DSM 5692] gi|257797003|gb|ACV67940.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692] Length = 89 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++++DAP +VA GQ +A+++ A E ++P+ E+P L L QVP+ IP Sbjct: 9 AVALKYERSKDDAPRVVASGQGRLAERILATAEEADVPLREDPDLLEVL-AQVPVGDEIP 67 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ +Y Sbjct: 68 EDLYQAVAEILAFVY 82 >gi|115377833|ref|ZP_01465021.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca DW4/3-1] gi|310820311|ref|YP_003952669.1| type III secretion exporter family protein [Stigmatella aurantiaca DW4/3-1] gi|115365165|gb|EAU64212.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca DW4/3-1] gi|309393383|gb|ADO70842.1| Type III secretion exporter family protein [Stigmatella aurantiaca DW4/3-1] Length = 93 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y Q ++ AP +VAKG L A+K+R+IA ++NIP+ + LA +L++ V + +P Sbjct: 8 AIALKYDQNKDSAPRVVAKGMRLKAEKIREIAKQYNIPVMKNLPLASALYR-VDVGQEVP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y AVA+++ +Y Sbjct: 67 EELYDAVAEVLNFVY 81 >gi|71906417|ref|YP_284004.1| flagellar biosynthetic protein [Dechloromonas aromatica RCB] gi|71846038|gb|AAZ45534.1| possible flagellar biosynthetic protein [Dechloromonas aromatica RCB] Length = 93 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 5/85 (5%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 ++PT A+AL Y QT+ AP +VAKG+ LIA+++ A EH + + E P L +L QV Sbjct: 6 SDPTREAIALAYSQTDA-APRVVAKGKGLIAEQIIARAKEHGVYVHESPELV-ALLTQVD 63 Query: 330 INSAIPPVFYKAVAQL---IYKIYH 351 ++ IPP Y A+A+L +Y+I H Sbjct: 64 LDEHIPPQLYIAIAELLAWLYRIEH 88 >gi|307721269|ref|YP_003892409.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979362|gb|ADN09397.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM 16294] Length = 85 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N APV+ AKG+ A+K+ KIA EH +PI ++ L L +V +N +P Sbjct: 5 AVALTYDKEKNRAPVISAKGKGTTAQKIIKIAKEHGVPIKKDEDLI-ELLSKVELNKEVP 63 Query: 336 PVFYKAVAQLIYKIY 350 P YKA+A++ IY Sbjct: 64 PQMYKAIAEVFSFIY 78 >gi|256024634|ref|ZP_05438499.1| surface presentation of antigens protein SpaS [Escherichia sp. 4_1_40B] gi|300950611|ref|ZP_07164513.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 116-1] gi|300958192|ref|ZP_07170346.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 175-1] gi|300315144|gb|EFJ64928.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 175-1] gi|300450091|gb|EFK13711.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 116-1] gi|309703219|emb|CBJ02554.1| type III secretion system protein [Escherichia coli ETEC H10407] gi|323935780|gb|EGB32083.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1520] Length = 243 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 12/247 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + +K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK+++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232 Query: 249 IARSRIR 255 R RIR Sbjct: 233 --RERIR 237 >gi|126654068|ref|ZP_01725894.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905] gi|126589448|gb|EAZ83595.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905] Length = 100 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L L Q+ +N +IP Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVH-LLGQLDLNESIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA++ IY Sbjct: 70 EELYQAVAEVFAFIY 84 >gi|124516284|gb|EAY57792.1| probable flagellar biosynthesis protein [Leptospirillum rubarum] Length = 100 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E+DAPV++A GQ+ IA+K+ +IA E+ IP+ P LA L + VP IP Sbjct: 11 AIALGYHPEEDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAELLIR-VPPGHPIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA L+ +Y Sbjct: 70 AELYQAVALLLAYLY 84 >gi|268678710|ref|YP_003303141.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM 6946] gi|268616741|gb|ACZ11106.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM 6946] Length = 92 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 4/87 (4%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T+ T A+AL+Y + + AP +VA G+ +A + K+A EH+I I ++ L L ++ Sbjct: 5 TSKTQKAVALKYDREKQGAPKVVASGKGEVANNIIKLAQEHDIFIKKDADLVE-LLSKIE 63 Query: 330 INSAIPPVFYKAVAQL---IYKIYHKK 353 IN IPP+ YKAVA++ IYKI + K Sbjct: 64 INKEIPPMLYKAVAEVFSFIYKITNDK 90 >gi|229529200|ref|ZP_04418590.1| Type III secretion inner membrane protein [Vibrio cholerae 12129(1)] gi|229332974|gb|EEN98460.1| Type III secretion inner membrane protein [Vibrio cholerae 12129(1)] Length = 350 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 78/367 (21%), Positives = 162/367 (44%), Gaps = 39/367 (10%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54 M E+ P K P+ KK+ D +G P + E +F+ I+ +Y LF +S Sbjct: 1 MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIFTLYYLFEYSGE 58 Query: 55 IYSVT--SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112 S +D+ V LA+ + + + + L+L L ++ I +++ Sbjct: 59 WLSAVLYADIDVGLATG-------VDVLWWCIGGLAL-----------LKLVMAIFEWVM 100 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SLT 167 V++ + +++ G K I+ + + +SF K++ + ++ + + Sbjct: 101 INKAVISTEALGLKMDKINPVNGAKNIFGVEAI---SRSFRKVLELLFLLFLLKYVADVL 157 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + L+ I+ P+ I Y+ ++V L++ + +D + + K +M+ Sbjct: 158 GSQLYQLNEINNYPYFI-YYLMYSVGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFT 216 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+K+E+K++ G+P IK +K R + + + R T + NPTH + + Y Sbjct: 217 EMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIER 275 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346 PV++ +A + RK +IPI E LAR+++ ++ +P F++ VA +I Sbjct: 276 VPVVLKICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVII 335 Query: 347 YKIYHKK 353 + +K Sbjct: 336 SNLKRQK 342 >gi|307944387|ref|ZP_07659728.1| putative secretion system apparatus protein SsaU [Roseibium sp. TrichSKD4] gi|307772733|gb|EFO31953.1| putative secretion system apparatus protein SsaU [Roseibium sp. TrichSKD4] Length = 259 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/272 (23%), Positives = 126/272 (46%), Gaps = 23/272 (8%) Query: 89 LSASRLVIPGLLLFMMFGI-GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 +S +V+P ++L + F + S ++ + V + +KP F +++ G+K I+ + L Sbjct: 1 MSDGYIVLPIMMLVIFFSVLASIMMTQGFVFSTERMKPDFNKLNPANGLKNIFGLQALKT 60 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPH-----SILYHAFFTVRKVLIMILLF 202 + +++ GTI+ + YF F+S S+ +F V L+++ + Sbjct: 61 ALMHVLRLSFSGTILIFLIY--YFVPTVFLSPYCELDCGISVNATVYFYVLLALLILSII 118 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262 A ++D ++ + KM+ E K E K+ GNP IK R K I + + + Sbjct: 119 FA---MIDFVVQRSEFLRQNKMTDTEQKQEKKEQLGNPEIKGRIKEIQQEVVTKTV--GM 173 Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAK--GQNLIAKKMRKIAYEHNIPIFEEPSL 320 A+ I+ + A+A+RY+ + P +VAK G+N + ++A E P+ E + Sbjct: 174 RNASFIVADGLKQAVAIRYVPGGEEMPTIVAKARGRNAVL----RLASESGKPV-EHSAE 228 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +L K++ + P+ +A + + HK Sbjct: 229 LLALVKKIGVGD---PIMDEAAVKHLVPFLHK 257 >gi|114566998|ref|YP_754152.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337933|gb|ABI68781.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 89 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY +++ PV+VAKGQ IA+K++K+A E +PI E+ LA L + + IP Sbjct: 9 AVALRYDMEKDEVPVVVAKGQGFIAEKIKKVARESGVPIKEDRELADYLMA-LDLYEEIP 67 Query: 336 PVFYKAVAQLIYKIY 350 P Y VA+++ IY Sbjct: 68 PELYAVVAEILAFIY 82 >gi|238759386|ref|ZP_04620551.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236] gi|238702413|gb|EEP94965.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236] Length = 240 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 60/113 (53%) Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 LKM KQE+K E K + G+P IK+ ++ + + + ++ +T I+ NPTH A+A+ + Sbjct: 74 LKMEKQEVKKEHKDNDGDPHIKSARRGLHQELLSEEVKANVRDSTFIMANPTHIAMAIYF 133 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 P ++ K + L AK + A +P+ + LAR L++ +S I Sbjct: 134 NTDIAPLPFIMMKTKGLQAKAVVAYAESQGVPVVRDIPLARQLWRHYRKDSFI 186 >gi|153215439|ref|ZP_01950023.1| VcsU2 [Vibrio cholerae 1587] gi|153827954|ref|ZP_01980621.1| VcsU2 [Vibrio cholerae 623-39] gi|124114733|gb|EAY33553.1| VcsU2 [Vibrio cholerae 1587] gi|148876535|gb|EDL74670.1| VcsU2 [Vibrio cholerae 623-39] Length = 346 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 3/181 (1%) Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ I+ P+ I Y+ +++ V + L++ + +D + ++ K +M+ E+K+E+ Sbjct: 163 LNEINNYPYFI-YYLLYSIGAVSLFYLVYGVCIGSVDYLAEKYHFHQKNRMTFTEMKNEL 221 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G+P IK ++ + ++ + T + NPTH + + Y PV++ Sbjct: 222 KETEGSPEIK-YERRRRMREVMKTPVKKGRKPTFALANPTHILVPIYYDPKVEKIPVVLK 280 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYHK 352 +A RK E IPI E LARSL++++ +P FY+ VA +I + + Sbjct: 281 ISTESLALAERKRLEEQGIPIIENIPLARSLYRKMKSGEDFLPKEFYRDVAVIISTLNRQ 340 Query: 353 K 353 K Sbjct: 341 K 341 >gi|288553079|ref|YP_003425014.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4] gi|288544239|gb|ADC48122.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4] Length = 91 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + D+P ++AKG+ +IA+++ + A H+IPI E+ SL L Q+ IN IP Sbjct: 9 AVALRYDAAKQDSPEVIAKGKGIIAEEIIEKAKNHHIPIQEDASLVE-LLSQLNINQTIP 67 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ VA++ IY Sbjct: 68 PELYEVVAEVFAFIY 82 >gi|301643802|ref|ZP_07243839.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 146-1] gi|301077835|gb|EFK92641.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 146-1] Length = 243 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 12/247 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLVTEAVKFKLD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + +K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSGW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK+++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232 Query: 249 IARSRIR 255 R RIR Sbjct: 233 --RERIR 237 >gi|229515162|ref|ZP_04404622.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21] gi|254285284|ref|ZP_04960249.1| VcsU2 [Vibrio cholerae AM-19226] gi|71480619|gb|AAZ32241.1| VcsU2 [Vibrio cholerae non-O1/non-O139] gi|150424556|gb|EDN16492.1| VcsU2 [Vibrio cholerae AM-19226] gi|229347867|gb|EEO12826.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21] Length = 350 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 79/368 (21%), Positives = 160/368 (43%), Gaps = 41/368 (11%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54 M E+ P K P+ KK+ D +G P + E +F+ I+ +Y LF +S Sbjct: 1 MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIFTLYYLFEYSGE 58 Query: 55 IYSVT--SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYL 111 S +D+ V LA+ + I GL LL ++ I ++ Sbjct: 59 WLSAVLYADIDVGLATG-------------------VDVLWWCIGGLALLKLVMAIFEWV 99 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SL 166 + V++ + +++ G K I+ + + +SF K++ + ++ + + Sbjct: 100 MINKAVISTEALGLKMDKINPVNGAKNIFGVEAI---SRSFRKVLELLFLLFLLKYVADV 156 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 + L+ I+ P+ I Y+ +++ L++ + +D + + K +M+ Sbjct: 157 LGSQLYQLNEINNYPYFI-YYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTF 215 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 E+K+E+K++ G+P IK +K R + + + R T + NPTH + + Y Sbjct: 216 TEMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIE 274 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQL 345 PV++ +A + RK +IPI E LAR+++ ++ +P F++ VA + Sbjct: 275 RVPVVLKICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVI 334 Query: 346 IYKIYHKK 353 I + +K Sbjct: 335 ISNLKRQK 342 >gi|218672785|ref|ZP_03522454.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56] Length = 124 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 36/47 (76%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF 50 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF Sbjct: 3 DDDKDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFF 49 >gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacterium sp. Marseille] gi|151283317|gb|ABR91727.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 95 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+AL Y Q+ + AP +VAKG+ IA+++ + A EH + I E L +L QV Sbjct: 4 TTPPQQAVALAY-QSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELV-ALLLQVE 61 Query: 330 INSAIPPVFYKAVAQLIYKIY 350 ++ IPP Y+AVA+L+ +Y Sbjct: 62 LDEHIPPALYRAVAELLAWLY 82 >gi|167463786|ref|ZP_02328875.1| FlhB domain protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382570|ref|ZP_08056450.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153486|gb|EFX45891.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 110 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A+AL+Y + APV++AKG IA+ + A EH IP+ E+PSL L K + + Sbjct: 15 NSLKKAVALKYNPGQGQAPVVIAKGTGKIAEDILSKAEEHGIPVQEDPSLVEVLSK-LDL 73 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 + IPP Y+ VA+++ IY Sbjct: 74 DQEIPPELYQLVAEILTFIY 93 >gi|117926314|ref|YP_866931.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus sp. MC-1] gi|117610070|gb|ABK45525.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus sp. MC-1] Length = 100 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++ +P + A G+ +A+ + K A E ++P+ E+P L L +++P+ S +P Sbjct: 16 AVALRYRLGKDTSPRVTASGRGRLAETILKRAKEGDVPLLEDPDLVH-LLEKIPVGSEVP 74 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ IY Sbjct: 75 PQLYQAVAEVLAYIY 89 >gi|226313194|ref|YP_002773088.1| hypothetical protein BBR47_36070 [Brevibacillus brevis NBRC 100599] gi|226096142|dbj|BAH44584.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 96 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +AP +VAKG+ +A + K A EH+IP+ E+PSL L K + ++ IP Sbjct: 14 AVALKYQAGTMEAPKVVAKGKGYVADNILKTAKEHDIPVQEDPSLVEVLGK-LDLDQQIP 72 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ VA+++ +Y Sbjct: 73 PELYQVVAEILAFVY 87 >gi|121533785|ref|ZP_01665612.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus carboxydivorans Nor1] gi|121307776|gb|EAX48691.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus carboxydivorans Nor1] Length = 96 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY Q AP +VAKG +A+++ A +H +P++++ +LA SL V ++ IP Sbjct: 12 AIALRYDQQTQQAPKVVAKGSGYVAEQILATAAQHAVPVYKDTALA-SLLMAVELDKEIP 70 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ VA+++ IY Sbjct: 71 PELYQVVAEVLAYIY 85 >gi|206603123|gb|EDZ39603.1| Probable flagellar biosynthesis protein [Leptospirillum sp. Group II '5-way CG'] Length = 100 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A+AL Y ++DAPV++A GQ+ IA+K+ +IA E+ IP+ P LA L + VP Sbjct: 6 NKGSIAIALGYHPEKDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAEFLIR-VPP 64 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y+AVA L+ +Y Sbjct: 65 GHPIPAELYQAVALLLAYLY 84 >gi|323166469|gb|EFZ52233.1| surface presentation of antigens protein spaS [Shigella sonnei 53G] Length = 250 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 16/224 (7%) Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 L+Q VL +K F ++ +G+K+I+SI + F KS + +I ++LT + Sbjct: 5 LVQTKFVLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKS------ILLLIILALTTYF 58 Query: 171 FTMLD--------FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 F + D F S + +++ F + +++ L F + +LD + + + Sbjct: 59 FWINDRKIIFSQVFSSVDGLYLIWGGLF--KDIILFFLAFSIFVIILDFVIEFILYMKDM 116 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 M KQEIK E + G+ K+R++ + + + + +++ NPTH A+ + + Sbjct: 117 MMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFN 176 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 AP + N A +RK A E IP + LAR L+K Sbjct: 177 PEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYK 220 >gi|167630262|ref|YP_001680761.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167593002|gb|ABZ84750.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 99 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + + AP ++A G+ +A+K+ +IA E IP++E+P+L + L ++ + IP Sbjct: 15 AVALRYDPSADAAPKVIATGKGHLARKILEIAREKEIPVYEDPTLVQ-LLSKLDLGVEIP 73 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ VA+++ +Y Sbjct: 74 PELYRMVAEVLAFVY 88 >gi|327441069|dbj|BAK17434.1| uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Solibacillus silvestris StLB046] Length = 97 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ P +VAKG+ IA+ + + A H +P++E+P+L L Q+ +N++IP Sbjct: 11 AIALSYDPQKSSGPTIVAKGKGKIAENILEKAAMHEVPVYEDPNLVE-LLGQLDLNTSIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 Y+AVA++ IYH Sbjct: 70 EELYQAVAEVFAFIYH 85 >gi|254224928|ref|ZP_04918543.1| Type III secretory pathway, component EscU [Vibrio cholerae V51] gi|125622616|gb|EAZ50935.1| Type III secretory pathway, component EscU [Vibrio cholerae V51] Length = 350 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 78/368 (21%), Positives = 161/368 (43%), Gaps = 41/368 (11%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54 M E+ P K P+ KK+ D +G P + E +F+ I+ +Y LF +S Sbjct: 1 MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIFTLYYLFEYSGE 58 Query: 55 IYSVT--SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYL 111 S +D++V LA+ + I GL LL ++ I ++ Sbjct: 59 WLSAVLYADIYVGLATG-------------------VDVLWWCIGGLALLKLVMVIFEWV 99 Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SL 166 + V++ + +++ G K I+ + + +SF K++ + ++ + + Sbjct: 100 MINKAVISTEALGLKMDKINPVNGAKNIFGVEAI---SRSFRKVLELLFLLFLLKYVADV 156 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 + L+ I+ P+ I Y+ +++ L++ + +D + + K +M+ Sbjct: 157 LGSQLYQLNEINNYPYFI-YYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTF 215 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 E+K+E+K++ G+P IK +K R + + + R T + NPTH + + Y Sbjct: 216 TEMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIE 274 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQL 345 PV++ +A + RK +IPI E LAR+++ ++ +P F++ +A + Sbjct: 275 RVPVVLKICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDIAVI 334 Query: 346 IYKIYHKK 353 I + +K Sbjct: 335 ISNLKRQK 342 >gi|213021563|ref|ZP_03336010.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 243 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 23/251 (9%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54 Query: 69 ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122 + L+ ++ + LT LS A + LLF+ G+ GS +Q V+ Sbjct: 55 SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P+ Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169 Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 L V ++ + ++ F + +LD + Y++ LKMSK ++K E K G Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229 Query: 239 NPIIKNRQKSI 249 +P +K R++ + Sbjct: 230 DPQMKTRRREM 240 >gi|257092546|ref|YP_003166187.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045070|gb|ACV34258.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 108 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 TNP A+AL Y QT+ AP +VAKG+ L+A+++ A+EH + + E L SL QV Sbjct: 6 TNPLKNAVALAYSQTDA-APRVVAKGRGLVAEQIIARAHEHGVYVHESAELV-SLLLQVD 63 Query: 330 INSAIPPVFYKAVAQLIYKIY 350 ++ IPP Y AVA+L+ +Y Sbjct: 64 LDQHIPPQLYLAVAELLAWLY 84 >gi|296132572|ref|YP_003639819.1| type III secretion exporter [Thermincola sp. JR] gi|296031150|gb|ADG81918.1| type III secretion exporter [Thermincola potens JR] Length = 100 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y DAP +VA GQ L+A+ + ++A E+NIPI E+P L +L + + + IP Sbjct: 19 AVALEYKPGLQDAPQVVATGQGLVAENIVRLAKEYNIPIEEDPVLVDAL-RVLQLGEEIP 77 Query: 336 PVFYKAVAQLI 346 P Y+ VA+++ Sbjct: 78 PELYRVVAEIL 88 >gi|302390418|ref|YP_003826239.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646] gi|302201046|gb|ADL08616.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646] Length = 96 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL+Y ++ AP +VA G+ A+++ + A EH IP+ +P LA +L V + Sbjct: 8 PQRKAVALKYDPEKDGAPRVVASGRGETAERIIQTAKEHGIPLHTDPELAGALL-SVEVG 66 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IPP Y+AVA+++ IY Sbjct: 67 LEIPPELYRAVAEILAFIY 85 >gi|329915167|ref|ZP_08276222.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] gi|327544973|gb|EGF30311.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] Length = 97 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 +P A+AL Y Q+ + AP +VAKG+ LIA ++ + A EH + + E L +L QV + Sbjct: 6 SPLKNAVALAY-QSGDAAPKIVAKGRGLIATQIIERAKEHGVFVHESKELV-ALLMQVDL 63 Query: 331 NSAIPPVFYKAVAQLIYKIYH 351 + IPP Y+A+A+L+ +YH Sbjct: 64 DGQIPPALYRAIAELLAWLYH 84 >gi|242309108|ref|ZP_04808263.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT 98-5489] gi|239524149|gb|EEQ64015.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT 98-5489] Length = 92 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+ +L SL + I+ Sbjct: 5 PPQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLI-HLEID 63 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IPP YKAV ++ +Y Sbjct: 64 EEIPPELYKAVVEVFIWLY 82 >gi|224436936|ref|ZP_03657917.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313143408|ref|ZP_07805601.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313128439|gb|EFR46056.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] Length = 91 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++AP +VAKGQN IA K+ A E ++P+F P L +SL Q+P++S IP Sbjct: 6 AVALAYNAEFDNAPRVVAKGQNDIALKIIAKAKEFDVPLFSNPLLVQSLL-QIPLDSHIP 64 Query: 336 PVFYKAVAQL 345 P Y AV ++ Sbjct: 65 PEMYNAVVEV 74 >gi|134095072|ref|YP_001100147.1| putative part of export apparatus for flagellar proteins (partial) [Herminiimonas arsenicoxydans] Length = 97 Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y Q+ + AP +VAKG+ LIA+++ + A EH + I E L +L QV ++ Sbjct: 9 PPPSAVALAY-QSGDSAPRIVAKGRGLIAEQIIERAKEHGVAIHESKELV-ALLLQVELD 66 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IPP Y+AVA+L+ +Y Sbjct: 67 DNIPPALYRAVAELLAWLY 85 >gi|221271473|dbj|BAH15025.1| putative type III secretion system apparatus protein VscU2 [Vibrio parahaemolyticus] gi|328469635|gb|EGF40571.1| putative type III secretion system EscU protein [Vibrio parahaemolyticus 10329] Length = 346 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 3/181 (1%) Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ I+ P+ I Y+ +++ V + L++ + +D + ++ K +M+ E+K+E+ Sbjct: 163 LNEINNYPYFI-YYLLYSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNEL 221 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G+P IK ++ R + + + + T + NPTH + + Y PV++ Sbjct: 222 KETEGSPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLK 280 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYHK 352 +A RK E IPI E LARSL++ + +P FY+ VA +I + + Sbjct: 281 ISTESLALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQ 340 Query: 353 K 353 K Sbjct: 341 K 341 >gi|167950811|ref|ZP_02537885.1| FlhB domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 94 Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++AP L AKG+ +A+++ IA EHNIP+ ++ L+ +L Q+P+ IP Sbjct: 12 AIALNY--DGSNAPRLTAKGRGAVAEQILSIAKEHNIPLHQDTELS-ALLAQIPLGDEIP 68 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA++I Y Sbjct: 69 EALYRAVAEVIAFAY 83 >gi|224419116|ref|ZP_03657122.1| hypothetical protein HcanM9_07572 [Helicobacter canadensis MIT 98-5491] gi|253828052|ref|ZP_04870937.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142623|ref|ZP_07804816.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT 98-5491] gi|253511458|gb|EES90117.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131654|gb|EFR49271.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT 98-5491] Length = 93 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 + A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+ +L SL + I+ Sbjct: 6 SQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLI-HLEIDE 64 Query: 333 AIPPVFYKAVAQLIYKIY 350 IPP YKAV ++ +Y Sbjct: 65 EIPPDLYKAVVEVFIWLY 82 >gi|325294769|ref|YP_004281283.1| type III secretion exporter [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065217|gb|ADY73224.1| type III secretion exporter [Desulfurobacterium thermolithotrophum DSM 11699] Length = 88 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 4/81 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L+Y + +++AP +VAKG+ ++A+++ ++A +HNIPI E+ L L K + I IP Sbjct: 5 AVVLKYNKAKDNAPKVVAKGEGILAERILELAQKHNIPIVEDKELVSFLLK-LNIGEEIP 63 Query: 336 PVFYKAVAQLI---YKIYHKK 353 P YK +A+++ Y + H++ Sbjct: 64 PTLYKIIAKILSYAYNVIHQE 84 >gi|220915853|ref|YP_002491157.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] gi|219953707|gb|ACL64091.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] Length = 343 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 4/233 (1%) Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L+ + P +R+ G++R+ S L K ++ + L ++ Sbjct: 109 LSFAALAPRLERIDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALP 168 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 P + L+ A + + + A L LD+ + L M++ E++ E ++ Sbjct: 169 RLGP-AALWRAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDE 227 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P+ + ++ R+ + + T+++ NPTH A+AL++ + AP +VAKG Sbjct: 228 GDPLHRAARQRRHRALLEAPAVARA---TVVVVNPTHLAVALQHDRRGGGAPRVVAKGAG 284 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A ++R A +P+ + +LAR+L + + IP Y+A A ++ +Y Sbjct: 285 EAAARIRSAARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLY 337 >gi|27380472|ref|NP_772001.1| hypothetical protein bsl5361 [Bradyrhizobium japonicum USDA 110] gi|27353636|dbj|BAC50626.1| bsl5361 [Bradyrhizobium japonicum USDA 110] Length = 87 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +++P+ A+AL Y + + APV+VAKG+ I +K+ +IA ++IPI E LA +L K V Sbjct: 1 MSDPSKLAIALHY-EKGSGAPVVVAKGKGTIGEKIVEIAKANDIPIEENEILAGALSK-V 58 Query: 329 PINSAIPPVFYKAVAQLI 346 + IPP YKAVA+++ Sbjct: 59 ELGEEIPPDLYKAVAEVL 76 >gi|116328316|ref|YP_798036.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331042|ref|YP_800760.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121060|gb|ABJ79103.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124731|gb|ABJ76002.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 90 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL++I +++APV+ A L+ +RKIA ++++P+ E+ LA SLF ++P+ S IP Sbjct: 3 SVALKFIPQKDNAPVITASASGLLGDVIRKIANKNSVPVVEDSVLAESLF-ELPVGSEIP 61 Query: 336 PVFYKAVAQLIYKIYH 351 Y+AV + I Sbjct: 62 ENLYRAVGAIFSMILE 77 >gi|258511352|ref|YP_003184786.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478078|gb|ACV58397.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 85 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++ AP +VAKG +AK + + A H +P+ E+ L +LF + ++ IP Sbjct: 7 AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ IY Sbjct: 66 PELYQAVAEILAYIY 80 >gi|188586969|ref|YP_001918514.1| flagellar biosynthesis protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351656|gb|ACB85926.1| flagellar biosynthesis protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 96 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 272 PTHY--ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 P H+ A AL+Y Q +N AP L+A GQ L+A ++ + A E I I+++P LA +L Q+ Sbjct: 5 PKHFKRAAALKYDQDKNQAPQLIAAGQGLVADEIIRRAEEEGIYIYQDPELANTL-SQLS 63 Query: 330 INSAIPPVFYKAVAQLI 346 + IP Y+ VA+++ Sbjct: 64 LYQEIPEELYQGVAEVL 80 >gi|254517031|ref|ZP_05129089.1| FlhB domain protein [gamma proteobacterium NOR5-3] gi|219674536|gb|EED30904.1| FlhB domain protein [gamma proteobacterium NOR5-3] Length = 96 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH A AL Y + AP+LVAKG+N IA ++ ++A E+ +PI ++ L L Q+P+ Sbjct: 13 THSA-ALSY--SGEGAPLLVAKGENAIADRIVELAAENGVPIVQDAQLTE-LLCQIPLGD 68 Query: 333 AIPPVFYKAVAQLIYKIY 350 +PP Y AVA+++ +Y Sbjct: 69 EVPPALYVAVAEVLAYVY 86 >gi|218288274|ref|ZP_03492573.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius LAA1] gi|218241633|gb|EED08806.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius LAA1] Length = 85 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++ AP +VAKG +AK + + A H +P+ E+ L +LF + ++ IP Sbjct: 7 AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ IY Sbjct: 66 PELYQAVAEILAYIY 80 >gi|134298145|ref|YP_001111641.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1] gi|134050845|gb|ABO48816.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1] Length = 90 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY ++ AP +VA G+ +A + ++A EHNIP++ + +LA +L ++ + + IP Sbjct: 9 AAALRYHHGKDHAPTVVAVGKGDLATAIERLATEHNIPLYRDETLAHTL-TELGLGTEIP 67 Query: 336 PVFYKAVAQLIYKI 349 P Y+AVA+++ + Sbjct: 68 PELYEAVAKILIHV 81 >gi|88704263|ref|ZP_01101977.1| FlhB domain protein [Congregibacter litoralis KT71] gi|88701314|gb|EAQ98419.1| FlhB domain protein [Congregibacter litoralis KT71] Length = 100 Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M + R+ P + AL Y + AP+LVAKG+N IA ++ ++A ++++PI ++ Sbjct: 1 MSDNDKRSQSSAKGPATQSAALSY--SGEGAPLLVAKGENAIADRIVELASQNDVPIVQD 58 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 L L Q+P+ +PP Y AVA+++ +Y Sbjct: 59 GQLTE-LLCQIPLGEEVPPELYLAVAEVLAYVY 90 >gi|297617102|ref|YP_003702261.1| type III secretion exporter [Syntrophothermus lipocalidus DSM 12680] gi|297144939|gb|ADI01696.1| type III secretion exporter [Syntrophothermus lipocalidus DSM 12680] Length = 92 Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++APV+ AKG+ L+A+K+ ++A E +PI E+P L L + I IP Sbjct: 11 AVALRYDPEIHEAPVVTAKGRGLLAEKIIELARESGVPIKEDPQLVEYL-AMLDIYQEIP 69 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ VA+++ +Y Sbjct: 70 PELYQVVAEILAFVY 84 >gi|295399795|ref|ZP_06809776.1| type III secretion exporter [Geobacillus thermoglucosidasius C56-YS93] gi|312111693|ref|YP_003990009.1| type III secretion exporter [Geobacillus sp. Y4.1MC1] gi|294978198|gb|EFG53795.1| type III secretion exporter [Geobacillus thermoglucosidasius C56-YS93] gi|311216794|gb|ADP75398.1| type III secretion exporter [Geobacillus sp. Y4.1MC1] Length = 92 Score = 56.6 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + N A+AL Y ++APV+VAKG+ +A+ + A +H IPI E+PSL + L ++ Sbjct: 1 MKNEKKQAVALSYDANIHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSEL 59 Query: 329 PINSAIPPVFYKAVAQLIYKIY 350 IN IP Y+ VA++ IY Sbjct: 60 EINEVIPEDLYRLVAEVFAFIY 81 >gi|239826600|ref|YP_002949224.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] gi|239806893|gb|ACS23958.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] Length = 90 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + N A+AL Y ++APV+VAKG+ +A+ + A +H IPI E+PSL + L ++ Sbjct: 1 MKNKEKQAVALSYDSNVHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSEL 59 Query: 329 PINSAIPPVFYKAVAQLIYKIY 350 IN IP Y VA+L IY Sbjct: 60 EINETIPEDLYYLVAELFAFIY 81 >gi|297570293|ref|YP_003691637.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2] gi|296926208|gb|ADH87018.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2] Length = 104 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+ALRY + AP +VAKG +A+K+ IA EH +PI E+ L + ++ Sbjct: 18 TPPRKKAVALRYDAEQQSAPQMVAKGSGTVAEKLIAIAREHGVPIHEDADLTE-ILSRLD 76 Query: 330 INSAIPPVFYKAVAQLIYKIY 350 + IPP Y VA+++ IY Sbjct: 77 LYQEIPPETYLLVAEILAFIY 97 >gi|213855713|ref|ZP_03383953.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 93 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG LIA ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 1 AKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 60 Query: 353 K 353 K Sbjct: 61 K 61 >gi|253573505|ref|ZP_04850848.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847033|gb|EES75038.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 101 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +APV+VAKG+ LIA ++ A EH IPI E+ +L L K + ++ IP Sbjct: 15 AVALKYDPGQGEAPVVVAKGKGLIADRILDAALEHGIPIQEDAALVEVLSK-LDLDQQIP 73 Query: 336 PVFYKAVAQLIYKIY 350 Y VA+++ IY Sbjct: 74 AELYDLVAEILTFIY 88 >gi|223039449|ref|ZP_03609737.1| FlhB domain protein [Campylobacter rectus RM3267] gi|222879245|gb|EEF14338.1| FlhB domain protein [Campylobacter rectus RM3267] Length = 89 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 4/84 (4%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y + +++AP ++A G +AK + +A H+IPI E+ L L K V +N Sbjct: 7 TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLVEILSK-VDLNE 65 Query: 333 AIPPVFYKAVAQL---IYKIYHKK 353 +PP YKAVA++ +Y++ +KK Sbjct: 66 EVPPNLYKAVAEIFNFLYRMTNKK 89 >gi|319789483|ref|YP_004151116.1| type III secretion exporter [Thermovibrio ammonificans HB-1] gi|317113985|gb|ADU96475.1| type III secretion exporter [Thermovibrio ammonificans HB-1] Length = 92 Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + + AP +VAKG+ ++A+K+ +IA +P+ + L L QV + + IP Sbjct: 6 AAALKYERGKMRAPRVVAKGEGVVAEKIVEIARRSGVPVLQNRGLVEFLL-QVDLGAEIP 64 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+L+ +Y Sbjct: 65 PELYRAVAELLAYVY 79 >gi|15615036|ref|NP_243339.1| flagellar biosynthesis [Bacillus halodurans C-125] gi|10175093|dbj|BAB06192.1| flagellar biosynthesis [Bacillus halodurans C-125] Length = 92 Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+RY + + AP ++ KG+ L+A ++ K A E +PI ++PSL L Q+ IN IP Sbjct: 10 AVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVE-LLGQLEINETIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+L IY Sbjct: 69 EELYEVVAELFAFIYQ 84 >gi|149376614|ref|ZP_01894374.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter algicola DG893] gi|149359132|gb|EDM47596.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter algicola DG893] Length = 100 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y APV+ A G + +A+++ +IA EHN+P++E P LA S+ ++ +N IP Sbjct: 13 AVALKY--DGERAPVIAASGTHELAEEIIRIAREHNVPLYENPELA-SILARLELNDEIP 69 Query: 336 PVFYKAVAQLI 346 Y+ VA+++ Sbjct: 70 ETLYRVVAEIL 80 >gi|319649580|ref|ZP_08003736.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2] gi|317398742|gb|EFV79424.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2] Length = 98 Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP + AKG+ L+A+ + A EH+IP+ E+P+L L ++ IN IP Sbjct: 12 AVALTYDPVNQGAPRISAKGKGLVAENILVKAKEHDIPVQEDPALVE-LLGKLNINEGIP 70 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA++ IY Sbjct: 71 EELYQAVAEVFVFIY 85 >gi|317129223|ref|YP_004095505.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] gi|315474171|gb|ADU30774.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] Length = 100 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++E++APV+ AKG+ +A ++ K A E+NIPI E+ SL + Q+ +N IP Sbjct: 16 AVALGYNRSEDEAPVVKAKGKGYVADEIIKRARENNIPIQEDSSLVE-ILSQLEMNERIP 74 Query: 336 PVFYKAVAQLIYKIY 350 Y VA++ +Y Sbjct: 75 TALYGVVAEVFSFVY 89 >gi|258515578|ref|YP_003191800.1| hypothetical protein Dtox_2366 [Desulfotomaculum acetoxidans DSM 771] gi|257779283|gb|ACV63177.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM 771] Length = 104 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A ALR+ ++ APV+VA G+ IA+ ++K+A E +IPI ++P LA++L + Sbjct: 18 NTVETASALRFDPNKDQAPVVVATGKGDIARSIKKMAGELHIPIVKDPVLAQTL-HTLGT 76 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 N IP Y+AVA+++ +Y Sbjct: 77 NIEIPEHLYEAVAKVLAYVY 96 >gi|260899851|ref|ZP_05908246.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037] gi|308107387|gb|EFO44927.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037] Length = 346 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 3/181 (1%) Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L+ I+ P+ I Y+ ++ V + L++ + +D + ++ K +M+ E+K+E+ Sbjct: 163 LNEINNYPYFI-YYLLNSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNEL 221 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G+P IK ++ R + + + + T + NPTH + + Y PV++ Sbjct: 222 KETEGSPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLK 280 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYHK 352 +A RK E IPI E LARSL++ + +P FY+ VA +I + + Sbjct: 281 ISTESLALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQ 340 Query: 353 K 353 K Sbjct: 341 K 341 >gi|255322604|ref|ZP_05363749.1| FlhB domain protein [Campylobacter showae RM3277] gi|255300512|gb|EET79784.1| FlhB domain protein [Campylobacter showae RM3277] Length = 89 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 4/84 (4%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y + +++AP ++A G +AK + +A H+IPI E+ L L K V +N Sbjct: 7 TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLIEVLSK-VDLNE 65 Query: 333 AIPPVFYKAVAQL---IYKIYHKK 353 +PP YKAVA++ +Y++ +KK Sbjct: 66 EVPPNLYKAVAEIFNFLYQMTNKK 89 >gi|149183637|ref|ZP_01862054.1| flagellar biosynthesis [Bacillus sp. SG-1] gi|148848654|gb|EDL62887.1| flagellar biosynthesis [Bacillus sp. SG-1] Length = 94 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A+AL+Y + AP +VAKG+ LIA+ + + A EH +P+ E+ +L L + I Sbjct: 7 NKRKQAIALQYESEKQQAPKVVAKGKGLIAENILEKAREHGVPVQEDRNLVE-LLGNLDI 65 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 N +IP Y+AVA++ +Y Sbjct: 66 NESIPEELYQAVAEVFAFLY 85 >gi|197118783|ref|YP_002139210.1| FlhB cytoplasmic domain-containing protein [Geobacter bemidjiensis Bem] gi|197088143|gb|ACH39414.1| uncharacterized FlhB cytoplasmic domain protein-like protein [Geobacter bemidjiensis Bem] Length = 100 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y E+ AP +VAKG + A+ + +A EH + + + P L SL QV ++S IP Sbjct: 11 AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+L+ +Y Sbjct: 69 PELYQAVAELLAWLY 83 >gi|195953347|ref|YP_002121637.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932959|gb|ACG57659.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 87 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +++AP LVAKG+ IA+K+ + A EH +P+ ++ L + + + I IP Sbjct: 8 AIALKYERGKDNAPRLVAKGKGYIAQKIIEFAKEHQVPVIQDEKLLSAAY-NLDIYEEIP 66 Query: 336 PVFYKAVAQLI 346 P YKAVA+++ Sbjct: 67 PELYKAVAKVL 77 >gi|297531383|ref|YP_003672658.1| type III secretion exporter [Geobacillus sp. C56-T3] gi|297254635|gb|ADI28081.1| type III secretion exporter [Geobacillus sp. C56-T3] Length = 98 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +T PT A +RY ++ +P +VA+G +A+K+ ++A +H+IPI E+P L ++L Q+ Sbjct: 14 MTGPT--AAVIRYDESSGQSPTVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70 Query: 329 PINSAIPPVFYKAVAQLI 346 + IPP Y +A+++ Sbjct: 71 DLGDRIPPQLYAVIAEIL 88 >gi|82702472|ref|YP_412038.1| flagellar biosynthetic protein-like protein [Nitrosospira multiformis ATCC 25196] gi|82410537|gb|ABB74646.1| flagellar biosynthetic protein-like protein [Nitrosospira multiformis ATCC 25196] Length = 101 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 2/80 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N + A+AL Y +T + AP +VAKG+ L+A+ + + A H + + E P L SL QV + Sbjct: 5 NRSEAAVALAY-RTGDHAPQVVAKGRGLVAENIIREARRHGVFVHESPELV-SLLIQVDL 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 + IPP Y+AVA+L+ +Y Sbjct: 63 DQHIPPQLYRAVAELLVWLY 82 >gi|229541105|ref|ZP_04430165.1| conserved hypothetical protein [Bacillus coagulans 36D1] gi|229325525|gb|EEN91200.1| conserved hypothetical protein [Bacillus coagulans 36D1] Length = 96 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + APV+ AKG+ +A+++ + A + N+PI ++P LA +L ++ IN AIP Sbjct: 11 AVALQYSPDAHSAPVVKAKGKGDVARRIIEEAKKANVPIQQDPDLA-ALLGRLDINEAIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y AVA++ IY Sbjct: 70 EELYAAVAEVFAMIY 84 >gi|261408003|ref|YP_003244244.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] gi|261284466|gb|ACX66437.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] Length = 104 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++APV+VAKGQ +A+ + A EH +P+ E+ +L L K + ++ IP Sbjct: 17 AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVEILSK-LDLDQQIP 75 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA+++ +Y Sbjct: 76 EELYQLVAEVLTYVY 90 >gi|253700436|ref|YP_003021625.1| cytoplasmic domain of flagellar protein FhlB-like protein [Geobacter sp. M21] gi|251775286|gb|ACT17867.1| cytoplasmic domain of flagellar protein FhlB-like protein [Geobacter sp. M21] Length = 92 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y E+ AP +VAKG + A+ + +A EH + + + P L SL QV ++S IP Sbjct: 11 AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+L+ +Y Sbjct: 69 PELYQAVAELLAWLY 83 >gi|310658875|ref|YP_003936596.1| hypothetical protein CLOST_1571 [Clostridium sticklandii DSM 519] gi|308825653|emb|CBH21691.1| conserved protein of unknown function [Clostridium sticklandii] Length = 92 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E AP +V KGQ +AK++ + A E++IP++++ LA L + I+S IP Sbjct: 11 AVALRYDMNEFIAPKIVGKGQGEVAKRIIEKAKENDIPVYQDEKLAGQL-SAMEIDSFIP 69 Query: 336 PVFYKAVAQLI 346 Y+AVAQ++ Sbjct: 70 EELYEAVAQIL 80 >gi|119503687|ref|ZP_01625770.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma proteobacterium HTCC2080] gi|119460749|gb|EAW41841.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma proteobacterium HTCC2080] Length = 97 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 5/76 (6%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NP+ ++ALRY ++ AP++VA G IA ++ A E +P+ E+P LA+ L QVP+ Sbjct: 13 NPS--SVALRYDGSQ--APIVVATGSGEIADAIKAKAEESGVPVVEDPRLAQ-LLSQVPL 67 Query: 331 NSAIPPVFYKAVAQLI 346 IP Y+AVA+++ Sbjct: 68 GEEIPAELYRAVAEVL 83 >gi|329929329|ref|ZP_08283082.1| putative FlhB domain protein [Paenibacillus sp. HGF5] gi|328936698|gb|EGG33141.1| putative FlhB domain protein [Paenibacillus sp. HGF5] Length = 104 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++APV+VAKGQ +A+ + A EH +P+ E+ +L L K + ++ IP Sbjct: 17 AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVEILSK-LDLDQQIP 75 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA+++ +Y Sbjct: 76 EELYQLVAEVLTYVY 90 >gi|306821511|ref|ZP_07455113.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550469|gb|EFM38458.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 87 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ AP ++AKG N +AK M + A E +IPI+ + + L + + IN IP Sbjct: 9 AIALKYDSEEDIAPKVIAKGDNYVAKNMVEKAEELDIPIYRDEKIVHQL-RNLEINDNIP 67 Query: 336 PVFYKAVAQLI 346 Y+A+AQ++ Sbjct: 68 QELYEAIAQVL 78 >gi|163782344|ref|ZP_02177342.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1] gi|159882377|gb|EDP75883.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1] Length = 90 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 49/71 (69%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+RY + ++ AP++VAKG +A+++ ++A + +P+ E+ L +L K + + IP Sbjct: 8 AVAIRYTEGKDRAPIVVAKGAGELAERIIELAKKEGVPVLEDRHLIEALLK-IEVFEEIP 66 Query: 336 PVFYKAVAQLI 346 PV Y+AVA+++ Sbjct: 67 PVLYEAVAKVL 77 >gi|83647067|ref|YP_435502.1| flagellar protein FhlB cytoplasmic domain-containing protein [Hahella chejuensis KCTC 2396] gi|83635110|gb|ABC31077.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Hahella chejuensis KCTC 2396] Length = 116 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A+AL Y AP + AKG+ +A+++ IA EH +P++E P L RSL Q+ + Sbjct: 19 NDIQQAIALFY--DGKQAPKVSAKGEADLAEEIIAIAREHGVPLYENPELVRSL-AQLDL 75 Query: 331 NSAIPPVFYKAVAQLIYKIYH 351 IP + Y+ +A++I YH Sbjct: 76 GDEIPELLYRVIAEIIAFAYH 96 >gi|213423874|ref|ZP_03356854.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 228 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 56/105 (53%) Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 +KM K+E+K E+K+ GNP +K++++ + + ++ + +I+ NPTH + + + Sbjct: 81 MKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYF 140 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 P++ N A +R A + +P+ + LARSLFK Sbjct: 141 KPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFK 185 >gi|308273541|emb|CBX30143.1| hypothetical protein N47_D29520 [uncultured Desulfobacterium sp.] Length = 92 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 + + N + A+ALRY+ AP ++A G+ +A+K+ ++A EHNI I +P L + Sbjct: 1 MTLKNELNKAVALRYVPEREQAPRVIATGKGKLAEKIIQVAKEHNIHIHSDPDLV-EMLS 59 Query: 327 QVPINSAIPPVFYKAVAQLIYKIY 350 Q+ + IP YK VA+++ +Y Sbjct: 60 QLKPDQEIPSDLYKVVAEILVFVY 83 >gi|206889780|ref|YP_002247874.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741718|gb|ACI20775.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 88 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ AP +VAKG+ IA+K+ ++A +H +P+ E+ +L L K + I IP Sbjct: 7 AVALKYEAEKDAAPKVVAKGRGFIAQKIIELARQHGVPMKEDEALVEVLSK-LDIYEEIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 YKAVA+++ +Y K Sbjct: 66 VELYKAVAEILVFVYQVK 83 >gi|78776339|ref|YP_392654.1| FlhB domain-containing protein [Sulfurimonas denitrificans DSM 1251] gi|78496879|gb|ABB43419.1| FlhB domain protein [Sulfurimonas denitrificans DSM 1251] Length = 83 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 4/81 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + AP +VAKGQ A+ + KIA HN+PI ++ L L +V ++ +P Sbjct: 4 AAALRYDVEKEGAPRVVAKGQGRSAENIIKIAQLHNLPIRKDEDLI-ELLSKVELDKEVP 62 Query: 336 PVFYKAVAQL---IYKIYHKK 353 YKAVA++ IYKI K+ Sbjct: 63 SALYKAVAEVFSFIYKISKKE 83 >gi|32266819|ref|NP_860851.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC 51449] gi|32262871|gb|AAP77917.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC 51449] Length = 92 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG+N +A K+ A E ++P+F P L SL ++P++S IP Sbjct: 6 AVALAYNAQNDSAPRVVAKGKNELALKIIAKAQEFDVPLFSNPLLVDSLL-EIPLDSHIP 64 Query: 336 PVFYKAVAQL 345 P Y AV ++ Sbjct: 65 PEMYNAVVEV 74 >gi|315648157|ref|ZP_07901258.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] gi|315276803|gb|EFU40146.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] Length = 103 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++AP++VAKGQ +A+ + A EH +P+ E+ +L L K + ++ IP Sbjct: 17 AVALKYTPGESEAPMVVAKGQGKLAESILDKAKEHGVPVQEDAALVEILSK-LDLDQQIP 75 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA+++ +Y Sbjct: 76 AELYQLVAEVLTYVY 90 >gi|149194925|ref|ZP_01872018.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus TB-2] gi|149134846|gb|EDM23329.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus TB-2] Length = 92 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY E+ AP ++AKG+ IA+K+ + A E +IP+F+ L SL K N IP Sbjct: 9 AAALRYKAYEDLAPKVIAKGKGEIAEKIIQKAKEFDIPLFQNEELVDSLLKID--NDTIP 66 Query: 336 PVFYKAVAQL---IYKIYHK 352 P YKAV ++ +YK+ K Sbjct: 67 PELYKAVVEVFIWLYKMEEK 86 >gi|330893300|gb|EGH25961.1| type III secretion component protein HrcU [Pseudomonas syringae pv. mori str. 301020] Length = 140 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTE 285 IK E KQS G+P +K ++ ++ + + A A +++ NPTHYA+AL Y E Sbjct: 1 IKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGE 60 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 P++ KG++ A + A + IP+ + L R+L++ + IP +AV Sbjct: 61 TPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH- 118 Query: 346 IYKI 349 IYK+ Sbjct: 119 IYKV 122 >gi|213029691|ref|ZP_03344138.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 107 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E Sbjct: 4 LAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVEN 63 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLI 346 LARSLF +V IP ++ VA L+ Sbjct: 64 VELARSLFFEVERGDKIPETLFEPVAALL 92 >gi|302387748|ref|YP_003823570.1| type III secretion exporter [Clostridium saccharolyticum WM1] gi|302198376|gb|ADL05947.1| type III secretion exporter [Clostridium saccharolyticum WM1] Length = 115 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +N APV+VA G +A+K+ + A E+ +P++E+ SLA ++ Q+ + S +P Sbjct: 12 AVALKYDDAKNSAPVIVASGMGYMAEKIIETANENGVPVYEDNSLA-TILTQLELGSQVP 70 Query: 336 PVFYKAVAQL 345 Y+A+ ++ Sbjct: 71 EELYQAIVEI 80 >gi|54295419|ref|YP_127834.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens] gi|53755251|emb|CAH16745.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens] Length = 88 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N IP Sbjct: 8 AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVDLNEEIP 64 Query: 336 PVFYKAVAQLIYKIYH 351 Y AVAQ++ +Y+ Sbjct: 65 KALYIAVAQILAFLYY 80 >gi|91782705|ref|YP_557911.1| putative type III secretion transmembrane protein, EscU/SctU/YscU-like [Burkholderia xenovorans LB400] gi|91686659|gb|ABE29859.1| Putative type III secretion transmembrane protein, EscU/SctU/YscU-like protein [Burkholderia xenovorans LB400] Length = 246 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 31/258 (12%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL--HVLL 66 +K+EAP+ ++I A +G S ++ S L +YL F +P +Y++ S L HV Sbjct: 3 DKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYL-FIEAPHLYALGSQLILHVTT 61 Query: 67 ASATQRKLEDISHIVF--------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 A++ + ++ +LT L + +++P L+ Q VL Sbjct: 62 LDASRDFGDQLASTCAALYAFMAPVLTALGVGVLAVLVPELM------------QTRGVL 109 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 V P KR++ G+K+++S+ L + + + ++ TI+ T+ L ++ Sbjct: 110 AWKRVAPDVKRLNPINGLKQMFSLRLLWDSVLTIIQF----TILLFLFTQAVVAWLRQLA 165 Query: 179 -ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ---WYSKLKMSKQEIKDEIK 234 A S+ H +T ++ A+ V + Q W L+M K EIK E + Sbjct: 166 PAWEFSLPVHLGYTAIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFR 225 Query: 235 QSYGNPIIKNRQKSIARS 252 G+P +K+R++++ R Sbjct: 226 DDEGDPYVKSRRRALHRE 243 >gi|310641524|ref|YP_003946282.1| flagellar protein fhlb-like protein [Paenibacillus polymyxa SC2] gi|309246474|gb|ADO56041.1| Flagellar protein FhlB-like protein [Paenibacillus polymyxa SC2] Length = 99 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++AP++VAKG IA + + A EH +P+ E+ +L L K + ++ IP Sbjct: 15 AVALKYTPGESEAPIVVAKGSGRIADSILEKAKEHGVPVQEDAALVEVLSK-LDLDEQIP 73 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ IY Sbjct: 74 AELYQLVAEVLTYIYQ 89 >gi|205373357|ref|ZP_03226161.1| flagellar biosynthesis protein [Bacillus coahuilensis m4-4] Length = 94 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY DAP L+AKG+ L+A+++ + A E+ I + E+P+L + Q+ +N IP Sbjct: 9 AIALRYDDMSMDAPKLIAKGKGLVAEQIIEKAKENGIQVQEDPNLVE-MLSQLNMNETIP 67 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA++ +Y Sbjct: 68 AELYEVVAEVFAYVY 82 >gi|313682765|ref|YP_004060503.1| type iii secretion exporter [Sulfuricurvum kujiense DSM 16994] gi|313155625|gb|ADR34303.1| type III secretion exporter [Sulfuricurvum kujiense DSM 16994] Length = 83 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY +T+ DAP +VAKG+ A+ + KIA HN+PI ++ L L +V ++ IP Sbjct: 4 AVALRYDRTKEDAPRVVAKGKGASAENIIKIAELHNLPIHKDEDLVE-LLSKVELDKEIP 62 Query: 336 PVFYKAVAQL---IYKIYHKK 353 Y AV ++ IYKI + + Sbjct: 63 EKLYVAVVEVFGFIYKITNPR 83 >gi|94263289|ref|ZP_01287105.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] gi|94272298|ref|ZP_01292101.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] gi|93450174|gb|EAT01485.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] gi|93456372|gb|EAT06496.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] Length = 96 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP LVAKG +A+K+ ++A EH +PI E+ L + ++ + IP Sbjct: 16 AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74 Query: 336 PVFYKAVAQLIYKIY 350 P Y VA+++ IY Sbjct: 75 PETYLLVAEILAFIY 89 >gi|94267692|ref|ZP_01290961.1| FlhB domain protein [delta proteobacterium MLMS-1] gi|93451894|gb|EAT02625.1| FlhB domain protein [delta proteobacterium MLMS-1] Length = 96 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP LVAKG +A+K+ ++A EH +PI E+ L + ++ + IP Sbjct: 16 AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74 Query: 336 PVFYKAVAQLIYKIY 350 P Y VA+++ IY Sbjct: 75 PETYLLVAEILAFIY 89 >gi|220932827|ref|YP_002509735.1| FlhB domain protein [Halothermothrix orenii H 168] gi|219994137|gb|ACL70740.1| FlhB domain protein [Halothermothrix orenii H 168] Length = 95 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++++AP +VA G+ IA+K+ + A +H+IPI ++ + +L + + I + IP Sbjct: 16 AVALRYNTSKDNAPRIVASGKGTIAEKIMETARKHDIPIEKDQDIVDALIR-LNIGTEIP 74 Query: 336 PVFYKAVAQLIYKIY 350 YK +A+++ IY Sbjct: 75 QELYKVIAEILSFIY 89 >gi|213024578|ref|ZP_03339025.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 183 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%) Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 +LD Y +KM K+E+K E+K+ GNP +K++++ + + ++ + + Sbjct: 22 LLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRL 81 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 I+ NPTH + + + P++ N A +R A + +P+ + LARSLFK Sbjct: 82 IVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFK 140 >gi|308068636|ref|YP_003870241.1| FhlB domain-containing protein [Paenibacillus polymyxa E681] gi|305857915|gb|ADM69703.1| FhlB domain-containing protein [Paenibacillus polymyxa E681] Length = 99 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++AP++VAKG +A + + A EH +P+ E+ +L L K + ++ IP Sbjct: 15 AVALKYTPGESEAPIVVAKGSGRVADSILEKAKEHGVPVQEDAALVEVLSK-LDLDEQIP 73 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ IY Sbjct: 74 AELYQLVAEVLTYIYQ 89 >gi|125973277|ref|YP_001037187.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405] gi|256003757|ref|ZP_05428745.1| FlhB domain protein [Clostridium thermocellum DSM 2360] gi|281417480|ref|ZP_06248500.1| type III secretion exporter [Clostridium thermocellum JW20] gi|125713502|gb|ABN51994.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405] gi|255992318|gb|EEU02412.1| FlhB domain protein [Clostridium thermocellum DSM 2360] gi|281408882|gb|EFB39140.1| type III secretion exporter [Clostridium thermocellum JW20] gi|316940491|gb|ADU74525.1| type III secretion exporter [Clostridium thermocellum DSM 1313] Length = 94 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL+Y EN+AP ++ G+ IA+K+ + A E+NIPI+E LA +L + I IPP Sbjct: 12 ALKYSPEENNAPQIIGLGKGEIAEKILEKAKENNIPIYENEELAAAL-NAMNIGDEIPPE 70 Query: 338 FYKAVAQLI 346 Y VAQ++ Sbjct: 71 LYDIVAQIL 79 >gi|16126150|ref|NP_420714.1| flhB-like protein [Caulobacter crescentus CB15] gi|221234921|ref|YP_002517357.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000] gi|13423358|gb|AAK23882.1| flhB-related protein [Caulobacter crescentus CB15] gi|220964093|gb|ACL95449.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000] Length = 87 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E +AP +VA GQ I +K+ + A EH +PI E+P LA++L + I+ IP Sbjct: 14 AVALLY--EEPNAPKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQAL-STIEIDEEIP 70 Query: 336 PVFYKAVAQLI 346 Y+AVA+++ Sbjct: 71 EALYRAVAEVL 81 >gi|237753416|ref|ZP_04583896.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC BAA-430] gi|229375683|gb|EEO25774.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC BAA-430] Length = 94 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + AP ++AKG+ +A+K+ + A E +IP+F+ +L SL + ++ IP Sbjct: 11 AVALAYEQNKQRAPKVIAKGEGFLAEKIIEKAKEFDIPLFQSKALVDSLI-HLELDEEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAV ++ +Y Sbjct: 70 PTLYKAVVEVFIWLYQ 85 >gi|52842789|ref|YP_096588.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629900|gb|AAU28641.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 112 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N IP Sbjct: 32 AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEIP 88 Query: 336 PVFYKAVAQLIYKIYH 351 Y AVAQ++ +Y+ Sbjct: 89 KALYIAVAQILAFLYY 104 >gi|294339812|emb|CAZ88175.1| putative Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Thiomonas sp. 3As] Length = 108 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY AP +VAKGQ L+A+ + A E + + E P L + L V +++ IP Sbjct: 18 AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76 Query: 336 PVFYKAVAQLI 346 P Y AVA+L+ Sbjct: 77 PALYTAVAELL 87 >gi|296135643|ref|YP_003642885.1| type III secretion exporter [Thiomonas intermedia K12] gi|295795765|gb|ADG30555.1| type III secretion exporter [Thiomonas intermedia K12] Length = 108 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY AP +VAKGQ L+A+ + A E + + E P L + L V +++ IP Sbjct: 18 AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76 Query: 336 PVFYKAVAQLI 346 P Y AVA+L+ Sbjct: 77 PALYTAVAELL 87 >gi|34558360|ref|NP_908175.1| hypothetical protein WS2076 [Wolinella succinogenes DSM 1740] gi|34484079|emb|CAE11075.1| hypothetical protein WS2076 [Wolinella succinogenes] Length = 102 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A AL Y + AP L+AKG+ +IA+++ + A E IP+F+ L SL + P++ Sbjct: 16 PLPKAAALAYDSQKQRAPKLLAKGKGIIAERIIERARELEIPLFQNELLVNSLLES-PLD 74 Query: 332 SAIPPVFYKAVAQL 345 IPP YKAV ++ Sbjct: 75 QEIPPALYKAVVEV 88 >gi|54298571|ref|YP_124940.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris] gi|148358686|ref|YP_001249893.1| flagellar protein FlhB [Legionella pneumophila str. Corby] gi|296108224|ref|YP_003619925.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] gi|53752356|emb|CAH13788.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris] gi|148280459|gb|ABQ54547.1| flagellar protein FlhB [Legionella pneumophila str. Corby] gi|295650126|gb|ADG25973.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] Length = 88 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N IP Sbjct: 8 AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEIP 64 Query: 336 PVFYKAVAQLIYKIYH 351 Y AVAQ++ +Y+ Sbjct: 65 KALYIAVAQILAFLYY 80 >gi|253996297|ref|YP_003048361.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8] gi|253982976|gb|ACT47834.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8] Length = 119 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NP A+AL Y T + AP +VAKG+ LIA+++ A +H++ + E L +L QV + Sbjct: 25 NPNQQAIALTYA-TGDYAPRVVAKGRGLIAEQIIARAKQHDVFVHESKDLV-ALLMQVDL 82 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 + IPP Y+A+A+++ +Y Sbjct: 83 DDHIPPTLYQAIAEILSWLY 102 >gi|70729068|ref|YP_258804.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68343367|gb|AAY90973.1| FlhB domain protein [Pseudomonas fluorescens Pf-5] Length = 109 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL+Y AP L AKG + +A+ + KIA ++ +PI+E L + L ++ + Sbjct: 6 PPRQAIALKY--DGQQAPTLTAKGDDELAEAILKIARDYEVPIYENAELVK-LLARLELG 62 Query: 332 SAIPPVFYKAVAQLI 346 +IPP Y+ +A++I Sbjct: 63 ESIPPELYRTIAEII 77 >gi|254460203|ref|ZP_05073619.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium HTCC2083] gi|206676792|gb|EDZ41279.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium HTCC2083] Length = 217 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 33/233 (14%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +K+ P+ KK++D +G S E ++ S + L + S + Sbjct: 1 MAEEDDVADKSHDPTQKKLDDVRKKGEVAKSNEVNVALSYFGIWVLLAVLGGVSVSSFGT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--------- 111 L L +A R+ H S PGL ++ G G ++ Sbjct: 61 TLQSGLLNAFSREPS---------LHFS--------PGLFAPLLLGAGQFVGLMAIMPAA 103 Query: 112 -------IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 +R + + +KP R+S+ + K + L F KSFVK+++ + + Sbjct: 104 LIVLALLARRTFLFTSSKLKPKASRISILKNAKNKFGRGGLFEFAKSFVKLLVFSLCLGL 163 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 L N+ T++ +A+ + F + L + +L A + ++D GW + Sbjct: 164 FLNANFDTIVVTSAASERGAISVLFDLMTSFLSLAVLIAAVIAIIDYGWQVSE 216 >gi|307611462|emb|CBX01131.1| hypothetical protein LPW_28301 [Legionella pneumophila 130b] Length = 88 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N IP Sbjct: 8 AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVHLNEEIP 64 Query: 336 PVFYKAVAQLIYKIYH 351 Y AVAQ++ +Y+ Sbjct: 65 KALYIAVAQILAFLYY 80 >gi|322419281|ref|YP_004198504.1| type III secretion exporter [Geobacter sp. M18] gi|320125668|gb|ADW13228.1| type III secretion exporter [Geobacter sp. M18] Length = 94 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y E AP ++AKG + A+ + +A EH + + + P L ++ QV +++ IP Sbjct: 11 AVAMAYSPEEGSAPRVIAKGSGISAEAIISLAREHGVYVHQSPELV-AMLMQVDLDAEIP 69 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+L+ +Y Sbjct: 70 PELYQAVAELLAWLY 84 >gi|254491433|ref|ZP_05104612.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxidans DMS010] gi|224462911|gb|EEF79181.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxydans DMS010] Length = 96 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++AP + A G+ IA+++ +IA EHNIP+ E+ LA L + + IP Sbjct: 10 AIALQY--DGDNAPTVTASGEGAIAEEILRIAREHNIPLKEDALLAE-LLSDLNLGEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 P+ Y+ +A++I Y Sbjct: 67 PMLYRVIAEVIAYAY 81 >gi|261420589|ref|YP_003254271.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61] gi|319768259|ref|YP_004133760.1| type III secretion exporter [Geobacillus sp. Y412MC52] gi|261377046|gb|ACX79789.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61] gi|317113125|gb|ADU95617.1| type III secretion exporter [Geobacillus sp. Y412MC52] Length = 98 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +T PT A +RY ++ +P++VA+G +A+K+ ++A +H+IPI E+P L ++L Q+ Sbjct: 14 MTGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDRIPPQLYAVIA 85 >gi|212639580|ref|YP_002316100.1| hypothetical protein Aflv_1754 [Anoxybacillus flavithermus WK1] gi|212561060|gb|ACJ34115.1| Uncharacterized protein containing cytoplasmic domain of flagellar protein FhlB [Anoxybacillus flavithermus WK1] Length = 87 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ APV+VAKG+ +A ++ + A ++++PI+E+ +LA ++ Q+ +N IP Sbjct: 6 AVALSY-DEQHIAPVVVAKGEGAVADRIIERAKQYDVPIYEDETLA-TMLGQLQLNETIP 63 Query: 336 PVFYKAVAQLIYKIYH 351 YK VA++ IY Sbjct: 64 EELYKVVAEVFAFIYQ 79 >gi|307826053|ref|ZP_07656266.1| type III secretion exporter [Methylobacter tundripaludum SV96] gi|307732892|gb|EFO03756.1| type III secretion exporter [Methylobacter tundripaludum SV96] Length = 94 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +AP + AKG L A+++ +IA H IP+ EP LAR + Q+P+ IP Sbjct: 11 AIALKY--DGKNAPKVTAKGSGLTAEQILQIAELHGIPLQTEPELAR-ILAQIPLGDEIP 67 Query: 336 PVFYKAVAQLI 346 Y AVA++I Sbjct: 68 NELYVAVAEII 78 >gi|90424888|ref|YP_533258.1| type III secretion protein [Rhodopseudomonas palustris BisB18] gi|90106902|gb|ABD88939.1| type III secretion protein [Rhodopseudomonas palustris BisB18] Length = 88 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y +T AP ++AKG+ I K+ ++A H+IPI E LA +L K V I Sbjct: 6 PNQIAVALHYDRT--GAPTVIAKGKGAIGAKIVEVARAHDIPIEENEILAGALSK-VEIG 62 Query: 332 SAIPPVFYKAVAQLI 346 IP YKAVA+++ Sbjct: 63 DEIPQELYKAVAEVL 77 >gi|187478213|ref|YP_786237.1| flagellar biosynthesis protein [Bordetella avium 197N] gi|115422799|emb|CAJ49327.1| putative flagellar biosynthesis protein [Bordetella avium 197N] Length = 97 Score = 52.8 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y + + AP +VAKG +A+ + + A EH++ + E P L L QV ++S IP Sbjct: 12 AVAISYDEADG-APRVVAKGYGQMAETIVRTAREHDLYVHESPELV-GLLMQVDLDSHIP 69 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 70 PALYTAVAELLAWLY 84 >gi|157737630|ref|YP_001490313.1| FlhB domain-containing protein [Arcobacter butzleri RM4018] gi|157699484|gb|ABV67644.1| FlhB domain protein [Arcobacter butzleri RM4018] Length = 94 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL+Y +++AP + AKG+ + A + KIA E+ IPI ++ L L Q+ I+ Sbjct: 11 QKAVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDIDKE 69 Query: 334 IPPVFYKAVAQLIYKIYH 351 IP Y+AVA++ IY Sbjct: 70 IPTSMYRAVAEIFSFIYD 87 >gi|149182544|ref|ZP_01861016.1| flagellar biosynthesis [Bacillus sp. SG-1] gi|148849736|gb|EDL63914.1| flagellar biosynthesis [Bacillus sp. SG-1] Length = 98 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY ++E AP ++A+G +A K+ ++A EHNI + E+ SL +SL + Sbjct: 14 MNGPT--AAVIRYEESEGKAPKVIAQGTGHLATKIMELAKEHNITMQEDSSLVQSLL-DI 70 Query: 329 PINSAIPPVFYKAVAQLI 346 + +PP Y +A+++ Sbjct: 71 DLGENVPPQLYSVIAEIL 88 >gi|114777940|ref|ZP_01452854.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1] gi|114551727|gb|EAU54279.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1] Length = 95 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 H A+AL + + AP + AKG +A ++ ++A E+NIPI E+ L + +F Q+ I ++ Sbjct: 6 HQAIALNWDPYLDAAPKITAKGSGQLADEIIRLARENNIPIREDRDLVQ-IFSQLDIGAS 64 Query: 334 IPPVFYKAVAQLIYKIY 350 +PP + A+A+++ IY Sbjct: 65 VPPEVHTAIAEILAFIY 81 >gi|254501917|ref|ZP_05114068.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11] gi|222437988|gb|EEE44667.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11] Length = 97 Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+AL Y + APV+ AKG AK++ +IA E +PI + P +A +L Q+ Sbjct: 5 TKPEKIAVALEY--EDGGAPVVSAKGTGSAAKRIEEIAREAGVPIEQNPMMAEAL-SQIE 61 Query: 330 INSAIPPVFYKAVAQLI 346 ++ IP Y+AVA L+ Sbjct: 62 VDHEIPMELYQAVAVLV 78 >gi|224370762|ref|YP_002604926.1| FlhB1 [Desulfobacterium autotrophicum HRM2] gi|223693479|gb|ACN16762.1| FlhB1 [Desulfobacterium autotrophicum HRM2] Length = 88 Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +P + AKG ++A+K+ IA +H++P+ ++P L L + IN IP Sbjct: 6 AVALKYDRAAGSSPKVTAKGSGIVAQKIIDIAEQHDVPVKKDPDLVEVL-AGLDINQEIP 64 Query: 336 PVFYKAVAQLIYKIY 350 Y AVA+L+ +Y Sbjct: 65 QEIYVAVAELLAFVY 79 >gi|297538192|ref|YP_003673961.1| type III secretion exporter [Methylotenera sp. 301] gi|297257539|gb|ADI29384.1| type III secretion exporter [Methylotenera sp. 301] Length = 119 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + NP A+AL Y E AP +VAKG+ IA+++ A EH++ + E L +L QV Sbjct: 26 VVNPNQQAIALAYAAGEY-APKVVAKGRGAIAEQIIARAKEHDVFVHESKDLV-ALLMQV 83 Query: 329 PINSAIPPVFYKAVAQLIYKIY 350 ++ IPP Y+A+A+++ +Y Sbjct: 84 DLDDHIPPALYQAIAEILAWLY 105 >gi|315637405|ref|ZP_07892618.1| FlhB domain protein [Arcobacter butzleri JV22] gi|315478297|gb|EFU69017.1| FlhB domain protein [Arcobacter butzleri JV22] Length = 94 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A+AL+Y +++AP + AKG+ + A + KIA E+ IPI ++ L L Q+ + Sbjct: 8 NFVQKAVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDV 66 Query: 331 NSAIPPVFYKAVAQLIYKIYH 351 + IP Y+AVA++ IY Sbjct: 67 DKEIPTSMYRAVAEIFSFIYD 87 >gi|254459185|ref|ZP_05072607.1| FlhB domain protein [Campylobacterales bacterium GD 1] gi|207084078|gb|EDZ61368.1| FlhB domain protein [Campylobacterales bacterium GD 1] Length = 83 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + AP +VAKGQ A+ + KIA HN+PI ++ L L +V ++ +P Sbjct: 4 AAALRYNIDKESAPRVVAKGQGKSAENIIKIAELHNLPIKKDEDLM-ELLSKVELDKEVP 62 Query: 336 PVFYKAVAQL---IYKIYHK 352 YKAVA++ IYK +K Sbjct: 63 AALYKAVAEVFSFIYKTTNK 82 >gi|313905165|ref|ZP_07838534.1| type III secretion exporter [Eubacterium cellulosolvens 6] gi|313470068|gb|EFR65401.1| type III secretion exporter [Eubacterium cellulosolvens 6] Length = 103 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY +N APV+VA G +A+K+ + A + +P++E+ SLA SL Q+ + IP Sbjct: 12 AAALRYDPEKNGAPVIVASGMGYMAEKITETAMKAGVPVYEDDSLA-SLLTQLKLGKEIP 70 Query: 336 PVFYKAVAQL 345 ++A+ ++ Sbjct: 71 EELFQAIVEI 80 >gi|167628834|ref|YP_001679333.1| flagellar biosynthesis protein, putative [Heliobacterium modesticaldum Ice1] gi|167591574|gb|ABZ83322.1| flagellar biosynthesis protein, putative [Heliobacterium modesticaldum Ice1] Length = 100 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 ALRY +DAPV++A+G+ +A+K+ ++A E NIPI E+P L +L + + IPP Sbjct: 21 ALRY-DPNSDAPVVIAQGKGHLARKIIEMAKEKNIPIQEDPLLVENLI-DMDLGDTIPPQ 78 Query: 338 FYKAVAQLIYKI 349 Y VA+++ I Sbjct: 79 LYLVVAEILLMI 90 >gi|28901209|ref|NP_800864.1| putative type III secretion system EscU protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809722|dbj|BAC62697.1| putative type III secretion system EscU protein [Vibrio parahaemolyticus RIMD 2210633] Length = 352 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/358 (20%), Positives = 157/358 (43%), Gaps = 33/358 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54 M ++ + K P+ KK+ D +G P + E +F+ I+ +Y LF +S Sbjct: 1 MMAEESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLELIVFTIIIIFTLYYLFEYSGE 60 Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 +S VL A T I + + + L+L L ++ + +++ Sbjct: 61 WFSA-----VLYADITVGLFTGIDVLWWCVGGLAL-----------LKLVMAVFEWVMIN 104 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SLTEN 169 V++ + +++ G K I+ + + +SF K++ + ++ + + + Sbjct: 105 KAVISTESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGS 161 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 +L+ I+ P+ I Y+ +++ + L++ + +D + + K +M+ E+ Sbjct: 162 QLYLLNEINNYPYFI-YYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 220 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E+K++ G+P IK+ +K R + + + T + NPTH + + Y P Sbjct: 221 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 279 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346 V++ +A + RK IPI E LAR+++ ++ +P F+ VA +I Sbjct: 280 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALII 337 >gi|304404230|ref|ZP_07385892.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9] gi|304347208|gb|EFM13040.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9] Length = 104 Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 TN A+AL+Y E APV++AKG+ +A+ + A E+ +PI E+ SL L K + Sbjct: 14 TNQARKAVALKYEPGERSAPVVIAKGKGHLAEAIVAKAAENGVPIQEDSSLVEVLSK-LD 72 Query: 330 INSAIPPVFYKAVAQLIYKIY 350 I+ IP Y VA+++ +Y Sbjct: 73 IDQEIPQELYALVAEILSFVY 93 >gi|297584023|ref|YP_003699803.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10] gi|297142480|gb|ADH99237.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10] Length = 98 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y T + AP + AKG+ +A+++ A EH+IPI E+ SL L Q+ I+ IP Sbjct: 15 AVALGYEVTRDSAPTIKAKGKGYVAEEIISRAKEHDIPIQEDKSLV-ELLSQLEIHEKIP 73 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA++ IY Sbjct: 74 EDLYEVVAEVFAFIYR 89 >gi|153836050|ref|ZP_01988717.1| VcsU2 [Vibrio parahaemolyticus AQ3810] gi|149750804|gb|EDM61549.1| VcsU2 [Vibrio parahaemolyticus AQ3810] Length = 351 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/355 (20%), Positives = 156/355 (43%), Gaps = 33/355 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57 ++ + K P+ KK+ D +G P + E +F+ I+ +Y LF +S +S Sbjct: 3 EESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLELIVFTIIIIFTLYYLFEYSGEWFS 62 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 VL A T I + + + L+L L ++ I +++ V Sbjct: 63 A-----VLYADITVGLFTGIDVLWWCVGGLAL-----------LKLVMAIFEWVMINKAV 106 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SLTENYFT 172 ++ + +++ G K I+ + + +SF K++ + ++ + + + Sbjct: 107 ISTESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY 163 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +L+ I+ P+ I Y+ +++ + L++ + +D + + K +M+ E+K+E Sbjct: 164 LLNEINNYPYFI-YYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNE 222 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K++ G+P IK+ +K R + + + T + NPTH + + Y PV++ Sbjct: 223 LKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRPVVL 281 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346 +A + RK IPI E LAR+++ ++ +P F+ VA +I Sbjct: 282 KICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALII 336 >gi|326204817|ref|ZP_08194671.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782] gi|325985029|gb|EGD45871.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782] Length = 98 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 +A AL+Y + AP +VA G+ IA+++ + A E+N+P++++ +LA++L + I I Sbjct: 12 HAAALQYSPDSDAAPRIVAAGKGQIAERIIQKAQENNVPLYQDTNLAQTL-SSLSIGDEI 70 Query: 335 PPVFYKAVAQLI 346 PP Y+ VA+++ Sbjct: 71 PPEIYEVVAEIL 82 >gi|85859194|ref|YP_461396.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] gi|85722285|gb|ABC77228.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] Length = 92 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A A+RY T + AP + AKG +A+K+ ++A ++NIP+ +P L + L + + I+ IP Sbjct: 7 AAAIRYDGTVDVAPKVTAKGCGFVAEKIIELAQKNNIPVRNDPGLVQILCR-LDIDEQIP 65 Query: 336 PVFYKAVAQLIYKIY 350 YKAVA+++ +Y Sbjct: 66 EDLYKAVAEILAYVY 80 >gi|302392093|ref|YP_003827913.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501] gi|302204170|gb|ADL12848.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501] Length = 96 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y +N+AP +VAKG N +AKK+ A E++IPI ++ +L ++L Q+ + I Sbjct: 14 AAALKYDPEQNNAPQVVAKGSNEVAKKIIAKAKENDIPIHQDDTLVKNLI-QLDLEEEIT 72 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ IY Sbjct: 73 GELYQIVAEVLSFIYQ 88 >gi|116696302|ref|YP_841878.1| flagellar biosynthesis protein [Ralstonia eutropha H16] gi|113530801|emb|CAJ97148.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 97 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + AP +VAKG ++A+ + A E + I + P+L +L QV ++S +P Sbjct: 11 AIALSY-QHRDRAPRVVAKGYGVVAEAIIARAREAGVYIHDSPTLV-NLLMQVDLDSHVP 68 Query: 336 PVFYKAVAQLIYKIYH 351 P Y AVA+L+ IYH Sbjct: 69 PQLYVAVAELLAWIYH 84 >gi|260362767|ref|ZP_05775636.1| protein VcsU2 [Vibrio parahaemolyticus K5030] gi|260880055|ref|ZP_05892410.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034] gi|260895172|ref|ZP_05903668.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466] gi|308085801|gb|EFO35496.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466] gi|308091813|gb|EFO41508.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034] gi|308112085|gb|EFO49625.1| protein VcsU2 [Vibrio parahaemolyticus K5030] Length = 351 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 3/175 (1%) Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 +L+ I+ P+ I Y+ +++ + L++ + +D + + K +M+ E+K+E Sbjct: 164 LLNEINNYPYFI-YYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNE 222 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K++ G+P IK+ +K R + + + T + NPTH + + Y PV++ Sbjct: 223 LKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRPVVL 281 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346 +A + RK IPI E LAR+++ ++ +P F+ VA +I Sbjct: 282 KICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALII 336 >gi|251797459|ref|YP_003012190.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] gi|247545085|gb|ACT02104.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] Length = 101 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + APV+ AKG+ +A ++ + A EH++P+ ++ SL L K + ++ +IP Sbjct: 17 AVALKYEPGAHKAPVVTAKGRGYLADQILEQAAEHHVPVQQDSSLVEVLSK-LDVDQSIP 75 Query: 336 PVFYKAVAQLIYKIY 350 P Y VA+++ +Y Sbjct: 76 PELYTLVAEILSFVY 90 >gi|295689582|ref|YP_003593275.1| type III secretion exporter [Caulobacter segnis ATCC 21756] gi|295431485|gb|ADG10657.1| type III secretion exporter [Caulobacter segnis ATCC 21756] Length = 87 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +A+ + + AP ++A GQ + +K+ + A EH +PI E+P LA++L + I+ IP Sbjct: 13 IAVALLHDDASAPRVLASGQGWVGEKIIETAREHGVPIEEDPVLAQAL-STIEIDEEIPD 71 Query: 337 VFYKAVAQLI 346 Y+AVA+++ Sbjct: 72 ALYRAVAEVL 81 >gi|77918709|ref|YP_356524.1| hypothetical protein Pcar_1105 [Pelobacter carbinolicus DSM 2380] gi|77544792|gb|ABA88354.1| putative cytoplasmic domain of flagellar protein [Pelobacter carbinolicus DSM 2380] Length = 90 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N + A+AL Y + APV+VA G+ +A+K+ A E + + +P L + +VP+ Sbjct: 5 NRQNKAVALTYQKASGKAPVVVASGKGAVAEKILATAGEAGVEVVRDPDLVE-ILDKVPL 63 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y+AVA+++ +Y Sbjct: 64 GQEIPEELYQAVAEILAFVY 83 >gi|313200541|ref|YP_004039199.1| flagellar biosynthetic protein [Methylovorus sp. MP688] gi|312439857|gb|ADQ83963.1| putative flagellar biosynthetic protein [Methylovorus sp. MP688] Length = 101 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y +T + AP +VAKG+ L+A+++ A EH++ + E L SL Q+ ++ Sbjct: 11 TQQAIALAY-ETGDFAPRVVAKGRGLVAEQIIARAREHDVFVHESKELV-SLLMQIDLDD 68 Query: 333 AIPPVFYKAVAQLIYKIY 350 IPP Y A+A+++ +Y Sbjct: 69 HIPPKLYMAIAEILAWLY 86 >gi|118474492|ref|YP_892339.1| FlhB domain-containing protein [Campylobacter fetus subsp. fetus 82-40] gi|118413718|gb|ABK82138.1| FlhB domain protein [Campylobacter fetus subsp. fetus 82-40] Length = 87 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + ++AP ++A G+ +A K+ + A +H IPI E+ L L K + IN IP Sbjct: 7 AVALGYNKKRDNAPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVEILSK-IDINQEIP 65 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ +Y Sbjct: 66 PNLYKAVAEVFSFLYR 81 >gi|188996729|ref|YP_001930980.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931796|gb|ACD66426.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 87 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + + AP +VAKG+ +IA+++ ++A +H + + E+P+L L + + IP Sbjct: 8 AVALRYERYRDSAPKVVAKGKGIIAERIIEVAKQHGVYLKEDPTLVEVL-SGLELYEEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 YK +A++ IY K Sbjct: 67 EELYKVIAEIFVLIYQAK 84 >gi|260887870|ref|ZP_05899133.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185] gi|330838735|ref|YP_004413315.1| type III secretion exporter [Selenomonas sputigena ATCC 35185] gi|260862376|gb|EEX76876.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185] gi|329746499|gb|AEB99855.1| type III secretion exporter [Selenomonas sputigena ATCC 35185] Length = 110 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + AP +VAKG+ +A+ + A ++ IP+++ SL L + ++ IP Sbjct: 24 AVALRYAPEKQHAPKVVAKGRGFVAENILAAAQKNAIPVYQNKSLVNMLMA-LELDREIP 82 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ +Y Sbjct: 83 PELYRAVAEVLAYVY 97 >gi|167646750|ref|YP_001684413.1| flhB-like protein [Caulobacter sp. K31] gi|167349180|gb|ABZ71915.1| flhB-related protein [Caulobacter sp. K31] Length = 90 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E +AP +VA G+ + K+ + A EH +PI E +LA++L + ++ IP Sbjct: 13 AVALRY--EEPNAPRVVATGRGWLGDKIIETAREHGVPIEENAALAQAL-STIELDEEIP 69 Query: 336 PVFYKAVAQLI 346 Y+AVA+++ Sbjct: 70 EALYRAVAEIL 80 >gi|258592464|emb|CBE68773.1| Cytoplasmic domain of flagellar protein FhlB-like protein protein [NC10 bacterium 'Dutch sediment'] Length = 104 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y EN AP +VA G+ IA+++ +A H I + ++P L L ++ I AIP Sbjct: 14 AVALKYEAGENGAPEVVASGRGRIAEQIIALAKAHGIYVKQDPELVEVL-SRLDIGDAIP 72 Query: 336 PVFYKAVAQLIYKIY 350 P Y VA+++ +Y Sbjct: 73 PELYAVVAEILAFVY 87 >gi|307946460|ref|ZP_07661795.1| type III secretion protein [Roseibium sp. TrichSKD4] gi|307770124|gb|EFO29350.1| type III secretion protein [Roseibium sp. TrichSKD4] Length = 99 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY AP + AKG +A ++ +IA E +PI ++P +A +L Q+ I+ IP Sbjct: 16 AVALRY--DNEGAPTVTAKGTGSVADRIEEIARESGVPIEQDPMMAEAL-SQIDIDEEIP 72 Query: 336 PVFYKAVAQLI 346 Y+AVA LI Sbjct: 73 IELYQAVAVLI 83 >gi|296162493|ref|ZP_06845284.1| type III secretion exporter [Burkholderia sp. Ch1-1] gi|295887306|gb|EFG67133.1| type III secretion exporter [Burkholderia sp. Ch1-1] Length = 246 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 11/248 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NK+EAP+ K+I A +G S ++ S L +YL F +P +Y++ ++L + + + Sbjct: 3 NKSEAPTPKRIRRARRDGEISKSTHLTVAFSGLCWWLYL-FIEAPHLYALGNELILRVTT 61 Query: 69 -ATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 R+ D S L +S + L + L + + L+Q +L V P Sbjct: 62 LDGSREFGDRLASTCAALYAFMSPVLAALGVGALAVLV-----PELMQTRGLLAWKRVMP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHSI 184 KR++ G+K+++S+ + + + + ++ ++ + +L + + + P + Sbjct: 117 DVKRLNPVNGLKQMFSLRLVWDTVLTIIQFTILLFLFVQALVAWLRQLAPIWTFSLPVHL 176 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 Y A +L M + IA V D W L+M K EIK E + G+P +K+ Sbjct: 177 GYAAVSHSHLLLWMTVSQIAP-GVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKS 235 Query: 245 RQKSIARS 252 R++++ R Sbjct: 236 RRRALHRE 243 >gi|220928169|ref|YP_002505078.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10] gi|219998497|gb|ACL75098.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10] Length = 98 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 +A AL+Y + AP +VA G+ IA+++ + A E N+P++++ +LA++L + I I Sbjct: 12 HAAALQYSPDTDSAPKIVAAGKGQIAERIIQKAQETNVPLYQDSNLAQTL-SSLCIGDEI 70 Query: 335 PPVFYKAVAQLI 346 PP Y+ VA+++ Sbjct: 71 PPEIYEVVAEIL 82 >gi|185177885|pdb|3BZL|C Chain C, Crystal Structural Of Native Escu C-Terminal Domain gi|185177887|pdb|3BZL|D Chain D, Crystal Structural Of Native Escu C-Terminal Domain gi|185177889|pdb|3BZO|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain gi|185177903|pdb|3C00|B Chain B, Crystal Structural Of The Mutated G247t EscuSPAS C- Terminal Domain Length = 83 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 45/75 (60%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|225620909|ref|YP_002722167.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae WA1] gi|225215729|gb|ACN84463.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae WA1] Length = 89 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y + ++AP++V+KG N +AK+M IA +H +P+ + A+ L Q+ I IP Sbjct: 11 AAALLYNREIHNAPIVVSKGNNYLAKRMVDIARKHKVPVISDEDTAKHLM-QLEIGEEIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+AV+ ++ IY Sbjct: 70 YSLYEAVSIILKYIY 84 >gi|153952619|ref|YP_001398106.1| FlhB domain-containing protein [Campylobacter jejuni subsp. doylei 269.97] gi|152940065|gb|ABS44806.1| FlhB domain protein [Campylobacter jejuni subsp. doylei 269.97] Length = 93 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L L K + + IP Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQ 85 >gi|57237689|ref|YP_178937.1| FlhB domain-containing protein [Campylobacter jejuni RM1221] gi|86150272|ref|ZP_01068499.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152177|ref|ZP_01070389.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153293|ref|ZP_01071497.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597543|ref|ZP_01100777.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121612445|ref|YP_001000532.1| FlhB domain-containing protein [Campylobacter jejuni subsp. jejuni 81-176] gi|148926549|ref|ZP_01810231.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp. jejuni CG8486] gi|157415115|ref|YP_001482371.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81116] gi|167005466|ref|ZP_02271224.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356346|ref|ZP_03223111.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562476|ref|YP_002344255.1| hypothetical protein Cj0848c [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283957164|ref|ZP_06374628.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 1336] gi|57166493|gb|AAW35272.1| FlhB domain protein [Campylobacter jejuni RM1221] gi|85839388|gb|EAQ56650.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840962|gb|EAQ58212.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843019|gb|EAQ60230.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249511|gb|EAQ72471.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88190135|gb|EAQ94110.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360182|emb|CAL34976.1| conserved hypothetical protein Cj0848c [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845243|gb|EDK22337.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp. jejuni CG8486] gi|157386079|gb|ABV52394.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345731|gb|EDZ32369.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp. jejuni CG8421] gi|283791340|gb|EFC30145.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 1336] gi|284926093|gb|ADC28445.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307747756|gb|ADN91026.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni M1] gi|315058298|gb|ADT72627.1| cytoplasmic domain of flagellar protein FhlB-like protein [Campylobacter jejuni subsp. jejuni S3] gi|315926508|gb|EFV05890.1| flhB domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929380|gb|EFV08585.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 93 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L L K + + IP Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQ 85 >gi|253998466|ref|YP_003050529.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4] gi|253985145|gb|ACT50002.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4] Length = 101 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y +T + AP +VAKG+ L+A+++ A EH++ + E L SL Q+ ++ Sbjct: 11 TQQAIALAY-ETGDFAPRVVAKGRGLVAEQIIARAREHDVFLHESKELV-SLLMQIDLDD 68 Query: 333 AIPPVFYKAVAQLIYKIY 350 IPP Y A+A+++ +Y Sbjct: 69 HIPPKLYMAIAEILAWLY 86 >gi|226326420|ref|ZP_03801938.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198] gi|225205203|gb|EEG87557.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198] Length = 145 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M K E+K E K G+P IK+ +K + + + M + ++ +I NPTH A+ + + Sbjct: 3 MEKHEVKQENKNMEGDPEIKSTRKQLHQELLDEPMKKVIRDSSAVIVNPTHVAVGIYFDP 62 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 P++ K N A ++ A E P+ P LAR ++ Sbjct: 63 DNGIMPLVSLKCVNAKALAVKSYAKEVGTPVVRYPELARKIY 104 >gi|222082192|ref|YP_002541557.1| type III secretion system translocation protein [Agrobacterium radiobacter K84] gi|221726871|gb|ACM29960.1| type III secretion system translocation protein [Agrobacterium radiobacter K84] Length = 268 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 16/271 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ND + K+ PS K++ EG S+E + S+LA YL + + Sbjct: 1 MSKNDDTEEKSLPPSRVKLDRLRREGQVARSKEIPVAISVLAIAAYLAWALGDILRDFAR 60 Query: 61 DLHVLLASA--TQRKLEDISHIVFLLTHLS-LSASRLVIPGLL-LFMMFGIGSYLIQRIP 116 V +A T D + +T+++ + L +P LL L + + Q P Sbjct: 61 IFGVGFEAAGLTGSPQADPGFPLTAVTNMAEILFGILWVPMLLGLAITIAVSILDGQGFP 120 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTM 173 V + H+ R++ GI +++S+ NLV F+K VK+IL+ G + F Sbjct: 121 V-STKHMNFDLNRLNPASGIMKLFSVTNLVEFLKGIVKVILLSVAGGGAVLYFLNGIFWA 179 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 A S+ H T+ V I + D+ S + + +M+K E + E Sbjct: 180 PLCGEACSLSVAAHLIGTIVVVAAAI---MLAAAFFDLSISRLLFRREHRMTKTEARREH 236 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264 K + G+P +K+ AR R+ +M A R Sbjct: 237 KDTQGDPHLKS-----ARRRVGAEMRNAPPR 262 >gi|57167848|ref|ZP_00366988.1| FlhB domain protein [Campylobacter coli RM2228] gi|305432127|ref|ZP_07401293.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20] gi|57020970|gb|EAL57634.1| FlhB domain protein [Campylobacter coli RM2228] gi|304444792|gb|EFM37439.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20] gi|315931143|gb|EFV10116.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 93 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L L K + + IP Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQ 85 >gi|289811230|ref|ZP_06541859.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 93 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 41/76 (53%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LARSLF +V Sbjct: 3 NPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVER 62 Query: 331 NSAIPPVFYKAVAQLI 346 IP ++ VA L+ Sbjct: 63 GDKIPETLFEPVAALL 78 >gi|56421679|ref|YP_148997.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426] gi|56381521|dbj|BAD77429.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426] Length = 98 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY ++ +P++VA+G +A+K+ ++A +H++PI E+P L ++L Q+ Sbjct: 14 MNGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHVPIQEDPLLVQNLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDRIPPQLYAVIA 85 >gi|95929897|ref|ZP_01312638.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas acetoxidans DSM 684] gi|95134193|gb|EAT15851.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas acetoxidans DSM 684] Length = 92 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 +P A+A++Y + DAP++VA G+ +A+ + + A + + I +P L L ++P+ Sbjct: 4 DPVKKAVAVKYDKEVADAPLIVASGKGQLAENIIQAAEKAGLEISHDPDLVE-LLAKIPV 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 S IP Y+AVA+++ +Y Sbjct: 63 GSEIPSELYQAVAEILAYVY 82 >gi|296273468|ref|YP_003656099.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299] gi|296097642|gb|ADG93592.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299] Length = 91 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL+Y ++ AP +VAKG +A + KIA E+NIPI ++ L L ++ +N IP Sbjct: 12 ALKYNMQDDTAPRVVAKGIGELASNIIKIAKENNIPIKKDEDLVE-LLTKLDVNQQIPNN 70 Query: 338 FYKAVAQLIYKIYH 351 YKAVA++ IY Sbjct: 71 LYKAVAEVFAFIYD 84 >gi|146307815|ref|YP_001188280.1| flagellar protein FhlB-like protein [Pseudomonas mendocina ymp] gi|145576016|gb|ABP85548.1| cytoplasmic domain of flagellar protein FhlB-like protein [Pseudomonas mendocina ymp] Length = 114 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +APVL AKG + +A+ + IA E+ +PI+E L R L ++ + AIP Sbjct: 13 AIALNY--DGQNAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 69 Query: 336 PVFYKAVAQLI 346 Y+ +A++I Sbjct: 70 EALYRCIAEII 80 >gi|328544226|ref|YP_004304335.1| cytoplasmic domain of flagellar protein FhlB-like protein [polymorphum gilvum SL003B-26A1] gi|326413968|gb|ADZ71031.1| Cytoplasmic domain of flagellar protein FhlB-like protein [Polymorphum gilvum SL003B-26A1] Length = 105 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKG+ +A+++ + A H +PI +P LA +L Q+ I+ IP Sbjct: 24 AVALHY--DKAGAPTVTAKGRGAVARRIEETARAHGVPIEADPLLAEAL-AQIEIDQEIP 80 Query: 336 PVFYKAVAQLI 346 Y+AVA LI Sbjct: 81 VELYQAVAVLI 91 >gi|218778848|ref|YP_002430166.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans AK-01] gi|218760232|gb|ACL02698.1| FlhB domain-containing protein [Desulfatibacillum alkenivorans AK-01] Length = 90 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++AP + A G+ +IA+K+ +A +H +P+ E+P L L ++ +N IP Sbjct: 8 AVALKYNALADNAPRVTATGKGIIAEKIIDLARKHGVPVQEDPDLVEVL-ARLDLNEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y VA+L+ +Y Sbjct: 67 AELYVVVAELLSFVY 81 >gi|261885341|ref|ZP_06009380.1| FlhB domain-containing protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 87 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +++P ++A G+ +A K+ + A +H IPI E+ L L K + IN IP Sbjct: 7 AVALGYNKKRDNSPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVEILSK-IDINQEIP 65 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ +Y Sbjct: 66 PNLYKAVAEVFSFLYR 81 >gi|220934523|ref|YP_002513422.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995833|gb|ACL72435.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7] Length = 94 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y + +AP + A G +A+++ +IA EH++P+ E+ L +L QVP+ Sbjct: 7 PPRKAVALHY--SGRNAPRVTASGVGQVAERILEIAREHDVPVHEDALLTAAL-SQVPLG 63 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y AVA+++ +Y Sbjct: 64 DEIPENLYVAVAEVLAFVY 82 >gi|320529139|ref|ZP_08030231.1| FlhB domain protein [Selenomonas artemidis F0399] gi|320138769|gb|EFW30659.1| FlhB domain protein [Selenomonas artemidis F0399] Length = 107 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+RY ++ AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP Sbjct: 23 AVAVRYDVEKDRAPRVTAKGRSLVADRILAEAKKNGIPVYQNKSLVNMLMA-LEIDREIP 81 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ +A+++ +Y Sbjct: 82 PELYRTIAEVLAHVY 96 >gi|89098659|ref|ZP_01171541.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911] gi|89086621|gb|EAR65740.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911] Length = 99 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +AP + AKG+ L A+ + + A EHNIPI E+ SL L ++ I+ IP Sbjct: 12 AVALSY-RDGQEAPKVKAKGKGLTAENILEKAKEHNIPIQEDASLVE-LLGKLNIDENIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA++ +Y Sbjct: 70 EELYQAVAEIFAFVY 84 >gi|224373751|ref|YP_002608123.1| flagellar basal body protein FlhB [Nautilia profundicola AmH] gi|223589598|gb|ACM93334.1| flagellar basal body protein FlhB [Nautilia profundicola AmH] Length = 87 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E +AP ++AKG+ +A+K+ + A +++P+F+ +LA L V + IP Sbjct: 4 AVALKYKAYEENAPKVLAKGKGELARKIIEKAKLYDVPLFQNETLADMLL-NVEVGEEIP 62 Query: 336 PVFYKAVAQLIYKIY 350 P YKAV + +Y Sbjct: 63 PKMYKAVVDVFIWLY 77 >gi|227871678|ref|ZP_03990091.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] gi|227842477|gb|EEJ52694.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] Length = 111 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y +N AP++VA G +A+K+ + A + +P++E+ SLA SL Q+ + + IP Sbjct: 12 AAALKYDNEKNGAPMIVAAGMGHMAEKITETAMKSGVPVYEDDSLA-SLLTQMKLGAEIP 70 Query: 336 PVFYKAVAQL 345 ++A+ ++ Sbjct: 71 EELFQAIVEI 80 >gi|169831979|ref|YP_001717961.1| flagellar protein FhlB-like cytoplasmic domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638823|gb|ACA60329.1| flagellar protein FhlB-like cytoplasmic domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 117 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y + P +VA G+ L A ++ ++A +P++ +P LA +L + ++ IP Sbjct: 19 AAALTYEDGPDAVPRVVAVGKGLFAARIEEVARASGVPVYRDPQLAWTL-AGLGLDREIP 77 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ VAQ+I +Y+ Sbjct: 78 PELYQVVAQVIAWVYY 93 >gi|73538920|ref|YP_299287.1| putative flagellar protein [Ralstonia eutropha JMP134] gi|72122257|gb|AAZ64443.1| putative flagellar protein [Ralstonia eutropha JMP134] Length = 93 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y QT++ AP +VAKG ++A+ + A E + + P+L +L QV ++S IP Sbjct: 11 AIALSY-QTDDKAPRVVAKGYGVVAEAIIARAREAGVYVHGSPTLV-NLLMQVDLDSHIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 P Y A+A+L+ +Y Sbjct: 69 PQLYVAIAELLAWLYQ 84 >gi|330502794|ref|YP_004379663.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01] gi|328917080|gb|AEB57911.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01] Length = 113 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y APVL AKG + +A+ + IA E+ +PI+E L R L ++ + AIP Sbjct: 12 AIALNY--DGQSAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLI 346 Y+ +A++I Sbjct: 69 EALYRCIAEII 79 >gi|86749459|ref|YP_485955.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris HaA2] gi|86572487|gb|ABD07044.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris HaA2] Length = 89 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 5/81 (6%) Query: 266 TIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 T+ I N A+AL Y + AP +VAKG+ I K+ ++A EHN+PI E LA +L Sbjct: 2 TVSIKN--QIAVALYY--DKGGAPRVVAKGRGTIGAKIIEVAKEHNVPIEENEVLAGAL- 56 Query: 326 KQVPINSAIPPVFYKAVAQLI 346 V + IP YKAVA+++ Sbjct: 57 SHVELGDEIPEELYKAVAEVL 77 >gi|311695179|gb|ADP98052.1| flagellar protein FhlB cytoplasmic domain protein [marine bacterium HP15] Length = 104 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP + A G + +A+++ +IA EHN+P++E LA S+ ++ +N IP Sbjct: 12 AVALKYDGEK--APTISATGTHELAEEIIRIAREHNVPLYENAELA-SILARLSLNEEIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ +A+++ +H Sbjct: 69 ESLYRVIAEILAFAFH 84 >gi|312959804|ref|ZP_07774320.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] gi|311285970|gb|EFQ64535.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] Length = 109 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T + A+AL+Y AP L AKG + +A+ + K+A E+ +PI+E L + L ++ Sbjct: 4 TESSRQAIALKY--DGQQAPTLTAKGDDALAEAILKLARENEVPIYENAELVK-LLARME 60 Query: 330 INSAIPPVFYKAVAQLI 346 + +IP Y+ +A++I Sbjct: 61 LGDSIPEELYRTIAEII 77 >gi|207093353|ref|ZP_03241140.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori HPKX_438_AG0C1] gi|207108746|ref|ZP_03242908.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori HPKX_438_CA4C1] Length = 90 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N T A AL Y ++ AP ++A G +AK++ + A E+NI +F P L SL K V + Sbjct: 2 NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYNIALFSNPMLVDSLLK-VEL 60 Query: 331 NSAIPPVFYKAVAQL 345 + AIP Y++V Q+ Sbjct: 61 DCAIPEELYESVVQV 75 >gi|237653555|ref|YP_002889869.1| flagellar related protein [Thauera sp. MZ1T] gi|237624802|gb|ACR01492.1| flagellar related protein [Thauera sp. MZ1T] Length = 114 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP +VAKG+ ++A+++ + A E + + E P L +L QV +++ IP Sbjct: 12 AVALAYTAGEA-APRVVAKGKGVVAREILERAREAGVFVHESPELV-ALLMQVDLDARIP 69 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 70 PQLYVAVAELLAWLY 84 >gi|167770250|ref|ZP_02442303.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM 17241] gi|167667572|gb|EDS11702.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ AP+++A G +A+++ +A + IP+F + S A SL + + S IP Sbjct: 9 AVALKYNAEEDVAPIVIASGYGELAQRIIDVAEKQGIPVFRDDS-AVSLMCMLEVGSNIP 67 Query: 336 PVFYKAVAQL 345 P Y+ VA + Sbjct: 68 PELYQVVAAI 77 >gi|110632475|ref|YP_672683.1| type III secretion exporter [Mesorhizobium sp. BNC1] gi|110283459|gb|ABG61518.1| type III secretion exporter [Chelativorans sp. BNC1] Length = 339 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 78/330 (23%), Positives = 134/330 (40%), Gaps = 30/330 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISR---EASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 KTEAP+ +++E+ EG P + EA+L + ++ LI+L S + ++++ + Sbjct: 3 GEKTEAPTPRRLEERRREGQVPQRKNIIEAALLTFVVVLLIWLFRPLSEALLNLSAAV-- 60 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH-- 122 ISH + T SL A+ V+ +L S L + LN Sbjct: 61 ---------FSSISHDLEAATATSLVAAMPVVHWMLAICG---ASALFTLLLSCVLNKFM 108 Query: 123 -----VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + P F+R + IK I+S L +FM+ V V I N L Sbjct: 109 FAPKALAPKFERFNPVGQIKSIFSKATLYSFMRMIVLFTAVSAIFIYLYVANMDNSLQ-A 167 Query: 178 SANPHSILYHAFFTVRKVLIM-ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 S + LY F + +L+ +L + L ++D + S+ KM+K+E+K E K Sbjct: 168 SHCGEACLYDLFTSRIGMLVAAVLGVLIVLALIDYKIQDRMFISQNKMTKEEVKREYKDQ 227 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+ IK +KSIA + ++ ++ + + A+ + P LV K Sbjct: 228 EGDREIKAGRKSIALNDAAAPLLSESTH----VVHSDQVLAAVIFYPGAGYPPYLVFKAM 283 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 + + NIP F P A ++ Sbjct: 284 GASVPGLCRKFLAMNIPTFNVPGAALEFYR 313 >gi|225174800|ref|ZP_03728798.1| cytoplasmic domain of flagellar protein FhlB-like protein [Dethiobacter alkaliphilus AHT 1] gi|225169927|gb|EEG78723.1| cytoplasmic domain of flagellar protein FhlB-like protein [Dethiobacter alkaliphilus AHT 1] Length = 89 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + ++DAP +VA+G IA+++ +A EH +P+ + LA +L P IP Sbjct: 9 AVALQYQEEKDDAPRVVARGAGKIAEQILLLAQEHGVPVKQSKVLAETLSLVEP-GDEIP 67 Query: 336 PVFYKAVAQLIYKI 349 Y AVAQ++ ++ Sbjct: 68 EGLYLAVAQIMSEV 81 >gi|291277367|ref|YP_003517139.1| putative flagellar biosynthesis protein flhB2 [Helicobacter mustelae 12198] gi|290964561|emb|CBG40414.1| putative flagellar biosynthesis protein flhB2 [Helicobacter mustelae 12198] Length = 89 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y +N AP +VA G+ IA+++ + A E+++P+F +L SL + I+S IP Sbjct: 4 AAALAYAPYQNSAPKVVASGKGTIAEQIIQKAREYDVPLFSNTALVDSLIG-IEIDSQIP 62 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ V ++ + H Sbjct: 63 PELYQGVVEVFIWLEH 78 >gi|292670874|ref|ZP_06604300.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541] gi|292647495|gb|EFF65467.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541] Length = 110 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP Sbjct: 25 AVAIKYDVKNDQAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 83 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ +A+++ +Y Sbjct: 84 PELYRTIAEVLAHVY 98 >gi|229589274|ref|YP_002871393.1| hypothetical protein PFLU1756 [Pseudomonas fluorescens SBW25] gi|229361140|emb|CAY48003.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 109 Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL+Y AP L A+G + +A+ + K+A E+ +PI+E L + L ++ + Sbjct: 6 PPRQAIALKY--DGQQAPTLTARGDDALAEAILKLARENEVPIYENAELVK-LLARMELG 62 Query: 332 SAIPPVFYKAVAQLI 346 +IP Y+ +A++I Sbjct: 63 DSIPEELYRTIAEII 77 >gi|194292856|ref|YP_002008763.1| flagellar protein [Cupriavidus taiwanensis LMG 19424] gi|193226760|emb|CAQ72711.1| putative flagellar protein [Cupriavidus taiwanensis LMG 19424] Length = 96 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + AP +VAKG ++A+ + A E + + + P+L +L QV ++S IP Sbjct: 11 AVALSY-QPSDKAPRIVAKGYGVVAEAIIARAKEAGVYVHDSPTLV-NLLMQVDLDSQIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 P Y AVA+L+ +Y Sbjct: 69 PQLYVAVAELLAWLYQ 84 >gi|225569990|ref|ZP_03779015.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM 15053] gi|225161460|gb|EEG74079.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM 15053] Length = 117 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + +PV+VA G +A+K+ + A + +P++E+ SLA +L Q+ + S IP Sbjct: 12 AVALTYDEDKQASPVIVASGMGYLAEKIVETAEKSGVPVYEDNSLA-TLLTQLDLGSEIP 70 Query: 336 PVFYKAVAQL-IYKIYHK 352 Y+A+ + IY + +K Sbjct: 71 EELYQAIVDIYIYFLNYK 88 >gi|185177895|pdb|3BZV|B Chain B, Crystal Structural Of The Mutated T264a Escu C-Terminal Domain Length = 83 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P H A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 1 PAHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|297530618|ref|YP_003671893.1| type III secretion exporter [Geobacillus sp. C56-T3] gi|297253870|gb|ADI27316.1| type III secretion exporter [Geobacillus sp. C56-T3] Length = 95 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP++ AKG +A+ + A +H +PI ++P+L L +V IN IP Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINETIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+L +Y Sbjct: 67 EELYALVAELFAFLYQ 82 >gi|295111515|emb|CBL28265.1| Flagellar biosynthesis pathway, component FlhB [Synergistetes bacterium SGP1] Length = 95 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +AP + A+G+ IA+K+ + A E ++P+ E+ +L +L + + IP Sbjct: 9 AVALKYDRETMNAPTVTARGEGFIARKIVERALEADVPVLEDAALVSALL-SLELGEEIP 67 Query: 336 PVFYKAVAQLIYKIY 350 Y VA+++ +Y Sbjct: 68 AELYTVVARVLTWVY 82 >gi|163856461|ref|YP_001630759.1| hypothetical protein Bpet2150 [Bordetella petrii DSM 12804] gi|163260189|emb|CAP42491.1| hypothetical protein predicted by Glimmer/Critica [Bordetella petrii] Length = 104 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VAKG IA + + A EH + + E L SL QV +++ IP Sbjct: 16 AVALSYGE-HDTAPRVVAKGYGQIADTIVRTAREHGLYVHESRELV-SLLMQVDLDAHIP 73 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 74 PQLYAAVAELLAWLY 88 >gi|313896280|ref|ZP_07829833.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975079|gb|EFR40541.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 107 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+RY ++ AP + AKG++ +A ++ A ++ IP+++ SL L + I+ IP Sbjct: 23 AVAVRYDVEKDRAPRVTAKGRSFVADRILAEAKKNGIPVYQNKSLVNMLMA-LEIDREIP 81 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ +A+++ +Y Sbjct: 82 PELYRTIAEVLAHVY 96 >gi|45657435|ref|YP_001521.1| flagellar biosynthetic transmembrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600674|gb|AAS70158.1| flagellar biosynthetic transmembrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 87 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL++I +++APV+ A + +R IA ++++P + P LA SL ++PI S IP Sbjct: 3 SVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVPTVKNPILAESL-SELPIGSEIP 61 Query: 336 PVFYKAVAQL 345 Y+AV + Sbjct: 62 ENLYRAVGAI 71 >gi|185177899|pdb|3BZY|B Chain B, Crystal Structure Of The Mutated Y316d Escu C-Terminal Domain Length = 83 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL K + Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|149928166|ref|ZP_01916412.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105] gi|149823151|gb|EDM82389.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105] Length = 95 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y++ + AP +VAKGQ LIA+++ + A E + + E L SL V ++ IP Sbjct: 10 AVALAYLE-HSGAPKVVAKGQGLIAEQIIQKAKESGVFVHESRELV-SLLMNVDLDQQIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+A+A+L+ +Y Sbjct: 68 PGLYQAIAELLAWVYQ 83 >gi|56419742|ref|YP_147060.1| hypothetical protein GK1207 [Geobacillus kaustophilus HTA426] gi|56379584|dbj|BAD75492.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 95 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP++ AKG +A+ + A +H +PI ++P+L L +V IN IP Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINEMIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+L +Y Sbjct: 67 EELYALVAELFAFLYQ 82 >gi|168698715|ref|ZP_02730992.1| FlhB domain protein [Gemmata obscuriglobus UQM 2246] Length = 89 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ AP +VAKG+ A+++ +A ++ +P+ E+P+L + L ++ ++ IP Sbjct: 9 AVALSYDPAKDRAPKVVAKGKGRTAEQILALARKNAVPVREDPTLVQVL-SRLKVDQEIP 67 Query: 336 PVFYKAVAQLI 346 P Y+AVA ++ Sbjct: 68 PEVYRAVALIL 78 >gi|196247653|ref|ZP_03146355.1| flagellar biosynthesis [Geobacillus sp. G11MC16] gi|196212437|gb|EDY07194.1| flagellar biosynthesis [Geobacillus sp. G11MC16] Length = 95 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++APV+ AKG +A+ + +A ++ + + ++PSL L +V IN AIP Sbjct: 8 AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+L +Y Sbjct: 67 EGLYALVAELFAFLYQ 82 >gi|291562062|emb|CBL40878.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [butyrate-producing bacterium SS3/4] Length = 103 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 47/70 (67%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ APV+VA G +A+K+ + A + +P++E+ SLA +L ++ + +A+P Sbjct: 12 AVALQYSPEKDTAPVIVASGMGYMAEKITEAARKSGVPVYEDDSLA-TLLSRLQLGAAVP 70 Query: 336 PVFYKAVAQL 345 Y+A+ ++ Sbjct: 71 EELYQAIIEI 80 >gi|312879569|ref|ZP_07739369.1| type III secretion exporter [Aminomonas paucivorans DSM 12260] gi|310782860|gb|EFQ23258.1| type III secretion exporter [Aminomonas paucivorans DSM 12260] Length = 94 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + APV+VA G+ ++A+++ +IA E IP+ E+ +L +L + + IP Sbjct: 10 AAALRYEEGHESAPVVVASGKGVLAERIVEIAREAQIPVVEDAALVSAL-LALELGEEIP 68 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ +Y Sbjct: 69 PELYQAVARVLVFVY 83 >gi|291288699|ref|YP_003505515.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM 12809] gi|290885859|gb|ADD69559.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM 12809] Length = 90 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A A+RY + + P LVAKGQ LIA K+ A EH++ I E+ L +L + + IP Sbjct: 8 AAAIRYDKDIDKVPKLVAKGQGLIADKIIAKAKEHDVHITEDKDLVEAL-STLDLYEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 YK VA L+ ++Y Sbjct: 67 EELYKVVAYLLAELY 81 >gi|209884850|ref|YP_002288707.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] gi|209873046|gb|ACI92842.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] Length = 91 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P LA+ AP +VAKG+ IA+K+ ++A EH++ I E LA +L V Sbjct: 5 TTPIQNTLAVALHYDRKGAPRVVAKGKGEIARKIIEVAAEHDVAIEENEILAGAL-SNVE 63 Query: 330 INSAIPPVFYKAVAQLI 346 I IP YKAVA+++ Sbjct: 64 IGDEIPAELYKAVAEVL 80 >gi|118587806|ref|ZP_01545216.1| flhB-related protein [Stappia aggregata IAM 12614] gi|118439428|gb|EAV46059.1| flhB-related protein [Stappia aggregata IAM 12614] Length = 94 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y APV+ AKG +A+++ ++A E +PI + P +A +L Q+ ++ IP Sbjct: 12 AVALQY--ESEGAPVVTAKGTGSMAEQIERLAREAGVPIEQNPMMAEAL-SQIEVDQEIP 68 Query: 336 PVFYKAVAQLI 346 Y+AVA LI Sbjct: 69 IELYQAVAVLI 79 >gi|332284044|ref|YP_004415955.1| putative flagellar protein [Pusillimonas sp. T7-7] gi|330427997|gb|AEC19331.1| putative flagellar protein [Pusillimonas sp. T7-7] Length = 99 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y + AP +VAKG +A+ + + A EH + + E P L L QV +++ IP Sbjct: 15 AVAVTY-DKHDAAPRVVAKGYGTVAENIIRSAKEHGLHVHESPELV-GLLMQVDLDAHIP 72 Query: 336 PVFYKAVAQLIYKIY 350 P Y A+A+L+ +Y Sbjct: 73 PELYLAIAELLAWLY 87 >gi|325982832|ref|YP_004295234.1| type III secretion exporter [Nitrosomonas sp. AL212] gi|325532351|gb|ADZ27072.1| type III secretion exporter [Nitrosomonas sp. AL212] Length = 109 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T ALA R Q AP ++AKG+ LIA+++ + A E NI + E L +L QV ++ Sbjct: 9 TAVALAYREGQI---APKVIAKGRGLIAQEIIRRAKEANIYVHESSELV-ALLMQVNLDD 64 Query: 333 AIPPVFYKAVAQLIYKIYH 351 IPP Y AVA+L+ +Y Sbjct: 65 RIPPQLYVAVAELLAWLYR 83 >gi|138894728|ref|YP_001125181.1| flagellar biosynthesis protein [Geobacillus thermodenitrificans NG80-2] gi|134266241|gb|ABO66436.1| Flagellar biosynthesis [Geobacillus thermodenitrificans NG80-2] Length = 98 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++APV+ AKG +A+ + +A ++ + + ++PSL L +V IN AIP Sbjct: 11 AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+L +Y Sbjct: 70 EGLYALVAELFAFLYQ 85 >gi|330960251|gb|EGH60511.1| FlhB domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 107 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Query: 269 ITNPTH---YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +T P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L Sbjct: 1 MTPPDHSPRQAIALSY--DGQSAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|320354269|ref|YP_004195608.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032] gi|320122771|gb|ADW18317.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032] Length = 102 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + AP ++A G NLIA+K+ A E + I E+ L L ++P+ IP Sbjct: 11 AVALLYDQDKGTAPKVIASGSNLIAEKIIATAMEAGVHIREDKDLVE-LLAKIPLGQEIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+ +A+++ +Y Sbjct: 70 VELYQTIAEVLAFVY 84 >gi|317051555|ref|YP_004112671.1| type III secretion exporter [Desulfurispirillum indicum S5] gi|316946639|gb|ADU66115.1| type III secretion exporter [Desulfurispirillum indicum S5] Length = 128 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y Q ++ AP++ AKGQ +A+ + A EH + I E+P L +L + I+ IP Sbjct: 47 AVALKY-QDKSRAPLVSAKGQGHVAEAIIDKAREHGVAIHEDPDLVVAL-SALEIDQEIP 104 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA+++ +Y + Sbjct: 105 EELYQAVAEVLAFLYKQ 121 >gi|115525542|ref|YP_782453.1| type III secretion protein [Rhodopseudomonas palustris BisA53] gi|115519489|gb|ABJ07473.1| type III secretion protein [Rhodopseudomonas palustris BisA53] Length = 88 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q AP++VAKG+ I K+ ++A H++PI E LA +L K V + IP Sbjct: 10 AIALHYDQL--GAPLVVAKGKGAIGAKIIEVAKAHDVPIEENEVLAGALSK-VELGEEIP 66 Query: 336 PVFYKAVAQLI 346 YKAVA+++ Sbjct: 67 QELYKAVAEVL 77 >gi|185177901|pdb|3BZZ|B Chain B, Crystal Structural Of The Mutated R313t EscuSPAS C- Terminal Domain Length = 83 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LA SL+K + Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLATSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|226944518|ref|YP_002799591.1| flagellar protein [Azotobacter vinelandii DJ] gi|226719445|gb|ACO78616.1| flagellar protein [Azotobacter vinelandii DJ] Length = 94 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ALAL Y + + AP +VAKG +A+++ A+ +P+ P L L QV +++ IP Sbjct: 11 ALALSYAEGDA-APRVVAKGYGRLAERIVAEAHRQGVPVHAAPELV-GLLMQVDLDAQIP 68 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ VA+L+ Y Sbjct: 69 PQLYQVVAELLVWAY 83 >gi|83589852|ref|YP_429861.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073] gi|83572766|gb|ABC19318.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073] Length = 94 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E+ AP +VA G+ IA K+ A E +PI + LA + + + S IP Sbjct: 10 AVALRYNSEEDKAPRVVASGRGAIADKIITAAREAGVPIHRDTHLAE-MLAGLDVGSEIP 68 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA+++ IY Sbjct: 69 VELYQMVAEILVFIY 83 >gi|304436819|ref|ZP_07396785.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370191|gb|EFM23850.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 103 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP Sbjct: 18 AVAIKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ +A+++ +Y Sbjct: 77 PELYRTIAEVLAHVY 91 >gi|288940399|ref|YP_003442639.1| type III secretion exporter [Allochromatium vinosum DSM 180] gi|288895771|gb|ADC61607.1| type III secretion exporter [Allochromatium vinosum DSM 180] Length = 122 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL + AP + A G L A+++ KIA EH+IP+ +P L +L Q+P+ + Sbjct: 10 TTKAVALHW--DREHAPRITATGTGLTAEQILKIAEEHDIPLRADPVLVEAL-AQIPLGA 66 Query: 333 AIPPVFYKAVAQLIYKIY 350 IP Y AVA+++ ++ Sbjct: 67 EIPRALYVAVAEVLAFVF 84 >gi|196249409|ref|ZP_03148107.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp. G11MC16] gi|196211166|gb|EDY05927.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp. G11MC16] Length = 98 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY +T AP +VA+G +A+K+ ++A +H++ I E+P L + L Q+ Sbjct: 14 MNGPT--AAVIRYDETSGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDRIPPQLYAVIA 85 >gi|154250425|ref|YP_001411250.1| flagellar biosynthetic protein (FlhB)-like protein [Fervidobacterium nodosum Rt17-B1] gi|154154361|gb|ABS61593.1| flagellar biosynthetic protein (FlhB)-like protein [Fervidobacterium nodosum Rt17-B1] Length = 96 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ AP +VAKG+ +A+ + K A E N+PI + P L LF+ + I IP Sbjct: 18 AVALKYQMGKDFAPFVVAKGRCQLAEAIIKKAEESNVPIVKSPDLVEELFR-LDILEMIP 76 Query: 336 PVFYKAVAQLI 346 Y AVA+++ Sbjct: 77 SKLYVAVAEVL 87 >gi|78224352|ref|YP_386099.1| FlhB domain-containing protein [Geobacter metallireducens GS-15] gi|78195607|gb|ABB33374.1| FlhB domain protein, putative [Geobacter metallireducens GS-15] Length = 94 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VAKG + A+ + A E + + E P+L L QV I+ IP Sbjct: 10 AVALSYREGQY-APQVVAKGHGVTAEAIIACAREAGVFVHESPALVSQLM-QVDIDHYIP 67 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+L+ +Y Sbjct: 68 PELYRAVAELLAWLY 82 >gi|39936268|ref|NP_948544.1| Type III secretion proteins related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris CGA009] gi|39650123|emb|CAE28646.1| Type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris CGA009] Length = 91 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 + T T ALA+ AP +VAKG+ ++ K+ ++A +H+IPI E LA +L Sbjct: 1 MTTTDTKNALAIALHYDYAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SH 59 Query: 328 VPINSAIPPVFYKAVAQLI 346 V + IP YKAVA+++ Sbjct: 60 VELGDEIPEELYKAVAEVL 78 >gi|289208366|ref|YP_003460432.1| type III secretion exporter [Thioalkalivibrio sp. K90mix] gi|288943997|gb|ADC71696.1| type III secretion exporter [Thioalkalivibrio sp. K90mix] Length = 119 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL + + AP + A G + A+++ +IA EH IP+ ++P L +L QVP+ +P Sbjct: 25 AVALEWDR--QRAPRITASGSGVTAEQILRIAEEHGIPLHQDPGLTEAL-AQVPLGEEVP 81 Query: 336 PVFYKAVAQLIYKIY 350 Y AVA+++ I+ Sbjct: 82 ESLYVAVAEVLAFIF 96 >gi|185177914|pdb|3C03|C Chain C, Crystal Structure Of The Escu C-Terminal Domain With P263a Mutation,Space Group P 1 21 1 Length = 83 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 44/74 (59%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 2 THIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQ 61 Query: 333 AIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 62 YITEDFFEPVAQLI 75 >gi|89094428|ref|ZP_01167368.1| probable flagellar biosynthesis-related protein [Oceanospirillum sp. MED92] gi|89081320|gb|EAR60552.1| probable flagellar biosynthesis-related protein [Oceanospirillum sp. MED92] Length = 109 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y Q AP++VAKG IA+++ +A E+ I I E P L L + + + IP Sbjct: 15 AIALKYDQELGKAPLIVAKGMGEIAEQIINLAEENGIHIHESPELVEVLIR-LELGDEIP 73 Query: 336 PVFYKAVAQLI---YKIYHKK 353 Y+A+A++I Y + H + Sbjct: 74 ESLYRAIAEVIAFAYSLKHSQ 94 >gi|49089132|gb|AAT51646.1| PA1473 [synthetic construct] Length = 112 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|116049416|ref|YP_791781.1| FlhB domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390161|ref|ZP_06879636.1| FlhB domain-containing protein [Pseudomonas aeruginosa PAb1] gi|115584637|gb|ABJ10652.1| putative FlhB domain protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 111 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|15596670|ref|NP_250164.1| hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1] gi|107100906|ref|ZP_01364824.1| hypothetical protein PaerPA_01001936 [Pseudomonas aeruginosa PACS2] gi|218892654|ref|YP_002441523.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58] gi|254234571|ref|ZP_04927894.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719] gi|254239822|ref|ZP_04933144.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192] gi|313106471|ref|ZP_07792702.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa 39016] gi|9947426|gb|AAG04862.1|AE004576_11 hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1] gi|126166502|gb|EAZ52013.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719] gi|126193200|gb|EAZ57263.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192] gi|218772882|emb|CAW28694.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58] gi|310879204|gb|EFQ37798.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa 39016] Length = 111 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|238926781|ref|ZP_04658541.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] gi|238885313|gb|EEQ48951.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] Length = 103 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP Sbjct: 18 AVAVKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ +A+++ +Y Sbjct: 77 PELYRTIAEVLAHVY 91 >gi|283954420|ref|ZP_06371940.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414] gi|283794037|gb|EFC32786.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414] Length = 93 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A E+ +PI E+ L L K + + IP Sbjct: 11 AVALGYQREKNSAPKVLASGKGESAAKIISLAKEYGVPIKEDEDLIEILSK-LDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQ 85 >gi|92114151|ref|YP_574079.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens DSM 3043] gi|91797241|gb|ABE59380.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens DSM 3043] Length = 101 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + APV+VAKG +A+++ + A I + + P L +L QV +++ IP Sbjct: 11 AVALAY-QDASAAPVVVAKGYGELAERIVEKAKHEGIFVHDAPELV-ALLMQVDMDAEIP 68 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ +A+L+ +Y Sbjct: 69 PTLYQVIAELLAWVY 83 >gi|26991019|ref|NP_746444.1| FlhB domain-containing protein [Pseudomonas putida KT2440] gi|24986048|gb|AAN69908.1|AE016629_10 FlhB domain protein [Pseudomonas putida KT2440] Length = 112 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ Sbjct: 4 TTPRQ-AIALNY--DGHQAPTLTAKGDEDLAEAILALAREHEVPIYENAELVR-LLARLE 59 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 + IP Y +A++I +H Sbjct: 60 LGEQIPEALYLTIAEIIAFAWH 81 >gi|239817130|ref|YP_002946040.1| flagellar biosynthesis protein [Variovorax paradoxus S110] gi|239803707|gb|ACS20774.1| flagellar biosynthesis protein [Variovorax paradoxus S110] Length = 97 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL + T APV+VAKG + A+ + + A E+ + + P L R L QV ++ Sbjct: 7 PRQSAVALSHADTAK-APVVVAKGYGVTAESILRQARENGVYVHASPDLIR-LLMQVDLD 64 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IPP Y AVA+++ I+ Sbjct: 65 RQIPPQLYLAVAEVMAWIH 83 >gi|118581817|ref|YP_903067.1| FlhB domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504527|gb|ABL01010.1| FlhB domain protein [Pelobacter propionicus DSM 2379] Length = 108 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 269 ITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +TNP A A+ Y Q APV+VA+G+ ++A+ + A E + I E P L + L Sbjct: 1 MTNPDSDERKAAAISYKQGYY-APVVVARGKGVMAEAIIACAREAGVYIHESPELVQ-LL 58 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIY 350 QV + IPP Y+AVA+++ +Y Sbjct: 59 MQVDTDQFIPPELYRAVAEVLVWLY 83 >gi|239828347|ref|YP_002950971.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] gi|239808640|gb|ACS25705.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] Length = 98 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 I PT A +RY + +P +VA+G +A+K+ ++A +HN+ I E+P L ++L + Sbjct: 14 INGPT--AAVIRYDEETGKSPTVVAQGTGYVAQKIIELAKQHNVHIQEDPLLVQNLLN-L 70 Query: 329 PINSAIPPVFYKAVA 343 + +IPP Y +A Sbjct: 71 DLGDSIPPQLYAVIA 85 >gi|313497828|gb|ADR59194.1| Flagellar protein FhlB-like protein [Pseudomonas putida BIRD-1] Length = 112 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ Sbjct: 4 TTPRQ-AIALNY--DGHQAPTLTAKGDEELAEAILALAREHEVPIYENAELVR-LLARLE 59 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 + IP Y +A++I +H Sbjct: 60 LGDQIPEALYLTIAEIIAFAWH 81 >gi|78485097|ref|YP_391022.1| flagellar protein FhlB-like protein [Thiomicrospira crunogena XCL-2] gi|78363383|gb|ABB41348.1| FlhB domain protein [Thiomicrospira crunogena XCL-2] Length = 104 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI- 346 AP + AKG +A+++ K+A E+NIPI E+ L + L QV ++ IP + Y+AV Q++ Sbjct: 25 APKVTAKGSGTLAEQIIKVAKENNIPITEDHDLVQ-LLAQVELDQEIPELLYEAVVQVLI 83 Query: 347 --YKIYHKKI 354 Y++ K+I Sbjct: 84 FAYQLSEKEI 93 >gi|186477673|ref|YP_001859143.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815] gi|184194132|gb|ACC72097.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815] Length = 112 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 ++AP +VAKG L+A + + A E + + E P + SL QV ++S IPP Y+AVA+L Sbjct: 20 DEAPRVVAKGYGLVADMIVQRAKEAGLYVHESPDMV-SLLMQVDLDSRIPPRLYQAVAEL 78 Query: 346 I 346 + Sbjct: 79 L 79 >gi|229824938|ref|ZP_04451007.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC 49176] gi|229790941|gb|EEP27055.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC 49176] Length = 97 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +AP ++A G+ +A+K+ + +++IP +E+ L +SL Q+ I IP Sbjct: 10 AVALGYDTESGEAPYVIAAGKGALAEKIISESKKNDIPQYEDEKLVKSL-SQLEIGENIP 68 Query: 336 PVFYKAVAQLI 346 P Y+ VAQ++ Sbjct: 69 PELYEVVAQVL 79 >gi|160939648|ref|ZP_02086996.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC BAA-613] gi|158437439|gb|EDP15203.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC BAA-613] Length = 130 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E+ +PV++A G +A+ + IA + IP+F++ S A SL + + S IP Sbjct: 9 AVALRYNVDEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGSNIP 67 Query: 336 PVFYKAVAQLIYKI 349 Y+ VA + K+ Sbjct: 68 VELYEVVAAIYCKL 81 >gi|91776332|ref|YP_546088.1| putative flagellar biosynthetic protein [Methylobacillus flagellatus KT] gi|91710319|gb|ABE50247.1| putative flagellar biosynthetic protein [Methylobacillus flagellatus KT] Length = 102 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ + AP +VAKG+ +IA+++ A EH + + E L +L QV ++ IP Sbjct: 10 AIALAY-ESGDFAPRVVAKGRGVIAEQIIAKAKEHGVFVHESRELL-ALLMQVDLDDHIP 67 Query: 336 PVFYKAVAQLIYKIY 350 P Y+A+A+++ +Y Sbjct: 68 PALYQAIAEILAWLY 82 >gi|92117130|ref|YP_576859.1| type III secretion protein [Nitrobacter hamburgensis X14] gi|91800024|gb|ABE62399.1| type III secretion protein [Nitrobacter hamburgensis X14] Length = 89 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG+ + K+ ++A EH+IPI E LA +L V + IP Sbjct: 10 AVALHY-DKGSGAPRVVAKGRGSLGAKIIEVAREHDIPIEENEVLAGAL-SHVELGDEIP 67 Query: 336 PVFYKAVAQLI 346 YKAVA+++ Sbjct: 68 SELYKAVAEVL 78 >gi|302878303|ref|YP_003846867.1| type III secretion exporter [Gallionella capsiferriformans ES-2] gi|302581092|gb|ADL55103.1| type III secretion exporter [Gallionella capsiferriformans ES-2] Length = 97 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 5/86 (5%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A+AL Y QT AP +VA+G+ LIA+ + + A ++ + + E L L QV + Sbjct: 4 NSQQAAVALAYGQTSG-APKVVARGRGLIAQAIIERAKQNGVYVHESADLV-GLLMQVEL 61 Query: 331 NSAIPPVFYKAVAQL---IYKIYHKK 353 + IPP Y AVA+L +Y++ H++ Sbjct: 62 DEQIPPQLYLAVAELLAWLYRLEHEE 87 >gi|185177897|pdb|3BZX|B Chain B, Crystal Structure Of The Mutated H265a Escu C-Terminal Domain Length = 83 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PT A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 1 PTAIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|77457802|ref|YP_347307.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf0-1] gi|77381805|gb|ABA73318.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 112 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T A+AL+Y N AP L AKG +A+++ +IA + +PI+E L + L ++ Sbjct: 4 TTAPRQAIALKY--DGNHAPTLTAKGDEELAEEILRIARDCEVPIYENAELVK-LLARME 60 Query: 330 INSAIPPVFYKAVAQLI 346 + +IP Y+ +A++I Sbjct: 61 LGDSIPEELYRTIAEII 77 >gi|323152630|gb|EFZ38906.1| flagellar biosynthetic flhB domain protein [Escherichia coli EPECa14] Length = 169 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 35/175 (20%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55 +D D+KTEAP+ ++E A EG P SRE +S+L L+ + + G+ Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 56 ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 +S+ +D +++L E + ++ L++ + L A L+ P M+ G Sbjct: 59 MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISP----VMLGG 112 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161 + V + ++P F +++ GIKR++S +K+ +K ILVG++ Sbjct: 113 L---------VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSV 158 >gi|28870794|ref|NP_793413.1| FlhB domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213968921|ref|ZP_03397061.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1] gi|301385357|ref|ZP_07233775.1| FlhB domain protein [Pseudomonas syringae pv. tomato Max13] gi|302061231|ref|ZP_07252772.1| FlhB domain protein [Pseudomonas syringae pv. tomato K40] gi|302133130|ref|ZP_07259120.1| FlhB domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854043|gb|AAO57108.1| FlhB domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213926220|gb|EEB59775.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1] gi|330879117|gb|EGH13266.1| FlhB domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967862|gb|EGH68122.1| FlhB domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015905|gb|EGH95961.1| FlhB domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 107 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +T P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L Sbjct: 1 MTLPDHVPRQAIALSY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|88812111|ref|ZP_01127363.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Nitrococcus mobilis Nb-231] gi|88790615|gb|EAR21730.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Nitrococcus mobilis Nb-231] Length = 113 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I + A+AL Y T + AP + A+G +A+++ ++A H+IP++ L + L Q Sbjct: 12 MIEHDRRLAVALEY--TGHGAPRVTAQGHGALAEEIIRLAQAHDIPLYPNRDLVQVL-AQ 68 Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350 + ++ IP + Y AVA+LI Y Sbjct: 69 IELDQEIPELLYHAVAELIAFAY 91 >gi|330808246|ref|YP_004352708.1| FlhB domain-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376354|gb|AEA67704.1| Conserved hypothetical protein, FlhB domain-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 109 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP L AKG +A+++ +IA E +PI+E L + L ++ + +IP Sbjct: 10 AIALKY--DGHHAPTLTAKGDEALAEEILRIARESEVPIYENAELVK-LLARMELGDSIP 66 Query: 336 PVFYKAVAQLI 346 Y+ +A++I Sbjct: 67 EELYRTIAEII 77 >gi|224826964|ref|ZP_03700062.1| putative flagellar biosynthesis-related protein [Lutiella nitroferrum 2002] gi|224600797|gb|EEG06982.1| putative flagellar biosynthesis-related protein [Lutiella nitroferrum 2002] Length = 110 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q AP +VAKG +A+++ + A E + + + P+L SL QV ++ IP Sbjct: 13 AIALSY-QDGARAPKVVAKGYGELAERIIERAQEAGVFVHDSPALV-SLLMQVDLDQQIP 70 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ +Y Sbjct: 71 PELYRAVAEVLAFVY 85 >gi|300311379|ref|YP_003775471.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1] gi|300074164|gb|ADJ63563.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1] Length = 114 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y AP +VAKG+ L+A+ + A E + + E L SL QV ++ Sbjct: 7 PLQNAVALAY-NASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELV-SLLMQVELD 64 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IPP Y+ VA+L+ +Y Sbjct: 65 QQIPPALYRTVAELLAWLY 83 >gi|325271963|ref|ZP_08138414.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51] gi|324102911|gb|EGC00307.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51] Length = 117 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + IA+ + +A EH +PI+E L R L ++ + IP Sbjct: 9 AIALSY--DGQQAPSLTAKGDDSIAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65 Query: 336 PVFYKAVAQLI 346 Y +A++I Sbjct: 66 EALYLTIAEII 76 >gi|91977593|ref|YP_570252.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB5] gi|91684049|gb|ABE40351.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB5] Length = 88 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG+ I K+ ++A +H+IPI E LA +L V + IP Sbjct: 10 AVALHYDRA--GAPRVVAKGKGTIGAKIIEVAKQHDIPIEENEVLAGAL-SHVELGEEIP 66 Query: 336 PVFYKAVAQLI 346 YKAVA+++ Sbjct: 67 EELYKAVAEVL 77 >gi|289805082|ref|ZP_06535711.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 224 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 23/235 (9%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ KK+ D EG S E + ++A +Y FF T + ++L Sbjct: 2 SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILI 53 Query: 68 SATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFG-----IGSYLIQRIPVLNLN 121 + L+ ++ + LT LS A + LLF+ G +GS +Q V+ Sbjct: 54 ESITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASK 112 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + + ++ K+I+S++++V KS +K+I++ I Y+ F A P Sbjct: 113 AIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALP 168 Query: 182 HSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + L V ++ + ++ F + +LD + Y++ LKMSK ++K E Sbjct: 169 YCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQE 223 >gi|299135221|ref|ZP_07028412.1| type III secretion exporter [Afipia sp. 1NLS2] gi|298590198|gb|EFI50402.1| type III secretion exporter [Afipia sp. 1NLS2] Length = 91 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP +VAKG+ IAKK+ ++A EH++ I E LA +L V I IP Sbjct: 13 AVALHY--DRKGAPRVVAKGKGEIAKKIIEVASEHDVAIQENEVLAGAL-SNVEIGDEIP 69 Query: 336 PVFYKAVAQLI 346 Y+AVA+++ Sbjct: 70 AELYRAVAEVL 80 >gi|222055862|ref|YP_002538224.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32] gi|221565151|gb|ACM21123.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32] Length = 106 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A+AL Y + AP +VAKG + A+ + +A E+ + + E P L L K V Sbjct: 6 NDLKKAVALAYNPAGDYAPRVVAKGCGVTAEAIIALARENGVYVHESPDLVNLLLK-VDQ 64 Query: 331 NSAIPPVFYKAVAQLIYKIYH 351 + IPP Y+AVA+L+ +Y Sbjct: 65 DRYIPPELYRAVAELLAWLYQ 85 >gi|320536637|ref|ZP_08036655.1| FlhB domain protein [Treponema phagedenis F0421] gi|320146513|gb|EFW38111.1| FlhB domain protein [Treponema phagedenis F0421] Length = 104 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + AP++VAKG+ IA+K+ +IA +H++PI ++ LA L +Q I + IP Y+AVA + Sbjct: 18 SSAPIIVAKGKGQIAEKILEIADKHSVPIIQDTILAEILSEQ-QIGACIPDETYQAVAAI 76 >gi|302188650|ref|ZP_07265323.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae 642] Length = 107 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Query: 269 ITNPTH---YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +T P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L Sbjct: 1 MTLPDHTPRQAIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|222100070|ref|YP_002534638.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM 4359] gi|221572460|gb|ACM23272.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM 4359] Length = 80 Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T+ A+ALRY + +AP +VAKG +A+K+ +IA + IPI E P L L + + Sbjct: 3 TDDIRKAVALRYDPSSMNAPEVVAKGAGEVAEKIIEIAKRYGIPIEERPDLVDDLLR-LE 61 Query: 330 INSAIPPVFYKAVAQ 344 + S IP Y +A+ Sbjct: 62 LFSEIPEEMYLVIAE 76 >gi|192291990|ref|YP_001992595.1| type III secretion protein [Rhodopseudomonas palustris TIE-1] gi|316933568|ref|YP_004108550.1| type III secretion exporter [Rhodopseudomonas palustris DX-1] gi|192285739|gb|ACF02120.1| type III secretion protein [Rhodopseudomonas palustris TIE-1] gi|315601282|gb|ADU43817.1| type III secretion exporter [Rhodopseudomonas palustris DX-1] Length = 91 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 5/76 (6%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NP AL Y AP +VAKG+ ++ K+ ++A +H+IPI E LA +L V + Sbjct: 8 NPLAIALHYDYA----GAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SHVEL 62 Query: 331 NSAIPPVFYKAVAQLI 346 IP YKAVA+++ Sbjct: 63 GDEIPEELYKAVAEVL 78 >gi|152985566|ref|YP_001349208.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas aeruginosa PA7] gi|150960724|gb|ABR82749.1| flagellar biosynthetic FlhB domain protein [Pseudomonas aeruginosa PA7] Length = 111 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|146282896|ref|YP_001173049.1| FlhB domain-containing protein [Pseudomonas stutzeri A1501] gi|145571101|gb|ABP80207.1| FlhB domain protein [Pseudomonas stutzeri A1501] gi|327481236|gb|AEA84546.1| FlhB domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 110 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +AP L AKG + +A+ + IA EH +PI+E L + L ++ + IP Sbjct: 9 AIALSYDGV--NAPSLSAKGDDELAEAILAIAREHEVPIYENADLVK-LLARLELGDEIP 65 Query: 336 PVFYKAVAQLI 346 Y+ +A++I Sbjct: 66 EALYRTIAEII 76 >gi|71388156|gb|AAZ31290.1| EpaS1 [Escherichia coli] Length = 155 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157 ++ G+KRI+ + + F+K+ + IIL Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143 >gi|209522461|ref|ZP_03271060.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] gi|209497100|gb|EDZ97356.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] Length = 114 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG LIA+ + + A E + + E P + SL QV +++ IPP Y+AVA+L+ Sbjct: 22 APRVVAKGYGLIAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARIPPQLYQAVAELL 79 >gi|138896706|ref|YP_001127159.1| flagellar biosynthesis, FlhS-like protein [Geobacillus thermodenitrificans NG80-2] gi|134268219|gb|ABO68414.1| Flagellar biosynthesis, FlhS-related protein [Geobacillus thermodenitrificans NG80-2] Length = 98 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY + AP +VA+G +A+K+ ++A +H++ I E+P L + L Q+ Sbjct: 14 MNGPT--AAVIRYNEASGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDCIPPQLYAVIA 85 >gi|209963527|ref|YP_002296442.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum centenum SW] gi|209956993|gb|ACI97629.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum centenum SW] Length = 109 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y Q + P +VA G+ +A+++ +A+ H +P+ E+ LAR L P + IP Sbjct: 13 AAALTYEQGSDALPRVVASGRGAVAERIVDLAFLHGVPVREDADLARVLAAIDP-GTEIP 71 Query: 336 PVFYKAVAQLIYKIY 350 P AVA+++ +Y Sbjct: 72 PDAIMAVAEVLAHLY 86 >gi|85715097|ref|ZP_01046081.1| type III secretion protein [Nitrobacter sp. Nb-311A] gi|85698012|gb|EAQ35885.1| type III secretion protein [Nitrobacter sp. Nb-311A] Length = 89 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG + K+ ++A EH+IPI E LA +L V + IP Sbjct: 10 AVALHY-DKGSGAPRVVAKGSGSLGAKIIEVAKEHDIPIEENEVLAGAL-SHVELGDEIP 67 Query: 336 PVFYKAVAQLI 346 YKAVA+++ Sbjct: 68 AELYKAVAEVL 78 >gi|291280386|ref|YP_003497221.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans SSM1] gi|290755088|dbj|BAI81465.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans SSM1] Length = 90 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y ++ AP LVAKGQ LIA+K+ + A EH + I E+P + + + + IP Y+ Sbjct: 12 YDANKDKAPKLVAKGQGLIAEKIIEKAKEHGVFIKEDPDIVE-ILSTLDLFEEIPDKLYQ 70 Query: 341 AVAQLIYKIY 350 A+A ++ ++Y Sbjct: 71 AIANILVEVY 80 >gi|71733987|ref|YP_275475.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289626814|ref|ZP_06459768.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646515|ref|ZP_06477858.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487768|ref|ZP_07005809.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554540|gb|AAZ33751.1| flagellar biosynthetic FlhB domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157860|gb|EFH98939.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323986|gb|EFW80070.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328122|gb|EFW84127.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330869033|gb|EGH03742.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876079|gb|EGH10228.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330883294|gb|EGH17443.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 107 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALSY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|312878031|ref|ZP_07737969.1| flagellar protein FhlB-like protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795183|gb|EFR11574.1| flagellar protein FhlB-like protein [Caldicellulosiruptor lactoaceticus 6A] Length = 94 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + E+ AP +VAKG+ +A+K+ + A + +IP++E+ S+A LF + + IP Y+ V Sbjct: 15 ELEDIAPKIVAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVV 73 Query: 343 AQ-LIYKIYHKKI 354 AQ L++ Y KI Sbjct: 74 AQILVFIGYLDKI 86 >gi|39995477|ref|NP_951428.1| FlhB domain-containing protein [Geobacter sulfurreducens PCA] gi|39982240|gb|AAR33701.1| FlhB domain protein, putative [Geobacter sulfurreducens PCA] gi|298504477|gb|ADI83200.1| FlhB cytoplasmic domain-related protein [Geobacter sulfurreducens KN400] Length = 90 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VAKG + A+ + A E + + + P L R L QV I+S IP Sbjct: 10 AVALSY-REGHYAPQVVAKGYGVTAEAIIACAREAGVYVHQSPELVRQLI-QVDIDSCIP 67 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+L+ +Y Sbjct: 68 ADLYRAVAELLAWLY 82 >gi|114330763|ref|YP_746985.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas eutropha C91] gi|114307777|gb|ABI59020.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas eutropha C91] Length = 113 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKGQ LIA+++ + A E + + E L +L QV ++ IP Sbjct: 30 AVALTY-HSGMTAPQVVAKGQGLIAEEIIRRAQEAGVYVHESAELV-ALLMQVDLDEHIP 87 Query: 336 PVFYKAVAQLIYKIYH 351 P Y A+A+L+ +Y Sbjct: 88 PELYVAIAELLAWLYQ 103 >gi|237799335|ref|ZP_04587796.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022191|gb|EGI02248.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 107 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALTY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|75675592|ref|YP_318013.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi Nb-255] gi|74420462|gb|ABA04661.1| type III secretion protein, related to flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi Nb-255] Length = 89 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG+ + K+ ++A EH+IPI + LA +L V + IP Sbjct: 10 AVALHY-DKGSGAPRVVAKGRGSLGAKIIEVANEHDIPIEQNEVLADAL-SHVELGDEIP 67 Query: 336 PVFYKAVAQLI 346 YKAVA+++ Sbjct: 68 AELYKAVAEVL 78 >gi|239628974|ref|ZP_04672005.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519120|gb|EEQ58986.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 127 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ +PV++A G +A+ + IA + IP+F++ S A SL + + IP Sbjct: 9 AVALKYNADEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGCNIP 67 Query: 336 PVFYKAVAQLIYKI 349 Y+ VA + K+ Sbjct: 68 VELYEVVAGIYCKL 81 >gi|144900470|emb|CAM77334.1| Type III secretion exporter [Magnetospirillum gryphiswaldense MSR-1] Length = 122 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + DAP + A G+ +A+++ ++A+ + + + +P LA+ + V +++ IP Sbjct: 31 AVALQYDPDQADAPTVTASGKGAVAEQILQLAFANGVKVRTDPDLAQ-VLAAVEVDTVIP 89 Query: 336 PVFYKAVAQLIYKIYH 351 + AVA+++ +Y Sbjct: 90 LEAFAAVAEILAYVYR 105 >gi|323183412|gb|EFZ68809.1| surface presentation of antigens protein spaS [Escherichia coli 1357] Length = 190 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157 ++ G+KRI+ + + F+K+ + IIL Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143 >gi|146297151|ref|YP_001180922.1| flagellar protein FhlB-like protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410727|gb|ABP67731.1| cytoplasmic domain of flagellar protein FhlB-like protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 94 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP ++AKGQ L+A+++ + A E NIPI+ + +A LF + + IP Sbjct: 9 AVAIKY-DIKEIAPKVIAKGQGLVAERILEKAKEKNIPIYHDQYIAERLF-NLELQQYIP 66 Query: 336 PVFYKAVAQLI 346 Y+ VAQ++ Sbjct: 67 EDLYEVVAQIL 77 >gi|330976060|gb|EGH76126.1| FlhB domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 107 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ALAL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 ALALSY--DGQHAPTLSAKGDDQLAEAILAIAPEYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|330888994|gb|EGH21655.1| FlhB domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 107 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALSY--GGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|148546777|ref|YP_001266879.1| flagellar protein FhlB-like protein [Pseudomonas putida F1] gi|148510835|gb|ABQ77695.1| cytoplasmic domain of flagellar protein FhlB-like protein [Pseudomonas putida F1] Length = 112 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ Sbjct: 4 TTPRQ-AIALNY--DGHQAPTLTAKGDEDLAEAILALAREHEVPIYENADLVR-LLARLE 59 Query: 330 INSAIPPVFYKAVAQLI 346 + IP Y +A++I Sbjct: 60 LGDQIPEALYLTIAEII 76 >gi|315256731|gb|EFU36699.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 85-1] Length = 192 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157 ++ G+KRI+ + + F+K+ + IIL Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143 >gi|300906602|ref|ZP_07124293.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 84-1] gi|300401641|gb|EFJ85179.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 84-1] Length = 192 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157 ++ G+KRI+ + + F+K+ + IIL Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143 >gi|158321501|ref|YP_001514008.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs] gi|158141700|gb|ABW20012.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs] Length = 98 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + APV+ A G ++A K+ + E+ + I+E+ L + L Q + + IP Sbjct: 10 AVAIKYDVENDRAPVITASGMGVVADKIIEKGMENEVAIYEDERLVKELI-QFKVGTEIP 68 Query: 336 PVFYKAVAQLI 346 P Y+ VAQ++ Sbjct: 69 PELYEIVAQVL 79 >gi|257484836|ref|ZP_05638877.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986556|gb|EGH84659.1| FlhB domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011126|gb|EGH91182.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 107 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALSY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|104782789|ref|YP_609287.1| hypothetical protein PSEEN3784 [Pseudomonas entomophila L48] gi|95111776|emb|CAK16500.1| conserved hypothetical protein; FlhB domain protein [Pseudomonas entomophila L48] Length = 114 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA EH +PI+E L R L ++ + IP Sbjct: 9 AIALSY--DGQQAPTLSAKGDDELAEAILAIAREHEVPIYENAELVR-LLARLELGEQIP 65 Query: 336 PVFYKAVAQLI 346 Y +A++I Sbjct: 66 EALYLTIAEII 76 >gi|187919907|ref|YP_001888938.1| putative type III secretion transmembrane protein, EscU/SctU/YscU-like protein [Burkholderia phytofirmans PsJN] gi|187718345|gb|ACD19568.1| putative type III secretion transmembrane protein, EscU/SctU/YscU-like protein [Burkholderia phytofirmans PsJN] Length = 246 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 61/276 (22%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTEAP+ ++ A +G+ S S+ S L L++LL +P +Y V +HV+ Sbjct: 3 DKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFLLMD-APHVYQVC--VHVV-EV 58 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------QRIPVLNLNH 122 ATQ + +L + A+ +P +L G+G+ + Q V + Sbjct: 59 ATQIDQGQPFAVRYLQITRAFGAA---MP--ILLATLGVGALAVVVPEVAQAGGVFAVKR 113 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 P FKR++ G+K ++ + L++ I+L+ F +L F+ Sbjct: 114 ALPDFKRLNPVTGLKNLFGLKTLID-----TGIVLM-----------QFCILVFV----- 152 Query: 183 SILYHAFFTVRKVLI--MILLFIATLTV---------------------LDIGWSYHQWY 219 L+HAF T L+ L F L+V +D QW Sbjct: 153 --LWHAFATWCAQLLPAFALAFGGQLSVTAQSLAQLQGLMAASQLAPAAIDFWLQRLQWR 210 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255 +L+M K EIK E + G+P +K R++++ R R Sbjct: 211 RRLRMDKNEIKREHRDEDGDPHVKGRRRALHRELSR 246 >gi|34499326|ref|NP_903541.1| flagellar biosynthesis-like protein [Chromobacterium violaceum ATCC 12472] gi|34105177|gb|AAQ61533.1| probable flagellar biosynthesis-related protein [Chromobacterium violaceum ATCC 12472] Length = 112 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + +P +VAKG +A+++ A + + + + P L SL QV ++ IP Sbjct: 13 AVALSYKEGQR-SPRVVAKGYGQMAQRIIDCAQDAGVFVHDSPELV-SLLMQVDLDKHIP 70 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+AVA+++ IY+ Sbjct: 71 PELYRAVAEILAFIYY 86 >gi|66046624|ref|YP_236465.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63257331|gb|AAY38427.1| FlhB domain protein [Pseudomonas syringae pv. syringae B728a] gi|330953816|gb|EGH54076.1| FlhB domain-containing protein [Pseudomonas syringae Cit 7] gi|330972504|gb|EGH72570.1| FlhB domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 107 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|222823585|ref|YP_002575159.1| flagellar biosynthesis protein [Campylobacter lari RM2100] gi|222538807|gb|ACM63908.1| conserved hypothetical protein, possible flagellar biosynthesis protein [Campylobacter lari RM2100] Length = 96 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y + + +AP ++A + A K+ +A E+ IPI E+ L L K + + Sbjct: 5 TKKAVALGYNKEDQNAPKILANAKGENAAKIISLAKENGIPIKEDKDLVEVLSK-LDLGD 63 Query: 333 AIPPVFYKAVAQL---IYKIYHK 352 IPP YKAVA++ +YK+ ++ Sbjct: 64 EIPPNMYKAVAEIFAFLYKVANE 86 >gi|90415325|ref|ZP_01223259.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium HTCC2207] gi|90332648|gb|EAS47818.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium HTCC2207] Length = 98 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P+ A+AL Y APV+ AKGQ +A+ + + A + I I E+P L +L Q+ +N Sbjct: 5 PSRRAVALEY--GNRAAPVMTAKGQGEVAELIIEEAKKQGIQIAEDPQLV-ALLGQLELN 61 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y AV+ ++ +Y Sbjct: 62 EEIPESLYVAVSVILSWVY 80 >gi|89894622|ref|YP_518109.1| hypothetical protein DSY1876 [Desulfitobacterium hafniense Y51] gi|219669058|ref|YP_002459493.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2] gi|89334070|dbj|BAE83665.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539318|gb|ACL21057.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2] Length = 88 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y Q+ AP +VAKG +A+K+ + A E+ IPI ++ L +L + V IP Sbjct: 5 AAALAYDQS--GAPKVVAKGTGEVARKIIEQAIEYGIPIQKDEVLVETLMR-VEYGEEIP 61 Query: 336 PVFYKAVAQLIYKIY 350 P Y+ VA+L+ +Y Sbjct: 62 PQLYQVVAELLAFVY 76 >gi|126438997|ref|YP_001057280.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 668] gi|126218490|gb|ABN81996.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 668] Length = 105 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 272 PTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A L Y D AP +VAKG L+A+++ + A + + + P + SL QV + Sbjct: 5 PRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDL 63 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 ++ IPP Y+AVA+L+ +Y Sbjct: 64 DARIPPQLYQAVAELLAWLY 83 >gi|53717877|ref|YP_106863.1| putative export system protein [Burkholderia pseudomallei K96243] gi|76809013|ref|YP_331835.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia pseudomallei 1710b] gi|126452833|ref|YP_001064522.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 1106a] gi|134283659|ref|ZP_01770358.1| flagellar biosynthesis protein-like protein [Burkholderia pseudomallei 305] gi|167717608|ref|ZP_02400844.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei DM98] gi|167736651|ref|ZP_02409425.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 14] gi|167813749|ref|ZP_02445429.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 91] gi|167822265|ref|ZP_02453736.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 9] gi|167843859|ref|ZP_02469367.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei B7210] gi|167892359|ref|ZP_02479761.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 7894] gi|167900856|ref|ZP_02488061.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei NCTC 13177] gi|167909073|ref|ZP_02496164.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 112] gi|167917114|ref|ZP_02504205.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei BCC215] gi|217425046|ref|ZP_03456542.1| FlhB domain protein [Burkholderia pseudomallei 576] gi|226199749|ref|ZP_03795300.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei Pakistan 9] gi|237810417|ref|YP_002894868.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia pseudomallei MSHR346] gi|242314705|ref|ZP_04813721.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1106b] gi|254182179|ref|ZP_04888776.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 1655] gi|254188109|ref|ZP_04894621.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei Pasteur 52237] gi|254196973|ref|ZP_04903397.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei S13] gi|254259290|ref|ZP_04950344.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1710a] gi|254295778|ref|ZP_04963235.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 406e] gi|52208291|emb|CAH34223.1| putative export system protein [Burkholderia pseudomallei K96243] gi|76578466|gb|ABA47941.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia pseudomallei 1710b] gi|126226475|gb|ABN90015.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1106a] gi|134245068|gb|EBA45163.1| flagellar biosynthesis protein-like protein [Burkholderia pseudomallei 305] gi|157805669|gb|EDO82839.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 406e] gi|157935789|gb|EDO91459.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei Pasteur 52237] gi|169653716|gb|EDS86409.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei S13] gi|184212717|gb|EDU09760.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 1655] gi|217392066|gb|EEC32092.1| FlhB domain protein [Burkholderia pseudomallei 576] gi|225928100|gb|EEH24136.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei Pakistan 9] gi|237505628|gb|ACQ97946.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia pseudomallei MSHR346] gi|242137944|gb|EES24346.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1106b] gi|254217979|gb|EET07363.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1710a] Length = 105 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 272 PTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A L Y D AP +VAKG L+A+++ + A + + + P + SL QV + Sbjct: 5 PRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDL 63 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 ++ IPP Y+AVA+L+ +Y Sbjct: 64 DARIPPQLYQAVAELLAWLY 83 >gi|328947869|ref|YP_004365206.1| type III secretion exporter [Treponema succinifaciens DSM 2489] gi|328448193|gb|AEB13909.1| type III secretion exporter [Treponema succinifaciens DSM 2489] Length = 87 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 +A++L+Y + DAP + AK ++AKKM +IA E+NIP+ E +A ++ I I Sbjct: 8 FAVSLKYPENA-DAPFISAKESGILAKKMVEIAQENNIPVVEN-DIAANILSMRQIGECI 65 Query: 335 PPVFYKAVAQL 345 P ++A+A++ Sbjct: 66 PESTWEAIAEI 76 >gi|269792960|ref|YP_003317864.1| FhlB domain-containing flagellar protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100595|gb|ACZ19582.1| flagellar protein with uncharacterized cytoplasmic FhlB domain-like protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 98 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + + APV++A G+ +A+++ ++A E ++PI E+ +L +L + + IP Sbjct: 15 AAALRYDEERDRAPVVMASGRGHVAERILEVAREASVPIVEDAALVGAL-LALEVGEEIP 73 Query: 336 PVFYKAVAQLI 346 P Y AVA+++ Sbjct: 74 PELYGAVAKVL 84 >gi|312793166|ref|YP_004026089.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180306|gb|ADQ40476.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii 177R1B] Length = 94 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + E+ AP ++AKG+ +A+K+ + A + +IP++E+ S+A LF + + IP Y+ V Sbjct: 15 ELEDIAPKIIAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVV 73 Query: 343 AQ-LIYKIYHKKI 354 AQ L++ Y KI Sbjct: 74 AQILVFIGYLDKI 86 >gi|289678892|ref|ZP_06499782.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 107 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|238028882|ref|YP_002913113.1| putative flagellar protein FhlB [Burkholderia glumae BGR1] gi|237878076|gb|ACR30409.1| Putative flagellar protein FhlB [Burkholderia glumae BGR1] Length = 129 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG L+A+ + A E + + P + SL QV ++ I Sbjct: 10 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARESGLYVHTAPEMV-SLLMQVDLDDRI 68 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA+L+ +Y Sbjct: 69 PPALYRAVAELLAWLY 84 >gi|189426369|ref|YP_001953546.1| FlhB domain protein [Geobacter lovleyi SZ] gi|189422628|gb|ACD97026.1| FlhB domain protein [Geobacter lovleyi SZ] Length = 91 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y Q APV+VAKG+ ++A+ + A E + + E P L +L QV ++ IP Sbjct: 13 AAALSYKQGFY-APVVVAKGKGIMAEAIIACAKEAGVYVHESPELV-TLLMQVDLDEHIP 70 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ IY Sbjct: 71 AELYRAVAEILVWIY 85 >gi|330899495|gb|EGH30914.1| FlhB domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 107 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|251772415|gb|EES52982.1| probable flagellar biosynthesis protein [Leptospirillum ferrodiazotrophum] Length = 90 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++ALRY+ ++AP+++ GQ IA+ + +A IP+ + P L++ L + VP +P Sbjct: 4 SVALRYLPGVDEAPLVLVSGQGEIARGIVLLAQSLKIPVVKAPDLSQQLLR-VPPGHPVP 62 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA ++ ++ Sbjct: 63 EELYEAVAVILAALF 77 >gi|172057901|ref|YP_001814361.1| hypothetical protein Exig_1892 [Exiguobacterium sibiricum 255-15] gi|171990422|gb|ACB61344.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15] Length = 86 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VAKG +A+++ + A +HNIPI E+ +L +L V ++ IP Sbjct: 4 AIALSY-EEQMQAPKVVAKGSERVAERILEEALQHNIPIREDATLI-TLLNTVQVSEQIP 61 Query: 336 PVFYKAVAQLIYKIYH 351 Y +A+L +Y Sbjct: 62 NELYGVIAELFAFLYQ 77 >gi|170722818|ref|YP_001750506.1| hypothetical protein PputW619_3655 [Pseudomonas putida W619] gi|169760821|gb|ACA74137.1| conserved hypothetical protein [Pseudomonas putida W619] Length = 114 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + +A EH +PI+E L R L ++ + IP Sbjct: 9 AIALSY--DGQQAPTLSAKGDDELAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65 Query: 336 PVFYKAVAQLI 346 Y +A++I Sbjct: 66 EALYLTIAEII 76 >gi|52080210|ref|YP_079001.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580] gi|52785587|ref|YP_091416.1| YlqH [Bacillus licheniformis ATCC 14580] gi|319646011|ref|ZP_08000241.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2] gi|52003421|gb|AAU23363.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580] gi|52348089|gb|AAU40723.1| YlqH [Bacillus licheniformis ATCC 14580] gi|317391761|gb|EFV72558.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2] Length = 93 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y + ++ AP +VAKG A+K+ + A + +PI E+ +L L + + ++ Sbjct: 6 PLRRAVALHYDEMKDKAPKVVAKGSGYTAEKIIEEAQKAGVPIQEDATLVE-LMRHLELD 64 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y+ VA++ +Y Sbjct: 65 DHIPEALYEIVAEIFSFVY 83 >gi|94314177|ref|YP_587386.1| putative flagellar protein [Cupriavidus metallidurans CH34] gi|93358029|gb|ABF12117.1| putative flagellar protein [Cupriavidus metallidurans CH34] Length = 91 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + E AP +VAKG + A+ + A E + + P+L +L QV ++S IP Sbjct: 9 AVALSYEEGEK-APRVVAKGYGVTAESIIARAQEAGVYVHNSPALV-NLLMQVDMDSQIP 66 Query: 336 PVFYKAVAQLI 346 P Y AVAQL+ Sbjct: 67 PQLYLAVAQLL 77 >gi|225849513|ref|YP_002729678.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] gi|225644207|gb|ACN99257.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] Length = 87 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + ++ AP +VAKG+ IA+K+ ++A ++ + I E+ L L + + IP Sbjct: 8 AVALKYERYKDTAPKVVAKGKGEIAQKIIEVARQYGVYIKEDKDLVEVL-SGLDLYQEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 YK VA+L+ IY K Sbjct: 67 EDLYKVVAELLAFIYKTK 84 >gi|50954412|ref|YP_061700.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950894|gb|AAT88595.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str. CTCB07] Length = 295 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 ++ AP +VAKG + +A ++R+ A +P+ ++ LAR+L + VP+ IP + Sbjct: 204 VEAGKSAPRVVAKGADFVATRIREEARSAGVPMVQDLPLARALHRDVPLGQPIPNEHFGQ 263 Query: 342 VAQLI 346 VA ++ Sbjct: 264 VAHVL 268 >gi|33596160|ref|NP_883803.1| putative flagellar protein [Bordetella parapertussis 12822] gi|33601568|ref|NP_889128.1| putative flagellar protein [Bordetella bronchiseptica RB50] gi|33573163|emb|CAE36815.1| conserved hypothetical protein [Bordetella parapertussis] gi|33576004|emb|CAE33084.1| putative flagellar protein [Bordetella bronchiseptica RB50] Length = 104 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP +VAKG +A + + A EH + + E L L QV +++ IP Sbjct: 17 AVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIP 74 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 75 PQLYTAVAELLAWLY 89 >gi|257457069|ref|ZP_05622247.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] gi|257445543|gb|EEV20608.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] Length = 88 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL Y E+ P++ A G +IA+K+R+IA + +IP+ + P LA L + I S IP Sbjct: 8 SVALSYTFGES-VPLIAASGHGVIAQKIREIADKCHIPLIKNPLLAEVLV-EAEIGSCIP 65 Query: 336 PVFYKAVAQL 345 Y+AVA L Sbjct: 66 EETYQAVAAL 75 >gi|322379284|ref|ZP_08053670.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1] gi|322379844|ref|ZP_08054132.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5] gi|321147722|gb|EFX42334.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5] gi|321148321|gb|EFX42835.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1] Length = 86 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ AP +VA G IA+ + + A +IP+F SL SL +P++ AIP Sbjct: 4 AVALAYNIEQDHAPKVVASGVGSIAEAIMQKAKAFDIPLFCNESLVESLL-HLPVDHAIP 62 Query: 336 PVFYKAVAQL 345 P Y++V ++ Sbjct: 63 PELYQSVVEV 72 >gi|33592505|ref|NP_880149.1| putative flagellar protein [Bordetella pertussis Tohama I] gi|33572151|emb|CAE41695.1| putative flagellar protein [Bordetella pertussis Tohama I] gi|332381923|gb|AEE66770.1| putative flagellar protein [Bordetella pertussis CS] Length = 108 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP +VAKG +A + + A EH + + E L L QV +++ IP Sbjct: 21 AVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIP 78 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 79 PQLYTAVAELLAWLY 93 >gi|296126255|ref|YP_003633507.1| type III secretion exporter [Brachyspira murdochii DSM 12563] gi|296018071|gb|ADG71308.1| type III secretion exporter [Brachyspira murdochii DSM 12563] Length = 87 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A A+ Y + ++APV++AKG++ +AK+M + A+++ +P+ + A L Q+ I IP Sbjct: 9 AAAILYNRDIHNAPVVIAKGRHYLAKRMAETAHKNKVPVVSDEKTAHHLM-QLEIGEEIP 67 Query: 336 PVFYKAVAQLIYKIY 350 Y+AV+ ++ IY Sbjct: 68 YSLYEAVSIILKYIY 82 >gi|15644420|ref|NP_229472.1| flagellar biosynthesis-related protein [Thermotoga maritima MSB8] gi|4982247|gb|AAD36739.1|AE001808_14 flagellar biosynthesis-related protein [Thermotoga maritima MSB8] Length = 86 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T+ A+AL+Y T AP +VAKG +A+++ ++A H IPI E P + L + + Sbjct: 3 TDEIKKAVALKYDPTRTSAPEVVAKGVGEVAERIIEMARRHGIPIEERPDIIDDLLR-LD 61 Query: 330 INSAIPPVFYKAVAQL 345 + S IP Y +A++ Sbjct: 62 LFSEIPEEMYLVIAEI 77 >gi|157363588|ref|YP_001470355.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] gi|157314192|gb|ABV33291.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] Length = 83 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y DAP ++AKG+ IA+++ K A E +P+ P L R L++ + + IP Sbjct: 8 AVALGYDPDVFDAPFVIAKGKEEIAERIIKQALEAKVPVVSSPELVRKLYR-LEVLEEIP 66 Query: 336 PVFYKAVAQLI 346 Y AVA+++ Sbjct: 67 DDLYFAVAEIL 77 >gi|154686024|ref|YP_001421185.1| YlqH [Bacillus amyloliquefaciens FZB42] gi|154351875|gb|ABS73954.1| YlqH [Bacillus amyloliquefaciens FZB42] Length = 93 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y + ++ AP +VA G+ +A+ + K A + +PI E+ +L L + + ++ Sbjct: 6 PLRRAVALHYDRQKDQAPKVVATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTVD 64 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y+ VA++ +Y Sbjct: 65 DQIPEALYETVAEIFSFVY 83 >gi|288573050|ref|ZP_06391407.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568791|gb|EFC90348.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002] Length = 91 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + E +AP LVA G IA+++ ++A E +PI E+ +L +L + I IP Sbjct: 11 AAALKYDREEREAPHLVASGSGRIAERIVEVAREAEVPIVEDAALVSAL-LALDIGEEIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ IY Sbjct: 70 LDLYEAVARVLAFIY 84 >gi|323180302|gb|EFZ65854.1| surface presentation of antigens protein spaS [Escherichia coli 1180] Length = 210 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 12/164 (7%) Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 IP LL+ M I Q L VK F ++ G+KRI+ + + F+K+ + I Sbjct: 49 IPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYI 108 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF----IATLTVLDI 211 + I + + + + + + S+L ++L +++L+ + + + D Sbjct: 109 VFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW----GEMLFLLILYCLGSMIIVLIFDF 164 Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255 Y + +KM KQE+K E K+ GNP IK+++ R RIR Sbjct: 165 IAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR----RERIR 204 >gi|126664979|ref|ZP_01735962.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter sp. ELB17] gi|126630349|gb|EBA00964.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter sp. ELB17] Length = 96 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y AP + A G + +A ++ +IA EH +P++E LA +L ++ +N IP Sbjct: 13 AVALKY--DGERAPTISAVGNHELADEIIRIAREHGVPLYENAELASTL-ARLSLNDEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ +H Sbjct: 70 EQLYQLVAEILAFAFH 85 >gi|330940611|gb|EGH43653.1| FlhB domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 107 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA E+ +PI+E L + L ++ + +IP Sbjct: 11 AIALSY--DGQHAPTLSAKGDEQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|312127964|ref|YP_003992838.1| type iii secretion exporter [Caldicellulosiruptor hydrothermalis 108] gi|311777983|gb|ADQ07469.1| type III secretion exporter [Caldicellulosiruptor hydrothermalis 108] Length = 92 Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E+ AP +VAKG+ +A+K+ + A + +IP++E+ ++A LF + + IP Y+ VAQ Sbjct: 17 EDIAPKVVAKGKGYVAEKIVEKAKQEDIPVYEDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75 Query: 345 -LIYKIYHKKI 354 L++ Y KI Sbjct: 76 ILVFIGYLDKI 86 >gi|307546936|ref|YP_003899415.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581] gi|307218960|emb|CBV44230.1| K04061 flagellar biosynthesis protein [Halomonas elongata DSM 2581] Length = 90 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y E AP +VA+G +A+++ + A +H I + + P L L Q+ ++ AIP Sbjct: 10 AVGLAYGDDET-APKVVARGYGELAERIVEQAKQHGIHVHDAPELV-GLLMQLDLDEAIP 67 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+ VA+L+ ++ + Sbjct: 68 PELYRIVAELLVWLHER 84 >gi|237749753|ref|ZP_04580233.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374618|gb|EEO25009.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 91 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y + ++ AP +VA GQ IA+ + A E+ +P+F L SL K + +NS +P Sbjct: 5 AAALAYEEYKDHAPRIVASGQGKIAEAIIAKAQEYQVPLFCNAELVDSLIK-MEVNSNVP 63 Query: 336 PVFYKAVAQL 345 Y+AV + Sbjct: 64 EALYQAVVDV 73 >gi|160880531|ref|YP_001559499.1| flagellar protein FhlB-like protein [Clostridium phytofermentans ISDg] gi|160429197|gb|ABX42760.1| cytoplasmic domain of flagellar protein FhlB-like protein [Clostridium phytofermentans ISDg] Length = 122 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y ++ AP ++A G+N++A K+ + A E +IPI ++ LA +L K + + IP Sbjct: 34 AVAISY-DPKDPAPRIIASGKNILADKIIEKALEEDIPIHKDVPLANTLSK-LELGDCIP 91 Query: 336 PVFYKAVAQLI 346 P Y V+Q++ Sbjct: 92 PELYGIVSQVL 102 >gi|53724870|ref|YP_104758.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei ATCC 23344] gi|67641500|ref|ZP_00440277.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei GB8 horse 4] gi|167001486|ref|ZP_02267281.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei PRL-20] gi|254174894|ref|ZP_04881555.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei ATCC 10399] gi|254359693|ref|ZP_04975964.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei 2002721280] gi|262193313|ref|YP_001082911.2| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei NCTC 10247] gi|52428293|gb|AAU48886.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei ATCC 23344] gi|148028907|gb|EDK86839.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei 2002721280] gi|160695939|gb|EDP85909.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei ATCC 10399] gi|238522443|gb|EEP85887.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei GB8 horse 4] gi|243062693|gb|EES44879.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei PRL-20] gi|261825984|gb|ABN01805.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei NCTC 10229] gi|261835037|gb|ABO04245.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei NCTC 10247] Length = 95 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L Sbjct: 10 DTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAEL 68 Query: 346 IYKIY 350 + +Y Sbjct: 69 LAWLY 73 >gi|226939559|ref|YP_002794632.1| flagellar biosynthesis-related protein [Laribacter hongkongensis HLHK9] gi|226714485|gb|ACO73623.1| probable flagellar biosynthesis-related protein [Laribacter hongkongensis HLHK9] Length = 114 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP + AKGQ +A ++ + A + + + E P L +L QV ++S IP Sbjct: 11 AVALAY-REGSVAPKVTAKGQGELALRIIERAQQAGVFVHESPQLV-NLLMQVDLDSQIP 68 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ +Y Sbjct: 69 PELYQAVAEVLAFVY 83 >gi|289578627|ref|YP_003477254.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus Ab9] gi|289528340|gb|ADD02692.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus Ab9] Length = 93 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ AP +VAKGQ IA K+ + A + +PI+++ + L+ + I IP Sbjct: 9 AVALKY-DVQDIAPKVVAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66 Query: 336 PVFYKAVAQ-LIYKIYHKKI 354 YK VA+ LI+ Y KI Sbjct: 67 EDLYKIVAEILIFIGYLDKI 86 >gi|303241146|ref|ZP_07327654.1| type III secretion exporter [Acetivibrio cellulolyticus CD2] gi|302591273|gb|EFL61013.1| type III secretion exporter [Acetivibrio cellulolyticus CD2] Length = 98 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL--FKQVPINSAIP 335 AL+Y N AP ++ G IA+K+ + A E++IPI++ LA +L FK I IP Sbjct: 13 ALKYSPQSNRAPEIIGLGSGEIAEKIIEKAKENDIPIYKNDELASTLSHFK---IGDEIP 69 Query: 336 PVFYKAVAQLI 346 P Y+ VA+++ Sbjct: 70 PELYEVVAEIL 80 >gi|266621940|ref|ZP_06114875.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] gi|288866374|gb|EFC98672.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] Length = 127 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ +PV++A G +A+ + IA + IP+F++ S A SL + + S IP Sbjct: 9 AVALKYNVEEDASPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLEVGSNIP 67 Query: 336 PVFYKAVAQLIYKI 349 Y+ VA + K+ Sbjct: 68 VELYEVVAAIYCKL 81 >gi|261419407|ref|YP_003253089.1| hypothetical protein GYMC61_1991 [Geobacillus sp. Y412MC61] gi|319766222|ref|YP_004131723.1| type III secretion exporter [Geobacillus sp. Y412MC52] gi|261375864|gb|ACX78607.1| conserved hypothetical protein [Geobacillus sp. Y412MC61] gi|317111088|gb|ADU93580.1| type III secretion exporter [Geobacillus sp. Y412MC52] Length = 95 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP++ AKG +A+ + A EH +PI ++P+L L +V IN IP Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAAREHGVPIRQDPTLVE-LLGKVEINETIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+L +Y Sbjct: 67 EELYALVAELFAFLYQ 82 >gi|229918614|ref|YP_002887260.1| FlhB domain protein [Exiguobacterium sp. AT1b] gi|229470043|gb|ACQ71815.1| FlhB domain protein [Exiguobacterium sp. AT1b] Length = 86 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q+ DAP +VAKG ++A++M +IA + +P+ E+P+L L + I IP Sbjct: 7 AMALSYEQSM-DAPHVVAKGTGIVAERMLEIALANGVPVHEDPALLSLL-SALNIEEQIP 64 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ +A+L +Y Sbjct: 65 EDVYQVIAELFVFLYQ 80 >gi|291613084|ref|YP_003523241.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1] gi|291583196|gb|ADE10854.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1] Length = 113 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VA G+ LIA+ + + A EH + + E L + QV ++ IP Sbjct: 13 AVALAY-RNGDAAPKVVASGRGLIAQAIIERAKEHGVYVHESEELV-GMLMQVELDQHIP 70 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 71 PQLYLAVAELLAWLY 85 >gi|120554879|ref|YP_959230.1| flagellar protein FhlB cytoplasmic domain-containing protein [Marinobacter aquaeolei VT8] gi|120324728|gb|ABM19043.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter aquaeolei VT8] Length = 106 Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y APV+ A G +A+++ +IA ++N+P++E LA + ++ +N IP Sbjct: 12 AVALKY--DGERAPVISATGTWELAEEIIRIARDNNVPLYENAELA-GILARLSLNEEIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ +A+++ +H Sbjct: 69 EELYRVIAEILAFAFH 84 >gi|300870471|ref|YP_003785342.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli 95/1000] gi|300688170|gb|ADK30841.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli 95/1000] Length = 86 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + ++AP++++KG+ L+AK+M +IA ++ +PI + + L + I IP Sbjct: 8 AVALLYEREIHNAPIVISKGEKLLAKRMIEIAKKNKVPIVSDEDTVKELM-HLEIGEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y+AV+ ++ +Y Sbjct: 67 YSVYEAVSIILKYVY 81 >gi|297584528|ref|YP_003700308.1| putative cytoplasmic domain of flagellar protein FhlB-like protein [Bacillus selenitireducens MLS10] gi|297142985|gb|ADH99742.1| putative cytoplasmic domain of flagellar protein FhlB-like protein [Bacillus selenitireducens MLS10] Length = 99 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY +T D P +VA G+ IA+++ ++A E++I + E+ L +L + Sbjct: 15 VNGPT--AAVIRYDETNGDDPKIVASGKGYIAERILELAKENHIHMEEDSLLLENLI-DM 71 Query: 329 PINSAIPPVFYKAVAQLIYKI 349 + IPP Y +A+++ I Sbjct: 72 DLGENIPPQLYAVIAEILLMI 92 >gi|15614038|ref|NP_242341.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans C-125] gi|10174092|dbj|BAB05194.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans C-125] Length = 99 Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ++Y +T DAP LVA G+ IA+++ +A +NI + E+P L +L + + IP Sbjct: 20 AAVIQYDETSGDAPKLVAHGKGQIAEQIIDMAKRNNIHMQEDPLLVENLL-DMDLGDNIP 78 Query: 336 PVFYKAVAQLIYKI 349 P Y +A+++ I Sbjct: 79 PQLYSVMAEILLLI 92 >gi|296330823|ref|ZP_06873298.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674341|ref|YP_003866013.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151828|gb|EFG92702.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412585|gb|ADM37704.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 93 Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y + ++ AP ++A G+ +A + K A + +PI E+ +L L + + ++ Sbjct: 6 PIRKAVALHYDEQKDKAPKVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTVD 64 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y+ VA++ IY Sbjct: 65 DQIPEALYETVAEIFSFIY 83 >gi|24215084|ref|NP_712565.1| FlhB-like protein [Leptospira interrogans serovar Lai str. 56601] gi|24196142|gb|AAN49583.1| FlhB-related protein [Leptospira interrogans serovar Lai str. 56601] Length = 87 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL++I +++APV+ A + +R IA ++++ + P LA SL ++PI S IP Sbjct: 3 SVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVLTVKNPILAESL-SELPIGSEIP 61 Query: 336 PVFYKAVAQL 345 Y+AV + Sbjct: 62 ENLYRAVGAI 71 >gi|57505499|ref|ZP_00371427.1| FlhB domain protein [Campylobacter upsaliensis RM3195] gi|315638835|ref|ZP_07894007.1| FlhB domain protein [Campylobacter upsaliensis JV21] gi|57016324|gb|EAL53110.1| FlhB domain protein [Campylobacter upsaliensis RM3195] gi|315481053|gb|EFU71685.1| FlhB domain protein [Campylobacter upsaliensis JV21] Length = 96 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y + + + AP ++A G+ A K+ +A EH +PI E+ L L K + + I Sbjct: 11 AVALGYQREKKESAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEI 69 Query: 335 PPVFYKAVAQLIYKIYH 351 PP YKAVA++ IY Sbjct: 70 PPNMYKAVAEVFAFIYQ 86 >gi|16078671|ref|NP_389490.1| flagellar biosynthesis protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309483|ref|ZP_03591330.1| hypothetical protein Bsubs1_08861 [Bacillus subtilis subsp. subtilis str. 168] gi|221313808|ref|ZP_03595613.1| hypothetical protein BsubsN3_08797 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318732|ref|ZP_03600026.1| hypothetical protein BsubsJ_08731 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323003|ref|ZP_03604297.1| hypothetical protein BsubsS_08837 [Bacillus subtilis subsp. subtilis str. SMY] gi|321315374|ref|YP_004207661.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5] gi|81342418|sp|O34867|YLQH_BACSU RecName: Full=Uncharacterized protein ylqH gi|2462966|emb|CAA04418.1| YlqH protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633980|emb|CAB13481.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. subtilis str. 168] gi|291484159|dbj|BAI85234.1| hypothetical protein BSNT_02627 [Bacillus subtilis subsp. natto BEST195] gi|320021648|gb|ADV96634.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5] Length = 93 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y + ++ AP ++A G+ +A + K A + +PI E+ +L L + + ++ Sbjct: 6 PIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTVD 64 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y+ VA++ IY Sbjct: 65 DQIPEALYETVAEIFSFIY 83 >gi|304311129|ref|YP_003810727.1| Probably flagellar biosynthesis-related protein [gamma proteobacterium HdN1] gi|301796862|emb|CBL45074.1| Probably flagellar biosynthesis-related protein [gamma proteobacterium HdN1] Length = 113 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + A G N +A+ + +IA EH +PI+E L ++ ++ I IP Sbjct: 13 AVALTYDGSR--APFISASGDNELAETILRIAREHGVPIYENKDLV-NILSRLEIGEEIP 69 Query: 336 PVFYKAVAQLIYKIY 350 + Y+ +A++I +Y Sbjct: 70 ELLYRTIAEIIAFVY 84 >gi|317128463|ref|YP_004094745.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] gi|315473411|gb|ADU30014.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] Length = 99 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 I PT A +RY + + P +VA+G+ +A+K+ +A E+ IP+ E+ L SL + Sbjct: 15 INGPT--AAVIRYDEASGEEPKVVAQGKGHVAQKILALAKENGIPMEEDTHLLESLL-DM 71 Query: 329 PINSAIPPVFYKAVAQLI 346 + IPP Y +A+++ Sbjct: 72 DLGENIPPQLYSVMAEIL 89 >gi|83720874|ref|YP_440763.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia thailandensis E264] gi|167617543|ref|ZP_02386174.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia thailandensis Bt4] gi|257140587|ref|ZP_05588849.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia thailandensis E264] gi|83654699|gb|ABC38762.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia thailandensis E264] Length = 108 Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L Sbjct: 20 DSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAEL 78 Query: 346 IYKIY 350 + +Y Sbjct: 79 LAWLY 83 >gi|167579446|ref|ZP_02372320.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia thailandensis TXDOH] Length = 108 Score = 44.7 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L Sbjct: 20 DSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAEL 78 Query: 346 IYKIY 350 + +Y Sbjct: 79 LAWLY 83 >gi|261855050|ref|YP_003262333.1| cytoplasmic domain of flagellar protein FhlB-like protein [Halothiobacillus neapolitanus c2] gi|261835519|gb|ACX95286.1| cytoplasmic domain of flagellar protein FhlB-like protein [Halothiobacillus neapolitanus c2] Length = 125 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 +P A+AL+Y TE P +VA GQ+L+A+++ A ++P+ E+P+LA + + I Sbjct: 13 HPISRAVALKYEGTE--LPQVVATGQHLVAEQIVARAKAADVPLVEDPALA-DMLASLDI 69 Query: 331 NSAIPPVFYKAVAQLI-YKIY 350 IP ++AVA+++ Y +Y Sbjct: 70 GDHIPNNLFRAVAEVLSYALY 90 >gi|119775405|ref|YP_928145.1| FlhB domain-containing protein [Shewanella amazonensis SB2B] gi|119767905|gb|ABM00476.1| FlhB domain protein [Shewanella amazonensis SB2B] Length = 100 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y N AP + AKG+ L+A+++ +A E I I E+P+LA + + +N +IP Sbjct: 8 AVALSY--DGNGAPKVTAKGEALLAEEIIALARECGIHIHEDPALA-NFLTMMELNESIP 64 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+L+ +Y Sbjct: 65 KELYVLIAELLSFVY 79 >gi|167835063|ref|ZP_02461946.1| putative flagellar biosynthesis protein [Burkholderia thailandensis MSMB43] Length = 108 Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L Sbjct: 20 DTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYRAVAEL 78 Query: 346 IYKIY 350 + +Y Sbjct: 79 LAWLY 83 >gi|91785606|ref|YP_560812.1| flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400] gi|91689560|gb|ABE32760.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400] Length = 119 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q+ + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLI 346 PP Y+AVA+L+ Sbjct: 68 PPQLYQAVAELL 79 >gi|163794135|ref|ZP_02188108.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199] gi|159180749|gb|EDP65268.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199] Length = 109 Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL + + AP ++AKG ++A+++ ++A+++++ + ++P LA+ + + V ++ IP Sbjct: 19 SIALSHDIGSDQAPTVIAKGYGVLAEQILRLAFDNDVKVRKDPDLAQ-ILEVVDVDCEIP 77 Query: 336 PVFYKAVAQLIYKIY 350 + AVA+++ +Y Sbjct: 78 VQAFAAVAEILTYVY 92 >gi|300820658|ref|ZP_07100809.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 119-7] gi|300526922|gb|EFK47991.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 119-7] Length = 188 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV 158 ++ G+KRI+ + + F+K+ + I+ + Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFL 144 >gi|187925735|ref|YP_001897377.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans PsJN] gi|187716929|gb|ACD18153.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans PsJN] Length = 119 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLI 346 PP Y+AVA+++ Sbjct: 68 PPQLYQAVAEML 79 >gi|296157427|ref|ZP_06840262.1| type III secretion exporter [Burkholderia sp. Ch1-1] gi|295892199|gb|EFG71982.1| type III secretion exporter [Burkholderia sp. Ch1-1] Length = 119 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q+ + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLI 346 PP Y+AVA+L+ Sbjct: 68 PPQLYQAVAELL 79 >gi|309793919|ref|ZP_07688344.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 145-7] gi|308122326|gb|EFO59588.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 145-7] Length = 188 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPNIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV 158 ++ G+KRI+ + + F+K+ + I+ + Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFL 144 >gi|301303006|ref|ZP_07209133.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 124-1] gi|300841670|gb|EFK69430.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 124-1] Length = 155 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 8/142 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMK 150 ++ G+KRI+ + + F+K Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVK 136 >gi|238916975|ref|YP_002930492.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750] gi|238872335|gb|ACR72045.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750] Length = 96 Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP ++A G+ IA+ + + A E ++PI+ + LA +L K + I IP Sbjct: 13 AVALEYTPGEQ-APKILATGRGYIAESIIEKAGEADVPIYADSKLADTLSK-LEIGEMIP 70 Query: 336 PVFYKAVAQLI 346 P Y VA+++ Sbjct: 71 PELYTVVAEIL 81 >gi|226327764|ref|ZP_03803282.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198] gi|225203468|gb|EEG85822.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198] Length = 227 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 36/205 (17%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A +G S+E SS+L L + + G + +T Sbjct: 1 MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKE---LSSVLMILGGVSLLWMSGGF-ITR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-----------------LLFM 103 +L+ +L F H + L+IP L+F+ Sbjct: 56 ELYAMLTEG------------FTFNHHLIGNENLLIPRFGSLIKQAVFALSPVFLGLVFV 103 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 G GS L+ I + +K K+ + G+KRI+S+N L K+ +K VG T Sbjct: 104 AIG-GSALLGGIN-FSSKSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSTFVGIAAT 161 Query: 164 ISLTENYFTMLDFISANPHSILYHA 188 + L N+ +L I+ P S L +A Sbjct: 162 VFLWHNWNDILHLITLPPLSALANA 186 >gi|167568373|ref|ZP_02361247.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis C6786] Length = 107 Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L+ Sbjct: 22 APRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLA 80 Query: 348 KIY 350 +Y Sbjct: 81 WLY 83 >gi|167561155|ref|ZP_02354071.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis EO147] Length = 105 Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L+ Sbjct: 22 APRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLA 80 Query: 348 KIY 350 +Y Sbjct: 81 WLY 83 >gi|307731337|ref|YP_003908561.1| type III secretion exporter [Burkholderia sp. CCGE1003] gi|307585872|gb|ADN59270.1| type III secretion exporter [Burkholderia sp. CCGE1003] Length = 123 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQGGDAAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLI 346 PP Y+AVA+L+ Sbjct: 68 PPQLYQAVAELL 79 >gi|170696027|ref|ZP_02887164.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] gi|170139019|gb|EDT07210.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] Length = 123 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y D AP ++AKG ++A + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDANGGDPAPRVIAKGYGMLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLI 346 PP Y+AVA+L+ Sbjct: 68 PPQLYQAVAELL 79 >gi|74317614|ref|YP_315354.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259] gi|74057109|gb|AAZ97549.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259] Length = 124 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Query: 258 MMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316 + E S T + + PT A A + + AP +VAKG+ ++A + + A + + E Sbjct: 17 LSEGASLGTAALQSRPTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHE 76 Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 L +L Q+ ++S IPP Y AVA+L+ +YH Sbjct: 77 SRELL-ALLMQIDLDSHIPPQLYIAVAELLAWLYH 110 >gi|312622764|ref|YP_004024377.1| type iii secretion exporter [Caldicellulosiruptor kronotskyensis 2002] gi|312203231|gb|ADQ46558.1| type III secretion exporter [Caldicellulosiruptor kronotskyensis 2002] Length = 92 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y E+ AP ++AKG+ +A+++ + A + +IP++E+ +A LF + + IP Sbjct: 9 AVAIKY-DLEDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVAEKLF-NLELQEYIP 66 Query: 336 PVFYKAVAQLI 346 Y+ +AQ++ Sbjct: 67 EDLYEVIAQIL 77 >gi|330883125|gb|EGH17274.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] Length = 116 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 A +++ NPTHYA+AL Y E P++ KG++ A + A + IP+ + L R+L Sbjct: 16 ADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTL 75 Query: 325 FKQVPINSAIPPVFYKAVAQLIYKI 349 ++ + IP +AV IYK+ Sbjct: 76 YR-AKVGKYIPRPTLQAVGH-IYKV 98 >gi|326791379|ref|YP_004309200.1| type III secretion exporter [Clostridium lentocellum DSM 5427] gi|326542143|gb|ADZ84002.1| type III secretion exporter [Clostridium lentocellum DSM 5427] Length = 94 Score = 43.9 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + +AP +VA G +A+ + + A +H++P++E+ LA ++ ++ + IP Sbjct: 9 AVALSY-QEDMNAPTIVASGSGKVAENILEEAKKHHVPVYEDKKLA-TILAELQVGEQIP 66 Query: 336 PVFYKAVAQLI 346 Y+ VA+++ Sbjct: 67 TELYELVAKVL 77 >gi|317122916|ref|YP_004102919.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM 12885] gi|315592896|gb|ADU52192.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM 12885] Length = 211 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A ALRY + AP +VA G +A+ + + A E +P P + ++P Sbjct: 18 TRPPRAAAALRYDPARDGAPRVVAAGFGAMAEAILRRAREAGVPQVTSPVA--PILARIP 75 Query: 330 INSAIPPVFYKAVAQLI 346 IPP Y+ VA+++ Sbjct: 76 PGQEIPPALYEVVARIM 92 >gi|295678020|ref|YP_003606544.1| type III secretion exporter [Burkholderia sp. CCGE1002] gi|295437863|gb|ADG17033.1| type III secretion exporter [Burkholderia sp. CCGE1002] Length = 122 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG L+A + + A E + + E P + SL QV +++ IPP Y+AVA+L+ Sbjct: 22 APRVVAKGYGLLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARIPPELYQAVAELL 79 >gi|150388629|ref|YP_001318678.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF] gi|149948491|gb|ABR47019.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF] Length = 96 Score = 43.5 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP + A GQ ++A+++ + A E+++ I+ + L + L + + + IP Sbjct: 10 AIALQYDVERDHAPRITAAGQGMMAERILERAEENDVAIYHDERLVKELI-EFKVGTEIP 68 Query: 336 PVFYKAVAQLI 346 Y+ VAQ++ Sbjct: 69 TELYEVVAQVL 79 >gi|325290208|ref|YP_004266389.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271] gi|324965609|gb|ADY56388.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271] Length = 101 Score = 43.5 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 I P A AL Y T AP +VAKG+ IA+K+ + A E IPI + +L +L V Sbjct: 8 IQIPKEKAAALAYEHT--GAPRVVAKGEGYIAQKIIEKAGEQGIPIQKNEALVNALM-LV 64 Query: 329 PINSAIPPVFYKAVAQLIYKIY 350 ++ IP Y+ VAQ++ IY Sbjct: 65 ELSGEIPVELYEVVAQVLAFIY 86 >gi|119899000|ref|YP_934213.1| flagellar related protein [Azoarcus sp. BH72] gi|119671413|emb|CAL95326.1| conserved hypothetical flagellar related protein [Azoarcus sp. BH72] Length = 125 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y E AP +VAKG+ LIA+++ + A + I + + L +L QV ++ Sbjct: 13 PRGEAVALTYASGEA-APRVVAKGRGLIAQEIIERARDAGIYVHQSRELV-ALLMQVDLD 70 Query: 332 SAIPPVFYKAVAQLIYKIYH 351 S IPP Y VA+L+ +Y Sbjct: 71 SHIPPQLYVVVAELLAWLYR 90 >gi|42527803|ref|NP_972901.1| FlhB domain-containing protein [Treponema denticola ATCC 35405] gi|41818631|gb|AAS12820.1| FlhB domain protein [Treponema denticola ATCC 35405] gi|325474963|gb|EGC78149.1| FlhB domain-containing protein [Treponema denticola F0402] Length = 87 Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP++ A G+ L AK++++ A + I I E+ +LA L I S IP Sbjct: 12 AVALSY-ALEAKAPIITASGRGLTAKRIKEAAERNKIKIVEDETLANILIHH-EIGSCIP 69 Query: 336 PVFYKAVAQL 345 YKAVA + Sbjct: 70 EYTYKAVAAI 79 >gi|270487693|ref|ZP_06204767.1| conserved domain protein [Yersinia pestis KIM D27] gi|270336197|gb|EFA46974.1| conserved domain protein [Yersinia pestis KIM D27] Length = 216 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 13/223 (5%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +++ K+E P++ K+ A +G+ P S++ ++ + ++ I LL F P ++ S Sbjct: 2 SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKALVSQSF 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPV-LNL 120 V +A + + + FLL +L + A L +IP + LF M L IP N Sbjct: 61 VSVAQLASQLDDQGALEQFLLANLFIFAKFLATLIP-IPLFSM------LATLIPGGWNF 113 Query: 121 NHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 VK P K++S GIKRI+S +N +K K +V + + + + +L + Sbjct: 114 TPVKLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQT 173 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 + F +L+ + + +DI S+H + K Sbjct: 174 LPLEEAITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKK 216 >gi|182419087|ref|ZP_02950341.1| flagella-associated protein [Clostridium butyricum 5521] gi|237669411|ref|ZP_04529393.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377042|gb|EDT74612.1| flagella-associated protein [Clostridium butyricum 5521] gi|237655298|gb|EEP52856.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 85 Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A AL+Y + +DAP + A G IA K+ + A E+N+PI L L V + Sbjct: 2 NQRKKAAALKY-EFNSDAPTVAASGMGYIADKIIEKAEENNVPIVYNKELT-DLLCNVDV 59 Query: 331 NSAIPPVFYKAVAQLI 346 + IP Y+AVA +I Sbjct: 60 GTEIPEELYEAVAHVI 75 >gi|87119456|ref|ZP_01075353.1| FlhB domain protein [Marinomonas sp. MED121] gi|86164932|gb|EAQ66200.1| FlhB domain protein [Marinomonas sp. MED121] Length = 80 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKG LIA+++ ++A E+NI + + P L L + + IP Sbjct: 5 AIALNY--DFHGAPTITAKGSGLIAERIMQVAEENNIILHKSPELVEVL-GHLELGDEIP 61 Query: 336 PVFYKAVAQLI 346 Y AVA++I Sbjct: 62 EALYLAVAEII 72 >gi|124384516|ref|YP_001028101.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei NCTC 10229] gi|254201857|ref|ZP_04908221.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei FMH] gi|254207188|ref|ZP_04913539.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei JHU] gi|147747751|gb|EDK54827.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei FMH] gi|147752730|gb|EDK59796.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei JHU] Length = 127 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 266 TIIITNPTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 T ++ A L Y D AP +VAKG L+A+++ + A + + + P + SL Sbjct: 21 TTTGSSRNERAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SL 79 Query: 325 FKQVPINSAIPPVFYKAVAQLIYKIY 350 QV +++ IPP Y+AVA+L+ +Y Sbjct: 80 LMQVDLDARIPPQLYQAVAELLAWLY 105 >gi|308173570|ref|YP_003920275.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens DSM 7] gi|307606434|emb|CBI42805.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens DSM 7] gi|328553497|gb|AEB23989.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens TA208] gi|328911711|gb|AEB63307.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens LL3] Length = 93 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + ++ AP ++A G+ +A+ + K A + +PI E+ +L L + + ++ IP Sbjct: 10 AVALHYDRQKDQAPKVIATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTVDDQIP 68 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA++ +Y Sbjct: 69 EALYETVAEIFSFVY 83 >gi|302872175|ref|YP_003840811.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47] gi|302575034|gb|ADL42825.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47] Length = 92 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG+ +A+K+ + A + NIP++++ ++A LF + + IP Y+ VAQ++ Sbjct: 20 APKVVAKGKGYVAEKIIEKAKQENIPVYKDQNVAEKLF-NLELQEYIPEDLYEVVAQIL 77 >gi|297544850|ref|YP_003677152.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842625|gb|ADH61141.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 93 Score = 43.1 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ AP ++AKGQ IA K+ + A + +PI+++ + L+ + I IP Sbjct: 9 AVALKY-DVQDIAPKVIAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66 Query: 336 PVFYKAVAQ-LIYKIYHKKI 354 Y VA+ LI+ Y KI Sbjct: 67 EDLYNIVAEILIFIGYLDKI 86 >gi|330818617|ref|YP_004362322.1| Flagellar protein FhlB [Burkholderia gladioli BSR3] gi|327371010|gb|AEA62366.1| Flagellar protein FhlB [Burkholderia gladioli BSR3] Length = 118 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG L+A+ + A E + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARAREAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA+L+ +Y Sbjct: 68 PPALYQAVAELLAWLY 83 >gi|311068129|ref|YP_003973052.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942] gi|310868646|gb|ADP32121.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942] Length = 93 Score = 43.1 bits (100), Expect = 0.065, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y + ++ AP ++A G+ IA+ + A + +PI E+ +L L + + ++ Sbjct: 6 PLRKAVALHYDEQKDKAPKVIATGRGHIAENIIAEAKKAGVPIQEDRTLVE-LMRHLTVD 64 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y+ VA++ +Y Sbjct: 65 DQIPEALYETVAEIFSFVY 83 >gi|121601225|ref|YP_994245.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei SAVP1] gi|121230035|gb|ABM52553.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei SAVP1] Length = 150 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 266 TIIITNPTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 T ++ A L Y D AP +VAKG L+A+++ + A + + + P + SL Sbjct: 44 TTTGSSRNERAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SL 102 Query: 325 FKQVPINSAIPPVFYKAVAQLIYKIY 350 QV +++ IPP Y+AVA+L+ +Y Sbjct: 103 LMQVDLDARIPPQLYQAVAELLAWLY 128 >gi|119476289|ref|ZP_01616640.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine gamma proteobacterium HTCC2143] gi|119450153|gb|EAW31388.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine gamma proteobacterium HTCC2143] Length = 113 Score = 43.1 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A +L+Y + AP++ A G +A+++ IA +H IP+FE +L L + + Sbjct: 9 PEKKAASLQY--DGSGAPIVSAAGSGEVAEQIIAIARQHEIPLFENEALLE-LLVNIGVG 65 Query: 332 SAIPPVFYKAVAQLI---YKIYHK 352 IP Y +AQ+I YKI K Sbjct: 66 EEIPESLYLCIAQVIAFAYKIQGK 89 >gi|222528969|ref|YP_002572851.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii DSM 6725] gi|222455816|gb|ACM60078.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii DSM 6725] Length = 92 Score = 42.7 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y E+ AP ++AKG+ +A+++ + A + +IP++E+ + LF + + IP Sbjct: 9 AVAIKY-DLEDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVVEKLF-NLELQEYIP 66 Query: 336 PVFYKAVAQLI 346 Y+ VAQ++ Sbjct: 67 EDLYEVVAQIL 77 >gi|148264415|ref|YP_001231121.1| flagellar protein FhlB-like protein [Geobacter uraniireducens Rf4] gi|146397915|gb|ABQ26548.1| cytoplasmic domain of flagellar protein FhlB-like protein [Geobacter uraniireducens Rf4] Length = 94 Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP ++AKG + A+ + +A E+ + + E P L +L QV + IPP Y+AVA+L+ Sbjct: 22 APRVIAKGCGVTAEAIIALARENGVYVHESPDLM-NLLLQVDQDRFIPPELYRAVAELLA 80 Query: 348 KIY 350 +Y Sbjct: 81 WLY 83 >gi|206558931|ref|YP_002229691.1| putative export system protein [Burkholderia cenocepacia J2315] gi|198034968|emb|CAR50840.1| putative export system protein [Burkholderia cenocepacia J2315] Length = 105 Score = 42.7 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 11/93 (11%) Query: 259 MEATSRATIIITNPTHYALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M ATSR A AL Y DA P +VAKG ++A+ + A++ + + Sbjct: 1 MSATSRKR---------AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTA 51 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 P + SL QV ++ IPP Y+AVA L+ +Y Sbjct: 52 PEMV-SLLMQVDLDDRIPPQLYQAVADLLAWLY 83 >gi|157692287|ref|YP_001486749.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] gi|157681045|gb|ABV62189.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] Length = 91 Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 + P A+AL Y + + AP +VA G +A + + A + +PI E+ +L L + + Sbjct: 4 SKPLRRAVALHYDEEKQKAPKVVATGSGYVADNIIEEAKKSGVPIQEDRNLV-ELMRHLT 62 Query: 330 INSAIPPVFYKAVAQLIYKIY 350 ++ IP Y VA++ IY Sbjct: 63 LDEEIPEALYDTVAEIFSFIY 83 >gi|323527687|ref|YP_004229840.1| type III secretion exporter [Burkholderia sp. CCGE1001] gi|323384689|gb|ADX56780.1| type III secretion exporter [Burkholderia sp. CCGE1001] Length = 122 Score = 42.7 bits (99), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y +D AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAHGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLI 346 PP Y+AVA+L+ Sbjct: 68 PPQLYQAVAELL 79 >gi|311105963|ref|YP_003978816.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8] gi|310760652|gb|ADP16101.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8] Length = 105 Score = 42.7 bits (99), Expect = 0.093, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y + ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP Sbjct: 19 AVAISY-EDKDGAPRVVAKGYGQLADTIVRAAQENGLYVHESRELV-GLLMQVDLDAHIP 76 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 77 PQLYVAVAELLAWLY 91 >gi|194014522|ref|ZP_03053139.1| FlhB domain protein [Bacillus pumilus ATCC 7061] gi|194013548|gb|EDW23113.1| FlhB domain protein [Bacillus pumilus ATCC 7061] Length = 91 Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 + P A+AL Y + + AP +VA G +A + + A + +PI E+ +L L + + Sbjct: 4 SKPLRRAVALHYDEEKQKAPKVVATGSGYVADHIIEEAKKSGVPIQEDRNLVE-LMRHLT 62 Query: 330 INSAIPPVFYKAVAQLIYKIY 350 ++ IP Y VA++ IY Sbjct: 63 LDEEIPEALYDTVAEIFSFIY 83 >gi|187935380|ref|YP_001887350.1| flagella-associated protein [Clostridium botulinum B str. Eklund 17B] gi|188588297|ref|YP_001922288.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska E43] gi|251780672|ref|ZP_04823592.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187723533|gb|ACD24754.1| flagella-associated protein [Clostridium botulinum B str. Eklund 17B] gi|188498578|gb|ACD51714.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska E43] gi|243084987|gb|EES50877.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 86 Score = 42.4 bits (98), Expect = 0.099, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y +AP++ A G IA K+ + A E+ +PI LA +L V + IP Sbjct: 7 AAALKYELNNTEAPMIAASGMGHIADKIIEKAQENEVPIVYNKELA-NLLCNVDVGDEIP 65 Query: 336 PVFYKAVAQLI 346 Y+AVA +I Sbjct: 66 TELYEAVAHVI 76 >gi|148270251|ref|YP_001244711.1| FlhB domain-containing protein [Thermotoga petrophila RKU-1] gi|170288949|ref|YP_001739187.1| FlhB domain-containing protein [Thermotoga sp. RQ2] gi|281412554|ref|YP_003346633.1| FlhB domain protein [Thermotoga naphthophila RKU-10] gi|147735795|gb|ABQ47135.1| FlhB domain protein [Thermotoga petrophila RKU-1] gi|170176452|gb|ACB09504.1| FlhB domain protein [Thermotoga sp. RQ2] gi|281373657|gb|ADA67219.1| FlhB domain protein [Thermotoga naphthophila RKU-10] Length = 86 Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T+ A+AL+Y + AP +VAKG +A+++ ++A + IPI E P + L + + Sbjct: 3 TDEIKKAVALKYDPSRTSAPEVVAKGVGEVAERIIEVAKRYGIPIEERPDIIDDLLR-LD 61 Query: 330 INSAIPPVFYKAVAQL 345 + S IP Y +A++ Sbjct: 62 LFSEIPEEMYLVIAEI 77 >gi|134297235|ref|YP_001120970.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4] gi|134140392|gb|ABO56135.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4] Length = 105 Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG L+A + + A + + + P + SL QV ++ I Sbjct: 7 AAALVYDPKGGDAAPRVVAKGYGLVADMIVERARDAGLYVHTAPEMV-SLLMQVDLDDRI 65 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 66 PPQLYQAVADLLAWLY 81 >gi|312134792|ref|YP_004002130.1| type iii secretion exporter [Caldicellulosiruptor owensensis OL] gi|311774843|gb|ADQ04330.1| type III secretion exporter [Caldicellulosiruptor owensensis OL] Length = 92 Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP ++AKG+ +A+K+ + A + IP+FE +A LF + + IP Y+ VAQ++ Sbjct: 20 APKVIAKGKGYVAEKIIEKAKQEEIPVFEHKDVAEKLF-SLELQEYIPEDLYEVVAQIL 77 >gi|309389531|gb|ADO77411.1| FlhB domain protein [Halanaerobium praevalens DSM 2228] Length = 89 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL+Y Q + AP ++A G+ IA+ + K A E NIPI ++ + + L ++ I IP Sbjct: 10 VALKYDQKNDQAPRIIASGKGSIAEMIIKKAKEENIPIKKDKDVVQVLA-ELNIGEQIPE 68 Query: 337 VFYKAVAQLI 346 Y +A+++ Sbjct: 69 ELYTVIAEIL 78 >gi|293605030|ref|ZP_06687424.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC 43553] gi|292816579|gb|EFF75666.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC 43553] Length = 105 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP Sbjct: 19 AVAISY-DDKDGAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 76 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 77 PQLYVAVAELLAWLY 91 >gi|253681686|ref|ZP_04862483.1| flagella-associated protein [Clostridium botulinum D str. 1873] gi|253561398|gb|EES90850.1| flagella-associated protein [Clostridium botulinum D str. 1873] Length = 90 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + DAP++ A G IA K+ + A ++ +P+ LA L V + S+IP Sbjct: 9 AAALKY-ELNYDAPIVSAAGMGHIADKIVEEAKKNEVPVVYNKELA-DLLTNVDVGSSIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|187777232|ref|ZP_02993705.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC 15579] gi|187774160|gb|EDU37962.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC 15579] Length = 89 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 +II N A AL+Y ++ +PV+ A G +A K+ + A E +PI + LA +L Sbjct: 1 MIILNERKKAAALKYEESYT-SPVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58 Query: 327 QVPINSAIPPVFYKAVAQLI 346 + I +IP Y AVA++I Sbjct: 59 NIDIGDSIPYELYDAVAKVI 78 >gi|115353155|ref|YP_774994.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD] gi|115283143|gb|ABI88660.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD] Length = 106 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|331268716|ref|YP_004395208.1| flagella-associated protein [Clostridium botulinum BKT015925] gi|329125266|gb|AEB75211.1| flagella-associated protein [Clostridium botulinum BKT015925] Length = 90 Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + DAP++ A G IA K+ + A ++ +P+ LA L V + S+IP Sbjct: 9 AAALKY-ELNYDAPIVSAAGMGRIADKIIEEAKKNEVPVVYNKELA-DLLTNVDVGSSIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|30250018|ref|NP_842088.1| flagellar biosynthetic protein [Nitrosomonas europaea ATCC 19718] gi|30139125|emb|CAD85989.1| possible similar to flagellar biosynthetic protein [Nitrosomonas europaea ATCC 19718] Length = 119 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 E T P A+AL Y + AP +VAKG+ LIA+++ + A E + + E Sbjct: 14 EPTDSPAPPEHTPIPGAVALAY-HSGMTAPQVVAKGRGLIAEEIIRRAQEAGVYVHESAE 72 Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 L +L QV ++ IPP Y AVA+L+ +Y Sbjct: 73 LV-ALLMQVDLDDHIPPELYIAVAELLAWLY 102 >gi|192361951|ref|YP_001982536.1| FlhB domain-containing protein [Cellvibrio japonicus Ueda107] gi|190688116|gb|ACE85794.1| FlhB domain protein [Cellvibrio japonicus Ueda107] Length = 100 Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP + AKG +A+++ IA EH +P+ + PSL L + + +P Y AVA +I Sbjct: 21 NAPQVTAKGAGKVAEEIIAIAQEHGVPLCDNPSLV-DLLVNLELGDEVPEALYIAVAYII 79 Query: 347 YKIYH 351 Y Sbjct: 80 AFAYQ 84 >gi|168334054|ref|ZP_02692270.1| hypothetical protein Epulo_03924 [Epulopiscium sp. 'N.t. morphotype B'] Length = 84 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +AP + AKG+ +A+ + A ++ IP++E+ +LA +L +V I S IP Sbjct: 4 AVALSY---KAEAPEVTAKGKGKVAENIIATAEKNEIPVYEDKNLA-NLLTEVEIGSQIP 59 Query: 336 PVFYKAVAQLI 346 Y+ VA+++ Sbjct: 60 EEVYELVAKIL 70 >gi|212640409|ref|YP_002316929.1| hypothetical protein Aflv_2591 [Anoxybacillus flavithermus WK1] gi|212561889|gb|ACJ34944.1| Uncharacterized protein containing cytoplasmic domain of flagellar protein FhlB [Anoxybacillus flavithermus WK1] Length = 95 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A +RY Q + AP +VA G+ +A+K+ ++A ++ +PI ++ +L + L + + IP Sbjct: 17 AAVIRYEQGDK-APTVVAHGRGYVAEKIIELAKQNGVPIEQDAALVQHLL-DLDLGDTIP 74 Query: 336 PVFYKAVAQLIYKI 349 P Y +A+++ I Sbjct: 75 PQLYAVIAEILILI 88 >gi|171317301|ref|ZP_02906498.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5] gi|171097562|gb|EDT42399.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5] Length = 106 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|172062010|ref|YP_001809662.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6] gi|171994527|gb|ACB65446.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6] Length = 106 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|15639896|ref|NP_219346.1| hypothetical protein TP0911 [Treponema pallidum subsp. pallidum str. Nichols] gi|189026134|ref|YP_001933906.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum SS14] gi|3323223|gb|AAC65862.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018709|gb|ACD71327.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum SS14] gi|291060268|gb|ADD73003.1| FlhB domain protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 83 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL Y T + AP++VA G IA+K+ +IA + +I + ++ LAR L + I + IP Sbjct: 8 SVALSY-ATGDKAPIIVASGTGAIAEKIVEIAKKFDIALVQDELLARVLSEH-RIGACIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+ V+ + +Y ++ Sbjct: 66 PETYQVVSAIFAFLYTQQ 83 >gi|556364|gb|AAA50308.1| flhB [Proteus mirabilis] Length = 74 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IP+ E P LAR+L++ I AIP Y AVA+++ +Y Sbjct: 1 IPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQ 40 >gi|148378183|ref|YP_001252724.1| hypothetical protein CBO0180 [Clostridium botulinum A str. ATCC 3502] gi|148287667|emb|CAL81732.1| putative protein exporter [Clostridium botulinum A str. ATCC 3502] Length = 89 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 ++I N A AL+Y ++ +PV+ A G +A K+ + A E +PI + LA +L Sbjct: 1 MVILNERKKAAALKYEESYT-SPVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58 Query: 327 QVPINSAIPPVFYKAVAQLI 346 + I +IP Y AVA++I Sbjct: 59 NIDIGDSIPYELYDAVAKVI 78 >gi|326796438|ref|YP_004314258.1| type III secretion exporter [Marinomonas mediterranea MMB-1] gi|326547202|gb|ADZ92422.1| type III secretion exporter [Marinomonas mediterranea MMB-1] Length = 82 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +AP + AKG L+A+++ ++A E+++ + E P L L + I IP Sbjct: 4 AVALQY--DYQNAPKVTAKGSGLLAERIMEVAEENDVLLHESPELVEVL-ATLEIGDEIP 60 Query: 336 PVFYKAVAQLI 346 Y AVA++I Sbjct: 61 ESLYLAVAEII 71 >gi|170699624|ref|ZP_02890662.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10] gi|170135440|gb|EDT03730.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10] Length = 106 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|311030145|ref|ZP_07708235.1| hypothetical protein Bm3-1_06301 [Bacillus sp. m3-13] Length = 98 Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y Q + APV+ AKG +IA+ + + A +H IP+ E+ +L L + S IP Sbjct: 11 AVAIKYDQAKTVAPVVKAKGAGIIAENIIQEAKKHQIPLQEDGALLEVLMELELNES-IP 69 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ +Y+ Sbjct: 70 EELYEVVAEVLAYVYN 85 >gi|107023990|ref|YP_622317.1| flagellar protein FhlB [Burkholderia cenocepacia AU 1054] gi|116691077|ref|YP_836700.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424] gi|170734411|ref|YP_001766358.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3] gi|254246929|ref|ZP_04940250.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184] gi|105894179|gb|ABF77344.1| putative flagellar protein FhlB [Burkholderia cenocepacia AU 1054] gi|116649166|gb|ABK09807.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424] gi|124871705|gb|EAY63421.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184] gi|169817653|gb|ACA92236.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3] Length = 105 Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG ++A+ + A++ + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|289523587|ref|ZP_06440441.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503279|gb|EFD24443.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 100 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + + AP ++A G+ IA+K+ A + IP+ E+ SL S+ V + IP Sbjct: 13 AAALRYDKKLDSAPRVIASGRGWIAEKIIDEARKRGIPLVED-SLLVSVLLGVNLGEEIP 71 Query: 336 PVFYKAVAQLI 346 Y AVA+++ Sbjct: 72 EEAYLAVARIL 82 >gi|167034893|ref|YP_001670124.1| hypothetical protein PputGB1_3898 [Pseudomonas putida GB-1] gi|166861381|gb|ABY99788.1| conserved hypothetical protein [Pseudomonas putida GB-1] Length = 112 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y AP L AKG + +A+ + +A EH +PI+E L R L ++ + Sbjct: 6 TRQAIALNY--DGQQAPTLSAKGDDALAEAILALAREHEVPIYENAELVR-LLARLELGE 62 Query: 333 AIPPVFYKAVAQLI 346 IP Y +A++I Sbjct: 63 QIPEALYLTIAEII 76 >gi|114320959|ref|YP_742642.1| flagellar protein FhlB-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227353|gb|ABI57152.1| Uncharacterized cytoplasmic domain of flagellar protein FhlB-like protein [Alkalilimnicola ehrlichii MLHE-1] Length = 119 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP + AKG +A+++ ++A EH++P+ + L ++ Q+ + AIP Sbjct: 18 AVALEY--GGQGAPRVTAKGAGPLAERIIELAAEHDVPLETDADLV-AVLAQLELEQAIP 74 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA++I Y Sbjct: 75 ESLYRVVAEVIAFAY 89 >gi|217077929|ref|YP_002335647.1| flagellar biosynthesis [Thermosipho africanus TCF52B] gi|217037784|gb|ACJ76306.1| flagellar biosynthesis [Thermosipho africanus TCF52B] Length = 75 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL+Y + P ++AKG+ +AKK+ +IA + +PI + L L+K + + IP Sbjct: 1 MALKYDPKVDFVPFVIAKGKEEVAKKILEIAKKSGVPIVKSSELVDELYK-LKVLEEIPK 59 Query: 337 VFYKAVAQLI 346 Y AVA++I Sbjct: 60 KLYLAVAEII 69 >gi|317406222|gb|EFV86468.1| flagellar protein [Achromobacter xylosoxidans C54] Length = 107 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP Sbjct: 18 AVAISY-DDKDAAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 75 Query: 336 PVFYKAVAQLIYKIY 350 P Y AVA+L+ +Y Sbjct: 76 PQLYVAVAELLAWLY 90 >gi|325526461|gb|EGD04041.1| putative flagellar protein FhlB [Burkholderia sp. TJI49] Length = 105 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG +A+ + A++ + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|255528146|ref|ZP_05394973.1| conserved hypothetical protein [Clostridium carboxidivorans P7] gi|255508159|gb|EET84572.1| conserved hypothetical protein [Clostridium carboxidivorans P7] Length = 87 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY Q +APV+ A G +A K+ + A + N+PI + L L V + +IP Sbjct: 7 AAALRYEQGY-EAPVVTAAGMGYVADKIIENAEKANVPIVYDKELT-DLLSSVDVGDSIP 64 Query: 336 PVFYKAVAQLI 346 Y AVA++I Sbjct: 65 FELYDAVAKVI 75 >gi|154175076|ref|YP_001408824.1| putative flagellar assembly protein [Campylobacter curvus 525.92] gi|112803684|gb|EAU01028.1| putative flagellar assembly protein [Campylobacter curvus 525.92] Length = 215 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 33/155 (21%), Positives = 81/155 (52%), Gaps = 4/155 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D KTE +SKKIEDA +GN P S++ + F++++ ++ LL + V + Sbjct: 1 MADDD--QEKTEEATSKKIEDAKKDGNVPKSQDIAGFATLVIAILVLLAMLNFMREQVVA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L++ + ++ + + ++ L+ S +++P + + GI + ++Q + Sbjct: 59 -LYIYYSKFIGVEITPSALNLIVINTLARSL-LMILPICICVAIAGIVANVMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 + P +++ +G+K ++S+ ++ +K K+ Sbjct: 117 KPITPDINKINPLKGLKNLFSMKKAIDSVKIVAKV 151 >gi|302343755|ref|YP_003808284.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii DSM 2075] gi|301640368|gb|ADK85690.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii DSM 2075] Length = 106 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALRY + + AKG+ +A+++ ++A +H +PI ++P L + ++ I+ I Sbjct: 16 AVALRYGPEGHETTGAVAAKGRLRLAERIIELARQHGVPIKQDPDLVE-ILARLDIDEEI 74 Query: 335 PPVFYKAVAQLI 346 PP Y A+++ Sbjct: 75 PPELYVVAAEIL 86 >gi|167751329|ref|ZP_02423456.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702] gi|167655575|gb|EDR99704.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702] gi|291530383|emb|CBK95968.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Eubacterium siraeum 70/3] gi|291557246|emb|CBL34363.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Eubacterium siraeum V10Sc8a] Length = 94 Score = 40.8 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y N APV+VA G +AKK+ IA E+ +P++ + S A +L + IP Sbjct: 11 AAALKYNPDLNYAPVVVASGLGELAKKIINIADENGVPVYRDDSTA-ALLVMLNSGETIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ +A + ++ + Sbjct: 70 VELYRIIAAIYAEVVY 85 >gi|302873574|ref|YP_003842207.1| type III secretion exporter [Clostridium cellulovorans 743B] gi|307688245|ref|ZP_07630691.1| type III secretion exporter [Clostridium cellulovorans 743B] gi|302576431|gb|ADL50443.1| type III secretion exporter [Clostridium cellulovorans 743B] Length = 88 Score = 40.8 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y Q ++P++ A+G +A+K+ + A E+++PI +A L V + +IP Sbjct: 7 AAALKYEQGY-ESPIVAAQGVGYVAEKIVEKADENDVPIVYNKEMA-DLLTNVDVGDSIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y AVA+++ I Sbjct: 65 EELYAAVAEIMAHI 78 >gi|152997420|ref|YP_001342255.1| hypothetical protein Mmwyl1_3417 [Marinomonas sp. MWYL1] gi|150838344|gb|ABR72320.1| conserved hypothetical protein [Marinomonas sp. MWYL1] Length = 82 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP +VAKG L+A+K+ +A E+++ + + P L + + + IP Sbjct: 4 AVALKY--DFSAAPTVVAKGSGLLAEKILAVAKENDVLLHQSPELVE-MLSTLELGEEIP 60 Query: 336 PVFYKAVAQLI 346 Y AVA++I Sbjct: 61 ESLYLAVAEVI 71 >gi|118443083|ref|YP_877449.1| flagella-associated protein [Clostridium novyi NT] gi|118133539|gb|ABK60583.1| flagella-associated protein [Clostridium novyi NT] Length = 90 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + DAP++ A G +A K+ + A ++ +P+ LA L V + S IP Sbjct: 9 AAALKY-EMNYDAPIVSAAGMGYVADKIIEEAKKNEVPVVYNKELAE-LLTNVDVGSYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|78067877|ref|YP_370646.1| putative flagellar protein FhlB [Burkholderia sp. 383] gi|77968622|gb|ABB10002.1| putative flagellar protein FhlB [Burkholderia sp. 383] Length = 105 Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P +VAKG +A+ + A++ + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|217032175|ref|ZP_03437674.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128] gi|216946165|gb|EEC24774.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128] Length = 164 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 29/175 (16%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFF---FSPGIYSV 58 A + KTE PS+KKI+ A EGN P S E L + +++ I+ +++ FS V Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSEMYRHV 61 Query: 59 TSDLHVLLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 D + + + Q ++ FLL L +V LF + G ++ Sbjct: 62 LKDFSLDFSKESVQELFNQLAKDTFLLLLPILIILMVVA---FLFNVLQFGWLFAPKV-- 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 ++P F +++ G+K ++S+ L++ G++IT+ + +F+ Sbjct: 117 -----IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLVFFS 155 >gi|221199692|ref|ZP_03572735.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2M] gi|221208703|ref|ZP_03581703.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2] gi|221215527|ref|ZP_03588490.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD1] gi|221164515|gb|EED96998.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD1] gi|221171514|gb|EEE03961.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2] gi|221179931|gb|EEE12335.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2M] Length = 105 Score = 40.0 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y D AP +VAKG +A+ + A E + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKEAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|207109322|ref|ZP_03243484.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPKX_438_CA4C1] Length = 134 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 27/46 (58%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF 51 A + KTE PS+KKI+ A EGN P S E +LA L+ + FF Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF 47 >gi|288555870|ref|YP_003427805.1| FlhB protein [Bacillus pseudofirmus OF4] gi|288547030|gb|ADC50913.1| FlhB protein [Bacillus pseudofirmus OF4] Length = 99 Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 3/82 (3%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 I PT A +RY + + AP +VA+G+ +A ++ ++A++++I + E+ +L +L Sbjct: 14 IQNGPT--AAVIRYDKEDGSAPKVVAQGRGQLANQIIQLAHKNDIHMQEDATLVSNLL-D 70 Query: 328 VPINSAIPPVFYKAVAQLIYKI 349 + + IPP Y +A+++ I Sbjct: 71 MDLGDNIPPQLYSVMAEILLLI 92 >gi|150019417|ref|YP_001311671.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052] gi|149905882|gb|ABR36715.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052] Length = 86 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A AL+Y + +DAPV+ A G IA K+ + A ++ +PI L L V + Sbjct: 2 NQRKKAAALKY-EFNSDAPVVTAAGMGHIADKIIEKATQNEVPIVYNKELT-DLLCNVDV 59 Query: 331 NSAIPPVFYKAVAQLI 346 IP Y+AVA +I Sbjct: 60 GDEIPTELYEAVAHVI 75 >gi|317009220|gb|ADU79800.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7] Length = 61 Score = 40.0 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 27/49 (55%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG 54 A + KTE PS+KKI+ A EGN P S E +LA LI + F G Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFLYGG 50 >gi|74317194|ref|YP_314934.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] gi|74056689|gb|AAZ97129.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] Length = 261 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 54/272 (19%), Positives = 118/272 (43%), Gaps = 40/272 (14%) Query: 3 ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62 END ++TE S+++++DA G+ P S E + + +LA I +L + P + L Sbjct: 4 ENDL--SRTEPASARRLQDARAAGDVPRSSEFAAWLVLLAA-IGVLSWQGP---RLLGSL 57 Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSA----------SRLVIPGLLLFMMFGIGSYLI 112 L+A+A Q + S V +L A + L+ P LL ++ GS+ Sbjct: 58 QTLVATALQHAAKPFSPAVVEAVGSALWAVLPVLGAVFVAALIAPLLLSRWVYAPGSHPR 117 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 +R P + R++S++++ + + +K+ L + + + Sbjct: 118 RRHPF----------------HAVARLFSLDSVADLALTLLKVALAALAVWWAFGASTPG 161 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 + + + A + ++ ++ +A + LD GW + ++ + M+ QE+ E Sbjct: 162 IAALDAIAADAAPEAAAGWLGHGVLALVAGLALVAALDAGWQWLRYLRRHAMTWQEVLAE 221 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264 +++ +P I R+++R + +A +R Sbjct: 222 AREAEVHPEI--------RAQLRGRQQQAGAR 245 >gi|302338392|ref|YP_003803598.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293] gi|301635577|gb|ADK81004.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293] Length = 84 Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKG AK++ +A +H +P+ + L + L+ + + IP Sbjct: 5 AIALAYDRDTYSAPRITAKGSGEAAKRLIALAKKHGVPVMGDEELVQRLY-LFDLEAVIP 63 Query: 336 PVFYKAVAQL 345 Y+ VA++ Sbjct: 64 EDLYEVVAEI 73 >gi|167585157|ref|ZP_02377545.1| putative flagellar protein FhlB [Burkholderia ubonensis Bu] Length = 105 Score = 39.7 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y DA P ++AKG +A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDAKGGDAAPRVIAKGYGAVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|150021423|ref|YP_001306777.1| flagellar protein FhlB-like protein [Thermosipho melanesiensis BI429] gi|149793944|gb|ABR31392.1| cytoplasmic domain of flagellar protein FhlB-like protein [Thermosipho melanesiensis BI429] Length = 89 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 ++ T+ A+AL+Y + P +VAKG+ +A+K+ ++A + +PI + LFK Sbjct: 1 MVYTSREKLAVALKYNPKTDFVPFVVAKGKEEVAEKIMELAKKSGVPIVRSSKIVGELFK 60 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + IP Y +A++I I +K Sbjct: 61 -LNVLEEIPEKMYVVIAEIIAFIQSQK 86 >gi|161526225|ref|YP_001581237.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC 17616] gi|189349061|ref|YP_001944689.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC 17616] gi|160343654|gb|ABX16740.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC 17616] gi|189333083|dbj|BAG42153.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC 17616] Length = 105 Score = 39.7 bits (91), Expect = 0.78, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y D AP +VAKG +A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIY 350 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLY 83 >gi|317012580|gb|ADU83188.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Lithuania75] Length = 61 Score = 39.3 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG 54 A + KTE PS+KKI+ A EGN P S E +LA L+ + F G Sbjct: 2 AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFLYGG 50 >gi|153933699|ref|YP_001382583.1| hypothetical protein CLB_0219 [Clostridium botulinum A str. ATCC 19397] gi|153935408|ref|YP_001386136.1| hypothetical protein CLC_0233 [Clostridium botulinum A str. Hall] gi|153938549|ref|YP_001389542.1| hypothetical protein CLI_0242 [Clostridium botulinum F str. Langeland] gi|168177512|ref|ZP_02612176.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|170757316|ref|YP_001779806.1| hypothetical protein CLD_0601 [Clostridium botulinum B1 str. Okra] gi|170761762|ref|YP_001785507.1| hypothetical protein CLK_3357 [Clostridium botulinum A3 str. Loch Maree] gi|226947401|ref|YP_002802492.1| hypothetical protein CLM_0228 [Clostridium botulinum A2 str. Kyoto] gi|152929743|gb|ABS35243.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931322|gb|ABS36821.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] gi|152934445|gb|ABS39943.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|169122528|gb|ACA46364.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] gi|169408751|gb|ACA57162.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] gi|182670835|gb|EDT82809.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|226844528|gb|ACO87194.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] gi|295317640|gb|ADF98017.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] gi|322804447|emb|CBZ01997.1| flagellar biosynthesis related protein [Clostridium botulinum H04402 065] Length = 86 Score = 39.3 bits (90), Expect = 0.84, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A AL+Y ++ +PV+ A G +A K+ + A E +PI + LA +L + I Sbjct: 2 NERKKAAALKYEESYT-SPVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDI 59 Query: 331 NSAIPPVFYKAVAQLI 346 +IP Y AVA++I Sbjct: 60 GDSIPYELYDAVAKVI 75 >gi|168185551|ref|ZP_02620186.1| flagella-associated protein [Clostridium botulinum C str. Eklund] gi|169296547|gb|EDS78680.1| flagella-associated protein [Clostridium botulinum C str. Eklund] Length = 90 Score = 39.3 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + DAP++ A G +A K+ + A + +P+ LA L V + S IP Sbjct: 9 AAALKY-EMNYDAPIVSAAGMGHVADKIIEEAEKSEVPVVYNKELAE-LLTNVDVGSYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|330874619|gb|EGH08768.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] Length = 234 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 45/256 (17%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ L L+ L+ V S++ + LA Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VVSEITLGLAD 46 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117 + +L+ + + F S +AS +I LL F + +G ++ R+ Sbjct: 47 DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106 Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 L++N + P F K+++S N++N + S +K + +G + + + Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159 Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 ++ ++ + + +HA + R +L +IL + + ++D + KL+MS + Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218 Query: 228 EIKDEIKQSYGNPIIK 243 +IK E KQS G+P +K Sbjct: 219 DIKKEYKQSEGDPHVK 234 >gi|301026126|ref|ZP_07189600.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 196-1] gi|299879821|gb|EFI88032.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 196-1] Length = 188 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 8/150 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV 158 ++ G+KRI+ + + +K+ + II + Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFL 144 >gi|127512324|ref|YP_001093521.1| FlhB domain-containing protein [Shewanella loihica PV-4] gi|126637619|gb|ABO23262.1| FlhB domain protein [Shewanella loihica PV-4] Length = 118 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PT A ALRY AP + AKG++L+A+++ IA E I I ++ +L+ + +++ I Sbjct: 23 PTQ-AAALRY--DGKLAPQITAKGEDLVAEEIIAIAKEAGIYIHQDANLS-NFLQKLEIG 78 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 79 EEIPKELYLLIAELIAFVY 97 >gi|323155905|gb|EFZ42072.1| escU domain protein [Escherichia coli EPECa14] Length = 55 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 206 LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 +V D + H+ K+KMSK E+K E K + GNP IK ++ + Sbjct: 8 FSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL 51 >gi|304404391|ref|ZP_07386052.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9] gi|304346198|gb|EFM12031.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9] Length = 588 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 14/131 (10%) Query: 50 FFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109 F+ G+ VT L+ A + +R +DI +T +LS V+ G+ + MF + Sbjct: 167 LFAIGLGIVTFLLNTAFAGSFRRINDDIQRGAGKMTQ-ALSD---VLAGMPIVKMFALDR 222 Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK---SFVKIILVGTIITISL 166 +I++ N N S KRV R Y++ ++VN + SFV I+++G ++ ++ Sbjct: 223 IIIRKYDDTNANVANLSIKRV-------RKYAVLDIVNSIMGSLSFVGIVIIGGVMALNK 275 Query: 167 TENYFTMLDFI 177 ++ T++ F+ Sbjct: 276 GTDFGTVMAFV 286 >gi|224372061|ref|YP_002606226.1| hypothetical protein HRM2_p00680 [Desulfobacterium autotrophicum HRM2] gi|223694780|gb|ACN18062.1| hypothetical protein HRM2_p00680 [Desulfobacterium autotrophicum HRM2] Length = 381 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 12/107 (11%) Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK-----QEIKDEIKQSYG 238 ++ +F+T RK+ ++I +F+ +T + HQWY+ +++K +EI + Q+ Sbjct: 1 MINKSFYTQRKIKLIISIFLC-VTAISTTTGCHQWYTAYEINKGQLRSREILPNLIQALD 59 Query: 239 NPIIKNRQKSIAR-SRIRHKMMEATSRATIII-----TNPTHYALAL 279 +P + R+ ++ R SR++ EA + I+ + HYA+ + Sbjct: 60 DPKPRTRRAALQRISRLKLSAQEAIPKVVILAKTDDDEDTRHYAIKV 106 >gi|83309712|ref|YP_419976.1| flagellar protein FhlB cytoplasmic domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82944553|dbj|BAE49417.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Magnetospirillum magneticum AMB-1] Length = 117 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P + A G+ +A+++ ++A+ H + + +P LA L V +++ IP + AVA+++ Sbjct: 41 PTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTVIPVEAFVAVAEILAY 99 Query: 349 IY 350 +Y Sbjct: 100 VY 101 >gi|23016629|ref|ZP_00056383.1| COG2257: Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Magnetospirillum magnetotacticum MS-1] Length = 117 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P + A G+ +A+++ ++A+ H + + +P LA L V +++ IP + AVA+++ Sbjct: 41 PTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTVIPVEAFVAVAEILAY 99 Query: 349 IY 350 +Y Sbjct: 100 VY 101 >gi|88800022|ref|ZP_01115593.1| FlhB domain protein [Reinekea sp. MED297] gi|88777300|gb|EAR08504.1| FlhB domain protein [Reinekea sp. MED297] Length = 112 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A L+Y P++ A G+N A++M ++A +P++E+ LA ++ Q+ + Sbjct: 6 TTRAATLKY--KGRKTPIISALGKNEQAEEMIQLAKACGVPVYEDEDLA-AILSQLDVGQ 62 Query: 333 AIPPVFYKAVAQLI 346 AIP Y+ VA ++ Sbjct: 63 AIPAELYEWVASVL 76 >gi|256024635|ref|ZP_05438500.1| surface presentation of antigens protein SpaS [Escherichia sp. 4_1_40B] Length = 130 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60 Query: 318 PSLARSLF 325 LAR ++ Sbjct: 61 KKLARKIY 68 >gi|309703218|emb|CBJ02553.1| type III secretion system protein [Escherichia coli ETEC H10407] Length = 130 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60 Query: 318 PSLARSLF 325 LAR ++ Sbjct: 61 KKLARKIY 68 >gi|315185654|gb|EFU19422.1| type III secretion exporter [Spirochaeta thermophila DSM 6578] Length = 104 Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y E AP ++AKG+ A + ++A EH IPI E +AR + + IP Sbjct: 16 AVAMKY-TPELPAPFVIAKGRGKTADLILELAREHRIPIVEH-RIAREGYDLFLPGTYIP 73 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA + +Y Sbjct: 74 EDLYEVVATIFAFVY 88 >gi|168182211|ref|ZP_02616875.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237793498|ref|YP_002861050.1| hypothetical protein CLJ_B0225 [Clostridium botulinum Ba4 str. 657] gi|182674642|gb|EDT86603.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229261705|gb|ACQ52738.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 86 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N A AL+Y ++ +PV+ G +A K+ + A E +PI + LA +L + I Sbjct: 2 NERKKAAALKYEESYT-SPVVTVAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDI 59 Query: 331 NSAIPPVFYKAVAQLI 346 +IP Y AVA++I Sbjct: 60 GDSIPYELYDAVAKVI 75 >gi|160901650|ref|YP_001567231.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95] gi|160359294|gb|ABX30908.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95] Length = 87 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY Q + AP +VAKG + IA+++ +IA E NIPI + A F + ++ IP Sbjct: 7 AVALRYKQGTDQAPKVVAKGIDSIARRIIEIAEEENIPIVKSEK-AVEEFYGLDLDEEIP 65 Query: 336 PVFYKAVAQLI 346 P Y+ A++I Sbjct: 66 PELYELAAEII 76 >gi|296283248|ref|ZP_06861246.1| flagellar biosynthetic protein FlhB [Citromicrobium bathyomarinum JL354] Length = 66 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IA +++IPI E+P LAR+L ++ IP Y AVA++I Sbjct: 15 IAKDNDIPIIEKPPLARALHASAKLDQPIPAEHYLAVAEII 55 >gi|85712296|ref|ZP_01043347.1| Uncharacterized conserved protein, related to C-terminal FlhB domain [Idiomarina baltica OS145] gi|85693923|gb|EAQ31870.1| Uncharacterized conserved protein, related to C-terminal FlhB domain [Idiomarina baltica OS145] Length = 91 Score = 37.4 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP ++AKG + +A+++ ++A H + + E+P L+ SL ++ + IP Y +A+LI Sbjct: 18 NAPQVIAKGFDELAEEIIEVAKAHGVMVHEDPMLSDSL-ARLNVGEEIPRELYVLIAELI 76 >gi|114563973|ref|YP_751487.1| FlhB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335266|gb|ABI72648.1| FlhB domain protein [Shewanella frigidimarina NCIMB 400] Length = 104 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP + A G++L+A++M IA E I I ++P L+ L + + + +P Y +A+LI Sbjct: 22 APKITATGKDLVAEEMILIAKEAGIHIHQDPHLSEFL-QLLELGDEVPKELYLLIAELIA 80 Query: 348 KIY 350 +Y Sbjct: 81 FVY 83 >gi|229916629|ref|YP_002885275.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp. AT1b] gi|229468058|gb|ACQ69830.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp. AT1b] Length = 96 Score = 37.0 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315 ++ M+ T R T A +RY +T + APV+VA+G +A+K+ + A + + Sbjct: 2 YQRMDLTKRKT---------AAVVRYDETTDKAPVVVARGTGAVAEKILQEARARGVAVE 52 Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + SL L + + AIPP Y +A+++ I Sbjct: 53 NDHSLLGHL-LDLDLGDAIPPQLYDVMAEVLLLI 85 >gi|167949063|ref|ZP_02536137.1| flagellar biosynthesis protein FlhB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 67 Score = 37.0 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 26/42 (61%) Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +PI E P LAR+++ +N +IP Y AVA+L+ ++ K Sbjct: 1 MPIIESPMLARAIYFSTELNESIPAGLYLAVAKLLAYVFQLK 42 >gi|256019343|ref|ZP_05433208.1| surface presentation of antigens protein SpaS [Shigella sp. D9] Length = 130 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I+NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60 Query: 318 PSLARSLF 325 LAR + Sbjct: 61 KKLARKNY 68 >gi|300820657|ref|ZP_07100808.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7] gi|309793918|ref|ZP_07688343.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7] gi|300526921|gb|EFK47990.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7] gi|308122325|gb|EFO59587.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7] Length = 55 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 13/61 (21%) Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 ++++I FIA Y + +KM KQE+K E K+ GNP IK+++ R RI Sbjct: 2 IIVLIFDFIA---------EYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR----RERI 48 Query: 255 R 255 R Sbjct: 49 R 49 >gi|254785931|ref|YP_003073360.1| FlhB domain-containing protein [Teredinibacter turnerae T7901] gi|237687521|gb|ACR14785.1| FlhB domain protein [Teredinibacter turnerae T7901] Length = 95 Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP + AKG A+++ +IA E +P+ + L L Q+ + +IP Sbjct: 9 AVALFY--DGESAPTITAKGSGEQAEEILRIAREAEVPLCDNGPLVE-LLSQLELGDSIP 65 Query: 336 PVFYKAVAQLIYKIYH 351 Y AVA +I Y Sbjct: 66 KELYIAVAHIIAFAYQ 81 >gi|209920313|ref|YP_002294397.1| putative type III secretion protein [Escherichia coli SE11] gi|209913572|dbj|BAG78646.1| putative type III secretion protein [Escherichia coli SE11] Length = 130 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I+NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60 Query: 318 PSLARSLF 325 LAR + Sbjct: 61 KKLARKNY 68 >gi|307718745|ref|YP_003874277.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM 6192] gi|306532470|gb|ADN02004.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM 6192] Length = 104 Score = 36.6 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y E AP ++AKG+ A + +A EH IP+ E +AR + + +P Sbjct: 16 AVAMKY-TPELPAPFVIAKGRGKTADLILDLAREHRIPVVEH-RIAREGYDLFLPGTYVP 73 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA + +Y Sbjct: 74 EDLYEVVATIFAFVY 88 >gi|153956205|ref|YP_001396970.1| hypothetical protein CKL_3609 [Clostridium kluyveri DSM 555] gi|219856530|ref|YP_002473652.1| hypothetical protein CKR_3187 [Clostridium kluyveri NBRC 12016] gi|146349063|gb|EDK35599.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219570254|dbj|BAH08238.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 88 Score = 36.6 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y T +AP++ A G IA + A E N+PI + L +L V + +IP Sbjct: 7 AVALKYEPTY-EAPMVTAAGIGQIADNILNKARESNVPIVYDRELT-NLLSNVDVGDSIP 64 Query: 336 PVFYKAVAQLI 346 Y VA++I Sbjct: 65 VELYDVVAKVI 75 >gi|218709485|ref|YP_002417106.1| hypothetical protein VS_1494 [Vibrio splendidus LGP32] gi|218322504|emb|CAV18663.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 293 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 15/107 (14%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAP---ISREASLFSSI---LACLIYLLFFFSPGIY-- 56 D P N + + K +ED LN+ N IS + +S+ +A L Y PG Y Sbjct: 180 DEPTNNLDMDTIKWLEDTLNQRNCTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDE 239 Query: 57 ---SVTSDLHVLLASATQRKLEDI----SHIVFLLTHLSLSASRLVI 96 + T LL+ +RK + + S++V LLTHL S RLV+ Sbjct: 240 YMTAATQARERLLSETLRRKHKLLNFKRSYLVSLLTHLKRSKQRLVL 286 >gi|187918556|ref|YP_001884119.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH] gi|119861404|gb|AAX17199.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH] Length = 86 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-- 333 AL ++Y T+ AP ++AK + A +++++A + IPI E+ L+ SLF IN Sbjct: 7 ALLIKY-DTKFPAPFILAKARGEKALRIKELAKQEGIPIVEDKYLSESLF---LINEGDF 62 Query: 334 IPPVFYKAVAQLIYKIYHKK 353 I ++K VAQ++ +Y K Sbjct: 63 IDFKYFKVVAQILSVVYKLK 82 >gi|157961216|ref|YP_001501250.1| FlhB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846216|gb|ABV86715.1| FlhB domain protein [Shewanella pealeana ATCC 700345] Length = 102 Score = 36.2 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NP A+AL Y AP + AKG++ +A+++ +A + IPI ++ L +++ + Sbjct: 6 NPKK-AVALSY--QPGTAPKVSAKGEDRLAEEIIALAQQAGIPIHQDEYLC-DFLQRLEV 61 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 62 GDEIPSELYLLIAELIAFVY 81 >gi|170726000|ref|YP_001760026.1| FlhB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811347|gb|ACA85931.1| FlhB domain protein [Shewanella woodyi ATCC 51908] Length = 104 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL + N+AP + AKG LIA+++ +A E I I + L+ + + + + Sbjct: 9 TQQAVALGF--DGNNAPKVTAKGSGLIAEEIISVAKEAGIHIHKNADLS-NFLQNLELGD 65 Query: 333 AIPPVFYKAVAQLIYKIY 350 IP Y +A++I Y Sbjct: 66 EIPKELYLLIAEIIAFAY 83 >gi|1196944|gb|AAD15121.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 154 Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 45/89 (50%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +P Sbjct: 62 LQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAESPI 121 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +A V ++++L + + D+ Sbjct: 122 VAMGNALDLVGLCALLVVLGVIPMVGFDV 150 >gi|332305476|ref|YP_004433327.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172805|gb|AEE22059.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5] Length = 110 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 276 ALALRYIQTEN-DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL++ + +N +AP +VAKG +A ++ +A + + I E+P L+ L + + I Sbjct: 15 AVALKHNEGDNKNAPQVVAKGFGELADEIIALAKQSGVLIHEDPYLSEFL-ASLDLGQEI 73 Query: 335 PPVFYKAVAQLI 346 P Y +A+LI Sbjct: 74 PEELYHVIAELI 85 Searching..................................................done Results from round 2 >gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] gi|254040367|gb|ACT57163.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 354/354 (100%), Positives = 354/354 (100%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS Sbjct: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL Sbjct: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN Sbjct: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP Sbjct: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA Sbjct: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI Sbjct: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 >gi|168238548|ref|ZP_02663606.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734592|ref|YP_002114950.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204931016|ref|ZP_03221842.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710094|gb|ACF89315.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288673|gb|EDY28048.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320060|gb|EDZ05265.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616914|gb|EFY13822.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618152|gb|EFY15044.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625823|gb|EFY22642.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626275|gb|EFY23085.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632689|gb|EFY29434.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639033|gb|EFY35726.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640473|gb|EFY37126.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646018|gb|EFY42535.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649560|gb|EFY45992.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655468|gb|EFY51776.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660247|gb|EFY56485.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662928|gb|EFY59135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668113|gb|EFY64272.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674127|gb|EFY70221.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675519|gb|EFY71593.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683067|gb|EFY79083.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686761|gb|EFY82739.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195348|gb|EFZ80528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199240|gb|EFZ84335.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204035|gb|EFZ89050.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207496|gb|EFZ92444.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217480|gb|EGA02199.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221971|gb|EGA06361.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224718|gb|EGA08987.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231502|gb|EGA15615.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235944|gb|EGA20023.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240514|gb|EGA24557.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245406|gb|EGA29406.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250177|gb|EGA34069.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253625|gb|EGA37453.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255054|gb|EGA38842.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260286|gb|EGA43907.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266878|gb|EGA50364.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270708|gb|EGA54149.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 383 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L N+ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHNWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|307131618|ref|YP_003883634.1| flagellar biosynthesis protein flhB [Dickeya dadantii 3937] gi|306529147|gb|ADM99077.1| Flagellar biosynthesis protein flhB [Dickeya dadantii 3937] Length = 383 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+ KTEAP+ ++ E A EG P SRE + ++A L L S +T Sbjct: 1 MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSRELTSVLMLIAGLAILWGSGSGMAARLTD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D I+ + L A ++P L ++ + + ++ + + Sbjct: 60 MMAKGLI-FDHNFISDERLIISHVGSLIEQAVMALVPILFGLVLVALAAPVLLGGLIFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F +++ G+KR++S + L K+ +K ++VG I L N+ +ML +S Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTHVLAELFKAILKAVIVGCITFWFLKHNWNSMLHLVSEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + A ++L + + D+GW +L+MSKQEI+DE K+ G+P Sbjct: 179 LGSAIKDALNIAFLCCFWVILGLFPMVAFDVGWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG + IA Sbjct: 239 HVKGRVRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMHAPKVLAKGADQIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IPI E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIRELGSEHRIPILEAPPLARALYRHTEIGHHIPTGLYAAVAEVLSWVYQLK 351 >gi|16760863|ref|NP_456480.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141445|ref|NP_804787.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163285|ref|ZP_03348995.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426385|ref|ZP_03359135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583527|ref|ZP_03365353.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289824043|ref|ZP_06543641.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25322221|pir||AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503160|emb|CAD05665.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhi] gi|29137072|gb|AAO68636.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 383 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|16765256|ref|NP_460871.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161613526|ref|YP_001587491.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994220|ref|ZP_02575312.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234020|ref|ZP_02659078.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168462551|ref|ZP_02696482.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820742|ref|ZP_02832742.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445536|ref|YP_002041180.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472731|ref|ZP_03078715.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251527|ref|YP_002146107.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238912509|ref|ZP_04656346.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|729522|sp|P40727|FLHB_SALTY RecName: Full=Flagellar biosynthetic protein flhB gi|633115|dbj|BAA06902.1| flagellar protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420451|gb|AAL20830.1| putative part of export apparatus for flagellar proteins [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161362890|gb|ABX66658.1| hypothetical protein SPAB_01246 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404199|gb|ACF64421.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459095|gb|EDX47934.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634185|gb|EDX52537.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215230|gb|ACH52627.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205327877|gb|EDZ14641.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331965|gb|EDZ18729.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342676|gb|EDZ29440.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247084|emb|CBG24905.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993900|gb|ACY88785.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912908|dbj|BAJ36882.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085466|emb|CBY95247.1| Flagellar biosynthetic protein flhB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224557|gb|EFX49620.1| Flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332988807|gb|AEF07790.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 383 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|161502970|ref|YP_001570082.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864317|gb|ABX20940.1| hypothetical protein SARI_01032 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 383 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTE P+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEDPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L N+ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGSYLWHNWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PITAMGNALNLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYEENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|311279222|ref|YP_003941453.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1] gi|308748417|gb|ADO48169.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1] Length = 387 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 103/352 (29%), Positives = 190/352 (53%), Gaps = 1/352 (0%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 ++N ++KTEAP+ ++++ A EG P SRE + +L + L F + + Sbjct: 5 ADNSDSEDKTEAPTPQRLDKAREEGQIPRSRELTSLLILLVGVCVLWFGGESMARRLAAL 64 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L L + D + I+ + L A ++P + ++ I + ++ V + Sbjct: 65 LSSGL-HFDHSIVNDPNLILGQIILLIKQAMLALLPLITGVVVVAIVAPMMLGGLVFSPK 123 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + F +++ GIKR++S + +K+ +K +LVG + + ++ M+ IS +P Sbjct: 124 SLAFKFDKLNPLPGIKRLFSAQSAAELLKAILKSVLVGCVAGTYVWSHWPDMMRLISESP 183 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + + +A V +++ L + + D+ W H KL+MS+Q+I+DE KQ+ G+P Sbjct: 184 LAAMGNALNMVGLCAMLVALGVIPMVGFDVFWQIHSHIKKLRMSRQDIRDEFKQNEGDPH 243 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K R + + R+ R +MM +A +I+TNPTHY++AL+Y++ + AP +VAKG LIA Sbjct: 244 VKGRIRQMQRAAARRRMMGDVPKADVIVTNPTHYSVALQYVEGKMSAPKVVAKGAGLIAL 303 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P+ E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 304 RIREIGQEHRVPVLEAPPLARALYRHAEIGQQIPGTLYAAVAEVLAWVWQLK 355 >gi|218548562|ref|YP_002382353.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ATCC 35469] gi|218356103|emb|CAQ88720.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469] gi|324113614|gb|EGC07589.1| flagellar biosynthetic protein FlhB [Escherichia fergusonii B253] gi|325496979|gb|EGC94838.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ECD227] Length = 382 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 186/350 (53%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE + +L + + F + + L Sbjct: 2 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSMLILLVGVCVIWFGGESLARQLAAMLS 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + D + I+ + L A ++P + ++ + S ++ + + + Sbjct: 62 AGL-HFDHHLINDPNLILGQIILLIKQAMMALLPLITGVVLVALISPVLLGGLIFSGKSL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P F +++ GIKR++S +K+ +K LVG + L + M+ ++ +P + Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGCVAGFYLWHKWPEMMRLMAQSPIT 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K Sbjct: 181 AMGNALDLVGLCALLVVLGVIPMVGFDVFYQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP ++AKG L+A ++ Sbjct: 241 GRIRQMQRAAARRRMMNDVPQADVIVNNPTHYSVALQYDENKMSAPKVIAKGAGLVALRI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R+IA EH+IP E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 301 REIAAEHHIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|271500057|ref|YP_003333082.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586] gi|270343612|gb|ACZ76377.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586] Length = 383 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 183/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+ KTEAP+ ++ E A EG P S+E + ++A L L + S ++ Sbjct: 1 MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGSSMAGRLSD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D I+ + L A ++P L ++ +G+ ++ + + Sbjct: 60 MMAKGLI-FDHGFINDERLIISHVGTLLEQAVLALVPILFGLVLVALGAPILLGGLIFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F +++ G+KR++S L K+ +K ++VG I L N+ +ML +S Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTQVLAELFKAILKAVIVGLITFWFLRHNWNSMLHLVSEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A ++L + + D+ W +L+MSKQEI+DE K+ G+P Sbjct: 179 MGMAIKDALNIAFLCCFWVILGLFPMVGFDVAWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IKNR + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG + IA Sbjct: 239 HIKNRIRQQQRAMAQRRMMSDVPKADVIVTNPTHYAVALKYDEKKMSAPRVLAKGADRIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R++ E+ IPI E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 QRIRELGTENRIPILEAPPLARALYRHTEIGQQIPTGLYAAVAEVLSWVYQLK 351 >gi|62180491|ref|YP_216908.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583582|ref|YP_002637380.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128124|gb|AAX65827.1| putative part of export apparatus for flagellar proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468109|gb|ACN45939.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714967|gb|EFZ06538.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 383 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIRELGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|167552446|ref|ZP_02346199.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168241547|ref|ZP_02666479.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259807|ref|ZP_02681780.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451224|ref|YP_002045968.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200389783|ref|ZP_03216394.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207856565|ref|YP_002243216.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194409528|gb|ACF69747.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199602228|gb|EDZ00774.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322918|gb|EDZ10757.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339229|gb|EDZ25993.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350661|gb|EDZ37292.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708368|emb|CAR32672.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 383 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|323977935|gb|EGB73021.1| flagellar biosynthetic protein FlhB [Escherichia coli TW10509] Length = 382 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHNIINDPNLILGQIILLIREAMLGLLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMNDVPKADVIVNNPTHYSVALQYDEHKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|56413166|ref|YP_150241.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362092|ref|YP_002141729.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127423|gb|AAV76929.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093569|emb|CAR59032.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 383 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ I+ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 351 >gi|260598364|ref|YP_003210935.1| flagellar biosynthetic protein flhB [Cronobacter turicensis z3032] gi|260217541|emb|CBA31747.1| Flagellar biosynthetic protein flhB [Cronobacter turicensis z3032] Length = 392 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ + E A EG P SRE + +L + + S + + L Sbjct: 12 SDDSDDKTEAPTPHRREKAREEGQIPRSRELTSMLMLLVGVAVIWMGGSLLARQLAAMLS 71 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + D +V ++ L A ++P ++ ++ + + ++ + N V Sbjct: 72 HGL-HFDHSIINDPKLVVGQISFLIKQALVALVPLIMGVVIVALFAPMLLGGLLFNTKAV 130 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 ++++ GIKRI+S +L +K+ +K +LVG + L N+ M+ IS +P S Sbjct: 131 AFKPEKLNPLPGIKRIFSSQSLAELLKAVLKSVLVGIVTGCFLWYNWPDMMRLISESPIS 190 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + +A V I+I++ + + D+ W KL+MS+Q+I+DE K G+P +K Sbjct: 191 AMRNAMNLVALCCILIVMGLVPMVGFDVFWQIVSHTKKLRMSRQDIRDEFKNQEGDPHVK 250 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG L+A ++ Sbjct: 251 GRIRQQQREAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 310 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R+I EH IP+ E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 311 REIGNEHRIPMLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 360 >gi|198245714|ref|YP_002215169.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940230|gb|ACH77563.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 383 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 191/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y +++ AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|197265115|ref|ZP_03165189.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243370|gb|EDY25990.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 383 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESEDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|283832722|ref|ZP_06352463.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] gi|291072402|gb|EFE10511.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] Length = 383 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 188/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P S+E + +L + + + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ + + Sbjct: 60 MLSAGLR-FDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG++ L N+ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHNWPEMMRLVAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + + KL+MS+Q+I+DE KQS G+P Sbjct: 179 PITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHLKKLRMSRQDIRDEFKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MM +A +I+TNPTHY++AL+Y + + AP +VAKG +A Sbjct: 239 HVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGPVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|326622917|gb|EGE29262.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 383 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 191/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y +++ AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLSWVWQLK 351 >gi|301158434|emb|CBW17943.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323130198|gb|ADX17628.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 383 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVIDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|251789159|ref|YP_003003880.1| flagellar biosynthesis protein FlhB [Dickeya zeae Ech1591] gi|247537780|gb|ACT06401.1| flagellar biosynthetic protein FlhB [Dickeya zeae Ech1591] Length = 383 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+ KTEAP+ ++ E A EG P S+E + ++A L L + S +T Sbjct: 1 MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGSSMAGKLTD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D + + L A ++P L ++ + + ++ + + Sbjct: 60 MMAKGLI-FDHNLISDERLFISHVGALLKQAMLAIVPILFGLVLVALAAPVLLGGLIFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F +++ G+KR++S + L K+ +K ++VG I L N+ +ML +S Sbjct: 119 KAISFDFGKLNPLSGLKRMFSTHVLAELFKAILKAVIVGCITYWFLLHNWNSMLHLVSEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A +++ + + D+ W +L+MSKQEI+DE K+ G+P Sbjct: 179 MGIAIKDALNIAFLCCFWVIMGLFPMVAFDVAWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R+ + +MM +A +I+TNPTHYA+AL+Y + + +AP ++AKG + +A Sbjct: 239 HIKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMNAPKVLAKGADRVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R++ E+ +PI E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 QRIRELGAENRVPILEAPPLARALYRHTEIGQQIPAGLYAAVAEVLSWVYQLK 351 >gi|237731916|ref|ZP_04562397.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2] gi|226907455|gb|EEH93373.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2] Length = 383 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P S+E + +L + + + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ + + Sbjct: 60 MLSAGLR-FDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG++ L N+ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHNWPAMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + + KL+MS+Q+I+DE KQS G+P Sbjct: 179 PITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHVKKLRMSRQDIRDEFKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MM +A +I+TNPTHY++AL+Y + + AP +VAKG L+A Sbjct: 239 HVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALKYDENKMSAPKVVAKGAGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|157145338|ref|YP_001452657.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC BAA-895] gi|157082543|gb|ABV12221.1| hypothetical protein CKO_01078 [Citrobacter koseri ATCC BAA-895] Length = 383 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P S+E + +L + + + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQVPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ + + Sbjct: 60 MLSAGLR-FDHSMVNDPNLILGQIILLIKEAMIALLPLITGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG++ L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLSGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHHWPEMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+++I+DE K+S G+P Sbjct: 179 PVTAMGNALDLVGLCALLVVLGVIPMVAFDVVFQIFSHLKKLRMSRKDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG L+A Sbjct: 239 HIKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|261340264|ref|ZP_05968122.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] gi|288317353|gb|EFC56291.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] Length = 382 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ D+KTEAP+ ++E A EG P SRE + ++ + + + + Sbjct: 1 MAEDN--DDKTEAPTPHRLEKAREEGQVPRSRELTSLLILVVGVCIIWWGGESFARRLAG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L +A ++P + ++ + S ++ V + Sbjct: 59 MLSAGLR-FDHSMVNDPNLILSQIILLVKNAMIALLPLISGVVLVALVSPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GI +++S +K+ +K L+G+ L ++ M+ IS + Sbjct: 118 KSLQPKFSKLNPLPGIAKMFSAQTGAELVKAILKSALMGSTAGFFLWHHWPEMMRLISES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L I + D+ + + + KL+MS+Q+I+DE KQ G+P Sbjct: 178 PFNAMNNAMNLVGLCALLVVLSIIPMVGFDVIFQMYSHFKKLRMSRQDIRDEYKQMEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MME +A +I+TNPTHY++ALRY + + AP +VAKG LIA Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGAGLIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+ +PI E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|296101781|ref|YP_003611927.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056240|gb|ADF60978.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 382 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + D+KTEAP+ ++E A EG P SRE + ++ + + + + Sbjct: 1 MAEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILIVGVCIIWWGGESLARKLAG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGLR-FDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVALISPVMLGGLVFST 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GI +++S +K+ +K L+G+ L N+ M+ IS + Sbjct: 118 KSLQPKFSKLNPLSGIAKMFSAQTGAELLKAILKAALMGSAAGFYLWHNWPEMMRLISES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L I + D+ + + + KL+MS+Q+I+DE KQ G+P Sbjct: 178 PLTAMSNALNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQMEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+ +PI E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|146312093|ref|YP_001177167.1| flagellar biosynthesis protein FlhB [Enterobacter sp. 638] gi|145318969|gb|ABP61116.1| flagellar biosynthetic protein FlhB [Enterobacter sp. 638] Length = 382 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 188/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D D+KTEAP+ +++ A +G P SRE + ++ + + F + Sbjct: 1 MA--DDSDDKTEAPTPHRLDKAREDGQVPRSRELTSLLILIVGVCIIWFGGGAFANRLAG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 59 MLSAGLR-FDHSIVNDQNLILSQIILLIKNAMIALLPLISGVVLVALVSPIMLGGLIFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GI +++S +K+ +K L+G+ L ++ M+ +S + Sbjct: 118 KSLQPKFSKLNPFPGIAKMFSAQTGAELLKAILKSTLMGSTAGFYLWHHWPDMMRLLSES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L I + D+ + + KL+MS+Q+++DE KQ G+P Sbjct: 178 PLTAMRNAMDLVGFCAVLVVLSIIPMVGFDVFFQIYSHIKKLRMSRQDLRDEYKQMEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALKYDENKMSAPKVVAKGAGLIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+ +P+ E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGSENRVPVLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|212634380|ref|YP_002310905.1| flagellar biosynthesis protein FlhB [Shewanella piezotolerans WP3] gi|212555864|gb|ACJ28318.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3] Length = 377 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE +S+K++ A ++G S++ + ++A + L+ P I Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLVMT-GPSIAKAMH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + T+ ++ D ++ + + + + ++ +LL + + + Sbjct: 60 TIMTNLFTLTRDEIFDTRQMMNIWSMVGSELAAPLLGFILLLAVIAFAGNVALGGMSFSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S G+KR++ + +V K K +V + L +L + Sbjct: 120 KACMPKPSKMSPVAGLKRMFGVQAVVELTKGIAKFSVVAITAYVVLKIYLNDILMLSQDH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +YHA V + I++ + +D+ + +LKM+KQE+KDE K + G P Sbjct: 180 LPGNIYHALDLVSWIFILLCASTFIIVAIDVPYQIWHHAKQLKMTKQEVKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + + +MM A +I+ NP HYA+A++Y ++ AP +VAKG + +A Sbjct: 240 EVKGRIRQLQQEMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAAKSTAPFVVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ + Sbjct: 300 FKIREIAREHDVAIVTAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352 >gi|50120630|ref|YP_049797.1| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum SCRI1043] gi|49611156|emb|CAG74602.1| flagellar biosynthetic protein [Pectobacterium atrosepticum SCRI1043] Length = 383 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTEAP+ +K E A EG P SRE + ++A L L + Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWIGGDVMAGRLAR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + D + ++ + L A ++P +L ++ + + ++ + + Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAVSALVPIMLGAVLVALSAPMLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S L K+ +K ++VG I T+ L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSSQALAELFKAILKSVIVGIISTLFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A +I++ + + D+ W KL+M+KQEI+DE KQS G+P Sbjct: 179 PIAALGDALELAVMCGFLIIIGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351 >gi|253688980|ref|YP_003018170.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755558|gb|ACT13634.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 383 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+ KTEAP+ +K E A EG P SRE + ++A L L + Sbjct: 1 MAD-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWIGGDAMAGRLAR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + D + ++ + L A+ +IP + ++ + + L+ + + Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAASALIPIMFGAVLVALSAPLLLGGVLFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L IS + Sbjct: 119 KSLKVNFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLISES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P S L A +I++ + + D+ W KL+MSKQEI+DE KQS G+P Sbjct: 179 PISALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ I IP Y AVA+++ +Y K Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEIGEHIPAALYAAVAEVLAWVYQLK 351 >gi|157376185|ref|YP_001474785.1| flagellar biosynthesis protein FlhB [Shewanella sediminis HAW-EB3] gi|157318559|gb|ABV37657.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3] Length = 377 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 167/353 (47%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + ++ E + +G S+E + ++A + P I Sbjct: 1 MAENDSSQEKTEEATPRRREQSREKGQVARSKELGTSAVLMAAAVGFAMT-GPSIAKALY 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ +L + + ++ D + + + + + ++ + + + ++ + Sbjct: 60 NIMEMLFTLDRTQIFDTNALFLIWPVIGQQLAFPMLSFIAILTLMAFLGNIVLGGITFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ + LV K K +V L+ + +L + Sbjct: 120 KAFMPKTDKMNPINGFKRMFGVQALVELTKGIAKFSVVALSAYFLLSYYFNDILALSRDH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +YHA + + I++ + V+D+ + +LKM+KQEIKDE K + G P Sbjct: 180 LPGNVYHALDLLIWMFIILCSSTIIIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A Sbjct: 240 EVKGKVRQMQREMAQRRMMGEVPNADVIVVNPDHYAVAVKYDAMKATAPFVLAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH I I P LAR+++ I+ IP + AVAQ++ ++ + Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352 >gi|227112512|ref|ZP_03826168.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 383 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTEAP+ +K E A EG P SRE + ++A L L + Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWMGGEAMAGRLAR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + D + ++ + L A +IP LL ++ + + L+ + + Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAVSALIPILLGAVLVALSAPLLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S +L K+ +K ++VG I T L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTFFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + A +I++ + + D+ W KL+MSKQEI+DE KQ+ G+P Sbjct: 179 PITAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQNEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351 >gi|293395574|ref|ZP_06639857.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582] gi|291421893|gb|EFE95139.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582] Length = 391 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+EAP+ ++E A EG P SRE + ++A L L S + L Sbjct: 11 EDSDLEKSEAPTPHRVEKAREEGQIPRSRELTSILMLIAGLAILWVGGSNLARQLAQMLT 70 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + + ++ L L A ++P + ++ + + ++ + + + Sbjct: 71 DGL-HFDHGMVNNDRQMLHQLGMLLRQAVWALLPVMAGLVLVALTAPMLLGGILFSGKSL 129 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K KR++ G+KRI+S L +K +K +LVG + + L N+ ML ++ P Sbjct: 130 KFDLKRLNPLSGLKRIFSSQVLAELLKGVLKALLVGWVTGLFLWHNWAAMLHLVTQQPLD 189 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L +A V ++++L + + D+ + KLKM+KQ+I+DE K+ G+P +K Sbjct: 190 ALANALQMVVFCGLLVVLGLVPMVAFDVFYQLWSHIKKLKMTKQDIRDEFKEQEGDPHVK 249 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + ++ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA ++ Sbjct: 250 GRIRQQQQAIARRRMMSDVPKADVIVTNPTHYAVALQYNDKQMSAPRVLAKGAGEIALRI 309 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A +H IP E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 310 RELAAQHRIPTLEAPPLARALYRHSEIGQHIPTTLYAAVAEVLAWVYQLR 359 >gi|302878260|ref|YP_003846824.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans ES-2] gi|302581049|gb|ADL55060.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans ES-2] Length = 379 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 186/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE PS ++++ A +G S E S FS +LA L F + + Sbjct: 1 MAE-DSDLEKTEQPSQRRLDQAKEKGQVARSTELSTFSILLAGGATLWFMGASLNAHMVR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L Q + ++ L LS+ P LL+ ++ +G+ LI + + Sbjct: 60 LLHDALI-FNQDVVFKPELMIPRLYDLSMDMLITFAPVLLMMLITALGAPLILNGWLFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ GI RI S N+LV +K+ K +VG + T + + ++ S + Sbjct: 119 EALVPQFSRMNPITGIGRIISTNSLVELVKALGKATIVGGVATWVIWHHRDDVIQLASLS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + V + I+ + + +D+ + KL M+K+EI+ E K++ GNP Sbjct: 179 VTTAISQTGYLVCGSFLAIVSGMLLIVAIDVPFQLWSHNKKLMMTKEEIRQESKETDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+ R R +MM A A +++TNPTHY++AL+Y APV+VAKG +LIA Sbjct: 239 EVKGRIRSMQREAARRRMMSAIPTADVVVTNPTHYSVALKYSDKGMSAPVVVAKGSHLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA E+N+PI E P LAR+L K I AIP Y AVA+++ +Y K Sbjct: 299 HRIREIAQENNVPILEAPPLARALHKHTEIGDAIPEALYTAVAEVLAYVYQLK 351 >gi|78485088|ref|YP_391013.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena XCL-2] gi|78363374|gb|ABB41339.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena XCL-2] Length = 381 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ K+E PS KK+ +A +G P S+E + L ++L FF + + Sbjct: 1 MAENEDGTEKSEEPSEKKLREAREKGQVPRSKELTTLLMTLGAAVFLYFFGAQMMQDF-E 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + S + D L+ L + + +++P LLL ++ + S ++ + Sbjct: 60 TLFIKGLSFDRSHAYDFQMATNLVLGLVVHSIYMMVPFLLLMVLIAVVSPMLLGGWNFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIK+++S+N L+ K+F K LV + L +Y ++ Sbjct: 120 QALAPKISKLNPVSGIKKMFSMNALMELFKAFAKFTLVSVVAGFFLWYSYEEIISIGIEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L HA + + I + L + + +D+ + HQ ++LKM+KQE+K+E KQ G+P Sbjct: 180 PKQALAHAGQLIVEAFIFVSLSLILIAAIDVPFQIHQHVTQLKMTKQEVKEEHKQQEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM+ A ++ITNPTH+A+AL+Y E P+++A G + +A Sbjct: 240 EVKGRIRQLQREMSQKRMMQKVPEADVVITNPTHFAVALKYAPDEMAEPMVLALGSDFMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A EHNIP+ E P LAR+L+ ++ IP ++AVA ++ +Y + Sbjct: 300 AQIRTLAKEHNIPLIEAPPLARALYYNAEVDRPIPYELFRAVAAILAYVYQLR 352 >gi|227328329|ref|ZP_03832353.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 383 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 188/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTEAP+ +K E A EG P SRE + ++A L L + Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWMGGDAMAGRLAR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + D + ++ + L A+ +IP +L ++ + + L+ + + Sbjct: 60 IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAASALIPIMLGAVLVALSAPLLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + A +I++ + + D+ W KL+MSKQEI+DE KQS G+P Sbjct: 179 PIAAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351 >gi|220934507|ref|YP_002513406.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7] gi|219995817|gb|ACL72419.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7] Length = 384 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 177/354 (50%), Gaps = 2/354 (0%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E +D+ K+E P+ K++ +A +G SRE + +LA +L + + Sbjct: 1 MAENDDSSQEKSEQPTPKRLREAREKGQVARSRELNTTLVLLAGAGAMLVLGGGMLSRIQ 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + + D S + +L + +++P + ++ + + + Sbjct: 61 EMVRGSFV-LEREAIFDASTMQAMLILRISESLLMLLPLFGILLVAAVAGPIAMGGGGFS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P + +++ G+KRI+S L+ F K+ K L+ I L ++L Sbjct: 120 GKAMAPKWNKLNPIAGLKRIFSWQGLMEFGKTLAKFALITAIAGSLLWGLSDSLLGLGYQ 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + L A + V +++ + + ++D+ + +L+M+KQ++KDE K++ G Sbjct: 180 SLEQGLGRAAWIVGWTFLLLAASLILVALVDVPFQLWNHQKQLRMTKQQVKDEYKETEGK 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K+R + R +MM A +A +++TNPTHYA+ALRY Q + AP +VAKG +L+ Sbjct: 240 PEVKSRIRQTQMEIARRRMMAAVPKADVVVTNPTHYAVALRYDQNGSGAPKVVAKGADLV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R+ A E +P+F P LAR++F ++ IP Y AVAQ++ +Y K Sbjct: 300 AAEIRERAREAGVPLFPAPPLARAIFYSTRLDQEIPAGLYVAVAQVLAYVYQLK 353 >gi|294140216|ref|YP_003556194.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12] gi|293326685|dbj|BAJ01416.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12] Length = 377 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 171/353 (48%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + +++E A +G S+E + +++ + S+ + Sbjct: 1 MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGTSAVLVSAAVGFAMVGPSIAGSLVT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ D + +V + + + + + +LL + ++ + Sbjct: 61 IMTTLF-TMDREQVFDTNQMVLIWSMIGRELAFPMASLMLLIALVAFIGNIVLGGITFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ + LV K K ++V L+ + +L + Sbjct: 120 KAFMPKTDKMNPMAGFKRMFGVQALVELTKGIAKFLVVALSAYFLLSFFFDEILALSRDH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +YHA + + I++ + V+D+ + +LKM+KQE+KDE K + G P Sbjct: 180 LPGNVYHALDLLVWMFILLCSSTILIVVIDVPFQVWNHNKQLKMTKQEVKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AKG + +A Sbjct: 240 EVKGKIRQMQREIAQKRMMSEVPNADVIVVNPEHYAVAVKYDAMKSTAPYVLAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH I I P LAR+++ I+ IP + AVAQ++ ++ + Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352 >gi|170725986|ref|YP_001760012.1| flagellar biosynthesis protein FlhB [Shewanella woodyi ATCC 51908] gi|169811333|gb|ACA85917.1| flagellar biosynthetic protein FlhB [Shewanella woodyi ATCC 51908] Length = 377 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 170/353 (48%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + ++ E A +G S+E + +LA + + PGI + Sbjct: 1 MAENDSSQEKTEEATPRRREQAREKGQVARSKELGTSAVLLASAVGFV-MAGPGIAKALA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ D + + + + L + ++ + + ++ ++ Sbjct: 60 SIMTNLFTIDRAQVFDTNEMFLIWKFIGLELAFPILSLIAFLAVVSFIGNIVLGGITFSV 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S +G KR++ + LV K K +V L+ + +L + Sbjct: 120 KAFMPKPDKMSPVKGFKRMFGVQALVELTKGIAKFSVVALAAYFLLSFYFDDILALSREH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +YH+ + + I++ + V+D+ + +LKM+KQEIKDE K + G P Sbjct: 180 LPGNVYHSLDLLAWMFILLCSSTLLIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AKG + +A Sbjct: 240 EVKGKVRQMQREMAQRRMMSEVPNADVIVVNPEHYAVAVKYDVMKSTAPYVLAKGVDDVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH I I P LAR+++ I IP + AVAQ++ ++ + Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIEQEIPEGLFTAVAQVLAYVFQLR 352 >gi|269103165|ref|ZP_06155862.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163063|gb|EEZ41559.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp. damselae CIP 102761] Length = 376 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D +TE + ++ + A +G P SRE + + ++A + L++F ++ + Sbjct: 1 MADSDD-QERTEDATPRRRQQAQEKGQVPRSRELASVAVLIAGAVGLMWFGGSLGQALAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S T+ ++ D+ + +++ + + + L+ + + Sbjct: 60 VMSRLF-SLTREEVFDLGAMSTVISEVIWGIAAPLTLVLVFLFVAAFIGAAGLGGVRFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ + + V +KS +K+ LV + + ++ + Sbjct: 119 EAAMPKLSKMNPLSGFKRMFGMQSWVELIKSILKVGLVSGVAYYLMYDSLDDFFQLAQES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +YHA T+ +++I + + +D+ + +Q+ +LKM+KQEIKDE K++ G P Sbjct: 179 YPNNIYHALSTLLHFILLISCSLLVVVAIDVPFQIYQFNQQLKMTKQEIKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP HY++ALRY + APV++AKG + A Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIITNPEHYSVALRYDPKLDSAPVVIAKGVDHTA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNI I P LAR+++ + IP + AVAQ++ ++ K Sbjct: 299 FKIREIAKEHNIDIVPVPPLARAIYHTTELEQQIPDGLFIAVAQVLAYVFQLK 351 >gi|114562373|ref|YP_749886.1| flagellar biosynthesis protein FlhB [Shewanella frigidimarina NCIMB 400] gi|114333666|gb|ABI71048.1| flagellar biosynthetic protein FlhB [Shewanella frigidimarina NCIMB 400] Length = 377 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 172/353 (48%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D+ +TE P+SK++E + +G S+E + +LA + S+ + Sbjct: 1 MAESDSGQERTEDPTSKRLEQSREKGQVARSKELGTAAVLLAASVGFSMTGPAIAKSLYN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S + ++ D + + + + + +I + L ++ ++ Sbjct: 61 IMKQIF-SMERDQIFDTNSMFRVWGVVGSELAGPLISFIALLAFVSFLGNIVLGGMSFSV 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ LV K K +V L ++ +L S + Sbjct: 120 KAFMPKGSKLNPMNGFKRMFGTQALVELTKGIAKFSVVALSAYFLLKFYFYDILTLSSDH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +YHA + + I++ + + ++D+ + +LKM+KQE+KDE K + G P Sbjct: 180 LPGNVYHALDLLIWMFILLCSSMLLIVIIDVPFQIWNHKKQLKMTKQEVKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + + +MM A +I+ NP HYA+A++Y + + AP L+AKG + +A Sbjct: 240 EVKGRIRQMQQEMAQRRMMTEVPNADVIVVNPEHYAVAVKYDVSRSSAPFLIAKGVDDVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA EHN+ I P LAR+++ ++ +P + AVAQ++ ++ + Sbjct: 300 FRIREIAREHNVAIVSAPPLARAIYHTTKVDQQVPEGLFTAVAQVLAYVFQLR 352 >gi|283785619|ref|YP_003365484.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168] gi|282949073|emb|CBG88678.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168] Length = 382 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 186/353 (52%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + D+KTEAP+ ++E A EG P SRE + +L + + +++ Sbjct: 1 MSEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWIGGESLARRLSA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D S I+ + L A ++P + ++ + S ++ + + Sbjct: 59 MLSAGLR-FDHSMVNDPSLILGQIILLIKEAMIALLPLITGVVLVALISPVLLGGLIFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S + +K+ +K LVG + + L + M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQSGAELLKAVLKSTLVGGVTALYLWHKWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGDALDLVGLCALLVVLGVIPMVGFDVIFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM A +I+TNPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARQRMMSDVPNADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+ IP E P LAR+L++ I IP Y AVA+++ + K Sbjct: 298 LRIREIGAENKIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVLQLK 350 >gi|222084854|ref|YP_002543383.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] gi|221722302|gb|ACM25458.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] Length = 358 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 159/352 (45%), Positives = 238/352 (67%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D D+KTE P+ KK+ D + +GN P SREA++F+S+LA +IY+ FF + + Sbjct: 1 MADED-KDSKTEKPTEKKLRDTMEKGNVPHSREATIFASMLATVIYVTFFLPERMGRMGE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q KLE + L T + LV+P ++LF +FGIGS + Q +P L Sbjct: 60 VLRDLFEKPDQWKLETGPDALSLFTRIGWEVGNLVLPAIVLFFIFGIGSSMFQNLPTPVL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R+S G RI+S + LV F KS KI++V I+ L +F +D ++++ Sbjct: 120 DRIQPKFSRISPVSGWNRIFSTSGLVEFGKSLAKIVVVSIIMFFVLRGQFFHAIDSLASD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I V+++L+++LL A + + D+ WS H W+ +LKM+KQEIKDE KQS G+P Sbjct: 180 PQTIFVRLSTIVQRILMIVLLATAVVGIADVLWSRHHWFDQLKMTKQEIKDEFKQSQGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 240 IVKSRQRSVARDRARRRMIKQVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA + IP+FE+P LARS+F QV ++S IP VFYKAVA+LI++IY + Sbjct: 300 LKIREIAEANGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRIYAQ 351 >gi|157961202|ref|YP_001501236.1| flagellar biosynthesis protein FlhB [Shewanella pealeana ATCC 700345] gi|157846202|gb|ABV86701.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC 700345] Length = 377 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE +S+K++ A ++G S++ + ++A + LL P I Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLLMT-GPNIAQAMF 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + ++ ++ D + ++ + + + ++ ++ + + ++ Sbjct: 60 NIMNKMYTLSRDEIFDTNQMMNVWGVVGSELAFPLLGFIVFLALIAFAGNIALGGISFSV 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++S G KR++ + +V K K +V + L+ +L + Sbjct: 120 SAFMPKASKMSPVAGFKRMFGVQAVVELAKGIAKFSVVAITAYLLLSIYLNDILLLSQEH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +YHA + + I++ + ++D+ + +LKM+KQEIKDE K + G P Sbjct: 180 LPGNIYHALDLIVWIFILLCASTLLIVMIDVPFQIWNHAKQLKMTKQEIKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +I+ NP HYA+A++Y + AP +VAKG + +A Sbjct: 240 EVKGRIRQLQREMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAGRSTAPFVVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ + Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352 >gi|33601532|ref|NP_889092.1| flagellar biosynthesis protein FlhB [Bordetella bronchiseptica RB50] gi|33575968|emb|CAE33047.1| flagellar biosynthetic protein FlhB [Bordetella bronchiseptica RB50] Length = 384 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ K+EA S +++E A EG SRE F + A + + S +T Sbjct: 1 MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + +D +V H + A V+P + + + S ++ V + Sbjct: 60 VLRRGLGFEPRVA-QDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P+F ++SL GIKR++S +V +K+ K LVG + + + ML + Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A V +I+ + + +LD+ W KL+M+K++++ E K+S G+P Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTHYA+AL+Y E AP +VAKG LIA Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGEAGAPRVVAKGTGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ + Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351 >gi|78064847|ref|YP_367616.1| flagellar biosynthesis protein FlhB [Burkholderia sp. 383] gi|77965592|gb|ABB06972.1| Flagellar biosynthetic protein FlhB [Burkholderia sp. 383] Length = 398 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ +KTEA + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGGHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D + ++ SL ++P L L + + + + +++ Sbjct: 60 MLRGAF-TFDRATAFDTNRMLSAAGSASLEGFAALLPILALTGVAALLAPMALGGWLISS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGVALPDALHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|308048765|ref|YP_003912331.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] gi|307630955|gb|ADN75257.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] Length = 389 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ +TE + ++ E A +G P S+E + ++A +L ++ + Sbjct: 1 MAENDSSQERTEEATPRRREQAREKGQVPRSKELGTAAVLVAAAAGMLMMGGQIGEAMLT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 T+ ++ D+ I L + + V+ +L+ + G + + Sbjct: 61 VAKSQFE-LTRAEVFDLGEISELFSRILSELMVPVLGFVLVLFIAGFLGNIGLGGMSFSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S G KR++ + LV +KS K ++ + L+ N+ +L S N Sbjct: 120 QAAAPKASKMSPLAGFKRMFGLQALVELVKSIAKFAVIALVAWALLSVNFDQILQLSSGN 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + A + K+ +++ + + ++D + +LKM+KQE+KDE KQ+ G P Sbjct: 180 PEGAVRDALALLLKLFVLLCSSLLIIVIIDAPYQLWNHNKQLKMTKQEVKDEYKQTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MM +A +++ NPTHY++ALRY ++ N+AP++VAKG + IA Sbjct: 240 EVKGKIRQLQREMAQRRMMAEVPKADVVVVNPTHYSVALRYDKSINNAPLVVAKGTDEIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH +P+ P+LAR+++ ++S IP + AVAQ++ +Y K Sbjct: 300 LKIREIAREHEVPVVSSPALARAVYYSTKLDSPIPEGLFTAVAQILAYVYQLK 352 >gi|332284010|ref|YP_004415921.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7] gi|330427963|gb|AEC19297.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7] Length = 386 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE S +++E A EG SRE + F + A + L + +T Sbjct: 1 MAE-DSDLEKTEPASPRRLEKAREEGQVARSRELNTFLLLAAGVATLWLSGAGLYEGLTD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D +V L +L A ++P + + I + + +L+ Sbjct: 60 ILRAGLWFDLRVGR-DTDVMVALAATSALEAILTLLPLFGVLVAVAILASVALGGFLLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F+R++ +G+ R++S LV +K+ K ++G + + ++ M+ + A Sbjct: 119 KALEPKFERLNPLKGMGRMFSAQTLVELIKTLAKASVIGIVAVMVMSHYLDQMISLMHAT 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L V +I+ + + ++D W + Y K++MS++++K E K+S G+P Sbjct: 179 VSEALTRGIGLVALCCALIVGGLILIVLIDAPWQIYSHYKKMRMSREDVKQEHKESDGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +I+TNPTHYA+AL Y + AP +VAKG L+A Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPNADVIVTNPTHYAVALSYKDGQAGAPRVVAKGSGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH +P+ P LAR+L V + IP Y AVA+++ ++ + Sbjct: 299 ARIREVAQEHKVPMLSAPPLARALHHHVELGKEIPGDLYAAVAEVLAWVFQLR 351 >gi|317048539|ref|YP_004116187.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b] gi|316950156|gb|ADU69631.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b] Length = 384 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + ++KTE+P++ ++E A +G P SRE + +L+ ++ L + I + Sbjct: 1 MADESSDEDKTESPTAHRLEKARQDGQIPRSRELTSLLMMLSGIMIL-WLGGTSIARRLA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + D IV ++ L A V+P + ++ I + ++ V++ Sbjct: 60 SMVATGFRFDHGMVTDDKVIVAHISSLIGQAVLAVLPLMAGLVLVAIAAPMLLGGIVISG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ G+KR+ S +K+ +K +LVG + + ++ ML IS + Sbjct: 120 KSLSPDFTKLNPLSGLKRMVSGQTWAELLKAILKAVLVGLVAGWYIWSHWPEMLRLISES 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L H + ++++L + + D+ W + ++ KL+MS+Q+I+DE KQ G+P Sbjct: 180 PMNALEHGMDMIAICCVLVMLGLIPMVGFDVFWQLYSYFKKLRMSRQDIRDEFKQQEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + AP ++AKG +A Sbjct: 240 HVKGRIRQAMRAAARRRMMADVPKADVIVTNPTHYSVALQYNDKKMSAPKVIAKGAGEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++ EH +PI E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 300 LKIRELGKEHRVPILEAPPLARALYRHTEIGQFIPGALYAAVAEVLAWVWQLR 352 >gi|127512310|ref|YP_001093507.1| flagellar biosynthesis protein FlhB [Shewanella loihica PV-4] gi|126637605|gb|ABO23248.1| flagellar biosynthetic protein FlhB [Shewanella loihica PV-4] Length = 377 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ND KTE + ++ E A +G S+E + +++ + S+ S Sbjct: 1 MADNDTSQEKTEEATPRRREQAREKGQVARSKELGTSAVLMSAAVGFAVIGPSLGQSLMS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + +++++ D + + + + + + +L ++ + Sbjct: 61 VMTKLF-TMSRQEIYDTNSLFNIWMMVFKELAIPMASFVLFLAFIAFLGNVVLGGITFSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ + LV K K +V + + L+ + +L + Sbjct: 120 KAFMPKGNKMNPISGFKRMFGVQALVELTKGIAKFSVVALMAYLLLSYYFNDILTLSQGH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +Y+A + + I++ + V+D+ + +L+M+KQEIKDE K + G P Sbjct: 180 LPGNVYNALDLLVWMFIVLCSSTVIIVVIDVPFQIWNHNKQLRMTKQEIKDEYKDTEGQP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +I+ NP HYA+A++Y T+ AP ++AKG + +A Sbjct: 240 EVKGRVRQMQREMAQRRMMAEVPNADVIVVNPEHYAVAVKYDVTKAAAPYVLAKGVDDVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH++ I P LAR+++ I+ IP + AVAQ++ ++ + Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352 >gi|325291951|ref|YP_004277815.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3] gi|325059804|gb|ADY63495.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3] Length = 360 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 233/353 (66%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G + Sbjct: 1 MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q L + LL L S + L++P +++F++FG+ S Q +P L Sbjct: 61 TLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P + R+S +G RIYS V F KS KI++V I+ +SL ++++++D + ++ Sbjct: 121 ERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I +K++++IL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P Sbjct: 181 PQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 241 VVKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y K Sbjct: 301 LKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 353 >gi|33596133|ref|NP_883776.1| flagellar biosynthesis protein FlhB [Bordetella parapertussis 12822] gi|33573136|emb|CAE36781.1| flagellar biosynthetic protein FlhB [Bordetella parapertussis] Length = 384 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ K+EA S +++E A EG SRE F + A ++ + S +T Sbjct: 1 MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVVGVWLSGSMLYQGLTG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + +D +V H + A V+P + + + S ++ V + Sbjct: 60 VLRRGLGFEPRVA-QDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P+F ++SL GIKR++S +V +K+ K LVG + + + ML + Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A V +I+ + + +LD+ W KL+M+K++++ E K+S G+P Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTHYA+AL+Y AP +VAKG LIA Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ + Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351 >gi|261821144|ref|YP_003259250.1| flagellar biosynthesis protein FlhB [Pectobacterium wasabiae WPP163] gi|261605157|gb|ACX87643.1| flagellar biosynthetic protein FlhB [Pectobacterium wasabiae WPP163] Length = 383 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTEAP+ +K E A EG P SRE + ++A L L + Sbjct: 1 MAE-DSDLEKTEAPTPQKEEKAREEGQVPRSRELTSVLMMVAGLAILWMGGDAMAGRLAV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + D + ++ + L A+ +IP +L ++ + + ++ + + Sbjct: 60 IVAQSL-NFDYATIGDDTQMLRHVGSLLHQAASALIPIMLGSVLVALSAPMLLGGILFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K FK++ G+KR++S +L K+ +K ++VG I T+ L N+ +L +S Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGVISTLFLIHNWPKILHLVSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A +I++ + + D+ W KL+M+KQEI+DE KQS G+P Sbjct: 179 PIAALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ + +MM +A +I+TNPTHYA+ALRY + +AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ +H +PI E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGIDHRVPILEAPPLARALFRHSEVGEHIPAALYAAVAEVLAWVYQLK 351 >gi|218699549|ref|YP_002407178.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI39] gi|218369535|emb|CAR17304.1| flagellar export pore protein [Escherichia coli IAI39] Length = 382 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMLRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|163750537|ref|ZP_02157775.1| flagellar biosynthesis protein [Shewanella benthica KT99] gi|161329692|gb|EDQ00681.1| flagellar biosynthesis protein [Shewanella benthica KT99] Length = 377 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE + +++E A +G S+E + +++ + L S+ + Sbjct: 1 MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGTSAVLVSAAVGLAMVGPSIASSLVT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ D + +V + ++ + + +L + ++ + Sbjct: 61 IMTTLFTQ-DREQIFDTNQMVLVWGMIARELAFPMASLMLFIALVAFIGNILLGGITFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++++ +G+KR++ + LV K K ++V + L+ + +L + Sbjct: 120 KAFMPKTEKMNPMKGLKRMFGVQALVELTKGIAKFLVVASSAYFILSFFFNEILALSRDH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S +YHA + + I++ + V+D+ + +LKM+KQEIKDE K + G P Sbjct: 180 LPSNVYHALDLLVWMFILLCSSTILIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MM A +I+ NP HYA+A++Y ++ AP ++AKG + +A Sbjct: 240 EVKGKIRQMQREVAQRRMMAEVPSADVIVVNPEHYAVAVKYDAMKSTAPYVLAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH I I P LAR+++ I+ IP + A+AQ++ ++ + Sbjct: 300 FKIREIAREHEIAIISAPPLARAIYHTTKIDQEIPEGLFTAIAQVLAYVFQLR 352 >gi|73539437|ref|YP_299804.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha JMP134] gi|72122774|gb|AAZ64960.1| Flagellar biosynthetic protein FlhB [Ralstonia eutropha JMP134] Length = 380 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++ KTE S +++E A EG SRE + F ++ +I L S+ + Sbjct: 1 MSD-ESDLEKTEPASPRRLEKAREEGQVVRSRELATFIMLMTGVIGLWTLGGTIGRSLDT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L D S ++ ++ + +P LLLF + + + L+ + Sbjct: 60 VMRQSLR-FEPATAFDTSRMLSRFANVIWESLLAFMPLLLLFGVAAVAAPLLMGGWTFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F R+S G+ R++S++++ +K+ K +LVG++ + + ++A Sbjct: 119 KALMPNFGRMSPMSGLGRMFSVHSVAELVKAIAKSLLVGSVGAWVVWHRLPDAIALMNAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L H V + + ++L + + +D+ W + + + KL+MSK+E+K E K+S G+P Sbjct: 179 VQEALLHMLDMVLRCCVPVVLSLLLVAAIDVPWQFWEHFKKLRMSKEEVKQEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R+ R +MM+ +A +++TNPTH+A+ALRY + AP ++AKG + +A Sbjct: 239 HIKGRIRQQQRAMARRRMMQEVPKADVVVTNPTHFAVALRYEEGRMSAPRVIAKGTDEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH IP+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHRIPLMSAPPLARALHRHVDLGQEIPAGLYTAVAEVLAWVYQLK 351 >gi|167420299|ref|ZP_02312052.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166961994|gb|EDR58015.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 390 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K+E P++ K+E A +G P SRE + + A L L +++ Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + L ++P ++ + ++ + + Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|125973005|ref|YP_001036915.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC 27405] gi|256004802|ref|ZP_05429777.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM 2360] gi|281417216|ref|ZP_06248236.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20] gi|125713230|gb|ABN51722.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC 27405] gi|255991252|gb|EEU01359.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM 2360] gi|281408618|gb|EFB38876.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20] gi|316940759|gb|ADU74793.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM 1313] Length = 392 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 109/349 (31%), Positives = 178/349 (51%), Gaps = 1/349 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE + +K A EG SRE + +L+ + L F + L V Sbjct: 39 DNGEKTEKATPRKRSKAREEGQVLQSRELNSAIVLLSAFVTLRIFGQYMYEEILKCLKVA 98 Query: 66 LA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + L I + L ++ ++ P L++ ++ GIGS Q + + Sbjct: 99 ITVYPLNDGLFTIDGLFELYGETVITFLKIATPVLMVVLIAGIGSAYAQVGFLFTTKTLG 158 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 R++ +G KRI+S+ +LV +KS +KI LVG I + +L + + S Sbjct: 159 IKLSRINPLKGFKRIFSLKSLVELLKSIIKIALVGYIGYGYIKGEMTNVLGMMDVDVVSS 218 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 T+ I + + + V D G+ + ++ L+MSKQEIK+E K+ GNP IK+ Sbjct: 219 ASFLGSTILNAAIRMCIAFVVIGVADYGYQWWEYEKSLRMSKQEIKEENKEVEGNPEIKS 278 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + R +M++ +A ++ITNPTHYA+A++Y E DAPV+VAKGQ+ +A +++ Sbjct: 279 RIRQKQRQMSMRRMLQDIPKADVVITNPTHYAVAIKYDPKEADAPVVVAKGQDYMALRIK 338 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA EH + I E LA++L+K V I IPP Y+AVA+++ +Y K Sbjct: 339 EIAKEHKVEIVENKPLAQTLYKTVEIGGKIPPELYQAVAEVLAFVYSLK 387 >gi|15887910|ref|NP_353591.1| flagellar biosynthesis protein FlhB [Agrobacterium tumefaciens str. C58] gi|2459702|gb|AAB71778.1| FlhB [Agrobacterium tumefaciens] gi|15155504|gb|AAK86376.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58] Length = 360 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 154/350 (44%), Positives = 235/350 (67%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G + Sbjct: 1 MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPEGAGRLGV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q L + LL L S + L++P +++F++FG+ S +Q +P L Sbjct: 61 TLKDLFGQPEQWNLSTRPDALALLYFLGTSVAYLLMPAMIMFIVFGLASSFLQNLPSPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P + R+S +G RIYS V F KS KI++V I+ +L ++++++D + ++ Sbjct: 121 ERVRPQWSRISPAKGFTRIYSKQGFVEFAKSVFKIMIVSIIMFFALRGDFYSLIDLMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I V+K++++ILL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P Sbjct: 181 PQVIFVRVVEIVKKMMVVILLSTALLAAVDVLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+RQ+SIAR R R +M+ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 241 VVKSRQRSIARDRARRRMINNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA E+NIP+FE+P LARS+F QV ++S IPPVFYKAVA+L++++Y Sbjct: 301 LKIRQIAEENNIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELVHRVY 350 >gi|22126401|ref|NP_669824.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10] gi|45441419|ref|NP_992958.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108807160|ref|YP_651076.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua] gi|108812495|ref|YP_648262.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516] gi|145598622|ref|YP_001162698.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F] gi|149366261|ref|ZP_01888296.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125] gi|165925946|ref|ZP_02221778.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165938738|ref|ZP_02227293.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|166010865|ref|ZP_02231763.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166210428|ref|ZP_02236463.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|167401110|ref|ZP_02306613.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167425790|ref|ZP_02317543.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024657|ref|YP_001721162.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186895104|ref|YP_001872216.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis PB1/+] gi|218928912|ref|YP_002346787.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92] gi|229896231|ref|ZP_04511401.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A] gi|229897166|ref|ZP_04512322.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897892|ref|ZP_04513043.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. India 195] gi|229902876|ref|ZP_04517993.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516] gi|270486660|ref|ZP_06203734.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27] gi|294504041|ref|YP_003568103.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21959388|gb|AAM86075.1|AE013854_11 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45436280|gb|AAS61835.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108776143|gb|ABG18662.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516] gi|108779073|gb|ABG13131.1| flagellar biosynthetic protein FlhB [Yersinia pestis Antiqua] gi|115347523|emb|CAL20431.1| flagellar biosynthetic protein FlhB [Yersinia pestis CO92] gi|145210318|gb|ABP39725.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides F] gi|149292674|gb|EDM42748.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125] gi|165913352|gb|EDR31974.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|165922150|gb|EDR39327.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990209|gb|EDR42510.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166207608|gb|EDR52088.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|167049499|gb|EDR60907.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055189|gb|EDR64986.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751191|gb|ACA68709.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186698130|gb|ACC88759.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis PB1/+] gi|229680323|gb|EEO76422.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516] gi|229688933|gb|EEO80998.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. India 195] gi|229693503|gb|EEO83552.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701154|gb|EEO89183.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A] gi|262361772|gb|ACY58493.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262366091|gb|ACY62648.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|270335164|gb|EFA45941.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27] gi|294354500|gb|ADE64841.1| flagellar biosynthesis protein [Yersinia pestis Z176003] Length = 386 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K+E P++ K+E A +G P SRE + + A L L +++ Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + L ++P ++ + ++ + + Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|242238960|ref|YP_002987141.1| flagellar biosynthesis protein FlhB [Dickeya dadantii Ech703] gi|242131017|gb|ACS85319.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech703] Length = 383 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+ KTEAP+ + E A EG P SRE + ++ L L + Sbjct: 1 MAD-DSDLEKTEAPTPHRKEKAREEGQIPRSRELTSIMMLVVGLGILWMAGDIVARRLAL 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L T + D ++ + L ++P +L ++ I + ++ + + Sbjct: 60 LLSQGLF-FTHEMISDDKQMLKHMLGLLKLGGSALVPIILGTVVVAIAAPVMLGGLIFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ + +++ GIKR+ S L K+ +K ++VG I ++ L N+ +L +S Sbjct: 119 KQMEFNLNKLNPISGIKRLVSSQMLAELFKAILKAVVVGGITSLFLWHNWQDILRLVSEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + + +L+ + + D+ W KL+MSKQ+I+DE KQ+ G+P Sbjct: 179 LFSAVTDSLHFAIFCGFFVLIGLIPMVGFDVFWQIWSHLKKLRMSKQDIRDEFKQNEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ + +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA Sbjct: 239 HVKGRIRQLQRAMAQRRMMADVPKADVIVTNPTHYAVALQYNEQKMSAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++ EH IPI E P LAR+L+K I IP Y AVA+++ +Y K Sbjct: 299 LKIRELGNEHKIPILEAPPLARALYKHSEIGKNIPSTLYAAVAEVLVWVYQIK 351 >gi|114320141|ref|YP_741824.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii MLHE-1] gi|114226535|gb|ABI56334.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii MLHE-1] Length = 390 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 2/354 (0%) Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E + KTE P+ K+++DA +G P SRE + +L + +L F + Sbjct: 1 MAEESENGQEKTEQPTPKRLQDAKKKGQIPRSRELTTTLLMLFAALGMLMFGGYMGEGIV 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L + ++ D + + +V P + L M+ + + + Sbjct: 61 GLLEWSF-QPGREQIFDPKEPIARVHEALGRGLLIVAPFVGLMMLVALIGPVALGGWTFS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P ++++ +GIKRI+ L+ K KI++VG + + + A Sbjct: 120 AQPMIPKPEKMNPVKGIKRIFGPKALIELAKGIAKILVVGAVAGVFFYLFQDELRSLALA 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 S + HA ++ + + +D+ + KL+M++QE+KDE KQ+ G Sbjct: 180 PLQSAMAHAIELFFIAFFVLAASLIIVVAVDVPYQLWDHQKKLRMTRQEVKDEFKQTEGK 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K + + + R + +MME A +++TNPTHYA+AL+Y Q AP +VA G++ + Sbjct: 240 PEVKGKIRQLQREAAQRRMMEKVPEADVVVTNPTHYAVALQYDQLRMRAPRVVALGKDQV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R+IA EH IP+FE P LAR+L+ I+ IP Y AVAQ++ IY + Sbjct: 300 ALRIREIAGEHGIPLFEAPPLARALYHTTDIDQEIPAGLYMAVAQVLAYIYQLR 353 >gi|167623392|ref|YP_001673686.1| flagellar biosynthesis protein FlhB [Shewanella halifaxensis HAW-EB4] gi|167353414|gb|ABZ76027.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis HAW-EB4] Length = 377 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE +S+K++ A ++G S+E + ++A + LL P I Sbjct: 1 MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMT-GPDIAQAMH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L + ++ ++ D ++ + + + ++ ++ + + ++ Sbjct: 60 NIMTKLFTMSRDEIFDTKQMMNVWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSV 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S G KR++ + LV K K +V + L+ +L + Sbjct: 120 KAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITAFLLLSTYLNDILMLSQDH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +YHA V + I++ + V+D+ + +LKM+KQE+KDE K + G P Sbjct: 180 LPGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MM A +I+ NP HYA+A++Y T + AP +VAKG + +A Sbjct: 240 EVKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH++ I P LAR++F I+ IP + AVAQ++ ++ + Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIFHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352 >gi|167470753|ref|ZP_02335457.1| flagellar biosynthesis protein FlhB [Yersinia pestis FV-1] Length = 386 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K+E P++ K+E A +G P SRE + + A L L +++ Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + L ++P ++ + ++ + + Sbjct: 60 MVAQGL-HFGHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|33592472|ref|NP_880116.1| flagellar biosynthesis protein FlhB [Bordetella pertussis Tohama I] gi|33572118|emb|CAE41658.1| flagellar biosynthetic protein FlhB [Bordetella pertussis Tohama I] gi|332381889|gb|AEE66736.1| flagellar biosynthesis protein FlhB [Bordetella pertussis CS] Length = 384 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ K+EA S +++E A EG SRE F + A + + S +T Sbjct: 1 MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + +D +V H + A V+P + + + S ++ V + Sbjct: 60 VLRRGLGFEPRVA-QDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P+F ++SL GIKR++S +V +K+ K LVG + + + ML + Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A V +I+ + + +LD+ W KL+M+K++++ E K+ G+P Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTHYA+AL+Y AP +VAKG LIA Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ + Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351 >gi|153947600|ref|YP_001401303.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 31758] gi|152959095|gb|ABS46556.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP 31758] Length = 386 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K+E P++ K+E A +G P SRE + + A L L +++ Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + L ++P ++ + ++ + + Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + ++++L + + D+ + KL+M+KQ+I+DE K G+P Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLLPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|315286607|gb|EFU46040.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 110-3] Length = 400 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L Sbjct: 20 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 79 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + D + I+ + L A ++P + ++ I S ++ V + + Sbjct: 80 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 138 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + Sbjct: 139 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 198 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K Sbjct: 199 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 258 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++ Sbjct: 259 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 318 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 319 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 368 >gi|51596001|ref|YP_070192.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 32953] gi|51589283|emb|CAH20904.1| flagellar biosynthetic/export protein FlhB [Yersinia pseudotuberculosis IP 32953] Length = 386 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K+E P++ K+E A +G P SRE + + A L L +++ Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + L ++P ++ + ++ + + Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR+S G+KR++S L +K+ +K LVG + + L N+ M+ I+A Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A II+TNPTHYA+AL+Y +++ AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADIIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|85711029|ref|ZP_01042089.1| flagellar biosynthesis protein [Idiomarina baltica OS145] gi|85694942|gb|EAQ32880.1| flagellar biosynthesis protein [Idiomarina baltica OS145] Length = 375 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 174/354 (49%), Gaps = 3/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +TE P+ K+ +A +G S+E +++ + F+F +Y+ Sbjct: 1 MAETD--QERTEEPTEKRKREAREKGQIARSKEMGTAFVLVSAAVAF-FWFGESLYAGVR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + +R+ D S I L VI +F + Sbjct: 58 GLFRDLFTLERRQAFDTSQIYKALAVGFEHIIWPVIIIFAFITLFTFLGNSWLGGINFSW 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G KR++ LV +K K +V + L+ + +L Sbjct: 118 KAMAPKFSRMNPMNGFKRMFGTQALVELVKGIAKFGVVAISAFLLLSWQFDNILQISMGQ 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S++ +A + + ++I + + V+D + + L+M+KQEIKDE K S G+P Sbjct: 178 MPSMIENALDILMWMFLLICCSMFLIVVIDAPFQLWKHNKDLRMTKQEIKDEHKDSEGSP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + +MM+ +A +++TNPTH+A+A++Y ++ N AP+L+AKG + A Sbjct: 238 EVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHFAVAIKYEESGNQAPILLAKGTDETA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 K+R+IA E+++P+ P+LARS++ + + IP + AVAQ++ +Y K+ Sbjct: 298 AKIREIALEYDVPLVASPALARSIYHTTELETEIPRGLFVAVAQVLAYVYQLKM 351 >gi|45479286|gb|AAS66688.1| FlhB [Agrobacterium sp. H13-3] Length = 374 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 151/352 (42%), Positives = 232/352 (65%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +++ D+KTE P+ KK+ DA +GN P SRE +F+S LA YL+FF G + Sbjct: 16 ADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGVT 75 Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L L Q L + LL L S + L++P +++F++FG+ S Q +P L Sbjct: 76 LKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVLE 135 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 V+P + R+S +G RIYS V F KS KI++V I+ +SL ++++++D + ++P Sbjct: 136 RVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSDP 195 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 I +K++++IL A L +D+ W+ H W+S+LKM+K E+K+E KQS G+P+ Sbjct: 196 QVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDPV 255 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K RQ+S+AR R R +M++ RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA Sbjct: 256 VKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIAL 315 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y K Sbjct: 316 KIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 367 >gi|295678071|ref|YP_003606595.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002] gi|295437914|gb|ADG17084.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002] Length = 411 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 183/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+ + ++++ A EG SRE S F+ +LA Y ++ S I Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFYGVWGMSGNIGEHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + D + ++ ++P L + + + + + L+ Sbjct: 59 NMVRASLMFNHASVFDTNRMLIGAGTAGREGLYALVPVLGVTGLAALLAPMALGGWQLSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R++ EG R++SIN + S K ++VG I ++ + L + Sbjct: 119 KGLEPKFNRLNPIEGFGRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L ++ + M + + + LD+ + ++ KL+M+K+E+K E ++S G+P Sbjct: 179 LNVALANSMHLIAVCCGMTVAGMFAVAALDVPYQLWSYHKKLRMTKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIREIATENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQLR 351 >gi|83647843|ref|YP_436278.1| flagellar biosynthesis protein FlhB [Hahella chejuensis KCTC 2396] gi|83635886|gb|ABC31853.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis KCTC 2396] Length = 378 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END KTE P+ +KIE A EG P SRE + + +LA + LL F I Sbjct: 1 MAENDTSQEKTEEPTPRKIEKAREEGQIPRSRELNTTAVLLAGAVGLL-VFGTTIGKALE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T+ ++ D + L +L + ++P +L+ ++ + + +++ Sbjct: 60 GVFRASFTLTREEVFDAHQPMIHLGMAALDMAISLVPFMLVLLVASLLGPIALGGWMMSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F R++ EG+KR++S+ +L+ K K ++VG + I L + +L S + Sbjct: 120 KAAAPKFSRINPLEGLKRMFSLKSLMELFKGVAKTLVVGGVALIILNYSIPDLLAMGSED 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA + + + + + ++D+ + + L+M+ QEIKDE K + G P Sbjct: 180 TMVSMAHACSLLAWSFLFLASSMILIALVDVPFQIYDNQKNLRMTMQEIKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ +A ++ITNPTHY++AL+Y + AP+++AKG + +A Sbjct: 240 EVKRRVREVQYEMSRRRMLQDVPKADVVITNPTHYSVALKYDAKKMAAPIVLAKGADHMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H I + P L RS++ + IP Y AVAQ++ ++ + Sbjct: 300 MKIREIANAHKIELVSAPPLTRSIYHHTEVGEEIPSGLYLAVAQVLAYVFQLR 352 >gi|293446267|ref|ZP_06662689.1| flagellar biosynthetic protein FlhB [Escherichia coli B088] gi|291323097|gb|EFE62525.1| flagellar biosynthetic protein FlhB [Escherichia coli B088] Length = 396 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+ ++E A EG P SRE + +L + + F ++ L Sbjct: 16 SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 75 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + D + I+ + L A ++P + ++ + S ++ V + + Sbjct: 76 AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 134 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + Sbjct: 135 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 194 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K Sbjct: 195 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 254 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++ Sbjct: 255 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 314 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 315 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 364 >gi|331647476|ref|ZP_08348568.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] gi|330911689|gb|EGH40199.1| flagellar biosynthesis protein FlhB [Escherichia coli AA86] gi|331043200|gb|EGI15338.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] Length = 382 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|170683078|ref|YP_001743365.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5] gi|170520796|gb|ACB18974.1| flagellar biosynthetic protein FlhB [Escherichia coli SMS-3-5] Length = 382 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|218689877|ref|YP_002398089.1| flagellar biosynthesis protein FlhB [Escherichia coli ED1a] gi|218427441|emb|CAR08339.2| flagellar export pore protein [Escherichia coli ED1a] Length = 382 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|218705380|ref|YP_002412899.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026] gi|293405373|ref|ZP_06649365.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412] gi|298381016|ref|ZP_06990615.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302] gi|300899130|ref|ZP_07117412.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] gi|218432477|emb|CAR13370.1| flagellar export pore protein [Escherichia coli UMN026] gi|291427581|gb|EFF00608.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412] gi|298278458|gb|EFI19972.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302] gi|300357248|gb|EFJ73118.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] Length = 382 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|296157469|ref|ZP_06840304.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1] gi|295892241|gb|EFG72024.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1] Length = 406 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+ + ++++ A EG SRE S F+ +LA + ++ S I Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + ++ S ++P L + + + L+ Sbjct: 59 GMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMALGGWQLSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R++ G+ +++SIN + S VK ++VG I ++ +L + Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEILALATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P Sbjct: 179 LQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351 >gi|323968302|gb|EGB63709.1| flagellar biosynthetic protein FlhB [Escherichia coli M863] gi|327253009|gb|EGE64663.1| flagellar biosynthetic protein FlhB [Escherichia coli STEC_7v] Length = 382 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|187925774|ref|YP_001897416.1| flagellar biosynthesis protein FlhB [Burkholderia phytofirmans PsJN] gi|187716968|gb|ACD18192.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans PsJN] Length = 403 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+ + ++++ A EG SRE S F+ +LA + ++ S I Sbjct: 1 MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + ++ S ++P L + + + + L+ Sbjct: 59 GMLRAAFSFDHAGAFETRRMMIGAGVASREGLYALLPILAFTGVAALFAPMALGGWQLSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R++ G+ +++SIN + S K ++VG I ++ +L Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALAMQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L + + M + + + +D+ + Q++ KL+M+K+E+K E ++S G+P Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAAMDVPYQLWQFHKKLRMTKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351 >gi|300904767|ref|ZP_07122595.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1] gi|301306905|ref|ZP_07212951.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1] gi|300403281|gb|EFJ86819.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1] gi|300837880|gb|EFK65640.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1] gi|315257287|gb|EFU37255.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 85-1] Length = 382 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|324007265|gb|EGB76484.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 57-2] Length = 382 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|26248146|ref|NP_754186.1| flagellar biosynthesis protein FlhB [Escherichia coli CFT073] gi|91211104|ref|YP_541090.1| flagellar biosynthesis protein FlhB [Escherichia coli UTI89] gi|110641997|ref|YP_669727.1| flagellar biosynthesis protein FlhB [Escherichia coli 536] gi|117624031|ref|YP_852944.1| flagellar biosynthesis protein FlhB [Escherichia coli APEC O1] gi|191172970|ref|ZP_03034504.1| flagellar biosynthetic protein FlhB [Escherichia coli F11] gi|218558744|ref|YP_002391657.1| flagellar biosynthesis protein FlhB [Escherichia coli S88] gi|227885693|ref|ZP_04003498.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972] gi|237705835|ref|ZP_04536316.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA] gi|300994042|ref|ZP_07180661.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1] gi|301050765|ref|ZP_07197623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1] gi|306814291|ref|ZP_07448457.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] gi|26108550|gb|AAN80753.1|AE016762_6 Flagellar biosynthetic protein flhB [Escherichia coli CFT073] gi|91072678|gb|ABE07559.1| flagellar biosynthetic protein FlhB [Escherichia coli UTI89] gi|110343589|gb|ABG69826.1| flagellar biosynthetic protein FlhB [Escherichia coli 536] gi|115513155|gb|ABJ01230.1| flagellar biosynthesis protein B [Escherichia coli APEC O1] gi|190906681|gb|EDV66286.1| flagellar biosynthetic protein FlhB [Escherichia coli F11] gi|218365513|emb|CAR03240.1| flagellar export pore protein [Escherichia coli S88] gi|226900592|gb|EEH86851.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA] gi|227837266|gb|EEJ47732.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972] gi|294491560|gb|ADE90316.1| flagellar biosynthetic protein FlhB [Escherichia coli IHE3034] gi|300297582|gb|EFJ53967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1] gi|300406410|gb|EFJ89948.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1] gi|305852450|gb|EFM52901.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] gi|307553898|gb|ADN46673.1| flagellar biosynthetic protein FlhB [Escherichia coli ABU 83972] gi|307626638|gb|ADN70942.1| flagellar biosynthesis protein FlhB [Escherichia coli UM146] gi|315290307|gb|EFU49683.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 153-1] gi|323186760|gb|EFZ72080.1| flagellar biosynthetic protein FlhB [Escherichia coli RN587/1] gi|323952382|gb|EGB48255.1| flagellar biosynthetic protein FlhB [Escherichia coli H252] gi|324013524|gb|EGB82743.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 60-1] Length = 382 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|330445379|ref|ZP_08309031.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489570|dbj|GAA03528.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 376 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D +TE + +++E A +G P SRE + + +++ + L+ +F G+ Sbjct: 1 MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLM-WFGEGLSKALG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S T+ + D+ + ++ + + L+ + Sbjct: 59 QIMTAMFSLTREDIFDLDRLFVIIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F +++ GIKR++ + + V +KS +K+ LVG++ + + Sbjct: 119 QAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSSLEDFFQLSIEV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +HA + +++I + + +D+ + + +LKM+KQEIKDE K S G P Sbjct: 179 FPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A +HNI I LAR+++ + IP + AVAQ++ ++ K Sbjct: 299 LKIREVANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351 >gi|209522058|ref|ZP_03270713.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] gi|209497504|gb|EDZ97704.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] Length = 411 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ KTE+ + ++++ A EG SRE S F+ +LA Y ++ S I Sbjct: 1 MA-GDSDLEKTESATPRRLQKAREEGQVARSRELSTFA-LLAAGFYGVWGMSGSIGDHFQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + D S ++ S ++P L L + + + + +L+ Sbjct: 59 NMLRASLTFNHASTFDTSRMLIGAGAASREGLYALLPILALTGLAALLAPMALGGWLLST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R++ EG+ R++SIN + S K ++VG I ++ + L + Sbjct: 119 KALEPKFSRLNPIEGLSRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L ++ + M + + L LD+ + ++ KL+M+K+E+K E ++S G+P Sbjct: 179 LNLALANSVHLIAVCCGMTVAGMFVLAALDVPYQLWTFHKKLRMTKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQLR 351 >gi|323174603|gb|EFZ60224.1| flagellar biosynthetic protein FlhB [Escherichia coli LT-68] Length = 382 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGVENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|191168095|ref|ZP_03029894.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A] gi|309796010|ref|ZP_07690423.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7] gi|190901893|gb|EDV61643.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A] gi|308120460|gb|EFO57722.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7] Length = 382 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|16129832|ref|NP_416394.1| flagellin export apparatus, substrate specificity protein [Escherichia coli str. K-12 substr. MG1655] gi|89108720|ref|AP_002500.1| predicted flagellar export pore protein [Escherichia coli str. K-12 substr. W3110] gi|157156351|ref|YP_001463185.1| flagellar biosynthesis protein FlhB [Escherichia coli E24377A] gi|170081536|ref|YP_001730856.1| flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|193065459|ref|ZP_03046528.1| flagellar biosynthetic protein FlhB [Escherichia coli E22] gi|194429326|ref|ZP_03061852.1| flagellar biosynthetic protein FlhB [Escherichia coli B171] gi|209919306|ref|YP_002293390.1| flagellar biosynthesis protein FlhB [Escherichia coli SE11] gi|218554468|ref|YP_002387381.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI1] gi|238901095|ref|YP_002926891.1| putative flagellar export pore protein [Escherichia coli BW2952] gi|256017916|ref|ZP_05431781.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] gi|260844290|ref|YP_003222068.1| putative flagellar export pore protein FlhB [Escherichia coli O103:H2 str. 12009] gi|260855820|ref|YP_003229711.1| putative flagellar export pore protein FlhB [Escherichia coli O26:H11 str. 11368] gi|260868478|ref|YP_003234880.1| putative flagellar export pore protein FlhB [Escherichia coli O111:H- str. 11128] gi|293410191|ref|ZP_06653767.1| flagellar biosynthetic protein FlhB [Escherichia coli B354] gi|293415195|ref|ZP_06657838.1| flagellar biosynthetic protein FlhB [Escherichia coli B185] gi|300819864|ref|ZP_07100049.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|300924972|ref|ZP_07140897.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1] gi|300951503|ref|ZP_07165338.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1] gi|300956607|ref|ZP_07168886.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1] gi|301029330|ref|ZP_07192427.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1] gi|301327670|ref|ZP_07220877.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1] gi|307314208|ref|ZP_07593818.1| flagellar biosynthetic protein FlhB [Escherichia coli W] gi|331668576|ref|ZP_08369424.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|331673405|ref|ZP_08374173.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] gi|331677765|ref|ZP_08378440.1| flagellar biosynthetic protein FlhB [Escherichia coli H591] gi|332278948|ref|ZP_08391361.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] gi|2494574|sp|P76299|FLHB_ECOLI RecName: Full=Flagellar biosynthetic protein flhB gi|1736533|dbj|BAA15696.1| predicted flagellar export pore protein [Escherichia coli str. K12 substr. W3110] gi|1788188|gb|AAC74950.1| flagellin export apparatus, substrate specificity protein [Escherichia coli str. K-12 substr. MG1655] gi|157078381|gb|ABV18089.1| flagellar biosynthetic protein FlhB [Escherichia coli E24377A] gi|169889371|gb|ACB03078.1| predicted flagellar export pore protein [Escherichia coli str. K-12 substr. DH10B] gi|192926864|gb|EDV81489.1| flagellar biosynthetic protein FlhB [Escherichia coli E22] gi|194412633|gb|EDX28929.1| flagellar biosynthetic protein FlhB [Escherichia coli B171] gi|209912565|dbj|BAG77639.1| flagellar protein FlhB [Escherichia coli SE11] gi|218361236|emb|CAQ98820.1| flagellar export pore protein [Escherichia coli IAI1] gi|222033628|emb|CAP76369.1| flagellar biosynthetic protein flhB [Escherichia coli LF82] gi|238862415|gb|ACR64413.1| predicted flagellar export pore protein [Escherichia coli BW2952] gi|257754469|dbj|BAI25971.1| predicted flagellar export pore protein FlhB [Escherichia coli O26:H11 str. 11368] gi|257759437|dbj|BAI30934.1| predicted flagellar export pore protein FlhB [Escherichia coli O103:H2 str. 12009] gi|257764834|dbj|BAI36329.1| predicted flagellar export pore protein FlhB [Escherichia coli O111:H- str. 11128] gi|260448997|gb|ACX39419.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1] gi|284921799|emb|CBG34872.1| flagellar biosynthesis protein FlhB [Escherichia coli 042] gi|291432843|gb|EFF05822.1| flagellar biosynthetic protein FlhB [Escherichia coli B185] gi|291470659|gb|EFF13143.1| flagellar biosynthetic protein FlhB [Escherichia coli B354] gi|299877756|gb|EFI85967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1] gi|300316589|gb|EFJ66373.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1] gi|300418847|gb|EFK02158.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1] gi|300449253|gb|EFK12873.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1] gi|300527561|gb|EFK48623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|300845765|gb|EFK73525.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1] gi|306906177|gb|EFN36695.1| flagellar biosynthetic protein FlhB [Escherichia coli W] gi|312946479|gb|ADR27306.1| flagellar biosynthesis protein FlhB [Escherichia coli O83:H1 str. NRG 857C] gi|315061186|gb|ADT75513.1| predicted flagellar export pore protein [Escherichia coli W] gi|315136523|dbj|BAJ43682.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1] gi|323180678|gb|EFZ66223.1| flagellar biosynthetic protein FlhB [Escherichia coli 1180] gi|323186344|gb|EFZ71694.1| flagellar biosynthetic protein FlhB [Escherichia coli 1357] gi|323378237|gb|ADX50505.1| flagellar biosynthetic protein FlhB [Escherichia coli KO11] gi|323940452|gb|EGB36643.1| flagellar biosynthetic protein FlhB [Escherichia coli E482] gi|323948234|gb|EGB44222.1| flagellar biosynthetic protein FlhB [Escherichia coli H120] gi|324017961|gb|EGB87180.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 117-3] gi|324118940|gb|EGC12829.1| flagellar biosynthetic protein FlhB [Escherichia coli E1167] gi|331063770|gb|EGI35681.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|331069603|gb|EGI40990.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] gi|331074225|gb|EGI45545.1| flagellar biosynthetic protein FlhB [Escherichia coli H591] gi|332101300|gb|EGJ04646.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] Length = 382 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|303240269|ref|ZP_07326788.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus CD2] gi|302592179|gb|EFL61908.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus CD2] Length = 400 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 105/349 (30%), Positives = 185/349 (53%), Gaps = 1/349 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK E A EG SRE + +L I + + + ++ Sbjct: 46 DSGDKTEKATPKKREKAREEGQVLQSREMTAAIVLLCLFITVKIAGGYMYEQIYAYFKIV 105 Query: 66 LASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A ++ L + ++ L L L ++V P + ++ GI S Q + + Sbjct: 106 FADYSKLTDLFTVEGLIKLFIDLLLRFLKIVAPVFAVALITGIVSGYAQVGFLFTTKTLA 165 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F R++ G KRI+S+ ++ +KS +KI+++G I L + +L+ ++ + SI Sbjct: 166 FKFSRINPLSGFKRIFSLRSVTELVKSILKIVVIGYIGYSYLADEAKNILNTMNMDVISI 225 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + T V I + + + L VLD G+ + ++ LKMSKQEIK E K++ GNP +K Sbjct: 226 AAYICVTSINVAIRMCIAMLILGVLDYGYQWWEYEKSLKMSKQEIKQENKEAEGNPEVKA 285 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + + R +M++ +A ++ITNPTH+A+A++Y +DAP+++AKGQ+ IA +++ Sbjct: 286 KIRQKQRQIALRRMLQDIPKADVVITNPTHFAVAIKYDPKVSDAPIVIAKGQDYIALRIK 345 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA E+ + I E LAR+L+ V I IPP ++AVA+++ +Y K Sbjct: 346 EIAKENKVEIVENKPLARTLYASVDIGERIPPELFQAVAEVLAFVYSLK 394 >gi|331683387|ref|ZP_08383988.1| flagellar biosynthetic protein FlhB [Escherichia coli H299] gi|331079602|gb|EGI50799.1| flagellar biosynthetic protein FlhB [Escherichia coli H299] Length = 382 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLTRRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSILVGSVTGFYLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|91792697|ref|YP_562348.1| flagellar biosynthesis protein FlhB [Shewanella denitrificans OS217] gi|91714699|gb|ABE54625.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans OS217] Length = 377 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 171/353 (48%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE P+ +++E A +G S+E + +LA + + S+ Sbjct: 1 MAENDSSQEKTEEPTGRRLEQAREKGQIARSKELGTAAVLLASSVGFMMTGPALAKSLFR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +L + + ++ D + + + + + ++ + + + ++ ++ Sbjct: 61 IMEQIL-TMERAQIFDTNSMFRVWGVIGTELAIPLLSFIGMLAVVSFLGNIVLGGINFSV 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ LV K K +V L + +L + + Sbjct: 120 KAFMPKGSKMNPMSGFKRMFGTQALVELTKGIAKFSVVAFSAYFLLDFYFVDILQLSNDH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + YHA + + I++ + ++D+ + +LKM+KQEIKDE K + G P Sbjct: 180 LPNNAYHALDLLVWMFILLCSSTLLIVIIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGQP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+ NP HYA+A++Y + + AP +VAKG + +A Sbjct: 240 EVKARVRQMQREMAQKRMMAEVPKADVIVVNPEHYAVAVKYDASRSTAPFVVAKGIDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R IA EH++ I P LAR+++ ++ +P + AVAQ++ ++ + Sbjct: 300 FQIRAIAREHDVAIVSAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQLR 352 >gi|15802292|ref|NP_288317.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 EDL933] gi|12515942|gb|AAG56870.1|AE005410_6 putative part of export apparatus for flagellar proteins [Escherichia coli O157:H7 str. EDL933] Length = 382 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ V I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGXENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|315296540|gb|EFU55837.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 16-3] Length = 382 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|15831844|ref|NP_310617.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. Sakai] gi|168747910|ref|ZP_02772932.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4113] gi|168757917|ref|ZP_02782924.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4401] gi|168762323|ref|ZP_02787330.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4501] gi|168770866|ref|ZP_02795873.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4486] gi|168776570|ref|ZP_02801577.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4196] gi|168783183|ref|ZP_02808190.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4076] gi|168789748|ref|ZP_02814755.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC869] gi|168801881|ref|ZP_02826888.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC508] gi|195939584|ref|ZP_03084966.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. EC4024] gi|208810589|ref|ZP_03252465.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4206] gi|208816756|ref|ZP_03257876.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4045] gi|208821749|ref|ZP_03262069.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4042] gi|209400586|ref|YP_002270964.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4115] gi|217328966|ref|ZP_03445047.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. TW14588] gi|254793504|ref|YP_003078341.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. TW14359] gi|261227619|ref|ZP_05941900.1| predicted flagellar export pore protein [Escherichia coli O157:H7 str. FRIK2000] gi|261258215|ref|ZP_05950748.1| predicted flagellar export pore protein [Escherichia coli O157:H7 str. FRIK966] gi|13362058|dbj|BAB36013.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. Sakai] gi|187768084|gb|EDU31928.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4196] gi|188017418|gb|EDU55540.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4113] gi|188999430|gb|EDU68416.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4076] gi|189355171|gb|EDU73590.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4401] gi|189360277|gb|EDU78696.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4486] gi|189367382|gb|EDU85798.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4501] gi|189370698|gb|EDU89114.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC869] gi|189376036|gb|EDU94452.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC508] gi|208725105|gb|EDZ74812.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4206] gi|208731099|gb|EDZ79788.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4045] gi|208741872|gb|EDZ89554.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4042] gi|209161986|gb|ACI39419.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC4115] gi|209767300|gb|ACI81962.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|209767302|gb|ACI81963.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|209767306|gb|ACI81965.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|217318313|gb|EEC26740.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. TW14588] gi|254592904|gb|ACT72265.1| predicted flagellar export pore protein [Escherichia coli O157:H7 str. TW14359] gi|320188579|gb|EFW63241.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. EC1212] gi|326342258|gb|EGD66039.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. 1044] gi|326343808|gb|EGD67570.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. 1125] Length = 382 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ V I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|89075526|ref|ZP_01161937.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] gi|89048798|gb|EAR54369.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] Length = 376 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D +TE + +++E A +G P SRE + + +++ + L+ +F G+ S Sbjct: 1 MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLM-WFGEGLSKALS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + S T+ + D+ + ++ + + L+ + + Sbjct: 59 HIMMAMFSLTRDDIFDLDRLFVIILDAIVYILAPLFLVLIFLFVAAFIGAAGVGGVRFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LVG+I + N + Sbjct: 119 QAAMPKLSKINPLSGIKRMFGLQSWVELIKSILKVGLVGSIACYLIFSNLEDFFQLSNEV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +HA + +++I + + +D+ + + +LKM+KQEIKDE K S G P Sbjct: 179 FPANYFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +H+I I LAR+++ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIANKHDIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351 >gi|90579940|ref|ZP_01235748.1| flagellar biosynthesis protein [Vibrio angustum S14] gi|90438825|gb|EAS64008.1| flagellar biosynthesis protein [Vibrio angustum S14] Length = 376 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D +TE + +++E A +G P SRE + + +++ + L+ +F G+ S Sbjct: 1 MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLM-WFGEGLSKALS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S T+ + D+ + ++ + + L+ + + Sbjct: 59 HIMTAMFSLTRDDIFDLDRLFVIILDAIVYVLAPLFLVLIFLFVAAFIGAAGVGGVRFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LVG+I + + + Sbjct: 119 QAAMPKLSKMNPLSGIKRMFGMQSWVELIKSILKVGLVGSIACYLIFSSLEDFFQLSNEV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +HA + +++I + + +D+ + + +LKM+KQEIKDE K S G P Sbjct: 179 FPANYFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A ++ITNP H+++ALRY + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +HNI I LAR+++ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351 >gi|331653290|ref|ZP_08354295.1| flagellar biosynthetic protein FlhB [Escherichia coli M718] gi|331049388|gb|EGI21460.1| flagellar biosynthetic protein FlhB [Escherichia coli M718] Length = 382 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S+ +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSVQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGSENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|301018276|ref|ZP_07182787.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1] gi|331663378|ref|ZP_08364288.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143] gi|300399746|gb|EFJ83284.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1] gi|331059177|gb|EGI31154.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143] Length = 382 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + ++ + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILVVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|94312630|ref|YP_585839.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans CH34] gi|93356482|gb|ABF10570.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans CH34] Length = 380 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE +++++E A EG SRE F+ ++ +I L + + Sbjct: 1 MSE-ESDLEKTEPATARRLEKAREEGQVVRSRELGTFAMLMTGVIGLWATGGVLGRKLDA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +H LA D + ++ + A +P LL+F + + + L + + Sbjct: 60 VMHAGLA-FEPATAFDTNRMLSQFAAIVWDALLAFLPLLLMFGVAALVTPLALGGWMFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F R+S G+ R++S ++LV K+ K +LVG + + + + A Sbjct: 119 KSFSPDFSRMSPISGLGRLFSAHSLVELAKAIAKSLLVGGVGAWMIWRKLPEAIALMDAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L H V V ++ + + LD+ W + ++ KL+M+K+EIK E+K++ G+P Sbjct: 179 IQEALLHMMELVLYVSGVVAGSLILVAALDVPWQLYTFHKKLRMTKEEIKQEMKETDGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R+ R +MM +A +++TNPTHYA+ALRY + AP +VAKG + +A Sbjct: 239 HIKARIRQQQRAIARRRMMAEVPKADVVVTNPTHYAVALRYEEGRMGAPRVVAKGADEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHRVPMLSAPPLARALHRHVELGHEIPAGLYTAVAEVLAWVYQLK 351 >gi|320198575|gb|EFW73175.1| Flagellar biosynthesis protein FlhB [Escherichia coli EC4100B] Length = 382 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGLR-FDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|281178949|dbj|BAI55279.1| flagellar protein FlhB [Escherichia coli SE15] Length = 382 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR +S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRTFSAQTGAELLKAILKTILVGSVTGFFLWYHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|320194407|gb|EFW69038.1| Flagellar biosynthesis protein FlhB [Escherichia coli WV_060327] Length = 382 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARPLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|291278828|ref|YP_003495663.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans SSM1] gi|290753530|dbj|BAI79907.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans SSM1] Length = 359 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 195/353 (55%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M E + +TE + ++ + A EGN P SRE S L +I+L F+ I + + Sbjct: 1 MPEKNDA-ERTEEATPRRRQKAREEGNVPKSRELSTAIIFLISVIFLYFYTPILIDNFSK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+ S V L + +++ P L ++ G+ + Q +++ Sbjct: 60 LISHTLSKVGYTL--SKSATVELFNFVFQFYLKVLFPLFALLVVAGLLVNVAQFGFLISP 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P + R++ G++ ++S +LV +KS KI +VG + I + +L+ A+ Sbjct: 118 KALEPKWDRLNPINGLQNLFSKRSLVELIKSIFKIFVVGFVAYIIVRGKIGVILNLADAD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P S + V ++ I L I +++LD + Q+ LKM+KQE+K+E KQ G+P Sbjct: 178 PFSSMVFFGKLVFELCFKIGLLILLMSILDFFYQKWQYEQDLKMTKQEVKEEFKQMEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +I+ R +S+ R R +MME +A ++ITNPTHYA+A++Y ++ APV+VAKGQ L+A Sbjct: 238 LIRQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDINKDRAPVVVAKGQRLMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++IA E+ + I E+P LAR+L+ QV I IP YKA+A+++ +Y K Sbjct: 298 QKIKEIAKENGVFIHEDPPLARTLYSQVEIGDEIPENLYKAIAEILAIVYKMK 350 >gi|300917538|ref|ZP_07134195.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1] gi|300415243|gb|EFJ98553.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1] Length = 382 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|215487092|ref|YP_002329523.1| flagellar biosynthesis protein FlhB [Escherichia coli O127:H6 str. E2348/69] gi|312967082|ref|ZP_07781300.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75] gi|215265164|emb|CAS09552.1| predicted flagellar export pore protein FlhB [Escherichia coli O127:H6 str. E2348/69] gi|312288546|gb|EFR16448.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75] Length = 382 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQ G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQREGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|91785647|ref|YP_560853.1| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400] gi|91689601|gb|ABE32801.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400] Length = 406 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTE+ + ++++ A EG SRE S F+ +LA + ++ S I Sbjct: 1 MAE-ESDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + ++ S ++P L + + + L+ Sbjct: 59 GMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMALGGWQLSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R++ G+ +++SIN + S VK ++VG I ++ +L + Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEILALATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P Sbjct: 179 LQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351 >gi|194434131|ref|ZP_03066400.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012] gi|194417675|gb|EDX33775.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012] gi|332095083|gb|EGJ00117.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 155-74] Length = 382 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + + + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVPVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTVFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|91776296|ref|YP_546052.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus KT] gi|91710283|gb|ABE50211.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus KT] Length = 381 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ KTE P+ ++IE A +G+ P SRE S ++A + L+ S ++ S Sbjct: 1 MA-QDSDLEKTEQPTPRRIEKAREDGDVPRSREFSTCVVLMAGGLGLMMLGSRLNQAMLS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L ++ D S ++ + L P +LL ++ +G+ ++ + Sbjct: 60 NMISSLR-ISREAAFDFSLLLSKIASGVLDLLIAFAPLILLLLVVIVGAPVLVGGWNFSN 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F +++ GIK ++S N+LV +K+ +K LVGT+ + + ++ T+L + Sbjct: 119 KAFLPKFSKLNPLNGIKNLFSKNSLVELIKAILKAALVGTVSYMVMAHDFDTLLSLPTQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + K + I+ + + ++D+ + + +KLKM+K+E+K E K+S GNP Sbjct: 179 LETGIAQVDDILIKGFLFIVSALVLVALIDVPYQRWSYTNKLKMTKEEVKQEAKESDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R R +MM +A ++ITNPTHYA+A++Y AP ++AKG + IA Sbjct: 239 QIKGRIRQQQREMARRRMMAEIPKADVVITNPTHYAVAIKYDDQSMAAPRVIAKGADDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHN+ I E P LAR+LF + IP Y AVA+++ ++ + Sbjct: 299 LKIREIAGEHNVAILESPKLARALFAHTELGDEIPQALYAAVAEILAYVFQLR 351 >gi|157161351|ref|YP_001458669.1| flagellar biosynthesis protein FlhB [Escherichia coli HS] gi|170019775|ref|YP_001724729.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739] gi|188494102|ref|ZP_03001372.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] gi|193069902|ref|ZP_03050851.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019] gi|194439073|ref|ZP_03071156.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1] gi|218695446|ref|YP_002403113.1| flagellar biosynthesis protein FlhB [Escherichia coli 55989] gi|253773163|ref|YP_003035994.1| flagellar biosynthesis protein FlhB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161940|ref|YP_003045048.1| flagellar biosynthesis protein FlhB [Escherichia coli B str. REL606] gi|300822346|ref|ZP_07102487.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7] gi|300928913|ref|ZP_07144417.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1] gi|301645603|ref|ZP_07245532.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|307138545|ref|ZP_07497901.1| flagellar biosynthesis protein FlhB [Escherichia coli H736] gi|331642498|ref|ZP_08343633.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] gi|157067031|gb|ABV06286.1| flagellar biosynthetic protein FlhB [Escherichia coli HS] gi|169754703|gb|ACA77402.1| flagellar biosynthetic protein FlhB [Escherichia coli ATCC 8739] gi|188489301|gb|EDU64404.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] gi|192956802|gb|EDV87256.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019] gi|194422032|gb|EDX38036.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1] gi|218352178|emb|CAU97917.1| flagellar export pore protein [Escherichia coli 55989] gi|242377601|emb|CAQ32357.1| flagellar biosynthesis protein FlhB, subunit of Flagellar Export Apparatus and Flagellum [Escherichia coli BL21(DE3)] gi|253324207|gb|ACT28809.1| flagellar biosynthetic protein FlhB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973841|gb|ACT39512.1| flagellar biosynthesis protein B [Escherichia coli B str. REL606] gi|253978035|gb|ACT43705.1| flagellar biosynthesis protein B [Escherichia coli BL21(DE3)] gi|300463067|gb|EFK26560.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1] gi|300525229|gb|EFK46298.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7] gi|301076135|gb|EFK90941.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|315617894|gb|EFU98492.1| flagellar biosynthetic protein FlhB [Escherichia coli 3431] gi|323937138|gb|EGB33418.1| flagellar biosynthetic protein FlhB [Escherichia coli E1520] gi|323961935|gb|EGB57534.1| flagellar biosynthetic protein FlhB [Escherichia coli H489] gi|323972611|gb|EGB67814.1| flagellar biosynthetic protein FlhB [Escherichia coli TA007] gi|331039296|gb|EGI11516.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] gi|332089613|gb|EGI94715.1| flagellar biosynthetic protein FlhB [Shigella boydii 5216-82] gi|332343606|gb|AEE56940.1| flagellar biosynthetic protein FlhB [Escherichia coli UMNK88] Length = 382 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|307731376|ref|YP_003908600.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003] gi|307585911|gb|ADN59309.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003] Length = 401 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTE+ + +++E A EG SRE S F+ +LA + ++ S I Sbjct: 1 MAE-ESDLEKTESATPRRLEKAREEGQIARSRELSTFA-LLAAGFFGVWAMSGSIGQHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ + + + ++ S ++P L L + + + L+ Sbjct: 59 DMLRTAFTFDHATVFETRRMMTGAGTASREGLYALLPILALTGAAALLAPMALGGWQLST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R++ G+ +I+SIN V + S K ++VG I ++ +L + Sbjct: 119 KGLEPKFDRLNPIAGLGKIFSINGPVQLVMSIAKTLVVGIIGGTAIWNRREEILALSTQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P Sbjct: 179 LHLALANTVHLIAVCCAMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351 >gi|291283062|ref|YP_003499880.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str. CB9615] gi|209767298|gb|ACI81961.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|209767304|gb|ACI81964.1| flagellar biosynthesis protein FlhB [Escherichia coli] gi|290762935|gb|ADD56896.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str. CB9615] gi|320641734|gb|EFX11122.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. G5101] gi|320647094|gb|EFX15927.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str. 493-89] gi|320652377|gb|EFX20675.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str. H 2687] gi|320657978|gb|EFX25740.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658551|gb|EFX26245.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str. USDA 5905] gi|320668449|gb|EFX35276.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. LSU-61] Length = 382 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|309702103|emb|CBJ01418.1| flagellar biosynthesis protein FlhB [Escherichia coli ETEC H10407] Length = 382 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSD 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|312969924|ref|ZP_07784107.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70] gi|310338209|gb|EFQ03298.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70] Length = 382 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|220932506|ref|YP_002509414.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168] gi|219993816|gb|ACL70419.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168] Length = 356 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/347 (29%), Positives = 187/347 (53%), Gaps = 1/347 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + KTE P+ +++ A +G S+E S +++ + L F IYS+T+ + Sbjct: 4 NQSGEKTEKPTPRRLRKARQQGQVAKSQELSSAFTLMGGFLVLFFIIKNIIYSLTNRMSY 63 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L+ K+ D++ + L+ A RL+ P LL + G+ +Q P+ + +K Sbjct: 64 FLSLEAYNKINDVNSLYILIDSFYFIA-RLISPVLLASAIIGLVVNFLQVGPLFVPDLIK 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P K+++ G KR++S+ ++V +KS KI +V + + L ++ T+++ Sbjct: 123 PDLKKINPISGFKRLFSLKSVVELIKSLFKIAIVAILAYLQLKNSWQTLINLSRQGITEA 182 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + + KV I I++ + L + D + ++ LKM+KQE+K+E K+ G+P IK+ Sbjct: 183 VAYLGHLIFKVAITIIICLVVLGIADYIYQKWEYIRNLKMTKQEVKEEHKEIEGDPRIKS 242 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +++ R ++M++A A ++ITNPTH A+AL+Y +APV+VAKG+ IAKK++ Sbjct: 243 KRREKQREMTLNRMIKAMEEADVVITNPTHIAVALKYDINSMEAPVVVAKGEGFIAKKIK 302 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + A E I I E LAR+L I IP Y+AVA+++ +Y Sbjct: 303 EKARELKIEIVENKPLARALNATTEIGEEIPVDLYQAVAEVLAFLYK 349 >gi|218778857|ref|YP_002430175.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans AK-01] gi|218760241|gb|ACL02707.1| Flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans AK-01] Length = 358 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE P+ KK +DA +G SR+ S ++A L + F Y +TS Sbjct: 1 MADSPN-EDKTEQPTPKKRDDARKKGQVAKSRDLSSVVVLMAGLGIMYMFGPYMHYHITS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T + I L + ++ P L + G S +Q + Sbjct: 60 LMENIFT--TDVSAWGVEEINTLGREMVREFLFILAPILAGVFVVGFASAAVQVGFYFSW 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F +++ G R++S LV KS K+ +VG I +++ ++ + Sbjct: 118 EAAAPKFSKINPISGFGRMFSKQALVELAKSLAKLFIVGFISYLTIEAEMDNLILLGQVD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + + K+ I + + + + VLD + +LKM+KQE+KDE KQ+ G+P Sbjct: 178 AANTLAYVLKIILKLFIRVGIIMVFVAVLDFAFQKWHHEQQLKMTKQEVKDEYKQTDGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R + I R +MME +A +++TNPTH ALA++Y AP++VAKG IA Sbjct: 238 MVKARIRRIQMEAARRRMMEEVPKADVVVTNPTHLALAIKYNALTMGAPLIVAKGAGPIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K++++A E+++PI E LAR+L+K V I +P Y+AVA+++ +Y K Sbjct: 298 QKIKEVARENDVPIVENKELARALYKVVDIGDEVPVALYEAVAEVLAYVYGLK 350 >gi|256022455|ref|ZP_05436320.1| flagellar biosynthesis protein FlhB [Escherichia sp. 4_1_40B] Length = 382 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKCSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|120554898|ref|YP_959249.1| flagellar biosynthesis protein FlhB [Marinobacter aquaeolei VT8] gi|120324747|gb|ABM19062.1| flagellar biosynthetic protein FlhB [Marinobacter aquaeolei VT8] Length = 378 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 177/354 (50%), Gaps = 2/354 (0%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E ND KTE P+ +++E A EG S+E + + +LA LL F + S+ Sbjct: 1 MAEENDNSQEKTEEPTPRRLEKAKEEGQTARSKELATMAVLLAGAGGLLIFGTSLGASIE 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 S + + + D H+ L + A+ + P L++ ++ I + + + Sbjct: 61 SIMRDSFV-IERSAIFDTRHMSVQLILAAKEAAWALSPILVMLLIAAIAGSIGIGGLLFS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P F R+ +G+ R++S+ +L+ +K+ K+ LV + + L +L Sbjct: 120 AKAIAPKFNRMDPIKGLGRMFSMRSLIELVKAIAKVGLVMAVAILILNLRTEDLLAIAEE 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + H +T+ + + +D+ + + KL+M+KQE+KDE K + G Sbjct: 180 PTVPAMEHVLWTLGWSFFFLSCATIAIAAIDVPFQIYDHQKKLRMTKQEVKDEYKDTEGK 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K + + + R + +MM+ +A ++ITNPTHYA+AL+Y Q APV+VAKG + + Sbjct: 240 PEVKGKIRQLQREMAQRRMMQDVPKADVVITNPTHYAVALKYDQKTMGAPVVVAKGADEV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+ +IA E+ + + P L R+++ I IP Y A+AQ++ ++ + Sbjct: 300 AFKIMEIARENKVEVLRTPPLTRAVYHNTDIGEEIPDGLYMAIAQVLAYVFQLR 353 >gi|254246770|ref|ZP_04940091.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] gi|124871546|gb|EAY63262.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] Length = 414 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 177/350 (50%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +++ +KTEA + ++ E A EG SRE + F+ + A P + + L Sbjct: 18 DESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLR 77 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + D ++ SL ++P L L + + + + +++ Sbjct: 78 GAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQKTF 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F R++ G+ RI+SI + S K ++VG I I++ + +L + + Sbjct: 137 ELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLGA 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 197 ALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 257 GRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 317 RELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366 >gi|206558545|ref|YP_002229305.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia J2315] gi|198034582|emb|CAR50448.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia J2315] Length = 399 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ +KTEA + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D ++ SL ++P L L + + + + +++ Sbjct: 60 MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|300935856|ref|ZP_07150814.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] gi|300458968|gb|EFK22461.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] Length = 382 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DEIDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|107024383|ref|YP_622710.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia AU 1054] gi|116688291|ref|YP_833914.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia HI2424] gi|105894572|gb|ABF77737.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia AU 1054] gi|116646380|gb|ABK07021.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia HI2424] Length = 399 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ +KTEA + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D ++ SL ++P L L + + + + +++ Sbjct: 60 MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|126665002|ref|ZP_01735985.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17] gi|126630372|gb|EBA00987.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17] Length = 377 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 181/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D+ KTE + +++E A +G S+E + + ++A LL F + ++ + Sbjct: 1 MADDDSSQEKTEEATPRRLEKAKEDGETARSKELATTAVLMAGAGGLLIFGTHLGAALEA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + D+ H+ L + +A+ + P L++ ++ I + + + Sbjct: 61 IMRDAF-TLERSAIFDMRHMSVQLIASTKAAAWALSPILVMLLVAAIAGSIGIGGLLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ +GI R++S +L+ K+ K+ LV TI + L +L + Sbjct: 120 KSIAPKLNRMNPIKGIGRMFSARSLIELFKAIAKVGLVLTIAILILQVRTVDLLSISAEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H +T+ ++ + V+D+ + + + KLKM+ QE+KDE K S G P Sbjct: 180 AVPAMEHVLWTLGWSFFLLSCATIIIAVIDVPFQIYDHHKKLKMTMQEVKDEHKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM+ A ++ITNPTHYA+AL+Y AP++VAKG + +A Sbjct: 240 EVKGRIRQLQREMSQRRMMQDVPTADVVITNPTHYAVALKYDPNSMAAPMVVAKGGDELA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+ +IA E+ + I P LAR+++ I IP Y A+AQ++ ++ + Sbjct: 300 FKIMEIARENKVEILRTPPLARAVYHNSDIGQEIPDGLYMAIAQVLAYVFQLR 352 >gi|308187224|ref|YP_003931355.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1] gi|308057734|gb|ADO09906.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1] Length = 383 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 186/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++KTE+P++ ++E A EG P SRE + +LA ++ L + + + + Sbjct: 1 MAE-DSDEDKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWMGGNMMAHRLAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D IV + L A ++P + ++ I + ++ V + Sbjct: 60 MVATGLR-FDHGMVRDDKIIVSHIGSLITQALMALLPLMGGLVLVAIAAPMLLGGLVFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K++S G KR+++ K +K ILVG + + ++ ML IS Sbjct: 119 KSIKFDLKKMSPMAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRLISEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L H + +++L + + D+ W + + KLKMS QEI+DE KQ G+P Sbjct: 179 PVTALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH IP+ E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 299 LRIRELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 351 >gi|254785483|ref|YP_003072912.1| flagellar biosynthesis protein FlhB [Teredinibacter turnerae T7901] gi|237686236|gb|ACR13500.1| flagellar biosynthetic protein FlhB [Teredinibacter turnerae T7901] Length = 377 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE + +++E A EG P SRE + + +LA I L+ F + + Sbjct: 1 MAEQDSSQEKTEEATPRRLEKAREEGQVPRSRELTTTAVLLAGTISLV-LFGGVMANAQL 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L + + D + L A ++P + ++ I + + + Sbjct: 60 EIMRLNFDLPREVIFDPELMFAQLGASFKEALLSLMPLFAVILVAAIAGPVALGGWLFSS 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+ +G+ R++S+ +L+ +KS K+ +V + + L++ +L Sbjct: 120 KALAPKLNRMDPIKGLGRMFSMKSLIELVKSIGKVAIVVGVAFVLLSQMKTALLGLSQEG 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ +++ + +DI + KLKMS+Q+I+DE+K + G P Sbjct: 180 LEQAIIHSLTLSLWAAVLLSASTIVIAAMDIPFQIWDHSKKLKMSRQDIRDEMKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K++ + + + +++MM A A ++ITNPTHY++ALRY PV+VAKG + +A Sbjct: 240 EVKSKIRQMQQEMAQNRMMSAVPEADVVITNPTHYSIALRYDPKTMSTPVVVAKGIDFVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E+ I + P LAR+++ + IP Y AVAQ++ ++ + Sbjct: 300 MKIREIARENKIEFVQAPLLARAIYATTDLEDEIPEGLYVAVAQVLAYVFQLR 352 >gi|3169254|gb|AAC17834.1| flagellar protein FlhB [Escherichia coli] Length = 382 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+R R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRARARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPRLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|209547917|ref|YP_002279834.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533673|gb|ACI53608.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 359 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 150/350 (42%), Positives = 238/350 (68%), Gaps = 1/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + + Sbjct: 1 MADDD-KDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGHMAE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + Q K+E ++ L L + + L+ P +LFM+FGI S + Q +P L Sbjct: 60 TLRDIFDQPDQWKIETGPDVLSLFVKLGWAIAALLAPAFILFMVFGIASSIFQNLPTPVL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +R++S+ L+ F KS K+++VG I+ L YF+ +D + ++ Sbjct: 120 ERIRPQASRISPVKGWERLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +IL +RK++I++L+ A + ++D+ W+ H W+++LKM++ EIK+E KQ+ G+P Sbjct: 180 PQTILVRISTAMRKIIIVVLIATAIVAIVDVFWTRHHWFTELKMTRHEIKEENKQAQGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA Sbjct: 240 FVKGRQRSLMRDRARRRMISNVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV +++ IP VFYKAVA+LI+++Y Sbjct: 300 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDTVIPSVFYKAVAELIHRVY 349 >gi|116694207|ref|YP_728418.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha H16] gi|113528706|emb|CAJ95053.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 380 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S +++E A EG SRE + F ++A + L S+ Sbjct: 1 MSE-ESDLEKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVTGLWTLGGHLGRSLNQ 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L D S ++ + + +P L LF + + + L+ V + Sbjct: 60 VMQGALR-FEPATAFDTSRMLSRFAMMVWDSLLAFLPLLFLFGVAALAAPLLLGGWVFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F R+S G+ R++S ++LV +K+ K +LVG++ L + ++A Sbjct: 119 KSFAPQFSRLSPLAGLGRMFSAHSLVELLKAVAKSLLVGSVGAWVLWRRLPEAIALMNAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L H V +++ L + + +D+ W Y +++ KL+M+K+E+K E K+S G+P Sbjct: 179 VQEALLHMVDLVMYCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R+ R +MM +A +++TNPTH+A+ALRY + AP +VAKG IA Sbjct: 239 HIKGRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKGTGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351 >gi|170731604|ref|YP_001763551.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia MC0-3] gi|169814846|gb|ACA89429.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia MC0-3] Length = 399 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ +KTEA + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D ++ SL ++P L L + + + + +++ Sbjct: 60 MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGVALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|300717104|ref|YP_003741907.1| flagellar biosynthesis protein [Erwinia billingiae Eb661] gi|299062940|emb|CAX60060.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661] Length = 381 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 191/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ + KTE+ + +IE A EG P SRE + ++A L L + + + Sbjct: 1 MA-GDSEEEKTESATPHRIEKAREEGQIPRSRELTSVLMLVAGLSILWITGATMARKIGA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D S ++ LL +L +IP + ++ I + ++ V++ Sbjct: 60 LLADGLK-FNHSVVSDTSQMLHLLGNLVQQGIFTLIPMMAGLVLVAIAAPMLLGGVVISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +GI +++S +KS +K ILVG + + + ++ ML IS + Sbjct: 119 KAIKFDVGKMNPIKGIGKLFSGQTAAELLKSVLKAILVGCVTWLYIRHHWPDMLRLISES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P++ L ++ + ++++ ++ + + D+ W + ++ L+M++Q+I+DE KQ G+P Sbjct: 179 PYNALANSLNMIAMCSVLVVFGLSPMVMFDVFWQLYSYFKGLRMTRQDIRDEYKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDERKMSAPKVVAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IPI E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 299 LRIRELGKEHRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351 >gi|162139338|ref|YP_689375.2| flagellar biosynthesis protein FlhB [Shigella flexneri 5 str. 8401] Length = 397 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|24113260|ref|NP_707770.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str. 301] gi|30063328|ref|NP_837499.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str. 2457T] gi|24052262|gb|AAN43477.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 2a str. 301] gi|30041580|gb|AAP17308.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 2a str. 2457T] gi|281601322|gb|ADA74306.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 2002017] gi|313650088|gb|EFS14501.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2a str. 2457T] gi|332757344|gb|EGJ87681.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2747-71] gi|332757435|gb|EGJ87770.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-671] gi|332766606|gb|EGJ96810.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2930-71] gi|333017652|gb|EGK36964.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-304] Length = 397 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|241203095|ref|YP_002974191.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856985|gb|ACS54652.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 359 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 153/350 (43%), Positives = 239/350 (68%), Gaps = 1/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ Sbjct: 1 MADDD-KDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPDSVGRMSE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + Q K+E ++ L L +++ LV P +LFM+FG+ S + Q +P L L Sbjct: 60 TLRDIFEQPDQWKIETGPDVLALFVRLGWASAALVAPAFILFMVFGVASSVFQNLPTLVL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G R++S+ LV F KS K+++VG I+ L YF +D + ++ Sbjct: 120 ERIRPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P Sbjct: 180 PQTILVRLMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA Sbjct: 240 FVKSRQRSLMRDRARRRMIADVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y Sbjct: 300 LKIREIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 349 >gi|315121857|ref|YP_004062346.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495259|gb|ADR51858.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 354 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 312/352 (88%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSEND P+NKTE+PSSKKIEDAL++GNAP+SRE LFSS LACLIYLLFF SPGI+ +T Sbjct: 1 MSENDNPENKTESPSSKKIEDALSKGNAPVSREVYLFSSTLACLIYLLFFVSPGIHDLTY 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D + LAS TQ KL+ +SH+VFLL L S S+L+IPGLLLFM+FG+GSYLIQRIP NL Sbjct: 61 DFRMFLASVTQWKLDSVSHLVFLLVTLGFSTSKLLIPGLLLFMIFGVGSYLIQRIPSFNL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N+++PS KR+SLREGIKRIYS NNLVNF KS KI++VGT+I ISL +N+ TML+ I++N Sbjct: 121 NNIRPSLKRISLREGIKRIYSTNNLVNFTKSSFKIVIVGTLIAISLKDNHLTMLESITSN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P IL+H FFT+RK+LI+ILLFIA LT++DIGW+Y+QWYSKLKMSKQE+KDEIKQSYGNP Sbjct: 181 PQIILHHIFFTIRKILIIILLFIAILTIIDIGWTYYQWYSKLKMSKQEVKDEIKQSYGNP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+RQKSIARSRIRHKM+EATSRAT++ITNPTHYALALRY+ TEND P+++AKGQNLIA Sbjct: 241 MIKSRQKSIARSRIRHKMIEATSRATLVITNPTHYALALRYVPTENDVPIMIAKGQNLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+RKIA E NIPIFE+P LARSLF+QVPINS+IPPVFYKA+AQLI+KIY K Sbjct: 301 SKIRKIASEKNIPIFEDPLLARSLFRQVPINSSIPPVFYKAIAQLIHKIYSK 352 >gi|117923329|ref|YP_863946.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1] gi|117607085|gb|ABK42540.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1] Length = 355 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 191/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D D+KTE P+SK++ D+ N+G S+E +LA L L + ++ Sbjct: 1 MADED-KDSKTEEPTSKRLSDSRNKGQVVSSKEVPTALLMLAALAVFLVQGNELWQALQR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +H L+ + + + + + + + P LF++ I S LIQ ++ Sbjct: 60 KMHFFLSGQISDDI-TPTGVSLIFNEIIRAVVMDLAPFFALFLVVAIISGLIQHGWLITF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +V+ +G+KR++S+ +LV KS VKI ++ + +++ N +L Sbjct: 119 EPLMPKFSKVNPLQGLKRLFSVRSLVEAFKSIVKIFVISFAVYLAMRNNIDQILGLADTT 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F ++L + L + VLD + + L+MSKQEIKDE+KQ G+P Sbjct: 179 ITEFTTLMFKDSLEILWRVTLAFLLIAVLDFIYQKFDYIKGLRMSKQEIKDEMKQMEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R + I R + +MM+ +A +IITNPTHYA AL+Y + AP LVAKG+ LIA Sbjct: 239 LLKGRIRQIQRELAQSRMMQEVPKADVIITNPTHYACALQYTPGQMSAPKLVAKGKGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+NIP E P LAR+L++ V + IPP +KAVA+++ ++ K Sbjct: 299 ARIRELADENNIPRVENPPLARTLYRDVELEQFIPPELFKAVAEVLAYVFSLK 351 >gi|304396256|ref|ZP_07378138.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB] gi|304356625|gb|EFM20990.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB] Length = 382 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 104/350 (29%), Positives = 184/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ ++KTE+P++ ++E A EG P SRE + +LA ++ L + + + + + Sbjct: 2 SDSDEDKTESPTAHRLEKAREEGQIPRSRELTSVLMLLAGIMILWMGGNMMAHRLAAMVA 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + D IV + L A ++P + ++ I + ++ V + + Sbjct: 62 TGLR-FDHGMVRDDKIIVSHIGSLITQALMALLPLMGGLVLVAIAAPMLLGGIVFSGKSI 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K K+++ G KR+++ K +K ILVG + + ++ ML IS P + Sbjct: 121 KFDPKKMNPIAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRLISEAPVT 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L H + +++L + + D+ W + + KLKMS QEI+DE KQ G+P +K Sbjct: 181 ALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQEGDPHVK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA ++ Sbjct: 241 GRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGAGEIALRI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH IP+ E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 301 RELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 350 >gi|270262410|ref|ZP_06190681.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13] gi|270043094|gb|EFA16187.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13] Length = 398 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 181/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+EAP++ ++E A +G P SRE + ++A L + + + L Sbjct: 18 EDSDLEKSEAPTAHRVEKAREDGQIPRSRELTSVLMLVAGLSIIWVAGGGMAQQLAAMLT 77 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + + + ++ L L A ++P + ++ I + ++ +L+ + Sbjct: 78 QGL-NFDHTMVSNDKQMLRQLGMLLRQAVWALLPIMAGLVLVAITAPMLLGGLLLSGKSL 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K KR++ G+KR++S L +K +K LVG I + L ++ ML ++ P Sbjct: 137 KFDVKRMNPLSGLKRMFSSQVLAELLKGLLKATLVGWITGLYLWHHWAEMLHLVTQQPLD 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L +A + ++++L + + D+ + + KLKM+KQ+I+DE K G+P +K Sbjct: 197 ALGNALRMIIFCGLLVVLGLTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDPHVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA ++ Sbjct: 257 GRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDQKMSAPKVLAKGAGEIALRI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 317 RELGTEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLR 366 >gi|152983829|ref|YP_001349232.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PA7] gi|150958987|gb|ABR81012.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PA7] Length = 378 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +A +G P SRE + + ++A LL + + ++ Sbjct: 1 MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAAAMLR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + + ++ LL A++ + P LL+ ++ I + + ++ Sbjct: 61 LMRSSFE-LSRETVLNTESMLQLLGASGYLAAQGLWPILLMLLVAAIVGPIALGGWLFSM 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ G+KR++S +L+ K+ +K ++V + + L+ + +L Sbjct: 120 DALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + +D+ + KL M+KQE++DE K S G P Sbjct: 180 LEQAILHSAQVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLMMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K++ + + R + +MM A A ++ITNPTH+A+AL+Y AP+L+AKG + +A Sbjct: 240 EVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y K Sbjct: 300 LKIREVAREHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352 >gi|117617532|ref|YP_855917.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558939|gb|ABK35887.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 376 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 173/354 (48%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +TE P+ K+++ A +G S+E S +LA + LL ++ Sbjct: 1 MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVK 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + + + D + ++ +L L + +L + ++ + Sbjct: 59 VLTMGF-TLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNILMGGMNFSS 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P + ++S GIKR++ + +LV +KS K++ + L+ + +L+ Sbjct: 118 EAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEG 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A + +LI++ + + +D+ + +LKM+KQE+KDE K S G P Sbjct: 178 YPGGIIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLI 299 +K R + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG + I Sbjct: 238 EVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEI 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+IA E+ IP+ P+L R+++ I IP + AVAQ++ +Y K Sbjct: 298 AMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 351 >gi|89094442|ref|ZP_01167382.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] gi|89081334|gb|EAR60566.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92] Length = 379 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K+I +A +G+ P S+E + ++A + ++ F S S+ Sbjct: 1 MAE-DSGQEKTEDPTPKRIREAREKGDVPRSKELATTLVLMAAVFSVIIFSSQLAESMLG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D + ++ + A + + + + + + Sbjct: 60 MMESNFV-LDRQSVFDTNKMLAHFEVSAEEAIMGLAGIFAVLALAALVGPIALGGWNFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+ GIKR++S+ +L+ K+ K LVG + L +L S Sbjct: 119 QSIVPKGSRIDPLAGIKRMFSLKSLIELFKAIAKFSLVGGFAILILWTIREDILALASYE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A + V + + + + V+D+ + + + K++M+ QE+KDE+K + G P Sbjct: 179 ARVAIDEALDIIIWVFMALSAVLILVAVVDVPYQLYDYTQKMRMTMQEVKDELKNTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM+A A ++ITNPTHY++AL+Y APVL+AKG + +A Sbjct: 239 EVKGRIRQLQREIAQRQMMQAVPEADVVITNPTHYSVALKYDGENRGAPVLLAKGADFVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+IPI P LAR+++ I+ IP Y AVAQ++ ++ K Sbjct: 299 LKIREIAKEHDIPILSAPPLARAIYNSTEIDDEIPSGLYMAVAQVLAYVFQLK 351 >gi|86356301|ref|YP_468193.1| flagellar biosynthesis protein FlhB [Rhizobium etli CFN 42] gi|86280403|gb|ABC89466.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN 42] Length = 373 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 150/347 (43%), Positives = 235/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E ++ L L + + L+ P +LFM+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDVLSLFVRLGWAIAALLAPAFILFMVFGIASSVFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ L+ F KS K+++VG I+ L YF+ +D + ++P + Sbjct: 137 RPQASRISPAKGWGRLFSLPGLIEFGKSLFKVVVVGLILFFVLRSEYFSSIDAMFSDPQT 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D+ W+ H W+++LKM++ EIK+E KQ+ G+P +K Sbjct: 197 ILVRISTAMRKIVIVVLIATAIVAIADVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363 >gi|190890352|ref|YP_001976894.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|190695631|gb|ACE89716.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] Length = 373 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 149/347 (42%), Positives = 233/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ L+ F KS K+++VG I+ L YF +D + ++P + Sbjct: 137 RPQASRISPVKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D W+ H W+++LKM++ E+K+E KQ+ G+P +K Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363 >gi|152997434|ref|YP_001342269.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1] gi|150838358|gb|ABR72334.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1] Length = 378 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE+ SSKK++DA N+GN P S++ S ++ + + + + Sbjct: 1 MAENEDGSEKTESASSKKLQDARNKGNLPRSKDLSSALLLIVAAATIYGTGTLLVRDLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D+S +VF L ++ ++ + + + GI + + Sbjct: 61 -LFDFNFLVERADVFDLSRMVFHLYESVVAMMDSMVLLMAVLAVAGIVGSIALGGLNFSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++S G+KR++S+ +LV KS K+ LVG + + + L + Sbjct: 120 EPLTPKLSKMSPIAGLKRMFSVQSLVELFKSIAKVTLVGIVSVLVVNYFLPETLGLTFQS 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H V + + L +A + +D+ + KLKM+KQE+KDE KQ G+P Sbjct: 180 IELAIAHGIDIVIWSFVFVTLALALIAAIDVPFQVWSHKEKLKMTKQEVKDEYKQQEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ R + + R ++MM A +IITNPTH+++AL+Y Q APVL+AKG + IA Sbjct: 240 LVRGRIRQMQRQAAMNRMMSDVPSADVIITNPTHFSVALKYDQAGGAAPVLLAKGGDFIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++ ++IP+ + P+LAR+++ I IP +K VAQL+ +Y + Sbjct: 300 LKIREVGNHYDIPVIQSPALARAIYHHTEIGDEIPQGLFKVVAQLLAYVYQLR 352 >gi|209695727|ref|YP_002263657.1| flagellar biosynthesis protein FlhB [Aliivibrio salmonicida LFI1238] gi|208009680|emb|CAQ79979.1| polar flagellar assembly protein FlhB [Aliivibrio salmonicida LFI1238] Length = 376 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D +TE +SK+++ A ++G S+E + S ++ I L++F ++ S Sbjct: 1 MADSD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAISLMWFGDEVGKALLS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S ++ ++ D + ++ ++ ++ V+ LL+ + + + Sbjct: 60 IMSRFF-SISREEIFDTNKLLEIVGGALVALVFPVLKILLMLFVAALIGAAGLGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LVG + ++ + Sbjct: 119 EAAMPKPSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGTAFYLINKSKADLFQLSLDT 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S ++H+ + +++I + + +DI + Q ++LKM+KQEIKDE K++ G P Sbjct: 179 YPSNIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +I+TNP HY++ALRY QT++ AP++VAKG + IA Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVIVTNPEHYSVALRYDQTKDSAPIVVAKGVDHIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ K Sbjct: 299 MKIREIAREHNIDILPAPPLARALYHSTEVEQQIPDGLFAAVAQILAYIFQMK 351 >gi|170694379|ref|ZP_02885533.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] gi|170140802|gb|EDT08976.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] Length = 401 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTE+ + ++++ A EG SRE S F+ +LA + ++ S I Sbjct: 1 MAE-ESDLEKTESATPRRLQKAREEGQIARSRELSTFA-LLAAGFFGVWGMSDSIGEHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + ++ S ++P L + + + + L+ Sbjct: 59 AMLRAAFTFDHAGAFETHRMMIGAGAASREGLYALLPILAVTGAAALLAPMALGGWQLST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F+R++ G+ +I+SIN + S K ++VG I ++ +L + Sbjct: 119 KGLEPKFERLNPIAGLGKIFSINGPIQLAMSLAKTLVVGIIGGTAIWNRREEILALATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351 >gi|77359754|ref|YP_339329.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis TAC125] gi|76874665|emb|CAI85886.1| Flagellar biosynthetic protein flhB, putative part of export apparatus for flagellar proteins [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE P+SKK+EDA +G S+E ++ I LL + + + Sbjct: 1 MSE-DSGQEKTEEPTSKKVEDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +L S + + D + + + ++ + + +L+ ++ + + Sbjct: 60 VMGRML-SLNRNETYDTTKMFAVWGEVADALMFPMAMFVLIIVLAAFIGNTMLGGFNFSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S +G KR++ V +KS +K LV + + + +L + Sbjct: 119 QAAAPKASKMSPAKGFKRMFGPQAGVELLKSLLKFGLVASFAVFLINTFFDEILHLSVES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA + + + + + + +D + + +LKM+ QE+KDE K S G+P Sbjct: 179 APGNIIHALEILAWMFLGLSCTLIIIAAIDAPFQSYNHNKQLKMTLQEVKDEYKNSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R + +MM+ A +I+TNPTHY++AL+Y AP++VAKG + +A Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVVAKGIDEMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++RKIA + +PI E PSL R+L+ + IP + AVAQ++ ++ K Sbjct: 299 MQIRKIAIGNEVPILESPSLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351 >gi|291613025|ref|YP_003523182.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus ES-1] gi|291583137|gb|ADE10795.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus ES-1] Length = 381 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 110/353 (31%), Positives = 190/353 (53%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE+PS ++++ A EG SRE S F+ ++A + + S Sbjct: 1 MAEQDSDLEKTESPSQRRLDQAREEGQVARSRELSTFAVLMAGGAGIWLMGGMLSQQLIS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T +V L LS+S + +P L L + S L+ + L Sbjct: 61 LIREGLTLDTGLAFHS-ELLVPRLHDLSMSTLLVFLPLLGLLLAVAAFSPLLLNGWLFTL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P+F +++ GI R++S N+L+ K+ K ++VG I + + N +L +S Sbjct: 120 KPLQPNFGKLNPITGIGRMFSTNSLMELAKAIAKAVVVGGIGALVIWHNKNAVLLLVSEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + H V ++ + + +D+ + + KLKM+K+E++ E K++ G+P Sbjct: 180 IASAIPHLGSLVWGSFAAVMGGLLLIVAVDVPFQLWEHNKKLKMTKEEVRQESKETEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+ R R +MM +A +++TNPTHY++AL+Y ++ APV+VAKG +L+A Sbjct: 240 QVKARVRSMQREMARRRMMAEIPKADVVVTNPTHYSVALKYSDSKMRAPVVVAKGSHLMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA EHN+PI E P LAR+L K + AIP Y AVA+++ +Y + Sbjct: 300 AKIKEIAKEHNVPILEAPPLARALHKHCELGEAIPEALYTAVAEVLAYVYQLR 352 >gi|332756021|gb|EGJ86374.1| flagellar biosynthetic protein FlhB [Shigella flexneri 4343-70] gi|333003254|gb|EGK22800.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-218] Length = 397 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQ G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQGEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|238755333|ref|ZP_04616676.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473] gi|238706469|gb|EEP98843.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473] gi|253317686|gb|ACT22775.1| flagellar biosynthesis protein FlhB [Yersinia ruckeri] Length = 383 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P++ K+E A +G P SRE + + A L L F + + Sbjct: 1 MAE-DSDLEKTEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLSILWVFGESIGRQLAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + L + + ++P + ++ I ++ + Sbjct: 60 MIAQGL-QFNHGVIGNEKQMLRQVGMLLMQTVKALLPVFIGLVLVAISVPMLLGGIAFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 K KR++ G+KR++S L +K+ +K LVG + + L + ML I+A Sbjct: 119 ESFKFDLKRMNPISGLKRMFSSQVLAELLKAILKATLVGWVTGMFLWHYWPDMLRLIAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + +++L + + D+ + KL+M+KQEI+DE K G+P Sbjct: 179 PIAALGDALHLILFCGFIVVLGLTPMVGFDVFYQIMSHIKKLRMTKQEIRDEFKDQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPQADVIVTNPTHYAVALQYNENKMSAPKVLAKGAGEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLK 351 >gi|311992333|gb|ADQ26740.1| protein export component [Aeromonas hydrophila] Length = 375 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 169/350 (48%), Gaps = 2/350 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D +TE P+ K+++ A +G S+E S +LA + LL ++ L + Sbjct: 2 DTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKVLTM 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + + + D + ++ +L L + +L + + + + Sbjct: 62 GF-TLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNTLMGGMNFSSEAML 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P + ++S GIKR++ + +LV +KS K++ + L+ + +L+ Sbjct: 121 PKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEGYPGG 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + A + +LI++ + + +D+ + +LKM+KQE+KDE K S G P +K Sbjct: 181 IIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVKG 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKM 303 R + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG + IA K+ Sbjct: 241 RIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEIAMKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R+IA E+ IP+ P+L R+++ I IP + AVAQ++ +Y K Sbjct: 301 REIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 350 >gi|116250471|ref|YP_766309.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv. viciae 3841] gi|115255119|emb|CAK06193.1| putative flagellar biosynthetic protein [Rhizobium leguminosarum bv. viciae 3841] Length = 365 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 151/347 (43%), Positives = 235/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + +T L Sbjct: 9 DDDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPESVGRMTEMLR 68 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E ++ L + +++ LV P +LFM+FG+ S + Q +P L + Sbjct: 69 DIFEQPDQWKIETGPDVLALFVRIGWASAALVAPAFILFMVFGVASSVFQNLPTPVLERI 128 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ LV F KS K+++VG I+ L YF +D + ++P + Sbjct: 129 RPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 188 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K Sbjct: 189 ILVRMMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 248 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 249 SRQRSLMRDRARRRMIANVDRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 308 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y Sbjct: 309 REIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 355 >gi|238927446|ref|ZP_04659206.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] gi|238884728|gb|EEQ48366.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] Length = 374 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 103/348 (29%), Positives = 181/348 (52%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + S+ + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDYIYLSIAGYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 ++ Q + D +I+ + +++ ++ P + M+ G+ Q N ++ Sbjct: 84 FSNLNQ--VVDAENILRIFIGIAIVLAKTAFPIMFAIMLIGLAINFFQVGLTFNTESIEF 141 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G RI+S +LV KSF KI+++G + + E M F+ + + L Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + +++ I + ++D G+ Q LKM+KQE+KDE+KQS G+P IK + Sbjct: 202 SLVAEIIFHMAFIVIGVIMVMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGK 261 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +IITNPTH+A+AL Y Q AP++VAKGQ+++A+++++ Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHFAIALSYQQG-MSAPLVVAKGQDIVAQRIKE 320 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E +PI E LAR+++ V I AIP Y+AVA+++ +Y K Sbjct: 321 IAREARVPIVENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368 >gi|94264043|ref|ZP_01287843.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] gi|94266371|ref|ZP_01290070.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] gi|93453023|gb|EAT03511.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] gi|93455554|gb|EAT05741.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1] Length = 356 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ +++ +A N+G+ S E + +LA +I L F VT Sbjct: 1 MAEEQSGQEKTEKPTERRLLEARNKGDVAKSMEVPSAAVLLAGVIVLYFTGEYMFNRVTG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L++ ++ S + + + L ++ P +L + + + +Q + Sbjct: 61 MMQFYLSNLHDIEISAAS-MPNITRQVMLLIYTVLWPLMLTVFLAALAANYLQVGFLFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ +G+ R++S L N KS K LVG I + +L Sbjct: 120 EKITPKLEKIDPLKGLGRLFSKQTLNNAFKSIAKFSLVGYIAYSEIIRAMPEILPLADKA 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P+ IL T + + + + ++D + Q+ K+KM+KQ++KDE KQS G+P Sbjct: 180 PYPILVFMVETAFWIFLKCAVLFILIALIDYAFQRWQFMEKMKMTKQDMKDESKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +SI + +MM +A +++TNPTH A+A++Y AP ++AKG ++A Sbjct: 240 HVKGRIRSIQMEMAKKRMMAEVPKADVVVTNPTHLAVAIKYDALTMKAPEVLAKGAGVVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++++A EH +P+ E+ LA++L++ V I +IP ++AVA+++ +Y+ K Sbjct: 300 NKIKEVAREHQVPVVEDKPLAQALYQNVEIGGSIPENLFQAVAEVLAYVYNLK 352 >gi|188592105|ref|YP_001796703.1| flagellar biosynthesis protein flhb [Cupriavidus taiwanensis LMG 19424] gi|170938479|emb|CAP63466.1| FlhB: Flagellar biosynthetic protein. flhB/hrpN/yscU/spaS family [Cupriavidus taiwanensis LMG 19424] Length = 380 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S +++E A EG SRE + F ++A + L S+ Sbjct: 1 MSE-ESDLEKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVTGLWTLGGHLGRSLNQ 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L D + ++ + + +P LLLF + + + L+ V + Sbjct: 60 VMQGALR-FEPATAFDPARMLSRFALMVWDSLLAFLPLLLLFGVAALAAPLLLGGWVFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F R+S G+ R++S ++LV +K+ K +LVG + L + ++A Sbjct: 119 KSFAPQFSRLSPIAGLGRMFSAHSLVELLKAVAKSLLVGAVGAWVLWRRLPEAIALMNAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L H V +++ L + + +D+ W Y +++ KL+M+K+E+K E K+S G+P Sbjct: 179 VQEALLHMVDLVMFCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IKNR + R+ R +MM +A +++TNPTH+A+ALRY + AP +VAKG +A Sbjct: 239 HIKNRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKGTGEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A EH +P+ P LAR+L + V + IP Y AVA+++ +Y K Sbjct: 299 ARIRALAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351 >gi|167587841|ref|ZP_02380229.1| flagellar biosynthesis protein FlhB [Burkholderia ubonensis Bu] Length = 403 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ +KTEA + ++ E A EG SRE + F+ +LA Y + + I Sbjct: 1 MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFA-LLASGFYGTWLLAGPIGRHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + D + ++ +SL + P L + + + + + +++ Sbjct: 59 TMLRGAFTFDRGIAFDTNRMLTSAGSVSLEGLAALAPLLAMMGVAALLAPMALGGWLISS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + R++ G+ RI+S+ + S K ++VG I I++ + +L Sbjct: 119 KTFELKLDRLNPITGLGRIFSVQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLAMQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGAMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC 15579] Length = 587 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 188/348 (54%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 239 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 298 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 299 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 357 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 358 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLKDNYLKILNLGTLRPWYMI 417 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + ++V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 418 TGLLSLAISIFFKITLIMLFISVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 477 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 478 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DSAPKVVAKGADYVAIKIKD 536 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 537 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 584 >gi|169827139|ref|YP_001697297.1| flagellar biosynthesis protein FlhB [Lysinibacillus sphaericus C3-41] gi|168991627|gb|ACA39167.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41] Length = 362 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 181/347 (52%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK +DA +G S++ + +L I+L FF + + Sbjct: 13 SGEKTEKATPKKRQDARKKGQVVKSQDVTSAIVMLMVFIFLFFFAGSLRDELLAFFRQTF 72 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + I ++ L + + +++P + + ++ + +Q + L +K Sbjct: 73 IHNIRIETLTIDSVMHLFIDTLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFD 132 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K++ +G+KRI+S+ +V +KS +KI +G++ TI + N +L +P L Sbjct: 133 LKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSPWITLI 192 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V + I L + +++LD + + LKMSKQ+IKDE K S G+P+IK++ Sbjct: 193 TVGKLVGIMGIAASLVLLCVSILDWLYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIKSKI 252 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA+K++ I Sbjct: 253 KQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEESMDAPRVIAKGTDFIAQKIKLI 312 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K Sbjct: 313 AKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 359 >gi|327193023|gb|EGE59935.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CNPAF512] Length = 373 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 149/347 (42%), Positives = 233/347 (67%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P R+S +G R++S+ L+ F KS K+++VG I+ L YF +D + ++P + Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL +RK++I++L+ A + + D W+ H W+++LKM++ E+K+E KQ+ G+P +K Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+ Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363 >gi|323527726|ref|YP_004229879.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001] gi|323384728|gb|ADX56819.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001] Length = 401 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTE+ + ++++ A EG SRE S F+ +LA + ++ S I Sbjct: 1 MAE-ESDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + ++ S ++P L + + + L+ Sbjct: 59 AMLRAAFTFDHASAFETHRMMAGAGAASREGLYALLPILAFTGAAALLAPMALGGWQLSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R++ G+ +I+SIN + S K ++VG I ++ +L + Sbjct: 119 KGLEPKFDRLNPIAGLGKIFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L + + M + + + LD+ + Q++ KL+MSK+E+K E ++S G+P Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351 >gi|15596646|ref|NP_250140.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAO1] gi|107100883|ref|ZP_01364801.1| hypothetical protein PaerPA_01001913 [Pseudomonas aeruginosa PACS2] gi|116049394|ref|YP_791803.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa UCBPP-PA14] gi|218892678|ref|YP_002441547.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa LESB58] gi|254234548|ref|ZP_04927871.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719] gi|254239799|ref|ZP_04933121.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192] gi|296390184|ref|ZP_06879659.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAb1] gi|313106448|ref|ZP_07792679.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016] gi|9947400|gb|AAG04838.1|AE004574_9 flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PAO1] gi|115584615|gb|ABJ10630.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa UCBPP-PA14] gi|126166479|gb|EAZ51990.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719] gi|126193177|gb|EAZ57240.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192] gi|218772906|emb|CAW28718.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa LESB58] gi|310879181|gb|EFQ37775.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016] Length = 378 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +A +G P SRE + + ++A LL + + ++ Sbjct: 1 MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + ++ LL + A++ + P LL+ ++ I + + ++ Sbjct: 61 LMRSNFE-LSRETAMNTESMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSM 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ G+KR++S +L+ K+ +K ++V + + L+ + +L Sbjct: 120 DALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + +D+ + KL M+KQE++DE K S G P Sbjct: 180 LEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K++ + + R + +MM A A ++ITNPTH+A+AL+Y AP+L+AKG + +A Sbjct: 240 EVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y K Sbjct: 300 LKIREVAQEHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352 >gi|114566403|ref|YP_753557.1| flagellar biosynthesis/type III secretory pathway protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337338|gb|ABI68186.1| flagellar biosynthesis/type III secretory pathway protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 369 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 184/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D KTE + ++ E+A +G S + + ++A + F + ++ S Sbjct: 17 DDGMGEKTEKATPRRREEARKKGQVFKSTDLNSAIILIAGSVASFMAFPYMVNNLKSFTT 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L TQ+ + +I F+L + + +++ P L + + +Q V + + Sbjct: 77 LYLLQRTQQDFSN-DYIYFMLLEVLIIMGKMIFPIFLTTFIVALLITYLQVGFVFSGESL 135 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P +R++ EG KRI+S LV KS +K+I+ G I+ + ++Y FI + Sbjct: 136 TPKLERLNPVEGFKRIFSKRALVELGKSLLKVIVTGYIVYSVMRKHYILFPRFIDMELIA 195 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L V ++ + + L + + D + +++ LKMSK EIK E KQ+ G+P +K Sbjct: 196 GLQVLSSIVFEMAMKVGLVFIIIGIADYIFQWYEHEKSLKMSKYEIKQEYKQTEGDPQLK 255 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +RQ+ I R +MM +A ++ITNPTH+A+ L+Y ++ +APV+VA+G++ +A K+ Sbjct: 256 SRQRRIQRDIAMQRMMAEVPKADVVITNPTHFAVVLKYEASKMEAPVVVARGKDFMALKI 315 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IA H + I E P LAR+L+ I +P Y+AVA+++ +Y +K Sbjct: 316 KEIARMHGVVIVENPVLARTLYYNTEIGDLVPEELYQAVAEVLAFVYKQK 365 >gi|290474957|ref|YP_003467841.1| putative part of export apparatus for flagellar proteins [Xenorhabdus bovienii SS-2004] gi|289174274|emb|CBJ81064.1| putative part of export apparatus for flagellar proteins [Xenorhabdus bovienii SS-2004] Length = 383 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A +G S+E + ++ + LL+ I S Sbjct: 1 MAE-DSDLEKTEEPTPHKREKARKDGQIARSKELTSILMLVGG-VSLLWMSGNSITHELS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + ++ + L A ++P + ++ + + + + + Sbjct: 59 LMVFEGFNFDHNMVSNDKQMIQQVGRLLKQAVWALLPVFVGLVLVALSAPTLMGGLIFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K ++S G+K+I+S+N L K+ +K LVG + + N+ ML+ + Sbjct: 119 KSIKFDLAKLSPISGLKKIFSMNALAELFKAILKASLVGGGTALFIWLNWPAMLNLTAQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A + ++L + + D+ + KL+M++QEIKDE K+ G+P Sbjct: 179 PLMALSDAMMMLIFAGYIVLFMLIPMVAFDVLYQIRSHLKKLRMTRQEIKDEFKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG LIA Sbjct: 239 HVKARIRQQQRAAARKRMMSDVPKADVIVTNPTHYAVALQYDSKKMGAPKVLAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++I E+ IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIKEIGAENRIPLLEAPPLARALFRHAEVGGFIPATLYAAVAEVLAWVYQLK 351 >gi|157371217|ref|YP_001479206.1| flagellar biosynthesis protein FlhB [Serratia proteamaculans 568] gi|157322981|gb|ABV42078.1| flagellar biosynthetic protein FlhB [Serratia proteamaculans 568] Length = 398 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ K+EAP+ ++E A +G P SRE + ++A L + S + L Sbjct: 18 EDSDLEKSEAPTPHRVEKAREDGQIPRSRELTSVLMLVAGLSIIWVAGSNMSQQLAMMLT 77 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + + + ++ L L A ++P + + I + ++ +L+ + Sbjct: 78 QGL-NFDHSMVSNDKQMLRQLGMLLRQAVWALLPVMAGLTLVAITAPMLLGGLLLSGKSL 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K KR++ G+KRI+S L +K +K LVG + + L N+ ML ++ P Sbjct: 137 KFDLKRMNPLTGLKRIFSSQVLAELLKGILKATLVGWVTGLYLWHNWAAMLHLVTQQPLD 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L +A + ++++L + + D+ + + KLKM+KQ+I+DE K G+P +K Sbjct: 197 ALANALQMIIFCGLLVVLALTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDPHVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA ++ Sbjct: 257 GRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDKKMSAPKVLAKGAGEIALRI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++ +H IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 317 RELGMQHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLR 366 >gi|317492437|ref|ZP_07950866.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919776|gb|EFV41106.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 383 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 110/353 (31%), Positives = 183/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE P+S K+E A +G P SRE + + A + LL + + Sbjct: 1 MSE-DSDLEKTEDPTSHKLEKAREKGQVPRSRELTSMLMLAAGISILLIGGEHLARQLAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L Q + + ++ L +L A ++P LL M+ G + ++ N Sbjct: 60 MISQGL-QFDQLLISNDKQMLRQLGNLLQQAVAALMPVLLGLMLVGWAAPMLIGGFFFNP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K ++SL G+KR++S L +K +K+ILV + L + ML I+ + Sbjct: 119 GSIKFDLSKMSLLSGLKRLFSSQALAELLKGVLKVILVSWVAGWFLWHYWGQMLALIAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + A + ++I+L + + D+ + +KLKM+KQEIKDE K+ G+P Sbjct: 179 PLDAMGDALHLIGMCGLLIVLGLVPMVAFDVFYQIWSNLNKLKMTKQEIKDEFKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA Sbjct: 239 HVKGRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++ +H IP E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIKELGNQHRIPQLEAPPLARALYRHSEIGHHIPATLYAAVAEVLAWVYQLK 351 >gi|126653730|ref|ZP_01725648.1| flagellar biosynthesis protein B [Bacillus sp. B14905] gi|126589694|gb|EAZ83830.1| flagellar biosynthesis protein B [Bacillus sp. B14905] Length = 365 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 182/347 (52%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK +DA +G S++ + +L I+L+FF + + Sbjct: 16 SGEKTEKATPKKRQDARKKGQVIKSQDVTSAIVMLMVFIFLIFFAGSLRDELLAFFRQTF 75 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + I ++ L + + +++P + + ++ + +Q + L +K Sbjct: 76 IHNIRIETLTIDSVMHLFIETLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFD 135 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K++ +G+KRI+S+ +V +KS +KI +G++ TI + N +L +P L Sbjct: 136 LKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSPWMTLI 195 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V + I L + +++LD + + LKMSKQ+IKDE K S G+P+IK++ Sbjct: 196 TVGKLVGIMGIAASLVLLCVSILDWMYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIKSKI 255 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA+K++ I Sbjct: 256 KQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEENMDAPRVIAKGTDFIAQKIKLI 315 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K Sbjct: 316 AKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 362 >gi|74317263|ref|YP_315003.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] gi|74056758|gb|AAZ97198.1| Flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] Length = 390 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ +TEAPS +++E A EG SRE + F ++ L S +++ Sbjct: 1 MAE-ESDQERTEAPSPQRLEKAREEGQVLQSRELATFVVLMTGGAALWAMASQLGQTLSQ 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L D +H++ L+ A+ + P LLL ++ S ++ R + + Sbjct: 60 IVRGGL-QFHPAVARDSAHVMTQLSQQFFDATLALAPFLLLVVIATFASPILLRGWLFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P FKR+S G KR++S LV +K+ K+ L+G + + N ++ Sbjct: 119 KAFMPDFKRLSPLAGFKRMFSSQGLVELVKALAKVGLLGGVAAWLVWSNVEAIVSLSLEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + H + KV ++ + + VLD+ + +Y+KLKM+K++++ E K+S G+P Sbjct: 179 PTAAIGHMGDIIGKVFLLASGAMIFIVVLDLPYQLWNFYNKLKMTKEQLRQEAKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R ++ R R +MM A +++TNPTHYA+AL+Y + + AP +VAKG +L+A Sbjct: 239 HVKARIRAQQREVARRRMMAEVPSADVVVTNPTHYAVALKYSEGKMGAPRVVAKGADLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH +P+ E P LAR+LF+ I + IP Y AVA+++ ++ + Sbjct: 299 AKIREIAAEHRVPLLEAPPLARALFRHTDIGNEIPATLYAAVAEVLAYVFQLR 351 >gi|85859183|ref|YP_461385.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus SB] gi|85722274|gb|ABC77217.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus SB] Length = 354 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ +TE + K+ E+A +G SR+ + + + ACL+Y F + ++ + Sbjct: 1 MAESNKDQERTEEATPKRREEAREQGQVAKSRDLASVAILSACLLYFYFGANSFLHQLM- 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL S+ L +I LL L+ P LL+ + + S ++Q ++ Sbjct: 60 DLMKSSFSSLDSSLVTTENIQSLLFSAFYKTITLMTPFLLVVCIAALSSNILQVGFKIST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G R++S+ +L+ F+KS KI + G + +++ +L ++ Sbjct: 120 KAIAPKLSKIDPAKGFARLFSLQSLIEFIKSIFKISIAGFVAYLTVKSELVDILPLADSS 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 IL + T ++L+ + L ++D + ++ LKMS+QEIKDE KQ+ G+P Sbjct: 180 VWEILVYITGTSFRILLTTCWVLIILALMDYLYQRWEYERNLKMSRQEIKDENKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K R + + R + +MM +A +IITNPTH A+AL+Y Q AP ++AKG +A Sbjct: 240 IVKARIRRLQREMAQRRMMANVPKADVIITNPTHLAVALQYDQDSMIAPKVIAKGAGYLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++IA E +P+ E LA+ L+K V ++ IP YKAVA+++ IY K Sbjct: 300 EKIKEIARESRVPLVENKPLAQVLYKMVEVSGTIPDSLYKAVAEILAYIYSIK 352 >gi|119469999|ref|ZP_01612804.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7] gi|119446709|gb|EAW27982.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7] Length = 376 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ KKIE++ +G S+E ++ I LL + + + Sbjct: 1 MAE-DSGQEKTEEPTGKKIEESKKKGQVARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +L S + + D + + + + ++ + + + + + GI + + Sbjct: 60 IMGRML-SLNRNETYDTTKMFAVWSSVADALIFPMAMFVFIILFAGIIGNTLLGGFNFSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S +G KR++ V K+ +K ++V + + + +L + Sbjct: 119 QAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFLVVASFAFFLINTFFDEILHLSIES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + HA + + + + + + +D + H + +LKM+ QE+KDE K S G+P Sbjct: 179 APNNIIHALEILSWMFLALSCTLVIIAAIDAPYQSHTHHKQLKMTLQEVKDEYKNSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R + +MM+ A +++TNPTHY++AL+Y AP+++AKG + +A Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVVVTNPTHYSVALKYDTERAGAPIVLAKGVDELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++RK+A +++PI E P L R+L+ + IP + AVAQ++ ++ K Sbjct: 299 MQIRKVAGGNDVPIVESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351 >gi|330502779|ref|YP_004379648.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] gi|328917065|gb|AEB57896.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] Length = 378 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +K+E P+ K++E++ +G S+E + + L + L+ F + + Sbjct: 1 MAESESGADKSEEPTGKRLEESRKKGQIARSKELNTLAVTLTGTVALIIFGAYMGNVLMD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + + S ++LL A V P LL ++ + + + + Sbjct: 61 IMRGNFSLPREVLMSERSMALYLLAS-GKEALLAVQPFLLALLIASVAGPIALGGWLFSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R++ G+KR++S+ LV +K+ K +++ + + L + +L + Sbjct: 120 EALQPKASRMNPLAGLKRMFSVQALVELVKALAKFLVILAVALVVLAIDQDDLLAIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + +D+ + KL M+KQE++DE K + G P Sbjct: 180 VEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQKLMMTKQEVRDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +MM+A +A ++ITNPTH+A+AL+Y + AP+L+AKG + +A Sbjct: 240 EVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAPMLLAKGGDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAQEHQVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352 >gi|92114138|ref|YP_574066.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens DSM 3043] gi|91797228|gb|ABE59367.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens DSM 3043] Length = 387 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ + KTE P+ ++++ A +G SRE + F +LA + L+ +Y Sbjct: 1 MAE-DSDEEKTEDPTPRRLDKAKEDGEVARSRELTTFM-LLAVGVGSLWSLGGHLYDRMG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D + ++ + L + ++P L+ + + + ++ +++ Sbjct: 59 VVMEQSFLFSRAEAFDTAVLMAHVWTLGQNTLLALLPLFLIVTVVALTAPVMLGGWLISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ +G KR++S L K+ K +LVG + L N +L +S Sbjct: 119 KALQPQISKLNPLKGFKRMFSSQVLAELGKAVAKSVLVGGVAVAFLWLNRGDLLGLMSLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L L + + + + ++D+ + + KL+M+K EIK E K++ G+P Sbjct: 179 LSEALARGMDLAALCLSLCVAMLIVVVLIDVPFQLWSFTKKLRMTKDEIKKEHKETEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R ++ +S R +MM A +I+TNPTHYA+AL Y + +AP +VAKG +L+A Sbjct: 239 QVKARMRAQQQSMARRRMMAKVPEADVIVTNPTHYAVALSYEGSYMEAPRVVAKGSDLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ H +P+ E P LAR+L + V I+ +P Y AVA+++ Y K Sbjct: 299 TRIRELGEAHGVPLLEAPPLARALHQHVDIDQEVPATLYTAVAEVLAWAYRLK 351 >gi|114332395|ref|YP_748617.1| flagellar biosynthesis protein FlhB [Nitrosomonas eutropha C91] gi|114309409|gb|ABI60652.1| flagellar biosynthetic protein FlhB [Nitrosomonas eutropha C91] Length = 376 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +TE S +++E + EG S+E + F+ ++A L S I +++ Sbjct: 1 MAD-DNDLERTEPASPRRLEKSREEGQVARSQELTTFTMLMAASGSLWVIGSLIIQKLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + + ++ L L+L + P L ++ + S ++ + + Sbjct: 60 LLESGL-QIEREVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIVALVSPMLLSGWLFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P FKR++ G KRI+S + L+ +K+ K ++G + + + +LD I Sbjct: 119 KALFPDFKRLNPVNGFKRIFSSHGLIELVKAIAKAAVIGGVAAGIIWSHKQDVLDLIGMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++I+ + L V+D+ + +L+MSK++++ E K+ G+P Sbjct: 179 LDTGLTSMGRLIGLTFMLIVGAMLLLVVIDVPFQLWNHARQLRMSKEDLRKEAKEDEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+ R R +MM RA +++TNPTHYA+AL+Y AP +VAKG LIA Sbjct: 239 QVKARIRSMQREMARRRMMAEVPRADVVVTNPTHYAVALKYQDHSMRAPKVVAKGSQLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH+IP+ E P LAR+L+ V +++ IP Y AVA ++ ++ + Sbjct: 299 ARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYVFQLR 351 >gi|74055047|gb|AAZ95852.1| FlhB [Aeromonas hydrophila] Length = 376 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 168/351 (47%), Gaps = 2/351 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +TE P+ K+++ A +G S+E S +LA + LL ++ L Sbjct: 2 DDTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKILT 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + + + D + + ++ L + +L + + + + Sbjct: 62 IGF-TLDRDQAFDPNAMGAMVPALLRELLHPLGLLFMLVAIAAFIGNTLMGGMNFSSEAM 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P + ++S GIKR++ + +LV +KS K++ + L+ + +L+ Sbjct: 121 LPKWSKLSPLNGIKRMFGVQSLVELIKSIAKVVFITLFAWWMLSSQFNHLLNLSLEGYPG 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + A + +LI++ + + +D+ + +LKM+KQE+KDE K S G P +K Sbjct: 181 GIIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKK 302 R + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG + IA K Sbjct: 241 GRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGAAPKVVAKGTDEIAMK 300 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+IA E+ IPI P L R++F I IP + AVAQ++ +Y K Sbjct: 301 IREIAREYEIPIMPSPGLTRAIFHSTEIGHEIPEGLFAAVAQVLAYVYQLK 351 >gi|289208350|ref|YP_003460416.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix] gi|288943981|gb|ADC71680.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix] Length = 383 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN++ KTE P+ K++ +A +G P SRE S F ++A ++ FF + Sbjct: 1 MAENESGQEKTEQPTPKRLREAKEKGQVPRSRELSTFLVLMAAGGFMTFFGPTLGGQLAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D S ++ L+ R ++P + M+ + + ++ + Sbjct: 61 QTAGRF-DIERDLAYDSSLLLPYLSEQIFMTLRTLLPLFGVLMVAAVLAPILIGGANFSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP +++ +G+KRI+S L+ F K+F K +LV + L +L Sbjct: 120 QAAKPKASKLNPLKGLKRIFSWQGLMEFGKTFAKFVLVAGVAMSVLWTFSDRLLMLGYEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA + + + + +D + +L+M++QE+KDE K++ G P Sbjct: 180 LEQAITHAAQLALGTFVAVSAALILVAAIDAPFQMWNHQKQLRMTRQELKDEYKETDGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + + + +MME +A ++ITNPTHYA+A+ Y + AP LVAKG + +A Sbjct: 240 EVKQKIRQLQQEMAQRRMMEEVPKADVVITNPTHYAVAITYEASRMAAPKLVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R +A EH I E P +AR+++ +N IP + AVA+++ +Y K Sbjct: 300 ASIRAVADEHKIIRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQLK 352 >gi|119897394|ref|YP_932607.1| flagellar biosynthesis protein FlhB [Azoarcus sp. BH72] gi|119669807|emb|CAL93720.1| flagellar biosynthetic protein FlhB [Azoarcus sp. BH72] Length = 381 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 102/352 (28%), Positives = 183/352 (51%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE S +++E A EG P SRE S F + ++ L + Sbjct: 1 MAE-DSDLEKTEPASGRRLEQAREEGQVPQSRELSTFLVTMTGVVTLWLLGEWMAQRLLG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A + D + I+ L L A ++P L ++ + S + V Sbjct: 60 MIRRSFA-FEREMAFDHTLILAELQSLLGGALLTLMPLFLALLVAAVASPIALGGLVFAP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F R++ +G+ R++S++ L +K+ +K +LVG + L + D + Sbjct: 119 KALGPNFGRMNPIQGLGRMFSVHGLAEMVKAILKALLVGGVGAAVLWYYKDHLFDLMVEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + TV ++I + L +LD+ + Q++ +L+M+K+E+K E K+ G+P Sbjct: 179 LEVGMPDFAETVVFTALLITASLGLLALLDVPFQLWQYHKRLRMTKEEVKREAKEQDGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +++ R R +MM A +A +++TNPTH+++AL+Y APV+VAKG+ +A Sbjct: 239 QLKGRIRAMQREMARGRMMAAVPKADVVVTNPTHFSVALKYDAERMGAPVVVAKGRGELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA E+++P+ E P LAR+L+ + AIP Y AVA+++ +Y Sbjct: 299 MKIREIARENDVPLLEAPPLARALYAHCELEQAIPAALYTAVAEVMAYVYQL 350 >gi|90411036|ref|ZP_01219050.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] gi|90328249|gb|EAS44560.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] Length = 376 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE +++K+E A +G S+E + + ++ + L+ ++ G+ + Sbjct: 1 MAESD-GQERTEDATARKLEQAREKGQVARSKELASVAVLVMGAVSLM-WYGEGLGKALA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + S ++ ++ D++ + ++ S + L++ + + Sbjct: 59 EIMTQMFSLSREEIYDLNRLFSIMLTAIWSVVFPLGLVLIVLFTAALIGAAGLGGVSFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ + + V +KS +K++LV + + + Sbjct: 119 EAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVTGVAAYLMYSSLNDFFLLSLEI 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S ++HA + + +++I + + +D+ + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPSNIFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY + AP+++AKG + A Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIITNPEHFSVALRYDPKLDSAPIVIAKGVDHAA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +HNI I P LAR+++ + IP + AVAQ++ I+ K Sbjct: 299 LKIREIANKHNIDIVPAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351 >gi|304438443|ref|ZP_07398383.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368526|gb|EFM22211.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 374 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 180/348 (51%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + S+ S + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFTLKLLWDSIYLSIASYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + Q D +I+ + + + ++ P + M+ G+ Q N ++ Sbjct: 84 FTNLNQSV--DTENIIHIFIGIIVVLAKTAFPVMFAIMLIGLAINFFQVGLTFNTESIEF 141 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G RI+S +LV KSF KI+++G + + E M F+ + + L Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ +++ I + ++D G+ Q LKM+KQE+KDE+KQS G+P IK + Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGK 261 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +I+TNPTHYA+AL Y Q AP++VAKGQ+L+A+++++ Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIVTNPTHYAIALSYQQG-MSAPLVVAKGQDLVAQRIKE 320 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E +PI E LAR+++ V I AIP Y+AVA+++ +Y K Sbjct: 321 IAREARVPIIENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368 >gi|261407965|ref|YP_003244206.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] gi|261284428|gb|ACX66399.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] Length = 362 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S E S S +LA LL F + Sbjct: 14 GEKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYI 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ L + L+ P + + + + +Q +L +K F Sbjct: 74 NRLSMNVTK-DNVMELFGEYGVQILLLLAPLFISIFVIALVANYLQVGFMLTGETLKMKF 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ +G K I+S+ +LV F+KS +K+ ++G ++ +L + + P +I + Sbjct: 133 SKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGPDTIFHF 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + I + + L VLD + + + ++MSKQ+IKDE K+ G+P+IK + + Sbjct: 193 VADITMSLGFKIAIGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPLIKGKIR 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A +IITNPTH+A+A++Y + +AP ++AKGQ+ +A ++++IA Sbjct: 253 ERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMALRIKEIA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH I E LAR+L+++ I +IP ++AVA+++ +Y K Sbjct: 313 KEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 358 >gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B1 str. Okra] gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1 str. Okra] Length = 609 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|187478176|ref|YP_786200.1| flagellar biosynthesis protein FlhB [Bordetella avium 197N] gi|115422762|emb|CAJ49290.1| flagellar biosynthetic protein [Bordetella avium 197N] Length = 380 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+ KTEA S +++E A EG SRE + F +LA + L+ P +Y S Sbjct: 1 MAD-DSDLEKTEAASPRRLEKAREEGQIARSRELTTFL-MLAAGVGGLWLVGPSLYRGLS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + R D + +V A ++P + ++ + ++ V + Sbjct: 59 GVMRDGMGFDPRITHDTTAMVNQAVIGFGQAIWAILPVFGILVVAALLGSVMLGGLVFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ +++ G+KRI+S LV +K+ K +LVG + + + ML + Sbjct: 119 KPLEFKASKLNPLSGLKRIFSSQTLVELIKASAKALLVGGVAGWVIWRYHDEMLGLMHVP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A V I+ + + ++D+ W KL+MSK++++ E K+S G+P Sbjct: 179 PPAALASALKLVVLCCAFIVSSLMLVVLIDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R+ R +MM RA +++TNPTHYA+AL Y ++ AP ++AKG L+A Sbjct: 239 HIKARIRQQQRAAARRRMMSQVPRADVVVTNPTHYAVALSYDESGGGAPTVIAKGTGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ + Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGHEIPAALYTAVAEVLAWVFQLR 351 >gi|83654182|gb|ABC38245.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis E264] Length = 459 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 61 EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 120 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL ++P L L + + + + +++ Sbjct: 121 TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 179 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 180 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 239 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 240 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 299 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 300 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 359 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 360 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 409 >gi|254522000|ref|ZP_05134055.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14] gi|219719591|gb|EED38116.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14] Length = 377 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 174/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSEN++ KTE P+ K++ DA +GN P SRE + A ++ ++ T+ Sbjct: 2 MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGATA 61 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S Q ++ + L L ++ P +L+ ++ + L+ + Sbjct: 62 WMKHAL-SPEQSLRQNPKELFGHFGDLLLQFLLVIAPLVLVCLLASFVAPLVMGGLRWSQ 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+KR+Y + F KS +++ VG + + + T+ I Sbjct: 121 KALLPDINRLNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++L+ + L +D + W KLKM+++E++ E+K+S G+P Sbjct: 181 LETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G + A Sbjct: 241 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPTVVALGVDETA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y + Sbjct: 301 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 353 >gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402 065] Length = 609 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGTNELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 3502] gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A str. Hall] gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC 3502] gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. ATCC 19397] gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A str. Hall] Length = 609 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|326796452|ref|YP_004314272.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea MMB-1] gi|326547216|gb|ADZ92436.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea MMB-1] Length = 378 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 190/353 (53%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE SSKK++DA +GN S++ S + ++ + + +F + Sbjct: 1 MAENEDGTEKTEDASSKKLDDARKKGNVARSKDLSSAALLIVAAMSI-YFTGRILAIDLG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L ++ L D + ++F L ++ +I + + + GI + + Sbjct: 60 NLFHFNFVIERQDLFDKARMIFHLYESAVGVIDSMILLMGVLAVAGIVGSIGIGGLNFSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KRI S+ +LV +KS K++LVG+I T+ + +L + Sbjct: 120 EPLTPKLSKLNPISGLKRIASVQSLVELLKSIAKVLLVGSIATVVIMLYLPELLGLPFES 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + H+ + I + L + + +DI + + + LKM+KQE+KDE KQ+ G+P Sbjct: 180 VGNAVQHSTEVLIWAFIFVSLALVFIAAIDIPFQIWKHSNDLKMTKQEVKDEHKQAEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + ++MM +A +IITNPTH+++AL+Y T +DAPV++AKG + IA Sbjct: 240 QVKGRIRQMQQQMAMNRMMSDVPKADVIITNPTHFSVALKYDTTSSDAPVVLAKGPDFIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A + IP+ + P L R+++K + +P +K VAQL+ ++ K Sbjct: 300 MKIREVANFYEIPVIQSPDLTRAIYKHTEVGEQVPEGLFKVVAQLLAYVFQLK 352 >gi|262276382|ref|ZP_06054191.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] gi|262220190|gb|EEY71506.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] Length = 377 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END +TE + ++ + A +G P SRE + + ++ + L++F ++ + Sbjct: 1 MAEND-GQERTEDATPRRQQQAREKGQVPRSRELASVAVLVVGAVALMWFGESLGNALMA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + T+ ++ D++ + + + LL+ + G+ + Sbjct: 60 MMRKLF-TLTREEIFDVTSLGLIGYGAIFHIFWPITFILLMLFIAGLIGASALGGVSFSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +P ++S +GIKR++ + V +KS +K+ LV + + + Sbjct: 119 EAARPKLSKMSPLQGIKRMFGKQSWVELIKSILKVALVSGVAFYLMWASLNDFYQLSIET 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + LYHA + +++I + + +D+ + Q +LKM+KQEIKDE K++ G P Sbjct: 179 FPTNLYHALDILLNFVLLICCSLLVVVAIDVPFQIWQHNEQLKMTKQEIKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A ++ITNP HY++ALRY + APV+VAKG + +A Sbjct: 239 EVKGRIRMLQREMAQRRMMAEVPSADVVITNPEHYSVALRYDSKMDKAPVVVAKGSDFLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+I I P LAR+++ + IP + A+AQL+ ++ K Sbjct: 299 LKIREIAAEHDITIVPAPPLARAVYYSTELEQQIPDGLFTAIAQLLAYVFQLK 351 >gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4 str. 657] Length = 609 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3 str. Loch Maree] Length = 609 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + IP+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEIPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum NCTC 2916] Length = 609 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAIALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|329929309|ref|ZP_08283062.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5] gi|328936678|gb|EGG33121.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5] Length = 365 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S E S S +LA LL F + Sbjct: 17 GEKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYI 76 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ L + L+ P + + + + +Q +L +K F Sbjct: 77 NRLSMNVTK-DNVMQLFGEYGVQILLLLAPLFISIFVIALVANYLQVGFMLTGETLKMKF 135 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ +G K I+S+ +LV F+KS +K+ ++G ++ +L + + P +I + Sbjct: 136 SKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGPDTIFHF 195 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + I + + L VLD + + + ++MSKQ+IKDE K+ G+P+IK + + Sbjct: 196 VADITMSLGFKIAVGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPLIKGKIR 255 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A +IITNPTH+A+A++Y + +AP ++AKGQ+ +A ++++IA Sbjct: 256 ERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMALRIKEIA 315 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH I E LAR+L+++ I +IP ++AVA+++ +Y K Sbjct: 316 KEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 361 >gi|76581465|gb|ABA50940.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1710b] Length = 470 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 72 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 131 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 132 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 190 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 191 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 250 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P +K Sbjct: 251 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 310 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 311 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 370 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 371 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 420 >gi|121601443|ref|YP_994701.1| flagellar biosynthesis protein FlhB [Burkholderia mallei SAVP1] gi|124383615|ref|YP_001027675.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC 10229] gi|126450428|ref|YP_001082647.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC 10247] gi|238563575|ref|ZP_00438645.2| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse 4] gi|251767891|ref|ZP_02268743.2| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20] gi|254175097|ref|ZP_04881758.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC 10399] gi|254186354|ref|ZP_04892871.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pasteur 52237] gi|254194732|ref|ZP_04901163.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13] gi|254201433|ref|ZP_04907797.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH] gi|254206775|ref|ZP_04913126.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU] gi|254357202|ref|ZP_04973476.1| flagellar biosynthetic protein FlhB [Burkholderia mallei 2002721280] gi|121230253|gb|ABM52771.1| flagellar biosynthetic protein FlhB [Burkholderia mallei SAVP1] gi|124291635|gb|ABN00904.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC 10229] gi|126243298|gb|ABO06391.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC 10247] gi|147747327|gb|EDK54403.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH] gi|147752317|gb|EDK59383.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU] gi|148026266|gb|EDK84351.1| flagellar biosynthetic protein FlhB [Burkholderia mallei 2002721280] gi|157934039|gb|EDO89709.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pasteur 52237] gi|160696142|gb|EDP86112.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC 10399] gi|169651482|gb|EDS84175.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13] gi|238520421|gb|EEP83881.1| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse 4] gi|243061442|gb|EES43628.1| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20] Length = 401 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D + ++ LSL + P L L + + + + +++ Sbjct: 60 MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|90406806|ref|ZP_01214998.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] gi|90312043|gb|EAS40136.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] Length = 379 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ ++E + ++I + +G S+E + S +++ I ++ F Y ++ Sbjct: 1 MAENENGTERSEEATPERIRKSKEKGQVARSKELATASVLISAAIAMMTFGGRLAYELSI 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + L +I L+ + + L + + I + + + Sbjct: 61 MMKRSF-TFERSVLFSPEYIWLHLSTSFYGLAWPMFIILFMLFVISILGSSLLGGMLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P + R+S + G+KR+ + V +KS +K+++V L + +L ++ Sbjct: 120 KALMPKWNRLSPKAGLKRMLGMQAWVELLKSILKVLVVVGAAWWILGATFEHILHLSVSS 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +Y A + + +M+ + + +D+ + ++ +LKM+KQEIKDE + S G P Sbjct: 180 LPGSVYEALDMLLWMFLMLCCSLLIIVAIDVPYQIYKHKEELKMTKQEIKDEYRNSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + KMME A +I+TNPTHY++AL+Y Q AP +VAKG + +A Sbjct: 240 EVKQRIRQLQYEASQRKMMEDVPDADVIVTNPTHYSVALKYEQNGERAPYVVAKGVDFMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A ++ IP+ E P L R+++ IN +P + A+AQ++ IY + Sbjct: 300 LKIREVARDNEIPVMESPPLCRAIYHTTEINEEVPEELFIAIAQILAYIYQLE 352 >gi|323158635|gb|EFZ44649.1| flagellar biosynthetic protein FlhB [Escherichia coli E128010] Length = 382 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V +++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCVLLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|320325130|gb|EFW81199.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. glycinea str. B076] gi|320329389|gb|EFW85382.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 188/353 (53%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ + Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2 str. Kyoto] Length = 609 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|260776470|ref|ZP_05885365.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] gi|260607693|gb|EEX33958.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] Length = 376 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F ++ + Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVIGAIALMWFGESLARALYT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + + S ++ L++ + + ++ Sbjct: 60 VMGRLF-DLSRDEIFDLPKLFDIALGSMGSLLGPLLLILVVLFIAALIGAAGIGGISFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P + +++ G+KR+ + + V +KS +K+ LV + + + Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELLKSILKVTLVSGVAFYLIDAAQEDLFQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMSEVPQADVIVTNPEHFSVALRYKQDTDKAPIVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351 >gi|222147560|ref|YP_002548517.1| flagellar biosynthesis protein FlhB [Agrobacterium vitis S4] gi|221734548|gb|ACM35511.1| flagellar biosynthetic protein [Agrobacterium vitis S4] Length = 361 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 158/350 (45%), Positives = 239/350 (68%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++++ ++KTE+PS KK+ DA +GN PISREA LF++ LA IY +FF G+ ++ Sbjct: 1 MADDEDQESKTESPSEKKMRDAAEQGNLPISREAPLFATTLAFYIYFVFFMPQGVSTLYQ 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ Q + + ++ L HL S + ++ P LLLFM+FG+ Q +P L Sbjct: 61 TLRDLMEKPDQWIIGTGTDVISLFVHLGWSMAAMLGPALLLFMLFGLTQSFAQHLPSFVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P +R+SL GI R++S+ V F KS KII+V I+ +S+ YF LD + ++ Sbjct: 121 DRITPKMERLSLIGGIGRMFSVMGFVEFGKSLFKIIVVAIIMFVSMRGQYFGTLDAMLSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I V+++LI++L LTV+D+GW + WY KL+M++QE+KDE KQS G+P Sbjct: 181 PQIIFVKLSDIVQEMLIIVLFATGLLTVMDLGWQRYNWYQKLRMTRQEVKDEHKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQ+S R + R +MM RAT+IITNPTH+A+ALRY++TE +AP+++AKGQ+LIA Sbjct: 241 VVKARQRSAQRDQARRRMMNNVPRATMIITNPTHFAVALRYVRTEMEAPIVLAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA E+NIPIFE+P LARS+F QV ++S IPP+FYKAVA+++ ++Y Sbjct: 301 LKIREIAEENNIPIFEDPPLARSMFAQVSVDSVIPPIFYKAVAEIVQRLY 350 >gi|190574224|ref|YP_001972069.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia K279a] gi|190012146|emb|CAQ45769.1| putative flagellar biosynthetic protein FlhB [Stenotrophomonas maltophilia K279a] Length = 376 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSEN++ KTE P+ K++ DA +GN P SRE + A ++ ++ ++ Sbjct: 1 MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S Q ++ + L L ++ P +L+ ++ + L+ + Sbjct: 61 WMKHAL-SPEQGLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLVMGGLRWSQ 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+KR+Y + F KS +++ VG + + + T+ I Sbjct: 120 KALLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++L+ + L +D + W KLKM+++E++ E+K+S G+P Sbjct: 180 LETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G + A Sbjct: 240 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGTMNAPTVVALGVDETA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y + Sbjct: 300 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 352 >gi|254505032|ref|ZP_05117183.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] gi|222441103|gb|EEE47782.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] Length = 358 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 126/353 (35%), Positives = 208/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+KTE P+ KKI+DA+ +GN P+S+EA + + ++ L+ F + G+ + S Sbjct: 1 MSEEADKDSKTEEPTEKKIQDAIEKGNTPVSKEAPVLAMLIGALLIGGFAITSGVRQLVS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ LL + L + + + L LS+ + P + + + G+ S +Q P + Sbjct: 61 DMAHLLDVSGGLDLGNSADALMLSHSLSIKVGLFLAPIIAILSVSGLASAFLQNKPSIVP 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N +KP ++SL++G RI+ V F+K+ K V I+ + +++ + + Sbjct: 121 NRIKPELSKLSLKKGWSRIFGAQGFVEFLKAVFKFSTVSAIVYAQFRAHESDLINAMFTD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ +++ + + L +DI WS W L+M+KQE+KDE KQ G+P Sbjct: 181 PSALPEMILQISLRLISGVCIVTILLVTVDILWSRSHWRKNLRMTKQEVKDEHKQMEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K RQ+S+AR R R++MM A +AT+++ NPTH+A+ALRY +N APV+VAKGQ+LIA Sbjct: 241 IVKARQRSLARDRARNRMMSAVPQATLVVANPTHFAVALRYDGEKNPAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA ++IP+ E+ LARSL+ + IPP FY+AVA++I +Y +K Sbjct: 301 LKIREIAETNDIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICFVYSRK 353 >gi|291484192|dbj|BAI85267.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. natto BEST195] Length = 360 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P Sbjct: 72 ESLTMKLSE-SNVHTLFVSLLKDMGIILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|291617775|ref|YP_003520517.1| FlhB [Pantoea ananatis LMG 20103] gi|291152805|gb|ADD77389.1| FlhB [Pantoea ananatis LMG 20103] Length = 397 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 187/350 (53%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + KTE+P++ ++E A EG P SRE + +LA ++ L + + + + + Sbjct: 17 ENSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWVGGAMMAHRLAAMVS 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + D I+ + +L + A ++P L ++ I S ++ V++ + Sbjct: 77 TGLR-FDHAMVTDDKIIIAHVGNLIMQAIAALLPLLGGLVLVAIASPMLLGGVVISGKSI 135 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K F +++ G+KR+++ K +K ILVG + + ++ ML I+ +P + Sbjct: 136 KVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVGCVAGWYVWSHWPDMLRLIAESPTT 195 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L H + +++L + + D+ W + + KL+MS+QEI+DE KQ G+P +K Sbjct: 196 ALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHFKKLRMSRQEIRDEHKQQEGDPHVK 255 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA ++ Sbjct: 256 GRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIAKGAGDIALRI 315 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++ EH IP+ E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 316 RELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYGAVAEVLAWVWQLR 365 >gi|299534768|ref|ZP_07048098.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1] gi|298729856|gb|EFI70401.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1] Length = 362 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 183/346 (52%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +DA +G S++ S +L I+L FF + + Sbjct: 14 GEKTEKATPKKRQDARKKGQVVKSQDISSAIVMLMVFIFLFFFAGSLRDELLAFFRQTFI 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + I ++ L T + + +++P + + + + +Q + L +K Sbjct: 74 HNIRIESLTIDSVMHLFTETLIQMAFIIVPIMAIAFVGALAGNFMQFGFLFTLEPMKFDL 133 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K++ +G+K+I+S+ +V +KS +KI +G++ TI + N +L +P L Sbjct: 134 KKMDPIKGLKKIFSVKAIVELIKSVLKIGFIGSVTTIIIWSNLPEVLALSFKSPWMTLIT 193 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + I L + ++VLD + H++ LKMSKQ+IKDE K S G+P+IK++ K Sbjct: 194 VGKLVGIMGIAASLVLLCVSVLDWMYQKHEYEKNLKMSKQDIKDEYKNSEGDPLIKSKIK 253 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM A ++ITNPTHYA+AL+Y + DAP ++AKG + IA+K++ IA Sbjct: 254 QRQREMAMRRMMSEVPSADVVITNPTHYAIALKYNEDSMDAPRVIAKGTDFIAQKIKLIA 313 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ + E LAR+++ QV I +P F+KAVA+++ +Y K Sbjct: 314 KEHDVIMVENRPLARAMYDQVEIGDQVPEEFFKAVAEILAYVYRIK 359 >gi|119476304|ref|ZP_01616655.1| Flagellar biosynthesis pathway, component FlhB [marine gamma proteobacterium HTCC2143] gi|119450168|gb|EAW31403.1| Flagellar biosynthesis pathway, component FlhB [marine gamma proteobacterium HTCC2143] Length = 386 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END KTE + K++E + EG S+E +LA + L+ + ++ Sbjct: 1 MAENDNGQEKTEEATPKRLEKSREEGQVARSKELGTALILLAGVGGLIVYGGDFGQALMG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + D S ++ L + S+ ++P L + + + +L+ Sbjct: 61 VMR-FNFSMPRDVAFDESLMLRHLGNTSIFIIETMLPFFALIAVAAVVGPVALGGFILSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+ +GIKRI+S+ +LV +KS K+++VG++ +L +LD A Sbjct: 120 KALVPKLTRLDPIKGIKRIFSLTSLVELLKSICKVLVVGSMAYFTLRNAEMDLLDLAHAE 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V ++ + + + ++D+ + KLKM+ QE+KDE+K S G P Sbjct: 180 LQPAIVQMLTIVAWSVLAVSASMILIVLIDVPFQIFDHSKKLKMTLQEVKDEMKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MMEA A ++ITNP H+++AL+Y AP+LVAKG + +A Sbjct: 240 EVKGRIRQLQREMAQRRMMEAVPEADVVITNPEHFSIALKYDVEGGGAPILVAKGVDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +++ I P LAR+++ I+ IP Y AVAQ++ ++ + Sbjct: 300 IKIREIANANDVMILAAPPLARAIYFTTEIDDEIPNTLYLAVAQVLAYVFQLR 352 >gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. Langeland] gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F str. 230613] Length = 609 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 261 ASEEKTEDATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606 >gi|28869179|ref|NP_791798.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato str. DC3000] gi|213967544|ref|ZP_03395692.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato T1] gi|301382881|ref|ZP_07231299.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tomato Max13] gi|302061091|ref|ZP_07252632.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tomato K40] gi|302131293|ref|ZP_07257283.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852419|gb|AAO55493.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato str. DC3000] gi|213927845|gb|EEB61392.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. tomato T1] gi|331016989|gb|EGH97045.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 378 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLL-MFGAGIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL + ++ + D S++ L L A +++P L+ + + ++ + + Sbjct: 60 DLMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L++ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|266618907|ref|ZP_06111845.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf] gi|263528671|gb|EEZ28380.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf] Length = 413 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + +K DA +G S+E +L ++LAC + L+ G + + Sbjct: 65 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 124 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L + +++ L L ++V+P L M FGI + +Q + +KP Sbjct: 125 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 183 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FK+++ G KR++S+ ++ +K I +VG + L +NY +L+ + P ++ Sbjct: 184 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 243 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + V D + +Q+ LKM+KQE+K+E KQ G+P IK++ Sbjct: 244 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 303 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+ALRY + + AP +VAKG + +A K++ Sbjct: 304 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 362 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + +P+ E LAR ++++V I+S +P Y+AVA+++ +Y K Sbjct: 363 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 410 >gi|16078701|ref|NP_389520.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. 168] gi|221309516|ref|ZP_03591363.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. 168] gi|221313840|ref|ZP_03595645.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318763|ref|ZP_03600057.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. JH642] gi|221323035|ref|ZP_03604329.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. subtilis str. SMY] gi|321315405|ref|YP_004207692.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5] gi|7404374|sp|P35538|FLHB_BACSU RecName: Full=Flagellar biosynthetic protein flhB gi|2634010|emb|CAB13511.1| component of the flagellar export machinery [Bacillus subtilis subsp. subtilis str. 168] gi|320021679|gb|ADV96665.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5] Length = 360 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P Sbjct: 72 ESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|126441654|ref|YP_001060838.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668] gi|126221147|gb|ABN84653.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 668] Length = 401 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D + ++ LSL + P L L + + + + +++ Sbjct: 60 MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALATPMAMGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|71736663|ref|YP_275525.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484900|ref|ZP_05638941.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651607|ref|ZP_06482950.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aesculi str. 2250] gi|298487818|ref|ZP_07005858.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557216|gb|AAZ36427.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157543|gb|EFH98623.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330889044|gb|EGH21705.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. mori str. 301020] gi|330986505|gb|EGH84608.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011080|gb|EGH91136.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 378 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|188991600|ref|YP_001903610.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. campestris str. B100] gi|167733360|emb|CAP51561.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 376 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI S Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGTGVFALMLMARGIGDGAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++ Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA A +++ NPTHYA+AL+Y + APV+VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y + Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|126454601|ref|YP_001068145.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 1106a] gi|134281603|ref|ZP_01768311.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305] gi|167920930|ref|ZP_02508021.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei BCC215] gi|217423909|ref|ZP_03455409.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576] gi|226193093|ref|ZP_03788703.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pakistan 9] gi|237814235|ref|YP_002898686.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei MSHR346] gi|242317683|ref|ZP_04816699.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1106b] gi|254183876|ref|ZP_04890467.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] gi|254298802|ref|ZP_04966253.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] gi|126228243|gb|ABN91783.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1106a] gi|134247270|gb|EBA47356.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305] gi|157808470|gb|EDO85640.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] gi|184214408|gb|EDU11451.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] gi|217392972|gb|EEC32994.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576] gi|225934693|gb|EEH30670.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei Pakistan 9] gi|237506461|gb|ACQ98779.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei MSHR346] gi|242140922|gb|EES27324.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1106b] Length = 401 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D + ++ LSL + P L L + + + + +++ Sbjct: 60 MLHAAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|292669764|ref|ZP_06603190.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541] gi|292648561|gb|EFF66533.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541] Length = 374 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 177/348 (50%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + S+ + + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFSLKLLWDSIYLSIATYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 ++ Q D +I+ + + + ++ P +L M+ G+ Q + ++ Sbjct: 84 FSNLNQ--TVDTENIIRIFIGIIIVLAKTAFPIMLFIMVIGLAINFFQVGLNFSAESIEF 141 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G RI+S LV KSF KII++G + + E M F+ + + L Sbjct: 142 KLDKLNPINGFGRIFSKRALVELAKSFFKIIVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ +++ I + D G+ Q LKM+KQE+KDE+KQ+ G+P IK + Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMAFCDYGYQRWQTTQDLKMTKQEVKDEMKQTEGDPQIKGK 261 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +IITNPTHYA+AL Y Q AP +VAKGQ+L+A+++++ Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHYAVALSYEQG-MVAPTVVAKGQDLVAQRIKE 320 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I + +PI E LAR+L+ V + A+P Y+AVA+++ +Y K Sbjct: 321 IGRDARVPIIENKPLARTLYAAVQVGDAVPHELYQAVAEVLAYVYRLK 368 >gi|15964403|ref|NP_384756.1| flagellar biosynthesis protein FlhB [Sinorhizobium meliloti 1021] gi|307311545|ref|ZP_07591186.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C] gi|307318900|ref|ZP_07598331.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83] gi|17380369|sp|O54243|FLHB_RHIME RecName: Full=Flagellar biosynthetic protein flhB gi|15073580|emb|CAC45222.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium meliloti 1021] gi|306895314|gb|EFN26069.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83] gi|306899562|gb|EFN30191.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C] Length = 360 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 156/350 (44%), Positives = 243/350 (69%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+KTEAPS KKI DA +GN P SRE + F+S LA I+++FF S G ++ Sbjct: 1 MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +L+ + V L++H+ L + LV+P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVFILLILFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G KRIY + LV F KS KII+V ++ + L +YF LD + ++ Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I +++++I++L ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P Sbjct: 181 PVTIFTTMISDLKQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|197285519|ref|YP_002151391.1| flagellar biosynthesis protein FlhB [Proteus mirabilis HI4320] gi|227356013|ref|ZP_03840404.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] gi|194683006|emb|CAR43467.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|227163790|gb|EEI48698.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] Length = 382 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 174/353 (49%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A +G S+E S IL + LL+ I Sbjct: 1 MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKELSSVLMILGG-VSLLWMSGRFITRELY 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + + ++ L A + P L ++ IG + + Sbjct: 59 AMLTEGFTFNHHIIGNENLLIPRFASLMKQAVFALSPVFLGLVLVAIGGSAVLGGINFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+ + G+KRI+S+N L K+ +K + VG T+ L N+ +L I+ Sbjct: 119 KSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSLFVGLAATVFLWHNWNDILHLITLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P S L +A + + + + + + DI + KL+M++QEIKDE KQ G+P Sbjct: 179 PLSALANAMQLLIFAVYIAVFMLIPMVAFDIIFQIRSHLKKLRMTRQEIKDEFKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG IA Sbjct: 239 QLKARIRQQQHEMSRRRMMADVPKADVIVTNPTHYAVALQYN-DKMVAPKVLAKGAGAIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++I EH IP+ E P LAR+L++ I AIP Y AVA+++ +Y + Sbjct: 298 LKIKEIGAEHRIPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLR 350 >gi|330876032|gb|EGH10181.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 378 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLL-MFGTGIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ + D S++ L L A +++P L+ + + ++ + + Sbjct: 60 ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L++ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|395390|emb|CAA52218.1| flagellar biosynthetic protein [Bacillus subtilis] Length = 360 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSSDVNSAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + KL + S++ L L ++ P LL+ ++ G+ S +Q + + ++P Sbjct: 72 ESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRIYS+ +V +KS +KI++VG L +Y +L P L Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|308273532|emb|CBX30134.1| Flagellar biosynthetic protein flhB [uncultured Desulfobacterium sp.] Length = 356 Score = 367 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 192/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +A KTE P+ KK ED +G S+E S + + L + + S + V Sbjct: 1 MAE-EASGEKTEKPTPKKREDIRKKGEVAKSKELSSVVVLFSGLFAMGIYGSFMLSKVQE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LL++ T L I ++ HL +S ++ P L + S + Q +++ Sbjct: 60 ITKSLLSNPTITDL-TIHGVMEFSRHLIISFVVILAPLLAAVFAGAVLSNIAQVGFMVSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F +++ +G+KR+ S+ +++ KS VK+I+VG +++T + Sbjct: 119 ELIKPKFSKLNPFKGLKRLVSMQSVMELFKSMVKLIIVGATAYLTITHEMDNVSMLGELE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 SI ++ F T + + + + L V+D + ++ ++KMSKQEIKDE K++ G+P Sbjct: 179 LVSIFHYIFATFYNIFLKCSIAMLVLVVIDYAYQRWEFEKRIKMSKQEIKDEYKKTEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+R ++I R +MM+ +A +IITNPTH+A+A++Y E +AP ++AKG IA Sbjct: 239 QVKSRIRAIQMEMARKRMMQDVPKADVIITNPTHFAVAIKYNGLEMNAPKVIAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ +A +HNIP+ E LAR+L+K V I IP Y+AVA ++ IY K Sbjct: 299 ARIKSLAADHNIPVVENKELARNLYKLVEIGREIPADLYQAVAGVLAYIYKLK 351 >gi|289629017|ref|ZP_06461971.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866461|gb|EGH01170.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 378 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLLVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|212709483|ref|ZP_03317611.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM 30120] gi|212687821|gb|EEB47349.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM 30120] Length = 383 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++ KTE P+ K + A ++G S+E S +LA + LL+ + + Sbjct: 1 MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAG-VSLLWLSGGHLATQLR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L++ ++ L + A ++P + + GI + + + N Sbjct: 59 QIMRQGFIFDGHYLQNTGLMLSYLGRVVSEALFALLPIIGGLALVGISASSLVGGLLFNS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+++ +G+KRI+S+N L K+ +K + VG +I L +++ ++L + Sbjct: 119 KLIKFDLKKLNPIKGLKRIFSMNALSELFKAILKCVFVGLGASIFLWQSWPSLLHLVMEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P Sbjct: 179 PTTALANALEKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP ++AKG +IA Sbjct: 239 HIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y + Sbjct: 299 QRIKEIGAEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351 >gi|308068671|ref|YP_003870276.1| flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681] gi|305857950|gb|ADM69738.1| Flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681] Length = 370 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 175/347 (50%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK +DA +G S E +L L+ F + Sbjct: 21 SGEKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIF 80 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + ++ + + ++ + ++ P + ++ GI + +Q +L + P Sbjct: 81 VNRLSMEV-TPNTTMLMMGEYGVQILIMLAPIFIGAIVIGIVANYMQIGFLLTGEGITPK 139 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ +G K I+S+ +LV F+KS +K+ ++G ++ L + + + +L Sbjct: 140 FSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKTDLPKLAEMSGDQMLS 199 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ + I + + L VLD + ++ LKMSKQ+IKDE K+ G+P+IK + Sbjct: 200 FTASLTMELGLKIGVVLFVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKI 259 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ A +IITNPTH+A+AL+Y +E +AP ++AKGQ+ +A ++++I Sbjct: 260 RERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALRIKEI 319 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++ + E LAR+LF++ I AIP ++AVA+++ +Y K Sbjct: 320 AKQNGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366 >gi|27365293|ref|NP_760821.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus CMCP6] gi|320155677|ref|YP_004188056.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O] gi|27361440|gb|AAO10348.1| flagellar biosynthetic protein FlhB [Vibrio vulnificus CMCP6] gi|319930989|gb|ADV85853.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O] Length = 376 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D S + + + + ++ L + ++ Sbjct: 60 AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGISFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LV + + + ++ Sbjct: 119 EAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALVTGVAIYLIQASQEDLIQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +I+TNP H+++ALRY Q + APV+VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPVVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351 >gi|254258153|ref|ZP_04949207.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1710a] gi|254216842|gb|EET06226.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1710a] Length = 401 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D + ++ LSL + P L L + + + + +++ Sbjct: 60 MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 >gi|268589991|ref|ZP_06124212.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131] gi|291314710|gb|EFE55163.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131] Length = 383 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++ KTE P+ K + A ++G S+E S +LA + LL+ + + Sbjct: 1 MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAG-VSLLWLSGGHLAAQLR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L++ ++ L + A ++P + + GI + + V N Sbjct: 59 QITRQGFIFDGHYLQNTGLMISYLGRVVSEALFALLPVIGGLALVGISASSLVGGLVFNS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+++ +G+KRI+S+N L K+ +K + VG I L +++ ++L + + Sbjct: 119 KLIKFDLKKLNPIKGLKRIFSMNALSELFKAVLKSLFVGLGAFIFLWQSWPSLLHLVMES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P Sbjct: 179 PVTALSNALQKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP ++AKG ++A Sbjct: 239 QIKAKIRQQQRAIARNRMMADVPNADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y + Sbjct: 299 QRIKEIGEEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351 >gi|194365643|ref|YP_002028253.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia R551-3] gi|194348447|gb|ACF51570.1| flagellar biosynthetic protein FlhB [Stenotrophomonas maltophilia R551-3] Length = 376 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+++ KTE P+ K++ DA +GN P SRE + A ++ ++ ++ Sbjct: 1 MSEDESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S Q ++ + L L ++ P +L+ ++ + L+ + Sbjct: 61 WMKHAL-SPEQSLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLLMGGLRWSQ 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+KR+Y + F KS +++ VG + + + T+ I Sbjct: 120 KAMLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++L+ + L +D + W KLKM+++E++ E+K+S G+P Sbjct: 180 LETAITDGLSFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA A +++ NPTHYA+AL+Y +AP +VA G + A Sbjct: 240 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPKVVALGVDETA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A + + I P LAR+L+++ + IP Y AVAQ++ +Y + Sbjct: 300 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 352 >gi|310767884|gb|ADP12834.1| Flagellar biosynthesis protein FlhB [Erwinia sp. Ejp617] Length = 383 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 188/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ + KTE+P++ ++E A EG P SRE + ++ L L + + Sbjct: 1 MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLMTGLSILWVGGEWMGRKMGA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D S ++ L+ ++ L A V+P + ++ I + ++ VL+ Sbjct: 60 LLADGLV-FNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ +++S + +K+ +K LVG + + + ++ ML ++ + Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSAQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPIVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ + IP+ E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQLR 351 >gi|307264886|ref|ZP_07546448.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii Rt8.B1] gi|306920144|gb|EFN50356.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii Rt8.B1] Length = 363 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 186/348 (53%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|163856421|ref|YP_001630719.1| flagellar biosynthesis protein FlhB [Bordetella petrii DSM 12804] gi|163260149|emb|CAP42450.1| flagellar biosynthesis protein FlhB [Bordetella petrii] Length = 379 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 182/353 (51%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ KTEA S +++E A EG SRE F + A + L S +T Sbjct: 1 MAD-ESDLEKTEAASPRRLEKAREEGQIARSRELGTFLLLAAGVGGLWLSGSMLYRGLTG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D +V + A LV+P + M + + ++ V + Sbjct: 60 VLRNGLGFDARIGR-DPGIMVAQAVDGAGQALLLVLPIFGVLMAVAVLASVVLGGFVFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F ++SL G+KR+ S +V +K+ K +LVG + + + ML + A Sbjct: 119 KPLQPDFAKLSLFSGLKRMVSAQTVVELLKAVAKALLVGGVAVAVIGGHRDEMLALMHAA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A V +I+ + + +LD+ W KL+MSK++++ E K+S G+P Sbjct: 179 PTEALVKALTLVALCAALIVASLGIIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + RS R +MM RA +++TNPTHYA+ALRY + + AP +VAKG L+A Sbjct: 239 HIKARIRQQQRSMARRRMMSEVPRADVVVTNPTHYAVALRYAEGQA-APRVVAKGTGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A H +P+ + P LAR+L++ V + IP Y AVA+++ ++ + Sbjct: 298 ARIRELAAGHRVPLLQAPPLARALYQHVELGQEIPAALYTAVAEVLAWVFQLR 350 >gi|167620815|ref|ZP_02389446.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis Bt4] Length = 401 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D + ++ LSL ++P L L + + + + +++ Sbjct: 60 MLHTAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351 >gi|163794129|ref|ZP_02188102.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199] gi|159180743|gb|EDP65262.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199] Length = 358 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 198/353 (56%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ KTE P+ KK+ DA +G S+E + F+S+LA + + S Sbjct: 1 MSDSQDDSQKTEEPTGKKLGDARKKGQIAQSKEVTNFASLLALTFAVTILAPYMAIQLYS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + V++ A ++ D +L L + + P L M+ G+ + L Q + Sbjct: 61 SMAVVIEHAAVARI-DAGSTSEILMGLVIDTFLALAPTLGTVMVLGVAATLGQSGILFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P +++S G KR++S+ ++V F+K +K+ +V I + ++ + ++ + Sbjct: 120 DPIMPKLEKLSPLAGFKRLFSLKSIVEFIKGIIKLAIVAFIAYVLMSPELDRAEELLTMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L V ++++ +L F+A + + D + ++ Y +L+MS+Q+I+DE KQ+ G+P Sbjct: 180 LIEVLKEIQTLVIRLMMGVLAFMAVVAIADYIYQRYEHYKQLRMSRQDIRDEHKQAEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I R R +MM A +A ++ITNPTH+A+AL+Y + APV+VAKG + +A Sbjct: 240 QIKARLRQIRADRARRRMMAAVPKADVVITNPTHFAVALQYDTSAMAAPVVVAKGSDAVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH +PI E P LAR+LF V I+ IP +YKAVAQ+I +Y K Sbjct: 300 FRIREVAKEHKVPIVENPPLARALFASVEIDEQIPETYYKAVAQVISYVYRLK 352 >gi|21231358|ref|NP_637275.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768589|ref|YP_243351.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. campestris str. 8004] gi|21113019|gb|AAM41199.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573921|gb|AAY49331.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 376 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI S Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGTGVFALMLMARGIGDGAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++ Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNRP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA A +++ NPTHYA+AL+Y + APV+VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y + Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|333004498|gb|EGK24027.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-272] gi|333017872|gb|EGK37178.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-227] Length = 397 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 187/353 (52%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKRI+S +K+ +K ILVG++ L ++ M+ ++ + Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+ NP HY++AL+Y + + AP +VAKG L+ Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPNHYSVALQYDENKMSAPKVVAKGAGLVV 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350 >gi|37680652|ref|NP_935261.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus YJ016] gi|37199401|dbj|BAC95232.1| flagellar biosynthesis pathway, component FlhB [Vibrio vulnificus YJ016] Length = 376 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D S + + + + ++ L + ++ Sbjct: 60 AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGISFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LV + + + ++ Sbjct: 119 EAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALVTGVAIYLIQASQEDLIQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +I+TNP H+++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351 >gi|320529415|ref|ZP_08030503.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399] gi|320138381|gb|EFW30275.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399] Length = 374 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 179/348 (51%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + ++ S + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDSIYLAIASYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 A+ Q D +IV L + ++ +P +L M+ G+ Q N ++ Sbjct: 84 FANLNQPV--DTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQVGLNFNTEAIEF 141 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G RI+S +LV KSF KI+++G + + E M F+ + + L Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFMFFDLTTSL 201 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ +++ I + V D G+ Q LKM+KQE+KDE+KQ+ G+P IK + Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTEGDPQIKGK 261 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +IITNPTHYA+AL Y + AP ++AKGQ+L+A+++++ Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAYEKG-MVAPTVLAKGQDLVAQRIKE 320 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + E +PI E LAR+L+ V + A+P Y+AVA+++ +Y K Sbjct: 321 LGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368 >gi|315127306|ref|YP_004069309.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913] gi|315015820|gb|ADT69158.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913] Length = 376 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 167/353 (47%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ KK++DA +G S+E ++ I LL + + Sbjct: 1 MAE-DSGQEKTEEPTPKKVDDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +L S + + D + + + ++ + +L+ ++ + + Sbjct: 60 IMGRML-SLNRNETYDTTKMFAVWGEVADVLLFPMSMFVLIIVLAAFIGNTMLGGFNFSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S +G R++ + +KS +K LV + + +L + Sbjct: 119 QAAAPKASKMSPMKGFTRMFGPQAAIELLKSLLKFGLVAAFAIFLINTFFDEILHLSIES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA + + + + + + +D + + +LKM+ QE+KDE K S G+P Sbjct: 179 APGNIVHALEILAWMFLGMSCTLIIIAAIDAPFQSYSHNKQLKMTMQEVKDEYKNSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AKG + +A Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAKGVDELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++RKIA + +PI E P+L R+L+ + IP + AVAQ++ ++ K Sbjct: 299 MQIRKIALGNEVPIVESPTLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351 >gi|330720472|gb|EGG98776.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC2047] Length = 378 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 184/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D+ KTE + K++EDA +G+ P S+E + + +L LL F GI + S Sbjct: 1 MAESDSGQEKTEEATPKRLEDAKKKGDIPRSKELNTTAILLGGTGALLAFGG-GISAGLS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ ++ + D ++ L + +IP ++ M+ I + V++ Sbjct: 60 NMMSANFRFSRDDIFDPQVMLIHLGQSMAESMMALIPFFIVVMLAAIIGPIALGGWVMSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +R+S GIKR+++ L+ +K+ K +LV T+ + L +L + Sbjct: 120 KSLAPKGERISPLAGIKRMFAKQALMELLKTIAKFLLVATLSLVILDFMTNDILAIAKED 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H V ++ + + ++++D+ + KLKM+ QE+KDE+K + G P Sbjct: 180 TIPAMAHTLRIVGWSVLAMSCTMILISIIDVPFQISSHAKKLKMTMQEVKDEMKNTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+R + + + +MM A A ++ITNP HYA+AL+Y AP+LVAKG + IA Sbjct: 240 EVKSRIRQLQYDMAQGRMMSAVPEADVVITNPEHYAVALKYNSDNMGAPLLVAKGADHIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+ E P LAR++F + IP Y AVAQ++ ++ + Sbjct: 300 FKIREIAKAHDIPVLEAPPLARAVFYSTELEQEIPAGLYVAVAQVLAYVFQLQ 352 >gi|30250406|ref|NP_842476.1| flagellar biosynthesis protein FlhB [Nitrosomonas europaea ATCC 19718] gi|30181201|emb|CAD86399.1| FlhB HrpN YscU SpaS Family [Nitrosomonas europaea ATCC 19718] Length = 376 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 186/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +TE S +++E A EG S+E + F+ ++A L S I +++ Sbjct: 1 MAD-DNDLERTEPASPRRLEKAREEGQVARSQELTTFTLLIAASSSLWVIGSIIIQKLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q + + ++ L L+L + P L ++ + + ++ + + Sbjct: 60 VLESGLR-MEQEVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIIALVAPMLLSGWLFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P KR++ G+KRI+S L+ +K+ K++++G + + + +LD + Sbjct: 119 KALFPDLKRLNPVNGLKRIFSSRGLIELVKAIAKVMVIGGVAAGIIWSHKQDVLDLVGMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++I+ + + V+D+ + +L+MS+++++ E K+ G+P Sbjct: 179 LDTSLISMSRLIGLTFMLIVGAMLLIVVIDVPFQIWNHARQLRMSREDLRKEAKEDEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +++ R R +MM +A +++TNPTHYA+AL+Y AP +VAKG LIA Sbjct: 239 QVKGRIRNMQRQIARRRMMAEVPKADVVVTNPTHYAVALKYQDRSMRAPKVVAKGTQLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH+IP+ E P LAR+L+ V +++ IP Y AVA ++ I+ K Sbjct: 299 ARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYIFQLK 351 >gi|313896030|ref|ZP_07829584.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137 str. F0430] gi|312975455|gb|EFR40916.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137 str. F0430] Length = 374 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 179/348 (51%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P++KK DA +G S+E + +L L + ++ S + Sbjct: 24 AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDSIYLAIASYTTYV 83 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 A+ Q D +IV L + ++ +P +L M+ G+ Q N ++ Sbjct: 84 FANLNQPV--DTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQVGLNFNTEAIEF 141 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G RI+S +LV KSF KI+++G + + E M F+ + + L Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFMFFDLTTSL 201 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ +++ I + V D G+ Q LKM+KQE+KDE+KQ+ G+P IK + Sbjct: 202 ALVAEIIFRMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTEGDPQIKGK 261 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +IITNPTHYA+AL Y + AP ++AKGQ+L+A+++++ Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAYEKG-MVAPTVLAKGQDLVAQRIKE 320 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + E +PI E LAR+L+ V + A+P Y+AVA+++ +Y K Sbjct: 321 LGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368 >gi|197334476|ref|YP_002156665.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11] gi|197315966|gb|ACH65413.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11] Length = 376 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE +SK+++ A ++G S+E + S ++ + L++F ++ S Sbjct: 1 MAESD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAVALMWFGEDVARALFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S ++ ++ D + ++ ++ ++ V L+ + + + Sbjct: 60 VMERFF-SISREEIYDTNKLLEIVGGALIALVFPVFLILITLFVAALAGAAGLGGISFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F +++ GIKR++ + + V +KS +K+ LVG + + + + Sbjct: 119 EAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQLSLDT 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P Sbjct: 179 YPANIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +++TNP HY++ALRY Q+++ AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVVAKGVDHVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ K Sbjct: 299 MKIREIAREHNIYILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQMK 351 >gi|259908202|ref|YP_002648558.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96] gi|224963824|emb|CAX55326.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96] gi|283478130|emb|CAY74046.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163] Length = 383 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ + KTE+P++ ++E A EG P SRE + ++ L L + + Sbjct: 1 MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLMTGLSILWVGGEWMGRKMGA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D S ++ L+ ++ L A V+P + ++ I + ++ V++ Sbjct: 60 LLADGLV-FNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ +++S+ + +K+ +K LVG + + + ++ ML ++ + Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSVQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPMVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP +VAKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ + IP+ E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQLR 351 >gi|331269330|ref|YP_004395822.1| flagellar biosynthetic protein FlhB [Clostridium botulinum BKT015925] gi|329125880|gb|AEB75825.1| flagellar biosynthetic protein FlhB [Clostridium botulinum BKT015925] Length = 594 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 184/348 (52%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G P S+E S +L I LL S D+ Sbjct: 245 ASDDKTEEATPHKLSEARKKGQVPKSKEVSSAIILLTSTIILLTLGEYVANSFKKDIIEF 304 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + +L ++S ++ ++ + + +P ++ M+ GIG+ L+Q + + +KP Sbjct: 305 FTNYLNIEL-NVSSLISIIVTILWRFMIVFLPVVVPLMVMGIGANLLQTGYINSKEPLKP 363 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G K+++S+ ++ +K I ++G + L N+ +L + I+ Sbjct: 364 QLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFVGYGFLKSNFRKVLSMTTLRFPVII 423 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + L + + + D + Q+ +KMSKQE+K+E KQ G+P +K + Sbjct: 424 TSFLKLTTNIFFRVSLVMIAIALTDFIYQKFQFKRDMKMSKQEVKEEFKQMEGDPQVKGK 483 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ A+++ITNPTH A+AL+Y E++AP+LVAKG + IA K+++ Sbjct: 484 IKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGEDNAPMLVAKGSDYIAIKIKQ 543 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+++PI E LAR +FK+V I + IP Y+AVA+++ +Y K Sbjct: 544 IAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLK 591 >gi|86146123|ref|ZP_01064449.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218708836|ref|YP_002416457.1| flagellar biosynthesis protein FlhB [Vibrio splendidus LGP32] gi|85836070|gb|EAQ54202.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218321855|emb|CAV17833.1| Flagellar biosynthetic protein flhB [Vibrio splendidus LGP32] Length = 376 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + K+++ A +G S+E + S ++ I L++F ++ Sbjct: 1 MAESD-GQERTEDATPKRLQQAKEKGQVARSKELASASVLIVGAIALMWFGESMAKALFE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D + ++ + ++ + L+ + + ++ Sbjct: 60 TMQRLF-SLSREEVFDTTKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGINFSM 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LV + + + ++ Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMEV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQEIKDE K + G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEHKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q ++ APV+VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPVVVAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREIARENDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351 >gi|213022149|ref|ZP_03336596.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 336 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 180/338 (53%), Gaps = 2/338 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 ++R+I EH +P E P LAR+L++ I IP Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQL 336 >gi|77457779|ref|YP_347284.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf0-1] gi|77381782|gb|ABA73295.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens Pf0-1] Length = 379 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 175/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + + +LA LL F + Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTLAIMLAGSAALLIFGGMLAQELMD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + ++ + D + L L A + P ++ ++ + + Sbjct: 61 LMRQNF-TLSREVIMDERSMATFLMSSGLQALLAIQPIMITLLLAAFLGPIALGGWLFAA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S+ +V +K+ K ++ + + L + +L Sbjct: 120 GSLAPKFSRMNPAAGLKRMFSMKAVVELLKALAKFLITLGVALVVLNSDIDDLLRIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + +D+ + KLKM+KQE++DE K G P Sbjct: 180 LDRAIIHSLQLVGWSSLWLACGLIIIAAVDVPVQIWESIKKLKMTKQEVRDEHKDQEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A A ++ITNPTHYA+AL+Y + AP+L+AKG + +A Sbjct: 240 EVKQRIRQLQREMSQRRMMAAIPDADVVITNPTHYAVALKYDAEKGGAPMLLAKGSDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +N+ + E P+LARS++ + IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAVANNVMLLESPALARSIYYSTELEEEIPGGLYLAVAQVLAYVYQIR 352 >gi|163758003|ref|ZP_02165091.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43] gi|162284292|gb|EDQ34575.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43] Length = 363 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 233/353 (66%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + D+KTE P+ KK+ DA+++GN P SRE +F+SIL L++L+FF T+ Sbjct: 1 MAEGEDKDSKTEEPTEKKLRDAIDKGNIPFSREVPIFASILGTLLFLVFFLPSAASRFTN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + +LE V L L + A +++P L M FGI + ++Q +P L Sbjct: 61 SLRDLFEQSDDWRLETGGDAVALFQSLFIEAGVVMVPAFALLMGFGIAASVLQNMPSPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P +R+S+ +G RIY I +V F KS KII V ++I++ + +F LDF+ + Sbjct: 121 DRIQPKLERISIVKGFGRIYGIKGMVEFAKSMFKIIAVSLFVSIAMKDEFFRSLDFMFMD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ KV+ ++L+ A L VLD+ W+ + W++ KMSKQ+IKDE+KQS G+P Sbjct: 181 PTLVVPDMARIAAKVVAVVLISTALLAVLDVLWTRYSWHNDQKMSKQDIKDELKQSDGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K RQ+S+AR R R +M+ RAT++I NPTH+A+ALRY++ E APV++AKGQ+LIA Sbjct: 241 IVKARQRSLARDRARRRMIAEVPRATMVIANPTHFAVALRYVREEGGAPVVIAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A H IP+FE+P LARS+F QV +++ IP VFYKAVA+L+++IY K Sbjct: 301 LKIREVAEAHGIPVFEDPPLARSMFAQVSVDNFIPAVFYKAVAELVHRIYTDK 353 >gi|288958052|ref|YP_003448393.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288910360|dbj|BAI71849.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 358 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ +KTE P+ KK+++A +G ++REA+ + + A L+ L+ + + Sbjct: 1 MSEDADESSKTEDPTGKKLDEAHRQGQFAMTREAANWLMVAAMLVVLVSVLPGTMKGLVF 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+ + Q + L + L +P LL F++ G+ + + Q ++ Sbjct: 61 RLNYYFENLDQFTFDRAGVGALLFRVMRDVMWALWLPILL-FVVAGVMATIGQTGFHVSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+ ++ N V +KS VK+ +VG + ++L + + +I + Sbjct: 120 QLIEPKFSKLNPLPGLMNMFKANQAVELLKSIVKLAVVGGVAYMALRPMFGGIETYIGID 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L ++LI +L+ + + D W Q+ ++KM+KQE+KDE KQ G+P Sbjct: 180 LITMLSQMDGLAHRLLIWVLVVLTFIAAGDFLWQKKQFDKQMKMTKQEVKDEHKQQEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R + I R R +MM A A +++TNPTH+A+AL+Y ++ AP+++AKG + +A Sbjct: 240 VVKGRIRQIRFERARKRMMAAVPDADVVVTNPTHFAVALKYDPSQMGAPLVLAKGVDQVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +N+P+ E P LAR+L+ I+ +P Y+AVA++I ++ K Sbjct: 300 FKIREIAESNNVPVIENPPLARALYAACDIDEEVPSEHYRAVAEVITYVFKLK 352 >gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300074126|gb|ADJ63525.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 391 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TE + K+IE A +G+ P SRE + +L + F P + S+ Sbjct: 1 MAE-DSDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSL-D 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + V + S + + D ++ L++ L + VIP L + + + L + N+ Sbjct: 59 RIMVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P F +++ G ++S+N+LV K+ +K +LVGT+ +++ ++ + Sbjct: 119 SSLAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGVES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA + I ++ + + VLD+ + + KL+M+++E+K E K+S G+P Sbjct: 179 LKTAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + +++ R+ R +MM A +++TNPTHYA+AL+Y + + AP +VAKG + IA Sbjct: 239 HIKGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVAKGSDEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH +P+ E P LAR+L I IP Y AVA+++ ++ + Sbjct: 299 AKIRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLR 351 >gi|254228444|ref|ZP_04921870.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262393601|ref|YP_003285455.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] gi|151939032|gb|EDN57864.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262337195|gb|ACY50990.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] Length = 376 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ D + + + + L + + Sbjct: 60 IMSRLF-DLQREEIFDTAKLFDIALGAMTDLLFPLFLVLATLFTAAMIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K++LV + + + ++ Sbjct: 119 QAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAIYLIQASQADLIQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|311105926|ref|YP_003978779.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8] gi|310760615|gb|ADP16064.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8] Length = 384 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 183/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTEA S +++E A EG SRE F + A + + S ++T Sbjct: 1 MAE-ESDLEKTEAASPRRLEKAREEGQIARSRELGTFMMLAAGVGAIWAGGSSLYRTLTG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L QR + D +V A +++P L + + S ++ V++ Sbjct: 60 VLRNGLG-FDQRIVADPGVMVERAVEGFGQALLVLLPIFGLLAVIAVLSSVLLGGLVISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ +F ++S G+KR++S +V +K+ K +LVG + + + ML + Sbjct: 119 KPLQFNFSKLSPISGVKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLSLMHVA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A V I+ + + +LD+ W KL+MSK++++ E K+S G+P Sbjct: 179 PSAALVKALTLVAMCCAFIVASLIVIVMLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R R +MM +A +++TNPTHYA+AL+Y + ++ AP ++AKG LIA Sbjct: 239 HVKARIRQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYDEEKSGAPRVLAKGTGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A E+ IP E P LAR+L + V I IP Y AVA+++ ++ + Sbjct: 299 AKIRELAAENRIPTLEAPPLARALHQHVEIGQEIPAELYTAVAEVLAWVFQLR 351 >gi|28899010|ref|NP_798615.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus RIMD 2210633] gi|153836930|ref|ZP_01989597.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|260365244|ref|ZP_05777801.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|260878794|ref|ZP_05891149.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|260897389|ref|ZP_05905885.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|260899948|ref|ZP_05908343.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|4322010|gb|AAD15913.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus] gi|28807229|dbj|BAC60499.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus RIMD 2210633] gi|149749703|gb|EDM60448.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|308088249|gb|EFO37944.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|308094200|gb|EFO43895.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|308107420|gb|EFO44960.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|308115443|gb|EFO52983.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|328474453|gb|EGF45258.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus 10329] Length = 376 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ D + + + + L+ + + Sbjct: 60 IMSRLF-DLKRDEIFDTTKLFDIALGAMTDLLFPLFLILITLFVAATIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K++LV + + + ++ Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAMYLIQASQADLIQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP HY++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRAPVVIAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|2916784|emb|CAA11951.1| flhB protein [Sinorhizobium meliloti] Length = 360 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 156/350 (44%), Positives = 243/350 (69%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+KTEAPS KKI DA +GN P SRE + F+S LA I+++FF S G ++ Sbjct: 1 MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +L+ + V L++H+ L + LV+P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVSILLILFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G KRIY + LV F KS KII+V ++ + L +YF LD + ++ Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I +++++I++L ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P Sbjct: 181 PVTIFTTMISDLQQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|226313051|ref|YP_002772945.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC 100599] gi|226095999|dbj|BAH44441.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC 100599] Length = 365 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 180/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +DA +G S++ S S+ A L+ S + + + L Sbjct: 17 GEKTEKATPKKKQDARKKGQVAKSQDLSPALSLTAFFFLLMMLGSTMLGTFQDLMRESLI 76 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + T +L + ++ ++ L A ++V P L L + +Q + ++ Sbjct: 77 TYTTWQLNE-ENLKVMVMQLVFEAIKIVGPILGLSFLVAFAVNYMQVGWHFSTEPLQMKL 135 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRI+S+ +LV +KS +KI + + L ++ + ++L Sbjct: 136 EKIDPIKGAKRIFSLRSLVELLKSLLKISAGIYVAYVILWNAKEQVVQLSLLSLGAVLSF 195 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V K+ I + L + L VLD + ++ L+MSKQ++KDE KQ+ G+P+IK + + Sbjct: 196 TAEEVTKLGIYLGLLLFILAVLDYAYQRYEHEKNLRMSKQDLKDEHKQAEGDPLIKGKIR 255 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 RS +MM+ +A +IITNPTH+A+A+RY + AP ++AKGQ+ +A K+R++A Sbjct: 256 ERQRSMAIRRMMQELPKADVIITNPTHFAVAVRYDASAMSAPTVIAKGQDYLALKIREVA 315 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H I E LAR+L+ QV + IP +KAVA+++ +Y + Sbjct: 316 KKHRIVTMENKPLARALYSQVEVGQQIPEEMFKAVAEVLAYVYKLQ 361 >gi|91223558|ref|ZP_01258823.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01] gi|269965690|ref|ZP_06179803.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B] gi|91191644|gb|EAS77908.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01] gi|269829758|gb|EEZ83994.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B] Length = 376 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ D + + + + L + + Sbjct: 60 IMSRLF-DLQREEIFDTAKLFDIALGAMSDLLFPLFLVLATLFTAAMIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K++LV + + + ++ Sbjct: 119 QAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAIYLIQASQADLIQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|308173601|ref|YP_003920306.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7] gi|307606465|emb|CBI42836.1| component of the flagellar export machinery [Bacillus amyloliquefaciens DSM 7] gi|328553467|gb|AEB23959.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens TA208] Length = 359 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + +L + S++ L S ++ P +L+ ++ GI S +Q + + +KP Sbjct: 72 KSIALELSE-SNVHELFVDTVKDISLILAPIMLVALLAGIVSNYMQVGFLFSAEVLKPDL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L Sbjct: 131 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K Sbjct: 191 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA Sbjct: 251 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 311 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356 >gi|311068160|ref|YP_003973083.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942] gi|310868677|gb|ADP32152.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942] Length = 360 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + + + S L Sbjct: 12 GEKTEKATPKKRQDTRKKGQVAKSADVNTAVSLLVVFLSFIAIGPYMRDRLLSFLETFYT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + KL +S++ L L ++ P +L+ ++ G+ S +Q + + +KP Sbjct: 72 ESLTMKLS-MSNVHTLFIDLLKDTGIILAPIMLVALIAGVISNYMQVGILFSAEVIKPDL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L Sbjct: 131 KKLSPLKGFKRIYSMRAIVELLKSILKIAVVGFAAFLVLWTHYGEILRLPLLTPEEVLSF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K Sbjct: 191 VSKLTLWMGLSGAGALMVLAGLDYLYQKFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP ++AKG + +A K+++IA Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEHKMDAPYIIAKGVDHLALKIKQIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 311 KEHDVMTVENRPLARALYDQVEIDQAVPEEFFKVIAEILAYVYKTK 356 >gi|237799251|ref|ZP_04587712.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022106|gb|EGI02163.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 378 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++DA +G S+E + +L LL F S I ++ S Sbjct: 1 MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGSD-IAAMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + T+ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTITRETLMDQSYMGKALLSSGLHALVVILPFLIAMLVAALVGPIMLGGWLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KS K +++ + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALAVLNSERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEKGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTDLDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|229544411|ref|ZP_04433469.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1] gi|229324896|gb|EEN90573.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1] Length = 360 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 100/346 (28%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK DA +G S++ +LA ++L F S + + + Sbjct: 13 GEKTEKATPKKRRDARKKGQTAKSQDIVTAVMLLAVFLFLYFGASSIGSPMMALFRQAFS 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + S + L+T + + +++P + + ++ G+ + Q + +KP+ Sbjct: 73 KYMLQDVTEQS-VGKLMTGVMKQLASMLLPVMAVALLAGVVGNVAQTGLLFTGEGLKPNI 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ G+KRI+SI LV +KS +K+ +VG + + N + + L Sbjct: 132 NKINPVAGLKRIFSIRALVELLKSVLKMAVVGVVAFYVIWANIQDISGLPFKSAGDTLAA 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 I + + L VLD + + ++MSKQEIK+E K G+P+IK++ + Sbjct: 192 VGHLAAITGISASVALFVLAVLDYLYQRFDFEKNIRMSKQEIKEEFKNMEGDPLIKSKIR 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTH+A+ LRY +T++DAP++VAKG + +A+K++ IA Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHFAVCLRYDETKSDAPIVVAKGADFLAQKIKSIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH+I + E LAR+L++QV + IP F+KAVA+++ +Y K Sbjct: 312 KEHDIVMLENRPLARALYEQVEVGGRIPEQFFKAVAEILAYVYKIK 357 >gi|326389464|ref|ZP_08211031.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus JW 200] gi|325994469|gb|EGD52894.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus JW 200] Length = 363 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 186/348 (53%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMKRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|238919250|ref|YP_002932765.1| flagellar biosynthetic protein FlhB, [Edwardsiella ictaluri 93-146] gi|238868819|gb|ACR68530.1| flagellar biosynthetic protein FlhB, putative [Edwardsiella ictaluri 93-146] Length = 388 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE P+ +IE A +G P SRE + + A L +L +S+ Sbjct: 1 MSE-ESDLEKTEDPTPHRIEKAREKGQIPRSRELTSILMLAAGLAIMLLGGEYLAHSLAE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + QR L + ++ L L A ++P L M+ G + ++ + + Sbjct: 60 MIAQGL-NFDQRLLSNDKQMLIQLGMLLQQAVAALMPVLFGLMLVGWCAPMLIGGFLFSP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +K R++ G KR++S L +K +K LVG + L + ML ++ Sbjct: 119 SSIKCDLNRLNPLSGFKRMFSSQVLAELLKGILKAALVGWVCGWFLLHYWSRMLRLVTEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A V ++++L + + D+ + SKL+M+KQEIKDE K+ G+P Sbjct: 179 TLDAMGDALHLVGMCGLLVVLGLLPMVGFDVFYQVWSNLSKLRMTKQEIKDEFKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +I+TNPTHYA+AL+Y + + AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAAARRRMMSDVPGADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++ + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K Sbjct: 299 QRIKALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 351 >gi|59712446|ref|YP_205222.1| flagellar biosynthesis protein FlhB [Vibrio fischeri ES114] gi|59480547|gb|AAW86334.1| flagellar export pore protein FlhB [Vibrio fischeri ES114] Length = 376 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE +SK+++ A ++G S+E + S ++ + L++F ++ S Sbjct: 1 MAESD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAVALMWFGEDVARALFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S ++ ++ D + ++ ++ ++ V L+ + + + Sbjct: 60 VMERFF-SISREEIYDTNKLLEIVGGALIALVFPVFLILITLFVAALAGAAGLGGISFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F +++ GIKR++ + + V +KS +K+ LVG + + + + Sbjct: 119 EAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQLSLDT 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P Sbjct: 179 YPANIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +++TNP HY++ALRY Q+++ AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVVAKGVDHVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNI I P LAR+L+ + IP + AVAQ++ I+ K Sbjct: 299 MKIREIAREHNIDILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQMK 351 >gi|302185378|ref|ZP_07262051.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. syringae 642] Length = 378 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 185/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++DA +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EIKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|183598609|ref|ZP_02960102.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827] gi|188020787|gb|EDU58827.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827] Length = 383 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 183/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++ KTE P+ K + A ++G S+E S +LA + LL+ + Sbjct: 1 MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAG-VSLLWLSGGHLADELR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +++ +V + A ++P + + GI + + + N Sbjct: 59 QIFRQGFIFDGHYIQNTLLMVSYFGRMVGEALFALLPVIGGLALVGISASSLVGGLLFNS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+++ G+KRI+S+N L K+ +K + VG I L +N+ ++L ++ + Sbjct: 119 KLIKFDLKKLNPISGLKRIFSMNALSELFKAILKSLFVGLGAAIFLWQNWSSLLHLVTES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P Sbjct: 179 PVTALGNAMHKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R+ R++MM +A +I+TNPTHYA+AL+Y AP ++AKG +IA Sbjct: 239 QIKAKIRQQQRAIARNRMMADVPQADVIVTNPTHYAVALKYDDKRMGAPKVLAKGAGVIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++I EH I E P LAR+L++ I +IP Y AVA+++ +Y + Sbjct: 299 QRIKEIGQEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351 >gi|154686055|ref|YP_001421216.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens FZB42] gi|154351906|gb|ABS73985.1| FlhB [Bacillus amyloliquefaciens FZB42] Length = 359 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 178/346 (51%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + L S + L S ++ P +L+ ++ G+ S +Q + + +KP Sbjct: 72 KSISLHLS-ASAVHELFVDTVKDISLILAPIMLVALVAGVVSNYMQVGFLFSAEVLKPDL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L Sbjct: 131 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K Sbjct: 191 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA Sbjct: 251 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 311 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356 >gi|254250896|ref|ZP_04944214.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124893505|gb|EAY67385.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 414 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 178/350 (50%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +++ ++TEA + ++ E A EG SRE + F+ + A P + + L Sbjct: 18 DESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGTHLQTMLR 77 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ S+ ++P L L + + + + +L+ Sbjct: 78 GAF-SFDRATAFDTNRMLSAAGSASVEGLAALLPLLALTGLAALLAPMALGGWLLSQKTF 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F R++ G+ RI+SI + S K ++VG I I++ + +L + + Sbjct: 137 ELKFDRLNPIAGLGRIFSIQGPIQLAMSVAKTLVVGGIGGIAIWRSKDELLGLATRPLGT 196 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 197 ALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 256 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 257 GRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARI 316 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 317 RELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366 >gi|313672722|ref|YP_004050833.1| flagellar biosynthetic protein flhb [Calditerrivibrio nitroreducens DSM 19672] gi|312939478|gb|ADR18670.1| flagellar biosynthetic protein FlhB [Calditerrivibrio nitroreducens DSM 19672] Length = 353 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 194/353 (54%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M +ND+ +TE + ++ + A+ EGN P SRE S + L ++ L F+ + + Sbjct: 1 MPDNDSD--RTEEATPRRKQKAIEEGNVPRSRELSTGITFLIAVLILYFYIPSMVEEFKT 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D + R + LL + S +++ +P L + + I + ++Q V + Sbjct: 59 DFIRYFSMYNYRI--NKESAYLLLIEVIKSMAKVTLPLLFVLVFVAILANIVQFGVVFSS 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ + R++ G R++S +L +KS +KI L+G + + T+L A+ Sbjct: 117 KVLELKWDRLNPISGFGRLFSKKSLFELLKSILKISLIGFAAFLIIKSKIPTILTLADAD 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S ++ + +V + + I + ++D + Q+Y LKM+KQE+K+E KQ G+P Sbjct: 177 AVSSIHFLGKLIYEVSFKLAIIIMVIALIDFLYQRWQYYEDLKMTKQEVKEEFKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +S+ R R +MME +A ++ITNPTHYA+A++Y ++ AP +VAKGQ LIA Sbjct: 237 LIKQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDMAKDRAPKVVAKGQRLIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA ++N+ I E+P LAR+L+ V I IP YKAVA+++ +Y K Sbjct: 297 LKIREIASKNNVLIHEDPPLARTLYSSVEIGEEIPENLYKAVAEILAMVYRLK 349 >gi|307945650|ref|ZP_07660986.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4] gi|307771523|gb|EFO30748.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4] Length = 359 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 194/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ K+++DAL++G+ S+E S + ++ + + F +V + Sbjct: 1 MADDQDDAEKTEDPTQKRLKDALDKGDVAKSQEVSTWFTLAGTTLLIALFAPTIGAAVGN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + A + D + L S + +V L+ ++ I ++Q V Sbjct: 61 HLKGFMEHAHDIPV-DGFALKALWRDTGQSIALIVGLPLMALVVMAIAGNMVQHQLVFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +VS G KR++S ++LVNF K KI +VG ++ + L + I A+ Sbjct: 120 ETMKPKLSKVSPLSGFKRLFSKDSLVNFAKGLAKIFVVGALMVLVLWPHRDEADIMIFAD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +L A F + ++L ++ F+ + D + ++W++K KMS +++KDE KQ+ G+P Sbjct: 180 PVILLEEARFLILQLLGAVMAFMTVVAAADYAYQKNKWFNKQKMSLRDVKDEYKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R R +MM A AT+++TNPTH+A+AL+Y + AP+ +AKG + +A Sbjct: 240 HVKGKIRQLRMERSRKRMMAAVPDATVVVTNPTHFAVALKYEEG-MGAPLCLAKGTDAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A E IP+ E P LAR+L+ V I +P YKAVA++I +Y + Sbjct: 299 LKIRELAKEKKIPVVENPPLARALYASVEIEQEVPEEHYKAVAEVIGFVYRMR 351 >gi|134294343|ref|YP_001118078.1| flagellar biosynthesis protein FlhB [Burkholderia vietnamiensis G4] gi|134137500|gb|ABO53243.1| flagellar biosynthetic protein FlhB [Burkholderia vietnamiensis G4] Length = 399 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGTWLVSGPSGAHLQT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D ++ S V+P L L + + + + +++ Sbjct: 60 MLRSAF-TFDRATAFDTHRMLSAAGTASAEGLAAVLPILALTGLAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R+ G+ R++SI + S K ++VG I +++ + +L + Sbjct: 119 KTFELKFDRLDPIAGLGRMFSIQGPIQLAMSVAKTMVVGGIGGVAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V + + L LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGAALADALHLVAVCCGTTVAGMLVLAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351 >gi|146307831|ref|YP_001188296.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp] gi|145576032|gb|ABP85564.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp] Length = 378 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ K+E P+SK++E++ +G S+E + + L + L+ F + + Sbjct: 1 MAESESGAEKSEEPTSKRLEESRKKGQIARSKELNTLAVTLTGTVALIIFGAYMGNVLMD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + + S ++LL A + P L ++ + + + + Sbjct: 61 LMRGNFSLPREVLMHEGSMALYLLAS-GKHALVAIQPLFLALLIASVIGPIALGGWLFSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R++ G+KR++S+ LV +K+ K +++ + + L + +L + Sbjct: 120 EALQPKASRMNPLAGLKRMFSVQALVELLKALAKFLVILAVALVVLALDQDDLLAIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + +D+ + KLKM+KQE++DE K + G P Sbjct: 180 VEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQKLKMTKQEVRDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +MM+A +A ++ITNPTH+A+AL+Y + AP+L+AKG + +A Sbjct: 240 EVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAPMLLAKGGDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAQEHKVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352 >gi|330972452|gb|EGH72518.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 378 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGSD-IALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KS K +++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFVAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|310641562|ref|YP_003946320.1| flagellar biosynthetic protein flhb [Paenibacillus polymyxa SC2] gi|309246512|gb|ADO56079.1| Flagellar biosynthetic protein FlhB [Paenibacillus polymyxa SC2] Length = 370 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK +DA +G S E +L L+ F + Sbjct: 21 SGEKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIF 80 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + ++ + + ++ + ++ P + ++ GI + +Q +L + P Sbjct: 81 VNRLSMEV-TPNTTLLMMGEYGVQILIMLAPIFVGAIVIGIAANYMQIGFLLTGEGITPK 139 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ +G K I+S+ +LV F+KS +K+ ++G ++ L + + + +L Sbjct: 140 FSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKADLPKLAEMSGDQMLS 199 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ + I + + L +LD + ++ LKMSKQ+IKDE K+ G+P+IK + Sbjct: 200 FTASLTMELGLKIGVVLFILAILDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKI 259 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ A +IITNPTH+A+AL+Y +E +AP ++AKGQ+ +A ++++I Sbjct: 260 RERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALRIKEI 319 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + + E LAR+LF++ I AIP ++AVA+++ +Y K Sbjct: 320 AKQSGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366 >gi|330815159|ref|YP_004358864.1| FlhB [Burkholderia gladioli BSR3] gi|327367552|gb|AEA58908.1| FlhB [Burkholderia gladioli BSR3] Length = 404 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE + ++ E A EG SRE S F+ + A P + + Sbjct: 1 MAE-DSDLEKTEEATPRRREKAREEGQVARSRELSSFALLAAGFYGAWMLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D ++ + + P L L + + + + +L+ Sbjct: 60 MLRGSLG-FDRAAAFDTHAMLTGAGRAGMEGLSALAPVLALTGLAALAAPIALGGWLLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+S+ L+ + K ++VG I I++ ++ +L + Sbjct: 119 KAIGFKFDRLNPISGLGRIFSLQGLIQLGMALAKTVVVGGIGGIAIWKSREELLGLMMLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L V + + + + +D+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHQALADTLHLVAVCCGVTVAGMLVVAGMDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+ALRY E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRAPKVVAKGINLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH +PI E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAEEHRVPILEAPPLARALYHNVELEREIPGPLYSAVAEVLAWVYQLK 351 >gi|328911742|gb|AEB63338.1| component of the flagellar export machinery [Bacillus amyloliquefaciens LL3] Length = 360 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + L+ + S + Sbjct: 13 GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + +L + S++ L S ++ P +L+ ++ GI S +Q + + +KP Sbjct: 73 KSIALELSE-SNVHELFVDTVKDISLILAPIMLVALLAGIVSNYMQVGFLFSAEVLKPDL 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++S +G KRIYS+ +V +KS +KI +VG + L +Y +L P +L Sbjct: 132 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + ++MSKQ+IKDE K+S G+PIIK++ K Sbjct: 192 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA Sbjct: 252 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 312 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 357 >gi|297538882|ref|YP_003674651.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301] gi|297258229|gb|ADI30074.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301] Length = 394 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 182/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE SSK++E+A EG+ P SRE + + + + +L ++ + Sbjct: 1 MAE-DSDLEKTEQASSKRLEEARKEGDVPRSRELATVTVLFTAGLTILIMSEHLNQALKT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + + ++ S P L+ + I + ++ + + Sbjct: 60 TMSAGL-QFDRTAAFEPTVLLMRTADSISSLLTAFAPLALILVAVAIAAPVLVGGWIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F R++ +G+ I S N+LV +KS K++LVG + + ++ + +L + Sbjct: 119 KAFVPQFSRLNPIKGLTNIISKNSLVELVKSIAKVMLVGIVAYVVISHDMEPILTLSTLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + + + I+ + + +D+ + + + +KLKM+K+E++ E K+S GNP Sbjct: 179 LKSSIAQVGSLMLTGFLTIVSTLVFIAAIDVPYQLYHYANKLKMTKEEVRQESKESDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R + +MM A ++ITNPTHYA+A++Y APV+VAKG + +A Sbjct: 239 EIKAKIRQQQREMAKRRMMSEIPNADVVITNPTHYAVAIKYQDEGMRAPVVVAKGADEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 K+R++A EH + I E P LAR+L+ + + IP Y AVA+++ ++ +I Sbjct: 299 LKIREVAGEHKVLIMESPKLARALYAHTELGNEIPEALYSAVAEILAYVFQMRI 352 >gi|88800470|ref|ZP_01116034.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp. MED297] gi|88776800|gb|EAR08011.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp. MED297] Length = 378 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 176/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P+ +K+E A +G+ S+E + + ++ I L F + + Sbjct: 1 MAEQDTSQEKTEEPTPRKLEKAKEDGDIARSKELNTSAILIVSAICFL-VFGRMMGTTMM 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S R D+ ++ ++ A ++P ++ + + + + Sbjct: 60 RIMEFCFSFDPRASWDVIVAGEYVSVVAGEALLSIVPLFGFLLLAALFAPIGLGGWNFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ GIKR++S+N+LV +K + K+I+V T + L L + Sbjct: 120 KALAPKGSRMNPLSGIKRMFSMNSLVELLKGWGKVIVVATAAILVLISLKNEFLSMVFQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + HA + +++ + ++DI + + KL+M+ QEIK+E K + G P Sbjct: 180 TESAITHAVEVIAWSFLLLAASTVLIAIVDIPFQIYSHTKKLRMTMQEIKEEYKNTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + K + R +MM A +IITNPTHYA+AL+Y AP++VAKG + +A Sbjct: 240 EVKAKIKQLQREMANRRMMSDVPEADVIITNPTHYAVALKYDPNAMPAPLMVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+I E+++P+ E P+LARS++ I IP Y AVAQ++ IY Sbjct: 300 FKIREIGQEYDVPVLEMPALARSIYHHTRIGDEIPEGLYVAVAQVLAYIYQ 350 >gi|53720905|ref|YP_109891.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei K96243] gi|53724312|ref|YP_104358.1| flagellar biosynthesis protein FlhB [Burkholderia mallei ATCC 23344] gi|167817864|ref|ZP_02449544.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 91] gi|167847750|ref|ZP_02473258.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei B7210] gi|52211319|emb|CAH37308.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei K96243] gi|52427735|gb|AAU48328.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC 23344] Length = 405 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|292488559|ref|YP_003531443.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|292899731|ref|YP_003539100.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946] gi|291199579|emb|CBJ46696.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946] gi|291553990|emb|CBA21035.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|312172704|emb|CBX80960.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC BAA-2158] Length = 383 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ + KTE+P++ ++E A EG P SRE + ++ L L + + Sbjct: 1 MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSILMLITGLSILWVGGEWMGRKMGA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D S ++ L+ ++ L A V+P + ++ I + ++ VL+ Sbjct: 60 LLADGLV-FNHSVVSDSSQMLRLVANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ +++S + +K+ +K LVG + + + ++ ML ++ + Sbjct: 119 KAIKFDPGKMNPVKGLAKLFSAQSASELLKAVLKATLVGIVCGLYIWHHWAGMLHLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PLIALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVLAKGAGDIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+ IPI E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 299 LRIRELAAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351 >gi|332533113|ref|ZP_08408982.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis ANT/505] gi|332037395|gb|EGI73849.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis ANT/505] Length = 376 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 168/353 (47%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE P+ KK++++ +G S+E ++ I LL + + + Sbjct: 1 MSE-DSGQEKTEEPTGKKVDESKKKGQVARSKELGTMFVLIFSAISLLLYGPEIGKGLYN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +L S + + D + + + +S + + + + GI + + Sbjct: 60 IMGRML-SLNRNEAYDTTKMFAVWASVSDVLIFPMAMFVFIILFAGIIGNTLLGGFNFSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++S +G KR++ V K+ +K +V + + +L Sbjct: 119 QAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFSVVAGFAVFLINTFFDEILHLSIEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + HA + + + + + + +D + + + +LKM+ QE+KDE K S G+P Sbjct: 179 APNNIIHALEILAWMFLALSCTLVIIAAIDAPYQSYTHHKQLKMTMQEVKDEYKNSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AKG + +A Sbjct: 239 QIKARIRQTQRQMSQRRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAKGIDEMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++RK+A + +PI E P L R+L+ + IP + AVAQ++ ++ K Sbjct: 299 MQIRKVAIGNEVPILESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351 >gi|167721674|ref|ZP_02404910.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei DM98] Length = 405 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|170702808|ref|ZP_02893660.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria IOP40-10] gi|170132277|gb|EDT00753.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria IOP40-10] Length = 399 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A +P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + D ++ S+ ++P L L + + + + +++ Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351 >gi|330880588|gb|EGH14737.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L L A +++P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K +++ + + L+ ++ + Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + L M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKTLLMTKQEVRDEQKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|134094535|ref|YP_001099610.1| part of export apparatus for flagellar proteins [Herminiimonas arsenicoxydans] gi|133738438|emb|CAL61483.1| Flagellar biosynthetic protein FlhB [Herminiimonas arsenicoxydans] Length = 390 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 180/356 (50%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTE S +K+E A +G+ P SRE + + +L F ++ + Sbjct: 1 MAE-ESDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGASAAFWFTGG----NMIA 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPV 117 +L+ +LAS E + LL H + S +L+I P L+ ++ + S ++ + Sbjct: 56 ELNSMLASGLSFDREMAFDMELLLAHAAASIIKLLIAFAPAALILIVVALASPMLIGGWL 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + ++P+F R++ +G+ + S + V K+ K IL+G I + +L Sbjct: 116 FSAQALQPNFGRMNPIKGLGNMVSTRSAVELGKAIAKTILIGCIAWTVMKYEIDGVLALS 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 S + + I+ + + +D + Q KL MS+Q+++ E K+S Sbjct: 176 VTPLQSGIEQVGHILLISFTFIVSGLIIIAGIDAPYQMWQHAKKLMMSRQDVRQESKESD 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP IK + + R R +MM A +++TNPTHYA+AL+Y + AP +VAKG + Sbjct: 236 GNPEIKAKIRQQQREMARRRMMTEVPTADVVVTNPTHYAVALKYSENGMRAPTVVAKGAD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R+IA E+N+ + E P LAR+LF+ + IP Y AVA+++ ++ + Sbjct: 296 EVAAKIREIALENNVVMLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLR 351 >gi|56460295|ref|YP_155576.1| flagellar biosynthesis protein FlhB [Idiomarina loihiensis L2TR] gi|56179305|gb|AAV82027.1| Flagellar biosynthesis proten FlhB [Idiomarina loihiensis L2TR] Length = 375 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 172/354 (48%), Gaps = 3/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +TE P+ ++ + A ++G S+E +++ + F+F +Y Sbjct: 1 MAETD--QERTEDPTERRKQQARDKGQIARSKEMGTGFVLVSAAVSF-FWFGGALYQGVR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ ++ + ++ D S + ++ ++F + Sbjct: 58 NVFEIMFTLDRQHAFDTSKMYEAFAIAFGEILWPILTIFAFIVVFTFLGNSWLGGINFSA 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G KR++ + LV +K+ K ++V L + +L Sbjct: 118 QAMAPKFNRMNPLNGFKRMFGVQALVELIKAIAKFMVVAVSAYFLLKWKFVDILQMSMGQ 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ +A T+ + +++ L I + V+D + + LKMSKQE+KDE K + G+P Sbjct: 178 MPTMIENALDTLLWMFLLLCLSIFLIVVIDAPFQVWKHNKDLKMSKQEVKDEHKDTEGSP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + +MM+ +A +++TNPTHYA+AL+Y APVL+AKG + A Sbjct: 238 EVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHYAVALKYDDGGVQAPVLLAKGTDETA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 K+R+IA E+ IP+ P LARS++ + IP + AVAQ++ +Y ++ Sbjct: 298 AKIREIALEYEIPLVASPGLARSIYHTTELEKEIPKGLFVAVAQILAYVYQLRM 351 >gi|171321732|ref|ZP_02910646.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] gi|171092980|gb|EDT38217.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] Length = 399 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A +P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + D ++ S+ ++P L L + + + + +++ Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLLMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351 >gi|312884898|ref|ZP_07744588.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC BAA-2122] gi|309367375|gb|EFP94937.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC BAA-2122] Length = 376 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F S + S Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLIIGAIALMWFGSFLAKGLFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ LL+ + + ++ Sbjct: 60 VMGRLF-DLSREEIFDLDKLFDIILGSVGELVFPLLLILLVLFLAALIGAAGVGGINFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P + +++ G+KR+ + + V +KS +K+ LV + + + + Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGVQSWVELIKSILKVTLVSGMAFYLINDAKQDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +D+ + Q ++LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCTLLLVAAIDVPFQIWQHANQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP HY++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHYSVALRYRQDTDKAPIVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P L R+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREVAREHDIYIVPAPPLTRALYFSTELEQEIPDGLFTAVAQILAYVFQLK 351 >gi|295097231|emb|CBK86321.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 381 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D KTE P+ + + A EG P SRE + + +L ++ S + S Sbjct: 1 MSEESESD-KTEDPTPHRKQKAREEGQVPRSRELTTLAMLLVGWGLIVGAGSHLATQLES 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L + + + D +++ L A ++P + I + I + Sbjct: 60 ILHNGL-TFDRLLIRDPQNMLHRAASLLSMAFLAILPFAGGLYVTAITAPSIIGGLNASS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K + K+++ GIKR++S + +KS +K++L T + L N ++ + Sbjct: 119 KALKVNLKKLNPVTGIKRLFSAQMVSEMIKSILKVLLAATGGGLFLLLNKSRFINLMYEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++ ++L + + D+ + + KL+MS+QEIKDE K G+P Sbjct: 179 LGGALNDISNLLIGCMLYVILSLIPMVAFDVIYQLWSNFKKLRMSRQEIKDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I R + +MM A +++ NPTHY++AL+Y + AP++VA G LIA Sbjct: 239 HIKGRVRQIQRQMAQSRMMAEVPTADVVVNNPTHYSVALKYQEGTMGAPIVVASGSGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+ +P+ E P LAR+L++ +P Y AVA+++ +Y + Sbjct: 299 LRIREMAEENRVPMLEAPPLARALYRHCEPGQPVPGELYNAVAEVLAWVYSLR 351 >gi|163801858|ref|ZP_02195755.1| flagellar biosynthesis protein B [Vibrio sp. AND4] gi|159174366|gb|EDP59170.1| flagellar biosynthesis protein B [Vibrio sp. AND4] Length = 376 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+D +TE + K+++ A +G S+E + S ++ I L++F S+ + Sbjct: 1 MSESD-GQERTEDATPKRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T+ ++ D + + + + L+ + + + Sbjct: 60 IMSRLF-DLTRDEIFDTAKLFDIAFGAMADLLFPLFLILITLFIAALIGAAGVGGVSFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K+ LV + + + ++ Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVGLVAGMAIYLIQASQSDLIQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA T+ +++I + + +DI + Q ++LKM+KQEIKDE K++ G P Sbjct: 179 YPQNIFHALDTLLNFILLISCSLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY Q + AP+++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPIVIAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVARENDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|88813214|ref|ZP_01128454.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] gi|88789536|gb|EAR20663.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] Length = 385 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 103/354 (29%), Positives = 186/354 (52%), Gaps = 2/354 (0%) Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E + KTEAP++K+ +A +G P SRE + ++L+ LL F + S+ Sbjct: 1 MAEEHSNGEEKTEAPTAKRRHEAKEQGQVPRSRELTTLLAMLSAAGGLLIFGNYMTDSLA 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L + + D + LL + V P L+ ++ + + + + Sbjct: 61 DALRQGL-HVGRDAIFDPQAPIRLLREMIAQGLWAVGPLALVLLLVALVAPVALGGWTFS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P ++ +G+KR++ ++ LV KS K++LVG + T +L ++ + Sbjct: 120 AKALAPKLSKLDPVKGLKRLFGVHGLVELGKSLAKVMLVGAVGTYALWQSLDDFQALAAE 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 L HA +M+ + + ++D+ + KL+M+KQE+KDE+KQ+ G Sbjct: 180 ALFPALQHAARIFNTTFLMLATALILIALVDVPFQLWDHTRKLRMTKQELKDELKQTEGK 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K+R + + + + +MME +A +++TNPTH+A+ALRY AP L+AKG +LI Sbjct: 240 PEVKSRIRQLQQQAAQGRMMEQVPKADVVVTNPTHFAVALRYDPLHMRAPRLMAKGTDLI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+++R+IA ++ +P+FE P LAR+L ++ +P Y AVAQ++ IY + Sbjct: 300 AQRIRRIAEDNGVPLFEAPPLARALHYTTELDQEVPAGLYLAVAQVLAYIYQLR 353 >gi|167740656|ref|ZP_02413430.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 14] gi|167826242|ref|ZP_02457713.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 9] gi|167896340|ref|ZP_02483742.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 7894] gi|167904714|ref|ZP_02491919.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC 13177] gi|167912992|ref|ZP_02500083.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 112] gi|42766716|gb|AAS45441.1| FlhB [Burkholderia pseudomallei] Length = 405 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|118588696|ref|ZP_01546104.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] gi|118438682|gb|EAV45315.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] Length = 359 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 196/353 (55%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ K++++A ++G+ P S+E S + ++ + + F S+ Sbjct: 1 MADDSDDSEKTEDPTHKRLKEAHDKGDVPKSQEVSTWFTLAGATLMIAIFAPSTAVSLGE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L A Q + D + L S + +V LL ++ + L+Q P+L Sbjct: 61 MMKGYLEHAHQIAV-DGYALKALWRDTGQSVALIVGIPLLALVIMAVAGNLVQHQPLLTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +VS G KR++S +LVNF K +KI +VG I+ + + + A+ Sbjct: 120 ETIKPKLSKVSPASGFKRLFSSESLVNFAKGMIKISVVGAIMVAVMWPHRDEAEVMVFAD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + IL A + ++L +L + + D + ++W++K KMS +E+K+E KQ+ G+P Sbjct: 180 TNIILEEARILILQLLSAVLAVMTVVAGADFIYQRNKWFNKQKMSLREVKEEYKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R R +MM A +AT+++TNPTHYA+AL+Y + AP+ +AKG + IA Sbjct: 240 QIKGKIRQLRMERSRKRMMSAVPQATVVVTNPTHYAVALKYEEG-MGAPLCLAKGTDAIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E +IP+ E P LAR+L+ V I+ +P YKAVA++I ++ + Sbjct: 299 LKIREIAKESDIPVVENPPLARALYATVEIDQEVPEEHYKAVAEVIGFVFRMR 351 >gi|221202387|ref|ZP_03575420.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2M] gi|221208974|ref|ZP_03581970.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2] gi|221171096|gb|EEE03547.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2] gi|221177801|gb|EEE10215.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2M] Length = 399 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + D ++ SL ++P L L + + + +++ Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAALLAPMALGGWLISP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I +++ + +L + Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351 >gi|323491458|ref|ZP_08096642.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546] gi|323314327|gb|EGA67407.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546] Length = 376 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ + Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVIGSVALMWFGEGLARALFT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D + + S ++ L+ + + ++ Sbjct: 60 AMGRLF-SLSREEIFDQVKLFDIALGSLSSLLLPLLLILVTLFIAALIGAAGVGGISFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P + +++ G+KR+ + + V +KS +K+ LV + + + Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCTLLLVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDSDRAPIVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREHDIYVVPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351 >gi|66046670|ref|YP_236511.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. syringae B728a] gi|63257377|gb|AAY38473.1| Flagellar biosynthetic protein FlhB [Pseudomonas syringae pv. syringae B728a] gi|330899444|gb|EGH30863.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 378 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|148976426|ref|ZP_01813132.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3] gi|145964249|gb|EDK29505.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3] Length = 376 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ Sbjct: 1 MAESD-GQERTEDATPRRLQQAKEKGQVARSKELASASVLIVGAVALMWFGESMAKALFE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D + ++ + ++ + L+ + + ++ Sbjct: 60 AMQRLF-SLSRDEIFDTNKLLEIAGGALVNLLFPLFLILITLFIAAVIGAAGVGGINFSM 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LV + + + ++ Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELIKSILKVALVSGMAVYLIQASQHDLMQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEFKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q ++ AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVVAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREIAREHDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351 >gi|84388124|ref|ZP_00991020.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] gi|84377191|gb|EAP94061.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] Length = 376 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + K+++ A +G S+E + S ++ I L++F ++ Sbjct: 1 MAESD-GQERTEDATPKRLQQAKEKGQVARSKELASASVLIVGAISLMWFGESMAKALFE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D + ++ + ++ + L+ + + ++ Sbjct: 60 AMQRLF-SLSRDEIFDTNKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGVNFSM 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ GIKR++ + + V +KS +K+ LV + + + ++ Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEFKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q ++ AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVVAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREIARENDIYIIPAPPLARALYHTTELEQQIPDGLFAAVAQVLAYVFQLK 351 >gi|156975417|ref|YP_001446324.1| flagellar biosynthesis protein FlhB [Vibrio harveyi ATCC BAA-1116] gi|156527011|gb|ABU72097.1| hypothetical protein VIBHAR_03148 [Vibrio harveyi ATCC BAA-1116] Length = 376 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T+ ++ D + + + + L+ + + + Sbjct: 60 IMSRLF-DLTRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K+ LV + + + ++ Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|22034295|gb|AAL01537.1| FlhB [Escherichia fergusonii] Length = 381 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + KTE P+ + + A EG P SRE + S +LA LL + + Sbjct: 1 MSEENDS-EKTEDPTPHRKQKAREEGQVPRSRELTSLSMLLAGWGLLLVGGNYLAKQLQH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L + + + D H++ L A ++P + + + + I ++ Sbjct: 60 LLHNGL-TFDRLLVSDPQHMLHHAAALLGMAFLAILPFVGGLFITALVTPSIIGGLNMSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K + K+++ GIKR++S + +KS +K++L G + L N ++ I Sbjct: 119 KAIKFNLKKLNPLSGIKRLFSGQMVSEMVKSILKVLLAGIGGGLFLWLNKAKFINLIFEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + +++I+L + + D+ + + KL+MS +EIKDE K G+P Sbjct: 179 LGMALADISALLIGCMLVIILSLIPMVAFDVIYQLWSNFKKLRMSLKEIKDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + +MM A +++ NPTHY++AL+Y + AP++VA G LIA Sbjct: 239 QIKARVRQLQRQMAQQRMMTDVPTADVVVNNPTHYSVALKYQEGAMGAPMVVASGSGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+ +P+ E P LAR+L++ + +P Y AVA+++ +Y K Sbjct: 299 LRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYGLK 351 >gi|317403765|gb|EFV84247.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans C54] Length = 384 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 110/353 (31%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTEA S +++E A EG SRE F +LA + ++ IY S Sbjct: 1 MAE-ESDLEKTEAASPRRLEKAREEGQIARSRELGTFM-MLAVGVGAIWAGGGTIYKGLS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + QR + D +V + A +++P L + + S ++ V++ Sbjct: 59 GVLRNGLAFDQRVVADPGVMVEQAVNGFGHALMVILPIFGLLAVIAVLSSVLLGGIVISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F ++SL G+KR++S +V +K+ K +LVG + L + ML + Sbjct: 119 KPLSPNFSKLSLFAGLKRMFSAQTVVELIKALAKAMLVGGVAVWILWRYHDDMLGLMHVA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A V I+ + + +LD+ W KL+MSK++++ E K+S G+P Sbjct: 179 PSAALTKALSLVAMCCAFIVASLLVIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 K R + R R +MM +A +++TNPTHYA+AL+Y + +N AP ++AKG LIA Sbjct: 239 HTKARIRQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYEEDKNGAPRVLAKGTGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH IP E P LAR+L + V + IP Y AVA+++ ++ + Sbjct: 299 AKIRELAAEHRIPTLEAPPLARALHQHVELGQEIPAELYTAVAEVLAWVFQLR 351 >gi|261344152|ref|ZP_05971796.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM 4541] gi|282567746|gb|EFB73281.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM 4541] Length = 383 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++ KTE P+ K + A ++G S+E S +LA + L + Sbjct: 1 MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLAAQLRQ 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L++ ++ L + A ++P + + GI + + + N Sbjct: 60 IMRQGFI-FDGHYLQNTKLMLNYLGSVVSEALFALLPVIGGLALVGISASSLVGGLLFNS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K++ +G+KRI+S+N L K+ +K + VG I L +++ ++L + Sbjct: 119 KLIKFDPKKLDPIKGLKRIFSMNALSELFKAILKSLFVGLGTWIFLWQSWPSLLHLVMEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L +A V +I+ + + D+ + + KL+MS+QEIKDE KQ G+P Sbjct: 179 PVTALGNALEKVIFAGYLIVFMLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + R+ R++MM A +I+TNPTHYA+AL+Y + AP ++AKG +IA Sbjct: 239 HIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++I E+ I E P LAR+L++ I +IP Y AVA+++ +Y + Sbjct: 299 QRIKEIGEENRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351 >gi|188533614|ref|YP_001907411.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99] gi|188028656|emb|CAO96518.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99] Length = 383 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ KTE+P++ ++E A EG P SRE + ++A L L + + Sbjct: 1 MS-QDSDQEKTESPTAHRLEKAREEGQIPRSRELTSILMLIAGLSILWGGGEWMGRKLGA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D S ++ + +L A V+P + ++ I + ++ VL+ Sbjct: 60 LLADGLV-FNHSMVSDTSQMLRQIANLLQQAVLAVLPMMFGLVVVAIAAPMLLGGLVLSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+ ++ S + +K+ +K LV + + + ++ ML ++ + Sbjct: 119 KAIKFDLGKMNPIKGLAKLVSAQSAAELLKAVLKATLVSIVCGLYIWHHWAEMLRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + I+++L ++ + D+ + ++ L+MS Q+I+DE KQ G+P Sbjct: 179 PITALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHY++AL+Y + + AP ++AKG IA Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVLAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ E+ IPI E P LAR+L++ I IP Y AVA+++ ++ + Sbjct: 299 LRIRELGAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351 >gi|54308128|ref|YP_129148.1| flagellar biosynthesis protein FlhB [Photobacterium profundum SS9] gi|46912554|emb|CAG19346.1| putative flagellar biosynthetic protein FlhB [Photobacterium profundum SS9] Length = 376 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D +TE + +K+E A +G S+E + + ++ + L+ ++ G+ + Sbjct: 1 MSDSD-GQERTEDATPRKLEQAREKGQVARSKELASVAVLVMGAVSLI-WYGEGLGKALA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + S ++ ++ D+S + ++ S + L++ + + ++ Sbjct: 59 EIMTQMFSLSREEIYDLSRLFSIMLTAIWSVVFPLGLVLVVLFLAALIGAAGLGGVSFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ + + V +KS +K++LV + + + L Sbjct: 119 EAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVAGVAAYLMYSSLNDFLLLSLEI 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S ++HA + + +++I + + +D+ + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPSNIFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +II NP H+++ALRY + AP+++AKG + A Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIIINPEHFSVALRYDPKLDSAPIVIAKGVDHTA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +HNI I P LAR+++ + IP + AVAQ++ I+ K Sbjct: 299 LKIREIANKHNIDIVSAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351 >gi|330940692|gb|EGH43704.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. pisi str. 1704B] Length = 378 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGSD-IALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|123442794|ref|YP_001006771.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161312|ref|YP_004297889.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089755|emb|CAL12608.1| flagellar biosynthetic protein FlhB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605230|emb|CBY26728.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. palearctica Y11] gi|325665542|gb|ADZ42186.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860618|emb|CBX70915.1| flagellar biosynthetic protein flhB [Yersinia enterocolitica W22703] Length = 383 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +K+E P++ K+E A +G P SRE + + A L L + + Sbjct: 1 MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILWVSGESMARQLAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D ++ + L +IP ++ + ++ + + Sbjct: 60 MIAQGL-HFDHGLISDDKQMLRQIGMLLRQTLIALIPIFAGLVIVAMAVPMLLGGVLFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR+S G+KR++S L +K+ +K LVG + I L N+ M+ ++A Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLMAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + ++++L + + D+ + KL+M+KQEI+DE K G+P Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +T+ AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|162210026|ref|YP_331480.2| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 1710b] Length = 405 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ ++TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL + P L L + + + + +++ Sbjct: 67 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A V M + + + LD+ + Q+ KL+M+K+EIK E +++ G+P +K Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 >gi|161523355|ref|YP_001578367.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC 17616] gi|189351872|ref|YP_001947500.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC 17616] gi|160340784|gb|ABX13870.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans ATCC 17616] gi|189335894|dbj|BAG44964.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] Length = 399 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A +P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + D ++ SL ++P L L + + + +++ Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAALLAPMALGGWLISP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I +++ + +L + Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351 >gi|304404263|ref|ZP_07385925.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus YK9] gi|304347241|gb|EFM13073.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus YK9] Length = 369 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 179/347 (51%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE+ + KK ++A +G S+E +L + + + L Sbjct: 18 SQEKTESATPKKRQEAREKGQVAKSQELPGAFILLFVFMSFYMIGPYYKSRILAMFGDLF 77 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 L + +++ L T L ++ P + ++ + +Q + + +K Sbjct: 78 EDWLTLDL-TMGNVMSLFTQLMYEMLMMLAPIFAIALLVALLGNYVQVGILFTGDPLKMK 136 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++S +G K I+++ +V F+K+ +K++++G ++ ++L + ++ + +L Sbjct: 137 FSKLSPIQGFKNIFAMRTVVEFIKNILKLVVIGLVVFMTLKSQWGRIIQLDTLPVEYVLG 196 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 K+ I I + + L + D + +++ L+MSKQ+IKDE K++ GNP+IK R Sbjct: 197 FTGGIALKLGIEIGVILVVLALGDYFYKKYEYEKGLRMSKQDIKDEFKKTEGNPLIKGRI 256 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A +IITNPTH+A+AL+Y ++ +APV++AKG + +A ++R+ Sbjct: 257 RERQRKMALQRMMQDVPKADVIITNPTHFAVALKYDASKMEAPVVLAKGMDHVALRIRET 316 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH + E LAR+L+ + I +IP ++AVA+++ +Y K Sbjct: 317 AKEHGVITMENKPLARALYDRSEIGDSIPSDLFQAVAEVLAYVYKLK 363 >gi|227820846|ref|YP_002824816.1| flagellar biosynthesis protein FlhB [Sinorhizobium fredii NGR234] gi|227339845|gb|ACP24063.1| flagellar biosynthetic protein FlhB [Sinorhizobium fredii NGR234] Length = 360 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 158/350 (45%), Positives = 242/350 (69%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ D+KTEAPS KK+ DA +GN P SRE + F+S LA I+++FF S G S Sbjct: 1 MSDDQDKDSKTEAPSEKKLSDAAEKGNVPFSREVTAFASTLAVYIFIVFFLSDGAASTAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +LE + V L++H+ L ++ LV+P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLETATDAVGLISHVVLKSAGLVLPVFVLLIIFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P+ RVS G KRI+ + LV F KS KII+V I+ + L +YF LD + ++ Sbjct: 121 DRIMPNMNRVSPIAGFKRIFGVPGLVEFAKSLFKIIVVSIIVVLVLWNDYFATLDLMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I +++++ ++LL A L ++D+ W+ H WYS+LKM+KQE+K+E+KQS G+P Sbjct: 181 PVTIFATMISDLKQIVTVVLLATAVLAIVDLFWTRHHWYSELKMTKQEVKEELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT++I NPTHYA+ALRY++ E+DAPV+VA GQ+L+A Sbjct: 241 IVKSRLRSMQRDRARKRMIASVPRATLVIANPTHYAVALRYVREESDAPVVVAMGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|160939623|ref|ZP_02086971.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC BAA-613] gi|158437414|gb|EDP15178.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC BAA-613] Length = 353 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 171/348 (49%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + K+ +D +GN S + + S+L L S +H+ Sbjct: 2 AAEEKTEKATPKRRQDERKKGNVFQSNDVAAVCSLLVLFHSLKALAPMMYESFGECMHLF 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + A+ + L L + +P L + ++ + Q + + +K Sbjct: 62 FSYASSPDIFWQEGGKGLFMKAVLVFFKASLPLLFIGVLTAVIVTFFQTRMAFSWDVLKF 121 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F R+S +G KR++S+ +++ +KS +KI ++G ++ L + + S L Sbjct: 122 KFDRISPLKGFKRMFSLRSVIELLKSLIKITVLGWVVWFFLKGRLTELTGLMEGTVASAL 181 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + TV ++ + + L +D + + ++ L+MSKQEIK+E KQ+ G+P IK + Sbjct: 182 IYVGNTVVSLVDTVGIAFVFLGAVDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDPQIKGK 241 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ A ++I NPTH+A+AL Y +N APV++AKG + +A K+ + Sbjct: 242 IREKQRQMASRRMMQNVPNADVVIRNPTHFAVALGYDSGKNRAPVVLAKGADHLALKIVE 301 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A + I E+ LAR L+ V ++ IP +Y+ VA+++ +Y + Sbjct: 302 VAEASGVYIMEDRPLARGLYDTVEVDMEIPEEYYQTVAKILAFVYKLQ 349 >gi|296133030|ref|YP_003640277.1| flagellar biosynthetic protein FlhB [Thermincola sp. JR] gi|296031608|gb|ADG82376.1| flagellar biosynthetic protein FlhB [Thermincola potens JR] Length = 368 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 175/347 (50%), Gaps = 1/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE ++KK + A EG S E + +LA I + FF + ++ + Sbjct: 19 QEKTEKATAKKRQKARQEGQVLKSMEFNSAVVLLATFISIKLFFPYMLEQLSGFFREIYR 78 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + L ++ S + V+P + ++ G+ + L+Q + +KP+ Sbjct: 79 MWGSQDFVLNARTSHQLYFSTIKVSFMTVLPIAGIAVVSGVAANLLQSGFIFTTKPLKPN 138 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ GIKR++ + +LV +KS VK+ +VG I + + N + Sbjct: 139 ISALNPINGIKRMFGVRSLVELVKSLVKVAIVGYIAYTGYKSEFNKFPQLLDMNIRASSL 198 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + I + + + D + + ++ LKM+KQE+K+E+KQ+ G+P +K Sbjct: 199 FIGRLILNMAFKIAVCLLIFSGFDYWYQWWEYERSLKMTKQEVKEELKQTEGDPKVKAAI 258 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + +MM+A +A ++ITNPTHYA+AL+Y AP +VAKGQ+ +A++++++ Sbjct: 259 RRKQQQMSVARMMQAVPKADVVITNPTHYAVALKYDADTMSAPEVVAKGQDYLAQRIKQV 318 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH + + E LA++L+ V I +IP Y+AVA+++ +Y K Sbjct: 319 AKEHGVVLVENKPLAQALYNAVEIGESIPAELYQAVAEVLAFVYKLK 365 >gi|221214213|ref|ZP_03587185.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1] gi|221165868|gb|EED98342.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1] Length = 399 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + D ++ S+ ++P L L + + + +++ Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASVEGLAALLPILALTGAAALLAPMALGGWLISP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I +++ + +L + Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351 >gi|2494575|sp|Q56886|FLHB_YEREN RecName: Full=Flagellar biosynthetic protein flhB gi|793892|emb|CAA88185.1| flhB [Yersinia enterocolitica] Length = 383 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +K+E P++ K+E A +G P SRE + + A L L + + Sbjct: 1 MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILWVSGESMARQLAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D ++ + L +IP ++ + ++ + + Sbjct: 60 MIAQGL-HFDHGLISDDKQMLRQIGMLLRQTLIGLIPIFAGLVIVAMAVPMLLGGVLFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K KR+S G+KR++S L +K+ +K LVG + I L N+ M+ ++A Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLMAAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A + ++++L + + D+ + KL+M+KQEI+DE K G+P Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y +T+ AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351 >gi|161723151|ref|YP_443664.2| flagellar biosynthesis protein FlhB [Burkholderia thailandensis E264] Length = 405 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL ++P L L + + + + +++ Sbjct: 67 TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355 >gi|330953765|gb|EGH54025.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae Cit 7] Length = 378 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|167582700|ref|ZP_02375574.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis TXDOH] Length = 405 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ +TEA + K+ E A EG SRE + F+ + A P + + LH Sbjct: 7 EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + D + ++ LSL ++P L L + + + + +++ Sbjct: 67 TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 125 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + F+R++ G+ RI+SI + S K ++VG I I++ + +L + H+ Sbjct: 126 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L A + M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P +K Sbjct: 186 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355 >gi|153834147|ref|ZP_01986814.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] gi|148869517|gb|EDL68515.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] Length = 376 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T+ ++ D + + + + L+ + + + Sbjct: 60 IMSRLF-DLTRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K+ LV + + + ++ Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQEIKDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|167040311|ref|YP_001663296.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514] gi|166854551|gb|ABY92960.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514] Length = 360 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 11 QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A + +P +LL + + S +Q V + Sbjct: 71 TYSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAF 130 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV +KS K+ ++ I+ L Y + + + IL Sbjct: 131 KFERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++ Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 310 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 311 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358 >gi|134300232|ref|YP_001113728.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens MI-1] gi|134052932|gb|ABO50903.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens MI-1] Length = 354 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 187/349 (53%), Gaps = 2/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + KTE + +++++A +G P S + + +L ++ L + I + + Sbjct: 3 EGSQEKTEQATPRRLQEARRKGQVPKSADLNGAILLLITGLFALLYKDNLITHMQTYFFT 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + +++ +D S++V +L ++ + P +L M+ +G L Q + +K Sbjct: 63 YFNNFVKQQQQD-SYLVQILIDFMINVFVVFTPLFILLMVVALGVNLAQVGFLFAPEAIK 121 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P +++ G+K ++S + +KS +KI +VG ++ ++ +L + P ++ Sbjct: 122 PKLDKLNPINGLKNMFSGRAMFELVKSLLKITIVGWVVYAAVRGEMANLLAIFHSPPRTL 181 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L KV++ + + +LD+ + + + +++MSKQE+K+E KQ+ G+P IK Sbjct: 182 LNQVLTIALKVILWGAVVYLGIALLDLLYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + R + + + +AT+++TNPTHYA+AL+Y Q DAPV+VAKG + +A+++R Sbjct: 242 WLRRRQRQLLANLARKEVPQATVVVTNPTHYAVALKYEQP-MDAPVVVAKGTDHMARQIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA ++ +P+ E +AR L+ V I AIP ++AVA+++ +Y K Sbjct: 301 EIARKNEVPVIENVEVARFLYANVEIGHAIPMEMFQAVAEILAMVYRMK 349 >gi|262273550|ref|ZP_06051364.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] gi|262222528|gb|EEY73839.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886] Length = 375 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 184/352 (52%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ A D KTE PS +KI A EGN P SRE ++A + LL FS I+ Sbjct: 1 MSDSSAQD-KTERPSEQKIRKAREEGNLPRSRELVTALMMVASAL-LLSAFSSAIHHTIV 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + + + LL ++ A++ + P L M+ IG+ L++ ++ Sbjct: 59 SVSEMTLNIDKDTIFSPDKMGELLWQSAILATQALAPLFALIMLVSIGANLLRGGWNIST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKRI+S N+LV +KS +K+ +G + + ++ Sbjct: 119 KAMMPKLSKLNPLSGIKRIFSANSLVELIKSILKVTFIGGALYWLINHYLNEIIALQHTR 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L + L + + VL++ +S +++ KLKM+KQE+K+E K + G P Sbjct: 179 LSAAIPAFLDLLWTGLFVYGLVLLFIAVLEMPYSSYEYIKKLKMTKQEVKEEHKNTEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + + A +IITNPTHYA+AL+Y ++ +AP ++AKG + A Sbjct: 239 EIKARIRQLQRQMSQRAFAKTVPTADVIITNPTHYAVALKYDLSKANAPFVIAKGVDQAA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++R+IA +H +P+ E P LAR+++ IP Y AVA ++ ++ Sbjct: 299 LQIRQIAQQHGLPVVEVPPLARAVYYSTNEWQEIPAQLYVAVAHVLNYVFQL 350 >gi|330964680|gb|EGH64940.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 369 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 186/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ EG S+E + +L LL F GI + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLL-MFGAGIAQMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ + D S++ L L A +++P L+ + + ++ + + Sbjct: 60 ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ +KR++S + LV +KSF K +++ + + L++ ++ Sbjct: 120 KSLMPKFSRMNPAARLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|296103646|ref|YP_003613792.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058105|gb|ADF62843.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 381 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + KTE P+ + + A EG P SRE + +LA LL + Sbjct: 1 MSEQNDS-EKTEDPTPHRKQKAREEGQVPRSRELTSLLMLLAGWGLLLVAGGWLAKQLLH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L + + + D ++ L A ++P + + + + + ++ Sbjct: 60 LLHNGL-TFDRLLVSDPQQMLHHAGSLLGMAFLALLPFVGGLFLTAVATPSLIGGLNMSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K + K+++ GIKR++S + +KS +K+ L G + L N + + Sbjct: 119 KALKFNVKKLNPISGIKRLFSAQMVSEMVKSILKVTLAGIGGGLFLWFNKGKFISLMYEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + +++I+L + + D+ + + KL+MS +EIKDE K G+P Sbjct: 179 LRMALGDISALLMGCMLVIILSLIPMVAFDVVYQLWSNFKKLRMSLKEIKDEFKNQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK++ + + R + +MM A +++ NPTHY++AL+Y + AP++VA G LIA Sbjct: 239 LIKSKVRQLQRQMAQQRMMSDVPTADVVVNNPTHYSVALKYQEGAMGAPMVVASGSGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E+ +P+ E P LAR+L++ + +P Y AVA+++ +Y K Sbjct: 299 LRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYGLK 351 >gi|118133499|gb|ABK60543.1| flagellar biosynthetic protein FlhB [Clostridium novyi NT] Length = 575 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 181/348 (52%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G S+E + +L I LL S+ D+ Sbjct: 226 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 285 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L + + ++ ++ + + +P +L M+ G+G+ L+Q + + +KP Sbjct: 286 FTNYLNMNL-NSGSLQSIIVTIAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 344 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G K+I+S+ ++ +K I ++G + L N+ +L S I+ Sbjct: 345 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 404 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + L + + ++D + Q+ ++MSKQEIK+E KQ G+P IK + Sbjct: 405 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 464 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM++ A+++ITNPTH A+AL+Y ++ AP LVAKG + IA K+++ Sbjct: 465 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 524 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+ +PI E LAR +FK+V + S IP Y+AVA+++ +Y K Sbjct: 525 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLK 572 >gi|20807870|ref|NP_623041.1| flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] gi|20516434|gb|AAM24645.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] Length = 362 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 180/348 (51%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ ++A +G SRE + ++ + + F + V + L LL Sbjct: 13 GEKTEPATPKRRQEARKKGQVFQSREITSALVVVTGFLMINLFLQSFLGRVGNLLKFLLI 72 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + + I + ++ + +P +L + S Q V + Sbjct: 73 TYSGANDDVFNTAGIWKIFYYVVNQIVLISVPVILAIFAVSLISTYFQVGFVFTAEPLTL 132 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV +KS K++++ I+ L Y + + + +L Sbjct: 133 KFERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLL 192 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + I I + + L V+D + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 193 RYTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAE 252 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH+A+AL Y NDAPV+VAKG++L+A K+++ Sbjct: 253 IRKKQRQISTRRMMQDLKKADVVITNPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKE 312 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + +IPI E LA++L+ + IPP Y+AVA+++ +Y + Sbjct: 313 EAEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVYSLR 360 >gi|172059259|ref|YP_001806911.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria MC40-6] gi|171991776|gb|ACB62695.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MC40-6] Length = 399 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A +P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + D ++ S+ ++P L L + + + + +++ Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 FGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351 >gi|226939714|ref|YP_002794787.1| FlhB1 [Laribacter hongkongensis HLHK9] gi|226714640|gb|ACO73778.1| FlhB1 [Laribacter hongkongensis HLHK9] Length = 389 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TE + ++ E A EG P SRE + F+ + + L+ + +Y Sbjct: 1 MAE-DSDLERTEEATPRRREQAREEGQVPRSRELATFTVTMTGVAMLVAYGG-VLYQQLK 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + T+ L+ L ++P L + + + + + L+ Sbjct: 59 ELFARTLTFTRATLDAEDAAQLALRGGLTDGLVSILPILGVLFVLALVTPALIGGWNLSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P F +++ GIKRI+S+ + K+ +K +L+G + T + ++ + Sbjct: 119 KAVEPKFSKINPLSGIKRIFSVQGAIEGAKAILKSLLIGGVATWVIWNERAELVSLTRLS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A L+++ + L ++D+ + Q+ L+M+K+++K E+K+S G+P Sbjct: 179 LDQALARAVDLTLHTLLIVAGAMVLLVLIDVPFQLWQYSKNLRMTKEDVKKEMKESEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R R +MM A+++ITNPTHYA+ALRY AP ++AKG +A Sbjct: 239 EVKGRIRQLQREAARRRMMSDVPNASVVITNPTHYAVALRYE-DGMAAPKVIAKGSMKVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ ++A E+ + I P AR+L+ I IP Y A AQ++ ++ + Sbjct: 298 ERIIELARENRVTILRAPPFARALYFNSEIGDDIPAALYSAAAQVLAYVFQLR 350 >gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum D str. 1873] Length = 610 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 182/348 (52%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G P S+E + +L I LL S D+ Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVPKSKEVNSAIILLTSTIILLTLGEYVANSFKKDIIEF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + +L + S ++ ++ + + +P ++ M+ GIG+ L+Q + + +KP Sbjct: 321 FTNYLNIEL-NSSSLISIIVTVLWRFMIVFLPVVVPLMIMGIGANLLQTGYINSKEPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G K+++S+ ++ +K I ++G L N+ +L + I+ Sbjct: 380 QLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFAGYGFLKSNFKKVLSMTNLRFPVII 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + L + + + D + Q+ ++MSKQE+K+E KQ G+P IK + Sbjct: 440 TSFLKLTTNIFFRVSLIMFAIALTDFIYQKFQFKKDMRMSKQEVKEEFKQMEGDPQIKGK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ A+++ITNPTH A+AL+Y +++AP+LVAKG + IA K+++ Sbjct: 500 IKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGQDNAPMLVAKGSDYIAIKIKQ 559 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+++PI E LAR +FK+V I + IP Y+AVA+++ +Y K Sbjct: 560 IAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLK 607 >gi|167037650|ref|YP_001665228.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856484|gb|ABY94892.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 360 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 11 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 71 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 130 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 131 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 310 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + IPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 311 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358 >gi|162139705|ref|YP_877991.2| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium novyi NT] Length = 610 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 181/348 (52%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + K+ +A +G S+E + +L I LL S+ D+ Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L + + ++ ++ + + +P +L M+ G+G+ L+Q + + +KP Sbjct: 321 FTNYLNMNL-NSGSLQSIIVTIAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ G K+I+S+ ++ +K I ++G + L N+ +L S I+ Sbjct: 380 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + L + + ++D + Q+ ++MSKQEIK+E KQ G+P IK + Sbjct: 440 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM++ A+++ITNPTH A+AL+Y ++ AP LVAKG + IA K+++ Sbjct: 500 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 559 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+ +PI E LAR +FK+V + S IP Y+AVA+++ +Y K Sbjct: 560 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLK 607 >gi|115350237|ref|YP_772076.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria AMMD] gi|115280225|gb|ABI85742.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria AMMD] Length = 399 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ ++TEA + ++ E A EG SRE + F+ + A +P + + Sbjct: 1 MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + D ++ S+ ++P L L + + + + +++ Sbjct: 60 MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLAMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + A V + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ V I IP Y AVA+++ +Y + Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351 >gi|167838295|ref|ZP_02465154.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis MSMB43] Length = 401 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ ++TEA + K+ E A EG SRE + F+ +L+ Y + S I Sbjct: 1 MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLSGPIGEHLR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + D + ++ LSL + P L L + + + + +++ Sbjct: 59 TMMRAAFSFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMALGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R++ G+ RI+SI + S K ++VG I I++ + +L + Sbjct: 119 KTFELKFDRLNPVTGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LDAALAGALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPT +A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTRFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH +P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 ARIRELAAEHRVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351 >gi|148269163|ref|YP_001243623.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1] gi|281411461|ref|YP_003345540.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila RKU-10] gi|147734707|gb|ABQ46047.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1] gi|281372564|gb|ADA66126.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila RKU-10] Length = 374 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 186/348 (53%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +TE + +K EG AP+SRE ++ + L + L F G+ +T D+ Sbjct: 29 AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ E+ ++ + ++ ++ M+ G+ +Q + +KP Sbjct: 89 LS------FEETEDLLVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKALKP 142 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ N + Sbjct: 143 DLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVNDAF 202 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK R Sbjct: 203 ANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIKRR 262 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ + +R +MME +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ + Sbjct: 263 QRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKIIE 322 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK Sbjct: 323 IAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370 >gi|302343745|ref|YP_003808274.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM 2075] gi|301640358|gb|ADK85680.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM 2075] Length = 364 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 189/354 (53%), Gaps = 3/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++N A KTE P+ ++ A +G S+E + A L+ L + F +Y ++ Sbjct: 1 MADNTA-QEKTEKPTPRRRSKAREKGQVAKSQELGSIGVLFAGLMCL-YAFGGFVYDQSA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S ++ + L L R + P +L ++ G+ + Q +L Sbjct: 59 TMMTHILSRAAETPVSLAQVHNLSIDLMGHFLRTLAPFMLAVVLAGVAVNVAQTGFMLAT 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SA 179 + ++P K+++ EG+K+ S+ LV +K+ KI +VG + + L + + Sbjct: 119 SRLRPDLKKINPLEGLKKFVSMRMLVEAIKNTGKICVVGLVAYLVLADELPNFPNIGKLG 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 ++L + ++ + L + L +LD + +Q+ LKMSKQEIKDE KQ+ G+ Sbjct: 179 GLTAMLIYIADVCLRIFLWSLAAMFILAILDYAYQKYQFEKGLKMSKQEIKDEFKQTEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K+R + + R R +MM A +A ++ITNPTH A+A+ Y + DAP +VAKGQN I Sbjct: 239 PHVKSRIRQLQRERAMKRMMAAVPQADVVITNPTHLAVAIFYQAGQMDAPEVVAKGQNKI 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A++++ +A E+N+PI E+ LA++L+K V + IP + AVA ++ +Y +K Sbjct: 299 AERIKALAQENNVPIIEDKPLAQALYKSVEVGQRIPFELFGAVAAILAHVYREK 352 >gi|300914395|ref|ZP_07131711.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561] gi|307724369|ref|YP_003904120.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513] gi|300889330|gb|EFK84476.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561] gi|307581430|gb|ADN54829.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513] Length = 363 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 14 QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A + +P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV +KS K+ ++ I+ L Y + + + IL Sbjct: 134 KFERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|297569688|ref|YP_003691032.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus AHT2] gi|296925603|gb|ADH86413.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus AHT2] Length = 353 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ +++ +A +G+ S E + +LA +I L F VT Sbjct: 1 MAEEQSGQEKTEKPTERRLLEARKKGDVAKSMEVPSAAVLLAGVIVLYFTGERMFNQVTG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + L ++ + +S ++ P +L + + + +Q + Sbjct: 61 MMQFYLGNLDTLNLS-PGNMPAISRQALISIFDVLWPLMLTVFIVALLANYMQIGVLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +++ +G R++S L NF KS K+ +VG + + +L + Sbjct: 120 EKMKPKLEKIDPLKGFGRLFSKQALANFFKSMAKMGVVGYVAYSEVKRALNEILPLMDKA 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P+ I+ T + + L IA + +D + Q+ K+KM+KQ++KDE KQ+ G+P Sbjct: 180 PYPIVMFMTETAFWIFLKCALAIAIIAAIDYAFQRWQFMEKMKMTKQDMKDEGKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R ++I R +MM +A +++TNPT A+A++Y AP ++AKG ++A Sbjct: 240 HVKGRIRAIQTEMARKRMMAEVPKADVVVTNPTRLAIAIKYDALTMPAPKVLAKGAGVVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH +PI E+ LA++L++ V I+ IP ++AVA+++ +Y+ + Sbjct: 300 GKIREIAQEHEVPIVEDKPLAQALYQTVEIDQTIPENLFQAVAEVLAYVYNLR 352 >gi|114570480|ref|YP_757160.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10] gi|114340942|gb|ABI66222.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10] Length = 363 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 183/352 (51%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ ++++DA +G+ S+E + + A L L F F ++ Sbjct: 1 MAEGEDDSQKTEEPTQRRLDDARKKGDVAKSQEIPGWFVLAAGLALLSFIFPMMSRALAG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L V + + ++ L+ ++ +V + L + G + +Q+ + Sbjct: 61 NLEVFFEQPHDFAI-NPGAMMGLMQAVAWQVVAIVGLPIGLLAVAGFAGHYVQQGMLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ EG KR + L NF+K K+ LV + + + + + Sbjct: 120 EKIQPKLSKLNPIEGFKRNFGPQGLANFLKGVGKMALVAVAAFLVIYPKREILAGLPALD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S+L ++L+ L A + LD + + + +MS++EIKDE+KQS G+P Sbjct: 180 IGSLLSLVRQGAIELLLAALTVYAVIAGLDYIFQRQSFMKRNRMSRREIKDEMKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ + + + + R + +MM AT+++TNPTHYA+AL Y+Q E APV VAKG + +A Sbjct: 240 LVRAKLRQLRQERSQRRMMTKVPDATVVVTNPTHYAIALHYVQGETPAPVCVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++R++A EH++PI E+P LAR+L ++ IP ++AVA+++ + Sbjct: 300 LRIRELAEEHSVPIVEDPPLARALHATADLDEEIPTEHFQAVAKVVGYVLSL 351 >gi|119775419|ref|YP_928159.1| flagellar biosynthesis protein FlhB [Shewanella amazonensis SB2B] gi|119767919|gb|ABM00490.1| flagellar biosynthetic protein FlhB [Shewanella amazonensis SB2B] Length = 377 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 176/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END +TE P+ +++E A +G S+E + +LA + L P + Sbjct: 1 MAENDTSQERTEEPTGRRLEQAREKGQVARSKELGTAAVLLAAAVGFLML-GPSLGKAMH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + ++ ++ D + ++ + ++ V+ +L+ ++ + + Sbjct: 60 NVMTMTMVQSREQVFDTNSMLNIWIPIAKELGLPVLGLVLVLAALAFAGNIVLGGIIFSS 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N V P ++S G KR++ + L+ K K +V L+ + ++ + + Sbjct: 120 NGVLPKASKMSPLAGFKRMFGLQALMELGKGLAKFSVVAVAAYFLLSFYFPEIIQISAEH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S ++HA + + +++ + + V+D+ + +LKM+KQE+KDE K + G P Sbjct: 180 LPSNVFHALDLLTWMFLLLCSSMLIIAVIDVPFQIWNHKKQLKMTKQEVKDEYKDTEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +MM +A +I+ NP H+A+AL+Y + AP ++AKG + +A Sbjct: 240 EVKGRIRQMQREIAMRRMMAEVPKADVIVVNPEHFAVALKYDAKRSPAPFVLAKGVDAVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+++ +N +P + AVAQ++ ++ + Sbjct: 300 FKIREIAREYDIAIVSAPPLARAIYHTTKLNQQVPEGLFTAVAQVLAYVFQLR 352 >gi|225375342|ref|ZP_03752563.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM 16841] gi|225212831|gb|EEG95185.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM 16841] Length = 367 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 90/357 (25%), Positives = 174/357 (48%), Gaps = 5/357 (1%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +++ KTE ++KK+ +A +G S+E + ++ + L F S + + Sbjct: 9 AKDGPGGEKTEPATAKKLREAREDGKVVKSKELTAAFDLIILFLVLKIFVSFVGNRLMNS 68 Query: 62 LHVLLASATQRKLEDISHI-----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + E+ + L++ + + +P + +IQ Sbjct: 69 FVDIYGRIPDIVRENAVDVTEKSVAALMSDALIQILIVCVPFFAFGFVVTALISVIQVGW 128 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + ++P F + + G KRI+S +++ +KS +KI ++ + S+ + + Sbjct: 129 KVTGKPLQPKFDKFNPINGFKRIFSKDSIFELVKSILKIFVIVYVAYTSIRGHAQDIFIL 188 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + + I L + + D + +++ +KM+KQE+KDE K + Sbjct: 189 YEIPLMQAIMLCGTVIINAGLKISLVYLVIGLADFIYQKYRFNEDMKMTKQEVKDEFKNT 248 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP IK RQ+ R R +MM+ +A ++ITNPTH+A+A++Y + APV++AKG+ Sbjct: 249 EGNPEIKGRQRQRMREASRRRMMQDVPKADVVITNPTHFAVAIKYDAETSKAPVVLAKGE 308 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A+K+++ A EH+I I E LAR L+ V I IPP Y+AVA+++ +Y+ + Sbjct: 309 DYLAQKIKEAAREHHIEIVENKPLARMLYANVDIGQEIPPELYQAVAEILAMVYNMR 365 >gi|254491439|ref|ZP_05104618.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxidans DMS010] gi|224462917|gb|EEF79187.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxydans DMS010] Length = 377 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E A KTE P++K++++A N+G P SRE + ++A + LLF I S+ Sbjct: 1 MAEQSA-QEKTEEPTAKRLDEARNKGQVPRSRELTTVMVLIASAVALLFMGKNIIASMAQ 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ S T+++L D ++ + + + + L + ++ + + + + Sbjct: 60 VMNKSF-SFTRKELFDPMAMIHHFIYTIETIAFDLSMFLGVTVLAALAAPALIGGWNFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +R+ +G+KRI+ L+ K+ K ILVG I T L +L Sbjct: 119 QAMAPKGERMDPLKGLKRIFGPQGLIELAKALGKFILVGVISTAILWSIRDQLLTLGRQE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + V + I + + ++D+ + +L+M+KQE+KDE+K++ GNP Sbjct: 179 VNVAMADLGYLTMWVFLAICASLILIALIDVPFQIWNHNRQLRMTKQEVKDEMKETDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MM+ A ++ITNPTHYA+ALRY QT+ APV+VAKG + I+ Sbjct: 239 EVKGRIRRMQVELSQQRMMQDIPSADVVITNPTHYAVALRYDQTKTGAPVVVAKGADFIS 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R +A +++PI P L R+++ I IP Y AVAQ++ ++ + Sbjct: 299 QQIRLVAEHNDVPILSAPPLTRAVYYSTEIGDEIPSGLYIAVAQVLAFVFQLR 351 >gi|330961236|gb|EGH61496.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 378 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 184/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGSGGLLIFGSD-IAEMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + T+ L D S++ L L A +V+P L+ ++ + ++ + Sbjct: 60 ALMRDNFTITRETLMDQSYMGKALLSSGLHALVVVLPFLIAMLLAALVGPILLGGWLFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR+++ + LV +KS K +++ + L ++ Sbjct: 120 KPLMPKFSRMNPAAGLKRMFAPSALVELLKSLGKFLIILAVALAVLNSERKDLIAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + +A + +D+ + +Q + KL M+KQE++DE K S GNP Sbjct: 180 LEQAMIHSLIVVGWSSFWMACGLAFIAAVDVPFMLYQAHKKLLMTKQEVRDEHKNSDGNP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGSDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I + I I E +LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|256750759|ref|ZP_05491644.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus CCSD1] gi|256750342|gb|EEU63361.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus CCSD1] Length = 363 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 14 QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA +M++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPSELYQAVAEVLAYVYSLK 361 >gi|119503678|ref|ZP_01625761.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2080] gi|119460740|gb|EAW41832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2080] Length = 384 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +TE P++K+++ A +G SRE + +L C + L + + Sbjct: 1 MAEEQTGQERTEEPTAKRLQQAREKGQVARSRELNTLLMLLPCAVAL-WLTGEFAMDAVT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + ++ S + L +S +++P L L + + + + +L Sbjct: 60 RLFTGALTPPSEAMKVTSEVAPFLGATLMSGLEMIVPFLALTVFVALLGPSVMGGLIFSL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G RI+S +L+ +KS +K LV + + L ++ IS Sbjct: 120 KSMSPGLDKIDPIKGFGRIFSRKSLLELVKSLLKFFLVSGVAVLVLLSFEREVMGLISLP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A + LI + + + +D+ + KL+M+KQE+KDE+K++ GNP Sbjct: 180 VGEGIAQAGRMIMLTLIFLSASLILVVAIDVPFQLWDHTRKLRMTKQEVKDEMKETDGNP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + R +M+ A ++ITNPTH+++AL+Y Q N AP ++AKG + +A Sbjct: 240 EMKGKIRQKQREIADRRMLADVPTADVVITNPTHFSVALKYDQEGNTAPRVLAKGADHMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R IA H+I I+EEP LAR+LF IP + AVA+++ ++H + Sbjct: 300 MQIRHIARAHDIVIYEEPPLARALFASTEAGDEIPGNLFLAVARVLAYVFHLR 352 >gi|320116065|ref|YP_004186224.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319929156|gb|ADV79841.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 363 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + + P + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A +++P +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ EG KRI+S LV KS K+ ++ I+ L Y + + + IL Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + IPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|269138573|ref|YP_003295273.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202] gi|267984233|gb|ACY84062.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202] gi|304558582|gb|ADM41246.1| Flagellar biosynthesis protein FlhB [Edwardsiella tarda FL6-60] Length = 440 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 104/350 (29%), Positives = 174/350 (49%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ KTE P+ +IE A +G P SRE + + L LL ++ + Sbjct: 55 EESDLEKTEDPTPHRIEKAREKGQIPRSRELTSILMLATGLAILLLGGEYLARALAVMIA 114 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L L + ++ L L A ++P LL M+ G + ++ + + + + Sbjct: 115 QGL-HFDHLLLSNDRQMLIQLGMLLQQAVAALMPVLLGLMLVGWCAPMLIGGFLFSPSSI 173 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K R++ G KR++S L +K +K LVG + L + ML I+ Sbjct: 174 KCDLNRLNPLSGFKRMFSSQVLAELLKGILKATLVGWVCGWFLLHYWPRMLRLITEPTLD 233 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + A V ++++L + + D+ + SKL+M+KQEIKDE K+ G+P +K Sbjct: 234 AMGDALHLVGMCGLLVVLGLLPMVGFDVFYQVWSNLSKLRMTKQEIKDEFKEQEGDPHVK 293 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA+++ Sbjct: 294 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIAQRI 353 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K Sbjct: 354 KALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 403 >gi|15643671|ref|NP_228717.1| flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8] gi|4981445|gb|AAD35990.1|AE001755_13 flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8] Length = 374 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 188/348 (54%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +TE + +K EG AP+SRE ++ + L + L F G+ +T D+ V Sbjct: 29 AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQVF 88 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ E+ ++ ++ +V ++ M+ G+ +Q + +KP Sbjct: 89 LS------FEETEDLLMNAVNIFKDVLLIVGAFVVFSMVAGVMIGALQTRFLFAPKALKP 142 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ + + Sbjct: 143 DLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMSVNDAF 202 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK R Sbjct: 203 ANFWDITSEITLKSGMILLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIKRR 262 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ + +R +M+E +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ + Sbjct: 263 QRQMMYDILRRRMLEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLAFKIIE 322 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK Sbjct: 323 IAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYAKK 370 >gi|87119470|ref|ZP_01075367.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121] gi|86164946|gb|EAQ66214.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121] Length = 380 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 110/353 (31%), Positives = 181/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE SSKK+++A N+GN P S++ S +L L S + S Sbjct: 1 MAENEDGAEKTEDASSKKLDEARNKGNLPRSKDLSSALLLLIAAASLYATGSLLAQDM-S 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ ++ + D + +V L+ S+S ++ +++ + GI + + Sbjct: 60 NVFQFNFVLSRADMFDTAKMVIHLSDSSISMMDSLLVMMIVLAIAGIVGSVALGGFNFSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++S+N+LV +KS K+ LV + L ML + Sbjct: 120 EPLIPKLSKMNPISGIKRMFSVNSLVELLKSIAKVSLVLVVAFFVLKIYLPEMLLVPFQS 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L HA V I + L + + +D+ + KLKM+KQE KDE K + G+P Sbjct: 180 LELALGHAINVVIWAFIYVSLAVLLIAAVDVPYQAWSHKDKLKMTKQETKDEYKNAEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R +MME A +IITNPTH+++AL+Y AP L+AKG + +A Sbjct: 240 QIKARIRQAQRQASMRRMMEDVPNADVIITNPTHFSVALKYEAGVKGAPKLLAKGNDFVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I HNIP+ + P+LARS++ I IP +++VAQ++ +Y K Sbjct: 300 LKIREIGTFHNIPVVQSPALARSIYHYTEIGEEIPTGLFQSVAQILAYVYQLK 352 >gi|269961633|ref|ZP_06175995.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3] gi|269833674|gb|EEZ87771.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3] Length = 376 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F S+ S Sbjct: 1 MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ D + + + + L+ + + + Sbjct: 60 IMSRLF-DLKRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K+ LV + + + ++ Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + LDI + Q +LKM+KQEIKDE K++ G P Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVALDIPFQIWQHADQLKMTKQEIKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351 >gi|150395473|ref|YP_001325940.1| flagellar biosynthesis protein FlhB [Sinorhizobium medicae WSM419] gi|150026988|gb|ABR59105.1| flagellar biosynthetic protein FlhB [Sinorhizobium medicae WSM419] Length = 360 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 155/350 (44%), Positives = 245/350 (70%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ D+KTEAPS KKI DA ++GN P SRE + F+S LA I+++FF + G +V Sbjct: 1 MADDQDKDSKTEAPSEKKISDATDKGNVPFSREVTAFASTLAIYIFVVFFLADGAANVAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +L+ + V L++H+ L ++ L++P +L ++FG+GS + Q +P L Sbjct: 61 ALKDIFEQPEAWRLDTATDAVALISHVVLKSATLLMPIFILLILFGVGSSIFQNLPRPVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G KRIY + LV F KS K+I+V ++ + L +YF LD + ++ Sbjct: 121 DRIQPKWNRVSPVAGFKRIYGVPGLVEFGKSLFKVIVVSIVVVLVLWNDYFATLDMMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I +++++I++L ATL ++D+ W+ H WY++LKM+KQE+KDE+KQS G+P Sbjct: 181 PVMIFTTMTSDLKQIIIVVLFATATLAIVDLFWTRHHWYTELKMTKQEVKDELKQSQGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+ R R R +M+ + RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A Sbjct: 241 IVKSRLRSLQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 >gi|253998503|ref|YP_003050566.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4] gi|253985182|gb|ACT50039.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4] Length = 384 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE + K++E A EGN P SRE + +LA + + S ++ Sbjct: 1 MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D + ++ ++ S P L + I + + ++ Sbjct: 60 TMGGSL-HFERALAYDSNLLLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLIGGWNVSN 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F R++ G+ + S N LV +K+ K ILVG++ + + + T+L Sbjct: 119 QAFVPKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDTILSLALLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ + + K I+ + + +D+ + + + LKM+K+E+K E K+S GNP Sbjct: 179 LHTSIAEVEDMLLKSFFFIVGALVLIAAIDVPYQLTTYANNLKMTKEEVKQESKESEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R R +MM +A ++ITNPTHYA+A++Y + APV++AKG + +A Sbjct: 239 QIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELGMRAPVVIAKGADAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH I E P LAR+L+ + IP Y AVA++I ++ + Sbjct: 299 LKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEIIAYVFQMR 351 >gi|170287825|ref|YP_001738063.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2] gi|170175328|gb|ACB08380.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2] Length = 374 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 186/348 (53%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +TE + +K EG AP+SRE ++ + L + L F G+ +T D+ Sbjct: 29 AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ E+ ++ + ++ ++ M+ G+ +Q + +KP Sbjct: 89 LS------FEETEDLLVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKALKP 142 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ EG KR++S+ +LV +KS +K+ +VG ++ L + M+ N + Sbjct: 143 DLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVNDAF 202 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + ++ + + + L V D + ++ ++M+KQE+KDE+K+ GNP IK R Sbjct: 203 ANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEMKDELKEVEGNPEIKRR 262 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ + +R +MME +A ++ITNPTH+A+AL+Y +APV+VAKG + +A K+ + Sbjct: 263 QRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKIIE 322 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+++P+ PSLAR+L+ + I IP FY+ VA+++ +Y KK Sbjct: 323 IAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370 >gi|254478867|ref|ZP_05092231.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum DSM 12653] gi|214035180|gb|EEB75890.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum DSM 12653] Length = 360 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 179/348 (51%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ ++A +G SRE + I+ + + F + V + L LL Sbjct: 11 GEKTEPATPKRRQEARKKGQVFQSREITSALVIVTGFLMIHLFLQSFLGRVGNLLKFLLI 70 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + + I + ++ + +P +L + S Q V + Sbjct: 71 TYSGANDDVFNTAGIWKIFYYMVNQVVLISVPIMLAIFAVSLISTYFQVGFVFTAEPLTL 130 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R++ EG KRI+S LV +KS K++++ I+ L Y + + + +L Sbjct: 131 KFERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLL 190 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + I I + + L V+D + + ++ + LKMSK++IK+E K++ GNP IK Sbjct: 191 RYTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAE 250 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++I NPTH+A+AL Y NDAPV+VAKG++L+A K+++ Sbjct: 251 IRKKQRQISTRRMMQDLKKADVVIINPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKE 310 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + +IPI E LA++L+ + IPP Y+AVA+++ +Y + Sbjct: 311 EAEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVYSLR 358 >gi|150390466|ref|YP_001320515.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens QYMF] gi|149950328|gb|ABR48856.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens QYMF] Length = 361 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 181/345 (52%), Gaps = 1/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ KK +D+ +G S+E + ++ + L F S ++ S + Sbjct: 12 EEKTERPTPKKRKDSREKGQVLQSKELNSAFLLIGAFVILGLFSSYIGMTMKSFTRSIYV 71 Query: 68 SATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 L I ++ LL + + +++ P + ++ G+ +Q + + Sbjct: 72 EYLNTDYLFSIQNLYRLLVYSLYNLLKIIAPISIASLLIGLAVSYLQVGYLFTTKTLAFK 131 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +++ EG K+I+S+ +V KSF+KI LVG I+ T+ + ++ + I+ Sbjct: 132 LSKLNPIEGFKKIFSLKAIVELAKSFIKIGLVGYIVFQYAQGQLETIFNTMAMDMDGIIQ 191 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + I + + L D + +++ LKM+KQE K+E KQS GNP IK++ Sbjct: 192 VLIYILVNIGIRAGVVLLVLAGFDYLYQKYEYDKNLKMTKQETKEEYKQSEGNPQIKSKI 251 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K R +MM+ +A +IITNPTH+A+A++Y + AP ++AKGQ+++A+ ++K+ Sbjct: 252 KEKQRQMSTKRMMQEVPKADVIITNPTHFAIAIQYNPDDFQAPRVIAKGQDILAQSIKKV 311 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E+++PI E LARSL+ V I + IP Y+AVA+++ +Y Sbjct: 312 GLENDVPIVENKPLARSLYDTVEIGAFIPTELYQAVAEILAYVYR 356 >gi|297617157|ref|YP_003702316.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus DSM 12680] gi|297144994|gb|ADI01751.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus DSM 12680] Length = 366 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 179/348 (51%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 KTE + ++ +++ +G S + + +L L F + + Sbjct: 16 EGGEKTEKATPRRRQESRRKGQVFRSVDLNSAVILLVGFAVLHFTTPYMLTGIQGFFSRY 75 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ +L + V LL + L +++ P + ++ G+ L+Q V + Sbjct: 76 LSDRALTQLTPATFHVMLLDAILL-MAKISFPVIGAVLVAGLLVNLLQVGFVFAGEPLSI 134 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +RV+ EG KRI+S+ L+ +KS K++L G ++ L +N + F+ P S++ Sbjct: 135 KPERVNPVEGFKRIFSLRALIELVKSVAKVVLTGWVVYSVLKKNLYLFPRFVDMEPVSMV 194 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ + I + + + +LD + + + L+MSK+E+K E KQ+ G+P I+++ Sbjct: 195 MSLGNIIFEMAMKIGVVLLVVGLLDYLYQWWEHEKSLRMSKEELKQEYKQTEGDPQIRSK 254 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ R +MM +A ++ITNPTH+A+AL+Y APV+ AKGQ+ +A ++R+ Sbjct: 255 QRQKQREMAMRRMMAEVPKADVVITNPTHFAVALKYEAEAMTAPVVTAKGQDFLALRIRE 314 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A EH + + E P LAR+++ I IP Y+AVA+++ +Y +K Sbjct: 315 VAMEHQVALVENPFLARTIYYSTEIGDPIPETLYQAVAEVLAFVYRQK 362 >gi|316932838|ref|YP_004107820.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris DX-1] gi|315600552|gb|ADU43087.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris DX-1] Length = 357 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 189/350 (54%), Gaps = 2/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D KTE P+ KK++DAL G+ S+E + + I + L F + L Sbjct: 2 SDDSDEKTEEPTQKKLDDALKRGDVAKSQEVNTWFLIAGGTLVLSSFHGSIGAGILGPLR 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L+ + +++ I + + + + + +P L+ M+ + LIQ V + + Sbjct: 62 SLIEKSWMLRVDGDGLIALTKSLMYATVAAIGVPLFLV-MITAVIGNLIQHRLVFSAEGL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P ++S +G KR++ L NF+K K++ +G ++ L + + ++ + + Sbjct: 121 TPKLSKLSPLQGAKRVFGKQALANFLKGLFKVVALGIVMVAVLYPEHDRLDALLTMDVAA 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 +L K+L ++ +A + V D + Y QW+ K KMS QEIKDE KQS G+P IK Sbjct: 181 LLGVTVTLTLKLLGAVVAMLAFVAVADYFFQYRQWHEKQKMSLQEIKDEYKQSEGDPHIK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + R++ +MM A+++ITNPTH+++AL+Y + AP+ VAKG + +A K+ Sbjct: 241 GRLRQLRYQRMKKRMMAEVPGASVVITNPTHFSVALKYERG-MPAPICVAKGVDAVAFKI 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A E+N+PI E LAR+L+ V I+ IP Y+AVA++I + + K Sbjct: 300 REVAKENNVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVIGYVMNLK 349 >gi|288942622|ref|YP_003444862.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM 180] gi|288897994|gb|ADC63830.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM 180] Length = 384 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 176/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ ++EAP++K++ ++ +G SRE + F ++ +LLF + S Sbjct: 1 MAENENGQERSEAPTAKRLRESREKGQVARSRELNTFIILIVGGAFLLFLGGGMAARI-S 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + + + D +V L HL A ++ P L M+ + ++ + Sbjct: 60 QLMIDGWTLERGLIFDEGLLVPHLQHLLGRALLILAPLFGLLMVIALMGPILVGGLNFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +V+ G+KR++S+ L+ +K K LVG + T+++ + +L Sbjct: 120 QALMPKFSKVNPISGLKRVFSVQGLMELVKGLGKFGLVGIVATLAIMSIWGNLLTLGELP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++ + + +D+ + +L+M+ QEIKDE K++ G P Sbjct: 180 VEQAIVQTVHMAAWLFLIAAAALLVVAAIDVPFQVWNHQKQLRMTLQEIKDEFKETEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MM +A ++ITNPTHYA+A+ Y+ AP L+AKG + +A Sbjct: 240 EVKGRIRQLQHEMSQRRMMSEVPKADVVITNPTHYAVAISYVPAIMPAPRLLAKGTDAVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +R +A EH I E P +AR+++ +N IP + AVA+++ +Y + Sbjct: 300 QAIRALAEEHRIVRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQIR 352 >gi|313200589|ref|YP_004039247.1| flagellar biosynthetic protein flhb [Methylovorus sp. MP688] gi|312439905|gb|ADQ84011.1| flagellar biosynthetic protein FlhB [Methylovorus sp. MP688] Length = 384 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE + K++E A EGN P SRE + +LA + + S ++ Sbjct: 1 MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D + ++ ++ S P L + I + + ++ Sbjct: 60 TMGGSL-HFERALAYDSNLLLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLIGGWNVSN 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P F R++ G+ + S N LV +K+ K ILVG++ + + + T+L Sbjct: 119 QAFVPKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDTILSLALLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ + + K I+ + + +D+ + + + LKM+K+E+K E K+S GNP Sbjct: 179 LHTSIAEVEDMLLKSFFFIVGALVLIAAIDVPYQLTTYANNLKMTKEEVKQESKESEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R R +MM +A ++ITNPTHYA+A++Y + APV++AKG + +A Sbjct: 239 QIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELGMRAPVVIAKGADAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH I E P LAR+L+ + IP Y AVA++I ++ + Sbjct: 299 LKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEIIAYVFQMR 351 >gi|260772335|ref|ZP_05881251.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP 69.14] gi|260611474|gb|EEX36677.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP 69.14] Length = 376 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + + Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLIIGSVALMWFGEMLASRLYT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S ++ ++ D S + ++ ++ L+ + + + Sbjct: 60 TMGRFF-SLSREEIFDSSKLFDIIAGTLTHLIFPLLLILITLFVAALIGAAGVGGVSFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +P ++S G KR++ + +LV KS +K++LV + + + + Sbjct: 119 EAARPKLSKISPLSGFKRMFGMQSLVELFKSILKVLLVAGVAFYLIDASKNDLFQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +D+ + Q KLKM+KQEIKDE K + G P Sbjct: 179 YPQNIFHALEILLNFILLISCSLLVVVAIDVPFQIWQHAEKLKMTKQEIKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVALRYKQGTDKAPIVVAKGGDFLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREHEIMIVAAPPLARALYYTTELEQEIPDGLFVAVAQVLAYVFQIK 351 >gi|113969638|ref|YP_733431.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-4] gi|114046868|ref|YP_737418.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-7] gi|113884322|gb|ABI38374.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-4] gi|113888310|gb|ABI42361.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-7] Length = 376 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 164/340 (48%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +L+ L + PGI S++ + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + + + ++ +LL ++ + + + P ++S Sbjct: 72 IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G KR++ + LV K K +V + L+ + +L + + ++HA + Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAIAAYLLLSHYFNDILLLSADHLPGNVHHALDLLV 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A HNI Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ + IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQLR 351 >gi|330808231|ref|YP_004352693.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376339|gb|AEA67689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 378 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 179/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K++ ++ +G S+E + + +LA LL + + Sbjct: 1 MAESESGQDKTEDPTEKRLRESREKGETARSKELNTLAVMLAGAGGLLIYGGGLALDLL- 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L S + L + L H A + P L+ ++ + + + Sbjct: 60 EIMRLNFSLPREVLLTPGSMAQYLLHSGKIAILAIQPVLIFLLLAAVIGPISLGGWLFAA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + L+ +K+F K +LV + L + +L Sbjct: 120 GSLAPKFSRMNPAAGLKRMFSTSALMELLKAFGKFLLVLFVALTVLQSDIDDLLRIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + I + + +D+ +Q KL M+KQE++DE K S G P Sbjct: 180 LEQAIIHSVQLVGWSTLWIACGLILIAAIDVPIQLYQSKQKLMMTKQEVRDEHKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A A ++ITNPTHYA+AL+Y + +APVL+AKG + +A Sbjct: 240 EVKQRIRQLQREVSQRRMMAAIPDADVVITNPTHYAVALKYDPEKGNAPVLLAKGSDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA + + + E P+LARS++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAVANEVMLLESPALARSIYYSTELDQEIPGGLYLAVAQVLAYVYQIR 352 >gi|149182522|ref|ZP_01860995.1| flagellar biosynthesis protein B [Bacillus sp. SG-1] gi|148849782|gb|EDL63959.1| flagellar biosynthesis protein B [Bacillus sp. SG-1] Length = 360 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 182/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 K+E + KK +D+ +G S++ + +LA ++L F S + + Sbjct: 13 GEKSEKATPKKRQDSRKKGQTAKSQDVNTAIILLAVFLFLTFSASYIGDVIFDLFRISFQ 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L S ++ ++ + + L+ P +L+ ++ G+ S IQ + ++P Sbjct: 73 DYMMMDLTQDSFMLIVM-EVLQQVAILLGPIMLVALLAGLFSNYIQVGVMFTAEPLQPKL 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRI+S+ +V +KS +KI VG I + L N +L + + L Sbjct: 132 EKIDPIKGAKRIFSLRAIVELLKSILKIGFVGAITFVILWMNIDEVLGLSFKSAYDSLAA 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 ++ I L + L+V D + + + ++MSKQ+IKDE K + G+P+IK++ K Sbjct: 192 MASLTVQMGIAASLALLFLSVFDYLYQKYDFEKNIRMSKQDIKDEHKNAEGDPLIKSKIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+AL+Y + ++DAP ++AKG + +A+K++ IA Sbjct: 252 QRQREMAMRRMMQEVPEADVVITNPTHYAIALKYDENKSDAPYVIAKGVDYMAQKIKYIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH+I + E LARSL+ I IP F+KAVA+++ +Y K Sbjct: 312 GEHDIIMVENRPLARSLYDSAEIGDTIPEEFFKAVAEILAYVYRMK 357 >gi|323705428|ref|ZP_08117003.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium xylanolyticum LX-11] gi|323535330|gb|EGB25106.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium xylanolyticum LX-11] Length = 357 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 182/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ +DA +G SRE + +A + + F I + + + L Sbjct: 8 GEKTEPATPKRRQDARKKGQVFQSREVTSALVTIAGFLVIYFTVQNSIAEIMNLIKFLFL 67 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + I+ I L + +L++P + + + S Q V L + Sbjct: 68 NYGGASDNVFTINGIYKLFEMVFSVFIKLILPTIATVFIIALISTYAQVGFVFTLETLNF 127 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ +G+KR++S +L+ +KS +KI ++ ++ L Y + + + ++ Sbjct: 128 KLERLNPLDGLKRMFSKRSLLELVKSIIKISILAYVMYSFLIGQYKGIPQLLDMSVQDLI 187 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +L+ I L + L +D + + ++ S L+MSK++IK+E K++ GNP IK+ Sbjct: 188 KYNMNIFAGILLRISLVLVVLGAIDYVYQWREYESNLRMSKEDIKEEFKETEGNPQIKSE 247 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV+VAKGQ+ IA+K+++ Sbjct: 248 IRKKQRQISMRRMMQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQKIKE 307 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +++I I E LA+SL+K I +IPP YKAVA+++ +Y + Sbjct: 308 EAIKYSIAIVENKPLAQSLYKTTEIGDSIPPELYKAVAEVLAYVYSLR 355 >gi|258621117|ref|ZP_05716151.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573] gi|262170893|ref|ZP_06038571.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] gi|258586505|gb|EEW11220.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573] gi|261891969|gb|EEY37955.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] Length = 376 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + + Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S + ++ DI + ++ ++ ++ L+ + + + Sbjct: 60 AMQRLF-SLDREEIFDIGKLFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGINFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|295690541|ref|YP_003594234.1| flagellar biosynthetic protein Flhb [Caulobacter segnis ATCC 21756] gi|295432444|gb|ADG11616.1| flagellar biosynthetic protein FlhB [Caulobacter segnis ATCC 21756] Length = 361 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 202/353 (57%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ P++KTE PS+K++ DA +G+ S + +S+ + ++ +++ Sbjct: 1 MADDTDPESKTEEPSAKRLADARAKGDVVKSADIPQLASLAGAVSVVILAGGWLTRDLSA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+ +A A L +V + +++A +I +L+ G +++ Q +L Sbjct: 61 ALYPFIAHAGTIDLSSAGAMVVM-KQATMAALPPLILVMLVSAFAGAIAHIAQSGFLLTP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP F ++ L +G+ RI+ I+ V F KS VK ++ G I + L + + + + + Sbjct: 120 SKLKPDFSKLDLIKGLGRIFGIDGFVQFAKSAVKFLVTGLIAWMVLKPHVGEVRNLVGMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++L A + +L+ +++F+ D W ++ ++++M+ QE+KDE KQS G+P Sbjct: 180 PAAMLPEALKLSKSLLMAVIIFLTATAAFDWFWQRQRFMNRMRMTLQEVKDEFKQSDGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K +++ I R R +MM+A +AT+++ NPTHYA+AL+Y E AP+ VAKG + +A Sbjct: 240 HVKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEAGETPAPLCVAKGVDELA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R IA EH +P+ E+P LAR+L+ V ++ IP ++AVA++I I + K Sbjct: 300 LKIRAIAEEHGVPVLEDPPLARALYASVEVDEEIPVEHFEAVAKVISFILNGK 352 >gi|239826631|ref|YP_002949255.1| flagellar biosynthesis protein FlhB [Geobacillus sp. WCH70] gi|239806924|gb|ACS23989.1| flagellar biosynthetic protein FlhB [Geobacillus sp. WCH70] Length = 360 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 170/346 (49%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S + + +L + L F + + ++ Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSADINTAIVMLVVFLVLYFLGTFYKEKLLHFMYQSFE 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + L I + L + + LV P ++ + +Q + +K + Sbjct: 73 QYARVDL-TIDSVHRLSITWLKNMAMLVAPIFFAAVIAACLANFLQVGFLFTTEPLKMKW 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R+ +G KR+ S+ +V +KS +KI +VG + L +L + + + L Sbjct: 132 NRLDPVQGFKRMISLRAIVELLKSILKISVVGLVTFALLWFQIDHILSLTTKSISTTLSS 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + + ++MSKQ+IKDE K++ G+P+IK++ K Sbjct: 192 LASLTAKMGLYASSALLFLAIFDYLYQRFDFEKNIRMSKQDIKDEYKKTEGDPLIKSKIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + +A K++++A Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPMVVAKGVDYVALKIKQLA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357 >gi|117919803|ref|YP_868995.1| flagellar biosynthesis protein FlhB [Shewanella sp. ANA-3] gi|117612135|gb|ABK47589.1| flagellar biosynthetic protein FlhB [Shewanella sp. ANA-3] Length = 376 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 164/340 (48%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +L+ L + PGI S++ + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMERAA 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + + + ++ +LL ++ + + + P ++S Sbjct: 72 IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G KR++ + LV K K +V + L+ + +L + + ++HA + Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAIAAYLLLSHYFNDILLLSADHLPGNVHHALDLLV 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A HNI Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ + IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQLR 351 >gi|163852023|ref|YP_001640066.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens PA1] gi|163663628|gb|ABY30995.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens PA1] Length = 354 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 191/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + A L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ ++ VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTH+A+ALRY AP+ VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I + + Sbjct: 299 LRIRAVATDHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351 >gi|192360845|ref|YP_001982207.1| flagellar biosynthesis protein FlhB [Cellvibrio japonicus Ueda107] gi|190687010|gb|ACE84688.1| flagellar biosynthetic protein FlhB [Cellvibrio japonicus Ueda107] Length = 379 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 2/354 (0%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E +D+ KTE PS++++E A EG P SR+ + + +L I L F + Sbjct: 1 MAEGDDSSQEKTEEPSARRLEKAREEGQIPRSRDLTTTAVLLLAAIGLWVFAEFMGGKLL 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 ++ + D + ++ L + P ++L ++ I + +++ Sbjct: 61 GITRENFI-ISRTDIFDTNAMISHLVRAIYQGMLSMAPLMVLLLIASIVGPIALGGWLMS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P R+ G+KRI+S+ +L+ K+ +K+ ++ L M Sbjct: 120 SKAMMPKLSRMDPIAGLKRIFSLKSLIELFKALLKVSIILLTTIWLLFLYAQDMFRISDE 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + H+ I + + +DI ++ KLKMS+Q++KDE K + G Sbjct: 180 AVGNAIVHSLEISIYATIALAATTIVIAAVDIPLQLYEHNKKLKMSRQDLKDEAKDTDGK 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R + + R + +MM A ++ITNPTH+A+AL+Y D P+++AKG + I Sbjct: 240 PEVKGRIRQLQREMAQRRMMANVPMADVVITNPTHFAVALKYDPETMDTPIMLAKGGDNI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+IA HNI E P LAR+++ I+ AIP Y AVAQ++ ++ + Sbjct: 300 ALKIREIAKAHNIETIESPPLARAIYYTTEIDQAIPSGLYLAVAQVLAYVFQLR 353 >gi|186477710|ref|YP_001859180.1| flagellar biosynthesis protein FlhB [Burkholderia phymatum STM815] gi|184194169|gb|ACC72134.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815] Length = 411 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 184/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 D+ KTE+ + +++E A EG SRE + F+ + A + + S I + Sbjct: 12 EDSDLEKTESATPRRLEKAREEGQVARSRELATFALVAAGFLGA-WGMSGMIGEHVQTML 70 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + D ++ + +++P L L + + + + +L+ + Sbjct: 71 RTAFTFNHETVFDPKRAFISAGAVTREGAYMLMPLLALLGLAALLAPMAMGGWLLSTKSL 130 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P+F+R++ G+ RI+SIN + S KI++VG I +++ +L + H Sbjct: 131 APNFQRLNPVSGLGRIFSINGWIQLGMSLAKIVVVGLIGGLAIWHRREDILALATQPLHV 190 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L +A + M + + L +D+ + ++ KL+M+K+E+K E ++S G+P +K Sbjct: 191 ALSNAGHLIAVCCAMTVGGMFLLAAMDVPYQLWSFHKKLRMTKEEVKREHRESEGDPHVK 250 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R +S R+ R +MM +A +++TNPTH+A+AL+Y E AP +VAKG NL+A ++ Sbjct: 251 ARIRSQQRAMARRRMMANVPKADVVVTNPTHFAVALQYTDGEMGAPKVVAKGVNLVAARI 310 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A E+N+P+ E P LAR+L+ V +N IP Y AVA+++ +Y + Sbjct: 311 RELAVENNVPLLEAPPLARALYHNVELNREIPGALYGAVAEVLAWVYQLR 360 >gi|121997283|ref|YP_001002070.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1] gi|121588688|gb|ABM61268.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1] Length = 391 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 89/352 (25%), Positives = 169/352 (48%), Gaps = 2/352 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+ E++ KTE P+ K+ E++ +G P SRE + +L LL +T Sbjct: 1 MAQESEDGQEKTEDPTPKRREESRKKGQVPRSRELTTMLLLLVAAGALLALGPFMGNQLT 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + L + + + D ++ L V+P + + + + + + Sbjct: 61 ALLEWSF-TIDRSHIYDPGIVIERLHEALGRGLLTVLPFIAVMLAAAVIAPTALGGWSFS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P +++S +G +R++ V K+ K++++G + A Sbjct: 120 FHPMQPKPEKLSPIKGFQRMFGTKAAVELGKALGKVLVIGGTAVGLFVLFWDNFYTMSRA 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ L + + +DI + + K++M++QE+K+E KQ+ G Sbjct: 180 PLEPSMAEGMRLFYIFFFLLALSMLVVVAIDIPYQIYDHTQKIRMTRQEVKEEFKQTEGK 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R + R +MME A ++ITNP HYA+AL+Y Q+ AP +VAKG +L+ Sbjct: 240 PEVKQRVREQQREMTNRRMMENVPDADVVITNPAHYAVALKYDQSTMRAPTVVAKGADLL 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A ++R++A E++I IF+ P LAR+L+ ++ IP Y AVAQ++ +Y Sbjct: 300 AARIRELAEENDILIFQAPPLARALYHSADLDQEIPGALYFAVAQVLAYVYQ 351 >gi|326204607|ref|ZP_08194463.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM 2782] gi|325985174|gb|EGD46014.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM 2782] Length = 381 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 178/346 (51%), Gaps = 1/346 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE + KK DA +G SRE + ++ ++ + F ++ L Sbjct: 30 DKTEKATPKKKSDARKKGQVFQSREVTASLILIVTVVAMRIFGGTIYAQLSQYLKKTFNE 89 Query: 69 ATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 D + + L + + ++ V+P LL+ + + Q + + +K Sbjct: 90 YLTIKDAIDFNILANLFIDVLMVLAKTVLPLLLVAFLTALIVNYAQVGILFTMETLKIKG 149 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ G KRI+S+ ++V +KS +KII+VG + L +L I + S+L Sbjct: 150 DRINPLSGFKRIFSLRSVVELLKSIIKIIIVGWVAYSYLKSKTEQVLTLIDTDLMSVLIF 209 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + I + + L D + + + LKM+KQE+K+E KQ GNP IK++ K Sbjct: 210 IADAAFTVALRICMAMVLLGFADYLYQRYDYEKNLKMTKQEVKEEYKQMEGNPEIKSKIK 269 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTH+A+AL+Y ++ AP +VAKGQ+ IA ++++IA Sbjct: 270 QKQRQMSLKRMMQDIPKADVIITNPTHFAVALKYDSEKSAAPFVVAKGQDYIALRIKQIA 329 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + I E LAR+L+ V I AIPP Y+AVA+++ +Y+ K Sbjct: 330 ADNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375 >gi|304316890|ref|YP_003852035.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778392|gb|ADL68951.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 357 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 181/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ +DA +G SRE + +A + + F I + + + L Sbjct: 8 GEKTEPATPKRRQDARKKGQVFQSREVTSAIITIAGFLVIYFTVQNSIEEIMNLIKYLFL 67 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + ++ I L + +L++P + + + S Q V + Sbjct: 68 NYGGASDNTFTVNGIYKLFEIILPVFLKLILPTVATVFLVALVSTYAQVGFVFTSESLNI 127 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ EGIKR++S ++ +K+ VKI ++G ++ L Y + + + ++ Sbjct: 128 KLERLNPLEGIKRMFSRRTILELLKAVVKIGILGYVMYSFLIGQYKGIPQLLDMSVQDLI 187 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ +L+ I + + L V+D + + + S L+MSK++IK+E K++ GNP IK+ Sbjct: 188 KYSLNIFGGILLRIFIVLIVLGVVDYIFQWRDYESNLRMSKEDIKEEFKETEGNPQIKSE 247 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +M++ +A ++ITNPTH A+AL Y NDAPV+VAKGQ+ IA+++++ Sbjct: 248 IKKKQRQISMRRMIQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQRIKE 307 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +++I I E LA+SL+K I +IPP YKAVA+++ +Y + Sbjct: 308 EAIKYSIAIVENKPLAQSLYKTTDIGDSIPPELYKAVAEVLAYVYSLR 355 >gi|218530777|ref|YP_002421593.1| flagellar biosynthetic protein FlhB [Methylobacterium chloromethanicum CM4] gi|218523080|gb|ACK83665.1| flagellar biosynthetic protein FlhB [Methylobacterium chloromethanicum CM4] Length = 354 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ ++ VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDAFYQRNRWHKRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTH+A+ALRY AP+ VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I + + Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351 >gi|149377872|ref|ZP_01895601.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter algicola DG893] gi|149357814|gb|EDM46307.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter algicola DG893] Length = 378 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 178/354 (50%), Gaps = 2/354 (0%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E ND KTE + +++E A +G S+E + + +LA LL F + S+ Sbjct: 1 MAEENDNSQEKTEEATPRRLEKAREDGQTARSKELATMAVLLAGAGGLLMFGASMGASLE 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 S + + + D H+ L + A+ + P L+L ++ + + +++ Sbjct: 61 SIMRDSFV-LERSAIFDTRHMSVQLMASAKEAALSLAPLLILLLVAAVAGSIGIGGLLVS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P R+ +G+KR++S+ +L+ +K+ +K+ LV + + L +L Sbjct: 120 GKAIAPKLNRMDPLKGLKRMFSMRSLIELVKAILKVGLVMAVAILILNLRTDDLLSIAEE 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 S + H +T+ ++ + +D+ + KL+M+KQE+KDE K + G Sbjct: 180 PARSAMEHVVWTMAWSFFILACATIVIAAIDVPFQIFDHQKKLRMTKQEVKDEYKDTEGK 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K + + + R + +MM+ A ++ITNPTHYA+AL+Y Q AP++VAKG + Sbjct: 240 PEVKGKIRQLQREMAQRRMMQDVPGADVVITNPTHYAVALKYDQKNMAAPIVVAKGSDET 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+ +IA E+ + I P LAR+++ I IP Y A+AQ++ ++ + Sbjct: 300 AFKIMEIARENKVEILRTPPLARAVYHNTDIGGEIPDGLYMAIAQVLAYVFQLR 353 >gi|253996636|ref|YP_003048700.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8] gi|253983315|gb|ACT48173.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8] Length = 387 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTE S K++E A EG+ P SRE + + +LA + +L ++ + Sbjct: 1 MAE-ESDLEKTEDASPKRLEQAREEGDVPRSRELATVTVLLAAGLAMLMMGGQLADALKT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S + D ++ ++ + P L+ I S + V + Sbjct: 60 SMSSGL-SFQRAYAYDPMLLLMKISDNIYNLLLAFSPLALILFFVAIASPALIGGWVFSE 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ G ++S N+L +KS K ILVG + + ++ + ++L Sbjct: 119 KALIPKFGKLNPITGFSNMFSKNSLAELIKSIAKAILVGFVSYVVISHDMESILSLSLLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + I+ + + +D+ + +Q+ KLKM+K+E+K E K+S GNP Sbjct: 179 LDQSIAELNHLLLTSFLAIVSVLVLIAAIDVPFQLYQYADKLKMTKEEVKRESKESDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK+R + R R +MM A ++ITNPTHYA+A++Y + APV+VAKG + IA Sbjct: 239 EIKSRIRQQQREMARRRMMAEIPNADVVITNPTHYAVAIKYKEGGMLAPVVVAKGADAIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 K+R+ A EH + I E P LAR+++ + IP Y AVA+++ ++ +I Sbjct: 299 LKIREAAEEHKVLIVEAPKLARAIYTHTELTHEIPEALYTAVAEVLAYVFQMRI 352 >gi|302670739|ref|YP_003830699.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus B316] gi|302395212|gb|ADL34117.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus B316] Length = 383 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 98/357 (27%), Positives = 181/357 (50%), Gaps = 5/357 (1%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSV 58 +E+ K+E P+SKK++DA EG S+E + S+LA + L F F ++ Sbjct: 24 AEDANGAEKSEEPTSKKLDDARKEGQVAKSQEVATAFSLLAFFLILRFGYGFMGENFEAI 83 Query: 59 TSDLHVLLASATQR--KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 ++ + + +++I + L+ + P + + L+Q Sbjct: 84 FGSVYNTIPFVARMYDGFLPVNYIYSTINKALLTVLLICAPFFIFGFLIAFLCDLVQVGF 143 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++P +++ G+K+I+S + + +KS +K++++G +I + ++ Sbjct: 144 KPTSKPLQPKLSKLNPISGMKKIFSTRKIFDLLKSILKLVIMGVVIISYFSNRQESIFLL 203 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + + I I + D+ + +++ + M+KQE+KDE K + Sbjct: 204 YDIPLKQAIGLMGSFIIDLGIRIAAAYMIIAFADLIYQRRKFHKDMMMTKQEVKDEFKNT 263 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP +K+ QK R +MM+ +A ++ITNPTHYA+A+RY E DAP++VAKG Sbjct: 264 EGNPEVKSAQKRRMMQASRRRMMQELPKADVVITNPTHYAVAIRYDAEEADAPIVVAKGA 323 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA+K++++A E+N+ I E LAR L+ V I +PP YKAVA+++ +YH K Sbjct: 324 DYIAQKIKEVAKENNVEIVENKPLARMLYANVEIGEMVPPELYKAVAEVLAYVYHLK 380 >gi|24374727|ref|NP_718770.1| flagellar biosynthesis protein FlhB [Shewanella oneidensis MR-1] gi|24349387|gb|AAN56214.1|AE015759_6 flagellar biosynthetic protein FlhB [Shewanella oneidensis MR-1] Length = 376 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 165/340 (48%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ ++++ A +G S+E + +L+ L + PGI S++ + + + Sbjct: 13 PTGRRLDQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + + + ++ +LL ++ + + + P ++S Sbjct: 72 IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G KR++ + LV K K +V + L+ + +L + + +YHA + Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVALASYLLLSHYFNDILLLSADHLPGNVYHALDLLV 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A HNI Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ ++ +P + AVAQ++ ++ + Sbjct: 312 IVTAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQLR 351 >gi|240145485|ref|ZP_04744086.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82] gi|257202300|gb|EEV00585.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82] Length = 379 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 174/357 (48%), Gaps = 5/357 (1%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF---SPGIYSV 58 +++ KTE + KK+ +A +G S+E + ++ + L F G V Sbjct: 17 AKDGPGGEKTEPATEKKLREAREDGKVAKSKELTAAFDLIVLFLVLKVFISLIGNGFLEV 76 Query: 59 TSDLHVLLASATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 ++ L+ + S I L ++ + ++ P + + ++Q Sbjct: 77 FYYVYKLMPDFVSVNAMESSTKEITSFLHNVYIEMFKMAAPFFVFGVAVTALVSILQVGW 136 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 + +KP + + G KRI+S ++L +KS +KI L+ + S+ + Sbjct: 137 KVTAKPLKPKGDKFNPINGFKRIFSKDSLFELLKSILKIGLIIYVAYTSIKGEANDIFIL 196 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + + I L + + D + H++ +KM+KQE+KDE K + Sbjct: 197 YDIPLNQAVVLCGNVIINAGFKISLVYLVVGIADFVYQKHRFNEDMKMTKQELKDEYKNT 256 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 GNP IK RQ+ R + +MM+ +A ++ITNPTH A+A++Y + AP+++AKG+ Sbjct: 257 EGNPEIKGRQRQRMREASQRRMMQDVPKADVVITNPTHLAVAIKYDAEVSRAPIVIAKGE 316 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A+K+R+ A E++I I E LAR L+ V I + IPP Y+AVA+++ +Y+ + Sbjct: 317 DYLAQKIREKAKENHIEIVENKPLARMLYANVDIGAEIPPELYQAVAEILAMVYNLR 373 >gi|71281473|ref|YP_268257.1| flagellar biosynthesis protein FlhB [Colwellia psychrerythraea 34H] gi|71147213|gb|AAZ27686.1| flagellar biosynthetic protein FlhB [Colwellia psychrerythraea 34H] Length = 376 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 173/352 (49%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D+ KTE P++KK+ DA +G S++ F ++ +L S+ + Sbjct: 1 MADSDSG-EKTEEPTAKKLTDARKKGQIARSKDLGTFFVLVGSACAMLLMGKALANSMAN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S ++ + D++ + ++ ++ + M+ + + Sbjct: 60 MMSHMF-SLSREEAMDVNALFKVINDGVYQIIPPLLWIFFIVMLAAFIGNTLLGGMSFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P ++S G KR++ + V +KS +K +V + + L+ + +L Sbjct: 119 DAMMPKASKLSPMAGFKRMFGVQAAVELIKSVLKFFVVFIVAFLLLSGLFEEILGLSRET 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA ++ + +++ L I + V+D + +LKM+KQEIKDE K + G+P Sbjct: 179 IPANFEHAITMLQWMFLVLALSIGIIVVIDAPYQVWNHNRQLKMTKQEIKDEHKGTEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + +MM+ + ++ITNPTH+++AL+Y APVL AKG + +A Sbjct: 239 EIKGRIRRTQYEMSQRRMMQDVPESDVVITNPTHFSIALKYDAAAGGAPVLSAKGVDEMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +R IA EH I I + P+LARSL+ + IP + AVAQ++ I+ Sbjct: 299 LHIRTIAKEHQIEIIQSPALARSLYYTAEVGDDIPEELFAAVAQVLAFIFQL 350 >gi|229827381|ref|ZP_04453450.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC 49176] gi|229788319|gb|EEP24433.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC 49176] Length = 387 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 168/350 (48%), Gaps = 2/350 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK+EDA EG S + +L L F + Sbjct: 31 EGGDKTEKATPKKLEDARKEGRVARSSDLINGLMLLLMFFVLRIFGNFMAKGFLESFVKY 90 Query: 66 L--ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + ++ D+ V L + +P L+ + ++Q + + Sbjct: 91 YNKTADISMEIFDVKQAVNLGNEIVFDIVIACLPVLIGSFLVAFAGNVVQIGWKVTTKPL 150 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP R++ G+KR++S +V +KS +K++ + + + + + +L+ Sbjct: 151 KPKLDRLNPIGGLKRMFSQEKVVELIKSILKVLAIAIVAYNEVKDRWLFILNLYDFEFMQ 210 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + F V V + I + + + D G+ + L+MSKQE+KDE+KQS G+P +K Sbjct: 211 AIVNIFDIVLDVGVKISVLFVIIGIADFGYQKWKHLHDLRMSKQEVKDEMKQSEGDPQVK 270 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R R +MM+ +A ++ITNPTH+A+A++Y + + +AP ++AKG + +A + Sbjct: 271 GRIRQKMREGARRRMMQELPKADVVITNPTHFAVAIKYDKEKAEAPYVLAKGADYVAATI 330 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ A EH I I E LAR L+ V I IPP Y+ VA+++ +Y K Sbjct: 331 KEAAKEHKIEIVENKPLARMLYYNVEIGEQIPPELYQMVAEVLAYVYSVK 380 >gi|229591837|ref|YP_002873956.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens SBW25] gi|229363703|emb|CAY51084.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens SBW25] Length = 378 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + ++++A LL + + Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGGGLALDLME 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A + L + + L H A V P L+ ++ + + + Sbjct: 61 LMKHNFALP-REVLLNPDAMGQYLLHSGKIAILAVQPILITLLLAALIGPVALGGWLFAA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S LV +K+ K IL+ + + L+ + +L Sbjct: 120 GSMAPKFSRMNPGAGLKRMFSAKALVELLKALAKFILILFVALMVLSSDIDDLLRIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + H+ V + + + + +D + + KL M+KQE++DE K G P Sbjct: 180 LESAIIHSVQVVGWSALWMAAGLIIIAAVDAPIQLWESHKKLLMTKQEVRDEHKDQEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + KMM + A +IITNPTHYA+AL+Y + AP+L+AKG + A Sbjct: 240 EVKQRIRQLQREMSQRKMMASVPDADVIITNPTHYAVALKYDPEKGGAPMLLAKGSDFTA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+I + E P LARS+F ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAVAHDILLLESPELARSIFYSTDLDQEIPAGLYLAVAQVLAYVYQIR 352 >gi|254501745|ref|ZP_05113896.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] gi|222437816|gb|EEE44495.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11] Length = 359 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 192/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DA ++G+ P S+E S + ++ + + S+ + Sbjct: 1 MADETDDSEKTEDPTQKRLKDAHDKGDVPKSQEVSTWFTLAGATLMIAIMAPGAAASLGN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + A Q + D + L S + +V LL ++ + LIQ P+L Sbjct: 61 LLKGYIEHAHQIPV-DGYALKALWRDTGQSVALIVGLPLLALVVMAVFGNLIQHQPLLTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +VS G KR++S +LVNF K VKI++VG ++ L + I A+ Sbjct: 120 ETIKPKLSKVSPLSGFKRLFSSESLVNFAKGMVKILVVGAVMVAVLWPHRDEAEIMIFAD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 IL A + +VL IL + + D + ++W++K KMS +E+K+E KQ+ G+P Sbjct: 180 EMIILEEARILILQVLAAILAVMTVVAAADFVYQKNKWFNKQKMSLKEVKEEFKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R R +MM A AT+++TNPTHYA+AL+Y + AP+ VAKG + +A Sbjct: 240 HVKGKIRQLRMERSRKRMMSAVPAATVVVTNPTHYAVALQYEEG-MGAPLCVAKGTDALA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A EH +P+ E P LAR+L+ V I +P +KAVA++I ++ + Sbjct: 299 LRIRDVAKEHEVPVIENPPLARALYASVEIEQEVPEEHFKAVAEVIGFVFRMR 351 >gi|170741402|ref|YP_001770057.1| flagellar biosynthesis protein FlhB [Methylobacterium sp. 4-46] gi|168195676|gb|ACA17623.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46] Length = 354 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 115/350 (32%), Positives = 208/350 (59%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++KTE+P+ +++ +A+ +G+ P+SREAS+ +S++ LI L F ++ Sbjct: 1 MADETDQESKTESPTERRVREAIEKGDVPVSREASVLASVIGLLIALTLFVRGQAATLAR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+ LE+ LL ++++A R ++P L + + G+ + ++Q +P Sbjct: 61 EFVPLIDQPRGFTLENARDATLLLQSVAIAAGRFLLPVLAILAVCGLAASMLQNLPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G RI+ + V F+KS K + + + + L +L+ ++ + Sbjct: 121 DRIQPKWSRVSPASGWSRIFGRSGQVEFLKSLFKFLTITVVSLLLLRSERHKVLNAMTVD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +++ + + L D+ W+ +W L+MS+QE KDE KQ G+P Sbjct: 181 PSQVPELILSMAIRLVSAVSIATIVLVAADLIWARLRWQRSLRMSRQETKDEHKQIEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R +S+A+ R R +M+ A RAT++I NPTH+A+ALRY + EN AP++VAKGQ+LIA Sbjct: 241 LVKARLRSLAQDRTRKRMLAAVPRATVVIANPTHFAVALRYERDENPAPLVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 K+R+IA + IP+ E+ LARSL+ V ++ IP FY+AVAQ+++ ++ Sbjct: 301 LKIREIAEANGIPVIEDKPLARSLYDSVQVDQLIPAEFYRAVAQILFYVF 350 >gi|149188098|ref|ZP_01866393.1| flagellar biosynthesis protein B [Vibrio shilonii AK1] gi|148838086|gb|EDL55028.1| flagellar biosynthesis protein B [Vibrio shilonii AK1] Length = 376 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L+ F ++ Sbjct: 1 MAESD-GQERTEDATPQRLKQAREKGQVARSKELASVSVLIVGALSLMMFGEGLARALFG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ ++ D + + + S ++ L + + + + Sbjct: 60 SMARLF-NLSREEIYDSTKLFDVALGALSSLLLPLLLILFVLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K+ LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVTLVAGMAFYLVNASRADLFQLSMEV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P Sbjct: 179 FPQNIFHALDILLNFILLISATLLIVVAIDIPFQIWQHANQLKMTKQEVKDEFKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +IITNP H+++ALRY Q ++ APV+VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIITNPEHFSVALRYKQGQDKAPVVVAKGIDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I + P LARSL+ + IP + AVAQ++ +Y K Sbjct: 299 LKIREVAREHSIYVIPSPPLARSLYHTTELEQEIPDGLFAAVAQILAYVYQLK 351 >gi|240139290|ref|YP_002963765.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] gi|254561746|ref|YP_003068841.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] gi|240009262|gb|ACS40488.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] gi|254269024|emb|CAX24985.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] Length = 354 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ ++ VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L K++ +L A + + D + ++W+ +L+M+K+E+K E K+S G+P Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTH+A+ALRY AP+ VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A +H++P+ E P LAR+L V ++ IP Y+AVA++I + + Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351 >gi|118589950|ref|ZP_01547354.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] gi|118437447|gb|EAV44084.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614] Length = 357 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 132/353 (37%), Positives = 204/353 (57%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D D+KTE P+ KKI DA+ +GN P+SREA + ++ +A L+ F + + Sbjct: 1 MSEED-KDSKTEEPTEKKISDAIEKGNTPVSREAPVLATFIATLLIGSFVITSASRQLIQ 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL + L + + + L +S+ + P + L G+ S +Q P + Sbjct: 60 MLTHLLDLSGGVDLGNSADALLLTHAVSIEVLVFLAPIVALLAASGLASAFLQNTPSIVF 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP ++SL +G RI+ LV F+K+ K V I+ N +++ + + Sbjct: 120 HRIKPDASKLSLAKGWSRIFGAQGLVEFLKAVFKFSTVSAIVYGQFRANEAELINAMFTD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ K++ + + L +DI WS W L+MSKQEIKDE KQ G+P Sbjct: 180 PSALPEAILQISMKLIAGVCIVTILLVTVDILWSRSHWRKNLRMSKQEIKDEHKQMEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K RQ+S+AR R R++MM A +AT+I+ NPTH+A+ALRY +N APV+VAKGQ+LIA Sbjct: 240 IVKARQRSLARDRARNRMMSAVPQATLIVANPTHFAVALRYDGDQNPAPVVVAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +NIP+ E+ LARSL+ + IPP FY+AVA++I +Y ++ Sbjct: 300 LKIREIAEANNIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICYVYSRQ 352 >gi|27380920|ref|NP_772449.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA 110] gi|27354086|dbj|BAC51074.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 359 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 193/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ P+++TE P+ K++++AL G+ S+E + + I + + F + + Sbjct: 1 MAEDNDPESQTEDPTQKRLDEALERGDVAKSQEINTWFMIAGGTLVVSTFSGSVGSGLVT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + LLA++ K D ++ LL + + + LL+ ++ + ++Q V + Sbjct: 61 PMRNLLANSWMIK-TDGRALLALLQQIEFAVLAAIGVPLLMLVLAAVAGNMLQHRLVWSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F ++S G KRI+ NF+K K+I++G ++ L M + + Sbjct: 120 ESLKPKFSKLSPAAGFKRIFGKQAAANFLKGLGKLIVLGVVMGTILWPERHRMEAMVRLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++L +L ++ +A + + D + Y W+ + KMS QEIK+E KQS G+P Sbjct: 180 PAAMLGATTSLTIHLLGAVVAALAIIAIGDYFFQYRSWFQRQKMSLQEIKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + + R + +MM A +A++IITNPTH+++AL Y + AP+ VAKG + +A Sbjct: 240 HIKGKIRQLRQQRAKKRMMAAVPKASVIITNPTHFSVALSYERG-MQAPICVAKGVDNLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+IPI E LAR+L+ V I+ IP Y AVA++I + K Sbjct: 299 FKIREIAREHDIPIVENVPLARALYATVEIDQEIPTEHYHAVAEVIGYVMRLK 351 >gi|121533743|ref|ZP_01665570.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans Nor1] gi|121307734|gb|EAX48649.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans Nor1] Length = 376 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 175/346 (50%), Gaps = 2/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K+ E+A +G S E +LA + + + S + L + Sbjct: 29 QEKTEEATPKRREEARKKGQVAKSVELGSALCLLAAFFTIKLTGTYIYEQLASYMQFLFS 88 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 T+ + S F L L+L ++V+P +L+ + + +Q ++ +KP Sbjct: 89 RFTKEDMTIASSYRFFL-DLALIFLKIVLPIMLVILAVSLLVNFMQVGFTFSVEPLKPQL 147 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ G++R++S +LV +KS K+ ++ I + E + L Sbjct: 148 SRINPLAGMQRLFSKRSLVELVKSLFKVAIISYFIYQFIIEETLNIALLSRLALRDSLAV 207 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + I + I L +LD + + + LKM+KQE+K+E KQ+ GNP IK++ K Sbjct: 208 IAALTFDLAFRIGVVILVLAILDYYYQWWEHNQNLKMTKQEVKEEFKQTEGNPQIKSKIK 267 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R+ +MM+ +A +++TNPTH+A+AL Y AP+++AKGQ+ +A++++ +A Sbjct: 268 ERQRALAMRRMMQEVPKADVVVTNPTHFAIALLYE-KTMTAPMVIAKGQDFMAERIKLVA 326 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E+ + I E +LAR+L+ V I +PP YKAVA+++ +Y K Sbjct: 327 KENGVAIVENKALARALYDTVEIGETVPPELYKAVAEVLAYVYRLK 372 >gi|332994108|gb|AEF04163.1| flagellar biosynthesis protein [Alteromonas sp. SN2] Length = 376 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D+ KTE P+ KK+ED +G SRE S ++ LF SV Sbjct: 1 MADSDSS-EKTEDPTGKKLEDTRKKGQIARSRELSTTLVLVVSAFMFLFVGGWIAESVFK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D +H+ + S V+ + + M+ GI + Sbjct: 60 LTQRMFV-LSRDETYDTTHMFGAWGEAISTVSVPVLLYMTVAMLAGIYGSIALGGYNFTW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 K ++S G KR++ +N LV +KS K++++ + +L L Sbjct: 119 EGAKFKGSKMSPLSGFKRMFGMNGLVELIKSIAKVVVIVGMALGALLFFEDEALHLDLEL 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA ++ IM++ + + ++D+ + ++ ++KM+KQE+KDE K S G+P Sbjct: 179 YPGNIFHALDMLKWAFIMLVCGMIPIALIDVPYQIYKHNKEIKMTKQEVKDERKNSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R + + +MM+ +A +++TNPTHY++A++Y + N APV+VAKG + +A Sbjct: 239 LVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHYSVAIKYDDSGNRAPVVVAKGTDELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RKIA +++P+ P LAR+++ I+ +P + AVAQ++ +Y K Sbjct: 299 MHIRKIATANDVPLIPSPMLARAVYYSTEIDGEVPNALFMAVAQVLAHVYQLK 351 >gi|94500293|ref|ZP_01306826.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp. RED65] gi|94427592|gb|EAT12569.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp. RED65] Length = 375 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 181/352 (51%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE P+ ++++ A ++G P S+E S ++ ++ + + + ++S Sbjct: 1 MAENENSQEKTEEPTPRRLQKAKDDGQIPRSKELSTSLVLIVGVLSI-WLLADLLFSGAK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + ++ D ++ L + A + P ++L ++ + L + + Sbjct: 60 NIFQYNFVIEREQIFDEKQMLKHLGASAYEAILTMTPTMMLILLAAALAPLALGGWMFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+S G+KR++ + +LV +KS+ K+++V + +L Sbjct: 120 KALLPKANRISPLSGLKRMFGVKSLVELIKSWAKVLVVIGCTFLLFFIFNDKVLFLHREP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + V ++ ++V+D+ + +++ K++MS QE+KDE K++ G P Sbjct: 180 GTRAIADSADLVMLCAFILACSTLLVSVIDVPYQIYEYMQKMRMSLQEVKDEHKETEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MM+ A ++ITNPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKQRIRRLQYEMSQRRMMDDVKDADVVITNPTHYAVALKYDSDQMGAPLMVAKGTDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA ++ I + E P LARS++ I IP Y AVAQ++ +Y Sbjct: 300 LKIREIAKQNKIAVVEAPPLARSIYAFTKIGKEIPEGLYVAVAQVLAYVYQL 351 >gi|284007183|emb|CBA72471.1| flagellar biosynthesis protein FlhB [Arsenophonus nasoniae] Length = 383 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 170/353 (48%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ K E P+++K E A EG SRE S F ++A + L + Y Sbjct: 1 MAE-ESDLEKNEEPTARKKEKAKEEGQVVRSRELSSFFMLIAG-VSLFWICGHSCYQKLH 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + L + + L+ ++P + ++ + +N Sbjct: 59 ALFSQTFYFDKYILYNSQLLPNLVFESVKIGLNALLPIIAGLVLIAFAAPSFFGGIHINF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +K+++ G+KR++SIN L K+ +K++LV IT+ L N ++ Sbjct: 119 KSIKFDWKKLNPITGLKRLFSINALAELFKALLKVMLVSIGITLFLWVNLPHFFHLVTEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L A + + + + L D+ + KL+M++QEIKDE KQ G+P Sbjct: 179 RHLALSQATQLMIFAAYIAIFMLIPLVGFDLIYQLRSHLKKLRMTRQEIKDEFKQQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R R +MM +A +IITNPTHYA+AL+Y AP ++ KG LIA Sbjct: 239 HIKARIRQQQREISRRRMMADVPKADVIITNPTHYAVALQYDNQAMQAPKVLVKGAGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++ E+ IP+ E P LAR+L++ + IP Y AVA+++ +Y + Sbjct: 299 LNIKQLGEENRIPVLEAPPLARALYRHSKVGGHIPATLYAAVAEVLAWVYQLR 351 >gi|120598263|ref|YP_962837.1| flagellar biosynthesis protein FlhB [Shewanella sp. W3-18-1] gi|120558356|gb|ABM24283.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1] gi|319427058|gb|ADV55132.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens 200] Length = 376 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 167/340 (49%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +L+ + PGI + S + + + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGTAAVLLSAATGF-YMLGPGIATALSHVFERVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + + ++ + ++ +LL ++ + + + P ++S Sbjct: 72 IYDTNQMFNVWGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPL 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G KR++ + LV K K +V L+ + +L S + ++HA + Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLPGNVHHALDLLI 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R Sbjct: 192 WMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A E+NI Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ ++ IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLR 351 >gi|146293659|ref|YP_001184083.1| flagellar biosynthesis protein FlhB [Shewanella putrefaciens CN-32] gi|145565349|gb|ABP76284.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32] Length = 376 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 167/340 (49%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +L+ + PGI + S + + + + + Sbjct: 13 PTGRRLEQAREKGQVARSKELGTAAVLLSAATGF-YMLGPGIATALSHVFERVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + + ++ + ++ +LL ++ + + + P ++S Sbjct: 72 IYDTNQMFNVWGVVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPL 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G KR++ + LV K K +V L+ + +L S + ++HA + Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLPGNVHHALDLLI 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ + + V+D+ + +LKM+KQE+KDE K + G P +K R + + R Sbjct: 192 WMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP HYA+A++Y + AP ++AKG + +A K+R++A E+NI Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ ++ IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLR 351 >gi|293604994|ref|ZP_06687390.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC 43553] gi|292816599|gb|EFF75684.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC 43553] Length = 384 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 184/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ K+EA S +++E A EG SRE F + A + + ++ Sbjct: 1 MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVGVIWAGGGSLYRGLSG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH LA QR + D +V A ++P + + + S ++ V++ Sbjct: 60 VLHNGLA-FDQRIVTDPGVMVEQAVIGFGHALLALLPVFGVLAVVAVLSSVLLGGIVISG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ +F ++SL G+KR++S +V +K+ K +LVG + + + ML + Sbjct: 119 KPLQANFSKLSLFAGLKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLGLMHVA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L A V +I+ + + +LD+ W KL+MSK++++ E K+S G+P Sbjct: 179 PSAALIKALSLVAICCALIVASLLVIVLLDVPWQIFSHLKKLRMSKEDVRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R R +MM RA +++TNPTHYA+AL+Y + ++ AP ++AKG LIA Sbjct: 239 HVKARIRQQQRQAARRRMMSEVPRADVVVTNPTHYAVALKYDEDKSGAPRVIAKGTGLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A E+ IP E P LAR+L + V + IP Y AVA+++ ++ + Sbjct: 299 AKIRELAAENRIPTLEAPPLARALHQHVELGKEIPAELYTAVAEVLAWVFQLR 351 >gi|261855327|ref|YP_003262610.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus c2] gi|261835796|gb|ACX95563.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus c2] Length = 379 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE PS K++ +A +G SRE + I L + + Sbjct: 1 MAENENGQEKTEEPSEKRLREAREKGQVARSRELGSLALTAGSAIVFLVMGGHMLSRL-E 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + ++ ++ D + + L ++P L ++ + S L+ + Sbjct: 60 QMFRHAFTLSRAEIMDPATMFHRLALSFSEGFLALLPFFLAAVVLAVSSTLLVGGWNFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G KR++S+ +LV +K+ K L+ I + Sbjct: 120 QALAPQFNRLNPLSGFKRMFSMKSLVELLKTLAKFFLIAAIAIGLFEAMEKDFVGLGLMG 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A + + + L + + ++D+ + +++ L+M++QE+ DE K+ G P Sbjct: 180 LEAGLARAGTLLSWSFLGLSLGLLVVAMIDVPFQMYEYKKGLRMTRQEMIDEYKEVEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MMEA A +IITNPTH+++AL+Y + AP++VAKG + +A Sbjct: 240 EVKQKIRQLQRQMAQRRMMEAVPTADVIITNPTHFSVALKYQPNSDAAPMVVAKGADEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RKIA +++P+FE P LARSLF V + AIP Y AVAQ++ ++ K Sbjct: 300 MTIRKIANANHVPLFESPQLARSLFAHVEVGDAIPSGLYVAVAQVLAYVFQMK 352 >gi|83309718|ref|YP_419982.1| flagellar biosynthesis protein FlhB [Magnetospirillum magneticum AMB-1] gi|82944559|dbj|BAE49423.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1] Length = 355 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 202/353 (57%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ D+KTE P+ +K+ A +GN P S+E +++S++ L+ + F + Sbjct: 1 MAED--SDDKTEEPTDRKLSQAREQGNIPTSQEVKIWASLVGALVVVTLFAPYMARDIGR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + + LL+ +++ +L+I +++ ++ I S + Q + Sbjct: 59 LLLPFVEHPHAFPM-GREDVGQLLSGITVDMIKLLIMPMMMLVVLAIASAMGQSGLMFLP 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + F ++S +G++RI+S NLV F+KS K+ +G +I + L + + + Sbjct: 118 DKLTLDFGKLSPGKGLQRIFSGRNLVEFVKSLFKVSAIGFVIFLILKSHMSEYAGLAALD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L + V ++I+++L + L D + + ++KM+KQEIKDE KQ+ G+P Sbjct: 178 LMAVLDYLRHQVITMIIVVVLMVFVLAAADWFYQRWAFTQQMKMTKQEIKDEHKQTEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +++ R R +MM A RA++++TNPTHYA+AL+Y Q APVLVAKG +LIA Sbjct: 238 MIKGRLRALRMQRARQRMMAAVPRASVVVTNPTHYAVALQYDQDSMGAPVLVAKGVDLIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++R +A E+ +PI E P LAR+L+ V ++ IPP YK VA++I + K Sbjct: 298 KRIRDLATENEVPIVENPPLARALYATVELDQEIPPEHYKTVAEIIGYVMKLK 350 >gi|188581880|ref|YP_001925325.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001] gi|179345378|gb|ACB80790.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001] Length = 355 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 193/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++KTE P+ ++IE A+ G+ P S E + F + A + L+ P +T Sbjct: 1 MADESDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSAKPMAEGLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L A + +++ L + A L +P L + M+ I + LIQ P+ Sbjct: 61 DMRGFLEHAGSIPSDAGTYLGVALRAGWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+S G KR+ + VNF K KII+VGTI L + F + Sbjct: 120 ESLMPKFARISPMAGAKRLLGTDAWVNFGKGLAKIIVVGTIAGAILWNEHDRAESFAQLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + L K++ +L A + + D + H+W+++L+M+K+E+K E K+S G+P Sbjct: 180 PGAALQGTLTLALKMMGGMLAAYAAIALGDALYQRHRWHTRLRMTKEEMKQEHKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + ++R++ +MM A AT+++TNPTHYA+ALRY APV VAKG + +A Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHYAVALRYETG-MAAPVCVAKGVDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A +H++P+ E P LAR+L V +++ IP Y+AVA++I + + Sbjct: 299 LRIRAVAADHDVPVLENPPLARALHATVEVDAEIPAEHYRAVAEVIGFVLRLR 351 >gi|328543170|ref|YP_004303279.1| flagellar biosynthesis protein B [polymorphum gilvum SL003B-26A1] gi|326412916|gb|ADZ69979.1| Flagellar biosynthesis protein B [Polymorphum gilvum SL003B-26A1] Length = 359 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ K++++A +G+ P S+E S + ++ + + F + + Sbjct: 1 MADDTDDSEKTEDPTQKRLKEAHEKGDLPKSQEVSTWFTLAGAAMMIALFAPAVTTELGT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L A + D + L S + +V LL + + L+Q V Sbjct: 61 QLKWYLEHAHEIP-ADGYALKALWRDTGQSVALIVGLPLLALVAMAVAGNLVQHEAVFTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +VS G KR++S +L+NF K +KI++VG ++ L I + Sbjct: 120 EPIKPKLSKVSPLSGFKRLFSGQSLMNFAKGMLKIVIVGAVMVAVLWPQRDRAEAVIFVD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S+L A V ++L +L + + D W H+W+ K KMS +E+K+E KQ+ G+P Sbjct: 180 VSSLLEEARGLVLQLLAAVLAIMTVVAGADYVWQRHKWFEKQKMSMRELKEEYKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K + + + R R +MM A +AT+++TNPTHYA+ALRY + AP+ VAKG + IA Sbjct: 240 LVKGKIRQLRMERSRKRMMAAVPQATVVVTNPTHYAVALRYEEG-MGAPLCVAKGTDAIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A +H +P+ E P LAR+L+ V ++ IP YKAVA++I ++ + Sbjct: 299 LKIREVARQHEVPVVENPPLARALYASVDVDREIPEDHYKAVAEVIGFVFRMR 351 >gi|254420201|ref|ZP_05033925.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3] gi|196186378|gb|EDX81354.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3] Length = 358 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 100/355 (28%), Positives = 188/355 (52%), Gaps = 2/355 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ P++KTE + +K+EDA +G+ S++ S+ +L S+ Sbjct: 1 MADDTDPESKTEDATPRKLEDARKKGDVAKSQDVGQVLSLAGAAAVILGAGGWFAGSMAQ 60 Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L +A+ Q + D +L + + + +L ++ G G +L Q + Sbjct: 61 QLLPFIAAPHQMLGMLDSGAGAQILAQALWAMTPFLGAVMLATIIGGAGGHLAQSGLIFT 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP + V+ G KRI+ + L+ F+K+F+K+I V + + L + + ++ Sbjct: 121 AEKLKPKWSSVNPMSGFKRIFGPDGLMQFVKTFLKLIAVCVVCWMVLKPHVREFENMVTL 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P ++L A + + ++ + D W ++ +++M+K+E+K++ KQS G+ Sbjct: 181 SPAALLPLARDMALALFVAAIILLGATAGADFIWQKMRFAKRMRMTKEELKEDYKQSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNL 298 P IK + K I R R +MM +AT+I+TNPTHY++ALRY + APV VAKG + Sbjct: 241 PHIKAKLKQIRMQRSRQRMMANVPKATVIVTNPTHYSVALRYEPSEGDGAPVCVAKGVDA 300 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R++A EH +PI E LAR+L+ V I++ IP ++A A++I ++ + Sbjct: 301 LAMRIREVAKEHGVPIVENVPLARALYASVEIDAVIPKEHFEAAAKIIGFVFQSR 355 >gi|253573537|ref|ZP_04850880.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon 786 str. D14] gi|251847065|gb|EES75070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon 786 str. D14] Length = 363 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 178/346 (51%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK ++A +G S+E + ++A + L F + + Sbjct: 14 GEKTEKATPKKRQEARKKGQVAKSQELTGALLLMAGFLCLTAFAGYFKDRLIGLFVDVFY 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++ ++++ ++ ++ L+ P L+ ++ + + Q +L +K F Sbjct: 74 HRLSMEVTK-TNVMAMMGEYAVQVLLLLAPIFLVVIVVAVVANYAQIGFMLVGEPLKIKF 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ +G K I+S+ +LV F+K+ K++++G ++ ++ ++ + + Sbjct: 133 SKLDPIKGFKNIFSMRSLVQFVKTLFKLLIIGYLVYSTIWGYRGSLSALGHVSVDDTFHF 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + I + L VLD + ++ LKMSKQ+IKDE K+ G+P+IK + + Sbjct: 193 TAQLTMNLGLKIAAALIVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKIR 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTH+A+AL+Y ++ DAP ++AKGQ+ +A ++++IA Sbjct: 253 ERQRRMALQRMMQEVPKADVIITNPTHFAVALKYDGSKMDAPQVIAKGQDYVALRIKEIA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH + E LAR+LF++ I IP ++AVA+++ +Y K Sbjct: 313 KEHGVITMENKPLARALFQRTEIGDTIPADLFQAVAEVLAYVYRIK 358 >gi|27885003|gb|AAD56298.2| FlhB [Pseudomonas putida] Length = 380 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 104/354 (29%), Positives = 179/354 (50%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + L LL F ++ Sbjct: 1 MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVVLTLGGAGALLTFGGHLAETLL- 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + S T+ + D + L A V P L L + + + + + Sbjct: 60 TLMRMNFSLTRDVIVDERAMGAFLLASGKMAIWAVQPVLGLLFVLALIGPVALGGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R+S GIKR++S+N++ +K+ K ++ + + L+ + +L + Sbjct: 120 SLLQPKFSRMSPLSGIKRMFSLNSVTELLKAVAKFFVILVVALVVLSHDRQALLAIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA V + + + + +D+ + Q KLKM+KQE++DE K S G P Sbjct: 180 LEQAIIHAVQVVGWSALWMAAGLLLIAAVDVPFQLWQTQQKLKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + I Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ + Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353 >gi|296330853|ref|ZP_06873328.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674371|ref|YP_003866043.1| flagellar export machinery protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151858|gb|EFG92732.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412615|gb|ADM37734.1| component of the flagellar export machinery [Bacillus subtilis subsp. spizizenii str. W23] Length = 360 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D +G S + + S+L + L+ + S L Sbjct: 12 GEKTEKATPKKRKDTRKKGQVAKSADVNTAVSLLVIFLSLIAIGPFMRDRLLSFLETFYT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + KL + +++ L L + ++ P +L+ ++ G+ S +Q + + ++P Sbjct: 72 ESLTMKLSE-ANVHTLFISLLKDTAFVLAPIMLVALVAGVVSNYMQVGFLFSAEVIQPKL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRIYS+ +V +KS +KI +VG L +Y +L P L Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKITVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + +KMSKQ+IKDE K+S G+PIIK++ K Sbjct: 191 VSKLTLWMGLSGAGALLLLAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ + E LAR+L+ QV I+ A+P F+K +A+++ +Y K Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356 >gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium ljungdahlii DSM 13528] gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium ljungdahlii DSM 13528] Length = 606 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 186/348 (53%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK D+ +G S+E L ++LA + + S+ S + Sbjct: 261 AKDDKTEEATPKKKSDSRKKGQIARSKEIGLTMTLLASTLVIAVLGGYVGTSLGSTMVAF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L L + S + ++ + + +P + + G+ + ++Q ++ +KP Sbjct: 321 LNDYINTSL-NYSSVNKIMFITIWRIAIVFLPIAVPILAIGVLANMVQTRGLITFETLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F +++ G KR++S +++ +K + +VG + + +NY +L+ + ++ Sbjct: 380 DFSKLNPISGFKRMFSARSVMELLKDTAIVSIVGYVGYKFIKDNYMYILNLGQLDSRAVA 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I L + + +LD + +Q+ L+MSKQEIK+E KQ G+P IK + Sbjct: 440 KAIGSLAVGIFFRITLIMLIIAILDYMFQRYQYNKDLRMSKQEIKEEFKQDEGDPQIKGK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ R +MM+ +AT+++TNPTH A+AL+Y + +N APVLVAKG + +A K+++ Sbjct: 500 RRQKQRELAMRRMMQEVPKATVVVTNPTHVAVALKYEEGQN-APVLVAKGLDAVALKIKE 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++++PI E LAR ++K+V I+ IP Y+AVA+++ +Y + Sbjct: 559 IAKDNDVPIIENRPLARLIYKEVEIDMEIPAEMYQAVAEILALVYKMR 606 >gi|317133470|ref|YP_004092784.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense YUAN-3] gi|315471449|gb|ADU28053.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense YUAN-3] Length = 356 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M E A D KTE + K+ ED +G+ S + + ++L L I S++ Sbjct: 1 MPEASAGD-KTEKATPKRREDERKKGHVVQSPDVTSAVAMLGTFAVLRVMGPSMIKSLSD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +LA+ T + + +T + +P +L+ + + L Q +++L Sbjct: 60 GMRGMLANLTS-AVSGYEDMRARMTAALSVLIGVAVPVMLVAFAATVATTLAQTRLLVSL 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP R++ EGIKR++S+ +LV KS +K++LVG ++ + T+L + + Sbjct: 119 DQLKPDLSRLNPLEGIKRLFSVRSLVELGKSILKVVLVGAVVYFEIQPQMHTILLLYNMS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + I + + L +D + + Q+ ++M+K+EIK+E KQ GNP Sbjct: 179 LAQSFSWVAGILADIGIKVAGVMLLLGAIDYFYQWFQYEKDIRMTKEEIKEEYKQMEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + K++ R R +MM+ +A +++ NPTH+A+AL+Y + APV VAKG+N +A Sbjct: 239 EIKGKIKNLQRQMARRRMMQDVPKADVVLRNPTHFAVALKYEHGKQRAPVCVAKGRNAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ +IA E+++ I E+P L R+L++ V + IP FYKAVA+++ IY + Sbjct: 299 LRIVEIAEENHVYIREDPPLTRALYQAVEVGGQIPAEFYKAVAEVLAYIYKLR 351 >gi|323496542|ref|ZP_08101596.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326] gi|323318386|gb|EGA71343.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326] Length = 376 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F ++ + Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVSLMWFGESLARALFT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ ++ D + L S +I L+ + + ++ Sbjct: 60 VMERLF-TLSREEIFDQVKLFDLALGSLTSLILPLILILVTLFIAAVAGAAGVGGISFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P + +++ G+KR+ + + V +KS +K+ LV + + + Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++H+ + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P Sbjct: 179 FPQNIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351 >gi|15642119|ref|NP_231751.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674451|ref|YP_001217641.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O395] gi|153818990|ref|ZP_01971657.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457] gi|153822901|ref|ZP_01975568.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33] gi|227082245|ref|YP_002810796.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2] gi|229507795|ref|ZP_04397300.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286] gi|229511968|ref|ZP_04401447.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33] gi|229519104|ref|ZP_04408547.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9] gi|229607340|ref|YP_002877988.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236] gi|254849205|ref|ZP_05238555.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10] gi|298497858|ref|ZP_07007665.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757] gi|9656670|gb|AAF95265.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510485|gb|EAZ73079.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457] gi|126519597|gb|EAZ76820.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33] gi|146316334|gb|ABQ20873.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395] gi|227010133|gb|ACP06345.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2] gi|227014016|gb|ACP10226.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395] gi|229343793|gb|EEO08768.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9] gi|229351933|gb|EEO16874.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33] gi|229355300|gb|EEO20221.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286] gi|229369995|gb|ACQ60418.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236] gi|254844910|gb|EET23324.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10] gi|297542191|gb|EFH78241.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757] Length = 376 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|238924151|ref|YP_002937667.1| flagellar biosynthesis/type III secretory pathway protein [Eubacterium rectale ATCC 33656] gi|238875826|gb|ACR75533.1| flagellar biosynthesis/type III secretory pathway protein [Eubacterium rectale ATCC 33656] gi|291524884|emb|CBK90471.1| flagellar biosynthetic protein FlhB [Eubacterium rectale DSM 17629] Length = 382 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 183/355 (51%), Gaps = 5/355 (1%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL---LFFFSPGIYSV 58 +++ KTE + KK++DA EG S+E + ++ + L + F + + Sbjct: 25 AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84 Query: 59 TSDLHVLLASATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 S ++ + + E IS + L ++ L V+P ++ I +IQ Sbjct: 85 FSTVYKKMPDFLKESQEQISSVSVTHYLNNVILQFLLTVLPFFAFGVVITILVSIIQVGF 144 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++ + P + + G KRI S +++ +KS +K+ ++ + S+ + + Sbjct: 145 KISTKPMAPKLSKFNPINGFKRILSKDSIFELLKSVLKVGIIMYVAYSSVKSHQNDIFIL 204 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + + + I + + + D ++ H++ + +KM+KQE+KDE K + Sbjct: 205 YELPLKQAIVLIGDIIINTGLKISIVYMIVGIADFAYNKHKFNNDMKMTKQEVKDEFKNT 264 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK +Q+ + + +MM+ +A ++ITNPTH+A+A++Y +NDAPV+VAKGQ Sbjct: 265 EGDPAIKGQQRKRMQEASQRRMMQDVPKADVVITNPTHFAVAVKYDAQKNDAPVVVAKGQ 324 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A+K+++IA ++NI I E LAR LF V + + IPP Y++VA+++ IY Sbjct: 325 DYVAQKIKEIARDNNIHIVENKPLARMLFHNVDLGAEIPPELYRSVAEILAMIYK 379 >gi|261252335|ref|ZP_05944908.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891] gi|260935726|gb|EEX91715.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891] Length = 376 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ I L++F ++ + Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGSIALMWFGESLARALFT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D + ++ S ++ L+ + + ++ Sbjct: 60 VMSRLF-SLSREEIFDHVKLFDIVVGSIGSLILPLLLILVTLFVAAVVGAAGVGGVSFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ + + V +KS +K+ LV + ++ + Sbjct: 119 EAAMPKASKMNPLSGLKRMVGMQSWVELIKSILKVALVSGMAFYLISAAREDLFQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K++ G P Sbjct: 179 YPQNIFHALDILLNFVLLISCTLLIVAAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDTDKAPIVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH+I + P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREVAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351 >gi|327399034|ref|YP_004339903.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411] gi|327181663|gb|AEA33844.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411] Length = 353 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 187/347 (53%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 ++KTE + K+ ++A EG S E + +LA +++ F S + L Sbjct: 3 DEDKTEQATPKRRQEAREEGRVAKSVELNTAFLMLAAVVFFYFTASNFGEKIKDVLIYFF 62 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ ++ + L+ +S +++P ++ ++Q + ++ Sbjct: 63 TLASNFEI-TLDSFDILVKRISGFMFSILLPFFIVMATIAFLINVVQVGFYITPKAMEIK 121 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F +++ G K ++S+ + +KS +K ++G I+ I + +N + N ++ Sbjct: 122 FDKINPVNGFKNMFSLRSFGELVKSLLKASVMGYILWIFIQKNINSWSSLSKTNQTAVFL 181 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ V++ IL+FI + +LD + + + + M+KQE+KDE KQ G+P IK + Sbjct: 182 VMIKSMFLVVVYILIFIIFMAILDYLFQKYTFEKSIMMTKQEVKDEYKQMEGDPKIKQKI 241 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 +S+ R +MME +A ++ITNPTHYA+AL+Y AP +VAKG NLIAKK+++I Sbjct: 242 RSMQMEMTRKRMMEEVKKADVVITNPTHYAVALKYDSATMAAPKVVAKGINLIAKKIKEI 301 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E+++PI E+P LARSL+++V ++ IP Y+AVA+++ ++ K Sbjct: 302 AKENDVPIVEKPELARSLYEKVKLDREIPEELYQAVAEILAYVFKLK 348 >gi|310764894|gb|ADP09844.1| Flagellar biosynthetic protein FlhB [Erwinia sp. Ejp617] Length = 381 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS ++ + KTEAP+ +I A EG P S+E + +L +L + S+ S Sbjct: 1 MS-QESDNEKTEAPTPSRIAKAREEGQIPRSKELTTLLMLLVGWGLMLCSGGNLVRSLQS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L + + D + ++ + L A ++P + ++ + + + +L+ Sbjct: 60 LLHNALI-FDRLLVLDPAQMLQRSSSLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K+++ GIKR++S +K+ +K++L + L N + I Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATIGGGLYLLLNKEKFIRLIFEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ G+P Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG L+A Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y + Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351 >gi|304311113|ref|YP_003810711.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1] gi|301796846|emb|CBL45058.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1] Length = 375 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 186/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D KTE + +K+E A +G P SR+ S ++ I +L + IY Sbjct: 1 MADED-GQEKTEDATPRKLEQAYEKGQTPRSRDLVAVSMLIIGGIGMLLYVEQ-IYRAFV 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + K+ D S ++ L + +A + ++P + I + + ++ Sbjct: 59 TAFEMGFTFDREKIFDDSAMMRALLQAAYAAGKSLLPLFATLAVVAIAASVASGGLHVSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + F++++ GIKR++S+ +LV +KS +K+ LVG + + + L I Sbjct: 119 HPLMFKFEKLNPLSGIKRMFSLQSLVELIKSIMKVSLVGFTAWLVVKAQFAEYLGLIDEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + L +A + +D+ + Q+ +L+M+KQE+KDE K S G P Sbjct: 179 IQQAMLHSISMVAWAFVWLSLSLALVAAIDVPYQNWQFRKQLRMTKQEVKDEYKDSEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK +Q+ AR MM +A ++ITNPTH+A+ALRY T+ AP LVAKG +LIA Sbjct: 239 EIKAKQRQRAREMAFAGMMAEVPKADVVITNPTHFAVALRYDPTKGGAPKLVAKGADLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++++A +N+ I P LARS+F + IP Y AVAQ++ +YH K Sbjct: 299 EQIKRVAIANNVVILAAPPLARSIFYHTKLFKEIPSGLYVAVAQVLAYVYHLK 351 >gi|254470232|ref|ZP_05083636.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] gi|211960543|gb|EEA95739.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] Length = 358 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 187/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ KTE P+ K+++DA +G+ P S+E S + S++ + + F + SV++ Sbjct: 1 MAEDTDDSEKTEDPTQKRLDDAFEKGDIPKSQEVSSWFSLVGTALVISFLAPTMVSSVST 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A A + D +VFLL +V LL M + ++Q P+ Sbjct: 61 ILKGFFAHADTIAV-DPGALVFLLEITGPEILGVVALPLLTLMALAVVGNVVQHKPLWTA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++S G+KR++S ++L NF+K VKII V + + L + + Sbjct: 120 ERLKPKLNKISPLSGMKRLFSKDSLANFLKGLVKIIAVAAAVFLVLWPERDRLDTVVFRE 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L V+ IL + + D+ W +W+ K KM++QE+K+E KQS G+P Sbjct: 180 TGLVLEEVRELAIMVIGAILALMTVVAGADLVWQRKKWFEKQKMTQQEVKEEYKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R R++MM + AT++ITNPTHYA+AL Y + AP VA G + +A Sbjct: 240 KIKAKIRELRLQRSRNRMMASVPDATVVITNPTHYAVALSYEEG-MGAPQCVALGVDDLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E ++PI E P LAR+L+ + +N +P Y AVA++I + + Sbjct: 299 LRIREVAKESDVPIVENPPLARALYASIELNDYVPEEHYAAVAKVIGYVMQLR 351 >gi|330828812|ref|YP_004391764.1| flagellar biosynthetic protein FlhB [Aeromonas veronii B565] gi|328803948|gb|AEB49147.1| Flagellar biosynthetic protein FlhB [Aeromonas veronii B565] Length = 376 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +TE P+ K+++ A +G S+E S +L+ + LL ++ Sbjct: 1 MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASVLLSAVFGLLMLKGSLATAMIK 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + + D + ++ ++ L + L + + + Sbjct: 59 VVTMGF-TLDREQAFDPNAMIAMVPALLGELVLPLGLLFALVAIAAFIGNTLMGGMNFST 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++S G+KR++ + +L+ +KS K++ + L+ + +L+ Sbjct: 118 EAMMPKMSKLSPLSGLKRMFGVQSLIELVKSIAKVVFITLFAWWMLSSQFNHLLNLSMEG 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A +LI++ + + +D+ + +LKM+KQE+KDE K S G P Sbjct: 178 FPGGIIDALELFLWMLIILCCALLPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLI 299 +K + + + +MM +A ++ITNPTHY++AL+Y + AP +VAKG + I Sbjct: 238 EVKGKIRQLQMQMAMRRMMGDVPKADVVITNPTHYSVALKYDAGKPGAAPKVVAKGTDEI 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+IA E+ IPI P+L R+++ + IP + AVAQ++ ++ K Sbjct: 298 AMKIREIAREYEIPIMPSPALTRAIYHSTELGHEIPEGLFAAVAQVLAYVFQLK 351 >gi|260886652|ref|ZP_05897915.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] gi|330839517|ref|YP_004414097.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] gi|260863795|gb|EEX78295.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] gi|329747281|gb|AEC00638.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC 35185] Length = 366 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 175/346 (50%), Gaps = 3/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++K+ DA +G S+E S +LA + S + + + + A Sbjct: 19 GEKTEEPTAKRRNDARQKGQVARSQELSGAFVLLAGFFVMRALGSTILTEIETYTVHIYA 78 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + Q D ++ L+ + ++ P ++ ++ G+ Q + + Sbjct: 79 NMNQ--TVDAETVMRLIIDGMIVLAKTAFPVMIAILVMGLAINFYQVGFMFTTEPLSFKL 136 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ G RI+S ++V +KS +KI ++G + + L+ M +FI + S + Sbjct: 137 DKLNPITGFGRIFSKRSIVELLKSLLKIAIIGAFLYVYLSGEIMHMPEFIYLDLKSSMAR 196 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + ++ I++ + D + Q LKMSKQ+IK+E KQ+ G+P IK + + Sbjct: 197 MGDIIFSLVFQIIIVYFVMAAADFAYQKWQTTQDLKMSKQDIKEEFKQTEGDPQIKGKIR 256 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + ++MM+ A +I+TNPTHYA+AL+Y AP +VAKGQ+L+A+K++ IA Sbjct: 257 QKQQQMAMNRMMKEVPEADVIVTNPTHYAVALKYKAG-MKAPEVVAKGQDLVAQKIKDIA 315 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH + I E LAR+L+ V + +PP Y+AVA+++ +Y K Sbjct: 316 REHRVTIVENKPLARALYAAVDVGGIVPPELYQAVAEVLAYVYRLK 361 >gi|152980271|ref|YP_001353777.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp. Marseille] gi|151280348|gb|ABR88758.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp. Marseille] Length = 402 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 166/350 (47%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ KTE S +K+E A +G+ P SRE + + +L + + L Sbjct: 15 EESDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGAGAAFWILGGRMVGELNKMLA 74 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L S + D+ ++ + P L+ ++ + S + + + + Sbjct: 75 AGL-SFDREMAFDMELLLAHAAASIIDLLIAFAPAALILIVVALISPALIGGWLFSGKAL 133 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P+F R++ +G+ + S V K+ K IL+G I + + + ++ S Sbjct: 134 QPNFGRMNPIKGLGNMVSSRAAVELGKAIAKTILIGWIAWMVMRHEFDAVMALSVEPLKS 193 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 H + I I + + +D + Q KL MS+Q+++ E K+S GNP IK Sbjct: 194 GTEHLGHLLVFSFIFIAAGLVIVAAIDAPYQMWQHAKKLMMSRQDVRQESKESEGNPEIK 253 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 + + R R +MM A +++TNPTHYA+AL+Y + AP +VAKG + +A K+ Sbjct: 254 AKIRQQQREMARRRMMAEVPTADVVVTNPTHYAVALKYSENGMRAPRVVAKGADEVAAKI 313 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A E+N+ + E P LAR+LF+ + IP Y AVA+++ ++ + Sbjct: 314 RELAMENNVVLLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLR 363 >gi|121727196|ref|ZP_01680363.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52] gi|153828614|ref|ZP_01981281.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39] gi|262191369|ref|ZP_06049559.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93] gi|121630441|gb|EAX62834.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52] gi|148875885|gb|EDL74020.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39] gi|262032744|gb|EEY51292.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93] Length = 376 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|239997097|ref|ZP_04717621.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126] Length = 374 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ KK+EDA +G SRE S ++ LF SV Sbjct: 1 MADSS---EKTEDPTGKKLEDARKKGQLARSRELSTTLVLIVSAFMFLFVGGWIAESVFK 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + DI+H+ + V+ +++ M+ GI + Sbjct: 58 LTQRMFI-LSRDETYDITHMFGAWGEAFSAVGPTVLLYMVVAMIAGIYGSIALGGFNFTW 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP ++S +G KR++ +N LV +KS K++++ + +L L Sbjct: 117 EGAKPKGSKMSPIQGFKRMFGMNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMEL 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA ++ ++++ + + ++D+ + ++ ++KM+KQE+KDE K + G+P Sbjct: 177 YPGNIFHALDMLKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R + + +MM+ +A +++TNPTH+++A++Y + APV+VAKG + +A Sbjct: 237 MVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGVRAPVVVAKGADELA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RKIA +++P+ P LAR++F ++ IP + AVAQ++ +Y K Sbjct: 297 MHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349 >gi|312962260|ref|ZP_07776752.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] gi|311283597|gb|EFQ62186.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] Length = 378 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 174/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + ++++A LL + + Sbjct: 1 MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGGGLALDLLE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + L + + L H A V P L+ ++ + + + Sbjct: 61 LMKHNF-SLPREVLLNPDSMGQYLMHSGKIALLAVQPILITLLLAALIGPVALGGWLFAA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S LV +K+ K IL+ + L+ + +L Sbjct: 120 GSMAPKFSRMNPAAGLKRMFSAKALVELLKALAKFILILFVALSVLSSDVDDLLRIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + H+ V + + + + +D + + KL M+KQE++DE K G P Sbjct: 180 LESAIIHSVQVVGWSALWMSAGLIIIAAVDAPIQLWESHKKLLMTKQEVRDEHKDQEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + KMM A A ++ITNPTHYA+AL+Y + AP+L+AKG + A Sbjct: 240 EVKQRIRQLQREMSQRKMMAAVPDADVVITNPTHYAVALKYDPEKGGAPMLLAKGSDFTA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA + I + E P LARS+F ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAVANEILLLESPELARSIFYSTDLDHEIPAGLYLAVAQVLAYVYQIR 352 >gi|194014696|ref|ZP_03053313.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061] gi|194013722|gb|EDW23287.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061] Length = 362 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D+ +G S + + S L + F + + + + Sbjct: 14 GEKTEKATPKKRQDSRKKGQVAKSTDVNTAISFLLIFLSFFFIGPFMKERIIALIERFYS 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + K+ S+I L L L++P L + M+ GI S +Q + + +KP Sbjct: 74 TTMLMKVS-TSNIHQLFVQLLQETGILLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKL 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRIYSI LV +KS +KI L+G I+L ++ +L L+ Sbjct: 133 EKLDPIKGFKRIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLHF 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + L+MSKQ+IKDE K+S G+P+IK++ K Sbjct: 193 VANMTLIMGLYAAGALMILAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIK 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA Sbjct: 253 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH+I E LAR+L+ QV I+ A+P ++KA+A+++ +Y K Sbjct: 313 KEHDIMTVENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358 >gi|229524122|ref|ZP_04413527.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis VL426] gi|229337703|gb|EEO02720.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis VL426] Length = 376 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEVLAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|157692318|ref|YP_001486780.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] gi|157681076|gb|ABV62220.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] Length = 362 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D+ +G S + + S L + F + + + + Sbjct: 14 GEKTEKATPKKRQDSRKKGQVAKSTDVNTAISFLLIFLSFFFIGPFMKERIIALIERFYS 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + K+ S+I L L L++P L + M+ GI S +Q + + +KP Sbjct: 74 TTMLMKVS-TSNIHQLFVELLQETGLLLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKL 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRIYSI LV +KS +KI L+G I+L ++ +L L+ Sbjct: 133 EKLDPIKGFKRIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLHF 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + L LD + + L+MSKQ+IKDE K+S G+P+IK++ K Sbjct: 193 VASMTLIMGLYAAGALMVLAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIK 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA Sbjct: 253 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH+I E LAR+L+ QV I+ A+P ++KA+A+++ +Y K Sbjct: 313 KEHDIMTVENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358 >gi|121586826|ref|ZP_01676608.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80] gi|153803039|ref|ZP_01957625.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3] gi|153825586|ref|ZP_01978253.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2] gi|229522073|ref|ZP_04411490.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80] gi|254226357|ref|ZP_04919946.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51] gi|121548993|gb|EAX59032.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80] gi|124121437|gb|EAY40180.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3] gi|125621107|gb|EAZ49452.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51] gi|149740737|gb|EDM54836.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2] gi|229340998|gb|EEO06003.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80] Length = 376 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|221635443|ref|YP_002523319.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM 5159] gi|221157327|gb|ACM06445.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM 5159] Length = 363 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 171/345 (49%), Gaps = 1/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +TE + ++ ++A G P S + + +LA +L ++ ++ L + Sbjct: 4 ERTERATPRRRQEARKRGQVPRSADLTSALVLLAGAFFLPWYAGAAGQTLWDYLERAFSG 63 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 R L IV L + +L +P L LF G+ S L+Q V +KP ++ Sbjct: 64 PLPRDLTGP-DIVALAWASGATVLKLALPILGLFAAVGVASTLVQAGFVFAPAVLKPDWR 122 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R+ G +R++S L K+ +KI +V + + + D A P +I Sbjct: 123 RIDPIAGFQRLFSRRGLFETGKALLKIAIVLAVTYPLIQRDLPRYADLTGAEPAAIAQAI 182 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++R + + + L +LD G+ +L+M++ E+K+E++Q+ G+P IK R + Sbjct: 183 GQSMRDLAVRVGAAYLALAILDYGFQRWDLEQRLRMTRHELKEELRQTEGDPEIKARIRR 242 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R +MM +AT+++TNPTH A+ALRY APV+VAKG +A+++ IA Sbjct: 243 LQRQMAMRRMMAQVPKATVVVTNPTHLAVALRYEPRSMRAPVVVAKGAGAVAERITAIAR 302 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H IP+ LA++L++ V + IP Y+AVA +I +Y + Sbjct: 303 QHTIPVLRNQPLAQALYRTVEVGQEIPITLYEAVADIIAYVYRLR 347 >gi|167571643|ref|ZP_02364517.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis C6786] Length = 400 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWLLSGPISEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D ++ LSL + P L L + + + + +++ Sbjct: 60 MLHAAF-SFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAALAAPMALGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I ++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 GRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351 >gi|332140595|ref|YP_004426333.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550617|gb|AEA97335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 374 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ KK++DA +G SRE S ++ + LF SV Sbjct: 1 MADSS---EKTEDPTGKKLDDARKKGQLARSRELSTTLVLIVSAVMFLFVGGWIAESVFK 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + DI+H+ + V+ +++ M+ GI + Sbjct: 58 LTRRMFI-LSRDETYDITHMFGAWGEAFSAVGPAVLLYMVVAMIAGIYGSIALGGFNFTW 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP ++S +G KR++ N LV +KS K++++ + +L L Sbjct: 117 EGAKPKGSKMSPIQGFKRMFGTNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMEL 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L+HA ++ ++++ + + ++D+ + ++ ++KM+KQE+KDE K + G+P Sbjct: 177 YPGNLFHAMDILKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R + + +MM+ +A +++TNPTH+++A++Y + APV+VAKG + +A Sbjct: 237 MVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGIRAPVVVAKGADELA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RKIA +++P+ P LAR++F ++ IP + AVAQ++ +Y K Sbjct: 297 MHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349 >gi|237653600|ref|YP_002889914.1| flagellar biosynthesis protein FlhB [Thauera sp. MZ1T] gi|237624847|gb|ACR01537.1| flagellar biosynthetic protein FlhB [Thauera sp. MZ1T] Length = 380 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 186/352 (52%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE PSS+++E A EG P SRE S F + LL V Sbjct: 1 MAE-DSDLEKTEDPSSRRLEQAREEGQVPQSRELSTFLVTMTGAATLLLLGGWMAGRVMG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 A +R D + ++ +L + A ++P + M+ + + ++ V Sbjct: 60 LFRDGFA-FDRRAAFDENVMLDMLERMLGGALLTLMPLFVALMVAAVAAPMVLGGLVFAP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R+ +G+ R++S++ LV K+ +K +LVG + + L + + + Sbjct: 119 KVLGLKFDRLDPLQGLGRMFSLHGLVEMFKAILKSVLVGGVAALVLWYEFEHLFSLMVEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + T+ ++I+L + L +D+ + Q++ KL+M+K+E+K E K+ G+P Sbjct: 179 LETGMADFSATIVFATLLIVLSLGLLAAIDVPFQLWQYHKKLRMTKEEVKRESKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +++ R R +MM +A +++TNPTH+++AL+Y + APV+VAKG+ +A Sbjct: 239 MIKGRIRAMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAAKMGAPVVVAKGRGELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA E +P+ E P LAR+L+K + AIP Y AVA+++ +Y Sbjct: 299 LKIREIAKESEVPLLEAPPLARALYKHCELEQAIPAALYTAVAEVMAYVYQL 350 >gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-63q42] Length = 516 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 185/348 (53%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK + +GN SRE + ++LA + + FS + ++ S L+ Sbjct: 162 GSADKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 221 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ + + S++ L+ + ++ +P + F++ GI + L Q + +KP Sbjct: 222 LSLDFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKP 280 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 + +++ G K ++S+ +L +K I ++ I +NY +L + +++ Sbjct: 281 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 340 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P +K + Sbjct: 341 YTVKDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAK 400 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+ Sbjct: 401 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 460 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 461 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 508 >gi|253990145|ref|YP_003041501.1| flagellar biosynthesis protein FlhB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639018|emb|CAR67632.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781595|emb|CAQ84758.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica] Length = 383 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A EG SRE S +L + LL+ I S Sbjct: 1 MAE-DSDLEKTEEPTPHKREKARKEGQIARSRELSSIL-MLTSGLSLLWLSGQSIAHELS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + +V + L A ++P ++ + + + V + Sbjct: 59 LMVFEGFNFDHSMVSNDKQMVQQIGRLLRQAVWALLPVFAGLVLVALSAPALLGGLVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+++ G+KRI+S+N L K+ +K VG + L N+ +ML I+ Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPSMLRLIAQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A + +++ + + D+ + + KL+M++QEIKDE K+ G+P Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +IA Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALQYDEKQMSAPKVLAKGAGIIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++ E+ IP+ E P LAR+L++ + IP Y AVA+++ +Y K Sbjct: 299 LRIKEMGTENRIPLLEAPPLARALYRHSEVGGHIPATLYAAVAEVLAWVYQLK 351 >gi|254506872|ref|ZP_05119011.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16] gi|219550157|gb|EED27143.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16] Length = 376 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + + Sbjct: 1 MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVALMWFGDSLARGLYT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L S ++ ++ D + + S +I L+ + + ++ Sbjct: 60 VMERLF-SLSREEIFDHVKLFDIALGSLTSLILPLILILVTLFVAAVAGAAGVGGISFSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR+ I + V +KS +K+ LV + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGIQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K++ G P Sbjct: 179 FPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM +A +I+TNP H+++ALRY Q + AP++VAKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNTDRAPIVVAKGTDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+I + P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351 >gi|146282913|ref|YP_001173066.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri A1501] gi|145571118|gb|ABP80224.1| flagellar biosynthetic protein FlhB [Pseudomonas stutzeri A1501] Length = 378 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +K+E P+ K++ ++ +G SRE S + L + LL ++ + Sbjct: 1 MAESESGADKSEEPTEKRLRESREKGQLARSRELSTVAVTLGGIGGLLASGGGLAQTLMA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ L D +V LL L A ++P L+ ++ I + + + Sbjct: 61 MMQGTFE-LSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWLFSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+KR++S LV +K+ K ++V + + L+ +L Sbjct: 120 KAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLSAYQDDLLSIAKQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + +D+ + KL M+KQE+KDE K S G P Sbjct: 180 LDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVKDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+R + + R + +MM+A A ++ITNPTH+A+AL+Y + AP LVAKG + +A Sbjct: 240 EVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPRLVAKGGDFVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352 >gi|297582018|ref|ZP_06943937.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385] gi|297533713|gb|EFH72555.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385] Length = 376 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE + ++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYNTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile 630] gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile] Length = 604 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 185/348 (53%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK + +GN SRE + ++LA + + FS + ++ S L+ Sbjct: 250 GSADKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ + + S++ L+ + ++ +P + F++ GI + L Q + +KP Sbjct: 310 LSLDFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKP 368 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 + +++ G K ++S+ +L +K I ++ I +NY +L + +++ Sbjct: 369 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P +K + Sbjct: 429 YTVKDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAK 488 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+ Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 549 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596 >gi|289578415|ref|YP_003477042.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus Ab9] gi|297544691|ref|YP_003676993.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528128|gb|ADD02480.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus Ab9] gi|296842466|gb|ADH60982.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 363 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + K+ +DA +G SRE + I+A + L P + + + LL Sbjct: 14 EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLALNILAIPSLEKMMALTKYLLY 73 Query: 68 SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + ++ I L T++ A ++IP +LL + + S +Q V + Sbjct: 74 TYSGANDDVFNVVGIRNLFTYVLQQAISIIIPIILLIFVVSLVSTYLQVGFVFTTEPLAF 133 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ EG KRI+S LV KS K++++ I+ L Y + + + IL Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 +A + + I I + + L LD + + ++ LKMSK++IK+E K++ GNP IK Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYEVSLKMSKEDIKEEFKETEGNPQIKAE 253 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A ++ITNPTH A+AL Y NDAPV++AKGQ++IA ++++ Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + NIPI E LA++L++ I IPP Y+AVA+++ +Y K Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361 >gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-66c26] gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CIP 107932] gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-76w55] gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-97b34] gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-37x79] gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile CD196] gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile R20291] gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile QCD-32g58] gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196] gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291] Length = 604 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 184/348 (52%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK + +GN S+E + ++LA + + FS + ++ S L+ Sbjct: 250 GSTDKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ + + S I L+ + ++ +P + F++ GI + L Q + +KP Sbjct: 310 LSLDFYMNI-NYSSIEKLVIAGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKP 368 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 + +++ G K ++S+ +L +K I ++ I +NY +L + +++ Sbjct: 369 NLSKLNPVSGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P IK + Sbjct: 429 YTVKDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAK 488 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+ Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 549 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596 >gi|90021814|ref|YP_527641.1| flagellar biosynthesis protein FlhB [Saccharophagus degradans 2-40] gi|89951414|gb|ABD81429.1| flagellar biosynthetic protein FlhB [Saccharophagus degradans 2-40] Length = 376 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 176/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P++K+ E A +G P S+E + + ++ + L + F I + Sbjct: 1 MAEEDSAQEKTEEPTAKRQEKAREDGQIPRSKELTTSAVLIVGCVGL-YMFGGQIAQGLA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ + + + D + ++ L +++IP + ++ I + + + Sbjct: 60 DILKFNFTIEREAIFDPNAMLGHLGSSFYLGLKVLIPLFAVLLVAAIAGPIALGGWLFST 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+ G+KR++S+ +LV +K+ K+ +V + L +L Sbjct: 120 KSLAPKLNRMDPVAGLKRMFSVKSLVELVKAIGKVGVVVAFAFVLLNYMKEDLLGLGFEG 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ + I+I + + +DI + KL+M++QEIKDE+K S G P Sbjct: 180 VERGMAHSVYLSIIAAIIISVSTLVIAAVDIPFQIWDNVKKLRMTRQEIKDEMKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + +++MM A A ++ITNPTHY++AL+Y + P+L+AKG + +A Sbjct: 240 EVKGRIRQLQYEMAQNRMMAAVPEADVVITNPTHYSVALKYDPNSMETPILLAKGVDHMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R+IA + I + P LAR+++ ++ IP Y AVAQ++ ++ Sbjct: 300 MKIREIAKANKIEFIQSPLLARAIYHTTEVDEEIPSGLYVAVAQVLAYVFQ 350 >gi|167564493|ref|ZP_02357409.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis EO147] Length = 400 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TEA + K+ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWLLSGPISEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH S + D ++ LSL + P L L + + + + +++ Sbjct: 60 MLHAAF-SFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAALAAPMALGGWLVST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+R++ G+ RI+SI + S K ++VG I ++ + +L + Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAAIWRSKDELLGLATQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H+ L A V M + + + LD+ + Q+ KL+M+K+E+K E +++ G+P Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM A +++TNPTH+A+AL+Y E AP +VAKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A EH++P+ E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 GRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQMK 351 >gi|224826341|ref|ZP_03699443.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002] gi|224601442|gb|EEG07623.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002] Length = 388 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 85/354 (24%), Positives = 175/354 (49%), Gaps = 3/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TEA + ++++ A EGN P SRE S F+ + + LL + + Sbjct: 1 MAE-DSDLERTEAATGRRLQQAREEGNIPRSRELSTFAVTMTG-VALLMAMGERLGNFML 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + ++ ++ ++P + + + L+ L Sbjct: 59 QLMRRLFTFDHDMVQHTDPVLLRFKESLTDTLLQLMPLFGGLALVAVAAPLLVGGWNLTF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ GI+R++S++ L +K+ +K +++G + T + ++ I+ Sbjct: 119 KGIEPKLSKLNPAHGIQRMFSLSALTEALKAILKSVVIGGVATWVIWNERAELIGLIAMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L ++++ + L V+D+ + ++ +L+M+K+E+K E K+ G+P Sbjct: 179 LETALGKMMQLTFHTFLLVVGAMLLLVVVDVPFQIWNYHKQLRMTKEEVKQEYKEQEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM+ A +I+TNPTHYA+AL+Y + AP ++AKG+ +A Sbjct: 239 EVKGRIRQLQRQAAQRRMMQEIPSANVIVTNPTHYAVALKYTEG-MRAPQVIAKGRLKLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +K+ EH + + PS AR+L+ + +P Y A AQ++ +Y K+ Sbjct: 298 EKIIDTGREHRVTVMRVPSFARALYFHSELGEEVPSRLYGAAAQILAYVYQLKL 351 >gi|327481253|gb|AEA84563.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166] Length = 378 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +K+E P+ K++ ++ +G SRE S + L + LL ++ + Sbjct: 1 MAESESGADKSEEPTEKRLRESREKGQLARSRELSTVAVTLGGIGGLLASGGGLAQTLMA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ L D +V LL L A ++P L+ ++ I + + + Sbjct: 61 MMQGTFE-LSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWLFSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+KR++S LV +K+ K ++V + + L+ +L Sbjct: 120 KAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLSAYQDDLLSIAKQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + +D+ + KL M+KQE+KDE K S G P Sbjct: 180 LDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVKDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+R + + R + +MM+A A ++ITNPTH+A+AL+Y + AP LVAKG + +A Sbjct: 240 EVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPRLVAKGGDFVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH + + E P+LAR+++ ++ IP Y AVAQ++ +Y + Sbjct: 300 LKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352 >gi|85716547|ref|ZP_01047517.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] gi|85696548|gb|EAQ34436.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 359 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DAL G+ S+E + + +I + L F Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNAWFAIAGATLVLSTFAGSIGDGFRM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+A++ Q + D ++ L + + + LLL M + ++Q V + Sbjct: 61 PLRNLIANSWQIR-TDGPGLLALAEQIGYCLAAALGVPLLLLTMAAVAGNVVQHRFVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++S+ G KRI+ + NF K K++ +G ++T L + + + Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAVANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P+++L ++L +++ +A + + D + Y QW+ + KMS +E+K+E KQS G+P Sbjct: 180 PNALLGITKSLTLQLLGAVMVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSYERG-MSAPVCVAKGVDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+IP+ E LAR+L+ V I+ IP Y AVA++I + K Sbjct: 299 LKIREIAREHDIPVVENVPLARALYAAVEIDDEIPVEHYHAVAEIIGYVMGLK 351 >gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile ATCC 43255] Length = 604 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 183/348 (52%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK + +GN S+E + ++LA + + FS + ++ S L+ Sbjct: 250 GSTDKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ + + S I L+ + ++ +P + F++ GI + L Q + +KP Sbjct: 310 LSLDFYMNI-NYSSIEKLVITGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKP 368 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 + +++ G K ++S+ +L +K I ++ I +NY +L + +++ Sbjct: 369 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 Y V +L I + + + V D + + +L+M+KQE+KDE K S G+P IK + Sbjct: 429 YTVKDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAK 488 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R + M+A AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+ Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA + IPI E +AR L+KQV I+ IP Y+A A+++ +Y K Sbjct: 549 IAKGNEIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596 >gi|88858095|ref|ZP_01132737.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] gi|88819712|gb|EAR29525.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2] Length = 376 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 169/353 (47%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+SKK+EDA +G S+E ++ I L+ + + Sbjct: 1 MAEG-SDQEKTEEPTSKKLEDARKKGQIARSKETGTVVVLIMSAISLIIYGPEIGMGLKR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + LL + + D + + + ++ + +L+ ++ + Sbjct: 60 VMARLL-DLNRTEAFDTTKMFAVWGDIAKELWFGMTMFVLVILVAAFIGNTFLGGFNFSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++S +G+ R++ + K +K +LV + + ++ +L Sbjct: 119 SAAAPQANKLSPAKGLVRMFGPQAAIELFKGLLKFLLVAVTAVLLIKFYFYEILHLSLET 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + HA + + + + + + V+D + +LKM+ QE+KDE K S G+P Sbjct: 179 APSNIQHALTMLAWMFLGLSCTLILVAVVDAPFQLWNHNKQLKMTLQEVKDEYKNSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + R + +MM+ A +I+TNPTHY++AL+Y AP+++AKG + IA Sbjct: 239 QIKARIRRTQREMSQRRMMQDVPDADVIVTNPTHYSVALKYDTDRAGAPIVLAKGIDEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++RKIA EH++PI E P L RSLF I IP + AVAQ++ +Y K Sbjct: 299 LQIRKIAKEHDVPILESPMLTRSLFHTTDIGQQIPDQLFIAVAQVLAYVYQLK 351 >gi|160876164|ref|YP_001555480.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS195] gi|160861686|gb|ABX50220.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS195] gi|315268360|gb|ADT95213.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS678] Length = 376 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 166/340 (48%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +++ + P + + + + + + + + Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + ++ + + +LL ++ + + + P ++S Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G+KR++ + LV K K +V + L+ + ++ S + +YHA + Sbjct: 132 AGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R + + R Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA EHNI Sbjct: 252 AQRRMMTEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ ++ IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351 >gi|78044903|ref|YP_359855.1| flagellar biosynthetic protein FlhB [Carboxydothermus hydrogenoformans Z-2901] gi|77997018|gb|ABB15917.1| flagellar biosynthetic protein FlhB [Carboxydothermus hydrogenoformans Z-2901] Length = 353 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ +TEAP+ +++ +A G S+E + F+ + LL Y Sbjct: 1 MADEQRDQ-RTEAPTPRRLAEARRRGQVFKSQELN-FAVMFLIFFLLLLVLGGYFYQQFY 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +L + LL + S ++V+P LLL M+ GI L+Q + Sbjct: 59 LLSRNVFRNMFIELTPSAVRGLLLYYFGWS-FKIVLPFLLLGMLAGIALNLVQVGFIFTT 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KPS++R++ G RI+S N V +K+F+K + +I + + N + I Sbjct: 118 EPLKPSWERINPLSGFSRIFSRRNWVELLKNFLKFGFLALVIYLRIKSNLPLIFQKIGQA 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P F ++K+ + LL + +D + ++Y LKM+KQE+K+E +Q+ G+P Sbjct: 178 PAEYFNGYFSLIKKIALDTLLVLFLFGAVDYWYQRREYYQSLKMTKQELKEEYRQTEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R + R +++ +AT+++TNP H A+AL+Y + + AP +VAKG +A Sbjct: 238 LIKARLRERQRQIALNQIAREVPQATVVVTNPVHIAVALKYERGKMAAPKVVAKGAGFLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++IA HN+ I E +AR L+K + IP Y AVA++I +Y KK Sbjct: 298 EKIKEIARAHNVEIVENVEVARFLYKNCEVGEEIPEELYNAVAEIIAWVYRKK 350 >gi|328545474|ref|YP_004305583.1| flagellar biosynthetic protein FlhB [polymorphum gilvum SL003B-26A1] gi|326415215|gb|ADZ72278.1| Flagellar biosynthetic protein FlhB [Polymorphum gilvum SL003B-26A1] Length = 358 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 208/354 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + KTE P+ KKI DA+ +GN P S+EAS+ ++ LA L+ F G + S Sbjct: 1 MSDQPDKETKTEEPTEKKIRDAIEKGNTPTSKEASVLATFLAILLIGSFATVTGARRLVS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ A L + + + L L+L A R + P + + G+ + Q P + Sbjct: 61 GLSGLIDDAGGFTLGNGADALLLTHALALEAGRFLAPIVATLAVAGLAAAWFQNAPRIVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP R+SL +G +R++ I V F K+ +K + I + L N +++ + ++ Sbjct: 121 HRIKPDPSRLSLLKGWQRLFGIQGAVEFGKALLKFGAISLIALLLLRANEAGLVNAMFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ ++L I + L D+ W+ W L+M++QEIKDE KQ+ G+P Sbjct: 181 PSALPETILHLAMRLLSGICIATIVLVAFDLVWARVHWRQNLRMTRQEIKDEHKQTEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQ+S+AR R R++MM A +AT++I NPTH+A+ALRY + E AP++VAKGQ+LIA Sbjct: 241 LVKARQRSLARDRARNRMMAAVPKATLVIANPTHFAVALRYDRDETAAPIVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 K+R+IA +++IP+ E LARSL+ I+ IPP FY+ VA++I +Y +K+ Sbjct: 301 LKIRQIAEDNDIPVIENRELARSLYASTEIDRMIPPQFYRMVAEVICYVYSRKM 354 >gi|224373568|ref|YP_002607940.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH] gi|223588472|gb|ACM92208.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH] Length = 351 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 187/353 (52%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ KK++DA EGN P S E S F + +I ++F+ Y + Sbjct: 1 MADD---MEKTEDPTPKKLQDARKEGNVPKSMETSGFVVLFVAIIVIIFYLKYITYYLEK 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++I + ++ +L+ L+ P L ++ GI ++Q + + Sbjct: 58 FYMYYTSFIGVEITKNI--VFEIVLKSALNFFILLAPLLGAVVLAGILGNVMQFGFLFTV 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F++++ +GIKR++S+ LV +K +K+ + + + + + Sbjct: 116 KPIIPKFEKINPIKGIKRLFSLKTLVEGIKMTLKVSVAFGVGAWLFMKFLEEIPKLELMS 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L +D + + + L+MSKQEIKDE KQ+ GNP Sbjct: 176 FFEQLKWFEEKALIIISAMLAVFLVFAAIDFIYQRYSYKKSLRMSKQEIKDEYKQTEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R + +MM +A ++ITNPTHYA+A+RY +T+++AP ++AKG + +A Sbjct: 236 EIKAKIRQLQREMAKKRMMSEVPKADVVITNPTHYAVAIRYDKTKDEAPRVIAKGVDNLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA EH+I I E P LAR L+K V I+ IP YKAVA+++ +Y K Sbjct: 296 LKIKEIAREHDIMIVENPPLARELYKLVDIDELIPQKLYKAVAEVLAFVYKAK 348 >gi|254291356|ref|ZP_04962149.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226] gi|150422686|gb|EDN14640.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226] Length = 376 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE +S++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATSRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|88704274|ref|ZP_01101988.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71] gi|88701325|gb|EAQ98430.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71] Length = 384 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 82/353 (23%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +TE P+ ++ E+A +G P SRE + S+L + L + + + Sbjct: 1 MAEEQTGQERTEPPTERRKEEARKKGQVPRSRELNTMLSLLITGVGLWVLGGSLVDDLFA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S + D + H++ + + P + ++ + L+ ++ Sbjct: 61 -ITISGFSVDRAAAFDAEQLPVRFMHMASATLLALAPLFAVTVVAALAGPLLMGGWSFSV 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +++ +G+ R++S+ L K+ +K +L+ + + + +L + Sbjct: 120 QAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMAVAYLMIMAFERDILTLSALT 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + LI++ + + + D+ + + +L+M++QE++DE+K++ G P Sbjct: 180 PGEASSRVVSMLVIALIVLSSAMVLIVMFDVPFELWNFNKQLRMTRQEVRDEMKETDGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +++ R + +MM+ A ++ITNPTH ++AL Y AP +VAKG++L+A Sbjct: 240 EVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHVSIALSY-ADGAGAPRVVAKGRDLLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R IA EH++P++E P LAR+L+ + IP Y AVA+++ ++ + Sbjct: 299 LQIRTIATEHDVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQLR 351 >gi|217972629|ref|YP_002357380.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS223] gi|217497764|gb|ACK45957.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS223] Length = 376 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 166/340 (48%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +++ + P + + + + + + + + Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + ++ + + +LL ++ + + + P ++S Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G+KR++ + LV K K +V + L+ + ++ S + +YHA + Sbjct: 132 AGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R + + R Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA EHNI Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ ++ IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351 >gi|323703184|ref|ZP_08114837.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans DSM 574] gi|323531843|gb|EGB21729.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans DSM 574] Length = 354 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 104/349 (29%), Positives = 190/349 (54%), Gaps = 2/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + KTE + +++++A +G P S + + +LA I+ L I Sbjct: 3 EGSQEKTEQATPRRLQEARRKGQVPKSADLNGALLLLAAGIFALMAKDSLISHTQRAFFG 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + R+ +D S +V L +++ +P L+ M+ +G+ + Q + + Sbjct: 63 YFNNLVVRRPQD-SQLVEYLIDFTVNIFASFMPFFLILMVVAVGANMAQVGFLFAPEVIL 121 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P + ++ G+KRI+S +L +KS +K+ILVG +I ++ + +L + P ++ Sbjct: 122 PKLEHLNPINGLKRIFSGRSLFELVKSILKVILVGWVIYAAVRGEFANLLAIFQSPPQTM 181 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L KV+I L++LD+ + + + +++MSKQE+K+E KQ+ G+P IK Sbjct: 182 LDQVLTVALKVIIWGTAAYLALSILDLMYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + R + + + + +AT+++TNPTHYA+AL+Y + DAPV+VAKG +L+AK++R Sbjct: 242 WLRRRQRQLLMNLVRKEVPQATVVVTNPTHYAVALKYERD-MDAPVVVAKGVDLLAKQIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++A EH+IP+ E +AR L+ V I AIP Y+AVA+++ +Y K Sbjct: 301 EVAREHDIPVIENVEVARFLYAHVEIGQAIPVEMYQAVAEILAMVYRLK 349 >gi|302389679|ref|YP_003825500.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani DSM 16646] gi|302200307|gb|ADL07877.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani DSM 16646] Length = 357 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 180/347 (51%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + ++ + A G SRE + +LA + L F + S L Sbjct: 7 SQEKTEKATPRRRQKARERGQVFSSRELNSALILLASFVLLKIFGIYIFENTGSFLRQFF 66 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 R+ IS I + + + P + ++ G+ +Q V +L + P Sbjct: 67 IENLIRQDLSISDIYGIFYSSIVFVLKSTAPVAVGIVLVGLLVNFLQVGFVFSLEPISPK 126 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 R++ EG KRI+S +L+ +K+ VKIIL+ I E T+ + + L Sbjct: 127 LDRINPVEGAKRIFSKRSLIELVKALVKIILIIYIFYGGFVEIKDTVALMLDMSFTESLG 186 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + ++ + + + + L+VLD G+ ++++ L MSK+++K+E+K+ GNP IK+R Sbjct: 187 YFTSMMFRLGLKVGIALLVLSVLDYGYQWYEYEKSLMMSKEDVKEELKEVEGNPQIKSRI 246 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + R R +MM+ +A ++ITNPTH A+AL Y + + APV++AKG IA+K+++I Sbjct: 247 RQVQRQMSRRRMMQEVKKADVVITNPTHIAIALGYDASVHAAPVVLAKGTGAIAEKIKEI 306 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +IPI E LA++LFK V + IP FY AVA+++ +Y K Sbjct: 307 AEREDIPIVENKPLAQTLFKSVEVGDIIPEEFYNAVAEILAFVYSLK 353 >gi|329904716|ref|ZP_08273917.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] gi|327547860|gb|EGF32618.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] Length = 379 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++ KTE S ++I+ A G+ P SRE + +LA L + + + + Sbjct: 1 MSD-ESDMEKTEPASQQRIDKARENGDVPRSRELATCLVLLAAGGGLYISGANMLRQLKA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + + D S ++ L P + ++ + S L+ + + Sbjct: 60 ALASGL-TFDRGQAFDFSLLLSRLGSHLGDLLLAFAPLAGILILVALASPLLIGGWLFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F R++L G+ +I S+N LV K+ K ++VG+I + + +L + Sbjct: 119 QALAPNFGRMNLFSGLLKIVSLNALVELGKAVAKAVIVGSIAYLVMRSEIDEVLGLMVEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H + ++I++ + + +D + + K+ M++QE++ E K+S GNP Sbjct: 179 AEAGSMHMAKLLFSTYMLIVMGLVLIAAVDAPYQMWSYAKKMMMTRQEVRQEAKESEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + ++ R R +MM A +++TNPTHYA+AL+Y + AP +VAKG + +A Sbjct: 239 EIKAKIRAQQREMARRRMMSEVPTADVVVTNPTHYAVALKYTDGKMGAPQVVAKGADAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A +N+P+ E P LAR+LFK V + AIP Y AVA+++ ++ K Sbjct: 299 ARIRELAAANNVPLLEAPPLARALFKHVELGDAIPETLYTAVAEVLAYVFQLK 351 >gi|254497495|ref|ZP_05110288.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12] gi|254353310|gb|EET12052.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12] Length = 378 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + D KTE PS+K++++A +G S++ + ++L + L F + Sbjct: 1 MSEQNN-DEKTEQPSAKRLKEARQKGQVARSKDFNTTVALLFTAVGFLAFGKQLSDQLAL 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + T + + + L L+ ++P L+ + + + L+ V + Sbjct: 60 MMRHSFEFDTNVIITPVVSLERLF-FLAKMGFWALVPILIFIFVVSLAAPLVMGGWVFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P F R+++ +G+KR+ S+ N V +KSF K +LV ++ I L T+L Sbjct: 119 KVVQPKFSRLNVFQGLKRMVSLKNFVEMIKSFFKFVLVASVAVIVLKSQIPTLLSLAHVP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + V K +++ + + +LD+ + ++ +KM+KQE++DE K++ G P Sbjct: 179 IETAIGSGALIVVKCFVLVAASLLLIAMLDVPFQLYEHNKNMKMTKQELRDEYKETEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +KN + + + +MM A +++TNPTHYA+A+RY + N APV+VAKG++L+A Sbjct: 239 EVKNAIRRAQQEIAKRRMMTEIPTANVVLTNPTHYAVAIRYKEKGNKAPVVVAKGKDLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ K+A EH IPI P LAR+L+ +N+ IP Y AVAQ++ ++ + Sbjct: 299 FQINKVAKEHEIPIISVPPLARALYFSTKLNAEIPRGLYIAVAQVLAYVFQLR 351 >gi|312792666|ref|YP_004025589.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179806|gb|ADQ39976.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor kristjanssonii 177R1B] Length = 366 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 187/344 (54%), Gaps = 1/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S + + ++ Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFAYSSIVEPLQQGSKYFFSN- 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 LED+ LL+ + ++ ++++P L M+ Q ++ +K SF++ Sbjct: 75 LNYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLITGQSLKMSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYEMNVLTIVKFSF 194 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + Sbjct: 195 DSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A + Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIK 314 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H I I E LAR+L+ I IPP Y+AVA+++ +Y K Sbjct: 315 HRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358 >gi|229513771|ref|ZP_04403233.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21] gi|229348952|gb|EEO13909.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21] Length = 376 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE ++++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|294635599|ref|ZP_06714076.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685] gi|291091051|gb|EFE23612.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685] Length = 401 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 174/350 (49%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ KTE P+ +IE A +G P SRE + + L LL S+ + Sbjct: 16 EESDLEKTEDPTPHRIEKAREKGQIPRSRELTSMLMLAVGLAILLLGGDYLASSLAVMIA 75 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L L + ++ L L A ++P LL M+ G + ++ + N + Sbjct: 76 QGL-HFDHLLLSNDRQMLIQLGMLLRQAVAALLPVLLGLMLVGWCAPMLIGGFLFNPGSI 134 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K R++ G KR++S L +K +K LVG + L + ML I+ + Sbjct: 135 KCELNRLNPLTGFKRMFSSQVLAELLKGVLKATLVGCVTGWFLWHYWPRMLRLITESSLE 194 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + A V ++++L + + D+ + +KL+M+KQEIKDE K+ G+P +K Sbjct: 195 AMGDALHLVGMCGLLVVLGLLPMVGFDVFYQLWSNLNKLRMTKQEIKDEFKEQEGDPHVK 254 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG IA+++ Sbjct: 255 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGNIAQRI 314 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + EH IP E P LAR+L++ I AIP Y AVA+++ +Y K Sbjct: 315 KALGMEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 364 >gi|302392376|ref|YP_003828196.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM 5501] gi|302204453|gb|ADL13131.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM 5501] Length = 353 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 180/345 (52%), Gaps = 1/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ K+ ++A EG S+E S+ ++L I L F +Y ++ Sbjct: 4 EEKTEDPTPKRRQEAREEGQVAQSQELSMAFTLLFSFIMLFFLMDNILYESMEFMNKYFT 63 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L ++ LL L RLV P + + + G+ L+Q + ++P Sbjct: 64 DYMTMTL-NLQTFYTLLLELMQFIFRLVAPLMFVVALVGVVVGLLQTGFLFTPTSLQPDP 122 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ G K+I+S + F KS +KI +VG I +++ +N ++ F + ++ Sbjct: 123 SKLDPVSGFKQIFSKQTVAEFFKSILKISIVGGIAYLTIKDNLPQLIMFSKMGLNQVVSL 182 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + I + L + L +LD + + +LKM+KQE+K+E KQ+ GNP IK RQK Sbjct: 183 IGSIIYSLAIKVSLILILLGILDFIYQKWEHEQQLKMTKQEVKEEKKQTEGNPEIKKRQK 242 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + ++MME+ A ++ITNPTH A+A+++ DAP++VAKG+ IA K++K A Sbjct: 243 EKQQEMAMNRMMESVPEADVVITNPTHIAVAIKFDIDNMDAPIVVAKGKGEIAHKIKKKA 302 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 E I I EE LAR+L+ QV I IP Y+AVA+++ +Y Sbjct: 303 EECGIEIVEEKPLARALYGQVEIEEEIPMELYQAVAEILAYVYQL 347 >gi|23099029|ref|NP_692495.1| flagellar biosynthesis protein FlhB [Oceanobacillus iheyensis HTE831] gi|22777257|dbj|BAC13530.1| flagella-associated protein [Oceanobacillus iheyensis HTE831] Length = 359 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 174/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK D +G S++ + +L C I L F S + +T Sbjct: 12 GEKTEKATPKKRLDERKKGRVAKSQDVNTALLLLGCFIALFVFGSYMLQYMTGFFEKSFT 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L + ++ + SL A ++ P +++ ++ G+ + L+Q + + +K Sbjct: 72 EYIHWDLTE-KNVQLMFNSASLDAGMMLAPIMIIAIITGMAANLVQVRFLFSTEPLKFDL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K++ +G KRI+SI LV F+KS +KI+ VG + + ML + L Sbjct: 131 KKIDPIQGAKRIFSIRALVEFLKSMLKIVFVGIVTFYVIWIFKDDMLMTAFLDAKGALGF 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + ++ + L + D + + ++MSKQ+IKDE K G+P+IK++ K Sbjct: 191 FATVTAIMGFAAIILLVFLALFDYWYQKFDFEKNIRMSKQDIKDEYKNVEGDPLIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM A +IITNPTHYA+A++Y +++ +AP ++AKG + IA+K+++IA Sbjct: 251 EKQRQMATRRMMSEVPNADVIITNPTHYAVAIKYDESKANAPYILAKGTDQIAQKIKEIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H++ + E LAR L V I IP +++AVA+++ +Y + Sbjct: 311 KNHDVIMVENRPLARGLHDAVEIGEIIPEAYFQAVAEVLAYVYRME 356 >gi|114706765|ref|ZP_01439665.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506] gi|114537713|gb|EAU40837.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506] Length = 362 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 127/349 (36%), Positives = 200/349 (57%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ KTE P+ KKI D + +GN P SREA + +S LA +++ Y + + Sbjct: 1 MAESEDRSQKTEQPTEKKIRDTIEKGNLPNSREAPVLASFLAISLFIALQARESGYRLLT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + Q +LE + +L+ LS A+ ++P + + GI + ++Q P +N Sbjct: 61 TLQTTFDNPLQWELETSRDALHVLSVLSTEAAIFLVPVAIFLCIGGILASVLQNPPQVNF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +S G+KRI+ L F K+ K +++G ++ + N TM+ + A+ Sbjct: 121 ERIKPKASNISPASGLKRIFGPRGLTEFAKAVFKFLMIGVVVGTLIVSNLGTMIQTMLAD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + K+L + + L DI + W + MSKQEIKDE KQ+ G+P Sbjct: 181 PVQVPELVLDLAMKLLSGVSIATIVLVAADIAMTRIHWRRDIMMSKQEIKDEHKQTDGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K RQK IAR R R +M+ A AT++I NPTHYA+ALRY + E AP++VAKG +L+A Sbjct: 241 MVKQRQKQIARERSRKRMIAAVPNATLVIANPTHYAIALRYKREEGGAPMVVAKGTDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 K+R++A E IP+ E+ LARS++ V I+ IPP F+KAVA++IY + Sbjct: 301 LKIREVAEEKEIPVIEDKLLARSMYDHVHIDQMIPPEFFKAVAEIIYYL 349 >gi|153213288|ref|ZP_01948700.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587] gi|229528868|ref|ZP_04418258.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)] gi|124116088|gb|EAY34908.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587] gi|229332642|gb|EEN98128.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)] Length = 376 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +TE ++++++ A +G S+E + S ++ + L++F + Sbjct: 1 MAESD-GQERTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ ++ D+ + ++ ++ ++ L + + + Sbjct: 60 AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G+KR++ + + V +KS +K++LV + + + + Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++HA + +++I + + +DI + Q +LKM+KQE+KDE K + G P Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351 >gi|188586038|ref|YP_001917583.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350725|gb|ACB84995.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 363 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 2/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ K ++ +G S E + ++A L F + + Sbjct: 14 QEKTETPTPKHRRESRKKGQVAKSTELTSALLLMATFSTLYIVFPYSFDRFMNFAKQFWS 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + I LL + + + P +++ ++ G+ S L+Q +L + +KP Sbjct: 74 NINTIN-YTMDEIHSLLITMMMEGAVFAAPVIIVAVLIGLISNLMQVGILLTGDPLKPKL 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R+ +G ++I+S +V KS K++++G I I + F I Sbjct: 133 ERLDPIKGFQKIFSKRAVVELTKSLFKMVVIGIIAYILFNNHMEHFPYFYDMTVMQIAVE 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 ++ + + + L++LD + + LKM+KQ++KDE KQ+ G+P ++++ K Sbjct: 193 VGQLTWALIFRVGMALLFLSILDYVYQVWEHEQNLKMTKQQVKDEHKQTEGDPQVRSKMK 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R + +MM A ++ITNP H A+AL+Y + + AP+++AKGQ +A+K+++IA Sbjct: 253 EKQREISKKRMMSEVPEADVVITNPVHIAVALKYDEGDT-APMVLAKGQGHVARKIKEIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +HN+ + E LARSL+ V I IP Y+AVA+++ +Y K Sbjct: 312 EDHNVVVMENRQLARSLYFSVEIGDFIPEELYQAVAEVLAFVYRLK 357 >gi|325920558|ref|ZP_08182480.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC 19865] gi|325548951|gb|EGD19883.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC 19865] Length = 376 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI S Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFGLMALARGIGDGAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG ++ +++ + ++ Sbjct: 120 KAIMPDLNKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASLCISKGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIREVCEQHRVSIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|312135835|ref|YP_004003173.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor owensensis OL] gi|311775886|gb|ADQ05373.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor owensensis OL] Length = 366 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 185/344 (53%), Gaps = 1/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S + + + Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLMSILFLKFGYSLITQPLQAFSTYFFGNL 75 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 +E++ LL + ++ ++V+P L M Q ++ +K SF++ Sbjct: 76 D-YNIENVRDASRLLGLIVTTSLKIVLPFCLAVMFVATIVEWAQGSFLITAESLKISFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLVIGYTGYSYTKSFAKKLLEMYEMNVLTIVKFSF 194 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + +++ + + + ++D + Q+ KL M+K+E+K+E KQ+ GNP IK+R + Sbjct: 195 DSAVNLILWMSVMFFGIAIIDFTFQRWQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIRER 254 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M + RA ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A + Sbjct: 255 QRRISLQRMFQQLPRADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAMK 314 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +NI I E LAR+L+ I IPP Y+AVA+++ +Y K Sbjct: 315 YNIEIVENKELARALYNICEIGDFIPPELYQAVAEVLAYVYSLK 358 >gi|126175115|ref|YP_001051264.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS155] gi|125998320|gb|ABN62395.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155] Length = 376 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 164/340 (48%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ ++IE A +G S+E + +++ + P + + + + + + + + Sbjct: 13 PTGRRIEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + ++ + + +LL ++ + + + P ++S Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G KR++ + LV K K +V + L+ + ++ S + +YHA + Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K R + + Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQHEL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA EHNI Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ ++ IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351 >gi|322382375|ref|ZP_08056282.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp. larvae B-3650] gi|321153728|gb|EFX46103.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp. larvae B-3650] Length = 378 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK E+A +G S E + + LL F + + L Sbjct: 29 SGEKTEKATPKKREEAKKKGQVAKSMEIPASLILFFTFLGLLLFSGFMKDRLLGLVTYTL 88 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + ++++ + HL A L+ P ++ ++ + Q + +K Sbjct: 89 EHDLVMNV-TLNNVQMMFLHLIGEAFLLLAPIFIISVVIAFFANYAQIGFLFTGEPLKMK 147 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F +++ EG KRI+S+ +++F+KS +K+I++ I+ +++ ++ +L Sbjct: 148 FNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQDMLP 207 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++ + I + + LD + ++ L+MSKQEIKDE K+S G+P+IK + Sbjct: 208 YIGSLTVQLGLKIGGVLIAIAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPLIKGKI 267 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A +IITNPTH+A+ALRY E +AP ++AKG +LIA K++++ Sbjct: 268 RERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIALKIKEV 327 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E+ + I E LAR+L+ QV I AIP ++AVA+++ +Y K Sbjct: 328 AKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 374 >gi|307610486|emb|CBX00058.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 130b] Length = 425 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ + +L + F + S Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + L ++ + L L+ S V+P LL+ + + + L+ V + Sbjct: 61 IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R+++ +G KR+ S+ + +K+F+K +LV + + L +L+ A Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFIEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A Sbjct: 240 EVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ + Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352 >gi|325917832|ref|ZP_08180011.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC 35937] gi|325535943|gb|EGD07760.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC 35937] Length = 376 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 179/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+D +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESDDGGERTELPTEKRLREAREQGNFPQSRELSTAA-VFGAGVFGLMALAGGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S R E + L L +++P + + ++ G+ L+ + Sbjct: 60 VWMKTALSPDPRMREHPMALFGHFGDLLLQLLWVMLPLIGVCLLAGLAGPLMMSGLHFSS 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + ++++ + ++ Sbjct: 120 KAIMPDLTKLNPMNGIKRMWGSNSLAELVKSVLRLLFVGLAAWLCISKSLPGLRALVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIRETCEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|307824492|ref|ZP_07654717.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum SV96] gi|307734476|gb|EFO05328.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum SV96] Length = 374 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 176/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ND KTE P+ K++ DA +G P SRE + F ++A LL + Sbjct: 1 MSDNDD---KTEDPTGKRLADARKKGQIPRSRELNTFVILMASATMLLTQGGTIGNGLLK 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D I L + L+ P + + ++ I + + V + Sbjct: 58 IMRTTFR-LSRAAIFDPDSITLYLKQAMIDTVMLLAPFMAVMVVVAIVTPISMGGWVFSW 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + +++ GI RI++I LV K+ +KI+LV + +L + Sbjct: 117 EAIAFNPSKMNPIAGIARIFAIRGLVELFKALLKILLVFAVAVALYRSFIGELLSLGGES 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + HA + ++++ + + ++D+ + +KMSKQEIKDE K + G+P Sbjct: 177 PIHSIGHALDIIGTCILLLSSSLILVVMIDVPYQLWDHSKNMKMSKQEIKDENKDAEGSP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K RQ+ + + +MME +A +I+TNP+HYA+AL+Y Q N AP LVAKG +LIA Sbjct: 237 EVKGRQRRMQMETAQRRMMEEVPKADVIVTNPSHYAVALKYDQNSNSAPKLVAKGVDLIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R A +P+ P LAR+L+ ++ IP Y AVAQ++ +Y K Sbjct: 297 AQIRNAAIGSGVPLVASPPLARALYYSTELDREIPQGLYLAVAQILAYVYQLK 349 >gi|291288733|ref|YP_003505549.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM 12809] gi|290885893|gb|ADD69593.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM 12809] Length = 352 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ KK+ DA NEGN SRE ++L + ++ ++ + Sbjct: 1 MADE---QEKTEDPTGKKLTDAKNEGNVAKSRELPAAVTLLLVTFFFYYYGPYLMHGLAR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + +H + L + + +++L+ P + L ++ G+ S ++Q + Sbjct: 58 LIREIFMMTNYEINTQSAHKIMLFS--IIESAKLLAPFMALVLVVGVASNVLQTGFMFTP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +R+ +G R +S +LV MKS K+ +V + + + ++ T++ + Sbjct: 116 KALSAKLERIDPIKGFGRFFSKKSLVELMKSLFKVFVVTYVAYLIVKKHIVTIISMADMD 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + I V +++ + L + + D + +Q+ LKMSK E+K+E KQ+ G+P Sbjct: 176 FYDIFSVFGKIVYEIMWKVSLLALFMALADFIFQKYQFKQDLKMSKHEVKEERKQAEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +SI R R +MM+ ++ +++TNPTH+A+AL+Y E+ APV++AKGQ L+A Sbjct: 236 HVKGRIRSIQREMARKRMMDDVPKSDVVVTNPTHFAVALKYSPGEDRAPVVMAKGQRLMA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++IA + I + E+P +ARSLFK V I IP YKAVA+++ + K Sbjct: 296 LRIKEIAKQSGILVHEDPPIARSLFKTVDIGDEIPENLYKAVAEILALVDKFK 348 >gi|75675330|ref|YP_317751.1| flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi Nb-255] gi|74420200|gb|ABA04399.1| Flagellar biosynthetic protein FlhB [Nitrobacter winogradskyi Nb-255] Length = 359 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 189/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DAL G+ S+E + + I + L F Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLSTFSGSIGSGFEL 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+A++ Q + D ++ L + + + LLL MM + +IQ V + Sbjct: 61 PLRNLIANSWQIR-TDGPGLLALAEQIGYRLAAALGVPLLLLMMAAVAGNVIQHRFVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++S+ G KRI+ NF K K++ +G ++T L + + + Sbjct: 120 ETLKPKLSKISMVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P+++L ++L +++ +A + + D + Y QW+ + KMS +E+K+E KQS G+P Sbjct: 180 PNALLGITKSLTLQLLGAVIVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSYERG-MSAPVCVAKGVDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+IP+ E LAR+L+ V I+ +P Y AVA++I + K Sbjct: 299 LKIREIAREHDIPVVENVPLARALYAAVEIDDEVPVEHYHAVAEIIGYVMGLK 351 >gi|148256775|ref|YP_001241360.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. BTAi1] gi|146408948|gb|ABQ37454.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. BTAi1] Length = 359 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 194/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D ++KTE P+ K+++ AL G+ S+E + + I A + + F +V Sbjct: 1 MADEDDSEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMSTFSGSIGTAVLV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+A++ D + ++ L LS + + +L+ M+ I ++Q V + Sbjct: 61 PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+F ++S G KR++ NF K K++L+GT++ + L + + + Sbjct: 120 EPLKPNFGKISPLAGAKRLFGKQAAANFAKGIFKLVLLGTVMVMILWPERLRLESLLHMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L + ++ ++ +A + + D + Y QWY + KMS QE+K+E KQS G+P Sbjct: 180 VSELLGVTISLTKHLMGSVVALLALVAIGDYLFQYRQWYERQKMSVQEMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALAYERG-MSAPVCVAKGVDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IPI E LAR+L+ V I++ IP Y AVA++I + + Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDAEIPVEHYHAVAEIISYVMGLR 351 >gi|89098625|ref|ZP_01171507.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911] gi|89086587|gb|EAR65706.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911] Length = 360 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK +D+ +G S++ + +LA ++LLF + L Sbjct: 12 SGEKTEKATPKKRQDSRKKGQVAKSQDVNTALVLLAVFLFLLFAGGYLKNIIMYLLTHSF 71 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 +L + S++ + + + + P +L+ M+ G + +Q + + ++ Sbjct: 72 QEFMLMELTE-SNVQAIFLAVMKELALFLGPVMLIAMIAGAAANYMQVGFLFSTEAIQFK 130 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +++ +G KRI+S+ +V +KS +KI VG + + L +L +P + L Sbjct: 131 LEKIDPIKGFKRIFSMRAIVELLKSVLKIGFVGAVTFVVLWMRIDEILMLSQKSPGAALI 190 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ + + L+VLD + + + ++MSKQ+IKDE K G+P+IK++ Sbjct: 191 ILASLTVQMGLFASAALLFLSVLDYLYQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKI 250 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K R +MM+ A ++ITNPTH+A+AL+Y + + DAP +VAKG + +A+K++ I Sbjct: 251 KQKQREMAMSRMMQEVPNADVVITNPTHFAIALKYDEEKQDAPYVVAKGADYVAQKIKYI 310 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E+ + E LAR+L+ Q I S IP F+K VA+++ +Y K Sbjct: 311 AKENEVITVENRPLARALYSQTEIGSTIPEEFFKTVAEILAYVYRTK 357 >gi|312621587|ref|YP_004023200.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor kronotskyensis 2002] gi|312202054|gb|ADQ45381.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor kronotskyensis 2002] Length = 366 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 188/344 (54%), Gaps = 1/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S I + ++ Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFFSN- 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 LEDIS LL+ + ++ ++V+P + M Q ++ +K SF++ Sbjct: 75 LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAAIVEWAQSSFLITGQSLKMSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYCYTQTFAKKLLEMYEMNVFTIVRFSF 194 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A + Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H I I E LAR+L+ + IPP Y+AVA+++ +Y K Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358 >gi|222530120|ref|YP_002574002.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii DSM 6725] gi|222456967|gb|ACM61229.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii DSM 6725] Length = 366 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 189/344 (54%), Gaps = 1/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S I + ++ Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFFSN- 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 LEDIS LL+ + ++ ++V+P + M + Q ++ +K SF++ Sbjct: 75 LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAVIVEWAQSSFLITGQSLKMSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYFYTQTFAKKLLEMYEMNVFTIVRFSF 194 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + Sbjct: 195 GSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIREK 254 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A + Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H I I E LAR+L+ + IPP Y+AVA+++ +Y K Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358 >gi|15615002|ref|NP_243305.1| flagellar biosynthesis protein FlhB [Bacillus halodurans C-125] gi|10175059|dbj|BAB06158.1| flagella-associated protein [Bacillus halodurans C-125] Length = 363 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 179/346 (51%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D+ +G S + + +L ++L F P + L + Sbjct: 14 QEKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLCVFLFLWLFGGPLLGGTLEKLLIHTF 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + L+ +++ A+ +++P + + ++ G+ + IQ P+ +K Sbjct: 74 ESYLLMDVTEESVAELMFEITMEAAIVLLPIMAIALIAGVLASYIQVGPLFTTEPLKMKL 133 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ +G KRI+S+ LV F+KS +KI+L G + + ++ + + Sbjct: 134 SKIDPIKGAKRIFSVRALVEFLKSLLKIVLTGLAAFSIVWFSLEDVMLLSQKSVENSFVT 193 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + I+I + + L++ D + + +++MSKQ++KDE K G+P +K+++K Sbjct: 194 VAQLTALLGILIAILLLILSIPDYLYQRYDHEKQIRMSKQDVKDEHKNVEGDPKVKSKRK 253 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 +MM+ +A ++ITNPTHYA+AL+Y Q++ DAPV+VAKG + +A K++ +A Sbjct: 254 QKQMEMAMQRMMQEVPKADVVITNPTHYAIALKYDQSKMDAPVIVAKGVDYVAFKIKSLA 313 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +HN+ E LAR+L+ Q I +P +KAVA+++ +Y K Sbjct: 314 KQHNVVTVENKPLARALYDQADIGDQVPEQLFKAVAEVLAYVYRLK 359 >gi|320354335|ref|YP_004195674.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM 2032] gi|320122837|gb|ADW18383.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM 2032] Length = 355 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E A +TE+PS+K+ D +G SRE + L++ +FF +P + T Sbjct: 1 MAEEPASGERTESPSAKRRADFRKKGQVAQSREVQTAALFTLLLLFWVFF-APIFWDGTK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ +L + S ++ L L +S + ++ P L+ ++ G + +Q + Sbjct: 60 EMVAVLWRNSGDYAITTSSLMQLGYFLGVSLAMILAPLFLVALLVGFLATFLQIGWLFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G+ R +S +LV +KS +K+ L+G I ++ L Sbjct: 120 EPLIPDLTKLDPIKGMGRFFSKRSLVEVIKSLLKVGLIGWIAYKTVAGEMDQALLLTEMP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + T V+ + + L +LD + + K+KM+KQE K+E+K++ G+P Sbjct: 180 LDDTILYLAKTSALVMAKVAAIMIVLAILDYAFVRWEMEEKMKMTKQEQKEEMKETEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK++ +SI + R +MM A A ++ITNPTH A+A++Y DAP+++AKGQ L+A Sbjct: 240 HIKSKIRSIQQQMARRRMMAAVPTADVVITNPTHIAVAIKYEAGTMDAPLVLAKGQELVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+R+IA E++IP+ E P +AR L +V + AIP +KAVA+++ +Y K Sbjct: 300 EKIREIARENDIPLVENPPVARLLHSKVEVGQAIPEELFKAVAEILAYVYSLK 352 >gi|285018167|ref|YP_003375878.1| flagellar biosynthesis pathway component flhb protein [Xanthomonas albilineans GPE PC73] gi|283473385|emb|CBA15890.1| probable flagellar biosynthesis pathway component flhb protein [Xanthomonas albilineans] Length = 376 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 171/353 (48%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSEN+ +TE P+ K++ + +GN P SRE + + + + L+ + Sbjct: 1 MSENEEGAERTEQPTEKRLRETREQGNIPRSRELATAAVFSSSIFALMGMSGSLTAGAVA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L + +V+P + + + G + L+ + Sbjct: 61 WMKHAL-QPDPHLRDTPQALFGYFGDLLIGLFWVVLPLIGICVAAGFIAPLLMGSLRFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+ R+Y +LV +KS +++ VG + + + + + Sbjct: 120 QALIPKLDRLNPMAGLARLYGTESLVELLKSMLRMGFVGGAAFLCIWKGLDGLRGLLQQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H +L+ +A L +D + + +KLKM+++E++ E+K++ G+P Sbjct: 180 LEQAIGHGLGFTLSMLLYTAGALALLAAIDAPYQKWHYINKLKMTREEVRREMKENDGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y AP ++AKG + IA Sbjct: 240 EVKGRIRQMQMQMSQRRMMEAVPKADVVVVNPTHYAVALKYESGRMRAPTVLAKGVDEIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ +H + + P LAR+L+++ + IP Y AVAQ++ +Y + Sbjct: 300 FRIREVGEQHRVAVVSAPPLARALYREGQLGKEIPVRLYSAVAQILSYVYQLR 352 >gi|149194192|ref|ZP_01871290.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus TB-2] gi|149136145|gb|EDM24623.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus TB-2] Length = 351 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ KK+E+A EGN S E S F +L I +LF+ + + Sbjct: 1 MADD---LEKTEEPTPKKLEEAKKEGNIAKSMEVSGFVVLLVGSIIILFYLKYVTFYLEE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++I L+ + L+ P + ++ GI ++Q + + Sbjct: 58 YFRYFYSYIGVELTKNI--FFNLIIKSTYYFFILIAPIFIALILAGIIGNVMQFGFLFTI 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++++ +G+KR++S+ LV +K+ +K + + + N Sbjct: 116 KPILPKLEKINPIKGLKRLFSVKTLVEGLKTTLKTFIAFLVGFTLFYNFLQEIPRLELMN 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L ++D + + + L+MSKQEIKDE KQ+ GNP Sbjct: 176 FFEQLKWFEDKAVILIFSLLGVFFIFAIIDFTYQKYTYKKSLRMSKQEIKDEYKQTEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + +MM +A ++ITNPTHYA+A+RY +T+++AP +VAKG + +A Sbjct: 236 EVKAKIRQLQREMAKKRMMAEVPKADVVITNPTHYAVAIRYDKTKDEAPRVVAKGVDNLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA E + I E P LAR L+K V + IP +KAVA+++ +Y K Sbjct: 296 IKIKEIAREAGVMIVENPPLARELYKSVEVGEIIPQKLFKAVAEVLAYVYRAK 348 >gi|222053619|ref|YP_002535981.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32] gi|221562908|gb|ACM18880.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32] Length = 354 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 191/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D +KTE P++KK+ +A +GN P SR+ + S+ + +I L + S Sbjct: 1 MSEED-KHSKTEQPTNKKVSEAKEKGNIPRSRDLTSTLSLTSGIIALYVTGGFMASKLKS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + AS + ++ + I L+ L L+ + ++ P LL+ ++ + + + Q + Sbjct: 60 SSAEIFASLSTKEFTEAG-IYMLMLKLFLTMTLVLAPFLLIVIVASLAAEVSQGGISTSF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +++ GIKR+++ + +V +KSF+KII+VG + + + +++ + + Sbjct: 119 EKIGFDLDKLNPVHGIKRLFNKDAVVEMLKSFLKIIIVGYMAYKVMRDEVDSVIYLVDMD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +I K++I + L VLD+ + ++ LKM+KQE+KDE K + G+P Sbjct: 179 IPAIAEFVSHISFKLVIHTCGVLFILAVLDLAFVKWRFIENLKMTKQEVKDENKDAEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + K + R +M A +++TNPTH+A+AL+Y + + APV++AKG + +A Sbjct: 239 HIKGKIKQKQYDQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGADFLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++IA E NI + E LAR LF QV IP Y AVA+++ +Y K Sbjct: 299 QKIKEIARESNITLVENRPLARELFAQVKEGEEIPEALYAAVAEILAYVYKLK 351 >gi|251797425|ref|YP_003012156.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] gi|247545051|gb|ACT02070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] Length = 365 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 179/347 (51%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK ++A +G S + +L S + S L Sbjct: 14 SQEKTEKATPKKTQEARKKGQIAKSNDLPSSMILLFTFATFAALGSYYKTRIMSVFQELF 73 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + ++I+ L L++ + P + ++ I ++Q +L +KP Sbjct: 74 DNWLTMDV-TTANIMPLFDKLAVDMLMFLAPIFAIVVIVAILGNVVQFGFLLTGESLKPK 132 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F +++ G K+I+S+ +V F+KS +K++++G ++ ++ ++ +L S + I Sbjct: 133 FSKLNPINGFKQIFSMRTVVEFLKSILKLLIIGILVYRAIWSDWDKILVLSSLSVQQIFS 192 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 K+ + + L D + ++ L+MSKQ+IKDE K+S G+P+IK + Sbjct: 193 FTAGLTVKLGLETGAVLVILAFADYMYQRYEHAKSLRMSKQDIKDEYKKSEGDPLIKGKI 252 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A ++ITNPTH+A+AL+Y ++ +AP+++AKG + +A ++R++ Sbjct: 253 RERQRRMAMQRMMQEVPKADVVITNPTHFAIALQYDASKMEAPLIIAKGMDHLALRIREV 312 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH + + E LAR+L+++ I +IP ++AVA+++ +Y K Sbjct: 313 AKEHGVVMMENKPLARALYERADIGDSIPADLFQAVAEVLAAVYKMK 359 >gi|306820134|ref|ZP_07453782.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551912|gb|EFM39855.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 379 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 109/345 (31%), Positives = 182/345 (52%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KK ED +GN SRE + +S+ A + + F + + + Sbjct: 27 EKTEEATPKKKEDTRKKGNVLQSRELTGAASLFAAVFAINTFSKEILKVIVDAWNYYTGM 86 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 +L + L T L + + ++ ++ ++ Q + ++P + Sbjct: 87 LNSFELTNQMQAYKLFTTLLIFCVKAMLFIIIPVVLVAFLVQKAQVGNIFTAETIRPKLE 146 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R+S+ G KR++S+ + V +KS +KI+LVG + + +N ++ S N Y Sbjct: 147 RISILSGFKRMFSMQSTVTLIKSLLKIMLVGYVGYAYIKDNMPLVMKSFSLNDKQFSYML 206 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F + + ++ I L + D + H + ++MSKQEIKDE KQS G+P IK++ K Sbjct: 207 FHFSINMALRMVYVIIALGIFDYVYQRHSYNKNIRMSKQEIKDEYKQSEGDPQIKSKIKE 266 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R +MM+ +A +IITNPTH+A+AL+Y + + DAP +VAKGQ+ IAKK+R+ A Sbjct: 267 RQRQSAMRRMMQDLPKADVIITNPTHFAVALKYDEDKYDAPYVVAKGQDFIAKKIREKAK 326 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E +IPI E LAR+L+ ++ I S I P Y+AVA+++ I+ K Sbjct: 327 ELDIPIVENKPLARALYSEIDIGSVITPQLYEAVAEVLAYIFSLK 371 >gi|332305672|ref|YP_004433523.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173001|gb|AEE22255.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica 4H-3-7+YE-5] Length = 374 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 171/353 (48%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + KTE P+SKKI D+ +G S+E S ++ + ++ Sbjct: 1 MSDAN---EKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSAAAFIMMGGQIAKAIYL 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D +H+ + + V+ +++ GI + Sbjct: 58 VTQRTF-TLSRDETYDFTHMFQAWGSAIETVAGPVMLYMVIITAAGIYGNIALGGYNFTW 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ +N LV +K+ K+I+V + I++ L Sbjct: 117 QGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVVMGMAYIAMLVFKDEALHLDLEL 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L+HA + +M+ + + D+ + ++ ++KMSKQE+KDE K + G+P Sbjct: 177 YPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKDENKNAEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +KNR + + ++MM+ A +++TNPTHY++AL+Y Q APVLVAKG + +A Sbjct: 237 QVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVLVAKGVDEMA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RKIA H +PI P LAR+++ + S IP + AVAQ++ ++ K Sbjct: 297 MHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPTQLFMAVAQILAYVFQLK 349 >gi|255021385|ref|ZP_05293433.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] gi|254969248|gb|EET26762.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] Length = 375 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 191/354 (53%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + +TEA + KK EDA +G P SRE S + + LL+ I ++ + Sbjct: 1 MAEEQS-QERTEAATPKKREDARKKGQVPRSRELSTSALL-LLSASLLYGLGSEIQTMAT 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D T + + ++ L ++ A V+P L M+ + + + + Sbjct: 59 DFLRAGLRLTPAVMSNHQDLLRHLVQMAGLALSDVLPLWLALMLVVVLASIALGGWNFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F + EGI+R++S + +K+ +K ++VG I + +L I + Sbjct: 119 KTLIPNFSHLDPIEGIQRLFSRRGFLELVKAALKTLVVGGIGVTVIWAQRGELLGLIQIS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P S + V +++ + + + D+ + + KLKMS+Q+IKDE+K+ GNP Sbjct: 179 PKSAMVSLLSMSGLVFLIMAVGTLLIVLFDVPFQLWSFNEKLKMSRQDIKDEMKEMDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + +S+ R R +MM A A++++TNPTHYA+ALRY+++EN APV++AKG +A Sbjct: 239 QIKTKVRSMQREMARRRMMAAIPSASVVVTNPTHYAVALRYVESENRAPVVLAKGAGNVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 ++R++A EH +P+ E P LAR+L+ V + IP + Y+AVA+++ ++ ++ Sbjct: 299 LRIRELAQEHGVPLVEAPPLARALYHHVELEQEIPALLYRAVAEVLAYLHQLRL 352 >gi|109899339|ref|YP_662594.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica T6c] gi|109701620|gb|ABG41540.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica T6c] Length = 374 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 171/353 (48%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + KTE P+SKKI D+ +G S+E S ++ + ++ Sbjct: 1 MSDAN---EKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSAAAFIMMGGQIAKAIYL 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D +H+ + + V+ +++ GI + Sbjct: 58 VTQRTF-TLSRDETYDFTHMFQAWGSAIETVATPVMLYMVIITAAGIYGNIALGGYNFTW 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P +++ G KR++ +N LV +K+ K+I+V + +++ L Sbjct: 117 QGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVVMGMAYVAMLVFKDEALHLDLEL 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L+HA + +M+ + + D+ + ++ ++KMSKQE+KDE K + G+P Sbjct: 177 YPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKDENKNAEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +KNR + + ++MM+ A +++TNPTHY++AL+Y Q APVLVAKG + +A Sbjct: 237 QVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVLVAKGVDEMA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RKIA H +PI P LAR+++ + S IP + AVAQ++ ++ K Sbjct: 297 MHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPAKLFMAVAQILAYVFQLK 349 >gi|320177760|gb|EFW52748.1| Flagellar biosynthesis protein FlhB [Shigella boydii ATCC 9905] Length = 383 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 95/335 (28%), Positives = 177/335 (52%), Gaps = 1/335 (0%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 +E A EG P SRE + +L + + F ++ L L + D + Sbjct: 18 LEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLSAGL-HFDHSIINDPN 76 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 I+ + L A ++P + ++ + S ++ V + ++P F +++ GIKR Sbjct: 77 LILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKR 136 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A V ++ Sbjct: 137 MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 196 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 ++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + + R+ R +M Sbjct: 197 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 256 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 M +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+N+P E P Sbjct: 257 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 316 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L++ I IP Y AVA+++ ++ K Sbjct: 317 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351 >gi|209964223|ref|YP_002297138.1| flagellar biosynthesis protein FlhB [Rhodospirillum centenum SW] gi|209957689|gb|ACI98325.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW] Length = 359 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 197/354 (55%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ D+KTE P+ KK+ DA +G S E + + L+ +L + Sbjct: 1 MAEDQDQDSKTEEPTDKKLSDAREKGQVAKSMEVGNLFILASGLVMVLLLLPWSGRILWD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + L + + +LT L+L + + P L+L ++ + + +IQ + + Sbjct: 61 AMMPFVERP-HAILMAPAALGDVLTDLTLDIAFALAPTLVLLLLAALAAPIIQVGLMFSA 119 Query: 121 NHV-KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +V K +V+ G+K S+ NLV F+KS K++LVG ++++ L + ++ F++ Sbjct: 120 ENVFKFDLNKVNPLTGLKNKVSLKNLVEFLKSLGKLVLVGIVVSVLLLPLWTSIEHFLAL 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 S++ K++ +++ + + D + +Q+ +++M+KQE+KDE KQ+ G+ Sbjct: 180 PLPSVIVETRHEAAKLIAAVVIVLGAIAGADYAFQRYQFMQQMRMTKQEVKDEYKQTEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK++ + + R R++MM A A +++TNPTH+A+AL+Y + AP +VAKG +LI Sbjct: 240 PLIKSKIRQLRMQRSRNRMMAAVPSADVVVTNPTHFAVALKYDASAMSAPRVVAKGADLI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 AK++R++A E +P+ P LAR+LF I+ IP YKAVAQ+I ++ K Sbjct: 300 AKRIRELAEEAGVPVISNPPLARALFATAEIDEEIPAEHYKAVAQVISYVFKLK 353 >gi|229918645|ref|YP_002887291.1| flagellar biosynthesis protein FlhB [Exiguobacterium sp. AT1b] gi|229470074|gb|ACQ71846.1| flagellar biosynthetic protein FlhB [Exiguobacterium sp. AT1b] Length = 364 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 177/346 (51%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ED+ +G S + + ++ A + L FF + + + LL Sbjct: 17 GEKTEKATPRKREDSRKKGQVAKSADLTGAFALFAMFLMLSFFGPVIGQQLLTLISDLL- 75 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 S + ++ L L ++ P ++ ++FGI +Q + +L ++P Sbjct: 76 SPEYLLFNVTGGMSDMVVDLMLRVGLILAPFFIVAVVFGILINYLQIGTLFSLEAIQPKL 135 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R+ +G+KRI S+ +V F+KS K++++ T L +N + + Sbjct: 136 ERIDPIKGVKRIVSMKAVVEFLKSLFKLLIILTTAVAVLWKNQKELSRMAVEQVRESIVA 195 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 ++ + + + + L LD + + ++MSKQ+IKDE K + G+P+IK++ K Sbjct: 196 LASITIELGLWVSVALLALAFLDFFYQRFDFEKSIRMSKQDIKDEYKNTEGDPLIKSKIK 255 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+ +RY T++ AP++VAKG + +A +R +A Sbjct: 256 QQQREMAMRRMMQEIPNADVVITNPTHYAVVIRYDDTKDFAPLVVAKGVDRVAFHIRDVA 315 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ I E LAR+L+ Q+ I + FY+A+A+++ +Y K Sbjct: 316 KEHDVAIVENKPLARALYAQIDIGEVVDESFYQAIAEVLAFVYQMK 361 >gi|77165624|ref|YP_344149.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC 19707] gi|254433995|ref|ZP_05047503.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27] gi|76883938|gb|ABA58619.1| Flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC 19707] gi|207090328|gb|EDZ67599.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27] Length = 377 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ A +TE P+ K+ E+A +G P SRE S +L+ + L+ P + + Sbjct: 1 MADSSA-QERTEQPTPKRQEEARKKGQVPRSRELSTTVLLLSSALGLVLIGEPLLQGLAD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ + + A +++ P L L ++ + + L+ + Sbjct: 60 LMRQGL-QLERAQIFEPKAAILQFQQGVGEAVKIITPFLALTLIAALAAPLLMGGWSFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +++++ +G+KRI+ + +K+ +K +L+ + + ++ Sbjct: 119 QSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVGCLLFWLFSPDLIALGRQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ + L+ + +A + V+D + +LKM++QE+K+E K++ GNP Sbjct: 179 FVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQGWNHTRQLKMTRQEVKEEHKETDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +MM A +A +++ NPTHYA+AL Y Q + AP +VAKG + +A Sbjct: 239 ELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQGAPRVVAKGVDQVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R +A +N+P+ P+L+R+++ ++ IP Y+AVAQ++ + + Sbjct: 299 IKIRTVAAGNNVPVLSAPALSRAIYHSTKLDQEIPAGLYRAVAQVLAYVLQLR 351 >gi|291562038|emb|CBL40854.1| flagellar biosynthetic protein FlhB [butyrate-producing bacterium SS3/4] Length = 357 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 189/348 (54%), Gaps = 2/348 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + KTE P++KK DA EGN SR+ + ILA + + + + P IY + Sbjct: 3 QSGQEKTEQPTAKKRRDARKEGNIFQSRDVAT-VVILAGIFFGIRIWLPFIYGQMKNYMT 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + R ED+ + LS+ + +P LLL ++ GI ++ +Q ++ ++ Sbjct: 62 WVIDGAARSSEDMLSASLVFVTLSV-FLKCALPLLLLALLLGIVAHGVQTRFNVSFKSIR 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P + R++ GIKR++S+ N V +K+ +KI L+ ++ L ++ M I NP + Sbjct: 121 PKWNRLNPLSGIKRLFSMKNAVELVKNSIKITLLLVLLYNILKQDLQPMASMIDMNPAAS 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + +LI + + + D + ++ +L+M+KQE+KDE KQ+ GNP IKN Sbjct: 181 AAYMMKMIFDLLIRVCIAFMVIAFGDYLYQRWEYEKELRMTKQEVKDEYKQTEGNPEIKN 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R KS+ R +MM+ +A +II NPTH A+AL+Y ++APV++AKG + +A ++ Sbjct: 241 RIKSLQRQMASSRMMQKVPQADVIIRNPTHVAIALKYDPDHDNAPVVLAKGLDELALRIV 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+ E+N+ E LAR+++ ++ IP FY AVA+++ +Y + Sbjct: 301 KVGEENNVYTIENKPLARAMYNSCELDRPIPSEFYTAVAEILVYLYKQ 348 >gi|166712016|ref|ZP_02243223.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 376 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 179/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDGAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S E+ + +L L +++P + + + G+ L+ + Sbjct: 60 AWMKTALSPDPTMRENPMALFGHFGNLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|83858790|ref|ZP_00952312.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] gi|83853613|gb|EAP91465.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633] Length = 358 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 106/350 (30%), Positives = 178/350 (50%), Gaps = 1/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ +K+ A EG+ P S+E S + ++ A L L F + ++ Sbjct: 1 MAEGEDKSEKTEEPTDRKLRQAREEGDVPKSQEVSGWFTLTAGLAMLAFLAPGMVTNLAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L V LA + + D + V L ++ +V ++ I L+Q + Sbjct: 61 MLLVFLAQPHELAV-DPTGAVTLAAATAMRLVLVVGLAFATLLVAAIFGNLVQTGVMFTP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G+ R++ +NF K K+ +VG I L + Sbjct: 120 KKIAPKLDKLDPIKGLTRMFGPEGWMNFFKGVGKMTIVGLAIAAVLWPRRNELAVLPGVA 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P IL + +++I L+ + VLD + Q+ + KMS++EI+DE+K + G+P Sbjct: 180 PIGILQEVYSAAIQLMIAALIAYTAIAVLDFLFQRKQYIDRHKMSRKEIRDEMKDTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +I+ + + I + R + +MM A ++ITNPTHYA+AL Y Q AP+ VAKG + +A Sbjct: 240 MIRAKLRQIRQERAQRRMMARVPDAAVVITNPTHYAVALEYEQGRTPAPICVAKGTDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R +A EH+IPI E+P LAR LF V + IPP + AVA++I + Sbjct: 300 LRIRALAEEHDIPIVEDPPLARGLFASVELEEVIPPEHFTAVAKIIGYVL 349 >gi|332981452|ref|YP_004462893.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1 BON] gi|332699130|gb|AEE96071.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1 BON] Length = 361 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 175/348 (50%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D KTE P+ K+ +A +G S E ++ + +LA + + F + +T+ + Sbjct: 11 ADDEKTEQPTPKRRREAREKGQVFKSAEINMVAVLLASFLVIKAIFPSLLQILTAYERQI 70 Query: 66 LASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A + ++ L + + + + + + GI + Q V + + Sbjct: 71 YTMAGSADSIYTSENLSTLFINTIIQIGKGLWIFIFGICIIGIAVNIAQVGFVFSAKPLA 130 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 ++ G KRI+S + +KS +KI ++G + + + L + Sbjct: 131 MDLGHLNPAAGFKRIFSKRAVNELVKSILKIAIIGYVAYTEIRNDINIFLAMSREGTSVM 190 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 +Y V I + +AT+ VLD + ++ L+MSKQE+K E K++ G+P IK Sbjct: 191 IYDMVSIVLNAAIKLTAVMATVAVLDYIFQRREYERNLRMSKQEVKQEFKETEGDPQIKA 250 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + I R +MM+ +A ++ITNPTH+A+ALRY + APV++AKG + +A++++ Sbjct: 251 RIRQIQRQLAMMRMMQQVPKADVVITNPTHFAVALRYDAETDQAPVILAKGVDYMAQRIK 310 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++A + +PI E LAR+L+ V I IPP FY+AVA+++ +Y+ Sbjct: 311 EVARQSRVPIVENRELARNLYYAVDIGQIIPPQFYEAVAEVLAYVYNM 358 >gi|218133682|ref|ZP_03462486.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC 43243] gi|217991057|gb|EEC57063.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC 43243] Length = 386 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 94/358 (26%), Positives = 182/358 (50%), Gaps = 7/358 (1%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS- 60 +++ KTE P++KK+ DA EG S+E +LA + + F+ + Sbjct: 20 AKDGPGGEKTEVPTAKKLNDARKEGQVAKSKEIITALMLLALFVVIKFYIGNLGQQMIEC 79 Query: 61 -----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 DL + S ++ + + + L+ + +++P + L ++ I +Q+ Sbjct: 80 FSEFYDLFGKIISNSEYGMRMVDATGVVSLGLT-TVLNMIVPFIALAVVIAILGNALQQK 138 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 ++ ++P ++S G+KR++++ L KS I ++ +I ++ + + Sbjct: 139 WMVTTKPLQPKLSKISPISGLKRMFNVKQLFEVGKSVAMIAVMSYVIYTTVKDKLGVLYT 198 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 F + + + L + + I I + +D+ + H++ +KM+KQE+KDE K Sbjct: 199 FYNISLYEALEIVGDIIVDLGIKISAVFLVIGFVDLIYQRHKFKEDMKMTKQEVKDEFKN 258 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P +K + + + R +MMEA +A ++ITNPTH+A+AL+Y + APV++AKG Sbjct: 259 TEGDPQVKGQIRRRMQQVSRRRMMEALPQADVVITNPTHFAVALKYEANKGQAPVVIAKG 318 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A ++ A E+ I I E LAR L+ V I + IPP Y+AVA+++ +Y K Sbjct: 319 ADYLAFDIKAKAKEYGIEIVENKPLARILYNNVEIGAQIPPELYQAVAEVLAFVYSLK 376 >gi|39936944|ref|NP_949220.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris CGA009] gi|192292772|ref|YP_001993377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris TIE-1] gi|39650801|emb|CAE29324.1| putative flagellar biosynthetic protein flhB [Rhodopseudomonas palustris CGA009] gi|192286521|gb|ACF02902.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris TIE-1] Length = 357 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 193/353 (54%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ D KTE P+ K+++DAL G+ S+E + + I + L F + + Sbjct: 1 MSED--SDEKTEEPTQKRLDDALKRGDVVKSQEVNTWFLIAGATLVLSSFHESIGTGILA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+ + ++ D ++ L LS + + LL+ ++ I S +IQ V + Sbjct: 59 PMRNLIEKSWMLRV-DGDGLIALAKSLSYATLAAIGIPLLMLVIVAIASNMIQHRLVFSA 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S EG KR++ + NF+K KI+ +G ++ L + + + + Sbjct: 118 EALTPKFSKLSPLEGAKRLFGKQAMANFLKGLFKIVALGIVMVAVLYPEHDRLDALLKMD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L K+L ++ +A + V D + Y QW+ K KMS QEIK+E KQS G+P Sbjct: 178 VSALLGVTVALTLKLLGAVVAMLAFVAVGDYFFQYRQWHEKQKMSLQEIKEEFKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R++ +MM A+++ITNPTH+++AL+Y + AP+ VAKG + +A Sbjct: 238 HIKGRLRQLRYQRMKKRMMAEVPNASVVITNPTHFSVALKYERG-MSAPICVAKGVDAVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH++PI E LAR+L+ V I+ IP Y+AVA++I + + K Sbjct: 297 FKIREVAKEHDVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVIGYVMNLK 349 >gi|188576802|ref|YP_001913731.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576995|ref|YP_001913924.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521254|gb|ACD59199.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521447|gb|ACD59392.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 376 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDGAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S E+ + L L +++P + + + G+ L+ + Sbjct: 60 AWMETALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y + Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|153001439|ref|YP_001367120.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS185] gi|304409946|ref|ZP_07391565.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|307302341|ref|ZP_07582099.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] gi|151366057|gb|ABS09057.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS185] gi|304351355|gb|EFM15754.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|306914379|gb|EFN44800.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] Length = 376 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 164/340 (48%), Gaps = 1/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+ +++E A +G S+E + +++ + P + + + + + + + + Sbjct: 13 PTGRRLEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + D + + ++ + + +LL ++ + + + P ++S Sbjct: 72 IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G KR++ + LV K K +V + L+ + ++ S + +YHA + Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 + I++ I + V+D+ + +LKM+KQE+KDE K + G P +K+R + + Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKSRVRQMQHEL 251 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + +MM A +I+ NP H+A+A++Y + AP ++AKG + +A K+R+IA H+I Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIARAHDIA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I P LAR+++ ++ IP + AVAQ++ ++ + Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351 >gi|259907600|ref|YP_002647956.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96] gi|224963222|emb|CAX54706.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96] gi|283477442|emb|CAY73358.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163] Length = 381 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS ++ + KTEAP+ +I A EG P S+E + +L +L + S+ S Sbjct: 1 MS-QESDNEKTEAPTPSRIAKAREEGQIPRSKELTTLLMLLVGWGLMLCSGGNLVRSLQS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH + + + D + ++ + L A + ++P + ++ + + + +L+ Sbjct: 60 LLHNAMI-FDRLLILDPAQMLQRSSSLLGQAFKAIMPFVFGLLLTAVSAPPLIGGLILSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K+++ GIKR++S +K+ +K++L + L N + I Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ G+P Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG L+A Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y + Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351 >gi|26991041|ref|NP_746466.1| flagellar biosynthesis protein FlhB [Pseudomonas putida KT2440] gi|24986073|gb|AAN69930.1|AE016632_1 flagellar biosynthetic protein FlhB [Pseudomonas putida KT2440] Length = 380 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ + Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + S T+ + D + L A V P L+L + + + + + Sbjct: 61 -LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVVSFVAPIALSGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S+ L +K+ K ++ + + L+ + +L + Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + D+ + +Q + K+KM+KQE++DE K S G P Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + + Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+I EHNI I E P+LAR+++ + IP Y AVAQ++ ++ + Sbjct: 300 ALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIR 353 >gi|84624133|ref|YP_451505.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898983|ref|YP_201256.2| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae KACC10331] gi|6969591|gb|AAF33828.1|AF226282_2 flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae] gi|84368073|dbj|BAE69231.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 376 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDGAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S E+ + L L +++P + + + G+ L+ + Sbjct: 60 AWMKTALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ + IP Y VAQ++ +Y + Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|288553046|ref|YP_003424981.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4] gi|288544206|gb|ADC48089.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4] Length = 363 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 177/346 (51%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + KK +D+ +G S + + +L ++L FF I S DL + Sbjct: 13 DEKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLLVFLFLWFFGGAIIGSTLMDLMKHVF 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + A+ +++P +L+ M+ G+ + IQ P+ + +K Sbjct: 73 QTYLLMDVTPRSFEAMFKEIVMEAAVVLLPIMLVAMVAGVAASYIQVGPLFTTDPLKMKL 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ +G KRI+S+ +V +KS +KI G ++ + L N +L Y Sbjct: 133 SKIDPIKGFKRIFSVRAIVELLKSLLKIAFAGVVVFVILWFNLEDVLLLSQKAVADGFYV 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + + + L++ D + + ++KMSK++IKDE K G+P IK+++K Sbjct: 193 IAQLTALMGVAVAVLLLFLSIPDYLYQKYDHEKQIKMSKKDIKDEHKNMEGDPRIKSKRK 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 +MM+ A ++ITNPTHYA+AL+Y + + DAP++VAKG + +A+K++ IA Sbjct: 253 QKQMEMAMQRMMQEVPNADVVITNPTHYAIALKYDEEKADAPIIVAKGVDYVAQKIKGIA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ + E LAR+L+ I +P +KAVA+++ +Y K Sbjct: 313 SEHDVVLVENKPLARALYANADIGEQVPEDMFKAVAEVLAYVYRLK 358 >gi|313497812|gb|ADR59178.1| FlhB [Pseudomonas putida BIRD-1] Length = 380 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ + Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + S T+ + D + L A V P L+L + + + + + Sbjct: 61 -LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S+ L +K+ K ++ + + L+ + +L + Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + D+ + +Q + K+KM+KQE++DE K S G P Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + + Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+I EHNI I E P+LAR+++ + IP Y AVAQ++ ++ + Sbjct: 300 ALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIR 353 >gi|238025868|ref|YP_002910099.1| flagellar biosynthesis protein FlhB [Burkholderia glumae BGR1] gi|124695889|gb|ABN14283.1| FlhB [Burkholderia glumae BGR1] gi|237875062|gb|ACR27395.1| FlhB [Burkholderia glumae BGR1] Length = 408 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE + ++ E A EG SRE + F+ + A P + + Sbjct: 1 MAE-DSDLEKTEDATPRRREKAREEGQVARSREFASFALLAAGFYGAWLLSGPIGEHLRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + D ++ + + P L L + + + + +L+ Sbjct: 60 MLRGSL-TFDRASAFDTHQMLTGAGRAGMEGLSAIAPVLALTGLAALAAPIALGGWLLST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R+ G+ RI+S ++ + K ++VG I I++ ++ ML ++ Sbjct: 119 KAIGFKFDRLDPISGLGRIFSPQGVIQLGMALAKTVIVGGIGGIAIWRSHDEMLGLLNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L V M + + + +D+ + Q+ KL+M+K+E+K E ++S G+P Sbjct: 179 LHEALAGTLHLVAVCCGMTVAGMLVVAGMDVPYQIWQYNKKLRMTKEEVKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +++TNPTH+A+ALRY E AP ++AKG NL+A Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRAPKVIAKGVNLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH +PI E P LAR+L+ V + IP Y AVA+++ +Y K Sbjct: 299 LRIRELAEEHRVPILEAPPLARALYHNVDLEREIPGSLYSAVAEVLAWVYQLK 351 >gi|52080241|ref|YP_079032.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC 14580] gi|52785618|ref|YP_091447.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC 14580] gi|319645980|ref|ZP_08000210.1| FlhB protein [Bacillus sp. BT1B_CT2] gi|52003452|gb|AAU23394.1| flagella-associated protein [Bacillus licheniformis ATCC 14580] gi|52348120|gb|AAU40754.1| FlhB [Bacillus licheniformis ATCC 14580] gi|317391730|gb|EFV72527.1| FlhB protein [Bacillus sp. BT1B_CT2] Length = 359 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 185/346 (53%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK ++ +G S + + ++L + LF + + Sbjct: 12 GEKTEKATPKKRRESRKKGQVAKSADVNTAVTLLIVFLSFLFIGPFMRDRLLGLIEKYYK 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 K+ +++I L + L + ++ P LL ++ G+ S +Q + +KP Sbjct: 72 ELITMKVS-VANIPGLFQSVVLESGLIMAPLLLTAVVSGVLSNYMQVGFLFAPEAIKPDL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K++ G KRIYSI +V +KS +KI++VG + L N+ +L + + L + Sbjct: 131 KKLDPLNGFKRIYSIRAIVELLKSILKIVIVGGVTFAVLWLNFDKILRIPALSAGEALSY 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + + + L VLD + + ++MSKQ+IKDE K++ G+P+IK++ K Sbjct: 191 VGWLTFLMGVSAAVALIFLAVLDYLYQKFDYEKNIRMSKQDIKDEYKKTEGDPLIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + +MM+ +A +IITNPTHYA+AL+Y + + DAP ++AKG +L+A K+R+IA Sbjct: 251 QKQKEMAMRRMMQEVPKADVIITNPTHYAVALKYDENKMDAPFIIAKGVDLMALKIRQIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LAR+L+ QV I+ A+P F+KAVA+++ +Y K Sbjct: 311 KEHDVMTVENRPLARALYDQVEIDQAVPEEFFKAVAEILAYVYKTK 356 >gi|325981881|ref|YP_004294283.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212] gi|325531400|gb|ADZ26121.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212] Length = 379 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 189/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ +TE + +++E A EG S+E + F+ ++A + +L S + + Sbjct: 1 MSE-ESDLERTEEATPRRLEKAREEGQVVRSQELTSFTLLMAAAVGILMLGSALMEKLVK 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + ++ ++ + P L L ++ + ++ +++ Sbjct: 60 IMQSGM-QLDRELAFQSELMINRFYEFAIEGLISMAPLLFLLLVVAFFAPMLLSGWLVSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P FKR+ +G RI+S+ +L+ +K+ +K IL+G + + + N +++ ++ + Sbjct: 119 KAVIPDFKRIDPIKGFGRIFSMRSLIELVKAILKTILIGGVAALVIWHNKDSVMALLTVS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++I+ + + +D+ + + +L+M+K++++ E K+S G+P Sbjct: 179 IDLGISRTGDFLAMSFLLIISAMIIIVAVDVPFQIWEHAKQLRMTKEDVRKEYKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +++ R R +MM +A +I+TNPTHYA+ALRY Q+ AP +VAKG +L+A Sbjct: 239 YVKARIRNLQREAARRRMMSEIPKADVIVTNPTHYAVALRY-QSNMRAPKVVAKGVHLLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA EH IPI E P LAR+L+ + S IP Y AVA+++ ++ + Sbjct: 298 ARIREIATEHRIPILEAPPLARALYHHTELESEIPEKLYTAVAEVLAYVFQLR 350 >gi|167464149|ref|ZP_02329238.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 363 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK E+A +G S E + + LL F + + L Sbjct: 14 SGEKTEKATPKKREEAKKKGQVAKSMEIPASLILFFTFLGLLLFSGFMKDRLLGLVTYTL 73 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + ++++ + HL A L+ P ++ ++ + Q + +K Sbjct: 74 EHDLVMNV-TLNNVQMMFLHLIGEAFLLLAPIFIISVVIAFFANYAQIGFLFTGEPLKMK 132 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F +++ EG KRI+S+ +++F+KS +K+I++ I+ +++ ++ +L Sbjct: 133 FNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQDMLP 192 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++ + I + + LD + ++ L+MSKQEIKDE K+S G+P+IK + Sbjct: 193 YIGSLTVQLGLKIGGVLIAIAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPLIKGKI 252 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R +MM+ +A +IITNPTH+A+ALRY E +AP ++AKG +LIA K++++ Sbjct: 253 RERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIALKIKEV 312 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E+ + I E LAR+L+ QV I AIP ++AVA+++ +Y K Sbjct: 313 AKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 359 >gi|149908444|ref|ZP_01897107.1| flagellar biosynthesis protein [Moritella sp. PE36] gi|149808607|gb|EDM68542.1| flagellar biosynthesis protein [Moritella sp. PE36] Length = 376 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 182/356 (51%), Gaps = 8/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +TE + KK+ A +G S+E + + A L F ++ Sbjct: 1 MAEKD-GQEQTEDATEKKLTQAREKGQVVRSKELATTFVLTATGAAFLAFGD----ALAR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM---FGIGSYLIQRIPV 117 L + + S Q + EDI LL +S+S L P + ++ GI ++ V Sbjct: 56 ALVINMTSLFQLEREDIFSPDALLEIVSVSIKPLFWPMFGIMIVGFFAGIIGNILMGGMV 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + ++P ++S + G+KR+ +V +KS K+ +V TI + L + +++F Sbjct: 116 FSGESIRPKASKMSPKAGLKRMMGPQAMVELIKSIAKVAVVVTIALLVLKVQFLQIMEFS 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + + + V I + + + +D+ + Y + +L+M+KQE+KDE+K Sbjct: 176 LQPLNISIIQSLNFLTDVFIWLCASLIIIVAIDVPYQYWKHAKELRMTKQEVKDEMKDVN 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K + + + + +MM A +IITNPTHY++AL+Y ++ N AP +VAKG + Sbjct: 236 GNPQLKGKIRQMQMEISQRRMMGDVPDADVIITNPTHYSVALKYEKSGNAAPKVVAKGVD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R++A EH +PI E +L R+++ I+ IP + AVAQ++ +Y + Sbjct: 296 QVAFRIREMAKEHKVPILESAALTRAIYHSTEIDDPIPEGLFIAVAQILAYVYQLE 351 >gi|90418395|ref|ZP_01226307.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans SI85-9A1] gi|90338067|gb|EAS51718.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans SI85-9A1] Length = 362 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 126/352 (35%), Positives = 207/352 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+++ +KTE P+ KKI DA+ +GN P+SREA + +S+LA + ++ G+ + Sbjct: 1 MSDSEDKSSKTEFPTEKKISDAVEKGNLPVSREAPILASLLAIMAFIALQAREGVQRLLL 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + Q L+ + + +L L+ A ++P LF+ G+ S ++Q P +N+ Sbjct: 61 SLQTTFENPLQWDLDTSADALHVLHMLAREAVWFILPAAGLFVAGGVISSVLQNPPQINI 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P + VS G RI+ + L F K+ K I +G ++++ L ++ TM+ + A+ Sbjct: 121 ERIRPKWSNVSPASGFTRIFGLRGLTEFGKAVFKFITIGVVVSMLLVSSFPTMMQAMFAD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + K+L I + L D+ + W L MSKQEIKDE KQ+ G+P Sbjct: 181 PVLVPELILQMAMKLLSGISIATIVLVAADLAMTRFHWRRDLMMSKQEIKDENKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK RQ+ I R R+R +MM AT++I NPTHYA+ALRY + E AP++VAKG +L+A Sbjct: 241 QIKARQRQIGRDRVRRRMMADVPLATLVIANPTHYAIALRYNREEGGAPMVVAKGADLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA +++P+ E+ LARS++ V I+ IPP F+KA+A++IY ++ + Sbjct: 301 LKIREIAEANDVPVIEDKLLARSMYDHVEIDQMIPPKFFKAIAEIIYFLHSR 352 >gi|300113616|ref|YP_003760191.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113] gi|299539553|gb|ADJ27870.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113] Length = 377 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + +TE P++K+ EDA +G P SRE S +L+ + L+ + + Sbjct: 1 MADS-SAQERTEQPTAKRQEDARKKGQVPRSRELSTTVLLLSSALGLVLVGESLLQGLAD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ + ++ A +++ P L L ++ + + L+ ++ Sbjct: 60 LMRQGL-QLERAQIFEPKAVILQFQWGVGEAVKIITPFLALTLIAALAAPLLMGGWSVSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +++++ +G+KRI+ + +K+ +K +L+ + + ++ Sbjct: 119 QSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVACLLFWLFSSDLMALGRQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ + L+ + +A + V+D + +LKM++QE+K+E K++ GNP Sbjct: 179 FVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQSWNHIRQLKMTRQEVKEEHKETDGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +MM A +A +++ NPTHYA+AL Y Q + AP +VAKG + +A Sbjct: 239 ELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQGAPRVVAKGVDQVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R +A +N+P+ P+L+R+++ ++ IP Y+AVAQ++ + + Sbjct: 299 LKIRTVAAGNNVPVLSAPALSRAIYHSTELDQEIPAGLYRAVAQVLAYVLQLR 351 >gi|167034909|ref|YP_001670140.1| flagellar biosynthesis protein FlhB [Pseudomonas putida GB-1] gi|166861397|gb|ABY99804.1| flagellar biosynthetic protein FlhB [Pseudomonas putida GB-1] Length = 380 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 185/354 (52%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ S Sbjct: 1 MAESESGQDKTEDPTEKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S T+ + D + L A V P L+L + + + + + Sbjct: 61 -MMRMNFSLTREVIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S+N+L +K+ K ++ + + L+ + +L + Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNSLTELLKALAKFFVILIVAVVVLSNDRQALLSIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + D+ + +Q + K+KM+KQE++DE K S G P Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A +A +IITNPTHYA+AL+Y + AP+L+AKG + + Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+I EH I I E P+LAR+++ + IP Y AVAQ++ ++ + Sbjct: 300 ALKIREIGVEHKIQILESPALARAIYYSTEVEQEIPAGLYLAVAQVLAYVFQIR 353 >gi|157959922|ref|YP_001499956.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC 700345] gi|157844922|gb|ABV85421.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC 700345] Length = 376 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +KTE + KK++ A +G P S++ + + ++ C + L I + + Sbjct: 1 MS-KDTGQSKTEDATPKKLKQAREQGQVPRSKDFTSAALVMGCALLLTTSAGE-IGARVA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L T+ +L++ + L L ++ P +L + + + + + N Sbjct: 59 QLARTNMQFTKAQLDEPGMMTRHLGQALLEILYILAPLFILVALIAMIAGAMPGGWIFNF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ G+ R+ SI +L +KS +KI+L+G I+ + L +N T+L F Sbjct: 119 GNAGFKYSRIDPIAGLGRMVSIKSLAELIKSVLKIVLLGGIMLVFLDKNLQTLLTFSQLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + L + + +D+ + Y Q +++LKMS QE+KDE KQ G P Sbjct: 179 IDEAITRVIDMLSLGVFYLGLGLLFIACIDLPYQYWQHHNELKMSLQEVKDEHKQQEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + + R + + A +++ NPTHYA+AL+Y + DAP ++ KG + +A Sbjct: 239 EIKAKIRQMQQRISRSRADVSIPNADVLLVNPTHYAVALKYDANKADAPYVLTKGTDELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A H + I E P L R+++ I IP + A+A ++ + + Sbjct: 299 LYMREVAKRHGVEILELPPLTRAIYYSTNIEQQIPASLFVAIAHVLTYVMQIR 351 >gi|295399827|ref|ZP_06809808.1| flagellar biosynthetic protein FlhB [Geobacillus thermoglucosidasius C56-YS93] gi|294978230|gb|EFG53827.1| flagellar biosynthetic protein FlhB [Geobacillus thermoglucosidasius C56-YS93] Length = 360 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S + + +L + L F + + +H Sbjct: 13 GEKTEKATPRKRQEVRQKGQVAKSADINTALVMLVVFLVLSFSGTRHKELLLRLMHQSFE 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L I + + L + + +V P L + + +Q + +K ++ Sbjct: 73 QYALMDL-TIGAVHHIFLALLKNVATIVAPIFLAAVAAACLANFLQVGFLFTTEPLKINW 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R+ +G+KRI S+ LV +KS +KI +VG + L +L + + + L Sbjct: 132 SRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLEATLSS 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 LASLTVKMGLYASFALLFLAIFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + +A K++++A Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYVALKIKQLA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357 >gi|188579884|ref|YP_001923329.1| flagellar biosynthesis protein FlhB [Methylobacterium populi BJ001] gi|179343382|gb|ACB78794.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001] Length = 354 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 205/350 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTEA + +++ +A+ +G+ P SREA +F+S L LI L F + Sbjct: 1 MAEETDHESKTEAATERRVREAIEKGDIPFSREAPVFASTLGLLIALALFARGQASQLAR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L Sbjct: 61 DFAPLLDDPRGFALETGGDAMLLLSRVALAAGRFLLPILLILAVCSLTASLLQNLPRFVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + RVS G+ RI+ + V F+KS VK + V + + L ++ + + Sbjct: 121 DRIQPKWSRVSPMAGLSRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +++ + + + D+ W+ +W L+MS+Q+IKDE KQ+ G+P Sbjct: 181 PSQLPELILTVSIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSRQDIKDEHKQTEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA Sbjct: 241 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVLAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ Sbjct: 301 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 350 >gi|95929867|ref|ZP_01312608.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM 684] gi|95134163|gb|EAT15821.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM 684] Length = 353 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 183/353 (51%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ +TE +SK+ ED +G S+E + + + + + L +F+ +S S Sbjct: 1 MAE-ESGQERTEEATSKRREDFRKKGQVAQSKEVNTAALL-SLSLLLWYFYGGSFWSQLS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +V +L + + L+ P L+ ++ G + +Q + Sbjct: 59 WLVSHFWEQSGSLAVTPQSVVQILLFVLQKTAVLLSPLFLMVLVVGFFASFLQIGWLFTG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G R S +LV +KS K+ LVG + ++ + L + + Sbjct: 119 KPLMPDLTKLDPIKGAGRFVSKRSLVELVKSLAKVALVGYVAYKTVYSEFDNALYLVDMD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 LY+ VL+ + L +LD + + K+KM+KQE K+E K+S G+P Sbjct: 179 VIETLYYVGRVAMAVLMKSCGIMILLALLDFMFVRWEMEEKMKMTKQEQKEEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + +SI + R +MM +A ++ITNPTH ++A++Y Q E DAPV++AKG + +A Sbjct: 239 HLKAKVRSIQQQMARRRMMAEVPKADVVITNPTHLSVAIKYEQGEMDAPVIIAKGADNLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA E+++P+ E +AR+L+K V + +P ++AVA+++ +Y K Sbjct: 299 MKIREIARENSVPLVENVDVARALYK-VEVGEVVPEQMFQAVAEILAYVYSLK 350 >gi|170722841|ref|YP_001750529.1| flagellar biosynthesis protein FlhB [Pseudomonas putida W619] gi|169760844|gb|ACA74160.1| flagellar biosynthetic protein FlhB [Pseudomonas putida W619] Length = 380 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 182/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ Sbjct: 1 MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLL- 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L S T+ + D + L A V P L+L + + + + + Sbjct: 60 EMMRLNFSLTREVIVDEGAMGAFLLASGKMAIWAVQPVLILLFVVAFIAPIALGGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S+N L +K+ K I++ + + L + +L + Sbjct: 120 SLLQPKFSRMNPLAGIKRMFSMNALTELLKAVAKFIVILVVALVVLANDRQALLAIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + D+ + Q + KLKM+KQE+KDE K S G P Sbjct: 180 LDQAIIHSVQVVGWSALWMSAGLLLIAAADVPFQLWQTHKKLKMTKQEVKDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + I Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ + Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353 >gi|212639548|ref|YP_002316068.1| flagellar biosynthesis protein FlhB [Anoxybacillus flavithermus WK1] gi|212561028|gb|ACJ34083.1| Flagellar biosynthesis pathway, component FlhB [Anoxybacillus flavithermus WK1] Length = 360 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 172/346 (49%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S + + +L + L F ++T Sbjct: 13 GEKTEKATPRKRQEVRKKGQVAKSADVTAAFLMLIVFLVLSFSSGMWGDAITRLFRQSFQ 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + I + + L + LV P L + + + +Q + ++ Sbjct: 73 HYFFMDV-TIDSVQLIFVDLLQQLALLVGPIFLAAIAAALFANFVQVGFLFTTEPLQMKL 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ +G KRI+S+ LV +KS +K++ + + L + +L + +I Sbjct: 132 SKLDPIQGFKRIFSLRALVELLKSILKVLFISVVTFSILWMHIDDILSLSHKSIGAIAAT 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 ++ ++ + + L++ D + + + ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 LGRLTIQMGLVASVALLFLSLFDYLYQRYDFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTH+A+AL+Y + + DAP++VAKG + +A+K++ IA Sbjct: 252 QKQREMAMRRMMQEVPEADVVITNPTHFAVALKYDEQQADAPIVVAKGADYMAQKIKDIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++ I E LAR+L+ Q I IP F+KAVA+++ +Y K Sbjct: 312 KKNDVMIVENRPLARALYDQTDIGMVIPEAFFKAVAEILAYVYKTK 357 >gi|312111661|ref|YP_003989977.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1] gi|311216762|gb|ADP75366.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1] Length = 360 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S + + +L + L F + + +H Sbjct: 13 GEKTEKATPRKRQEVRQKGQVAKSADINTALVMLVVFLVLSFSGTRHKELLLRLMHQSFE 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L I + + L + + +V P L + + +Q + +K ++ Sbjct: 73 QYALMDL-TIDAVHHIFLALLKNVATIVAPIFLAAVAAACLANFLQVGFLFTTEPLKINW 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R+ +G+KRI S+ LV +KS +KI +VG + L +L + + + L Sbjct: 132 SRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLEATLSS 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 LASLTVKMGLYASFALLFLAIFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A ++ITNPTHYA+AL+Y + DAP++VAKG + +A K++++A Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYVALKIKQLA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 EH++ E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357 >gi|269836606|ref|YP_003318834.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM 20745] gi|269785869|gb|ACZ38012.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM 20745] Length = 361 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 186/353 (52%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +TE + K+ +DA +G+ P S E S + +L L +L ++ ++T Sbjct: 1 MAE-----ERTERATPKRRQDARRQGDVPRSAELSAAAGLLGALAFLQWYGGQAAGALTG 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L ++ I L + +R+V P + + ++ GI + + Q PV L Sbjct: 56 YFRGTFGGLSPSDLTPLA-IQNLAWESGMVFARVVGPLVAVVLVVGIAAGVAQTGPVFAL 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP FKR++ G+KRI+S K+ VK++++ + L A+ Sbjct: 115 AALKPDFKRINPAAGLKRIFSRRGAFETFKALVKLVIIAALTYPVLRAEVAHFASLTGAH 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SI T+ KV + L + D + ++ +L+M++QE+++E++Q GNP Sbjct: 175 PVSIAEAVGRTLVKVGLRAAGAFFILALADYAFQRWEYERRLRMTRQELREELRQIEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+R + + R R +MM A +AT+++TNPTH A+A+RY APV+VAKG L A Sbjct: 235 ELKSRIRQLQRQLARGRMMHAVPKATVVVTNPTHLAVAIRYEMRTMPAPVVVAKGSGLTA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++IA EH +P+ E LA++L++ + + IP Y+AVA +I +Y + Sbjct: 295 ERIKQIAREHAVPVVENKPLAQALYRMADVGAEIPVALYEAVADVIAYVYRLR 347 >gi|70729046|ref|YP_258780.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf-5] gi|68343345|gb|AAY90951.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens Pf-5] Length = 378 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ +D+ +G S+E + + +LA LL + + Sbjct: 1 MAESESGQDKTEEPTEKRKKDSREKGEIARSKELNTLAIMLAGAGGLLVYGGGLALDLL- 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L S + L + L H A V P LL ++ + + + Sbjct: 60 EIMRLNFSLPREVLLSPGAMGLYLLHSGKIAILAVQPVLLTLLLAAVIGPISLGGWLFAG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S L+ +K+ K LV + L+ + +L Sbjct: 120 KSLAPKFSRMNPANGLKRMFSPTALIELLKALAKFALVLFVALSVLSADIDDLLRIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + +D+ +Q + KL M+KQE++DE K G P Sbjct: 180 LEKAIIHSIQVVGWSTLWMACGLILIAAVDVPVQLYQAHKKLLMTKQEVRDEHKDQEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM A A ++ITNPTHYA+AL+Y + APVL+AKG + +A Sbjct: 240 EVKQRIRQLQREMSQRRMMAAIPEADVVITNPTHYAVALKYDAEKGGAPVLLAKGSDFLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA H + + E P+LARS+F + IP Y AVAQ++ +Y + Sbjct: 300 LQIREIAVAHEVMLLESPALARSIFYSTELEEEIPAGLYLAVAQVLAYVYQIR 352 >gi|78047537|ref|YP_363712.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925983|ref|ZP_08187349.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118] gi|78035967|emb|CAJ23658.1| flagellar biosynthesis pathway component FlhB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543579|gb|EGD14996.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118] Length = 376 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMVLARGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKLRETPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + +++ + ++ Sbjct: 120 KAIMPDLSKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISKGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|294664739|ref|ZP_06730068.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605493|gb|EFF48815.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 376 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMVLARGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + ++ + ++ Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|167645349|ref|YP_001683012.1| flagellar biosynthesis protein FlhB [Caulobacter sp. K31] gi|167347779|gb|ABZ70514.1| flagellar biosynthetic protein FlhB [Caulobacter sp. K31] Length = 360 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 193/353 (54%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ +KTE P++KK+ DA +G+ P S + S +S+ ++ + + Sbjct: 1 MADDQDEASKTEEPTAKKLSDARAKGDVPKSADISQLASLSGAFGVVVIAGGWLTRDLVN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A A +E + + ++A ++ +++ + G + + Q +L+ Sbjct: 61 QLTPFFAHAGTMDVE--GGVNAIAKTAVMAALPALVLVMVVSGLLGAAANVAQSGFILSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP +++ + +G+KR++ ++ V F KS VK ++ G I + + + + + + Sbjct: 119 DKIKPDLQKLDIIKGLKRVFGMDGFVQFAKSAVKFLVTGLIAWYVVKPDAAQIPNLVGMD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +I+ + K+ M+L+F+ D W ++ +++MS Q+IKDE KQS G+P Sbjct: 179 VGAIIPLSMKLCTKLFWMVLIFLMATAGFDWFWQRLRFNKRMRMSLQDIKDEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K +QK + R R +MM A +AT++I NPTHYA+AL+Y Q EN AP+ VAKG + +A Sbjct: 239 HVKGKQKQLRMQRSRQRMMAAVPKATVVIMNPTHYAVALKYEQGENAAPICVAKGVDDLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A E + I E+P LAR+L+ + ++ IP ++AVA++I + K Sbjct: 299 LRIRAVAEEAGVYILEDPPLARALYAAMDVDEQIPAEHFEAVAKVIGFVMSNK 351 >gi|329888173|ref|ZP_08266771.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC 11568] gi|328846729|gb|EGF96291.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC 11568] Length = 358 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 103/355 (29%), Positives = 190/355 (53%), Gaps = 2/355 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ P++KTE + +K+E+A +G+ S + + S+ LL + Sbjct: 1 MADGPDPESKTEDATPRKLEEARKKGDVAKSPDVAAALSLAGAAGVLLAGGGWFSTRIAE 60 Query: 61 DLHVLLASA-TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L LA + V + H +A+ + + ++ G+G L Q + Sbjct: 61 ALTPFLAQPHAMIGGLEAGGGVEIGMHAVWAAAPFLAALMFAVILGGVGGNLAQSGLIFT 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + VKP + +V+ EG KRI+ + LV F+K+F+K++ +G + L + + + + Sbjct: 121 ADKVKPKWSKVNPLEGFKRIFGPDGLVQFLKTFIKLVAIGAVCWWVLKPHARELENLAAM 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P IL A +++ L+F++ D W ++ +++M+K+E+K++ KQS G+ Sbjct: 181 SPAMILPFARDLALALMLSALVFLSLTAGADYLWQRMRFAKRMRMTKEELKEDFKQSDGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNL 298 P +K + + I R R +MM+A AT+IITNPTHY++ALRY + + APV VAKG + Sbjct: 241 PHVKAKLRQIRMQRGRQRMMQAVPDATVIITNPTHYSVALRYEPDKGDGAPVCVAKGVDA 300 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++R++A EH +PI E LAR+L+ V ++ IP ++A A++I + ++ Sbjct: 301 LALRIREVAREHKVPIVENVPLARALYAAVEVDGVIPREHFEAAAKVIGFVMQQR 355 >gi|292489168|ref|YP_003532055.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|292900286|ref|YP_003539655.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291200134|emb|CBJ47260.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291554602|emb|CBA22250.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430] gi|312173327|emb|CBX81582.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC BAA-2158] Length = 381 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS ++ + KTEAP+ +I A EG P SRE + +L +L + S+ Sbjct: 1 MS-QESDNEKTEAPTPSRIARAREEGQIPRSRELTTLLMLLVGWGLMLCSGGNLVRSLQG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L + + D + ++ L A ++P + ++ + + + +L+ Sbjct: 60 LLHNGLI-FDRLLILDPAQMLQRSASLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K+++ GIKR++S +K+ +K++L + L N + I Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + L+ +++ + + D+ + + + KL+MS+QEIKDE K+ G+P Sbjct: 179 LGMALTDISSLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R+ + +MM A +I+ NPTHY++AL+Y AP +VAKG L+A Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A H +P+ E P LAR+L++ I + IP Y AVA+++ +Y + Sbjct: 299 LRIRELAESHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351 >gi|21242681|ref|NP_642263.1| flagellar biosynthesis protein FlhB [Xanthomonas axonopodis pv. citri str. 306] gi|21108153|gb|AAM36799.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 376 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMVLARGIGDGAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + E+ + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + ++ + ++ Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|310659024|ref|YP_003936745.1| flagellar export pore protein [Clostridium sticklandii DSM 519] gi|308825802|emb|CBH21840.1| flagellar export pore protein [Clostridium sticklandii] Length = 363 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 185/346 (53%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE S KK +D+ +G SRE + ++++A ++ L + ++T + Sbjct: 15 EEKTEKASPKKKQDSRKKGQVMQSREINTAAALMASVLALKYSGGFMFRTITEATYFFRD 74 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L + +L ++ + ++ V+ + + + + IQ + +K Sbjct: 75 LLYTDILNESIGGYKILIYMIMYVTKAVVIVIGVGFVAAFITSKIQVGNLFTTETLKIKP 134 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ EG KR++S+ + V +KS +KI +VG + L +N +L P Y Sbjct: 135 ERLNPIEGFKRMFSMRSFVELVKSLLKIGVVGFVGYSYLAKNIGLVLKSQQLKPIQFSYM 194 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 F + I + I + +LD + + + LKMSKQEIK+E KQS G+P IK++ K Sbjct: 195 IFELSINLAIRMTFAITVIAILDFFYQRYDYEKNLKMSKQEIKEEYKQSEGDPQIKSKIK 254 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTH+A+A++Y + + +AP +VAKG+NLIA+ +++ A Sbjct: 255 EKQRQAAMRRMMQEIPKADVIITNPTHFAVAIKYDEDKFEAPYVVAKGKNLIAQNIKQKA 314 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E NIP+ E LA++L+K+V I I P Y+AVA+++ +Y K Sbjct: 315 REVNIPVVENKPLAQALYKEVEIGQMISPQLYEAVAEILAYVYSLK 360 >gi|163850079|ref|YP_001638122.1| flagellar biosynthesis protein FlhB [Methylobacterium extorquens PA1] gi|163661684|gb|ABY29051.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens PA1] Length = 353 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 120/350 (34%), Positives = 204/350 (58%), Gaps = 1/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F + Sbjct: 1 MADDD-KESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L Sbjct: 60 DFAPLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P + RVS G RI+ + V F+KS VK + V + + L ++ + + Sbjct: 120 DRITPKWSRVSPMAGFTRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +++ + + + D+ W+ +W L+MS Q+IKDE KQ+ G+P Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349 >gi|312126838|ref|YP_003991712.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor hydrothermalis 108] gi|311776857|gb|ADQ06343.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor hydrothermalis 108] Length = 366 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 186/344 (54%), Gaps = 1/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S I + ++ Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIEPLQQGSKYFFSN- 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 LED+ LL+ + ++ ++V+P L M Q ++ +K SF++ Sbjct: 75 LNYNLEDVRDASRLLSFIITTSLKMVLPFCLTIMFVATIVEWAQSSFLITAQSLKMSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG KRI+SIN++V +KS +K++++G +L+ N +I+ +F Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYEMNVLTIVKFSF 194 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK++ + Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA K+++ A + Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIK 314 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H I I E LA++L+ I IPP Y+AVA+++ +Y K Sbjct: 315 HRIEIVENRELAKALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358 >gi|331006676|ref|ZP_08329954.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] gi|330419508|gb|EGG93896.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] Length = 377 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 181/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+D+ KTE + KK E A +G P S+E S +LA I L + F + + Sbjct: 1 MSESDSSQEKTEEATPKKAEKAKEDGQVPRSKELITTSVLLAGTIGL-YLFGGILANSMV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ L + ++ + D +++ L A +IP + ++ I + + + Sbjct: 60 DIAKLNFAISREAIFDPAYMFSNLGQSFYDAFLALIPIFAVLLIAAIVGPIGLGGWLFSA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+KR++S+ L+ K+ K++L+ + + L ++ + Sbjct: 120 KSMMPKMSRMNPGAGLKRMFSVTALIELAKALAKVVLIILLSLLLLKSLEGELMSLAYQD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ + H+ I + L + ++D+ + KLKM+ QE+KDE+K + G P Sbjct: 180 INASIMHSLEISMWSAIALSLVTIFIAIVDVPIQIWESAKKLKMTMQEVKDEMKDTDGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MM A ++ITNPTHY++A++Y + P++VAKG +L+A Sbjct: 240 EVKGRIRQLQQEIANRQMMGEVPEADVVITNPTHYSIAVKYKPEMMETPIVVAKGVDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EH++ I E P LAR+++ I+ IP Y AVA+++ ++ + Sbjct: 300 FRIREVAKEHSVDIVESPILARAIYNTTKIDEPIPKGLYIAVAKVLAYVFQLR 352 >gi|146341890|ref|YP_001206938.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. ORS278] gi|146194696|emb|CAL78721.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. ORS278] Length = 359 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE P+ K+++ AL G+ S+E + + I A + + F +V Sbjct: 1 MAEEGDTEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMTTFSGSIGTAVLV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+A++ D + ++ L LS + + +L+ M+ I ++Q V + Sbjct: 61 PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KPS ++S G KR++ NF K K++L+GT++ + L + + + Sbjct: 120 EPLKPSLSKISPLSGAKRLFGKQAAANFAKGLFKLVLLGTVMVMILWPERLRLEALLHMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L ++ ++ +A + + D + Y QWY + KMS QE+K+E KQS G+P Sbjct: 180 VAELLGVTMSLTTHLMGSVVALLALVAIGDYLFQYRQWYERQKMSLQEMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALSYERG-MQAPVCVAKGVDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IPI E LAR+L+ V I+ IP Y AVA++I + + Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDEEIPVEHYHAVAEIIGYVMGLR 351 >gi|82702438|ref|YP_412004.1| flagellar biosynthesis protein FlhB [Nitrosospira multiformis ATCC 25196] gi|82410503|gb|ABB74612.1| flagellar biosynthetic protein FlhB [Nitrosospira multiformis ATCC 25196] Length = 392 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ +TE S +++E + EG AP S E S F+ ++A L + Sbjct: 1 MSE-ESDQERTEPASPRRLEKSREEGQAPRSTELSTFALLIAAGTGLWLMGGHLSSQLAR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + + + L S A P L+L ++ + + ++ + + Sbjct: 60 LMKEGM-HIPRETGFEPARLAERLFDQSFHALITFAPFLILMILVALVAPMLLSGWLFSW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P FKR++ G+ R++S+++L+ K+ +K L+G ++ ++L I+ Sbjct: 119 KSLNPDFKRINPLSGLSRMFSLHSLLELAKALLKAALIGGAGVWTIWHYKESVLSLIARP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L H V I + + +D+ + Y KL+M+K+E++ E K++ GNP Sbjct: 179 LVPGLTHMGELVALSFFSIAGTMILIATVDVPFKLWDHYRKLRMTKEEVRQENKETEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R ++ R R +MM RA +IITNPTHY++ALRY + AP +VAKG +L+A Sbjct: 239 QIKGRIRAQQREMARKRMMTEIPRADVIITNPTHYSVALRYEDGKMRAPRVVAKGMHLLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+I ++H +P+ E P LAR+L++ + IP Y VA+++ +Y + Sbjct: 299 LKIREIGHQHKVPVLEAPPLARALYQHTELGDEIPQTLYNVVAEVLAYVYQLR 351 >gi|37525818|ref|NP_929162.1| flagellar biosynthesis protein FlhB [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785247|emb|CAE14188.1| Flagellar biosynthetic protein FlhB [Photorhabdus luminescens subsp. laumondii TTO1] Length = 383 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A EG SRE S +L + LL+ + S Sbjct: 1 MAE-DSDLEKTEEPTPHKREKARKEGQIVRSRELSSIL-MLTSGLSLLWMSGQSMTHELS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + + +V + L A ++P ++ + + + V + Sbjct: 59 LMVFEGFSFDHSMVSNDKQMVQQIGRLLQQAVLALLPVFAGLVLVALSAPALLGGLVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+++ G+KRI+S+N L K+ +K VG + L N+ ML I+ Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPAMLRLIAQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L A + +++ + + D+ + + KL+M++QEIKDE K+ G+P Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + AP ++AKG +IA Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALKYDEKAMSAPKILAKGAGIIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++I E+ IP+ E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIKEIGTENRIPLLEVPPLARALYRHGEIGGQIPATLYAAVAEVLAWVYQLK 351 >gi|319790410|ref|YP_004152043.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans HB-1] gi|317114912|gb|ADU97402.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans HB-1] Length = 347 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 184/353 (52%), Gaps = 9/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + KTE + ++ + A EG S++ S+ S++ + L F+ ++ Sbjct: 1 MAKDPS---KTEKATPRRRQKAREEGQVLRSQDLSIAFSLVLVAVTLFFYLP---FAFRE 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + + +++ VF+ + + L P L+ ++ G+ S ++Q + L Sbjct: 55 LLKLFNYTFEELPFLELNQFVFVSLEI---LALLTFPVFLVLLVGGVLSNVVQFGFLFTL 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G +R++S+ L +KS VK+ + ++ + S Sbjct: 112 KPLVPKLDPINPVKGFQRLFSLKTLFELVKSLVKLGFASAVGYFAVKYLTRYFTSYASFP 171 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 LY+ ++ +++ L + LD + ++ LKMSKQE+K+E KQ G+P Sbjct: 172 LEVQLYYLAKSLVVLVVAFALLAVPVAGLDFLYRRWEYEENLKMSKQEVKEERKQYEGHP 231 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+ + R +MM +A ++ITNP HYA+AL+Y + + AP +VAKG + +A Sbjct: 232 LIKSEIRKRQRQLAMRRMMAEVPKADVVITNPEHYAVALKYERGKMYAPKVVAKGVDSVA 291 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA EH +P+ E P LAR+L++ + IP FY+AVA+++ KIY ++ Sbjct: 292 LKIKEIALEHGVPVEENPPLARALYESCEVGDFIPEEFYRAVARILAKIYRRR 344 >gi|149928479|ref|ZP_01916714.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105] gi|149822813|gb|EDM82064.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105] Length = 376 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 176/352 (50%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E K S +KI A EGN P SRE +LA + LL+ + S + Sbjct: 1 MAEETD-QEKDLPASEQKIRKAREEGNLPRSRELGGGVVLLAG-VGLLYTMGGELVSQSE 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D H+ + + ++IP L+ ++ I S + + Sbjct: 59 KLMRQGLVLDRAQAFDTKHMGLKWVSMLQESLFILIPLFLVVVVAAIVSNIAVGGFNWST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ +G+K I+S+N L +K+ +K +++G + + L ++ + Sbjct: 119 KPLEPKLSKLNPVKGLKNIFSVNGLAELVKAILKTVVLGGVGYLLLMQDLGEFTQLSAMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + K +++ + + +D+ + ++Y L+M+ +E+K E K+S G+P Sbjct: 179 LEHGMAETARITIKDALILAIAFLLIVSIDVPYQLWRYYKGLRMNLEELKRESKESDGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + KS+ R R +MM + A +I+TNPTHY++AL+Y + AP +VAKG +A Sbjct: 239 HLKGKIKSMQREAARRRMMASVPNADVIVTNPTHYSVALKYDKDGKGAPRVVAKGIGPLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R++A E+ +P+ E P LAR+L+ V + IP Y AVA+L+ +Y Sbjct: 299 LKIREVAQENKVPLVEAPPLARALYSNVELEQEIPGALYTAVAKLLAYVYAL 350 >gi|329849682|ref|ZP_08264528.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum C19] gi|328841593|gb|EGF91163.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum C19] Length = 358 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 186/354 (52%), Gaps = 1/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE S+KK+ A +G+ S + S++ + + + Sbjct: 1 MAEEPDSEDKTEEASAKKLSQAREKGDVAKSADLPQALSLIGACAVIALYGPSLSSDLVD 60 Query: 61 DLHVLLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 DL LA Q + V ++ + + +VI + + ++ GIG +++Q + Sbjct: 61 DLIPFLAHPQQLLGSLEGDGGVTIMREMVFAFLPIVIIVMGVTLLLGIGGHVMQTGLMFT 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KPS +++ G KR++ + L+ F K+ VK+I+ G I+ L + ++ A Sbjct: 121 TEKLKPSLTKLNPMSGFKRLFGFDALIQFAKTVVKLIITGAIVWQVLKGKLYEIMALAKA 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P IL +A + I + +F+ D W ++ ++KMSKQE K+E KQ G+ Sbjct: 181 SPLLILPYAMDVFVALAIAVCIFLFIEGAADYMWQRFRFMQRMKMSKQEQKEEYKQMEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK + + I + R +MM AT++ITNPTHYA+AL++ + AP+ VAKG + + Sbjct: 241 PHIKAKLRQIRMEKSRRRMMSNVKDATVVITNPTHYAVALQFEMGQMQAPLCVAKGVDTL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+ A +HN+PI E+ LAR+L+ + ++ IP + AVAQ+I + KK Sbjct: 301 ALKIREEAGKHNVPIVEDVPLARALYAAIDVDETIPEEHFAAVAQVISFVLAKK 354 >gi|289670566|ref|ZP_06491641.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 376 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDRAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPTMRANPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSS 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|258622507|ref|ZP_05717529.1| flagellar biosynthetic protein [Vibrio mimicus VM573] gi|262173373|ref|ZP_06041050.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] gi|258585207|gb|EEW09934.1| flagellar biosynthetic protein [Vibrio mimicus VM573] gi|261890731|gb|EEY36718.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451] Length = 375 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 183/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ + +KTE S++KI+ A G P ++E + + LA ++ L + I+ + Sbjct: 1 MNEH-SSQDKTEQASAQKIKKARQGGQVPRAKEFTTAAIFLA-VVLLFYAQLDHIWQSMA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T++ L + +V L +++P + ++ +GS ++ + Sbjct: 59 GIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ P +++ GIKR++S +LV +KS +K++++ ++ L + +L Sbjct: 119 ANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYLDNHLQPLLGMQRLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + V+DI + ++ +L+MSKQE+K+E KQ+ G P Sbjct: 179 LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQELKEEFKQNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK+R + I + R K+ + A +++TNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + + Sbjct: 299 IHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVLQLR 351 >gi|218528682|ref|YP_002419498.1| flagellar biosynthesis protein FlhB [Methylobacterium chloromethanicum CM4] gi|240137212|ref|YP_002961681.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] gi|218520985|gb|ACK81570.1| flagellar biosynthetic protein FlhB [Methylobacterium chloromethanicum CM4] gi|240007178|gb|ACS38404.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens AM1] Length = 353 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 120/350 (34%), Positives = 204/350 (58%), Gaps = 1/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F + Sbjct: 1 MADDD-KESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L Sbjct: 60 DFAPLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P + RVS G RI+ + V F+KS VK + V + + L ++ + + Sbjct: 120 DRITPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +++ + + + D+ W+ +W L+MS Q+IKDE KQ+ G+P Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349 >gi|239628943|ref|ZP_04671974.1| flagellar export protein [Clostridiales bacterium 1_7_47_FAA] gi|239519089|gb|EEQ58955.1| flagellar export protein [Clostridiales bacterium 1_7_47FAA] Length = 353 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 167/345 (48%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + K+ +D +GN S + + S+L L + +++ + Sbjct: 4 DEKTEKATPKRRQDERKKGNVFQSNDVAAVCSMLVLFHSLKALAPHMYRNFRDAMYMFMG 63 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A +L L +P L + ++ + Q +++ +K Sbjct: 64 MAADSDSFHQEAGREMLVKAMLLFLESALPLLFIGVLTAVAVTFFQTRMAFSMDVLKFKM 123 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R+S +G KR++SI ++V +K+ +KI ++G ++ + L + + L Sbjct: 124 ERISPLKGFKRMFSIRSVVELIKALIKITILGWVVYVFLKGRMEELSRLMEGTVEGALIF 183 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 TV ++ + + L +D + + ++ L+MSKQEIK+E KQ+ G+P IK + + Sbjct: 184 TGNTVISLVDTVGVAFIFLASMDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDPQIKGKIR 243 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +I+ NPTHYA+AL Y N APV++AKG + +A K+ ++ Sbjct: 244 EKQRQMASMRMMQNVPKADVIVRNPTHYAVALGYDADRNRAPVVLAKGADHLALKIVEVG 303 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + + I E+ LAR L+ V ++ IP +Y+ VA+++ +Y Sbjct: 304 EANGVYILEDRPLARGLYASVEVDMEIPEEYYQTVAKILAFVYKL 348 >gi|289666118|ref|ZP_06487699.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 376 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ +TE P+ K++ +A +GN P SRE S + + ++ L + GI + Sbjct: 1 MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDRAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + + L L +++P + + + G+ L+ + Sbjct: 60 VWMKTALSPDPTMRANPIALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSS 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ GIKR++ N+L +KS ++++ VG + ++++ + +S Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALVSQP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L + L +D + W KLKM+++EIK E+K+S G+P Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + + +MMEA +A +++ NPTHYA+AL+Y + AP++VAKG + +A Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+ +H + I P LAR+L+++ I IP Y VAQ++ +Y + Sbjct: 300 FRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352 >gi|158422263|ref|YP_001523555.1| flagellar biosynthesis protein FlhB [Azorhizobium caulinodans ORS 571] gi|158329152|dbj|BAF86637.1| flagellar biosynthetic protein [Azorhizobium caulinodans ORS 571] Length = 359 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 121/352 (34%), Positives = 207/352 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ ++KTE + +K+ DAL +GN P SRE +LF+S+L L L FF + +T Sbjct: 1 MSDDTDKESKTEEATERKVSDALEKGNVPYSRETALFASLLGILGVLTFFVVNPVRILTV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L L + L + L + L ++++P +LL G+ + L Q P L L Sbjct: 61 ELTHFLDNPAGFTLAGSDDAIALAWGVLLLMGQVLLPAVLLLAAAGLAASLFQNTPRLVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N ++P F R+ +G RI+S + + F KS K+++V I + L +++ + ++ Sbjct: 121 NRIQPQFSRIDPMKGWTRIFSRDGGIEFGKSAFKLVVVAVICGVLLMSERDKVMNAMYSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +++ + + L LD+ WS W ++L+M+KQE+K+E+KQ G+P Sbjct: 181 PLLMPSVILSLATRLISAVCVATIVLVALDLVWSRFHWRAELRMTKQEVKEEMKQQEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R +S+A+ R R +MM + +AT+++ NPTHYA+AL Y + + AP +VAKG +LIA Sbjct: 241 MVKARMRSLAQQRARQRMMSSVPKATLVVANPTHYAIALYYDRQKGGAPQVVAKGTDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA +IP+ E+ LAR+++ V ++ IPP FYK VA+++Y IY + Sbjct: 301 LKIREIAERCSIPVIEDKPLARAMYDAVEVDQWIPPEFYKPVAKILYFIYSR 352 >gi|325273555|ref|ZP_08139785.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51] gi|324101315|gb|EGB98931.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51] Length = 380 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ D+ +G S+E + + LA LL F ++ + Sbjct: 1 MAESESGQDKTEDPTEKRKRDSREKGEVARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + S T+ + D + L A V P L+L + + + + + Sbjct: 61 -LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S++ L +K+ K ++ + + L + +L + Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMHALTELLKALAKFFVILVVAVVVLINDRQALLSIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + D+ + +Q + KLKM+KQE++DE K S G P Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKLKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A +A +IITNPTHYA+AL+Y + AP+L+AKG + I Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ + Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353 >gi|307546924|ref|YP_003899403.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581] gi|307218948|emb|CBV44218.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581] Length = 388 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 176/354 (49%), Gaps = 2/354 (0%) Query: 1 MSENDA-PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+++ + + KTE + +++E A EG SRE + F +LA ++ L + Sbjct: 1 MADDSSSDEEKTEDATPRRLEKAREEGQVARSRELATFMLLLAGVLGLASLGGTLYDQIG 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + ++ +E + L L ++P LL + + + + +++ Sbjct: 61 GVMEQAFLFDRRQAMETSPMLAEALM-LGRHTLISLLPLFLLLTVVALVAPALLGGWLIS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP +++ +G+KRI+ LV K+ K +LVG++ L + + +S Sbjct: 120 AKSLKPQASKLNPLKGLKRIFGTQALVELAKAIAKSVLVGSVGMAYLYLHRGEFMALMSQ 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 H L A + +++L + + ++D+ + +L+M+K E+K E K+S G+ Sbjct: 180 PIHQALARAMGMAAEACGLMVLTLLVVILIDVPYQLWSHAKQLRMTKDEVKREHKESEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R + ++ R +MM A +IITNPTHYA+AL Y QT AP +VAKG + + Sbjct: 240 PQVKGRIRQQQQAMARGRMMSQVPEADVIITNPTHYAVALVYEQTGMAAPRVVAKGADAV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R++ E +P+ E LARSL+ V + + IP Y AVA+++ + K Sbjct: 300 AARIRELGEEAGVPLLEAAPLARSLYHHVDLEAEIPAALYTAVAEVLAWAFGLK 353 >gi|172057870|ref|YP_001814330.1| flagellar biosynthesis protein FlhB [Exiguobacterium sibiricum 255-15] gi|171990391|gb|ACB61313.1| flagellar biosynthetic protein FlhB [Exiguobacterium sibiricum 255-15] Length = 363 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 169/346 (48%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE S +K +D+ +G S + + + + L FF L L+ Sbjct: 15 GEKTEKASPRKRDDSRKKGQVAKSADLTSSLMLFGMFLILFFFGPFLGKRFVMVLENGLS 74 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + T + I ++ + + LV P + ++ GI +Q +L+ ++P Sbjct: 75 AQTVLVAVEEGRIQEVMIEMLVQMGILVAPFFVTAVVIGILGNFVQIGALLSTESIQPKL 134 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ +GIKRI S+ L+ F+KS K++++G L N + S L Sbjct: 135 DRINPLQGIKRIVSMKALIEFLKSVFKLLVIGATSGTVLWNNKVEISRLTSEPIGDALAI 194 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + I + + + L VLD + + ++MSKQ++KDE K + G+P IK + K Sbjct: 195 IGHLTFLLGISVSIALIVLAVLDFAYQKFDFEKSIRMSKQDLKDEHKNTEGDPQIKGKIK 254 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+A++Y ++ AP++VAKG + +A ++R+ A Sbjct: 255 QQQREMAMRRMMQEIPNADVVITNPTHYAVAIQYDDGKHAAPIVVAKGVDAVAFRIREKA 314 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IPI E LAR+LF + I A+ FY+A+A+ + +Y K Sbjct: 315 TAAEIPIIENRPLARALFAKSEIGMAVDESFYQALAETLAFVYQMK 360 >gi|120597286|ref|YP_961860.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1] gi|146294569|ref|YP_001184993.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32] gi|120557379|gb|ABM23306.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1] gi|145566259|gb|ABP77194.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32] Length = 376 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 172/353 (48%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ +KTE + +K+ A EG P S++ + + +L C + L + + S Sbjct: 1 MSQTQ-QQDKTEEATPQKLRKARKEGQVPRSKDLASAALVLGCSVMLTSN-ANWFATKVS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L T+ +L+ +V L + ++ P ++ + + + P+ N+ Sbjct: 59 GLTKYNMLLTRAELDQPDMMVRHLGTSLVEMLTILSPLFIMVALLAAIAGALPGGPIFNV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ G+ RI+S +LV +KS +KI+L+ +I+ + L + ++L + Sbjct: 119 GNANFKYSRIDPIAGVGRIFSTQSLVELLKSCLKIVLLISIMLVFLNGHLQSLLSYSHRP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + ++ + + + + +D+ + Y +L+MS+QE+KDE Q G P Sbjct: 179 IDEAVRDGINLLSQGMLYLGVGLLVIAFIDVPYQYWHHKKQLRMSRQEVKDEHTQQEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A Sbjct: 239 EIKAKIRQLQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVLTKGTEELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A +H + I + P L R+++ ++ IP + A+A ++ + K Sbjct: 299 LYMRELAKKHGVEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351 >gi|254559224|ref|YP_003066319.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] gi|254266502|emb|CAX22266.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens DM4] Length = 353 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 120/350 (34%), Positives = 204/350 (58%), Gaps = 1/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D ++KTEA + +++ DA+ +G+ P SREA +F+S L LI L F + Sbjct: 1 MADDD-KESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D LL LE + LL+ ++L+A R ++P LL+ + + + L+Q +P L Sbjct: 60 DFAPLLDDPRGFSLESSGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P + RVS G RI+ + V F+KS VK + V + + L ++ + + Sbjct: 120 DRITPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +++ + + + D+ W+ +W L+MS Q+IKDE KQ+ G+P Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+A+ R R++M+ RAT++I NPTH+A+ALRY +EN AP+++AKGQ+LIA Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R IA E I + E+ LARSL+ V ++ IP FY+AVAQ+++ ++ Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349 >gi|39995534|ref|NP_951485.1| flagellar biosynthesis protein FlhB [Geobacter sulfurreducens PCA] gi|39982297|gb|AAR33758.1| flagellar biosynthetic protein FlhB [Geobacter sulfurreducens PCA] gi|298504535|gb|ADI83258.1| flagellar biogenesis protein FlhB [Geobacter sulfurreducens KN400] Length = 352 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 188/350 (53%), Gaps = 2/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +KTE P++KK+++A +G P SR+ + +++A ++ L ++ Sbjct: 2 SDDKHSKTEKPTAKKLDEAKKKG-VPHSRDLTSTVTLIAAMVALYTTGGFMFTTLKRTSG 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LL S L + S + LL L L +V+P +L+ ++ G+ + ++Q +N + Sbjct: 61 ELLGSMGTFHLTEAS-VEHLLIKLFLVFLSVVMPFMLVVVISGLATTMVQVGFSMNSERI 119 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +++ +++++ ++LV +K+ +KI++VG + + + +L + Sbjct: 120 TFKLDKLNPVTNAQKLFNKDSLVEMLKAVLKIVIVGYMSYKIMRDEMDGLLFLADTDLAG 179 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL K++I + L VLD+ + ++ LKM+KQE+KDE K+S G+P +K Sbjct: 180 ILEVFKHLAFKLVIHTCGVLLILGVLDLAFVKWRFIDNLKMTKQEVKDEHKESEGDPKVK 239 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 + + + + + ++ + A +++TNPTHYA+AL+Y + AP+++AKG + +A+ + Sbjct: 240 GKIRQMQFQQAQKRLRKVIPTADVVVTNPTHYAVALKYERETMAAPLVLAKGVDHMAQTI 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IA E+N+ + E LAR L+ QV IP Y AVA+++ +Y K Sbjct: 300 KAIARENNVMLVENRFLARELYAQVKEGQPIPESLYTAVAEVLAYVYSLK 349 >gi|315179661|gb|ADT86575.1| flagellar biosynthetic protein FlhB [Vibrio furnissii NCTC 11218] Length = 376 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + +KTE S +K++ A +G P ++E + LA +Y P I+ + Sbjct: 1 MSDQASSQDKTEKASPQKVKKAREQGQIPRAKEFTTAVIFLAVAVYFYAQL-PAIWQSIA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T+ L++ ++ L H L++P L+ ++ + S +I + Sbjct: 60 GVFRYNLSLTRADLDNPMQMIEQLGHSLGMVIELLLPMFLVIIVVTLASSMILGGWLFRP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ P +++ GI RI+S +LV +KS +K+ ++ ++ L + ML Sbjct: 120 ANLLPKLSKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLGMQGLP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L+++ + V+DI + + +LKM+KQE+K+E K + G P Sbjct: 180 LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I + R ++ + +A ++I NPTHYA+AL+Y +DAP +VAKG + A Sbjct: 240 EIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAKGVDETA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++A ++ + I P L RS++ I A+P Y AVA ++ + K Sbjct: 300 LHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHILTYVLQLK 352 >gi|158320532|ref|YP_001513039.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii OhILAs] gi|158140731|gb|ABW19043.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii OhILAs] Length = 362 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 182/346 (52%), Gaps = 1/346 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE + KKI+DA +GN S+E + +LA I + F + S+ + + Sbjct: 11 SEEKTEQATPKKIKDAREKGNVLQSKEVNSALILLAIFIIINAFATFIGVSLLNMTRAVY 70 Query: 67 ASATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + ++ L L + V P L ++ G+ S Q +L + Sbjct: 71 TEFLSANIAFSVKNLQILSIKLMIYFFIAVGPIALTSLVVGLISSYAQVGVLLTSKPLMF 130 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ EG K+++S+ ++V +K+F+++ ++G I + +L+ + SIL Sbjct: 131 DLNKINPIEGFKKMFSMRSVVELLKAFIRLGVIGYISYDYVKGQVGVILETTGMDISSIL 190 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + I + + L VLD + +++ LKMSKQEIK+E KQ+ GNP IK++ Sbjct: 191 KAIMSMTVDIGIKAGIALIALAVLDYYYQRYEYNKNLKMSKQEIKEEYKQTEGNPQIKSK 250 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ A +IITNPTH+A+ ++Y E DAP ++AKGQ+LIA+ ++K Sbjct: 251 IKEKQRQMAMRRMMQDVPSADVIITNPTHFAIGIKYDLNEFDAPKVIAKGQDLIAQNIKK 310 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA E+N+ + E LAR+L+ V + +PP Y+AVA+++ +Y Sbjct: 311 IALENNVTVVENKPLARALYDSVEVGQFVPPDLYQAVAEVLAYVYR 356 >gi|77918767|ref|YP_356582.1| flagellar biosynthesis protein FlhB [Pelobacter carbinolicus DSM 2380] gi|77544850|gb|ABA88412.1| flagellar biosynthetic protein FlhB [Pelobacter carbinolicus DSM 2380] Length = 351 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 184/353 (52%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D +TE + K+ D +G S+E + + L+ F+ +++ Sbjct: 1 MADSD--QERTEQATGKRRADFRQKGQVAQSKEVHTAALMTGTLLLWTFYAPLFWRTLSD 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH L + A ++ +S ++ LL L + L+ P +L ++ GI S +Q + Sbjct: 59 MLHHLWSLAGDFEVTPVSAVM-LLGQLGQKIALLLAPIMLTTLVIGILSSYLQVGWLFTT 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ G+ ++ S + + +KS +K+ LVG + + + LD + + Sbjct: 118 KPLAPDFSKMNPVPGLAKLISKRSFIEVVKSLLKVFLVGVVAYKVILAEFGQALDLVDMD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + ++L+ + L +LD + + K+KM+KQE K+E K+S G+P Sbjct: 178 INDSVVYLARVAARILLRTCGVMILLALLDFLFVRWEMEQKMKMTKQEQKEEHKESEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R +S+ R +MM +A ++ITNPTH ++AL Y ++ AP +VAKG + +A Sbjct: 238 QIKARIRSMQMQAARRRMMAEVPKADVVITNPTHLSVALAYDRSRMSAPQIVAKGADAVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA EH +P+ E +AR LFK V + +P ++AVA+++ +Y K Sbjct: 298 MRIREIAREHKVPLVENKPVARVLFK-VDLGKDVPEEMFQAVAEILAYVYGLK 349 >gi|149908781|ref|ZP_01897441.1| flagellar biosynthetic protein [Moritella sp. PE36] gi|149808055|gb|EDM67996.1| flagellar biosynthetic protein [Moritella sp. PE36] Length = 375 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 181/352 (51%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ + KTE P+ KK +DA EG S+E + IL L +F+P + S Sbjct: 1 MSDS-STQEKTEEPTQKKRDDAKKEGQIARSKELATAGLILISGSSLT-WFAPSFSAFFS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + T+ D ++V +L ++ +++IP +L+ + ++ + L Sbjct: 59 ELFTIQMQLTREVTRDPQYMVVMLGEAIINMLKVLIPFILVLNLTTFLLGIMPGGLIFVL 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +++P +++ G+KR+ S + ++ +KS +KI L+ + L+ ++ + Sbjct: 119 KNIQPKISKMNPISGLKRMVSKDTIIELIKSILKISLISFTLYKVLSLHWHELAAMAQMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L +A + + L + + + +D+ + KLKMSKQEIKDE K + G+P Sbjct: 179 LLNVLNNAMYIMSITLSFMGAALLIVAAIDLPYQKWSMNKKLKMSKQEIKDEHKGAEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + K I R + ++ A A +I NPTHYA+A++Y + AP +VAKG + +A Sbjct: 239 EIKQKIKQIQRQMSQKRIDSAVPTADFVIVNPTHYAVAVKYDAARSQAPFIVAKGVDTMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +++KIA H++ I E P L R+++ ++ IP Y AVA ++ I Sbjct: 299 LRIKKIAESHDLDIIEAPELTRAIYHSTQVDQEIPAQLYTAVAYILTHIMQL 350 >gi|266621912|ref|ZP_06114847.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] gi|288866385|gb|EFC98683.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] Length = 355 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 164/348 (47%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D KTE + K+ +D +GN S + S+L L ++ + + + Sbjct: 4 AADEKTEKATPKRRQDERKKGNVFQSSDVIAVCSLLVLFNSLNALAPMIYRTLKASMELF 63 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + A + + L + +P L + + + + Q + + +K Sbjct: 64 FSYAASTEPLTAEDLPDKLLKAMFLFGQAALPLLFIGVAVAVVTTFFQTRLSFSADVMKF 123 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R+SL +G KR++SI ++V +K+ +KI ++ +I + + + Sbjct: 124 KMDRISLLKGFKRMFSIRSVVELLKAMIKITILAWVIYSYIKGRIHEFARLMDGTVQAAF 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + T ++ + L D + + ++ L+MSKQEIKDE KQ+ G+P IK R Sbjct: 184 VYVGDTAVSLVNTVGAAFIFLAAFDYLYQWWEYEKNLRMSKQEIKDEYKQTEGDPQIKGR 243 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A +II NPTH+A+AL Y N APV++AKG + +A K+ + Sbjct: 244 IREKQRQMASMRMMQNVPKADVIIRNPTHFAVALGYDSNTNRAPVVLAKGADHLALKIVE 303 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + + I E+ LAR L+ V ++ IP FY+ VA+++ +Y K Sbjct: 304 VGEANGVYIMEDKPLARGLYASVEVDMEIPEEFYQTVAKVLAFVYKLK 351 >gi|319649548|ref|ZP_08003704.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2] gi|317398710|gb|EFV79392.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2] Length = 361 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 181/347 (52%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK +D+ +G S++ + +LA ++LLF S + Sbjct: 13 SGEKTEKATPKKRQDSRKKGQVAKSQDVNTAIVLLAVFLFLLFAGSYLKNIILYIFTHSF 72 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 L + ++I + + + P +L+ M+ GI + +Q + + ++P Sbjct: 73 NDYMLMPLTE-ANIQVIFLDVLKELVLFLGPIMLVAMLAGITANFMQVGTLFSTEAIQPK 131 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +++ +G KRI+S+ +V +KS +KI VG L +L + + + Sbjct: 132 LEKMDPIKGFKRIFSMRAIVELLKSMLKIAFVGVAAFAVLWLRIDEILILSQKSVGTAMA 191 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ ++ + L+VLD + + + ++MSKQ+IKDE K G+P+IK++ Sbjct: 192 TLASLTVQMGLIASAALLFLSVLDYLYQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKI 251 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K R +MM+ +A ++ITNPTH+A+AL Y +T++DAP++VAKG + +A+K++ I Sbjct: 252 KQRQREMAMRRMMQEVPKADVVITNPTHFAIALSYDETKSDAPIVVAKGVDFVAQKIKLI 311 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH++ E LAR+L+ Q I AIP F+KAVA+++ +Y K Sbjct: 312 AKEHDVIAVENRPLARALYSQAEIGQAIPEEFFKAVAEILAYVYRTK 358 >gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium cellulovorans 743B] gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans 743B] Length = 607 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 194/346 (56%), Gaps = 2/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D K+E +SKK+ DA +G S++ L + LA L + I +++ + + Sbjct: 262 DEKSEEATSKKLADAKKKGQIARSKDLGLGITFLATAFGLAALGNMFIDRMSNIIMKFFS 321 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ED ++ +L + + L++P + M+ G+ + L Q + +KP Sbjct: 322 VTNGNLTED--GLIEILKIAMIDGAILILPIAFIVMVTGVAASLAQTGFMNTSEPLKPDL 379 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+++ +G KRI+S+ ++V+ +K+ II+VG + ++++ ++ I+ +ILY Sbjct: 380 KKINPVDGFKRIFSMRSVVDLLKNVTIIIIVGYVGYKLVSDDIVDIMLLINLKEGAILYE 439 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V +L+ I L ++ + + D + ++ +++M+KQE+K+E KQ G+P IK ++K Sbjct: 440 LKKIVTSILLKIALILSVIGIADYMYQKKKFLKEMRMTKQEVKEEYKQMEGDPEIKAKRK 499 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R +MM A AT+++TNPTH+A+AL+Y + AP++VAKG + IA K+++IA Sbjct: 500 QKMKELSRARMMAAVPNATVVVTNPTHFAVALKYEEGSAGAPMVVAKGTDNIAFKIKEIA 559 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E+ +PI E LAR ++K+V I+ IP Y+AVA+++ + K Sbjct: 560 KENKVPIIENKPLARLIYKEVDIDEEIPIDMYQAVAEILAMVLKMK 605 >gi|157363487|ref|YP_001470254.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] gi|157314091|gb|ABV33190.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] Length = 376 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 180/348 (51%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A KTE P+ ++ A EG S E ++ + L + + F F I + + + Sbjct: 32 ADPEKTEKPTPRRRRKAREEGQVATSNELNMAVTFLVAVFVMRFIFQRLIMFLENGSILF 91 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L ++S ++ ++ L+ L++ ++F +Q +L+ +K Sbjct: 92 FSLEENDFLNNLSGRIYQSFKDTIFLLVLLFLSLIISVIFAGA---MQTKFLLSFKPLKM 148 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 KR++ EG KR +S+ +L +KS +K+++VG + + N+ + L Sbjct: 149 DLKRINPVEGFKRFFSMRSLFELLKSILKMVIVGFVAYSVIRSNWILFRFYSDMETVDSL 208 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F +V++ + + L ++D + ++ ++M+KQEIK+E ++ G+P ++ R Sbjct: 209 KLIFNLTYEVMLKCAIALFILAIVDYFYQRWEFEKSIRMTKQEIKEEYREIEGSPEVRRR 268 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ I R +M++ A ++ITNP+H A+A+ Y E +APV++AKG + IA+K+ + Sbjct: 269 QREIMARLARGRMLQQVPEADVVITNPSHIAVAIEYKSEEMEAPVVLAKGADEIAQKIIQ 328 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+NIP+ P +AR L+K I IPP Y+AVA+++ +Y + Sbjct: 329 IAKENNIPVVRNPQVARELYKTTDIGEQIPPNMYRAVAEILAYVYSLR 376 >gi|226944866|ref|YP_002799939.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] gi|226719793|gb|ACO78964.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] Length = 402 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 173/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTEA S +++E A EG SRE + F +LA + L + Sbjct: 17 MADESSDQEKTEAASPRRLEKAREEGQVARSRELTTFLLLLAGIAALWSMGGLLHERLAE 76 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + D + ++ L ++P LL + + + + +++ Sbjct: 77 VMEQALL-FERAQAFDSARMLARFWELGEGTLFTLLPLFLLMAVVALVAPSLLGGLLVSA 135 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R++ +G+KR++S L K+ K ILVG I L + ++ Sbjct: 136 KALQPQLARLNPLKGLKRVFSTQALAELGKAVAKSILVGWIAVFFLRKYIDELMALSGMP 195 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A + MI+L + + LD+ + KL+MSK+E++ E K+S G+P Sbjct: 196 IREALADAMRLMALASAMIVLGLILVVALDVPYQLWSHARKLRMSKEELRQEHKESEGDP 255 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S ++ R +MM A +I+TNPTHYA+AL Y + AP +VAKG + +A Sbjct: 256 HVKGRIRSQQQAMARSRMMSKVPTADVIVTNPTHYAVALSYRDGQMGAPRVVAKGADALA 315 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +P+ E LAR+L+ V ++ IP Y AVA+++ Y + Sbjct: 316 ARIRELGGEHAVPLLEAAPLARALYYHVDLDREIPVELYTAVAEVLAWAYRLR 368 >gi|288573010|ref|ZP_06391367.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568751|gb|EFC90308.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio peptidovorans DSM 11002] Length = 364 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 168/343 (48%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + +K EG S++ + I+A LI ++ F + S + L Sbjct: 15 EEKTEPATPRKRRKEREEGRVAKSQDLGASAVIIAGLIAVILFGGWIFDVILSFIRECLF 74 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L L + ++P ++ + + Q V+ + P Sbjct: 75 FIGDGTLGRTGWFHSLTMRSISAYGLAIVPMVVGCFLAAFFVSVAQVGFVMTSKPLIPKM 134 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R + G+K++ S+ +LV +K +K +++ ++ +L + M+ + + Sbjct: 135 NRFNPISGLKKVISLRSLVEMVKGILKALILAIVLYSALRGDLADMVMAVRYPIGPAVSL 194 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + + + + + + D + ++ +KMSKQEIK+E KQ G+P IK + + Sbjct: 195 LLWRIWLLCVKMTFLLLVIAIFDWSYQKWEFEKNIKMSKQEIKEEYKQMEGDPQIKQKIR 254 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R + +MM +A ++ITNPT A+AL+Y + + DAPV++AKG+ L+A+++R+IA Sbjct: 255 QKQREMAKQRMMADVPQADVVITNPTTLAIALQYDREKMDAPVVLAKGKGLLARRIREIA 314 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 E+++P+ E LA +L V + +IP YK+VA+++ +Y Sbjct: 315 EENDVPVVENKPLAWALHDSVEVGESIPETLYKSVAEVLAFVY 357 >gi|239817109|ref|YP_002946019.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110] gi|239803686|gb|ACS20753.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110] Length = 382 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ KTE S +++E A +G+ SRE + F + + L ++ Sbjct: 1 MAE-ESDLEKTEPASPQRLEKAREQGDVARSRELATFVLLGTAVAGLWLTADSLGATLRG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D SH++ + A ++P + ++ + + L+ +L+ Sbjct: 60 ALAQGL-HFDRAAAFDPSHMLARAGLMGQQALLALVPLFGMMLVAAVAAPLMLGGWLLSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++ G+ R++S L K+ K +L+G + + + +N + ++ + Sbjct: 119 KALAPKFSKLDPVAGVGRMFSAQALSELFKALAKSLLIGGVAWLVIMDNVDEVSALMAQS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L V +I + + ++D+ + ++ KL+MS+++++ E K+S G+P Sbjct: 179 ERAALPQMIVLVAHNCALIASALFLVALVDVPYQLWSYHRKLRMSREDLRQEHKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R +MM +A I++TNPTH+A+AL+Y+ + AP +VAKG +L+A Sbjct: 239 HIKAQIRRQQQQMARRRMMSEVPKADIVVTNPTHFAVALKYVDHDMRAPRVVAKGSDLMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA E+N+ I E P L R+LFK + IP Y AVA+++ +Y K Sbjct: 299 ARIREIARENNVAILEAPPLTRALFKHTRLGDEIPAGLYTAVAEVLAWVYQLK 351 >gi|260767957|ref|ZP_05876891.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|260615987|gb|EEX41172.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] Length = 376 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + +KTE S +K++ A +G P ++E + LA IY P I+ + Sbjct: 1 MSDQASSQDKTEKASPQKVKKAREQGQIPRAKEFTTAVIFLAVAIYFYAQL-PAIWQSIA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T+ L++ +V L H L++P L+ ++ + S +I + Sbjct: 60 GVFRYNLSLTRADLDNPMQMVEQLGHSLGMVIELLMPMFLVIIVVTLASSMILGGWLFRP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ P +++ GI RI+S +LV +KS +K+ ++ ++ L + ML Sbjct: 120 ANLLPKLNKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLGMQGLP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L+++ + V+DI + + +LKM+KQE+K+E K + G P Sbjct: 180 LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I + R ++ + +A ++I NPTHYA+AL+Y +DAP +VAKG + A Sbjct: 240 EIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAKGVDETA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++A ++ + I P L RS++ I A+P Y AVA ++ + K Sbjct: 300 LHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHILTYVLQLK 352 >gi|329897646|ref|ZP_08272170.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC3088] gi|328921095|gb|EGG28504.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC3088] Length = 383 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 176/351 (50%), Gaps = 1/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+END+ KTE P++K+I+ + ++G S+E S+ ++++ ++ F I ++ Sbjct: 1 MAENDSTQEKTEEPTNKRIQKSRDDGQVARSQELSIAATVITVAGFMYLFGGAMIIKISE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + D+S + + + A +V P + + + Sbjct: 61 QFAAAFV-FDPKHVFDVSGLTSRVGKGLMDALLVVAPLGAAAFVVSFLVSGVLGGYNFSW 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ + + +F K+ K +LVG + + + ++ N Sbjct: 120 KAIAPKASKLNPLSGLKRMFGMKVVFDFFKTIGKFLLVGGLTYLLVDNYVGQLMFTSLMN 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++ L + + ++D + ++ KLKM+KQE+K+E K + G P Sbjct: 180 FEGGLALGGSIIVFSFLVATLALIIIAMIDAPYQLQEYNKKLKMTKQEVKEEAKDTDGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R +M+EA + A ++ITNP H+A+AL Y T + P LVAKG + IA Sbjct: 240 EVKQRIRQKQRELASMRMLEAIADADVVITNPEHFAVALAYDPTGDLPPKLVAKGSDFIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +K+R+ A E +P+F P LARSLF +N IP Y+AVAQ+I I++ Sbjct: 300 EKIRERAKEEGVPLFTSPILARSLFFTTDLNGYIPEPLYEAVAQVIAFIFN 350 >gi|148266206|ref|YP_001232912.1| flagellar biosynthesis protein FlhB [Geobacter uraniireducens Rf4] gi|146399706|gb|ABQ28339.1| flagellar biosynthetic protein FlhB [Geobacter uraniireducens Rf4] Length = 354 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D +KTE P+ K+I DA +GN P SR+ + +++A +I L ++ Sbjct: 1 MSEQD-KHSKTEQPTGKRISDAKEKGNIPRSRDLTSTVTLMAGIIALYVTGGFMFSTLKG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LLA + + + L+ L + + ++ P LL+ ++ G+ + + Q + Sbjct: 60 SAKELLAGIATQDMTQAG-VYTLMLKLLFTTTLVLAPFLLVVVVAGLVAEISQGGISTSF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F++++ +G+KR+++ + V +KSF+KI++VG + + + ++ + + Sbjct: 119 EKIGFDFEKLNPVQGVKRLFNKDAAVQVLKSFLKIVIVGYMAYRVMRDEVNNLIYLVDMD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I K+++ + L+VLD+ + ++ LKM+KQE+KDE K S G+P Sbjct: 179 IGGITEFIGHISFKIVLHTCGALFILSVLDLIFVKWRFIENLKMTKQEVKDENKDSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + K + R +M A +++TNPTH+A+AL+Y + + APV++AKG + +A Sbjct: 239 HIKGKIKQKQFEQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGADFLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++IA E NI + E LAR L+ QV IP Y AVA+++ +Y K Sbjct: 299 QRIKEIARESNITLVENRFLARELYAQVKEGEEIPEALYAAVAEILAYVYSLK 351 >gi|299131771|ref|ZP_07024966.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2] gi|298591908|gb|EFI52108.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2] Length = 356 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 192/353 (54%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + ++KT+ P++K++EDA G+ S E + + I + F +T Sbjct: 1 MAE-EGDEDKTQDPTAKRLEDAHKRGDVAKSIEVNTWFMIAGATFIMSSFSGSIANKLTV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL A + K + S ++ L+ L + L ++ +GS+LIQ PV ++ Sbjct: 60 PLKNLLEHAGRMKTDGPS-LLLLVGRLETVMLTALGIPFALLIVAAVGSHLIQHRPVWSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P F ++S G KR++ NF K K+I++G ++ + + + + + Sbjct: 119 DPITPKFSKLSPMSGAKRLFGKQAAANFAKGLFKVIVLGVVMAMVMWPEHERADVMVRID 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +L K++ ++ +A + LD + Y W+ + KMS QE+KDE KQS G+P Sbjct: 179 PSLMLDLTRSMALKLMGTVVAMLAIVATLDYLFQYRSWFERQKMSLQEVKDEYKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R +++ +R+R +MM A A+++ITNPTHYA+AL+Y + AP+ VAKG +LIA Sbjct: 239 HIKGRIRALRVARMRKRMMAAVPTASVVITNPTHYAVALKYERG-MPAPICVAKGVDLIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A H+IP+ E LAR+L V I+ IP Y AVA++I + K Sbjct: 298 FKIREVAAAHDIPVVENVPLARALHASVEIDDEIPVEHYHAVAEVIGYVMKLK 350 >gi|332799194|ref|YP_004460693.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1] gi|332696929|gb|AEE91386.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1] Length = 358 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 1/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL-HVLL 66 + +TE + ++ + A G SRE + +L + + + ++ H+L Sbjct: 8 EERTEKATPRRRQKARERGQVFSSRELNSALVLLGSFLLIKIVGKNFVMNIMDFFNHILT 67 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + + + I + + A + P L + S +Q VL+L V P Sbjct: 68 ETINREDIFTLEGIETFSYEILIFAGKNFAPVALGLSCICLISNYMQVGFVLSLEPVSPK 127 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +R++ EG KRI+S +L+ +KS KI +V ++ ++ + ++ N Sbjct: 128 LERINPLEGFKRIFSRRSLLELIKSIAKITVVAYVVCTAIIKYKDLFPLMLNMNLLDASS 187 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +V + + ++ LD + ++++ + L MSKQ+IK+E K+ GNP IK+R Sbjct: 188 LTLSIAFEVGMKAAATLLIVSALDYFYQWYEYETSLMMSKQDIKEEYKEVEGNPQIKSRI 247 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + R R +MM+ +A ++ITNPTHYA+AL Y + APV++AKG + +A+K+++I Sbjct: 248 RQMQRQMARTRMMKDVEKADVVITNPTHYAVALAYDAALHSAPVVLAKGVDKLAEKIKEI 307 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + ++PI E +LA++L+K V I IP Y AVA+++ IY K Sbjct: 308 ATKEDVPIVENKALAQTLYKTVEIGDIIPESLYNAVAEILAFIYSLK 354 >gi|258624670|ref|ZP_05719605.1| flagellar biosynthetic protein [Vibrio mimicus VM603] gi|258583062|gb|EEW07876.1| flagellar biosynthetic protein [Vibrio mimicus VM603] Length = 375 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ + +KTE S++KI+ A G P +E + + LA ++ L + I+ + Sbjct: 1 MNEH-SSQDKTEQASAQKIKKARQGGQVPRVKEFTTAAIFLA-VVLLFYAQLDHIWQSMA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T++ L + +V L +++P + ++ +GS ++ + Sbjct: 59 GIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ P +++ GIKR++S +LV +KS +K++++ ++ L + +L Sbjct: 119 ANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYLDNHLQPLLGMQRLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + V+DI + ++ +L+MSKQE+K+E KQ+ G P Sbjct: 179 LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQELKEEFKQNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK+R + I + R K+ + A +++TNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + + Sbjct: 299 IHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVLQLR 351 >gi|90415339|ref|ZP_01223273.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2207] gi|90332662|gb|EAS47832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium HTCC2207] Length = 382 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 186/352 (52%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+ + + E P++K++E +G S+E + + ++ +L F S I +T Sbjct: 1 MSDKDSSEEREEEPTAKRLEKGREDGQVARSQELGVAAMMIGVAFFLYLFGSYIIADLTK 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D S +V ++++ +V+P +L ++ I S I + +L Sbjct: 61 VFASGF-TFDRKAVFDTSLLVPAFGIQAVNSFIVVVPIFVLAVIIAIASAGIMGGYIFSL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++ + +V+ K+ K L+ ++ + ++ N+ + + Sbjct: 120 KSLAPKASKINPMAGLKRMFGMKAVVDLSKALSKFALIALVLYLVVSANFPMLTKLGFMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A + +++ L + +DI + H + ++KM+KQE+K+E+K + G P Sbjct: 180 LEPAMAEAGRIIAFGTVLVTLTLIVAAAIDIPYQLHTFNKQMKMTKQEVKEEMKDTEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + R MM A + A ++I NP H+A+AL Y ++N AP++VAKG +L+A Sbjct: 240 EVKAQIRRKQREIATGMMMSAIADADVVIVNPEHFAVALSYDPSKNGAPIMVAKGADLLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K +R+ A E IP+F P LARS+F IN ++P Y AVAQ+I I++ Sbjct: 300 KAIRERAKEEGIPLFSSPVLARSIFYTTEINQSVPESLYYAVAQVIAYIFNL 351 >gi|147678408|ref|YP_001212623.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum thermopropionicum SI] gi|146274505|dbj|BAF60254.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum thermopropionicum SI] Length = 357 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ +TE + ++I++A +G S + + + A + L + Sbjct: 1 MA--GGTQERTEQATPRRIQEARRKGQVARSTDLTGALCLAAMVALLYAVKDEFFLDLQR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + +L L +++L+ P + + ++ + S L+Q + + Sbjct: 59 YLGWYFSQVAGF-IASEEVPGAVLYDTVLFSAKLMAPFIAVPVVTAVVSNLVQVGFLFST 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ G++RI+S +LV +KS K ++G I + N +L + Sbjct: 118 EALNPKLSVLNPATGLQRIFSSRSLVELVKSVFKFTVIGIITYYLIKANLADLLLVFNRP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I + KV + L++LD + +++ L MS+QE+K+E +Q+ G+P Sbjct: 178 PGGIYREVAGFILKVAGWAAVAYLILSLLDYIYQRYEYKKSLMMSRQELKEEFRQTEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+RQ+ + R+ ++++ +AT+++TNPT A+ALRY Q + AP +VAKG IA Sbjct: 238 LIKSRQREMRRAISLNRIISEVPKATVVVTNPTSLAVALRYEQGQMPAPKVVAKGAGRIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++IA EH++PI E +AR ++ V ++ IP Y+AVA+++ +Y K Sbjct: 298 GRIKEIAREHDVPIVENKEIARFIYYNVELDQVIPFEIYQAVAEILALVYRLK 350 >gi|154253017|ref|YP_001413841.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans DS-1] gi|154156967|gb|ABS64184.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans DS-1] Length = 359 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D KTE P+ +K+E+A +G+ S+E S + ++ + S+ Sbjct: 1 MADQDDS-EKTEEPTHRKLEEAHKKGDLVKSQEVSTWFVMIGGATAIALMAPSTASSLMG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L V LA + D H+ + ++ SA +I L + + + +LIQ PV Sbjct: 60 SLTVFLAQPETIPM-DAEHLRRIWLNVGSSAFMSMIGPLAVLVGAALVGHLIQHAPVFTA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++KP ++S +EG++R++ +L+N K +K+ +VG++ + + + ++ Sbjct: 119 ENMKPKLSKISPKEGLQRLFGPKSLMNLAKGILKLTIVGSVSVLIIWPERDRLALMMTWE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +L K+ ++ + + LD + QW K +MS QE+KDE KQ G+P Sbjct: 179 IAQLLPLVQMLALKMFAGVIAVMTVVAALDYLFERMQWMKKQRMSIQEVKDEYKQMEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + I R R +MM A AT+IITNPTHYA+AL+Y Q APV+VAKG + +A Sbjct: 239 TVKAKLRQIRAERGRKRMMAAVPTATVIITNPTHYAVALKYEQG-MGAPVVVAKGVDAVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH +PI E P LAR+L V I+ I P YKAVA++I + K Sbjct: 298 FRIREVGQEHEVPIIENPPLARALHATVDIDQEIQPEHYKAVAEVIGYVMRLK 350 >gi|301165899|emb|CBW25472.1| flagellar biosynthetic protein [Bacteriovorax marinus SJ] Length = 361 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 175/354 (49%), Gaps = 2/354 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+ END+ KTE PS+ +IE+ G S+E + + L+ L +Y V Sbjct: 2 MADENDSDAEKTEDPSAHRIEEFRKRGEVASSKELTSVLVLAGSLMTLGLSMVY-MYEVL 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 S+ L + ++ L + + V P L+ + G+ + + Q + + Sbjct: 61 SEFIEWLYHLDVSTAYTAKSMNTIVNKLVTVSLKSVAPIFLVTLSIGVAANMAQIGVLFS 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++ R++ +GIKR++S+ +LV +K K I + I+ L + T F Sbjct: 121 PDVLEWKPDRINPLQGIKRLFSMKSLVEAIKGVFKFIFILGIVYFFLKDEMHTFGGFFHL 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + + ++ I++ + + + D + + KL M+K+E K E KQ GN Sbjct: 181 DFFQSFLYGKGFLIRLGFAIVVGLIVIAIGDFAYQKFSYKKKLMMTKEEAKQEHKQQDGN 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK R +++ R + ++M +A +I+TNPTH ++AL+Y +P ++AKG +++ Sbjct: 241 PEIKQRIRAVQREMSQRRVMSEVPKADVIVTNPTHISIALKYDPETMISPEVIAKGADVL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+IA H+IPI E LAR L+K V +P YKAVA+++ Y K Sbjct: 301 ALKIREIAKGHDIPIVENVPLARGLYKTVKEGQGVPRNLYKAVAEVLAFTYKLK 354 >gi|254473324|ref|ZP_05086721.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] gi|211957440|gb|EEA92643.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062] Length = 353 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 121/353 (34%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ PD+KT+ P+ KK+ DAL +GN P+S+EAS+ +S+L L+ L F + Sbjct: 1 MSEDQDPDSKTQEPTEKKVRDALEKGNIPVSKEASVLASMLGLLLILSFIAVDKAQGLVQ 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + + + L++ ++ + P + L + FG+ S +Q P L L Sbjct: 61 FLKWFLDNPGEISFVSAAEPLQLMSAVAFELVWFLGPIVALLIFFGLASSFMQNTPRLVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P ++SL++G R++S+N + F+KS K++ V + + L L + ++ Sbjct: 121 DRIEPKLSKISLKKGFGRLFSVNGAMEFIKSLFKLVTVIVVAALVLKSQQAVALTSMYSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L I + L D+ + QW L+MS QE+KDE KQ+ G+P Sbjct: 181 PTQLPQLILSVAMTLLSGICVATIFLVGFDLVLARFQWRKNLRMSHQELKDEFKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +S+AR R R +MM + AT+++ NPTH+A+AL Y + + AP +VAKGQ++IA Sbjct: 241 LIKARLRSLARDRARKRMMSSVQDATVVVANPTHFAVALYYERDGDQAPRVVAKGQDIIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++++AY H++P+ E+ LARSL+ V I+ +IP +Y+AVA++I +Y K+ Sbjct: 301 LKIKELAYIHDVPVVEDRQLARSLYAAVEIDQSIPEEYYRAVAEIISYVYLKR 353 >gi|167626135|ref|YP_001676429.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis HAW-EB4] gi|167356157|gb|ABZ78770.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis HAW-EB4] Length = 377 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 181/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ +KTE + +K++ A +G P S++ + + I+ C + LL + I + + Sbjct: 1 MSNKDSGQSKTEKATPQKLKKAREQGQVPRSKDLASSALIIGCSL-LLTTTADWIAAKVA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S T+ +L++ + L + L ++ P L+ + + + + P+ N Sbjct: 60 AMTRINMSFTKAQLDEPGMMARHLAYSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N+ + R+ G+ R+ S+ +LV +KS +KI+L+ I+ + L +N+ ++ Sbjct: 120 NNANFKYSRIDPIAGLGRMASVKSLVELVKSILKIVLLIGIMLLFLQKNFQALMAVSQLP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + L + +T +D+ + Y + +L+MS QE+KDE KQ G P Sbjct: 180 IDEAVTRGIEMLSLAMFYMGLGLLVITFIDVPYQYWHHHKELRMSLQEVKDEYKQQDGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + + R + + +A +++ NP+HYA+AL+Y + DAP ++AKG + +A Sbjct: 240 EVKAKIRQMQQRISRSRADVSVPKADVLLVNPSHYAVALKYDMNKADAPYVLAKGTDELA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR IA +++ + E P L R+++ + IP + A+A ++ + + Sbjct: 300 LYMRDIAKRNDVEVLELPPLTRAIYYSTQVEQQIPSGLFIAIAHVLTYVMQLR 352 >gi|91976176|ref|YP_568835.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB5] gi|91682632|gb|ABE38934.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisB5] Length = 357 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 187/353 (52%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D + K + P+ K+++DAL G+ S+E + + I + L F VT Sbjct: 1 MSD-DNDEEKQQEPTQKRLDDALKRGDVAKSQEVNTWFVIAGATLLLSSFSGSIGTGVTG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+ + K++ + + L + S L +P LL M+ IGS LIQ V + Sbjct: 60 PMRALIEKSWMLKVDGAGLLALTKSLLLMLVSVLGVPLFLL-MLVAIGSNLIQHRLVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++S EG KR++ L NF+K K+I +G ++ L + + + Sbjct: 119 EGLTPKLSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S+L K++ + +A + D + Y W+ + KMS QE+KDE KQS G+P Sbjct: 179 VVSLLGVTVGLTLKLMGSVAAVLAFVAAGDYFFQYRTWHERQKMSLQEVKDEYKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I R++ +MM A A+++ITNPTH+++AL+Y + AP+ VAKG + IA Sbjct: 239 HIKGRIRQIRYQRMKKRMMAAVPSASVVITNPTHFSVALKYERG-MQAPICVAKGADAIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A +N+PI E LAR+L+ V ++ IP Y AVA++I + + K Sbjct: 298 FKIREVAKANNVPIVENVPLARALYATVEVDGEIPIEHYHAVAEVIGYVMNLK 350 >gi|212637760|ref|YP_002314285.1| flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3] gi|212559244|gb|ACJ31698.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3] Length = 393 Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 182/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ +KTE + +K++ A +EG P S++ + + I+ C + L + I + + Sbjct: 17 MSNKDSGQSKTEQATPQKLKKAKSEGQVPRSKDLASSALIIGCSLMLT-TSADWIAAKVA 75 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T+ +L++ ++ L L ++ P L+ + + + + P+ N Sbjct: 76 KMTRTNMSFTKAQLDEPGMMMRHLGQSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 135 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ GI R+ S+ +LV +KS +KI+L+ I+ + L +N T+L F Sbjct: 136 KNAAFKYSRIDPIAGIGRMASVKSLVELVKSILKIVLLMGIMWLFLEKNLQTLLSFNQLP 195 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + L + +T +D+ + Y +++LKMS QE+KDE KQ G P Sbjct: 196 VDEAVSKGIEMLSLGMFFLGLGLLLITFIDVPYQYWHHHNELKMSLQEVKDEHKQQDGKP 255 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + + R + + +A +++ NPTHYA+AL+Y + DAP ++ KG + +A Sbjct: 256 EIKAKIRQMQQRISRSRADISVPKADVLLVNPTHYAVALKYDIDKADAPYVLTKGTDELA 315 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A H++ + E P L R+++ ++ IP + A+A ++ + K Sbjct: 316 LHMREVAKRHDVEVIELPPLTRAIYYSTKVDQQIPAALFIAIAHVLTYVLQIK 368 >gi|294339803|emb|CAZ88166.1| Flagellar biosynthetic protein FlhB [Thiomonas sp. 3As] Length = 373 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K S K+ + A +G SR+ + S +L + +++ Y + Sbjct: 1 MAE-DSAQEKELPASQKRKQQAREKGQVARSRDLTS-SLLLLGMAAVVYTAGGWFYDMGR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + +D + ++ + + ++ P L L + + V + Sbjct: 59 ELLQTGLTVSASASQDPAAMLQAAGRVLVLGLIVLAPVLALTFVASAAGGVAMGGWVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+ +GI R++SI L K+ +K I++ I I + +L + Sbjct: 119 EALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVIWNERGELLGLLQVE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + + + +D+ W Q KLKMS+Q+++DE+++S GNP Sbjct: 179 PQLAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKLKMSRQDLQDEMRESEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R R R +MM A +A +++TNPTHYA+AL Y + +N APV++A G + +A Sbjct: 239 QIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYKEGKNRAPVVLALGADRVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+L+ + IP Y AVA L+ ++ + Sbjct: 299 ARIREVAAEHNVPVIEAPPLARALYHHAELEQEIPVALYNAVALLLAYVFQLR 351 >gi|54297699|ref|YP_124068.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str. Paris] gi|53751484|emb|CAH12902.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str. Paris] Length = 382 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ + +L + F + S Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + L ++ + L L+ S V+P LL+ + + + L+ V + Sbjct: 61 IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R+++ +G KR+ S+ V +K+F+K +LV + + L +L+ A Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A Sbjct: 240 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ + Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352 >gi|317129190|ref|YP_004095472.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM 2522] gi|315474138|gb|ADU30741.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM 2522] Length = 359 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 168/346 (48%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +++ +G S + + +L + S + + Sbjct: 12 QEKTEKATPKKRKESRQKGQVSKSSDVNTSFILLFVFLAFWLMGSFSVDQLIGITRYSFQ 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +L + +++ + + S+ A+ +V P + + M+ I S +Q + +K Sbjct: 72 EYLLMELTE-ANVYSMFINFSIQAAIVVGPFMFIAMLAAIFSNYLQVGILFAPEAIKMKL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++ +G KRI+S+ LV F+KS +KI+ VG + +L + + Sbjct: 131 SKLDPIQGAKRIFSVRALVEFLKSLLKIVCVGFAGFTVIWIAIDDILMLSLYSVGESVRL 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + + + L+V D + + +KMSKQ++KDE K++ G+P+IK++ K Sbjct: 191 IGNLLIMMGLAVAFLLIFLSVFDYLYQKYDHEKNIKMSKQDVKDEYKKTEGDPLIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM +A ++ITNPTHYA+AL+Y AP++VAKG + IA K+ IA Sbjct: 251 EKQRQMAMSRMMAEVPKADVVITNPTHYAIALKYDDQNMAAPIIVAKGVDFIALKVINIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +N+ E LAR+L+ Q I +P +KAVA+++ +Y + Sbjct: 311 KNNNVMTVENRPLARALYAQADIGDPVPEDLFKAVAEVLAYVYRIQ 356 >gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] Length = 614 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 189/347 (54%), Gaps = 1/347 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 D KTE + KK D+ +G S++ L +++A ++ ++ + S+ ++ Sbjct: 261 GADEKTEEATPKKKSDSRKKGQIARSKDVGLAITMIATVLVVVALSGFIVSSLKDNVVYF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L ++ + + I + T + A+ +++P +L M+ G+ + L+Q ++ + +KP Sbjct: 321 LGDMGSMEVTE-NSIKGINTLIISKAAMVIMPVILPIMIAGVAASLVQSGFLVVKDAIKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 SF +++ G K ++S +LV +K+ + I +V I + +N+ ++ + ++ Sbjct: 380 SFGKLNPINGFKNMFSKKSLVELIKNLILIAIVIFIAYSYIRDNFDKIMQIGNLYLPTLG 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + I + + + ++D Y + ++M+KQEIK+E KQ G+P IK++ Sbjct: 440 IEVKSLIVGIFVKICILLVVIAIIDYVVQYMLFQKDIRMTKQEIKEEYKQMEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R + +MM++ AT++ITNPTH A+A++Y + + +AP +VAKG + IA K+++ Sbjct: 500 IKQRQREMSQRRMMQSVGDATVVITNPTHLAVAIKYEEGKTEAPKVVAKGADTIAIKIKE 559 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A E +PI E LAR +F+ V I+ IP Y+AVA+++ +Y Sbjct: 560 KAIESKVPIIENKPLARMIFESVEIDKEIPQDMYQAVAEVLAMVYKL 606 >gi|254517020|ref|ZP_05129078.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3] gi|219674525|gb|EED30893.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3] Length = 384 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E +TE P+ ++ E+A +G P SRE + S+L + L + ++ + Sbjct: 1 MAEEQTGQERTEQPTERRKEEARRKGQVPRSRELNTMLSLLITGVGLWVLGGGLVDNLLA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 S + + D + H+ +SA + P + ++ + LI +L Sbjct: 61 ITSAGF-SVDRAAVFDTQQLPVHFMHMVISALLALAPLFAVTVVAALAGPLIMGGWSFSL 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +++ +G+ R++S+ L K+ +K +L+ + + + +L + Sbjct: 120 EAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMGVAYLMIMSFERQILTLSALT 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + LI++ + + + D+ + + +L+M++QE++DE+K++ G P Sbjct: 180 PGEASARVVTMLVTALIILSSAMVLIVMFDVPFELWNFNKQLRMTRQEVRDEMKETDGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +++ R + +MM+ A ++ITNPTHY++AL Y + AP +VAKG++LIA Sbjct: 240 EVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHYSIALSY-SDGSGAPRVVAKGRDLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R IA EH +P++E P LAR+L+ + IP Y AVA+++ ++ + Sbjct: 299 LQIRTIAQEHEVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQLR 351 >gi|92116950|ref|YP_576679.1| flagellar biosynthesis protein FlhB [Nitrobacter hamburgensis X14] gi|91799844|gb|ABE62219.1| flagellar biosynthetic protein FlhB [Nitrobacter hamburgensis X14] Length = 359 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+++DAL G+ S+E + + I + L F V Sbjct: 1 MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLATFGGSVGGGVEM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+A++ Q + D ++ L L + + LL+ M+ I ++Q V + Sbjct: 61 PLRNLIANSWQIR-TDGPGLLALAQQLEYILAAALGLPLLMLMLAAIAGNVVQHRFVWSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++S+ G KRI+ NF K K++ +G ++T L + + + Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDALVRLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P++IL ++L ++ +A + + D + Y QW+ + KMS +E+K+E KQS G+P Sbjct: 180 PNAILPTTTTLTLQLLGAVVAMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + +R++ +MM A +A++IITNPTHY++AL Y + APV VAKG + IA Sbjct: 240 HIKARIRQLRHARMKKRMMAAVPKASVIITNPTHYSVALSYERG-MSAPVCVAKGMDNIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+IPI E LAR+L+ V I+ IP Y AVA++I + K Sbjct: 299 LKIREIAREHDIPIVENVPLARALYATVKIDDEIPVEHYHAVAEIIGYVMGLK 351 >gi|54294673|ref|YP_127088.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str. Lens] gi|53754505|emb|CAH15989.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str. Lens] Length = 382 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ + +L + F + S Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + L ++ + L L+ S V+P LL+ + + + L+ V + Sbjct: 61 IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R+++ +G KR+ S+ V +K+F+K +LV + + L +L+ A Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A Sbjct: 240 EVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ + Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352 >gi|225569959|ref|ZP_03778984.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM 15053] gi|225161429|gb|EEG74048.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM 15053] Length = 353 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 182/347 (52%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK D EGN S + + L F + + + Sbjct: 2 AADSKTEKATPKKRRDERKEGNIFQSSDVVNVVFVFLSFYILKLIFPGIYETSGNFMKRF 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 ++ A + +A+R V+P + M+ GI + IQ + + +P Sbjct: 62 ISLAGSITDLSGQSVGKYGMEFLSAAARTVLPFACICMVTGIVMHGIQTRFLFTSKNFRP 121 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R+S +GIKRI+++ N + +K+ +K+I++ II L ++ ++ + + + Sbjct: 122 KLNRISPLQGIKRIFALKNAIELVKNLLKVIVLVAIIYTLLKQDAVNVIRTMDMSISASA 181 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + F + +++ + + A + LD + + + K+KMSKQE+K+E KQ+ GNP IK R Sbjct: 182 AYTFDMIISMILRVSMVFAVIAFLDYLFQWWDYERKIKMSKQEVKEEFKQTEGNPEIKGR 241 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + I + R R +MM+A A +II NPTH+A+AL Y +N+APV+VAKG + +A ++ + Sbjct: 242 IRDIQKQRARSRMMQAVPNADVIIRNPTHFAVALSYDTEKNNAPVVVAKGVDELALRIVR 301 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 E+++ + E+ LARSL+ + +N IP +Y AVA+++ +Y Sbjct: 302 TGEENHVAVIEDRPLARSLYAETELNREIPSEYYGAVAEILVYVYKL 348 >gi|84502407|ref|ZP_01000543.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis HTCC2597] gi|84389219|gb|EAQ02016.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis HTCC2597] Length = 374 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 108/357 (30%), Positives = 195/357 (54%), Gaps = 4/357 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ NKTE P+ +K+ A +G+ P SRE S+++ + +FF ++ Sbjct: 1 MAENEDQTNKTEEPTPRKLRQAREKGDVPSSREVGNMMSVMSLFLVAIFFLPQLGPTLVG 60 Query: 61 DLHVLLASATQRKL----EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L + +A Q ++ + + + + LS + ++ P ++ + + LIQ Sbjct: 61 TLRRVFENAGQVRIGEDVQGLRDLGQVTMELSGGLATVLAPVAATMLLAAVAAVLIQGEV 120 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V+ ++ + P +++ +G K+I+SI++ V F+KS K+++VG I + Sbjct: 121 VVAVDRITPKLSKINPIQGFKKIFSIDSFVEFLKSVAKVLVVGGISIYIAQIAVRGIWQT 180 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P S+L + +LI + L + L+V D+ W QW K +MS QEI+DE K+ Sbjct: 181 EGVTPESVLSYIGRYAALLLITVTLLLTVLSVADVMWKRFQWMKKQRMSVQEIRDEHKEM 240 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P+I+ ++ R R + ++ A +AT+++TNPTH+A+ALRY + APV VAKG Sbjct: 241 EGDPLIRAKRAEQRRKRAQQRITTAVPQATVVLTNPTHFAVALRYDNGTDQAPVCVAKGV 300 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +L+A ++RK+A E+ +P+ E LAR+L+ I+ IP ++AVA++I + K Sbjct: 301 DLMAAQVRKVARENEVPVVENKPLARALYDVAEIDEEIPFEHWQAVAEIIGYVMDLK 357 >gi|326791523|ref|YP_004309344.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM 5427] gi|326542287|gb|ADZ84146.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM 5427] Length = 372 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 176/349 (50%), Gaps = 1/349 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE + KK EDA +G S E + I+ L + + + + Sbjct: 16 ESEGRTEKATPKKKEDARKKGQVAKSAELNTAVLIVGFCAVSLLLGGYMLSGIQTSIITS 75 Query: 66 LASATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + ++ E S+ ++ + + +P + + G IQ ++ +K Sbjct: 76 MNRLSEVFNEVTSNYMLVVFRSAIFDILWICLPLWICLFIIGFIVSYIQVGYKVSFEPMK 135 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F +++ GIKRI S + +V+ + S K+I++G I+ + + F I Sbjct: 136 VKFSKMNPINGIKRIISKDMIVSLILSAAKVIVLGAIVYNIILSKIPIFMRFYELTIEQI 195 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L TV ++ + L VLD + ++ +KM+KQEIK+E K + G+P IK+ Sbjct: 196 LNTIAMTVVQIGFFVGGAFLVLAVLDYVYQRYKHADSIKMTKQEIKEEYKNAEGDPQIKS 255 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + K R +MM+A A +IITNPTH+A+A++Y +++ APV+VAKG + +A+K++ Sbjct: 256 KIKQKMREGSMRRMMQAIPEADVIITNPTHFAIAIKYDESKGTAPVVVAKGVDYVAQKIK 315 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + A EH+I I E LAR+L+ V +N IPP Y AVA+++ IY+ + Sbjct: 316 EKAKEHHIEIVENKPLARALYYTVDLNKEIPPELYGAVAEVLAFIYNLQ 364 >gi|148359330|ref|YP_001250537.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby] gi|296107377|ref|YP_003619077.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99 Alcoy] gi|148281103|gb|ABQ55191.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby] gi|295649278|gb|ADG25125.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99 Alcoy] Length = 382 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ + +L + F + S Sbjct: 1 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + L ++ + L L+ S V+P LL+ + + + L+ V + Sbjct: 61 IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R+++ +G+KR+ S+ V +K+F+K +LV + + L +L+ A Sbjct: 120 QSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A Sbjct: 240 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ + Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352 >gi|58579708|ref|YP_198724.1| type III secretion system protein HrcU [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424302|gb|AAW73339.1| HrcU [Xanthomonas oryzae pv. oryzae KACC10331] Length = 423 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 8/349 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE KTE P+ KK+ DA +G P+S + + + + L+ + + + + Sbjct: 65 MSE-----EKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRA 119 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D + I L H+ + L++P L ++ G+ Q +L Sbjct: 120 LTRIGFD--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASL 177 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ Sbjct: 178 KPVSPKFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYET 237 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I A+ T+ + + +L + D + + +MSK E K E K+S G+P Sbjct: 238 PLDISQIAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDP 297 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK ++K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A Sbjct: 298 EIKGKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGA 357 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 ++R A+ IPI P LAR+L+ QV + AIP ++ VA ++ + Sbjct: 358 LELRAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 405 >gi|261341518|ref|ZP_05969376.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] gi|288316316|gb|EFC55254.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC 35316] Length = 377 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 178/353 (50%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ A +K+E P+++K+ A +G+ P S++ ++ +LA I + FF Y Sbjct: 1 MA---AGGDKSEKPTAQKLRKAREKGDLPRSKDLTMAVGLLASFITMGTFFP--YYKTLV 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +L+D + L R +I L + I + L+ V + Sbjct: 56 EESFTSVGMMAGRLDDQGALSQFLMLNVWVIIRFII-TLAPIPLACIVASLVPGGWVFTV 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP FK++S G+KR++S ++ V+ K +K ++ ++ + + +L + Sbjct: 115 SKLKPDFKKLSPISGVKRMFSSSHYVDVGKMMLKCGIILAVLYTMVHSSLNPLLHLQRLS 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++H F + VL+ + I +LD+ + + K++M+KQE+K+E K + GNP Sbjct: 175 LSQAIHHGFGILHHVLVYFIAVIVIFALLDVPLAKFMFTKKMRMTKQEVKEEYKNNDGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R ++ A +IITNPTHYA+AL+Y + +AP +VAKG + IA Sbjct: 235 QIKGRIRQLQRQMAMGQINRTVPEADVIITNPTHYAVALKYDPKKAEAPYIVAKGMDDIA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R +A H I + E P LAR+++ +N IP ++A+A ++ + K Sbjct: 295 LHIRDVARHHQIEVVEFPPLARAVYHTTRVNQQIPAQLFRAIAHVLTYVMQIK 347 >gi|189426336|ref|YP_001953513.1| flagellar biosynthesis protein FlhB [Geobacter lovleyi SZ] gi|189422595|gb|ACD96993.1| flagellar biosynthetic protein FlhB [Geobacter lovleyi SZ] Length = 357 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 184/355 (51%), Gaps = 3/355 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D +KTE P+ +++E A +G P S+ S ++LA ++ L S + + S Sbjct: 1 MAEDDDKHSKTEQPTGRRLEKAREKGAPPSSQMLSQSFTLLAGIVVLYLLGSYLMNGLKS 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + +L + ++ ++ + L+ P +L M GI ++++Q L+ Sbjct: 61 TTVQVYSQIGTFELTE-QNVYTMMLRIFGVLFMLLAPVILAVMSTGILAHIVQDNGRLDF 119 Query: 121 NH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + +++ G ++++ LV +KS +KI ++G I L + + Sbjct: 120 QWGRITFDISKLNFISGFGKLFNKEALVEILKSLIKIFVIGWIAYQVLRDELQNITVLAE 179 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 ++ + IL + K++ + +++LD+ + ++ LKM+KQE+KDE K G Sbjct: 180 SDVNGILSYTGHVAFKIVTHTCGIMIVISILDMAYVKWRYIENLKMTKQEVKDETKDMEG 239 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP IK + K + R ++ + A ++ITNPTH+A+AL+Y ++ AP+++AKG + Sbjct: 240 NPEIKGKIKRLQFQAARRRLTKIIPTADVVITNPTHFAVALKYDRSRMVAPMVIAKGADE 299 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A ++++A EH + + E LAR L+ QV N IP Y AVA+++ +Y K Sbjct: 300 MALAIKEMAREHKVTLVENRFLARELYDQVAENQEIPESLYAAVAEVLAYVYRLK 354 >gi|114777581|ref|ZP_01452562.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1] gi|114552052|gb|EAU54569.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1] Length = 355 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 173/353 (49%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ +TE + K+ EDA +G S+E S + + ++ Sbjct: 1 MADEQDKSQQTEEATPKREEDARKKGQIATSKEPSTAIAFTVISLIVITGLGSWFGEQMQ 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + LL + +V+P + M+ G+ + PV Sbjct: 61 HMLTNYLSGAVHIKATGEGMQKLLISAVTDMAMVVLPIAVPIMLLGLLVTFMVSGPVFTF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F+++S +GIKR++S L F+KS +K++L+ ++ + +L + Sbjct: 121 ETMIPKFEKISPLKGIKRLFSTKALAEFIKSVLKLVLISVACATIVSGMFSEILHTALKD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I F K+ ++ + + + D+ + + L+MSK+E +DE K S G+P Sbjct: 181 PADIAALTLFGSVKITTLVAVIFVVIALADVLYQRWEHAKSLRMSKKEQRDEHKDSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + I + +++MM A +IITNPTH ++AL Y AP ++AKG+ +A Sbjct: 241 QLKAKIRQIQMQQAQNRMMSDVPDADVIITNPTHISIALAYDPLSPGAPRVLAKGKGHLA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EH+IP+ E LARSLFKQV + IP V ++A+A ++ +I+ K Sbjct: 301 AKIREIAREHHIPMRENKPLARSLFKQVKVGDEIPEVLFEAIAIILAEIFRLK 353 >gi|86750881|ref|YP_487377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris HaA2] gi|86573909|gb|ABD08466.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris HaA2] Length = 358 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 190/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+ K E P+ K+++DAL +G+ S+E + + +I + L F +T Sbjct: 1 MSD-DSDQEKQEEPTQKRLDDALEKGDVAKSQEVNTWFAIAGATLLLSSFSGSIGSGITG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L+ + ++ + + + L + S L +P L L + IGS LIQ V + Sbjct: 60 PMRTLIEKSWMLPVDGVGLLALTKSLLLMLISVLGVP-LGLLALVAIGSNLIQHRLVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F ++S EG KR++ L NF+K K+I +G ++ L + + + Sbjct: 119 EGLKPKFSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S+L K++ + +A + D + YH W + KMS QE+KDE KQS G+P Sbjct: 179 VVSLLGVTVSLTLKLMGTVAAVLAFVAAGDFFFQYHTWRERQKMSLQEVKDEYKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I R++ +MM A A+++ITNPTH+++AL+Y + AP+ VAKG + IA Sbjct: 239 HIKGRIRQIRYQRMKKRMMAAVPGASVVITNPTHFSVALKYERG-MQAPICVAKGADAIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A +++PI E LAR+LF V ++ IP Y AVA++I + + + Sbjct: 298 FKIREVAKANDVPIVENVPLARALFATVEVDEEIPVEHYHAVAEVIGYVMNLR 350 >gi|149189857|ref|ZP_01868137.1| flagellar biosynthetic protein [Vibrio shilonii AK1] gi|148836343|gb|EDL53300.1| flagellar biosynthetic protein [Vibrio shilonii AK1] Length = 375 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE S +KI+ A EG P ++E + L IY I+ S Sbjct: 1 MSEQ-SSQDKTEKASPQKIKKARQEGQIPRAKEFTTAVLFLIVAIYFYSQIGR-IWEHIS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T++ LE+ ++ L L++P ++ ++ IGS +I + Sbjct: 59 GVFRFNMALTRQDLENPKQMIEQLGQSLGIIIELLLPMFMVIVIAAIGSSMILGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +++P +++ G+ R++S +LV +KS +K+ ++ ++ L N+ +L Sbjct: 119 ANIQPKLSKLNPISGVGRMFSTRSLVELLKSSLKVTVIFALLYTYLDSNFSQLLGMQKLT 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L+++ + + V+DI + + +LKM+KQE+K+E K + G P Sbjct: 179 LSQGITMVMTILFEGLLLMGVALLIFGVIDIPYQRWEHLKQLKMTKQELKEEYKNNEGCP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ +A +A ++ITNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKAVPKADVVITNPTHYAVALKYDTSLSDAPFVVAKGIDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + K Sbjct: 299 MHIQRIARENQVEILHSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVMQLK 351 >gi|57168473|ref|ZP_00367607.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228] gi|305432892|ref|ZP_07402050.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20] gi|57020281|gb|EAL56955.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228] gi|304444046|gb|EFM36701.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20] Length = 362 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 187/351 (53%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF +T+ Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIVGFVITLFMMGFIGERITN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ L+ P +L M+ GI ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLILLAPIVLSIMIAGILGNVMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ LV +K +K+ +V T+ I L + + N Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKLVESVKIVLKVGVVFTVAFIVLLKFMQELPLVERYN 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++++ + VLDI Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 IIGQLIWLRDRAIILAAIVIIAFLVIAVLDIFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY T+ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTTKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AY++N+ ++E P LAR L+K IN IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYDNNVVVYENPPLARELYKACDINDLIPREMFKAVAEVLGFVYN 347 >gi|257095372|ref|YP_003169013.1| flagellar biosynthesis protein FlhB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047896|gb|ACV37084.1| flagellar biosynthetic protein FlhB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 379 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 169/352 (48%), Gaps = 3/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ +TE S++++E A EG P SRE F ++ F + + + Sbjct: 1 MAE-ESDLERTEPASARRLERAREEGQVPRSREVGAFLILIVAAAAFWFIGPWMVQRMAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LA + ++ L LS A V P + ++ + S + Sbjct: 60 VFRRGLA-FDHGLTREPQLVLVRLADLSADALLSVAPLFVALLVAALLSPFFVGSWNFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+ +G+ R+ S + L +K+ K +LVG + L +L + + Sbjct: 119 KALQPDLSRLDPLKGLSRLVSWSGLAELVKAVAKALLVGGVAVGVLWSERGDLLAMFAQS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A + + I+ + + +D+ + Q++ KLKMS+QE+K E K+ GNP Sbjct: 179 GQLGLVSAGHLLSFSFLAIVSAMLLIVAIDVPFQLWQYHDKLKMSRQEVKQESKELEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R R +MM A A +I+TNPTHYA+AL Y AP ++AKG +A Sbjct: 239 EIKGRIRQLQREAARKRMMAAVPAADVIVTNPTHYAVALAYSSG-MRAPKVLAKGMGEVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R++ E+ IP+ E LAR+L + V ++ IP Y AVA+++ +Y Sbjct: 298 LKIRQVGAENGIPMIEAAPLARALHRHVELDREIPAGLYAAVAEVLAYVYQL 349 >gi|34496481|ref|NP_900696.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] gi|34102335|gb|AAQ58701.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] Length = 388 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ +TE S+K++ A +GN P S+E S F+ + + L+ +++ Sbjct: 1 MAE-DSDLERTEPASAKRLSMAREDGNIPRSKELSTFAVTMTGVALLMAMGGQLGHALGE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + Q +++ + A + P + + + ++ + Sbjct: 60 IMRHLF-TFDQATVQNTEPALIRFKESLFQALGALAPFFGGLALAALLAPMLVGGWNMTF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P+F +++ GIKR++S+N +K+ +K +L+G I T + ++ ++ Sbjct: 119 KALEPNFGKLNPLPGIKRLFSLNAATEGLKAILKSLLIGGIATWYIWRERGEIIGLLAMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + ++ + L LD+ + +Y KL+M+K+E+K E K++ G+P Sbjct: 179 LEAGILKMTDLMIRTFFIVTSALILLVALDVPYQLWSYYKKLRMTKEEVKQEYKEAEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R R +MM+ +A +I+TNPTH+A+AL+Y AP +VAKG ++A Sbjct: 239 EVKGRIRQMQREAARKRMMQEVPKANVIVTNPTHFAVALKYD-DTMRAPQVVAKGSLILA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+ E +PI P AR+L+ + IP Y A AQ++ ++ + Sbjct: 298 EKIIDTGKESRVPIMRSPRFARALYFHAELGQDIPAQLYAAAAQVLAYVFQLR 350 >gi|52842013|ref|YP_095812.1| flagellar biosynthesis protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629124|gb|AAU27865.1| flagellar biosynthetic protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 383 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PSSK+++++ +G S++ + +L + F + S Sbjct: 2 MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 61 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + L ++ + L L+ S V+P LL+ + + + L+ V + Sbjct: 62 IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R+++ +G+KR+ S+ V +K+F+K +LV + + L +L+ A Sbjct: 121 QSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + K ++I + + +D+ + ++ +KM+KQE+KDE K++ G P Sbjct: 181 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ + + R +MM +A +I+TNPTHYA+AL Y + APV++AKG+NL+A Sbjct: 241 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ K+A EH IPI P+LAR+++ +N+ IP Y AVAQ++ I+ + Sbjct: 301 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 353 >gi|115523175|ref|YP_780086.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisA53] gi|115517122|gb|ABJ05106.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisA53] Length = 358 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 120/352 (34%), Positives = 217/352 (61%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ ++KTE P+ KK+ D++ +G P+SRE ++FSS++A L+ L F + ++T Sbjct: 1 MSDAPEKESKTEEPTEKKVRDSVEKGQIPVSREVAIFSSMIALLLILSFLTGDKLTALTK 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ + +++ + + L+T + +S++R V+P +++ + G+ S +Q +P + Sbjct: 61 ALAGLIDDPSGVRIKTGADAIELITAIGVSSARFVLPIVVVLSLAGLASSFLQNVPRIVA 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P R+S+ +G +RI+ V F KS K I + ++ I L ++ + + Sbjct: 121 DRIEPKLSRISIAKGWERIFGAQGRVEFAKSVFKFIAISIVVAIVLKAEEAATVNALFGD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ T +++ I + L LD+ W+ W L+M+KQE+KDE KQ+ G+P Sbjct: 181 PTAVPELVLTTAMQLVSAISIATIVLVALDLVWARFHWRQDLRMTKQELKDEFKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +SIAR R R+ M+ A RAT++I NPTHYA+AL+Y E+ AP ++AKGQ+LIA Sbjct: 241 IVKSRMRSIARDRARNAMLAAVPRATLVIANPTHYAIALKYQHGEDPAPTVLAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA ++N+P+ E+ LAR+++ I+ IP F++ VA++IY ++ + Sbjct: 301 LKIREIAEQNNVPVVEDRMLARAMYDAAQIDRVIPAEFFRPVAEIIYFLHSR 352 >gi|313905147|ref|ZP_07838516.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6] gi|313470050|gb|EFR65383.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6] Length = 354 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 171/353 (48%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ +D KTE P+ K+ +A EGN S++ + +LA + L + ++ S Sbjct: 1 MANDD----KTEQPTEKRKREAREEGNVFHSKDIVTVAVLLAGTMILRLRITDIQTTIKS 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L +S L+ +L A+ +P L + Q Sbjct: 57 MFFEVLNLMKGSTQNMLSR--HLMVSFALDAAVCALPIGLAAAFIEFVAGGAQTRFNFAK 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP KR++ G+KR++S+ +V +K+ K +++ + + L ++ + I Sbjct: 115 KALKPQAKRMNPLNGLKRMFSLKGVVEALKNIAKTVVLVVFVYLILKDDIVPIAKMIDEP 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F + +++ I L + + D + HQ+ L M+KQE+KDE K + GNP Sbjct: 175 ISQANSQLFSMMFNLVLRICLAFSVIAAFDFMFQKHQYKKSLMMTKQEVKDEYKNTEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R K R + +M++ A +II NPTH A+A++Y +APV++AKG + +A Sbjct: 235 EIKGRIKKKQREIAQRRMIQQVPSADVIIRNPTHVAVAIKYDPERAEAPVVLAKGVDSVA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ ++ E+ +P E LAR+L+ +N IP +Y AVA+L+ IY ++ Sbjct: 295 LRIIEVGEENGVPWIENKPLARALYGACELNDQIPSEYYGAVAELLVYIYKQQ 347 >gi|182679720|ref|YP_001833866.1| flagellar biosynthesis protein FlhB [Beijerinckia indica subsp. indica ATCC 9039] gi|182635603|gb|ACB96377.1| flagellar biosynthetic protein FlhB [Beijerinckia indica subsp. indica ATCC 9039] Length = 360 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 132/353 (37%), Positives = 210/353 (59%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D++TE P++KK++DA+ +GN PISRE +F+S+L+ LI F + + + Sbjct: 1 MAEKPDQDSQTEEPTAKKMDDAIEQGNLPISREMIIFASMLSLLIVNAFILRNSLADIVT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + ++ Q L + V L + ++P +L FM+ GI + + Q L L Sbjct: 61 LLKYVFNNSDQIPLRNQLDAVNLFQLILTETGPRLVPIILPFMIAGIAANIGQSKLRLIL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +SL G K+++ NL F+K+ +K+ V ++ + L N +++ + + Sbjct: 121 ERIQPDFGHLSLISGWKKLFGQKNLAEFLKNVIKLSAVALLLFMVLKGNQDKLINAMFLD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +I ++L +I + L D+ W +QW L+MSKQEIKDE+KQ G+P Sbjct: 181 PSAIPELILSLSMRLLSVICIVTIVLATADLLWVKNQWRRDLRMSKQEIKDELKQMEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R +S+A RIR M+ +AT++I NPTH+A+ALRY++ E PV+VAKG +LIA Sbjct: 241 LIKARLRSVALDRIRKSMIADVPKATVVIANPTHFAVALRYVREEGGTPVVVAKGTDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA HNIPI E+ LARSL V +N AIP FY+A+A++I+ + KK Sbjct: 301 LKIREIAEAHNIPIVEDRPLARSLHASVEVNQAIPAEFYRAIAEIIHYLNTKK 353 >gi|78224286|ref|YP_386033.1| flagellar biosynthesis protein FlhB [Geobacter metallireducens GS-15] gi|78195541|gb|ABB33308.1| Flagellar biosynthetic protein FlhB [Geobacter metallireducens GS-15] Length = 353 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 186/353 (52%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D +KTE P+ K++++A +G P SR+ + +++A ++ L ++ S Sbjct: 1 MSEED-KHSKTEQPTPKRLDEAKKKG-VPHSRDLTSTVTLIASMVALYTTGGFMFTTLKS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S +L + S + LL L L ++V P +L+ ++ G+ + + Q +N Sbjct: 59 TTSEIFGSMGTFQLTE-SSVEMLLVKLFLVMLQVVGPFMLVVVIVGLFTTVAQVGFSMNA 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++++ E ++++ ++ + K+ +KI++VG + + + ++ + Sbjct: 118 ERIAFKPEKLNPAENFGKLFNKDSFMEMAKATLKILIVGYMSYKIMRDELDGIIYLTDTD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 IL K++I + L ++D+ + ++ + KM+KQE+KDE K+S G+P Sbjct: 178 LSGILELFKHLCFKLVIHTCGVLLILGIVDLVFVKWRFIERQKMTKQEVKDEHKESEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + + + ++ A ++ITNPTH+A+AL+Y + AP ++AKG + +A Sbjct: 238 KVKGKIRQMQFQQAQRRLRAVIPTADVVITNPTHFAVALKYDRLTMAAPTVLAKGADHMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + ++ +A E+N+ + E LAR L+ QV IP Y AVA+++ +Y K Sbjct: 298 QTIKAMARENNVMLVENRFLARELYAQVKEGEEIPEALYAAVAEVLAYVYSLK 350 >gi|157147128|ref|YP_001454447.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC BAA-895] gi|157084333|gb|ABV14011.1| hypothetical protein CKO_02905 [Citrobacter koseri ATCC BAA-895] Length = 377 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 169/349 (48%), Gaps = 3/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +K+E P+ K+ A +G+ P S++ ++ + +LA L F + Sbjct: 2 SSSGDKSEKPTPGKLRKAREKGDLPRSKDLTMAAGLLASFFTLAAFLPYYQQLIRESFAA 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + A + L+D + + + R + L+ + I + L+ + +K Sbjct: 62 VGEMAGR--LDDPTALNQFMLLNVWVVLRFIA-TLIPIPLCCIVASLVPGGWIFTPTKLK 118 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P FK++S GIKR++S ++ K +K ++ T++ + + ++ +L Sbjct: 119 PDFKKLSPISGIKRMFSASHYTEVGKMLLKCGIILTVLYMMVHDSMHALLHLQQLYLRQA 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + F R V + I +LD+ S + K++M+KQE+K+E K + GNP IK Sbjct: 179 IGQGFAIFRHVFSYFIAVIVIFALLDVPLSKFMFTKKMRMTKQEVKEEYKNNDGNPQIKG 238 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + + R ++ A +IITNPTHYA+AL+Y +AP +VAKG + +A +R Sbjct: 239 RIRQLQRQMAMGQIARTVPTADVIITNPTHYAVALKYDPQRAEAPYIVAKGIDDVALWIR 298 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ HNI + E P LAR+++ +N IP ++A+A ++ + K Sbjct: 299 EVGANHNIEVVEFPPLARAVYYTTRVNQQIPTQLFRAIAHVLTYVMQLK 347 >gi|319781693|ref|YP_004141169.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167581|gb|ADV11119.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 360 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 219/353 (62%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D+KTE + KKI D + +G P SRE +LF+S +A L++ +F+ I + Sbjct: 1 MADAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALFASFVAILVFTVFYAKDAIIDLGM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + L ++ + ++ L + L R V+ ++L + G+G+ + Q +P Sbjct: 61 FLSMFLEKPEAWPMDTETDVIALYKIVLLEVGRAVLSLMVLLTVAGVGASVFQNMPQFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V+P R+S+ +G R++ I V F+KS K+ +++ +L+E++ +L + N Sbjct: 121 ERVRPQLSRISIAKGWNRLFGIQGWVEFLKSLGKVGFAIVVLSFTLSEDHRKLLAGMITN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L+ I+ + + +DI WS W L+MSKQE+KDE KQS G+P Sbjct: 181 PIAFGLVIRGIAVDILVAIVFVMGLIAAVDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP+++AKGQ+L+A Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPMVLAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNIP+FE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK Sbjct: 301 LKIREIAREHNIPVFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353 >gi|209963536|ref|YP_002296451.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW] gi|209957002|gb|ACI97638.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW] Length = 373 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 109/349 (31%), Positives = 185/349 (53%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE KTE P+ +K+++A +G+ P+SRE S +LA +I + S +T Sbjct: 1 MSERPEDSQKTEEPTQRKLDEARRKGDVPVSREVSSMMLVLAGVILVGGLGSWMGGHLTD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL L+ + L+ + LL L+ +++P + + + + + Q V Sbjct: 61 DLLPLVENPGDFPLQAPADAFRLLAWLAGEIGLVLLPAAAILLAAVLLAAVGQNGIVFTT 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +R+S G++R+ S+ LV F+K K+ VG + + L M + Sbjct: 121 ERLKPKLERISPIAGLRRLVSLRTLVEFLKGLAKVAAVGAALLVVLEPELHRMEALALTD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ + ++L+ L+ + +LD+ W W + +M+ QE+K+E +Q+ G+P Sbjct: 181 VAALPELLTSVLTRLLVATLIASIAIALLDLVWQQFSWRRQQRMTLQELKEEFRQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R R R +M RAT++ITNPTH+A+ALRY +E APV +AKG +L+A Sbjct: 241 HVKARISQLRRERARQRMFSDIPRATVVITNPTHFAVALRYDLSEAPAPVCLAKGMDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +++R+ A H +PI E P LAR+L K V I + P Y AVA++I + Sbjct: 301 RRIREAAMGHKVPIVENPPLARALHKSVEIGEEVQPEHYMAVAEVISYV 349 >gi|187926251|ref|YP_001892596.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J] gi|241665739|ref|YP_002984098.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D] gi|187728005|gb|ACD29169.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J] gi|240867766|gb|ACS65426.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D] Length = 387 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S +++E A EG+ P SRE + F+ L + + +S Sbjct: 1 MSE-ESDLEKTEPASPRRLEQAREEGDVPRSRELASFALTAVSAGGLWVMGDSIVRAASS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++ A + + GL+L ++ S L ++ Sbjct: 60 FLARCLEFHRYNYTSGQDQWNYVTGQFMPLA--MTLGGLMLMLVIAALSPLALTRGAISF 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+ +G+ R++S+ L+ + +K+ L+ + + + +++ + Sbjct: 118 KPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIELPQQD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + + +D+ S Q+ K +M+K+E++ E ++S G+P Sbjct: 178 LGVAMRDTLHVAGVAFLCMAAVMMLVAAVDVPLSLWQYARKHRMTKEEVRKEHRESEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A Sbjct: 238 HVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEKEGGAPRVLAKGADMVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++ EH IPI E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 298 AKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAEVLAYVYQLR 350 >gi|258592485|emb|CBE68794.1| Flagellar biosynthetic protein FlhB [NC10 bacterium 'Dutch sediment'] Length = 359 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 180/350 (51%), Gaps = 2/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D ++TE+ +SK+ ++A G S++ + +L+ ++ + + + Sbjct: 3 SDDAKDRTESATSKRRQEARGRGQVARSQDLNAALLMLSGILTFYVLGGSLVADLVGLMR 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 +L + + + SL + ++ P + ++ S + Q + N + + Sbjct: 63 FYFGQGLGGEL-TVPRVQQTMFSASLRMATMLAPLMGTLVVVAYVSSVAQVGFLTNSSAL 121 Query: 124 KPSFKRVSLREGIKRIYSI-NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++R++ G KR+++ L+ +KS +K LVG ++ +L+ + + + P Sbjct: 122 SLKWERLNPATGFKRLFAPGRTLIETIKSILKFALVGFLVYRTLSGHLSEIPLLMDMTPM 181 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 L ++ + + L TL LD GW Q+ ++M+K+E+K+E+KQ+ G+P + Sbjct: 182 QTLTWLGQICFQLALRVGLAFLTLAALDYGWQRWQFEKSIRMTKEEVKEEMKQTEGDPAV 241 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R K + R H+MM +A ++I NP H+A+A+RY T +AP +VAKG L+A++ Sbjct: 242 KGRIKGLQRQAAMHRMMTDVPKADVVIVNPIHFAVAMRYDSTSMEAPTVVAKGARLVAER 301 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + +A H IPI E+P LAR+L+K V I IP YKAVA+++ +Y Sbjct: 302 IVAMAKAHGIPIVEDPPLARALYKAVSIGRPIPIHLYKAVAEILAYVYQM 351 >gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum ATCC 824] gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824] gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acetobutylicum EA 2018] Length = 610 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 88/347 (25%), Positives = 176/347 (50%), Gaps = 1/347 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE + K+ +A +G S+E L ++++A + + + Sbjct: 260 ADSDKTEEATPKRKSEARKKGQVARSKEVPLAATLVAITFIISLGGQTFFNGLGVMMQTF 319 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S L ++ + ++ + L+A + + + M+ GI + + Q + +KP Sbjct: 320 FQSYIHSNLTEL-DLRRIIIFVILNAGKFIFMFGVPVMVVGIVANIAQTGWITTTEPIKP 378 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 K+++ G KRI+S+ +VN +K V + ++ + L NY + + + I Sbjct: 379 DLKKLNPISGFKRIFSMTTIVNLLKDLVVVAVLSVVGYKFLMSNYGDIANLNNLMVQYIP 438 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 V + ++ L + + D ++ +++ +KM+K E+K+E KQ+ G+P IK + Sbjct: 439 QAYLSYVISIFRIVALIMIVIAGFDFVYNRYKYKKDMKMTKHEVKEEFKQAEGDPEIKGK 498 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ R + M+ AT++ITNPTH ++A++Y + + AP +VAKG + A ++++ Sbjct: 499 RRQRMREIVTRTMLSKVPDATVVITNPTHISVAIKYERGVDKAPTVVAKGADRTALRIKE 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 IA E+N+PI E LAR +FK+V ++ IP Y+ VA+++ +Y Sbjct: 559 IAKENNVPIMENKPLARLIFKKVEVDEQIPAEMYQTVAEILALVYKL 605 >gi|302384124|ref|YP_003819947.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides ATCC 15264] gi|302194752|gb|ADL02324.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides ATCC 15264] Length = 362 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 105/354 (29%), Positives = 190/354 (53%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ P++KTE S +K+E+A +G+ S + + S+L L+ ++ Sbjct: 1 MAEDADPESKTEEASPQKLEEARKKGDVAKSADVAPALSLLCVTGVLIMGGGYFATNMAQ 60 Query: 61 DLHVLLASA-TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 +A+ + V + + + + +L ++ G+G + Q V++ Sbjct: 61 GFLPFIAAPHAMLGGLEAGGGVEIGARVLWVVAPFLGAVMLAAILGGVGGNVAQSGLVIS 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP + +VS G KRI+ + L+ F ++ +K++ VG I + L + + Sbjct: 121 AEKMKPKWSKVSPMAGFKRIFGPDGLMQFAQTLLKLVAVGVICWMVLKPHARQFETMAAM 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P +IL A + ++ L+F+A D W ++ +++MSK+E+K+E KQS G+ Sbjct: 181 SPLTILPLARDLMIALMSSALVFLALTAGGDFVWQKMRFAKRMRMSKEELKEEYKQSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK + K I R R +MM+ +AT+I+TNPTHY++ALRY + APV VAKG + + Sbjct: 241 PHIKAKLKQIRMQRSRQRMMQNVPKATVIVTNPTHYSVALRYEAG-DAAPVCVAKGVDAV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R++A EH++PI E LAR+L+ V I+ IP ++A A++I + K+ Sbjct: 300 AMRIREVAREHDVPIVENVPLARALYAAVDIDETIPREHFEAAARVIGFVMKKR 353 >gi|150020741|ref|YP_001306095.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis BI429] gi|149793262|gb|ABR30710.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis BI429] Length = 377 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 187/348 (53%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE + ++ + A EG PISRE + + LA ++ F I + S + Sbjct: 29 ADPDKTEKATPRRRQKAREEGQVPISRELTSGFTFLAAVLGFAFLGRGIILGLESAV-AF 87 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 A +I+ + + ++ + + M+ GI +Q + +K Sbjct: 88 FAELPSYDTININDLGIYAFNAFKGLIIDLVIFVGIIMVTGIAVGSLQTKFLFTFKSLKL 147 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F +++ G+KR++S+ +L +KS +K+++VG + + + N+ ML I + Sbjct: 148 DFSKINPINGLKRMFSLRSLFELLKSILKLVIVGYVGYLVIKSNWNKMLLAIDKSVKDGS 207 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++LI + + +++ D +S +++ ++M+KQE+K+E K+ GNP IK + Sbjct: 208 LLIWDITFELLIKCGIALFIVSIADYFFSRYEYEKNIRMTKQEVKEEFKEVEGNPEIKRK 267 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ I H+MM+ AT++ITNPTH+A+A++Y E + P++VAKG + +A+K++K Sbjct: 268 QREIMMQYSMHRMMQEVPEATVVITNPTHFAVAIKYEVDEMEVPIVVAKGMDNLAEKIKK 327 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E+N+PI P LAR L+ V + IP FY+AVA+++ +Y K Sbjct: 328 VARENNVPILRNPKLARELYFNVDVGDEIPEKFYRAVAEVLAYVYSLK 375 >gi|260779326|ref|ZP_05888218.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] gi|260605490|gb|EEX31785.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC BAA-450] Length = 375 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE S +KI+ A EG P ++E + + LA +Y P I+ + Sbjct: 1 MSEQ-SSQDKTEKASPQKIKKARQEGQIPRAKEFTTAAIFLAVAVYFYSQL-PVIWESIA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T++ L + +V L H L++P ++ + + S ++ + L Sbjct: 59 GIFRFNMTLTKQDLANPKQMVEQLGHSLGMIITLLLPMFVVIIAVTLASTMVLGGWMFRL 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +V P +++ GIKR++S +LV +KS +K++++ ++ L + +L + Sbjct: 119 ANVFPKLSKLNPLSGIKRMFSTRSLVELLKSTLKVLVIFGVLYAYLDNHLQPLLGMQRLS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L+M+ + V+DI + + +LKM+KQE+K+E K + G P Sbjct: 179 LEQGVVNVMQILFDGLLMMGFALLLFGVIDIPYQRWEHMKELKMTKQELKEEYKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTHYA+A++Y +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVAMKYDPALSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I A+P Y AVA ++ + K Sbjct: 299 MHIQRIARENQVEIINSPPLTRSIYYTTAIEQAVPSQLYIAVAHILTYVMQLK 351 >gi|239834455|ref|ZP_04682783.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG 3301] gi|239822518|gb|EEQ94087.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG 3301] Length = 356 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 120/346 (34%), Positives = 199/346 (57%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL +GN P SRE + + I + LI +F P + Sbjct: 1 MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ + V F+KS K + I+ + D ++++ Sbjct: 121 ERIRPQASRISPLKGWQRIFGRSGQVEFLKSLAKFLAASVIVFVVFFSGNSLFTDAVASD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ + ++L+ +L I + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ AT+I+ NPTH+++ALRY ++ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R+IA +H+IPIFE+ LAR+L+KQV ++ I P FYKAVA+LI Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELI 346 >gi|57237386|ref|YP_178399.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni RM1221] gi|86149065|ref|ZP_01067297.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597389|ref|ZP_01100624.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 84-25] gi|205356015|ref|ZP_03222783.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561994|ref|YP_002343773.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57166190|gb|AAW34969.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni RM1221] gi|85840423|gb|EAQ57680.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190450|gb|EAQ94424.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 84-25] gi|112359700|emb|CAL34486.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205346139|gb|EDZ32774.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315928679|gb|EFV07962.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 305] Length = 362 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY + AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTGKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|71906378|ref|YP_283965.1| flagellar biosynthesis protein FlhB [Dechloromonas aromatica RCB] gi|71845999|gb|AAZ45495.1| Flagellar biosynthetic protein FlhB [Dechloromonas aromatica RCB] Length = 379 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 180/352 (51%), Gaps = 3/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ ++IE A +G P SRE + F + S + Sbjct: 3 MAE-DSDLEKTEEPTGRRIEQAREQGQVPHSRELATFLVLAVAGATFWMMGSWFMQRSLV 61 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + D ++ L +S A + P L L ++ I V + Sbjct: 62 IMQKGFFVESRY-MRDPDLMLPRLAEISGDALFVFSPLLGLLLLAAILPPFFLNAWVFSP 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G R++S N+L+ K+ +K +LVG + + + + + + Sbjct: 121 KALVPDLNRLNPLSGFGRMFSWNSLMELAKAVLKAVLVGGVAAMLIWKERDEIFGLLGEP 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L HA V ++++ + + V D+ + Q++ KLKMSK+E+K E+K+ G+P Sbjct: 181 LEVGLAHAGHLVSFSFLILVATLVLVVVADVPFQLWQYFDKLKMSKEEVKQEMKEMMGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+ R +MM A +A +++TNPTHYA+AL Y QT AP +VAKG +A Sbjct: 241 HVKGRIRSLQMQAARKRMMSAVPKANVVVTNPTHYAVALAY-QTGMGAPKVVAKGVGAVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+++IA EH +PI E P LAR+L+K +++ IP Y AVA+++ IY Sbjct: 300 LKIKEIANEHAVPIMEAPPLARALYKHSELDTEIPSALYNAVAEVLAYIYQL 351 >gi|157373227|ref|YP_001471827.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3] gi|157315601|gb|ABV34699.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3] Length = 376 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 181/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +KTE + +K++ A ++G P S++ + + I+ C + L + + + Sbjct: 1 MS-KDTGQSKTEKATPQKLKKAQDQGQVPRSKDLAATALIIGCSLMLTA-SADWFATRVA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T+ +L++ ++ L + ++ P ++L + + + + PV N Sbjct: 59 RVAQYNMSLTKAELDEPGMMMSHLGTSLVEILNILGPIIVLIAVLAMVAGSMPGGPVFNF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ GI R++S+ +LV +KS +KI+L+ I+ L N ++L + Sbjct: 119 KNAAFKYSRIDPIAGIGRMFSMKSLVELVKSILKIVLLIGIMFTFLEHNLQSLLGYSQLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++ + + + +T +D+ + Y +++LKMS+Q++KDE KQ G P Sbjct: 179 IDEAVRKGIDILSLGMLYLGIGMLVITFIDVPYQYWHHHNELKMSRQDVKDEHKQQEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + + R + A +A +++ NP HYA+AL+Y + DAP ++ KG + +A Sbjct: 239 EIKAKIRQLQQRIGRSRADVAIPQADVLLVNPNHYAVALKYDVEKADAPYVLTKGTDELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR+IA H++ + E P LAR+++ + IP + A+A ++ + K Sbjct: 299 LYMRQIAKHHDVEVIELPPLARAIYYSTQVEQQIPAALFIAIAHVLSYVLQIK 351 >gi|296135634|ref|YP_003642876.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12] gi|295795756|gb|ADG30546.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12] Length = 373 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K S K+ + A +G SR+ + S +L + +++ Y + Sbjct: 1 MAE-DSAQEKELPASQKRKQQAREKGQVARSRDLTS-SLLLLGMAAVVYTAGGWFYDMGR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + +D + ++ + + ++ P L L + + V + Sbjct: 59 ELLQTGLTVSASASQDPAAMLQAAGRVLVLGLIVLAPVLALTFLASAAGGVAMGGWVFST 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R+ +GI R++SI L K+ +K I++ I I + +L + Sbjct: 119 EALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVIWNERGALLGLLQVE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + + + +D+ W Q KLKMS+Q+++DE+++S GNP Sbjct: 179 PQLAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKLKMSRQDLQDEMRESEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R R R +MM A +A +++TNPTHYA+AL Y + +N APV++A G + +A Sbjct: 239 QIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYKEGKNRAPVVLALGADRVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A EHN+P+ E P LAR+LF + IP Y AVA L+ ++ + Sbjct: 299 ARIREVAAEHNVPVIEAPPLARALFHHAELEQEIPVALYNAVALLLAYVFQLR 351 >gi|153952141|ref|YP_001398614.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. doylei 269.97] gi|152939587|gb|ABS44328.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. doylei 269.97] Length = 362 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIIIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVAQLAWLRDRSIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVADADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|302037621|ref|YP_003797943.1| flagellar biosynthetic protein FlhB [Candidatus Nitrospira defluvii] gi|300605685|emb|CBK42018.1| Flagellar biosynthetic protein FlhB, export component [Candidatus Nitrospira defluvii] Length = 360 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 185/356 (51%), Gaps = 5/356 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ N+TE + K+ DA +G +SR+A++ +L L L + + + Sbjct: 1 MA--DSGQNRTEQATPKRKADARAKGQVALSRDAAMAVGLLGSLGALYWMTPGILNGLRE 58 Query: 61 DLHVLLASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L + L+ + + + + H+ +L + + ++ P + + G+G+ LIQ + Sbjct: 59 SLQLWLSKSMEESTQRTLSLDHLHLILRQVGVDVFVMLGPVIAGIAVVGVGANLIQTGFL 118 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + ++ F R+S G R++S+ + +KS++KI +G + +++ ++ Sbjct: 119 WKRDALQLEFSRISPMAGFSRLFSVRSFSELVKSWLKIFAIGGVGYLTIKQDMVLFSPLT 178 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 ++L + K +M+ + LD G+ +W L+MS+ EIK+E + + Sbjct: 179 QFGMETLLPTVGWATFKAALMMGGAALVIGGLDYGFQRFEWERDLRMSRDEIKEESRAAE 238 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K + +S R R +MM A +A +IITNPTH A+AL+Y AP++VAKG Sbjct: 239 GDPGLKAKIRSTQREMSRKRMMAAVPKADVIITNPTHLAVALKYDSKAMGAPIVVAKGAG 298 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+R+I +H + I E +AR+LFK V + +P Y+AVA+++ +Y + Sbjct: 299 YVAEKIREIGRQHGVMIVENKLVARTLFKLVEVGREVPEDLYRAVAEILAFVYRVR 354 >gi|56964016|ref|YP_175747.1| flagellar biosynthesis protein FlhB [Bacillus clausii KSM-K16] gi|56910259|dbj|BAD64786.1| flagellar biosynthetic protein FlhB [Bacillus clausii KSM-K16] Length = 362 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 173/346 (50%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + KK +D +G P S++ + + A + L F P +++ ++ + Sbjct: 13 EEKTEKATPKKRQDTRKKGQVPKSQDVNTAFMLFAAFLLLSLFAGPRLFAALKEMMADVF 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +I L L++ +P + L ++ G + +Q + +K Sbjct: 73 QRFLSLPLTAENIAALFNELTIEMGMAALPIMALTVLAGAFASFVQVGSLFTPEPMKLKL 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G KRI+S LV KS +KI+ +G + + N +L + Sbjct: 133 EKLDPIKGAKRIFSTRALVELGKSMLKIVFIGAAVAFVIYANIGDVLLLSQKSVEVGAAS 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + + L + D + + +++MSK++I+DE K G+P I+ R+K Sbjct: 193 IGHLTVTMGLFAAVLLMVLAIPDYLYQRYDHEKQIRMSKKDIRDEHKTMEGDPKIRARRK 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 +++M+ +A ++ITNPTHYA+ALRY Q + DAP++VAKG + +A++++ +A Sbjct: 253 QRQLEMSMNRIMQEVPKADVVITNPTHYAVALRYDQEQADAPIVVAKGVDYMAERIKTVA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H+IP+ E +LAR+++ V + I ++AVA+++ +Y K Sbjct: 313 KKHDIPLVENVALARAMYASVELMQPIHEDMFQAVAEVLAYVYRLK 358 >gi|269963167|ref|ZP_06177502.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832131|gb|EEZ86255.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 350 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + ILA LI +LF F+ S S L +L Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEIVSSALILA-LITVLFAFADYYMSHISALLLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D ++ + ++ L+ P +L+ + I + + Q + + VKP Sbjct: 61 SELAYQGFQD--ALLDVAIAIAKEMVYLLAPIILVAALIAIMANMGQFGFLFSGESVKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + + Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLKGNLNTLLQIPTCGLECVPT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +++++I+ + + D + +LKM+K E+K E K+ G+P IK+++ Sbjct: 179 ITGVLIKQLMIISAVGFIVIAAADFAYQKFHHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M I Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E IP+ ++ LAR+L+ +N IP +A A+++ + Sbjct: 299 AKEEGIPVMQKVPLARALYSDGQLNQYIPGDLIEATAEILRWV 341 >gi|148926430|ref|ZP_01810113.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844593|gb|EDK21699.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 362 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIIPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVTQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|309778952|ref|ZP_07673722.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA] gi|308922299|gb|EFP67926.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA] Length = 387 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 173/353 (49%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S +++E A EG+ P SRE + F+ L + + ++ Sbjct: 1 MSE-ESDLEKTEPASPRRLEQAREEGDVPRSRELASFALTAVSAGGLWVMGDSIVRAASA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++ A + + GL+L ++ S L ++ Sbjct: 60 FLARCLEFHRYNYTSGQDQWNYVTGQFMPLA--MALGGLMLMLVIAALSPLALTRGAISF 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+ +G+ R++S+ L+ + +K+ L+ + + + +++ + Sbjct: 118 KPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIELPQQD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + + +D+ S Q+ K +M+K+E++ E ++S G+P Sbjct: 178 LGVAMRDTLHVAGVAFLCMAAVMMLVAAVDVPLSLWQYARKHRMTKEEVRKEHRESEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +++A Sbjct: 238 HVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEKEGGAPRVLAKGADMVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++ EH IPI E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 298 AKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAEVLAYVYQLR 350 >gi|149191144|ref|ZP_01869402.1| flagellar biosynthetic protein [Vibrio shilonii AK1] gi|148834982|gb|EDL51961.1| flagellar biosynthetic protein [Vibrio shilonii AK1] Length = 382 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 180/356 (50%), Gaps = 7/356 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ +K+E PS K+ A EG P ++E ++++ + Y + I + Sbjct: 1 MSEHQDSGDKSEQPSQHKLSKARREGQVPRAKEFVSSVTLISVVAYYVL----NIDMIKQ 56 Query: 61 DLHVLLASATQRKLEDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L + Q + ISH + LL S L P L+ ++ I + + Sbjct: 57 TFIELFLVSFQFDTQTISHWMTSVELLGTALFSMVMLFFPLLIYQIIAAIFGSTLLGGWI 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L+ + + P +++S +GIKRI+S ++V K+ K+ L +++ ++ + + + Sbjct: 117 LSPSLLTPKLEKISPIKGIKRIFSTQSVVELFKNVFKVTLFFSLLYWVISSYISVITNLV 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 SA+ ++++ + L +LL + + D + H++ ++KM+KQE+KDE K+ Sbjct: 177 SAHFDTVVFTVATITIEYLGYLLLIVLIFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQE 236 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P +K R + I + E +A +++TNPT YA+AL Y T+ +AP +VAKG++ Sbjct: 237 GRPEVKARIRQIQTQNAKRGANERVPKANVVLTNPTQYAVALIYDLTQAEAPFVVAKGKD 296 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +R++A +H++ + E L R+++ ++ +P + A+A ++ + K Sbjct: 297 EVAVYIRELAAKHSVEVVESAELTRAIYNTTQVDQMVPNQLFVAIAHILTYVNQLK 352 >gi|328468938|gb|EGF39898.1| translocation protein in type III secretion [Vibrio parahaemolyticus 10329] Length = 351 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KK+ DA +G S+E + ILA LI +LF F+ S S L +L Sbjct: 2 SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP Sbjct: 61 SELAYQGFQD--ALIDVAIAIAKEMAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + + Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +++++I+ + + D + KLKMSK E+K E K+ G+P IK+++ Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E +P+ ++ LAR+L+ ++ IP +A A+++ + Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWL 341 >gi|89895721|ref|YP_519208.1| hypothetical protein DSY2975 [Desulfitobacterium hafniense Y51] gi|89335169|dbj|BAE84764.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 354 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 171/353 (48%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ N + KT + ++ ++A +G S E +++ + L F+ + V+ Sbjct: 1 MAGNMS--EKTFQATPRRRQEARKKGQVFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + L+ L ++V P ++ + G+ +Q + L Sbjct: 59 IFPYVYGLSAEW---TARSVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTL 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP R+S+ G KR++ + V +KS +K+ +G + ++ +N+ Sbjct: 116 EPLKPQLSRISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLT 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ I L + +D + + + LKMS +E+K E KQ+ GNP Sbjct: 176 VGQGAMFIGGLIVELGWKIALSFFVIAAIDFLYQWWDYEKNLKMSHEELKQEYKQTEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K K R+ +MM+ A +++TNPTHYA+ALRY EN APV+VAKG + IA Sbjct: 236 QLKGEIKRKQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++++A ++ I E LAR+LF Q I A+P YKAVA+++ +Y K Sbjct: 296 QRIKQLAKDYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 348 >gi|284925607|gb|ADC27959.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni IA3902] Length = 362 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMLSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|325109030|ref|YP_004270098.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM 5305] gi|324969298|gb|ADY60076.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM 5305] Length = 357 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 173/352 (49%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D K+E P+ ++ +A N+GN S + + + +LA L+F Sbjct: 1 MADDD-QGEKSEDPTDQRRREARNQGNVAKSVDVNAAAIMLAATGGLMFLGPDIAKGFAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L +L D ++ ++ + + +P +LL ++ + + L Q + Sbjct: 60 LLRRYLEGPPVLEL-DRFMVMREFWNIFQAVAGFALPFMLLMLLTAVVANLAQIGVLFTT 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++R++ G +RI+S+ F S KI+ + + L + + Sbjct: 119 EPLGFKWQRINPVSGFQRIFSVAAFAKFGTSVGKIVAMAGVACWFLYLKLPALQGMGQSE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P IL + ++ + L + + +LD + + LKMSKQEI+DE+K G+P Sbjct: 179 PSVILGTIGSVILELAFQLALAMLIIALLDYSFQKWKHEQDLKMSKQEIRDEMKNMDGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ R+K R K + A A +++TNPTH ++AL+Y T++ APV+VAKG IA Sbjct: 239 HIRQRRKEAHRKLAEAKELNAVRDADVVLTNPTHLSVALKYDSTKHPAPVVVAKGAGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++R+IA E+N+PI E LAR+L++ V + IP Y+ +++ +Y Sbjct: 299 MRIREIARENNVPIIERKPLARALYRDVKVGHPIPAEMYEVFVEIMAYVYRL 350 >gi|291558215|emb|CBL35332.1| flagellar biosynthetic protein FlhB [Eubacterium siraeum V10Sc8a] Length = 353 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 179/346 (51%), Gaps = 2/346 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + KK +D +G S+E ++ ++ +L F + + + + Sbjct: 2 AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIFGNYMFQMLLNFMEQS 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 ++S + + + + +++ V P L + ++ + ++Q + ++ +KP Sbjct: 62 MSSIDKTG-NTVEFAMSVFWKVAIICVCTVGPILAVGVVLSVLPVIVQTKGLFSMEAMKP 120 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F R++ GIKR++S+ LV +K ++II+V I+ + + I + I+ Sbjct: 121 KFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIKIV 180 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + T +++ I + + + D + + + KLKMSKQE+KDE KQ G+P IK + Sbjct: 181 AYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIKGK 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMR 304 K + + +MM+ A +++ NPTHYA+AL+Y + APV+VAKG + +A ++ Sbjct: 241 IKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALRIV 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A EHN+ I E LAR L++ V I IP FY AVA+++ +Y Sbjct: 301 AVAEEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVY 346 >gi|300694355|ref|YP_003750328.1| flagellar export pore protein [Ralstonia solanacearum PSI07] gi|299076392|emb|CBJ35708.1| flagellar export pore protein [Ralstonia solanacearum PSI07] Length = 389 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 173/355 (48%), Gaps = 7/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE+ S +++E A EG+ P SRE F + L S+ Sbjct: 1 MSE-DSDLEKTESASPRRLEQAREEGDVPQSRELVSFVLLAVAAGGLWVMG----ESIVR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118 LA + D + ++ L V+ GL+L ++ S L + Sbjct: 56 TASSFLARCLEFHRYDYTRAQAQWQYVGAQFGPLAMVLAGLMLMLVLASLSPLALTRGAI 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P R+ G+KR++S+ L+ + K+ LVG + + ++ Sbjct: 116 SFKPLTPDISRLIGLHGLKRMFSVQGLLELPRLLAKLALVGGVGWWLILHYRDAFVELPR 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + + + + + +D+ + Q+ K +M+K+E++ E ++S G Sbjct: 176 GDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG +L Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADL 295 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 296 VAAKIRELGAEHRIPVLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350 >gi|86153620|ref|ZP_01071823.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni HB93-13] gi|157414632|ref|YP_001481888.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni 81116] gi|4105266|gb|AAD02331.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni] gi|85842581|gb|EAQ59793.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni HB93-13] gi|157385596|gb|ABV51911.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747272|gb|ADN90542.1| Flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni M1] gi|315931587|gb|EFV10553.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 327] Length = 362 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|163802012|ref|ZP_02195908.1| translocation protein in type III secretion [Vibrio sp. AND4] gi|159174153|gb|EDP58961.1| translocation protein in type III secretion [Vibrio sp. AND4] Length = 350 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + ILA LI +LF F+ S S L +L Sbjct: 2 SGEKTELPTPKKLRDARKKGQVAKSQEVVSSALILA-LIAVLFAFADYYMSHISALLLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + D ++ + ++ L+ P L++ + I S + Q + + VKP Sbjct: 61 SKLAYQGFHD--ALIDVAIAIAEEIIYLLAPILIVAALVAIMSNMAQFGLLFSGESVKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+V+ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + + Sbjct: 119 IKKVNPAEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPA 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V++++I+ + + +D + +LKMSK E+K E K+ G+P IK+++ Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAVDYAYQKFNHTKQLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + + R+ +++TNPTH A+ L Y + E P++ K + +AK+M I Sbjct: 239 RQLHQEMQSSNQRDNVKRSNVLVTNPTHIAIGLYYKKDETPLPIITLKETDAMAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E IP+ ++ LAR+L+ ++ IP ++ A+++ + Sbjct: 299 AREEGIPVMQKVPLARALYADGQLDQYIPGELIESTAEILRWV 341 >gi|28898449|ref|NP_798054.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|260365107|ref|ZP_05777678.1| translocation protein in type III secretion [Vibrio parahaemolyticus K5030] gi|260876610|ref|ZP_05888965.1| translocation protein in type III secretion [Vibrio parahaemolyticus AN-5034] gi|260895029|ref|ZP_05903525.1| translocation protein in type III secretion [Vibrio parahaemolyticus Peru-466] gi|260900960|ref|ZP_05909355.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ4037] gi|28806666|dbj|BAC59938.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|308085922|gb|EFO35617.1| translocation protein in type III secretion [Vibrio parahaemolyticus Peru-466] gi|308093607|gb|EFO43302.1| translocation protein in type III secretion [Vibrio parahaemolyticus AN-5034] gi|308110774|gb|EFO48314.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ4037] gi|308111655|gb|EFO49195.1| translocation protein in type III secretion [Vibrio parahaemolyticus K5030] Length = 351 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KK+ DA +G S+E + ILA LI +LF F+ S S L +L Sbjct: 2 SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP Sbjct: 61 SELAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + + Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +++++I+ + + D + KLKMSK E+K E K+ G+P IK+++ Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E +P+ ++ LAR+L+ ++ IP +A A+++ + Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWL 341 >gi|118475475|ref|YP_891544.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp. fetus 82-40] gi|118414701|gb|ABK83121.1| flagellar biosynthetic protein FlhB [Campylobacter fetus subsp. fetus 82-40] Length = 357 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 180/350 (51%), Gaps = 5/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ K E P+ KK+EDA N+GN S++ S F ++L L+ + + Sbjct: 1 MADD---QEKIEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVN 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + H L +++P + M+ GI S ++Q + + Sbjct: 58 LYLYYQGLIGVEITREL--FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTV 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F ++ +GI ++S+ L++ +K +K+ V + + + I + Sbjct: 116 EPIMPNFSKIDPIKGIANLFSLKKLIDAVKIILKVSAVFGVAFYFFLQFVKELPHTIFFS 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + + ++LL + + D+ +Q++ L+MSKQE+KDE KQ G+P Sbjct: 176 MFNQLLWLKEKMLILAGVMLLLFLIIAIADVFIVRYQYFKGLRMSKQEVKDEFKQMEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +MM+ A ++ITNPTHYA+ALRY + + APV++AKG + +A Sbjct: 236 KVKGRIRQLQMQAARKRMMQNIPTADVVITNPTHYAVALRYDKEKEKAPVVLAKGVDHLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++RKIA E+ I I E P LAR L+K I+ IP ++AVA+++ +Y Sbjct: 296 LRIRKIATENGIQIVENPPLARELYKLCDIDDQIPGNLFQAVAEVLSFVY 345 >gi|90422606|ref|YP_530976.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB18] gi|90104620|gb|ABD86657.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisB18] Length = 358 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 123/353 (34%), Positives = 215/353 (60%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++KTE P+ KKI D++ +G P+SREAS+FSS++A L+ L F + ++T+ Sbjct: 1 MSEGPDKESKTEEPTEKKIRDSVEKGKIPVSREASIFSSMIALLLILSFLAVDNVRNLTA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++ + ++ + L + SA+ LV+P +++ + G+ + ++Q +P++ Sbjct: 61 TLARMIDDPSGIRIRTAADATEFLVAVGASAAGLVLPIVIVLAVAGVLASVLQNVPLIVF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+S+ +G RI+ V F KS K I + ++TI L T ++ + ++ Sbjct: 121 ERIAPDASRISIAKGWGRIFGGQGRVEFAKSVFKFIAISLVVTIVLRAEEATAVNALFSD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ +++ I + L LD+ W+ W L+M+KQE+KDE +Q+ G+P Sbjct: 181 PTAVPELILAAAMRLVSAISIATIVLVALDLLWARFHWRRDLRMTKQELKDEFRQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +SIAR R R +M+ A RAT++I NPTHYA+AL+Y E+ AP ++AKGQ+LIA Sbjct: 241 IVKSRLRSIARDRARKRMLAAVPRATLVIANPTHYAIALKYQHGEDAAPTVLAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA +N+P+ E+ LARS++ I+ IP F++ VA++IY ++ ++ Sbjct: 301 LKIREIAERNNVPVVEDRMLARSMYDAAEIDRVIPAEFFRPVAEIIYFLHSRR 353 >gi|188574349|ref|YP_001911278.1| type III secretion system protein HrcU [Xanthomonas oryzae pv. oryzae PXO99A] gi|50428352|dbj|BAD29989.1| HrcU [Xanthomonas oryzae pv. oryzae] gi|188518801|gb|ACD56746.1| HrcU [Xanthomonas oryzae pv. oryzae PXO99A] Length = 359 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 62 D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDISQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++ Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + AIP ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341 >gi|153836170|ref|ZP_01988837.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ3810] gi|149750445|gb|EDM61190.1| translocation protein in type III secretion [Vibrio parahaemolyticus AQ3810] Length = 351 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 178/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KK+ DA +G S+E + ILA LI +LF F+ S S L +L Sbjct: 2 SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D ++ + ++ + L+ P +L+ + I S + Q + + +KP Sbjct: 61 SELAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T++ + + Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +++++I+ + + D + KLKMSK E+K E K+ G+P IK+++ Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + E R+ +++TNPTH A+ L Y + E P++ + +AK+M I Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPIITLMETDAMAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E +P+ ++ LAR+L+ ++ IP +A A+++ + Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWL 341 >gi|269792925|ref|YP_003317829.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100560|gb|ACZ19547.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio acidaminovorans DSM 6589] Length = 366 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 175/346 (50%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + +K A EG S++ + I + L+ +L F + ++ Sbjct: 15 EEKTEPATPRKRRKAREEGQVTKSQDLTAAVVIASGLLGVLVFGGFFFRRLQLLFAQVMG 74 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + ++ + S + P L + +G Q ++ + P+ Sbjct: 75 YLKDPSMGGEEWLLLPFSRALGSYLLIWFPLGLACALAALGLMAYQVGLMITPKPLVPNL 134 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ G+K+++S + V +K +K +++ ++ +L ++ T+L I L Sbjct: 135 NRMNPVSGMKKMFSGRSFVEMLKGVLKALILLLMLYGALRKDLLTLLGAIGQPFGEGLGL 194 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + V + + + L + L + D + ++ ++MSKQEIK+E KQ G+P++K R + Sbjct: 195 VMWRVWVLCMKMTLMLMVLGLFDYAYQRWEFERSIRMSKQEIKEEYKQMEGDPLVKRRIR 254 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R R +MM +A ++ITNPTH A+AL Y + +APV++AKG+ LIA+++R+IA Sbjct: 255 QRQRELARRRMMSDVPKADVVITNPTHVAVALSYDRKVAEAPVVLAKGKGLIAQRIREIA 314 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E+ +P+ + P LAR+++ QV + IP YKAVA+++ +Y + Sbjct: 315 RENRVPVVQNPPLARAIYAQVEVGEEIPESLYKAVAEVLAFVYRLR 360 >gi|153832518|ref|ZP_01985185.1| VscU [Vibrio harveyi HY01] gi|156974012|ref|YP_001444919.1| Type III secretory pathway, component EscU [Vibrio harveyi ATCC BAA-1116] gi|41834187|gb|AAS13325.1| VscU [Vibrio harveyi] gi|148871313|gb|EDL70185.1| VscU [Vibrio harveyi HY01] gi|156525606|gb|ABU70692.1| hypothetical protein VIBHAR_01723 [Vibrio harveyi ATCC BAA-1116] Length = 349 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + ILA LI +LF F+ S S L +L Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILA-LIAVLFAFADYYMSHISALLLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D ++ + ++ L+ P L++ + I S + Q + + VKP Sbjct: 61 SELAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N T+L + + Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V++++I+ + + D + +LKM+K E+K E K+ G+P IK+++ Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M I Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+E IP+ ++ LAR+L+ +N IP +A A+++ + Sbjct: 299 AHEEGIPVMQKVPLARALYADGQLNQYIPGDLIEATAEILRWV 341 >gi|219670145|ref|YP_002460580.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense DCB-2] gi|219540405|gb|ACL22144.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense DCB-2] Length = 350 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KT + ++ ++A +G S E +++ + L F+ + V+ + Sbjct: 3 EKTFQATPRRRQEARKKGQVFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQIFPYVYGL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + L+ L ++V P ++ + G+ +Q + L +KP Sbjct: 63 SAEW---TARSVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTLEPLKPQLS 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R+S+ G KR++ + V +KS +K+ +G + ++ +N+ Sbjct: 120 RISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLTVGQGAMFI 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ I L + +D + + + LKMS +E+K E KQ+ GNP +K K Sbjct: 180 GGLIVELGWKIALSFFVIAAIDFLYQWWDYEKNLKMSHEELKQEYKQTEGNPQLKGEIKR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R+ +MM+ A +++TNPTHYA+ALRY EN APV+VAKG + IA++++++A Sbjct: 240 KQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIAQRIKQLAK 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ I E LAR+LF Q I A+P YKAVA+++ +Y K Sbjct: 300 DYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 344 >gi|312883875|ref|ZP_07743592.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus ATCC BAA-2122] gi|309368333|gb|EFP95868.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus ATCC BAA-2122] Length = 350 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 182/343 (53%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E S+++ L+ +LF FS S S L +L Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEVVS-STLILALVAVLFAFSDYYMSHISALMLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D +V + ++ L+ P LL+ ++ I S + Q + + + VKP Sbjct: 61 SKLAYQGFQD--ALVDVAIAMAEEIIYLLAPILLVTVLVTIVSNMGQFGLLFSAHSVKPE 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +LV+F+KS +K+ L+ II I+L N T+L+ + + + Sbjct: 119 IKKINPAEGAKRIFSMKSLVDFIKSILKVSLLSCIIWITLKGNLNTLLNIPNCGLNCVPI 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V++++ + + + +D + ++ +LKMSK E+K E K+ G+P IK+ + Sbjct: 179 ITGVLVQQLMFISAIGFIIIAAVDYAYQKYEHTKQLKMSKDEVKREYKEMEGSPEIKSAR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M + Sbjct: 239 RQFHQELQSSTQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAL 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E IP+ ++ LAR+L+ ++ IP +A A+++ + Sbjct: 299 AREEGIPVMQKVPLARALYADGQLDQYIPGELIEATAEILRWV 341 >gi|153011537|ref|YP_001372751.1| flagellar biosynthesis protein FlhB [Ochrobactrum anthropi ATCC 49188] gi|151563425|gb|ABS16922.1| flagellar biosynthetic protein FlhB [Ochrobactrum anthropi ATCC 49188] Length = 356 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 119/346 (34%), Positives = 198/346 (57%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL +GN P SRE + + I + LI +F P + Sbjct: 1 MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K + I+ + D ++++ Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKFLAASVIVFVVFFNGNSLFTDAVASD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ + ++L+ +L I + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAAFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ AT+I+ NPTH+++ALRY ++ AP++VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPIVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 K+R+IA +H+IPIFE+ LAR+L+KQV ++ I P FYKAVA+LI Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELI 346 >gi|283955188|ref|ZP_06372690.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 414] gi|283793401|gb|EFC32168.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 414] Length = 362 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 184/351 (52%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ ++ + L + + Sbjct: 1 MASED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTVTLLMMGFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMVAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ LV +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKLVESVKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVAQLTWLRDRAIVLAAIVMVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|84621748|ref|YP_449120.1| type III secretion system protein HrcU [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|9711589|dbj|BAB07858.1| HrcU [Xanthomonas oryzae pv. oryzae] gi|84365688|dbj|BAE66846.1| HrcU protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 359 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 62 D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVMWVGIRTLMPMIIGLAYETPLDISQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++ Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + + ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + AIP ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341 >gi|91795014|ref|YP_564665.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans OS217] gi|91717016|gb|ABE56942.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans OS217] Length = 376 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 167/353 (47%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE +KTE + ++I A +G P S++ + + IL C + L + + S Sbjct: 1 MSE-TPKHDKTEDATPQRIRKAREQGQVPRSKDLASAALILGCSLMLTS-SADWFATKIS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + L ++ L + L+ P L+ + + + P+ + Sbjct: 59 QLTRYNMLVSHEDLLQDDVMLMHLGTSLIKMLELLGPLFLIVALLAAIAGALPGGPIFSF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ GI RI+S +L+ +KS +KI L+ I+ L + L + Sbjct: 119 ENANFKYSRIDPIAGIGRIFSSRSLIELLKSVLKITLLIGIMLSFLDTHLIDFLSYSQLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++ + L + + +D+ + Y +LKMS+QEIKDE KQ G P Sbjct: 179 VDEAVTRGIDMLSAGMLYLGLGLIVIAFIDVPYQYWHHLQELKMSRQEIKDEHKQQEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R + + +A +++ NPTHYA+AL+Y DAP ++ KG+ +A Sbjct: 239 EVKAKIRQLQHRMGRSRADTSIPKADVLLVNPTHYAIALKYDPELADAPYVLTKGKEELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MRK+A +H++ I E P+LAR+++ ++ IP + A+A ++ + K Sbjct: 299 LYMRKLAKQHDVEIIEIPALARAIYYSTQVDQQIPGALFMAIAHVLSYVMQIK 351 >gi|255321961|ref|ZP_05363111.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277] gi|255301065|gb|EET80332.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277] Length = 358 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 193/353 (54%), Gaps = 10/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYS 57 M+ D KTE P+SKKIEDA +GN P S++ + F ++ + + LL F ++ Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKDGNVPKSQDLAGFVTLAVAIFVVVALLGFIGDQFFT 58 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + + L+ RKL I + L +++P + + G+ + L+Q + Sbjct: 59 LYNYYQSLIGQEFTRKLLFSVAITTIFRTLL-----IILPIAVCIAIAGVVANLMQFGFI 113 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++P+ +++ +G+K ++S+ L++ +K +K+ V T+ + + + Sbjct: 114 FTTKPLEPNLNKINPIKGLKNLFSLKKLIDGIKMVLKVTAVFTVGFLMFLSFIKELPHTL 173 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L + + ++L+ + + +LD+ Q++ L+MSKQEIKDE KQ Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRFQYFRDLRMSKQEIKDEYKQME 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + R++MM+ +A +IITNPTHYA+ALRY +T+ APV++AKG + Sbjct: 234 GDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAKGVD 293 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A ++++I ++N+ I E P LAR L+K +N IP ++AVA+++ +Y Sbjct: 294 FLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346 >gi|167750709|ref|ZP_02422836.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702] gi|167656388|gb|EDS00518.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702] Length = 353 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 179/346 (51%), Gaps = 2/346 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KTE + KK +D +G S+E ++ ++ +L F + + + + Sbjct: 2 AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIFGNYMFQMLLNFMEQS 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 ++S + + + + +++ V P L + ++ + ++Q + ++ +KP Sbjct: 62 MSSIDKTG-NTVEFAMSVFWKVAIICICTVGPILAVGVVLSVLPVIVQTKGLFSMEAMKP 120 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F R++ GIKR++S+ LV +K ++II+V I+ + + I + I+ Sbjct: 121 KFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIKIV 180 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + T +++ I + + + D + + + KLKMSKQE+KDE KQ G+P IK + Sbjct: 181 AYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIKGK 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMR 304 K + + +MM+ A +++ NPTHYA+AL+Y + APV+VAKG + +A ++ Sbjct: 241 IKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALRIV 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A EHN+ I E LAR L++ V I IP FY AVA+++ +Y Sbjct: 301 AVAQEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVY 346 >gi|197120182|ref|YP_002140609.1| flagellar biosynthesis protein FlhB [Geobacter bemidjiensis Bem] gi|197089542|gb|ACH40813.1| flagellar biogenesis protein FlhB [Geobacter bemidjiensis Bem] Length = 353 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 184/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +KTE P+SKKIE+A N+ P SRE + S++ ++ L + ++ + Sbjct: 1 MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTLYASSGLFLRTMKT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + +L + ++ A ++ P +L+ ++ GI + Q ++ Sbjct: 60 SMQEIFGGLARPELTYAAVHTLMIKEFGYLAI-MLAPFILVGIVVGIAVEVTQGGVTVSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K R++ +G+ R+++ +++ KSF+K+ +VG + LTE ++ + + Sbjct: 119 EKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIVYLVDQD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I+ K+++ + L VLD+ + ++ LKM+KQE+KDE K G+P Sbjct: 179 LMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFMDNLKMTKQEVKDEHKNMEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + K R +M + A +++TNPTHYA+AL+Y + + APV++ KG + +A Sbjct: 239 AIKGKMKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ A E+N+ + E LAR L+ QV IP + AVA+++ +Y K Sbjct: 299 LQIKITARENNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351 >gi|168704083|ref|ZP_02736360.1| flagellar biosynthesis protein FlhB [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ ++KTE P+ ++ E+A +G P S E ++A ++ L + ++ + Sbjct: 1 MAEDVDQESKTEDPTPRRREEARRQGQVPFSAELVGSLVLVAGVLGLRYLGPDLWATMIT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + + LL +L ++P L + G+G+ + Q LN Sbjct: 61 VFRADLPRVGREEF-GTAEAAELLGRTALRMIGAMLPFFGLLLAVGVGASVAQVGFQLNT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P+ +++ G+ R++S+ ++V + + K++ + + L + Sbjct: 120 EKLEPNLDKLNPVGGLGRLFSLGSVVRGLLTVAKVLALAGVAYYVLNGRGGLIASIGMGR 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 A+ V ++ + + +A + V D + +++ L M+K+E+K E+KQ G+P Sbjct: 180 IGEAAPVAWALVMRLALYLAGAVALVAVFDYAYQRYKFEQSLMMTKEELKQELKQEEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + IAR R + KM+ +AT+++TNPTHYA+ALRY + APV+VAKG+ A Sbjct: 240 HVKARVRQIARERTKRKMLSEVPKATVVVTNPTHYAVALRYDSNRDSAPVVVAKGKGAFA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ K A E +P+ E P LAR+L V IP ++AVA+++ + + Sbjct: 300 LRIAKRARESGVPVLERPPLARALH-SVREGQQIPSALFRAVAEVLAFVMKMR 351 >gi|121613536|ref|YP_001000045.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp. jejuni 81-176] gi|87250257|gb|EAQ73215.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 81-176] Length = 368 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LF S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVTQLAWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|268678882|ref|YP_003303313.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum DSM 6946] gi|268616913|gb|ACZ11278.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 106/351 (30%), Positives = 184/351 (52%), Gaps = 5/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE +SKKIEDA EGN P S++ S F +++ L L + S + Sbjct: 1 MADD---QEKTEEATSKKIEDARKEGNVPKSQDMSAFVTLVVALGAFLAWLSFIESRIIY 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 H + ++++ + L++ +VIP L + GI + ++Q + Sbjct: 58 LYHYYQSLIGTEITKEVTFQISLIS--LREVVFMVIPLALAVAIAGILANVMQTGFLFTT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F ++ +G K ++S+ L+ +K+ +K+ +V I L + I Sbjct: 116 KPLMPNFGKLDPIKGFKNLFSLKKLIETVKTLLKVSVVMGISYFFLWSFTKELPTVIYFP 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +IL+ + L + D+ ++ +L+MSKQE+KDE KQ G+P Sbjct: 176 LPDQMAWLKEKMLILAAVILIILLVLALADLMLVRFNYFKELRMSKQEVKDEYKQMEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + I R +MM+ A ++ITNPTHYA+A+RY Q + AP ++AKG +L+A Sbjct: 236 KIKAKIRQIQMQMTRKRMMQEIPGADVVITNPTHYAVAIRYHQDKEAAPKVIAKGTDLVA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++++IA H+I I E P LAR L+K+ I IP YKAVA+++ +Y Sbjct: 296 LRIKEIALNHHIQIVENPPLARELYKKCNIGELIPENLYKAVAEVLAFVYK 346 >gi|253988526|ref|YP_003039882.1| type III secretion component protein sctu [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637892|emb|CAR66521.1| type iii secretion component protein sctu [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779976|emb|CAQ83137.1| type iii secretion component protein sctu [Photorhabdus asymbiotica] Length = 350 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 180/345 (52%), Gaps = 3/345 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S E +S++ L+ ++ S S L ++ Sbjct: 2 SGEKTEKPTPKKLRDARKKGQVTKSTEIVS-TSLILGLVGMIMVMSDYYLEHLSKLMLIP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ ++ + ++ +L L +P L + ++ + S+ Q +L+ + +KP Sbjct: 61 ANLLEKPF--PQALNHVVENLMQELVYLCLPILSVSVLLSLASHFAQYGFLLSGHSIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K+ L+ T+I ++L N +L+ I+ Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLIWVTLEGNLQGLLNLPECGSRCIIP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + +++ D + ++Q +L+MSK EIK E K+S G+P IK+++ Sbjct: 179 VLGMMLTQLMTVCGIGFIIISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M + +++I+ NPTH A+ +RY + E P++ K + A ++R+I Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A E IP+ + LAR+L++ I+ IP +A A+++ + Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVLRWLDQ 343 >gi|86151337|ref|ZP_01069552.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 260.94] gi|315123900|ref|YP_004065904.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841684|gb|EAQ58931.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni 260.94] gi|315017622|gb|ADT65715.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 362 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ ++ + LF S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTITLFMMSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|225849160|ref|YP_002729324.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] gi|225644259|gb|ACN99309.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] Length = 352 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 178/344 (51%), Gaps = 2/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + K+ + A EG S + ++ S+ + ++F+ + ++ Sbjct: 7 KTEKATPKRRQKAREEGQVLKSTDVAVALSLFVVFLVMIFYIPFLYKYLLGYFKYTFSNP 66 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 E+ T L+ L++P + + + GI + + Q + L + P + Sbjct: 67 FYLIPEESGKNFIWFTFKVLAI--LILPFVSILFIVGIVANVAQFGFLFTLKPLTPKLSK 124 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ G++R++S++ L +KS +K+ L + ++ L +++AN +S +Y Sbjct: 125 INPISGLQRLFSLSTLFELVKSILKLSLALFVSYFLVSYLLDGFLVYMTANINSQIYILA 184 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 T+ +++ + + D + +++ LKM+K E+K+E K GNPI+K + Sbjct: 185 KTIIILIMAFTFLSIPIAIADFFYRRYEYEENLKMTKDEVKEERKSYEGNPIVKKEIRKR 244 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M+ +A ++ITNP HYA+AL+Y + + AP ++AKGQ+LIA K++++A E Sbjct: 245 MRQLALKRMIAEVPKADVVITNPDHYAVALKYEKGKMKAPQVIAKGQDLIALKIKEVAKE 304 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 HN+ I E+P LARSL+ + IP FY+AVA+++ IY +K Sbjct: 305 HNVKIVEDPPLARSLYSSCEVGDYIPEDFYEAVAKILAVIYKQK 348 >gi|323490157|ref|ZP_08095377.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2] gi|323396205|gb|EGA89031.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2] Length = 362 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 177/346 (51%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K +++ +G S E + I+ ++ L + + + + Sbjct: 14 GEKTEKATPQKRQESKRKGQVAKSPEVAAAMIIIGGIVLLNSMGGWMMDRILAIYRIHFT 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++ + I L ++++A L++P +L+ M+FG IQ + + + F Sbjct: 74 QYISWEI-TPATIRTLFEQMAMNAFLLMLPIMLVGMIFGFLGNFIQVGAIFTADPIMAKF 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R+ +G KRI+++ LV KS +KI ++G L + + Sbjct: 133 ERLDPIKGAKRIFALRALVELGKSLLKIAIIGGAAFGVLWVGKDELFTLSQKSIGYSFSF 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V ++ ++ L + +L+VLD + +++ +KMSKQ+IKDE K++ G+P+IK++ K Sbjct: 193 IGSLVFQMGLIAGLILLSLSVLDYIYQKYEFEKGIKMSKQDIKDEYKKAEGDPLIKSKIK 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R ++M++ A ++ITNPTHYA+A++Y +APV++A G++ +A K+++ A Sbjct: 253 DKQRQMSMNRMIQDLPSADVLITNPTHYAIAIKYDAETMEAPVIIAMGKDYLALKIKEKA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E I E LAR+L+ QV + +P + AVA+++ IY K Sbjct: 313 KEFGIVTMENKPLARALYAQVEVGDVVPEELFLAVAEVLAYIYRLK 358 >gi|209884540|ref|YP_002288397.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] gi|209872736|gb|ACI92532.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] Length = 355 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 191/353 (54%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ D+KT+ P++K++E+A G+ S E + + + + F S+T Sbjct: 1 MAED--SDDKTQDPTAKRLEEAHKRGDVAKSIEVNTWFMVAGATFVMSSFSDSVASSITV 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL A + +++ S + + L +P LLL + I S+L+Q PV + Sbjct: 59 PLKNLLQHAGEMRVDGASLLQLAARLEIMLLVALGLPFLLLVI-AAIASHLVQHRPVWST 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P + ++S G KR++ NF K K+I +G ++ + + + + + Sbjct: 118 DPITPKWSKLSPLAGAKRLFGKQAAANFAKGLFKVITIGVVMAVVMWPEHERADAMVRLD 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +L K++ ++ +A + LD + Y W+ + KMS QE+KDE KQS G+P Sbjct: 178 PSLMLDLTRSMALKLMGTVVAMLALVAALDYLFQYRSWFERQKMSLQEVKDEYKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R +++ +R+R +MM A A+++ITNPTHYA+ALRY + AP+ VAKG +LIA Sbjct: 238 QIKGRIRALRMARVRKRMMAAVPTASVVITNPTHYAVALRYERG-MPAPICVAKGVDLIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A H++PI E LAR+L V I+ IP Y AVA++I + K Sbjct: 297 FKIREVATAHDVPIVENVPLARALHASVEIDDEIPVEHYHAVAEVIGYVMRLK 349 >gi|37527636|ref|NP_930980.1| Type III secretion component protein SctU [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787071|emb|CAE16146.1| Type III secretion component protein SctU [Photorhabdus luminescens subsp. laumondii TTO1] Length = 351 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 178/345 (51%), Gaps = 3/345 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S E +S++ LI ++ S S L ++ Sbjct: 2 SGEKTEKPTPKKLRDARKKGQVTKSNEVVS-TSLILGLIGMIMVMSEYYLEHLSKLMLIP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ ++ ++ +L L +P L + + + S+ Q +L+ + +KP Sbjct: 61 ANLLEKPF--PQAFNHVVENLMQELVYLCLPILSVSALLSLVSHFAQYGFLLSGHSIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K+ L+ T++ I+L N +L I+ Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWITLAGNLQALLRLPECGTRCIVP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + + +++ D + ++Q +L+MSK EIK E K+S G+P IK+++ Sbjct: 179 VLGIMLTQLMTVCGIGLIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M + +++I+ NPTH A+ +RY + E P++ K N A ++R+I Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTNAQALQVRRI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A E IP+ + LAR+L++ I+ IP +A A+++ + Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDQYIPADLIQATAEVLRWLEQ 343 >gi|319787087|ref|YP_004146562.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis 11-1] gi|317465599|gb|ADV27331.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis 11-1] Length = 379 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 168/353 (47%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ KTE P+ ++ E A+ +GN P SRE S + + + S Sbjct: 1 MAENEDGQEKTEQPTGRRREKAIKQGNLPRSRELSNAV-LFGSGVVAMMAGGSMFARGAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + LE + + L L +++P + + + + + Sbjct: 60 GWFRQALTPDLVMLESPGELFGYMGILLLRLVLVMLPLIGVALAACFVAPGLMGGFHFTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +R++ G+KRI+S LV KS +++ L+ + L + + + Sbjct: 120 ESLQPKPERLNPLAGLKRIFSSEGLVEVAKSLLRVALLVIACGLVLVHGFDVLKAMPGQS 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L + + L + D + W KLKM++QE+++E+K++ GNP Sbjct: 180 LEDAASTGLHFAGRLLGAAAVALVLLALADAPYQKWNWTRKLKMTRQEVREEMKETDGNP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + + +MMEA A +++ NPTHYA+AL+Y AP +VAKG + +A Sbjct: 240 QVKGKIRQMQFQMSQRRMMEAVPTADVVVVNPTHYAVALKYEGGTMRAPKVVAKGVDEMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A +H I P LAR+L+++ I+ IP Y AVAQ++ +Y + Sbjct: 300 MRIREVADQHRIATVSAPPLARALYREGEIDKEIPVRLYAAVAQVLSYVYQLR 352 >gi|308050045|ref|YP_003913611.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] gi|307632235|gb|ADN76537.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799] Length = 374 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 175/350 (50%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + +KTE + ++I+ A +G P S++ + + + C + LL + T+DL Sbjct: 2 SQSAADKTEKATPQQIKKAREKGQVPRSKDLATAALFIGCALMLLA-SADWFARGTADLL 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S T+ L +V + ++ L+ P LL + + + + P+L+L + Sbjct: 61 RYNMSLTREDLMAPDVMVRHVGASLVAMINLLSPLFLLIAVLALVAGALPGGPLLSLKNA 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + R+ GIKR++S+ +LV +KS +K+ L+ + L +L Sbjct: 121 EFKGSRIDPIAGIKRMFSMKSLVELIKSILKVSLILGTLYFLLRGRLEGLLGLYRMPLDQ 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + ++ + + + + ++D+ W + +LKM++Q++KDE KQ G P +K Sbjct: 181 AVAEGVSFLAFGILTLGVVLLFIALIDVPWQIYDHQKELKMTRQQVKDEHKQMEGKPEVK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + I + R + A +A +++TNP HYA+AL+Y DAP ++AKG + +A M Sbjct: 241 ARIRQIQQKMARSRAETAIPKADVLLTNPQHYAIALKYEPDRADAPFVLAKGTDELALHM 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A H + I E P LAR+++ ++ +P Y A+AQ++ + K Sbjct: 301 RQLARRHGVEIIEAPPLARAVYHSTQVDQMVPQALYVAIAQVLSYVLQLK 350 >gi|90423033|ref|YP_531403.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB18] gi|90105047|gb|ABD87084.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisB18] Length = 358 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 188/353 (53%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ KT+ P+ K+++DAL G+ S+E + + I + L F + + Sbjct: 1 MSDDDSS-EKTQDPTQKRLDDALERGDVAKSQEVNTWFMIAGATLVLSSFSGSVGSGLQN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ ++ + + + + L + + + +P L+L + + ++Q V + Sbjct: 60 PLRNLIENSWMIRTDGAGLMALTQSLLYAAIAAMGVPFLMLII-AALAGNMLQHRLVFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F ++S G KR++ NF+K K+I +G ++ L + + I + Sbjct: 119 EGLKPKFSKISPLAGAKRLFGKQAAANFLKGLFKVIALGAVMVAILWPERYRLDAMIRLD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +I+ K++ ++ +A + + D + Y WY K KMS QE+K+E KQS G+P Sbjct: 179 IGAIMGLTIALTLKLMAAVVAMLAAVAIADFFFQYRTWYEKQKMSLQEVKEEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I R+R +MM A +A+++ITNPTHY++AL Y AP+ VAKG + IA Sbjct: 239 HIKGRIRQIRHQRMRKRMMAAVPQASVVITNPTHYSVALSYENG-MSAPICVAKGVDSIA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A H++PI E LAR+L+ V I+ IP Y AVA++I + K Sbjct: 298 FKIREVAKAHDVPIIENVPLARALYATVKIDEEIPVEHYHAVAEIIGYVMGLK 350 >gi|317051542|ref|YP_004112658.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5] gi|316946626|gb|ADU66102.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5] Length = 354 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 104/349 (29%), Positives = 184/349 (52%), Gaps = 1/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ KTE P+ KK+E A EGN S++ S + + A ++ L F + + + Sbjct: 4 ESDQEKTEEPTPKKLEKAREEGNVAKSKDMSDTAVLFAGVMTLYFLHERMLEGFFAIMRN 63 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L T+ I+ + + L ++ P L +F + + Q + + V Sbjct: 64 YL-DLTRNTFPTINEMPSFGITILLQMLHILWPLFLALTLFALAINIGQIGLLWSSKAVA 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P + +++ +GI + +S+ NL+ KS +K+ + G + + + ++L + P I Sbjct: 123 PKWSKLNPIKGIAQKFSLKNLIEVTKSLLKVSVFGPVAYFIAKDEFGSILMMMHLTPIEI 182 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 A + K+ I I+L + ++ +D + +Q + KLKMSKQE+K+E KQ GNP +K Sbjct: 183 FATALMIIFKIWITIILIMLIVSAVDFYFQKYQHHEKLKMSKQEVKEERKQMDGNPEVKQ 242 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R +S+ R +MM ++ ++ITNP A+AL+Y AP LVAKGQ L+A+++R Sbjct: 243 RIRSLQREMAMKRMMGDVPKSDVVITNPLFLAVALKYDTEVKAAPYLVAKGQELVAQRIR 302 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A EH+IPI ++P LAR L+ + I Y+AVA+++ +IY +K Sbjct: 303 DLALEHDIPIQQDPLLARQLYDSLEPGDEITHELYQAVAEILAEIYRQK 351 >gi|322421718|ref|YP_004200941.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18] gi|320128105|gb|ADW15665.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18] Length = 352 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 185/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +KTE P+SKKI DA ++GN SRE + +++ +I L + ++ + Sbjct: 2 SDDKHSKTEKPTSKKISDAKSKGNVARSREMTSAVTLITAMIALYASSGIMLKTLQGTMK 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + ++ + L+ + ++ P LL+ ++ G+ + Q L+ + Sbjct: 62 DIFGGLASIEI-TPGGVHHLMIKEFANLGIMLTPFLLVGIISGLAVEISQGGINLSSEKL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K R++ +G+ R+++ +++ +KSF+K+ +VG + L E ++ + + Sbjct: 121 KFDLGRLNPVQGMGRLFNKDSVFQVVKSFIKMGIVGYMAYKILAEEMEGIIFLVDQDLLG 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL K+++ + L VLD+ + ++ LKM+KQE+KDE K + G+P IK Sbjct: 181 ILQFIGHISFKIVLHTCGVLIILAVLDLAFVKWRFLDNLKMTKQEVKDEHKNTEGDPAIK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +Q+ A R +M + A +++TNPTHYA+AL+Y + + APV++ KG + +A ++ Sbjct: 241 GKQRQKAFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQMALQI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A E+N+ + E LAR L+ QV S IP + AVA+++ +Y K Sbjct: 301 KIVARENNVTLVENRFLARELYAQVEEGSEIPEGLFAAVAEILAYVYSLK 350 >gi|283955760|ref|ZP_06373251.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792715|gb|EFC31493.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni 1336] Length = 362 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 186/351 (52%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + L S + + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLLMMSFMGERIVN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ G+ ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ +V +K +K+ +V TI I L + + Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + VLD+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+A+RY ++ AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AYE+N+ ++E P LAR L+K +N IP +KAVA+++ +Y+ Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347 >gi|269105053|ref|ZP_06157748.1| type III secretion inner membrane protein HrpY [Photobacterium damselae subsp. damselae CIP 102761] gi|268160688|gb|EEZ39186.1| type III secretion inner membrane protein HrpY [Photobacterium damselae subsp. damselae CIP 102761] Length = 352 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + ILA L+ +LF F+ S S L +L Sbjct: 2 SGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILA-LVAVLFAFADYYMSHISALLLLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D ++ + ++ L+ P L++ + I S + Q + + VKP Sbjct: 61 SELAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L +N T+L + + Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRDNLNTLLQIPACGLECVPT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V++++I+ + + D + +LKM+K E+K E K+ G+P IK+++ Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + + R+ +++TNPTH A+ L Y + E PV+ K + +AK+M I Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+E +P+ ++ LAR+L+ +N IP + A+++ + Sbjct: 299 AHEEGVPVMQKVPLARALYADGQLNQYIPGDLIETTAEILRWV 341 >gi|153947127|ref|YP_001399615.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 31758] gi|152958622|gb|ABS46083.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP 31758] Length = 377 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS ++ K+E P++ K+ A +G+ P S++ ++ + ++ I L F P + S Sbjct: 1 MS--NSSGEKSEKPTTGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKELIS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 V ++ + + + FLL +L + A L L+ +F + + LI Sbjct: 58 QSFVSVSQLASQLNDQGALEQFLLANLFIFAKFLA--TLVPIPLFSMLATLIPGGWNFTP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K++S GIKRI+S +N +K K +V + + + + +L + Sbjct: 116 VKLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLP 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + F +L+ + + ++DI S+H + K+KM+KQE+K E K + GNP Sbjct: 176 LEEAITQGFAQYHHILLYFIAIVVVFAIIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK+R + + R ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA Sbjct: 236 EIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R IA +H I I E P LAR+++ +N IP Y+A+AQ++ + K Sbjct: 296 LYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348 >gi|304412527|ref|ZP_07394133.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|307307186|ref|ZP_07586924.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] gi|304349169|gb|EFM13581.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183] gi|306910425|gb|EFN40856.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175] Length = 376 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 164/353 (46%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS +KTE + +K A EG P S++ + + ++ C L + + S Sbjct: 1 MS-KTPQQDKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTN-ADWFATRVS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L T+ LE ++ L + ++ P ++ + + + P+ N Sbjct: 59 GLTKYNMLLTRADLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ G+ RI+S +LV +KS +KI+L+ I+ + L + +L + Sbjct: 119 GNANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + + + + +D+ + Y +L+MS+QE+KDE Q G P Sbjct: 179 IDEAVRDGINLLSQGMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + I + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A Sbjct: 239 EIKAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A +H+I I + P L R+++ ++ IP + A+A ++ + K Sbjct: 299 LYMRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351 >gi|283834479|ref|ZP_06354220.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] gi|291070026|gb|EFE08135.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC 29220] Length = 379 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKARQEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q + D I L H L + ++ LL + + + L+ + Sbjct: 59 ESFISVHQYAQ-NINDPDIIGQFLEHHLLILGKFIL-TLLPMPVAALFASLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S ++LV+ K +K I++ ++ IS+ N L Sbjct: 117 KKILPDFSKLSPLKGISRLFSTDHLVDTGKMTLKAIVLLVMLWISVRNNVAAFLGLQELY 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ ++ V+D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKQAISDGLALYSSIMRNFVILFVFFAVIDVPLAKKMFTKGLKMTKQEVKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVRARIRRLQRQMAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E NI I E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAESNIEIVEFPKLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|260893861|ref|YP_003239958.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4] gi|260866002|gb|ACX53108.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4] Length = 356 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 180/353 (50%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS KTE + +++E+A +G S E S + LA + + ++T Sbjct: 1 MSLFGPGQEKTEPATPRRLEEARRKGQVARSAELSGALACLALVFVCYLLKEQALLTLTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +H L+ T + L L+ P L ++ IG L Q V + Sbjct: 61 GMHHSLSFLTGDL--TPASAAVALGFWGRILLELLAPFFLTALVLAIGVNLAQVGFVFSP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R+S+ G+ RI+S+ LV K+F K+++VG+I + + + + Sbjct: 119 SVLLPKLDRISITRGLGRIFSLQGLVELGKAFFKLVIVGSIAVFVIRQEIPRLFLLLETP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + ++ +++ L L +LD + +++ +L M+K E+K+E+KQ+ G+P Sbjct: 179 PLAGFTLVAGILLRLGVVVGLAYLALGLLDFFYQRNRYRKELMMTKAELKEELKQTEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K + R +++ + +AT+++TNP H A+AL+Y +AP +VAKG +A Sbjct: 239 LVKGWIRRRLRQVSLNRIRQEVPKATVVVTNPLHIAVALKYEPP-MNAPKVVAKGAGFLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++IA + +P+ E P +A+ L+++V + IPP Y+AVA++I +Y + Sbjct: 298 QKIKEIARANGVPVVENPPVAQFLYRRVEVGQEIPPALYQAVAEIIALVYRLR 350 >gi|218288313|ref|ZP_03492612.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius LAA1] gi|258511391|ref|YP_003184825.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241672|gb|EED08845.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius LAA1] gi|257478117|gb|ACV58436.1| flagellar biosynthetic protein FlhB [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 361 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 185/348 (53%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +TE + ++ ++A EG S E + + A ++ L P ++ +L Sbjct: 10 AAGERTERATPRRRQEARKEGRVARSPELTSAVAF-AAVLVALRILGPAVWGEWENLIQR 68 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + K + + L+ ++A+R+++P + + G+ + ++Q P+ + P Sbjct: 69 DLGGSALKSWTVEGVRALMATQVMAAARIMLPIAAVAAVIGLAAAVMQVRPLFVPQLLLP 128 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F+R+S G +RI S+ + +KS +K+ V + SL M++ +A ++ Sbjct: 129 DFQRISPATGWRRIASLQGALEALKSLLKLAAVVGVAYTSLASLAHQMINLSAAELDAVP 188 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 V + I + + + +D + + L+MSKQE+KDE+K++ GNP++K+ Sbjct: 189 GILGRAVFNLAIRVACAMVVIAAIDYVYQRYSLERSLRMSKQELKDELKETEGNPLVKSA 248 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + AR +MM+ ++A ++ITNPTHYA+AL Y +AP +VAKG + +A+++R+ Sbjct: 249 VRRRARQIASRRMMQNVAKADVVITNPTHYAVALAYQSDTMNAPQVVAKGADFVAQEIRR 308 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH++P+ E P LA++L++ V I IPP Y+AVA+++ +Y + Sbjct: 309 RAEEHDVPLVENPPLAQALYRTVDIGQEIPPDLYQAVAEVLAYVYRMR 356 >gi|22127347|ref|NP_670770.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10] gi|45442777|ref|NP_994316.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108809078|ref|YP_652994.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua] gi|108810729|ref|YP_646496.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516] gi|145597798|ref|YP_001161874.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F] gi|150260268|ref|ZP_01916996.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162420905|ref|YP_001604864.1| flagellar biosynthesis protein FlhB [Yersinia pestis Angola] gi|165925101|ref|ZP_02220933.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165939028|ref|ZP_02227580.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|166009039|ref|ZP_02229937.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212135|ref|ZP_02238170.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|167398548|ref|ZP_02304072.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418875|ref|ZP_02310628.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425116|ref|ZP_02316869.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466360|ref|ZP_02331064.1| flagellar biosynthetic protein FlhB [Yersinia pestis FV-1] gi|218927893|ref|YP_002345768.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92] gi|229837389|ref|ZP_04457552.1| lateral flagellar export and assembly protein [Yersinia pestis Pestoides A] gi|229840602|ref|ZP_04460761.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842847|ref|ZP_04462999.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900926|ref|ZP_04516050.1| lateral flagellar export and assembly protein [Yersinia pestis Nepal516] gi|294502771|ref|YP_003566833.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21960430|gb|AAM87021.1|AE013950_6 putative flagellar biosynthetic protein [Yersinia pestis KIM 10] gi|45437643|gb|AAS63193.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Microtus str. 91001] gi|108774377|gb|ABG16896.1| flagellar assembly protein [Yersinia pestis Nepal516] gi|108780991|gb|ABG15049.1| putative flagellar assembly protein [Yersinia pestis Antiqua] gi|115346504|emb|CAL19380.1| putative flagellar assembly protein [Yersinia pestis CO92] gi|145209494|gb|ABP38901.1| flagellar assembly protein [Yersinia pestis Pestoides F] gi|149289676|gb|EDM39753.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162353720|gb|ABX87668.1| flagellar biosynthetic protein FlhB [Yersinia pestis Angola] gi|165912984|gb|EDR31609.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. IP275] gi|165923301|gb|EDR40452.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. F1991016] gi|165992378|gb|EDR44679.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. E1979001] gi|166206881|gb|EDR51361.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962869|gb|EDR58890.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051052|gb|EDR62460.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055879|gb|EDR65660.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682265|gb|EEO78357.1| lateral flagellar export and assembly protein [Yersinia pestis Nepal516] gi|229690114|gb|EEO82171.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696968|gb|EEO87015.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705512|gb|EEO91522.1| lateral flagellar export and assembly protein [Yersinia pestis Pestoides A] gi|262360803|gb|ACY57524.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262364748|gb|ACY61305.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|294353230|gb|ADE63571.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|320016730|gb|ADW00302.1| lateral flagellar export and assembly protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 377 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS ++ K+E P++ K+ A +G+ P S++ ++ + ++ I L F P ++ S Sbjct: 1 MS--NSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKALVS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 V +A + + + FLL +L + A L L+ +F + + LI Sbjct: 58 QSFVSVAQLASQLDDQGALEQFLLANLFIFAKFLA--TLIPIPLFSMLATLIPGGWNFTP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K++S GIKRI+S +N +K K +V + + + + +L + Sbjct: 116 VKLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLP 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + F +L+ + + +DI S+H + K+KM+KQE+K E K + GNP Sbjct: 176 LEEAITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK+R + + R ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA Sbjct: 236 EIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R IA +H I I E P LAR+++ +N IP Y+A+AQ++ + K Sbjct: 296 LYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348 >gi|126176175|ref|YP_001052324.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155] gi|125999380|gb|ABN63455.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155] Length = 376 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 164/353 (46%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS +KTE + +K A EG P S++ + + ++ C L + + S Sbjct: 1 MS-KTPQQDKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTN-ADWFATRVS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L T+ LE ++ L + ++ P ++ + + + P+ N Sbjct: 59 GLTKYNMLLTRADLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+ G+ RI+S +LV +KS +KI+L+ I+ + L + +L + Sbjct: 119 GNANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + + + + +D+ + Y +L+MS+QE+KDE Q G P Sbjct: 179 IDEAVRDGINLLSQDMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + I + R + +A +++ NPTHYA+AL+Y DAP ++ KG +A Sbjct: 239 EIKAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A +H+I I + P L R+++ ++ IP + A+A ++ + K Sbjct: 299 LYMRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351 >gi|260466631|ref|ZP_05812819.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum WSM2075] gi|259029637|gb|EEW30925.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum WSM2075] Length = 360 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 220/353 (62%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+KTE + KKI D + +G P SRE +L +S +A L++ +F+ I + Sbjct: 1 MSDAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALLASFVAILVFTVFYAKDAIIDLGM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++ + ++ L + L R ++ L+L + GIG+ ++Q +P + Sbjct: 61 FLATFLEKPEAWPMDTETDVIALYKLVMLEVGRALVSLLVLLSVAGIGASVLQNMPQIVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F R+S+ +G R++ + V F+KS K+ +++ +L+E++ +L + N Sbjct: 121 ERIRPQFSRISIVKGWNRMFGVQGWVEFLKSLGKVGFAIAVLSFTLSEDHRKLLAGMITN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L+ I+ + + +DI WS W L+MSKQE+KDE KQS G+P Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNIPIFE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK Sbjct: 301 LKIREIAREHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353 >gi|148546753|ref|YP_001266855.1| flagellar biosynthesis protein FlhB [Pseudomonas putida F1] gi|148510811|gb|ABQ77671.1| flagellar biosynthetic protein FlhB [Pseudomonas putida F1] Length = 380 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 181/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ A +G S+E + + LA LL F ++ + Sbjct: 1 MAESESGQDKTEEPTEKRKRTAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + S T+ + D + L A V P L+L + + + + + Sbjct: 61 -MMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPILILLFVIAFVAPIALGGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S+N L +K+ K ++ + + L + +L + Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNALTELLKALAKFFVILVVAIVVLVNDRQALLSIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + + D+ + Q ++KLKM+KQE++DE K S G P Sbjct: 180 LDQAIIHSVQVVGWSALWMAAGLLLIAAADVPFQLWQAHNKLKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + I Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+I EH + I E P+LAR+++ I IP Y AVAQ++ ++ + Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353 >gi|17549613|ref|NP_522953.1| flagellar biosynthetic FlhB transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431867|emb|CAD18545.1| probable flagellar biosynthetic flhb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 387 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 175/355 (49%), Gaps = 7/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE S++++E A EG+ P SRE F + + L S+ Sbjct: 1 MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLATGALGLWVMG----ESIVR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118 LA + D + ++ L V+ GL+L ++ S L + Sbjct: 56 TASSFLARCLEFHRYDYTRAQEQWQYVGAQFGPLAMVLAGLILMLVLAALSPLALTRGAV 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P R+ G+KR++S+ L+ + K++LVG + + ++ Sbjct: 116 SFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPR 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + + + + + +D+ + Q+ K +M+K+E++ E ++S G Sbjct: 176 QDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG ++ Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350 >gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium beijerinckii NCIMB 8052] gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB 8052] Length = 613 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 183/349 (52%), Gaps = 2/349 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK ++ N+G S++ S+ +++ C + + + + + ++ + Sbjct: 264 AGDDKTEEATPKKKSESRNKGQIARSKDVSVAITMVICTLLISSLWG-MLTNGFKEVLIY 322 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + I L + ++P L M+ G+ + L+Q ++ +KP Sbjct: 323 FFNFPMIGDFNHATISNLAITTVIKIGSYLLPFALPIMVGGVIASLLQTGFIITAEPLKP 382 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 SF +++ G+K + S ++V+ K+ V I +V I ++ NY ++L + S+ Sbjct: 383 SFGKLNPLSGLKNMISKRSIVDLSKNLVVITIVSIICYKYISGNYQSILGISNLYLPSLS 442 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 V + I + + + +D +++M+KQE+KDE KQS G+P IK + Sbjct: 443 DEVKNLVVGIFKQICIVLVIIAGIDYFLQVRMHNKEMRMTKQEVKDEYKQSEGDPKIKGK 502 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304 K R +MM++ + AT++ITNPTH A+A++Y + + +AP +VAKG + +A K++ Sbjct: 503 IKQRQRELGMKRMMQSVADATVVITNPTHLAIAIKYEEGKDMEAPKVVAKGADYVAFKIK 562 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+ +P+ E LAR ++ +V ++ IP Y+AVA+++ + K Sbjct: 563 SIAKENEVPVIENKPLARLMYDRVEVDQDIPQDLYQAVAEILVVVMKLK 611 >gi|222824323|ref|YP_002575897.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100] gi|222539544|gb|ACM64645.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100] Length = 358 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 197/350 (56%), Gaps = 4/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ +D KTE P+SKKIEDA EGN P S++AS + ++ ++ +LF P + S Sbjct: 1 MAADD--QEKTEEPTSKKIEDARKEGNVPKSQDASAVAVLIVAVVVVLFTL-PFMGERIS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+ S +L D+ + ++ + +V+P L+ M+ G+ L+Q + Sbjct: 58 GLYRFYQSFIGIEL-DLKILQKIIIKTMIEMFIMVLPITLVIMIAGVLGNLMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F +++ G+K ++S+ ++ +K +K+ +V I + L + + Sbjct: 117 KPITPNFNKINPLNGLKNLFSLKKIIEALKITLKVGVVFGIAFVFLLQFMQELPRVELYT 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + ++++ + LD+ +Q++ L+MSKQEIKDE KQ+ G+P Sbjct: 177 IYPQLLWLRDKAIILAAVVIIAFLLIGFLDVLIVRYQYFKNLRMSKQEIKDEYKQTEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R + + R +M++ + A ++ITNPTHYA+ALRY ++ AP ++AKG + +A Sbjct: 237 LVKSRIRRLQMEAARRRMVQDVASADVVITNPTHYAVALRYDSSQEAAPKVLAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++ +AYE+N+ I+E P LAR L+K +N IPP +KAVA+++ +Y Sbjct: 297 LRIKDMAYEYNVMIYENPPLARELYKACEVNDLIPPELFKAVAEVLSFVY 346 >gi|27550054|gb|AAO18037.1| LscU [Photorhabdus luminescens] Length = 351 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 176/345 (51%), Gaps = 3/345 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S E +S++ LI ++ S S L ++ Sbjct: 2 SGEKTEKPTPKKLRDARKKGQVTKSNEVVS-TSLILGLIGMMMVMSEYYLEHLSKLMLIP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ + + ++ +L L +P L + + + S+ Q +L+ + +KP Sbjct: 61 ANLLDKPF--PQALNHVVENLMQELVYLCLPILSVSALLSLASHFAQYGFLLSGHSIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K+ L+ T++ ++L N +L I Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWVTLAGNLQALLYLPECGEKCITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + +++ D + ++Q +L+MSK EIK E K+S G+P IK+++ Sbjct: 179 VLGMMLTQLMTVCGIGFIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M + +++I+ NPTH A+ +RY + E P++ K + A ++R+I Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A E IP+ + LAR+L++ I+ IP +A A+++ + Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVLRWLEQ 343 >gi|315498431|ref|YP_004087235.1| flagellar biosynthetic protein flhb [Asticcacaulis excentricus CB 48] gi|315416443|gb|ADU13084.1| flagellar biosynthetic protein FlhB [Asticcacaulis excentricus CB 48] Length = 355 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 188/354 (53%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D ++KTE S++K+E+A +G+ S + S++A ++ + S+T Sbjct: 1 MA--DEGEDKTEEASARKLEEARKKGDVAKSADVPQALSLIAACALVMLYGDKIALSLTE 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L V +A+ + + + H L ++ LL+ G L Q + + Sbjct: 59 TLRVFVAAPHLLRDSLMGDGGLTIAHHLMGQVLPIIALILLVAGAAGAIGSLAQTGLMFS 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP F +++ G KR++ ++ L+ F K+ +K+I VG I + L + A Sbjct: 119 TEKLKPDFSKLNPMAGFKRLFGVDALIQFAKTVIKLIAVGVITWMILKGRAGDVAGLAGA 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P +L +A + + + LF+ D ++ ++KM+K E+KDE KQ+ G+ Sbjct: 179 SPLMVLPYAKEVFFSLAVAVCLFMLLEGGADYFIQKLRFSQRMKMTKTEVKDEYKQTEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R K I + R +MM +AT++ITNPTHYA+ALRY E AP+ VAKG + + Sbjct: 239 PHVKGRLKQIRMEKSRQRMMANVPKATVVITNPTHYAVALRYD-EETPAPLCVAKGVDTL 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R++A +H+I I E+P LAR+L+ + ++ IP ++AVA++I + +K Sbjct: 298 ALKIREVAGDHDIAIVEDPPLARALYAAIDVDEIIPETHFQAVAKIISFVMVRK 351 >gi|166714026|ref|ZP_02245233.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|111146902|gb|AAX40642.2| HrcU [Xanthomonas oryzae pv. oryzicola] Length = 357 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 62 DFL--ENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K +L+G ++ + + ++ P I Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLVIKAVLIGVVLWVGIRALMPMIIGLAYETPLDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++ Sbjct: 180 IAWRTLSILFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E +A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRERVVKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + AIP ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341 >gi|225850260|ref|YP_002730494.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] gi|225645107|gb|ACO03293.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] Length = 349 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + KTE + ++ + A EG S++ + +S+L + + + +T Sbjct: 1 MAKDPS---KTEKATPRRRQKAREEGQVARSQDIPIAASLLIVAVMMFAYIPFSYNILTE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 H ++ + D++ + + LV+P L+ + G+ S ++Q +L+ Sbjct: 58 YFHHTFSNPFHL-IPDLNR--GFIYESVKVLAILVLPFFLILLAIGVFSNVVQFGFLLSG 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ G+ RI+S+ L +++ +K++ + L + + Sbjct: 115 KALVPKIDRLNPVSGLGRIFSMKTLFELVRNLLKLLFASVVAYFLLMKIISESFNMSYLP 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +Y F + +++ + + ++D + + +KMSK EIK+E K GNP Sbjct: 175 LNHEIYFLFKYIIMLILAFAVISIPIAIIDFIYRKWEHEENIKMSKHEIKEERKMYEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + R +MM +A ++ITNP HYA+AL+Y + + AP ++AKG+N IA Sbjct: 235 HVKAAIRKKQREIAMMRMMAELPKADVVITNPEHYAVALKYEKGKMAAPKVIAKGKNHIA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++IA +++IP+ E+P LARSL+ I IP Y A+A+++ KIY +K Sbjct: 295 QKIKEIAKKYDIPVVEDPPLARSLYSSCEIGDMIPENLYVAIAKILAKIYRRK 347 >gi|160880828|ref|YP_001559796.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans ISDg] gi|160429494|gb|ABX43057.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans ISDg] Length = 373 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 3/355 (0%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 ++ KTE ++KK+EDA EG S++ S +LA + + F Sbjct: 18 AKEGPGGEKTEEATTKKLEDARKEGQVARSQDLITASGLLALFMVIKLFSGYIAGGFLDA 77 Query: 62 LHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 E++++ + L+ + ++ + +P + ++ + Q L Sbjct: 78 FSKSYKEIETLAKEEMTYQIGSKLMNQMGINILLICLPVFITGVVVAFVVNIFQVKWKLT 137 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P F +++ G K++ S++ ++ +KS +K+ ++ I+ +L + + Sbjct: 138 GKPLQPKFNKINPLSGFKKMLSMDKIMELVKSIIKVGIIIYIVYNALKDELGKLYLLYEM 197 Query: 180 -NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 N ++ + V + I I + + + D + ++ ++M+KQEIKDE KQS G Sbjct: 198 GNLEVVIAYIGSIVLDLGIKISVLFIVVGLADFIYQKIKFKKDMRMTKQEIKDEFKQSEG 257 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK++ K R + +MM+ A ++ITNPTH+A AL+Y + ++AP+L+AKG +L Sbjct: 258 DPQIKSKIKQKMRQASQRRMMQRLPEADVVITNPTHFACALKYDKEVSEAPILIAKGADL 317 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+++IA E+ IPI E LAR L+ V I S IP Y+ VA+++ +Y K Sbjct: 318 LAAKIKEIAKENEIPIVENKPLARMLYYNVDIESEIPGELYQMVAEVLAYVYSLK 372 >gi|295696131|ref|YP_003589369.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912] gi|295411733|gb|ADG06225.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912] Length = 370 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 174/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE P+ ++ ++A EG A S + + +LA ++ + I L Sbjct: 15 EEKTETPTPRRRQEARKEGQAARSADLTAALVLLAAVLAVRALGETWIDE-WRRLFASFI 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + + + + +I LLL G+ + IQ + P + Sbjct: 74 TGSPIQFSTPDGWLAWMGGQVMGVFSSLILFLLLPAAAGLATGFIQVGGLFAFKAASPQW 133 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 KR+S EG +R++S+ +LV K +KI ++G I + + + +P ++ Sbjct: 134 KRISPVEGFRRLFSLRSLVEGAKMILKIAILGGIGYSLARQIFESSGSLGGMDPTALAGW 193 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + V + L + L +LD + + +L+M+KQE+K+E K++ GNP IK + + Sbjct: 194 TGDQLWNVALEASLALLGLAILDAWYQRVSFERQLRMTKQEVKEEFKRTEGNPTIKRKIR 253 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R+ + +MM+ +AT++ITNPTHYA+ALRY D PV++AKG + A ++R+ A Sbjct: 254 ERQRALAQRRMMQEVPKATVVITNPTHYAVALRYEPDSMDTPVVIAKGADAWAWRIRETA 313 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +P+ E P LAR L V I AIP V ++AVA+++ +Y + Sbjct: 314 RHYGVPVVENPPLARRLHAMVEIGEAIPEVLFQAVAEVLAYVYRLR 359 >gi|296447442|ref|ZP_06889367.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium OB3b] gi|296255062|gb|EFH02164.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium OB3b] Length = 358 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 116/349 (33%), Positives = 206/349 (59%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE++ D++TE S KKI DAL +G P++R+ ++ L L+ + F + Sbjct: 1 MSESEDDDSRTEEASEKKILDALEQGKTPVARDVAVAVLFLGFLLCVSFVIETVGPRLAL 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++L++ Q L + + ++ R + P L +FM+ G+ S +Q P L Sbjct: 61 SMELMLSNVGQFSLANGADAFMQSRAVAEEIGRFLAPMLSIFMITGLLSAAMQGAPRLVF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S ++G+KRI+ + +V +KS KI ++G + SLT + ++D + Sbjct: 121 KRIEPDLSRISPQQGLKRIFGVTGVVELVKSIAKIAVIGGAVVFSLTVDRDLIIDAMRME 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + ++ ++ + + + + D+ WS +W ++MS+QE+K+E KQS G+P Sbjct: 181 PAHLPSLLLKLIIRLTSVVCIPVVLIALADLAWSKFKWRRDMRMSRQEMKEEHKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R +S+A R R +MM +AT++I NPTHYA+ALRY++TE AP +VAKG++L+A Sbjct: 241 LVKARMRSLALERSRKRMMAQVPQATMVIANPTHYAIALRYVRTEGGAPTVVAKGKDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 K+R+IA H +P+ E P LAR+++ V ++ IP FY+ VA+LI+ + Sbjct: 301 LKIREIAEAHGVPVLERPELARAMYNHVEVDQMIPSEFYRPVAELIHFL 349 >gi|54307250|ref|YP_128270.1| FlhB flagellar biosynthetic protein [Photobacterium profundum SS9] gi|46911670|emb|CAG18468.1| Hypothetical FlhB flagellar biosynthetic protein [Photobacterium profundum SS9] Length = 375 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSEN + +KTE PS +K+ A EGN P S+E L + LL FS + + Sbjct: 1 MSEN-SSQDKTEQPSQQKLRKAREEGNLPRSKELVTALMTLGAAL-LLSAFSSDLAHMFD 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L + ++ + ++ L+ S + P L ++ I + +I+ +++ Sbjct: 59 EVATLNLALPKKAAFEPEFMLKHLSFSLTSMIFTISPIFGLLLLVTILANIIRGGWNISV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +P +++ GIKR++S +LV +KS +K+ L+G + L+ + ++ Sbjct: 119 TAAQPKLSKLNPLSGIKRMFSTKSLVELVKSILKVSLIGGTLYWLLSNHLTQIIALQRLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L L + + VL++ ++ + +LKM+KQE+K+E K S G P Sbjct: 179 MTEAILQTVDILWQGLFSFGLALLLIAVLELPYAGWDYTKQLKMTKQEVKEEHKNSEGKP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + + + +M + +A ++ITNPTHYA+AL+Y + AP ++AKG + +A Sbjct: 239 EVKAKIRQLQQQMSQRQMHKTVPQADVVITNPTHYAIALKYDLDKASAPFVLAKGTDQMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +MRKIA HN PI E P+L R+++ IP Y AVA ++ ++ + Sbjct: 299 LEMRKIARHHNCPIVEIPALTRAVYYSTNEWQEIPAPLYVAVAHILTFVFQME 351 >gi|13472564|ref|NP_104131.1| flagellar biosynthesis protein FlhB [Mesorhizobium loti MAFF303099] gi|14023310|dbj|BAB49917.1| flagellar biosynthetic protein; FlhB [Mesorhizobium loti MAFF303099] Length = 360 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 130/353 (36%), Positives = 218/353 (61%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+KTE + KK+ D + +G P SRE ++ +S +A L++ +F+ + ++ Sbjct: 1 MSDAADKDSKTEEATEKKVRDTIEQGKLPHSRETAILASFVAILVFTVFYAKDAVINLGM 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + L + + ++ L + L R V+ L+L + GIG+ ++Q +P Sbjct: 61 FLSMFLEKPEAWPMNTETDVIDLYKIVMLEVGRAVVSLLVLLTVAGIGASVLQNMPQFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S+ +G R++ V F+KS K+ ++T +L+E++ +L + N Sbjct: 121 ERIRPQLSRISITKGWNRMFGAQGWVEFLKSLAKVGFAIAVLTFTLSEDHSKLLAGMITN 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +L+ I+ + + +DI WS W L+M+KQE+KDE KQS G+P Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMTKQEVKDEFKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K+R +S+AR R R +MM A RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA EHNIPIFE+ +LARS++KQV +++ IP FY+AVA+L+ +Y KK Sbjct: 301 LKIREIAKEHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353 >gi|311030112|ref|ZP_07708202.1| flagellar biosynthesis protein FlhB [Bacillus sp. m3-13] Length = 362 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 176/347 (50%), Gaps = 1/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE + KK +D +G S + + ++A + L F P + T L Sbjct: 13 SGEKTEKATPKKKQDTRKKGQVAKSADVNTSFVLIAVFLCL-FAIGPWMKDETLKLFEHS 71 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + + + L + ++ P +L ++ + + +Q P+ + + Sbjct: 72 FRVYLLEEVTVQKVHMIFLELIMQLIWIIGPIMLAALLGAVIANYLQVGPLFSTEAIHMK 131 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ +G KRIYS+ +V +KS +KI+ VG I L + +L N H Sbjct: 132 LNKLDPIQGFKRIYSVRAIVELVKSMLKIVFVGIITFSILWMSLEEVLILSQKNLHEAFA 191 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ + + L++ D + + + ++MSK ++KDE K++ G+P+IK++ Sbjct: 192 FLGTLTVRMGLFAGGALLFLSIFDYLYQKYDYEKNIRMSKHDVKDEYKKAEGDPLIKSKI 251 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K R +MM+ +A +IITNPTH+A+AL+Y +++ DAP+++AKG + +AKK+++ Sbjct: 252 KQKQREMAMQRMMQDVPQADVIITNPTHFAIALKYDESKGDAPIVLAKGVDYVAKKIKEK 311 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EHNI E LARSL+ Q I AIP F++AVA+++ +Y + Sbjct: 312 AKEHNIVTVENKPLARSLYSQAEIGDAIPEEFFQAVAEILAYVYRLQ 358 >gi|254228241|ref|ZP_04921670.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25] gi|262394130|ref|YP_003285984.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25] gi|151939314|gb|EDN58143.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25] gi|262337724|gb|ACY51519.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25] Length = 351 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 176/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KK+ DA +G S+E + ILA +I L F F+ S S L +L Sbjct: 2 SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVL-FAFADYYMSHISALILLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D +V + ++ + L+ P +L+ + I S + Q + + VKP Sbjct: 61 SKLAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + + Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWLTLRGNINALMQIPTCGLECVPT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +++++I+ + + D + KLKMSK E+K E K+ G+P IK+++ Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMIAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E +P+ ++ LAR+L+ ++ IP +A A+++ + Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWL 341 >gi|323139657|ref|ZP_08074699.1| type III secretion exporter [Methylocystis sp. ATCC 49242] gi|322395089|gb|EFX97648.1| type III secretion exporter [Methylocystis sp. ATCC 49242] Length = 356 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 114/349 (32%), Positives = 201/349 (57%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+D P+++TE + KKI D + +G P SR+ I A L F + Sbjct: 1 MSESDDPESRTEEATEKKIRDTVEQGKLPSSRDVGTAFGIFALLGAFSFLVDALTPRLIE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L +L+A+ + L + ++ ++L R + P LL F++ G+ + Q P Sbjct: 61 ALGLLIANVGELPLRSGADAYRYVSVVNLELGRYLGPILLGFVIAGLVASFTQGAPQFVF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + V+P R+S+ G KRI+ + +V +KS VK+I+VG + + ++ ++D + + Sbjct: 121 DRVQPDLSRISIIAGWKRIFGLAGVVELLKSVVKMIIVGGAVIFAGLSDHAALVDAMRTD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + + ++ + + L D W+ +W L+MS+QE+K+E KQ+ G+P Sbjct: 181 PSRLPGLTLRLIIHLTSVVAISVGVLAAADFVWARFKWRRDLRMSRQELKEEFKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R +S+A R R +MM + AT ++ NPTHYA+ALRY++ E AP+++AKG++LIA Sbjct: 241 LVKARMRSLAMDRSRRRMMASVPNATFVVANPTHYAIALRYVREEGGAPLVLAKGKDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 K+R+IA +N+P+FE+ LAR+++ V ++ IP FY+ VA+LI+ + Sbjct: 301 LKIREIAERNNVPVFEKKELARAMYDMVEVDRMIPAEFYRPVAELIHFL 349 >gi|51246526|ref|YP_066410.1| flagellar biosynthesis protein FlhB [Desulfotalea psychrophila LSv54] gi|50877563|emb|CAG37403.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea psychrophila LSv54] Length = 355 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 175/354 (49%), Gaps = 3/354 (0%) Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E +TE SSK+ ED +G S+E + L++ F+ + Sbjct: 1 MAEEAPTGGERTEDASSKRREDFRKKGQVAQSKEVQTAALFTLLLLFWSFYIGIFGRKLL 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + + S S + L + + ++ P LL ++ GI S Q + Sbjct: 61 ILIQSIWQSLESFS-PTPSQTMQLALFVIKECAIILAPLFLLVVIVGIASSFFQIGWLFT 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P F +++ G R +S + + +KS K+ L+G + ++ E++ L Sbjct: 120 TKPLSPDFSKMNPIAGFGRFFSKKSFIEVIKSLSKVTLIGWLAFSTIIEHFNEALVQTDT 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P + L T ++ + + L +D + + K+KM+KQE K+E K+S G+ Sbjct: 180 SPMATLVFIGVTASLIVAKVCAILILLAFIDFLYVKWEMEEKMKMTKQEQKEEFKESEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK++ ++I + R +MM A +IITNPTH ++ALRY ++ AP++VAKG + + Sbjct: 240 PHIKSQIRAIQQEMARKRMMADVPGADVIITNPTHISIALRYRAGQDQAPIIVAKGVDFV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+IA E++IPI E P +AR L K + I ++P + VA+++ +Y K Sbjct: 300 AMKIREIARENSIPIIENPPVARMLHK-IEIGGSVPEEMFAVVAEILAHVYSLK 352 >gi|260438787|ref|ZP_05792603.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM 2876] gi|292808776|gb|EFF67981.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM 2876] Length = 370 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 99/358 (27%), Positives = 182/358 (50%), Gaps = 6/358 (1%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +++ +TE ++KK++DA +G SR+ + S+L I L + ++ Sbjct: 10 AKDGPGGQRTEPATAKKLKDARKKGQVAKSRDLTSSVSLLVFFIILKIYVGTMGTKFINE 69 Query: 62 LHVLLA-----SATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 V+ +AT +L +S ++ L +++P + ++ L+Q Sbjct: 70 FKVIYKKMGEVNATSLELNSLSRFFKNYMSDAILDMLVILLPIMAAAVLVAFVGDLVQVK 129 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 +KP + + GIKRI+S+ LV +KS + + + L + + + Sbjct: 130 WKPTAEPMKPKADKFNPVNGIKRIFSVKTLVQLLKSIAIVAICMLVTYNKLKKEIGLLYN 189 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 F + + + + + V I I + + + D + Y ++ + +KMSKQE+KDE K Sbjct: 190 FYNISLEAAIIRMGDVLLDVGITISVIYLIVGIADFIFEYVKFKNDMKMSKQELKDEWKD 249 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + GNP +KN+QK R +MM+A A ++ITNPTH+A+AL+Y Q APV+VAKG Sbjct: 250 TEGNPEVKNQQKRRMNEASRRRMMQAVPEADVVITNPTHFAVALKYEQNSGKAPVVVAKG 309 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ +A+K+++ A ++ + I E LAR L+ V + S IP Y+AVA+++ ++ K Sbjct: 310 EDYLAQKIKETARKNQVEIVENKPLARMLYYNVDLGSEIPQELYQAVAEVLAFVWKVK 367 >gi|223038713|ref|ZP_03609006.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267] gi|222880115|gb|EEF15203.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267] Length = 358 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 193/353 (54%), Gaps = 10/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYS 57 M+ D KTE P+SKKIEDA +GN P S++ + F +I + + LL F + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARKDGNVPKSQDLAGFVTIAVAIFVVVALLGFIKDQFFM 58 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + + L+ RKL I+ + L +++P + + G+ + L+Q + Sbjct: 59 LYNYYQDLIGQEFTRKLLFSVTIITIFRTLL-----IILPIAVCIAIAGVFANLMQFGFI 113 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++P+ +++ +G+K ++S+ L++ +K +K+ V T+ + + + Sbjct: 114 FTTKPLEPNLNKINPLKGLKNLFSLKKLIDGIKMILKVTAVFTVGFLMFLSFIKELPHTL 173 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L + + ++L+ + + +LD+ Q++ L+MSKQEIKDE KQ Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRFQYFRDLRMSKQEIKDEYKQME 233 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P +K R + + R++MM+ +A +IITNPTHYA+ALRY +T+ APV++AKG + Sbjct: 234 GDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAKGVD 293 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A ++++I ++N+ I E P LAR L+K +N IP ++AVA+++ +Y Sbjct: 294 FLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346 >gi|237755398|ref|ZP_04584025.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium yellowstonense SS-5] gi|237692439|gb|EEP61420.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium yellowstonense SS-5] Length = 350 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 182/353 (51%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE + K+ + A EG S + S+ +S+ I L+F+ + Sbjct: 1 MAKDP---RKTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLVG 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ ++ S ++ + + L +P +L+ + GI S +IQ + L Sbjct: 58 YFKYTFSNPLYLIPDNGSMFIWFTLKI---LAILTLPVILILFIVGIASNVIQFGFLFTL 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++++ GIKRI+S+ L +K+ K+ + + + L +++ + Sbjct: 115 KPLTPKLDKLNVISGIKRIFSLTVLFELIKNLAKLTVALFLSYFLVKYLLNDFLVYMTGS 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ +Y T+ +++ + + D + +++ LKM+K E+K+E K GNP Sbjct: 175 INNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSYEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K + R +M+ +A ++ITNP HYA+AL+Y + + AP ++AKGQ+LIA Sbjct: 235 LVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVIAKGQDLIA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K++++A EH I I E+P LAR+L+ I IP Y+AVA+++ +IY K Sbjct: 295 QKIKEVAKEHGIKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKAK 347 >gi|27381988|ref|NP_773517.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA 110] gi|27355158|dbj|BAC52142.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 125/353 (35%), Positives = 210/353 (59%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE P+ KK+ D+L +G P+SREAS+F+S+ A ++ +F G+ +T Sbjct: 1 MAETTDQESKTEEPTEKKVRDSLEQGKIPVSREASIFASMAALMVIQMFLIGQGVQQLTP 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL L + LLT + L A R ++P L++ ++FG+ S L+Q P L L Sbjct: 61 TLKSLLDDPEGFPLATGADAQNLLTVVGLEALRFLVPLLVVLLVFGLASSLLQNAPNLVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+S G R++ LV F KS K+ V ++ L + + + + Sbjct: 121 QRIMPDLSRISPVSGWNRLFGTQGLVEFAKSLFKLASVTVVVAFVLRSSEAKAFEAMYTD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ +++ I + L +D+ W+ W +L+M++QEIKDE KQ+ G+P Sbjct: 181 PVALPEMILNIAMRIVSAICIATIVLVAIDLAWARFHWRRELRMTRQEIKDEHKQAEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R +S+AR R R +M+ + SRAT++I NPTH+A+ALRY + EN AP++VAKG ++IA Sbjct: 241 LVKARLRSLARDRSRQRMIASASRATLVIANPTHFAIALRYNREENPAPLVVAKGMDVIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A ++ IP+ E LAR+L++ V ++ IP F++ VA++IY + K+ Sbjct: 301 LKIREVAEKNRIPVIENKVLARALYEAVQVDQVIPAEFFRPVAEIIYFLQSKQ 353 >gi|148976240|ref|ZP_01812964.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3] gi|145964334|gb|EDK29589.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3] Length = 379 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 181/353 (51%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ +K+E PS K+ A EG P ++E ++++ + Y + I Sbjct: 1 MSDHQDSGDKSEQPSQHKLTKARREGQVPRAKEFVSSITLISVVAYYVLNV-DMIKQSFI 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L ++ + + IV L+ S L P L+ M+ I + + + Sbjct: 60 ELFLVSFHFDSQTVSQPMAIVELVGTALFSMITLFFPLLIYQMIAAIVGSTLLGGWIFSP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P ++++S +G+KRI+S ++V K+ +K+ L T++ ++ + + +SA+ Sbjct: 120 SLLIPKWEKISPLKGLKRIFSSQSIVELFKNVIKVSLFFTLLYWVISSYISVITNLVSAH 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ + L +LL + + D + H++ ++KM+KQE+KDE K+ G P Sbjct: 180 FDTVVLSVATITIEYLGYLLLIVLLFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQEGRP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + E +A++++TNPT YA+AL Y ++ +AP +VAKGQ+ +A Sbjct: 240 EVKARIRQIQTQNAKRSANERVPKASVVLTNPTRYAIALIYDLSQAEAPFVVAKGQDDVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A +H + I E P+L R+++ I+ +P + A+A ++ + K Sbjct: 300 LYIRELAAKHEVEIVESPALTRAIYNTTQIDQMVPNQLFIAIAHILTYVNQLK 352 >gi|323210683|gb|EFZ95561.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 338 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 84/306 (27%), Positives = 164/306 (53%) Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107 ++F + + + R + D + I+ + L +A ++P + ++ + Sbjct: 1 MWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVAL 60 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 S ++ + + ++P F +++ GIKR++S +K+ +K LVG + L Sbjct: 61 ISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLW 120 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 N+ M+ ++ +P + +A V ++++L + + D+ + KL+MS+Q Sbjct: 121 HNWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQ 180 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 +I+DE K+S G+P +K + + + R+ + +MME +A +I+TNPTHY++AL+Y + + Sbjct: 181 DIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMS 240 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AP +VAKG LIA ++R+I EH +P E P LAR+L++ I IP Y AVA+++ Sbjct: 241 APKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLA 300 Query: 348 KIYHKK 353 ++ K Sbjct: 301 WVWQLK 306 >gi|295706267|ref|YP_003599342.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319] gi|294803926|gb|ADF40992.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319] Length = 360 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 178/346 (51%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D+ +G S++ + +L +Y LF + + L Sbjct: 13 GEKTEKATPKKKQDSRKKGQVAKSQDVTTALILLMVFLYFLFGAKQFLQQMMKLLREAFQ 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + ++ + + HL S + P +L + +G+ +Q + + ++P Sbjct: 73 TYMLEEV-TAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQPKL 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++++ G KRI+++ LV +KS +KI+ +G + L + +L+ + L Sbjct: 132 EKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFILWIHIEDVLNLSQKSIGDSLVV 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V ++ + L + L++LD + + ++MSKQ+IKDE K G+P+IK++ K Sbjct: 192 LSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLIKSKIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K++ IA Sbjct: 252 QKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQKIKGIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H I + E LAR+LF Q + A+P F+KAVA+++ +Y + Sbjct: 312 KSHEIIMVENRPLARALFDQTKVGDAVPEEFFKAVAEILAYVYRIQ 357 >gi|299069778|emb|CBJ41057.1| flagellar export pore protein [Ralstonia solanacearum CMR15] Length = 387 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 174/355 (49%), Gaps = 7/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D+ KTE S++++E A EG+ P SRE F + L S+ Sbjct: 1 MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLATGAGGLWVMG----ESIVR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118 LA + D + ++ L V+ GL+L ++ S L + Sbjct: 56 TAASFLARCLEFHRYDYTRAQEQWHYVGAQFGPLATVLAGLVLMLVLAALSPLALTRGAI 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + V P R+ G+KR++S+ L+ + K++L+G + + ++ Sbjct: 116 SFKPVTPDITRLLGMHGLKRMFSVQGLLELPRLLAKLVLLGGVGWWLILHYRDDFVELPR 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + + + + + +D+ + Q+ K +M+K+E++ E ++S G Sbjct: 176 QDLIAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG ++ Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350 >gi|219854407|ref|YP_002471529.1| hypothetical protein CKR_1064 [Clostridium kluyveri NBRC 12016] gi|219568131|dbj|BAH06115.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 609 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 190/348 (54%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + +K DA +G P S+E +L ++LA + +L V + + Sbjct: 264 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVILALGGYVGSQVKTTMITF 323 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L D + + + + + +P + ++ G+ + Q ++ + +KP Sbjct: 324 FNNYLVMSL-DYASVQKITFITLWRLAIIFLPVAVPILVMGVLANFFQTRGLVTSHPLKP 382 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F +++ G KR++S+ +++ +KS I +VG I + +NY ++ S N SI+ Sbjct: 383 DFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLSSLNFESIV 442 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + + + ++D + Q+ L+MSKQE+K+E KQ G+P IK++ Sbjct: 443 KAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDEGDPQIKSK 502 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+L+A +++K Sbjct: 503 IKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQDLVALRIKK 561 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A + ++PI E P LAR ++K+V ++ IP Y+AVA+++ +Y + Sbjct: 562 VAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 609 >gi|167630310|ref|YP_001680809.1| flagellar biosynthetic protein flhb, putative [Heliobacterium modesticaldum Ice1] gi|167593050|gb|ABZ84798.1| flagellar biosynthetic protein flhb, putative [Heliobacterium modesticaldum Ice1] Length = 362 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 185/346 (53%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P++K+ +A +G S+E + +L + L + + + LL Sbjct: 14 GEKTEKPTAKRRSEARKKGQVAKSQEVNTALILLFGFLALRSLGVQTMDGMERMMVYLLG 73 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + T ++ +S ++ T +++ ++ P +L M G+ + +Q + + +K ++ Sbjct: 74 TVTLEEVTPVS-VITTGTTIAIRTMLMIAPFMLAAMAAGLLASYLQVGFLFSSEGLKMNW 132 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++++ G+K I+S +LV +KS +K+ ++ + ++ ++ + + + + Sbjct: 133 GKLNVIAGLKNIFSSRSLVELVKSLLKVSVISYVAYSAVVKHLHLFPKLLGMDVQTAVAA 192 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + + + + LD G+ +++ LKMSKQE+KDE KQ+ G+P IK++ K Sbjct: 193 ISEVAYDVGFRVAVLLLLVAALDYGYQWYKHEESLKMSKQEVKDEFKQAEGDPQIKSKIK 252 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A ++ITNPTH+A+AL+Y APV++AKGQ+ +A K+R +A Sbjct: 253 QRMREMAMRRMMQELPKADVVITNPTHFAVALKYESGSMTAPVVIAKGQDYVALKIRAVA 312 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H IP+ E+ LAR+L++ V I IP ++AVA++ +Y K Sbjct: 313 QDHGIPLVEDKPLARTLYRAVEIGQEIPAELFQAVAEVFAFVYRLK 358 >gi|168334564|ref|ZP_02692720.1| flagellar biosynthetic protein FlhB [Epulopiscium sp. 'N.t. morphotype B'] Length = 366 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 175/350 (50%), Gaps = 2/350 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE +SKK D +G S E + +LA I + + ++ + Sbjct: 14 EQEGRTETATSKKRSDVRKKGQVVKSAELNTALILLAFFIIMRILAPYYVSQCSNVFKNI 73 Query: 66 LASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 +A +E + H + ++ ++ + ++ + + Q + L +K Sbjct: 74 MAQMRTIVVEFNKQHFLHIIRDSLINIILINGILFIVLFLVAFLASYWQVGFKVTLEPLK 133 Query: 125 PSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P + + G K+I+ I +L+ +K+ K+I++GT+ ++ + L F + Sbjct: 134 PKLNKFNPVNGFKKIFGIRDSLIELLKNLFKVIILGTVFYNTIISQIPSFLGFYDLTIQN 193 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I + +R++ + L L D W +++ +KM+K ++K+E KQS G+P +K Sbjct: 194 IAIYVADVIRQIGTNVGLAFLVLAYGDYRWQKYKFEDSIKMTKHDVKEEFKQSEGDPAVK 253 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ + R +MM+ A +IITNPTH+A+A+ Y + + APV+VAKG + +A+++ Sbjct: 254 SKIRQKMREMSISRMMKTVPEADVIITNPTHFAVAIYYDRVKGIAPVVVAKGTDNMAQRI 313 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IA N+ I E LAR+L+ V I SAIP Y+AVA+++ +Y + Sbjct: 314 KEIAAISNVQIVENKPLARALYYTVDIGSAIPQELYEAVAEVLAFVYRLE 363 >gi|258514018|ref|YP_003190240.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans DSM 771] gi|257777723|gb|ACV61617.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans DSM 771] Length = 354 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 193/353 (54%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ KTE + +K+ A +G S + + +LA ++ + S+ Sbjct: 1 MA--QGGQEKTEKATPRKLLQARRKGQVAKSSDLNAAVLMLAVVLLFYSIKQQQLSSMYK 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LA+ TQ + +S ++ L+ S+ +L+ P L++ ++ + +Q V + Sbjct: 59 YFSWYLANFTQYRESQVS-LMQLMVSFSIYYIKLMAPVLIVVVIVALLINFMQVGLVFSS 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP KR + EG KRI+++ +LV K+ K++++G I ++ + +L A Sbjct: 118 ESIKPQLKRANPIEGFKRIFTVRSLVELAKNIFKLLVIGGITYNLISGRFNELLLIFYAT 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P I + ++L + + +LD + +++ ++MSKQ+IKDE KQ+ G+P Sbjct: 178 PAMIFQTVSGFILRILGWGGIVYFAMALLDYLYQRYEFQKSMRMSKQDIKDEYKQTEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K++ + + R ++ E RAT+++TNPTH+A+ALRY + + D P++ AKG + +A Sbjct: 238 LLKSKLREMQRKMSLSRIREEMPRATVVVTNPTHFAVALRYSEGDADVPLVTAKGADYLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +MR++A E+N+P+ E+ LAR L+ +V + + IP Y++VA+++ +Y KK Sbjct: 298 LRMREMAKEYNVPVIEQRELARLLYDRVEVGTEIPYELYQSVAEILAMVYKKK 350 >gi|51894124|ref|YP_076815.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM 14863] gi|51857813|dbj|BAD41971.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM 14863] Length = 361 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 2/346 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +TE P+ ++++ A EG S + ++A + L + VT + + Sbjct: 8 ERTEEPTPRRLQKAREEGRVARSTDLVAGLGLVAATLALRGLGGYSVQQVTGGMVGAFET 67 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 +L ++ +L R V+P L+ + G+ + +Q + L + P F Sbjct: 68 LRPLEL-TPETTAAVMQDWALIGLRAVLPIALVVVAIGVVAGTLQTRFIFTLRALVPRFA 126 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+ RI+S+ + +K +K+ +G I S+ + I+ + L Sbjct: 127 TLNPITGLTRIFSLRTVTELVKGLIKLAAIGYIAYRSVRGLVPQFPNLIAQTVPAGLSAI 186 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V V++ + L + VLD G+ Y ++ ++M+KQE+K E ++ G P +K+RQ+ Sbjct: 187 ADMVLDVMLAVGLAYLVVGVLDYGYQYWEFRRSMRMTKQEVKQEHREQEGAPELKSRQRQ 246 Query: 249 IARSRIR-HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R + ++ A +++TNPTH+A+AL+Y +++AP +VAKG +L+A +++KIA Sbjct: 247 RMRELAMRRRALKEVPGADVVVTNPTHFAVALKYEAAKDEAPRVVAKGADLLALEIQKIA 306 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H++P+ E +LAR L+ V + IPP +Y+AVA+++ +Y+ + Sbjct: 307 RAHDVPLVENRTLARGLYYDVEVGRLIPPEYYQAVAEVLAFVYNLR 352 >gi|153831633|ref|ZP_01984300.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] gi|148872143|gb|EDL70960.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01] Length = 375 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE S +K++ A EG P ++E + LA ++ I+ S Sbjct: 1 MSEQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQL-NSIWESMS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T+ LE +V L +++P + ++ GS ++ + Sbjct: 59 GVFRYNMTLTKADLESPKQLVEHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +V P +++ GIKRI+S +LV +KS K++++ I+ L + +L + Sbjct: 119 ANVMPKLSKLNPISGIKRIFSTRSLVELVKSTFKVLVIFGILYGYLDNHLQPLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + VLDI + + +L+M+KQE+K+E K + G P Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + K Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351 >gi|330447934|ref|ZP_08311582.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492125|dbj|GAA06079.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 375 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + +KTE + +KI A +G P +++ + + +A +++ F I+ V + Sbjct: 1 MS-QSSAQDKTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVFFYFQI-DVIWQVLN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L + L +L++P L + I S L+ + Sbjct: 59 SVFQLNMTISHDDLRSPWLAIEALGTSLAIIIQLLLPLFALIFITAIASSLLLGGWLFYP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L + Sbjct: 119 AGVLPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDVNLSRLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++++ + + ++DI + + +LKM+KQE+K+E K + GNP Sbjct: 179 LKQGVSLIMTILFHGILLMGVALFIFGLIDIPYQKWEHAKELKMTKQELKEEFKTNEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I + R K+ +A +A ++I NPTHYA+A++Y T ++AP +VAKG + A Sbjct: 239 EIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAPFVVAKGIDEAA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IA +H++ I P L R+++ I AIP Y AVA ++ + K Sbjct: 299 MHIQTIAKQHDVEILRSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351 >gi|269960154|ref|ZP_06174530.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3] gi|269835125|gb|EEZ89208.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3] Length = 375 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE S +K++ A EG P ++E + LA ++ I+ S Sbjct: 1 MSEQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQL-NSIWESMS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T+ LE+ +V L +++P + ++ GS ++ + Sbjct: 59 GVFRYNMTLTKADLENPKQLVEHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +V P +++ GIKRI+S ++V +KS VK++++ I+ L + +L + Sbjct: 119 ANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYLDNHLQPLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + V+DI + + +L+M+KQE+K+E K + G P Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + K Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351 >gi|269967242|ref|ZP_06181306.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] gi|262284522|gb|ACY41059.1| VscU [Vibrio alginolyticus] gi|269828098|gb|EEZ82368.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] Length = 349 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 176/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KK+ DA +G S+E + ILA +I L F F+ S S L +L Sbjct: 2 SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVL-FAFADYYMSHISALILLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + +D +V + ++ + L+ P +L+ + I S + Q + + VKP Sbjct: 61 SKLAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + + Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +++++I+ + + D + KLKMSK E+K E K+ G+P IK+++ Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E +P+ ++ LAR+L+ ++ IP +A A+++ + Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWL 341 >gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium butyricum 5521] gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 612 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 184/349 (52%), Gaps = 2/349 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK D+ +G S++ S+ +++ C I + ++ I + Sbjct: 264 ASDDKTEEATPKKKSDSRKKGQIARSKDVSVALTMVVCTIAVSACWNMMINGFKEVMIYF 323 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +S L+T + A L+ P L M+ GI + L+Q ++ +KP Sbjct: 324 LQLPMLDNFDKLSLTGILITVIMRVAYGLL-PIALPIMVGGIIASLMQTGFLITGEPLKP 382 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 SFK+++ GIK + S ++V+ K+ V I +V I ++ NY ++ + S+ Sbjct: 383 SFKKLNPLSGIKNMISKRSIVDLCKNLVVISIVSIISYRYISSNYQKIISMSNIYIPSLN 442 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 V + I + + + +D + LKM+KQE+KDE KQ G+P +K + Sbjct: 443 VEIKTLVLDIFKQICIALIVIAAIDYFVQFKMHNKDLKMTKQEVKDEYKQQEGDPQLKGK 502 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT-ENDAPVLVAKGQNLIAKKMR 304 K R R +MM++ S AT++ITNPTH A+AL+Y + + +AP ++AKG + +A K++ Sbjct: 503 IKQKQREMSRQRMMQSVSDATVVITNPTHLAIALKYEEGTDMEAPKVLAKGTDYLALKIK 562 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+ IPI E LAR ++ +V I++ IPP Y+ VA+++ + K Sbjct: 563 SIAKENEIPIIENKPLARMMYDKVEIDNDIPPELYQGVAEILAIVMKIK 611 >gi|62317075|ref|YP_222928.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 1 str. 9-941] gi|83269068|ref|YP_418359.1| flagellar biosynthesis protein FlhB [Brucella melitensis biovar Abortus 2308] gi|189022341|ref|YP_001932082.1| flagellar biosynthesis protein FlhB [Brucella abortus S19] gi|237816636|ref|ZP_04595628.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A] gi|254698362|ref|ZP_05160190.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 2 str. 86/8/59] gi|254731807|ref|ZP_05190385.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 4 str. 292] gi|260544314|ref|ZP_05820135.1| type III secretion exporter [Brucella abortus NCTC 8038] gi|260759573|ref|ZP_05871921.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str. 292] gi|260762817|ref|ZP_05875149.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str. 86/8/59] gi|62197268|gb|AAX75567.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 1 str. 9-941] gi|82939342|emb|CAJ12286.1| Type III secretion exporter:Flagellar biosynthetic protein FlhB [Brucella melitensis biovar Abortus 2308] gi|189020915|gb|ACD73636.1| Type III secretion exporter [Brucella abortus S19] gi|237787449|gb|EEP61665.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A] gi|260097585|gb|EEW81459.1| type III secretion exporter [Brucella abortus NCTC 8038] gi|260669891|gb|EEX56831.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str. 292] gi|260673238|gb|EEX60059.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str. 86/8/59] Length = 356 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 123/353 (34%), Positives = 206/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DA ++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDAQDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|17989459|ref|NP_542092.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str. 16M] gi|148558113|ref|YP_001257188.1| flagellar biosynthesis protein FlhB [Brucella ovis ATCC 25840] gi|163844317|ref|YP_001621972.1| flagellar biosynthesis protein FlhB [Brucella suis ATCC 23445] gi|225628598|ref|ZP_03786632.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo] gi|225685983|ref|YP_002733955.1| flagellar biosynthesis protein FlhB [Brucella melitensis ATCC 23457] gi|254699432|ref|ZP_05161260.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 5 str. 513] gi|254706322|ref|ZP_05168150.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis M163/99/10] gi|254711387|ref|ZP_05173198.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis B2/94] gi|256014911|ref|YP_003104920.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|256029983|ref|ZP_05443597.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis M292/94/1] gi|256043043|ref|ZP_05445988.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str. Rev.1] gi|256059636|ref|ZP_05449833.1| flagellar biosynthesis protein FlhB [Brucella neotomae 5K33] gi|256111971|ref|ZP_05452922.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 3 str. Ether] gi|256262893|ref|ZP_05465425.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9] gi|260564276|ref|ZP_05834761.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M] gi|261313768|ref|ZP_05952965.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M163/99/10] gi|261318993|ref|ZP_05958190.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94] gi|261323606|ref|ZP_05962803.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33] gi|261749883|ref|ZP_05993592.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513] gi|265987004|ref|ZP_06099561.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M292/94/1] gi|265989482|ref|ZP_06102039.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str. Rev.1] gi|265993419|ref|ZP_06105976.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str. Ether] gi|17985338|gb|AAL54356.1| flagellar biosynthetic protein flhb [Brucella melitensis bv. 1 str. 16M] gi|148369398|gb|ABQ62270.1| flagellar biosynthetic protein FlhB [Brucella ovis ATCC 25840] gi|163675040|gb|ABY39150.1| flagellar biosynthetic protein FlhB [Brucella suis ATCC 23445] gi|225616444|gb|EEH13492.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo] gi|225642088|gb|ACO02001.1| flagellar biosynthetic protein FlhB [Brucella melitensis ATCC 23457] gi|255997571|gb|ACU49258.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|260151919|gb|EEW87012.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M] gi|261298216|gb|EEY01713.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94] gi|261299586|gb|EEY03083.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33] gi|261302794|gb|EEY06291.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M163/99/10] gi|261739636|gb|EEY27562.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513] gi|262764289|gb|EEZ10321.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str. Ether] gi|263000151|gb|EEZ12841.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str. Rev.1] gi|263092730|gb|EEZ16939.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9] gi|264659201|gb|EEZ29462.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis M292/94/1] gi|326410307|gb|ADZ67371.1| flagellar biosynthesis protein FlhB [Brucella melitensis M28] gi|326553600|gb|ADZ88239.1| flagellar biosynthesis protein FlhB [Brucella melitensis M5-90] Length = 356 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|153953791|ref|YP_001394556.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium kluyveri DSM 555] gi|146346672|gb|EDK33208.1| Fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium kluyveri DSM 555] Length = 606 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 190/348 (54%), Gaps = 2/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + +K DA +G P S+E +L ++LA + +L V + + Sbjct: 261 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVILALGGYVGSQVKTTMITF 320 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L D + + + + + +P + ++ G+ + Q ++ + +KP Sbjct: 321 FNNYLVMSL-DYASVQKITFITLWRLAIIFLPVAVPILVMGVLANFFQTRGLVTSHPLKP 379 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F +++ G KR++S+ +++ +KS I +VG I + +NY ++ S N SI+ Sbjct: 380 DFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLSSLNFESIV 439 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + + + ++D + Q+ L+MSKQE+K+E KQ G+P IK++ Sbjct: 440 KAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDEGDPQIKSK 499 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K R +MM+ +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+L+A +++K Sbjct: 500 IKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQDLVALRIKK 558 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A + ++PI E P LAR ++K+V ++ IP Y+AVA+++ +Y + Sbjct: 559 VAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 606 >gi|254695264|ref|ZP_05157092.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 3 str. Tulya] gi|261215629|ref|ZP_05929910.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str. Tulya] gi|260917236|gb|EEX84097.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str. Tulya] Length = 356 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 208/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ + L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRSEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|170748134|ref|YP_001754394.1| flagellar biosynthesis protein FlhB [Methylobacterium radiotolerans JCM 2831] gi|170654656|gb|ACB23711.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans JCM 2831] Length = 353 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 209/353 (59%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ ++KTEA S KKI DA+ EGN P SREA +F+SIL LI+L+F Sbjct: 1 MSED--RESKTEAASEKKISDAIAEGNTPFSREAPVFASILGLLIFLVFVARDQGLPFVQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++L +E + L+ L+L R ++P L++ + GI + + Q P + + Sbjct: 59 RLALILEQPRNFSVETRHDAMRLVHALALEMGRFLLPVLIILLAAGITASIFQNAPRVVI 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P + R+S G R++S+ + F KS K +G + + L + +++ + + Sbjct: 119 DRIQPKWSRISPVTGWNRLFSLQGFIEFGKSLFKFFAIGGMSYMVLHADRHEIVNVMFVD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +++ + + L D+ W+ +W L+MS+QE+KDE KQ G+P Sbjct: 179 PVGLPEFLLTLSVRLVSAVSVATIALVAGDLVWTRLRWQRDLRMSRQEVKDEFKQLEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K + +S+A+ R+R +MM A RAT+I+ NPTHYA+ALRY Q+ENDAP+++AKG +LIA Sbjct: 239 LVKAKMRSLAQDRLRKQMMAAVPRATMILANPTHYAIALRYDQSENDAPMVLAKGADLIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A +H I + + +L R+++ V IN AIP FY+AVA L+ + +K Sbjct: 299 LRIRELAEKHRIEVVVDKALTRAMYDHVEINQAIPAEFYRAVANLLVYVMTRK 351 >gi|297584054|ref|YP_003699834.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens MLS10] gi|297142511|gb|ADH99268.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens MLS10] Length = 359 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 173/349 (49%), Gaps = 3/349 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK ++ N+G S + + ++ + F + + + + + Sbjct: 12 QEKTEKATPKKKRESRNKGQVAKSTDVNTAFILMFVFLMFFFAGPFMVDQMLTIVRFTME 71 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + +++ + A+ V P +L ++ G+ + +Q + VK Sbjct: 72 EYLLMDV-TPANVQPMFIDYIFQAAVAVAPVMLASVIAGVFANYVQVGVLFAPEAVKFKL 130 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++++ +G KRI+SI LV F+KS +KI+LVG + I + +L Sbjct: 131 EKINPLKGFKRIFSIRALVEFLKSMMKIVLVGGVTGIVIWLYMDDLLKIGLYAVEDAAVL 190 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + + + L +LD + + + ++MSKQ++KDE K++ G+P+IK++ K Sbjct: 191 IGTLIIFMGLAVGFLLIFLAILDYMYQKYDFEKNIRMSKQDVKDEYKKTEGDPLIKSKIK 250 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A ++ITNPTHYA+AL+Y +APV+VAKG + +A K+ IA Sbjct: 251 EKQRQMAMSRMMQEVPKADVVITNPTHYAIALKYDADNMEAPVIVAKGVDYVALKLINIA 310 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY--HKKI 354 + + E LAR+L+ Q I +P +KAVA+++ +Y KKI Sbjct: 311 KNNEVLTAENRPLARALYAQADIGDQVPEDLFKAVAEVLAYVYRIQKKI 359 >gi|256256624|ref|ZP_05462160.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 9 str. C68] gi|260882866|ref|ZP_05894480.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str. C68] gi|297249980|ref|ZP_06933681.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str. B3196] gi|260872394|gb|EEX79463.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str. C68] gi|297173849|gb|EFH33213.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str. B3196] Length = 356 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|254228807|ref|ZP_04922230.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262396474|ref|YP_003288327.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] gi|151938754|gb|EDN57589.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25] gi|262340068|gb|ACY53862.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25] Length = 375 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 173/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + +KTE S +K++ A EG P ++E + LA +Y I+ S Sbjct: 1 MSDQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVALYFYSQL-NSIWESMS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + T+ LE+ +V L +++P + ++ GS L+ + Sbjct: 59 GIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +V P +++ GIKRI+S ++V +KS K+ ++ I+ L + +L + Sbjct: 119 ANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYLDNHLQPLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + V+DI + + +L+M+KQE+K+E K + G P Sbjct: 179 LSQGFSLVMSILFEGLLLMGFALLLFGVVDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A +IITNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + K Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351 >gi|256158147|ref|ZP_05456063.1| flagellar biosynthesis protein FlhB [Brucella ceti M490/95/1] gi|256252902|ref|ZP_05458438.1| flagellar biosynthesis protein FlhB [Brucella ceti B1/94] gi|261219990|ref|ZP_05934271.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94] gi|265996665|ref|ZP_06109222.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1] gi|260918574|gb|EEX85227.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94] gi|262550962|gb|EEZ07123.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1] Length = 356 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 125/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY EN APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNENAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|91223202|ref|ZP_01258468.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01] gi|269967109|ref|ZP_06181176.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B] gi|91192015|gb|EAS78278.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01] gi|269828246|gb|EEZ82513.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B] Length = 375 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 173/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + +KTE S +K++ A EG P ++E + LA +Y I+ S Sbjct: 1 MSDQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVALYFYSQL-NSIWESMS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + T+ LE+ +V L +++P + ++ GS L+ + Sbjct: 59 GIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +V P +++ GIKRI+S ++V +KS K+ ++ I+ L + +L + Sbjct: 119 ANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYLDNHLQPLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + V+DI + + +L+M+KQE+K+E K + G P Sbjct: 179 LSQGFSLVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A +IITNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + K Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351 >gi|294853145|ref|ZP_06793817.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026] gi|294818800|gb|EFG35800.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026] Length = 356 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIADFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|156976193|ref|YP_001447099.1| flagellar biosynthesis pathway, component FlhB [Vibrio harveyi ATCC BAA-1116] gi|156527787|gb|ABU72872.1| hypothetical protein VIBHAR_04964 [Vibrio harveyi ATCC BAA-1116] Length = 375 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE S +K++ A EG P ++E + LA ++ I+ S Sbjct: 1 MSEQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQL-NSIWESMS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T+ LE+ +V L +++P + ++ GS ++ + Sbjct: 59 GVFRYNMTLTKADLENPKQLVEHLGQSLAVIIEMLLPLFTVIIIVAFGSSMVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +V P +++ GIKRI+S ++V +KS VK++++ I+ L + +L + Sbjct: 119 ANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYLDNHLQPLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + VLDI + + +L+M+KQE+K+E K + G P Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEHSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + K Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351 >gi|23499885|ref|NP_699325.1| flagellar biosynthesis protein FlhB [Brucella suis 1330] gi|161620208|ref|YP_001594094.1| flagellar biosynthesis protein FlhB [Brucella canis ATCC 23365] gi|254702550|ref|ZP_05164378.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 3 str. 686] gi|260568543|ref|ZP_05839012.1| type III secretion exporter [Brucella suis bv. 4 str. 40] gi|261753127|ref|ZP_05996836.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686] gi|23463460|gb|AAN33330.1| flagellar biosynthetic protein FlhB [Brucella suis 1330] gi|161337019|gb|ABX63323.1| flagellar biosynthetic protein FlhB [Brucella canis ATCC 23365] gi|260155208|gb|EEW90289.1| type III secretion exporter [Brucella suis bv. 4 str. 40] gi|261742880|gb|EEY30806.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686] Length = 356 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDHMIAPEFYKAVAELIRIINTRR 353 >gi|146296299|ref|YP_001180070.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409875|gb|ABP66879.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 366 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 188/344 (54%), Gaps = 1/344 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KTE + +K ++A G SRE + ++L +++L F +S ++ + S + Sbjct: 16 KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLFVHPLQSYGKYFFGN- 74 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 +EDI+ L + + +LV+P ++ M Q ++ +K SF++ Sbjct: 75 LNYNIEDIADASRLFSAIITITLKLVLPFCIVIMFMTALVEWAQSGFLITSESLKVSFQK 134 Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 ++ EG KRI+SIN++V +KS +KI+++G +S +L+ + SI+ +F Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKILIIGYTGYLSTKTFAGKLLEMYDMSLISIVKFSF 194 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ GNP IK+R + Sbjct: 195 DSTINLILWMSIMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIRER 254 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ IA+K+++ A + Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKEEAKK 314 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + I I E LA+SL+ + IPP Y AVA+++ +Y K Sbjct: 315 YKIEIVENKELAQSLYNMCEVGDFIPPELYHAVAEVLAYVYSLK 358 >gi|289523553|ref|ZP_06440407.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503245|gb|EFD24409.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 367 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 170/347 (48%), Gaps = 2/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + ++ A EG S + +IL ++ LLF ++S V Sbjct: 16 EEKTEPATPRRRRKAREEGQVAKSMDLVSSVAILTGVL-LLFAMGFFLFSTLKQFFVWEL 74 Query: 68 SATQRKLEDISHIVFLLTHLSLSA-SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S + ++ + L+ + P +L + + Q ++ + P Sbjct: 75 SHLSDDVNFRGQWIWRASARGLAVYLKTWFPLAILSALGVVLISFAQVGFLITPKPLVPK 134 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 R++ G+K++ S+ +LV +K +K L+ +++ L ++ T+L + L Sbjct: 135 LNRLNPVSGLKKVLSLRSLVELIKGLLKATLLASVLYFGLKKSLETLLLTMQMPLSGGLG 194 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 T+ + + + + + + + D + ++ +KMS+QEIK+E KQ G+P +K R Sbjct: 195 ILSKTILNLSLKMAIALFAIAIFDYAYQKWEFERSIKMSRQEIKEEFKQLEGDPQLKRRI 254 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R R +MM +A ++ITNPT A+A+ Y + DAPV++AKG ++A K+R+ Sbjct: 255 RQRQRELARRRMMAEVKKADVVITNPTRIAVAILYDKKIMDAPVVIAKGLGVVAGKIREE 314 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +++IP+ + P LA +L+ V I IP YKAVA+++ +Y K Sbjct: 315 AIKYDIPLVQRPPLAWTLYNNVEIGEKIPEELYKAVAEILVFVYRLK 361 >gi|170683079|ref|YP_001742349.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5] gi|170520797|gb|ACB18975.1| lateral flagellar export/assembly protein LfhB [Escherichia coli SMS-3-5] Length = 379 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ +SL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAINDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|288962718|ref|YP_003453012.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288914984|dbj|BAI76468.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 359 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 111/354 (31%), Positives = 193/354 (54%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + KTE P+ K++ +A +G+ P +R+ L S+++A + +L ++++ Sbjct: 1 MAEQDD-EQKTEEPTEKRLREAAEKGDVPRARDVGLLSAMVAAWMIVLMAAPGVASNLSA 59 Query: 61 DLHVLLASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L+ + +++ + ++ L L + ++P L + ++ + S L Q V+ Sbjct: 60 LLLPLIENPDDIRIDGGAIDVIHSLAWLIGGVAVALLPVLGILLVGAVVSALGQGPFVVA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P + +S G KR+ LV F KS VK+ ++ +L D + Sbjct: 120 SDRIRPKWSHLSPAAGWKRMAGRPALVEFAKSLVKLAIISAAAWRALAPYIAWTEDTVGM 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + ++L+ +LL + +D+ W+ +W +L+MS QEIKDE KQ G+ Sbjct: 180 DVAGLPNLLRDVTLRLLLAVLLATVLMAAVDVLWNRLEWRRRLRMSPQEIKDEFKQIEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P K R + I RSR + +MM RAT++ITNPTH+A+AL Y + AP+ +AKG +LI Sbjct: 240 PNAKARLRDIRRSRSKKRMMANVPRATVVITNPTHFAVALEYERGRTAAPICLAKGADLI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R +A EH IPI E P LAR+L Q +++AIP Y+AVA++I + K Sbjct: 300 ALRIRALAQEHGIPIVENPPLARALHAQAEVDAAIPLQHYQAVAEVITYVLKLK 353 >gi|260574396|ref|ZP_05842400.1| type III secretion exporter [Rhodobacter sp. SW2] gi|259023292|gb|EEW26584.1| type III secretion exporter [Rhodobacter sp. SW2] Length = 361 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 166/349 (47%), Gaps = 1/349 (0%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS+ D K PS ++++ A +G P S + S ++ L+ + + + Sbjct: 1 MSDGEDDSAEKEHEPSQRRLDQAREKGQIPRSTDLSTAAAYGGLLLAAVALGEGSLRRIG 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 VLL + + ++ L L ++ V P LL + + QR + + Sbjct: 61 DSAAVLLDQSDRLSALMLTGGTAPLGGLLIAIGWAVAPFFLLPALAVFLAVFAQRAFIFS 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + P R+S E K + N L F KSFVK++++ I+ + L +N +L + Sbjct: 121 PDKLMPKLSRISPIESAKNKFGRNGLFEFAKSFVKLLVISVILGMFLMQNMDDVLGALYL 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P S V + L ++L+ + LD W + + +MS++++ DE K+S G+ Sbjct: 181 EPASATLVLLRLVVQFLFLVLIIATAIGALDYLWQRSEHLRRNRMSRKDMMDEHKESEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P K +++ ++M+ + A +I+ NPTHYA+AL++ + APV VAKG + I Sbjct: 241 PHSKAQRRQRGYDIATNRMLADVATADVIVVNPTHYAVALKWDRAAKRAPVCVAKGVDEI 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A ++R+ A E +P+ +P AR+L V + I P Y+AVA I Sbjct: 301 AARIRERAAEAGVPMHRDPPTARALHASVEVGQEIRPEQYRAVAAAIRF 349 >gi|323191512|gb|EFZ76773.1| flhB HrpN YscU SpaS family protein [Escherichia coli RN587/1] Length = 379 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ ISL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|306846305|ref|ZP_07478866.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1] gi|306273300|gb|EFM55169.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1] Length = 356 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 208/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPIFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PSALPEFLRKNVVRLLVANVLTIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R RH+M+ A AT+I+ NPTH+++ALRY E+ APV++AKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARHRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVIAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAVSHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|293408345|ref|ZP_06652184.1| conserved hypothetical protein [Escherichia coli B354] gi|291471523|gb|EFF14006.1| conserved hypothetical protein [Escherichia coli B354] Length = 379 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALFSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ ISL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ +LD+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|91224467|ref|ZP_01259729.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] gi|91190809|gb|EAS77076.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] Length = 349 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 176/343 (51%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KK+ DA +G S+E + ILA +I L F F+ S S L +L Sbjct: 2 SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVL-FAFADYYMSHISALILLP 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + ++ +V + ++ + L+ P +L+ + I S + Q + + VKP Sbjct: 61 SKLAYQGFQE--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+S+ +++ F+KS +K+ L+ II ++L N ++ + + Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +++++I+ + + D + KLKMSK E+K E K+ G+P IK+++ Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + E R+ +++TNPTH A+ L Y + E PV+ + +AK+M I Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E +P+ ++ LAR+L+ ++ IP +A A+++ + Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWL 341 >gi|292493584|ref|YP_003529023.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4] gi|291582179|gb|ADE16636.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4] Length = 377 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ + +TE P+ K+ ++A +G P SRE S +L+ + LL + + Sbjct: 1 MAES-SAQERTEQPTPKRQQEAREKGQVPRSRELSTTVLLLSSALGLLLMGEFFLQGLAE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ + + + A + + P L L ++ + + L+ + Sbjct: 60 LMRQGLR-LERAQIFEPAAAILQFQQALWEALKTITPFLFLTLIAALAAPLLMGGWSFSF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++++ +G+KR++ + +K+ K +L+G I + ++ Sbjct: 119 QALGFKWEKLDPLKGMKRVFGPQGWMELLKALAKFLLLGGIACVLFWYLGPDLIALGRQG 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 LY + + + + + +D + + +LKM+ QEIK+E K++ G+P Sbjct: 179 LIPALYQLAHLMGWSFLGLSASLVLIAAIDAPFQHWHHTRQLKMTHQEIKEEHKETEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +MM A +A +++TNPTHYA+AL Y Q + AP +VAKG + +A Sbjct: 239 ELKARVRRVQREIAGRRMMAAVPQANVVVTNPTHYAVALDYQQDKGGAPRVVAKGADQVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R +A +N+P+ PSL+R+L+ +N IP Y AVAQ++ ++ + Sbjct: 299 LKIRAVAAANNVPVLSAPSLSRALYYNTELNQEIPAGLYVAVAQVLAYVFQLR 351 >gi|104782805|ref|YP_609303.1| flagellar biosynthesis protein FlhB [Pseudomonas entomophila L48] gi|95111792|emb|CAK16516.1| flagellar biosynthetic protein FlhB [Pseudomonas entomophila L48] Length = 380 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 100/354 (28%), Positives = 181/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ +KTE P+ K+ DA +G S+E + + LA LL F ++ + Sbjct: 1 MAESESGQDKTEEPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGQMAETLMT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T+ + D + L A V P ++L + + + + + Sbjct: 61 LMRANF-TLTREVIVDERSMGAFLLASGKMAIWSVQPVMILLFVISFVAPIALGGFLFSG 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++P F R++ GIKR++S++ L +K+ K +++ + + L + +L + Sbjct: 120 SLLQPKFSRMNPLAGIKRMFSLHALTELLKAIAKFLVILVVALVVLASDRQALLSIANEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA V + + + + D+ + Q + KLKM+KQE++DE K S G P Sbjct: 180 LEQAVIHAVQVVGWSALWMAAGLLLIAAADVPFQLWQAHKKLKMTKQEVRDEYKDSEGKP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299 +K R + + R + +MM A A +IITNPTHYA+AL+Y + AP+L+AKG + + Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPEADVIITNPTHYAVALQYDPEKGGAAPLLLAKGTDFL 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A KMR+I EH + I E P+LAR+++ + IP Y AVAQ++ ++ + Sbjct: 300 ALKMREIGVEHKVQILESPALARAIYYSTELEEEIPAGLYLAVAQVLAYVFQIR 353 >gi|294500921|ref|YP_003564621.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551] gi|294350858|gb|ADE71187.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551] Length = 360 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 178/346 (51%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D+ +G S++ + +L +Y LF + + L Sbjct: 13 GEKTEKATPKKKQDSRKKGQVAKSQDVTTALILLMVFLYFLFGAKQFLQQMMKLLREAFQ 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + ++ + + HL S + P +L + +G+ +Q + + ++P Sbjct: 73 TYMLEEV-TAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQPKL 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 ++++ G KRI+++ LV +KS +KI+ +G + L + +L+ + L Sbjct: 132 EKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFILWIHIEDVLNLSQKSIGDSLVV 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V ++ + L + L++LD + + ++MSKQ+IKDE K G+P+IK++ K Sbjct: 192 LSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLIKSKIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K++ IA Sbjct: 252 QKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQKIKGIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H I + E LAR+LF Q + A+P F+KAVA+++ +Y + Sbjct: 312 KSHEIIMVENRRLARALFDQTKVGDAVPEEFFKAVAEILAYVYRIQ 357 >gi|224370771|ref|YP_002604935.1| FlhB2 [Desulfobacterium autotrophicum HRM2] gi|223693488|gb|ACN16771.1| FlhB2 [Desulfobacterium autotrophicum HRM2] Length = 357 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 179/354 (50%), Gaps = 2/354 (0%) Query: 1 MSENDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E+ KTE SSKK+E A EG S E +LA ++ L F + Sbjct: 1 MAEDPGGGGEKTEGASSKKLEKAREEGQVAKSTEVPSVVVLLAGVLALNAFAFFIYQRLI 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L S T L + +V LL + ++ P LL + + S + Q VL+ Sbjct: 61 LVLQDGL-SFTGIPLSNDVAVVHLLFVATQRLFIILGPLLLAVFVAALVSNIFQVGFVLS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 V P F R+ +G + +S L+ F+KS +KI ++ + + + ++ Sbjct: 120 WKAVAPKFSRIDPIKGFAQKFSSRALMEFLKSILKIAIIFGVTYMVVKSEVENIIRLYDH 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +IL + ++ I ++L +A L +D + ++ KM+KQE+KDE KQ+ G+ Sbjct: 180 GVAAILLYVLKVSLEIFIKVILVMAVLAAIDFAFQRWKFMEDQKMTKQEVKDEHKQAEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R + + + R +MM A +++TNPT A+A+RY +AP +VAKG + Sbjct: 240 PQVKARIRQLQATAARKRMMSDVPEADVVVTNPTRLAIAIRYDGMTMNAPTIVAKGAGAV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +R+IA E N+P+ E +LAR+L+K V + +P ++AVA+L+ ++Y K Sbjct: 300 AANIRRIAEESNVPLVENKALARNLYKIVEVGQEVPTEEFQAVAELLAQVYKLK 353 >gi|294665988|ref|ZP_06731251.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604236|gb|EFF47624.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 357 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFSDHMRALMTIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 62 DFP--ENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K ++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 120 FDSLNPATGVKNLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++ Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341 >gi|306813328|ref|ZP_07447521.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] gi|305854091|gb|EFM54530.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101] Length = 379 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPQVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ +SL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|28901400|ref|NP_801055.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD 2210633] gi|153835995|ref|ZP_01988662.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|260362954|ref|ZP_05775823.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|260880241|ref|ZP_05892596.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|260895358|ref|ZP_05903854.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|260901183|ref|ZP_05909578.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|28809947|dbj|BAC62888.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750749|gb|EDM61494.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|308085557|gb|EFO35252.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus Peru-466] gi|308091839|gb|EFO41534.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AN-5034] gi|308109328|gb|EFO46868.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ4037] gi|308112104|gb|EFO49644.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030] gi|328469334|gb|EGF40280.1| flagellar biosynthetic protein [Vibrio parahaemolyticus 10329] Length = 375 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + +KTE S +K++ A EG P ++E + +A +Y I+ Sbjct: 1 MSDQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFMAVALYFYSQI-NSIWESMF 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S T+ LE+ +V + +++P + ++ GS ++ + Sbjct: 59 GIFRYNMSLTKADLENPQQMVEQVGQSLGMIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ P +++ GIKRI+S +LV +KS +K+ ++ I+ L + +L + Sbjct: 119 ANMLPKLSKLNPLSGIKRIFSTRSLVELVKSTIKVTVIFGILYGYLDNHLQPLLGIQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L+++ + V+DI + + +L+M+KQE+K+E K + G P Sbjct: 179 LNQGFSMVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTHYA+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y AVA ++ + K Sbjct: 299 MHIQRIARENQVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351 >gi|327254528|gb|EGE66144.1| flhB HrpN YscU SpaS family protein [Escherichia coli STEC_7v] Length = 379 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K K ++V ++ ISL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|78355426|ref|YP_386875.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217831|gb|ABB37180.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 357 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M + D +TE + K+ A EGN P S+E +A I L + + Sbjct: 1 MPQQDPS--RTEQATPKRRRKARGEGNVPKSQEVPKTFVTMAGTIALYVYMDHIASEMMG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +A + + LL +S + +++P +L + +Q + Sbjct: 59 LYEHFFRNAVMFE-ATPQAVYDLLLWISGKLALMLLPIMLFLALVAYVVIRLQVGKLWAP 117 Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 KP F R +L +G+KR++ S L+ KS + ++G I + L A Sbjct: 118 KVFKPKFARFNLIKGLKRLFISPQTLIRLGKSILMAAVIGIAPYIVIRNEMHHFLPLFYA 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P +I + K++ +L + + + D+ ++ + LKM+K E+KDE KQ+ G+ Sbjct: 178 TPTAIGVYMLEMGMKMVKYAMLPMLVIAIADLWYTRWDYEENLKMTKDEVKDERKQAEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K +Q+ + +M+E +A +++TNPTHYA+ALRY E APV++AKG + + Sbjct: 238 PAVKAQQRQKMMEVMAQRMLENVPKADVVVTNPTHYAVALRYDAVEAPAPVVLAKGVDHL 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A++++++A EH +PI E LAR+L++QV + IP Y+AVA L+ + K Sbjct: 298 AERIKEVAREHRVPIRENVPLARALYRQVEVGDMIPEELYQAVASLLASLMKFK 351 >gi|156933534|ref|YP_001437450.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894] gi|156531788|gb|ABU76614.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894] Length = 348 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 164/316 (51%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97 +L + +++ + + + + D +V ++ L A ++P Sbjct: 1 MLMLLVGVAVIWVGGSLLARQLAAMLSHGLHFDHSIINDPKLVVGQISFLIKQALMALVP 60 Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157 ++ ++ + + ++ + N V ++++ GIKRI+S +L +K+ +K +L Sbjct: 61 LIMGVVIVALFAPMLLGGLLFNPKAVAFKPEKLNPLPGIKRIFSSQSLAELLKAILKSVL 120 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 VG + + L N+ ++ IS +P + + +A V I+I++ + + D+ W Sbjct: 121 VGIVTGVFLWYNWPDIMRLISESPIAAMRNALNLVALCCILIVMGLVPMVGFDVFWQIVS 180 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277 KL+MS+Q+I+DE K G+P +K R + R R +MM +A +I+ NPTHY++ Sbjct: 181 HTKKLRMSRQDIRDEFKNQEGDPHVKGRIRQQQREAARRRMMADIPKADVIVNNPTHYSV 240 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL+Y + + AP +VAKG L+A ++R+I EH IP+ E P LAR+L++ I IP Sbjct: 241 ALQYDENKMSAPKVVAKGAGLVALRIREIGNEHRIPMLEAPPLARALYRHAEIGQQIPGQ 300 Query: 338 FYKAVAQLIYKIYHKK 353 Y AVA+++ ++ K Sbjct: 301 LYAAVAEVLAWVWQLK 316 >gi|325288792|ref|YP_004264973.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus DSM 8271] gi|324964193|gb|ADY54972.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus DSM 8271] Length = 355 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 176/348 (50%), Gaps = 3/348 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 DA K + K+ ++A +G S+E + +LA + L F+ + + Sbjct: 2 DAIAEKRFPATPKRKQEARKKGQVLKSQELTSSIMLLAMIGVLRFWLPSVLERFADLMKY 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + + T+ ++ L+ +++ A++++ P LL + + IQ + + + Sbjct: 62 VYSLPTEWSNISVAS---LMLNMTWQAAQILAPVLLTTVAVAVAVNYIQVGSLFSTEAIM 118 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P R+SL EG KR++ + + KS +K+I +G + + ++ N Sbjct: 119 PKLSRLSLIEGAKRMFGVRAWIQLAKSLLKVIAIGYFLYAVIRDHLEMFPALQQINALQA 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + ++ I +++LD + + ++ L+MS +EIK+E KQ+ G+P +KN Sbjct: 179 TMFLGEILFELAWKIATAFLLISILDFLYQWWEYEKNLRMSHEEIKEEYKQNEGDPQLKN 238 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 K R+ +MME +A ++ITNPTHYA+AL+Y + DAP +VAKGQ+ +A +++ Sbjct: 239 EMKKRQRAVAMRRMMEDLKKADVVITNPTHYAVALKYDPQKFDAPYVVAKGQDQVALRIK 298 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + A E+ I + E LAR+L+ QV I A+P YKAVA+++ + Sbjct: 299 ETARENRIIMMENKPLARTLYTQVEIGQAVPAELYKAVAEVLAFVMKM 346 >gi|121601720|ref|YP_989412.1| flagellar biosynthesis protein FlhB [Bartonella bacilliformis KC583] gi|120613897|gb|ABM44498.1| flagellar biosynthetic protein FlhB [Bartonella bacilliformis KC583] Length = 356 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 116/355 (32%), Positives = 199/355 (56%), Gaps = 1/355 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS E +++TE P+ KI A +GN P SRE + +S+++ + +F P + +++ Sbjct: 1 MSDEKPDKESQTEEPTEHKIHKAEEKGNLPFSRELPILASLMSFSLITIFVAFPAMSNLS 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L + + L+ + + + L++ + I + IQ P + Sbjct: 61 RFLTEWLERPESWHINTAEDVKHLIYLVGGNLGLALAALLIIIPLISIAASAIQNAPRIV 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P + R+S G RI+ + F+KS VK+I V I+ I +N ++ + Sbjct: 121 TERISPKWSRISPANGFGRIFGKAGFIEFLKSLVKLIGVSIIVYIMFFKNNTIFINALLT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + + + ++ +A + D+ WS W +L+M+KQE+KDE K GN Sbjct: 181 DAPALPEYIRQKLVDLSLSFIVAVAIIAGFDLAWSRFYWRQQLRMTKQEVKDEYKNLEGN 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K+R +S+AR RIR KM+ AT+I+TNPTH+++ALRY + APV++AKGQ+++ Sbjct: 241 PMVKSRMRSLARDRIRRKMIANVPTATLIVTNPTHFSVALRYKPPLDHAPVVIAKGQDIL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A +R+IA +H+IPI E+ LAR+L+KQV ++ IPP FY+ VA LI I +KI Sbjct: 301 ALHIREIATKHDIPIIEDQPLARALYKQVEVDQTIPPEFYEGVAALIRFINSQKI 355 >gi|300936100|ref|ZP_07151041.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] gi|300458749|gb|EFK22242.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1] Length = 379 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K K ++V ++ ISL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|159024053|gb|ABW87281.1| HrcU [Xanthomonas fuscans subsp. fuscans] Length = 357 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFADHMRALMTIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 62 DFP--ENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++ Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341 >gi|188494712|ref|ZP_03001982.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] gi|188489911|gb|EDU65014.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638] Length = 379 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ ISL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ +LD+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|315180495|gb|ADT87409.1| flagellar biosynthetic protein [Vibrio furnissii NCTC 11218] Length = 372 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +KTE SS+K++ A +G S+E S ++ C+ Y + + + L + Sbjct: 2 SSGDKTEQASSQKLDKARKQGQIARSKEFSSAIMLMVCIGYF-YANADSLSGHFMQLFEV 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 T D HI+ L+T ++ P ++ + + + NL+ + P Sbjct: 61 SFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFHFNLSLLAP 120 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F +++ GIKRI+S LV F+K+ KI L+ ++ ++ N+ + + A+ + + Sbjct: 121 KFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSLVRASFQTTI 180 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + V ++L M++L V+DI + + +++KM+KQE+K E K+ G P IK+R Sbjct: 181 HFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQEGRPEIKSR 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + I R + A +++ NPTH+A+AL+Y T+ +AP +VAKG+N +A +R Sbjct: 241 IRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGKNEVAFYIRT 300 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +H + + P + RS++ +N IP + AVAQ++ + K Sbjct: 301 LAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQILKYVQQLK 348 >gi|170021382|ref|YP_001726336.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739] gi|169756310|gb|ACA79009.1| type III secretion exporter [Escherichia coli ATCC 8739] Length = 379 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPQVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ ISL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ +LD+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|331645394|ref|ZP_08346498.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] gi|331045556|gb|EGI17682.1| flagellar biosynthetic protein FlhB [Escherichia coli M605] Length = 379 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q+ + + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQQ-INNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLS 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ ISL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ +LD+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|218703503|ref|YP_002411022.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026] gi|293403334|ref|ZP_06647425.1| predicted protein [Escherichia coli FVEC1412] gi|298378945|ref|ZP_06988826.1| type III secretion protein SctU [Escherichia coli FVEC1302] gi|300898063|ref|ZP_07116432.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] gi|218430600|emb|CAR11466.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia coli UMN026] gi|291429187|gb|EFF02207.1| predicted protein [Escherichia coli FVEC1412] gi|298280058|gb|EFI21562.1| type III secretion protein SctU [Escherichia coli FVEC1302] gi|300358241|gb|EFJ74111.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1] Length = 379 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPDAIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI+R++S +L K VK +V ++ +SL N+ L + Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ +LD+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|289663762|ref|ZP_06485343.1| type III secretion system protein HrcU [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668184|ref|ZP_06489259.1| type III secretion system protein HrcU [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 357 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++DA +G+ PIS + + + +L ++ + S + + + + + + Sbjct: 2 SDEKTEKPTEKKLQDARRDGDIPISPDVTAAAVLLGAMLVMKLAGSYFVEHMRALMQIGM 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + + L + + L++P L+ ++ G+ +Q +L V P Sbjct: 62 D--FTENTRDATAMNRALGRIGIEGLLLMLPFLVACLLGGLIGVFLQTGMNASLKPVTPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ + +N +K VK IL+G ++ + + ++ I Sbjct: 120 FDSLNPVNGVKKLFSLRSFINLLKLVVKAILIGVVLWLGIRALMPMIIGLAYEPTPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E K+S G+P +K ++ Sbjct: 180 IAWRTLGTLCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ I E S+A +++ NPTHYA+AL Y P +VAKG + A ++R Sbjct: 240 KEFAKELIFGDPRERVSKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ V + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-VVELGDAVPESLFETVAVVLRWV 341 >gi|56475796|ref|YP_157385.1| flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1] gi|56311839|emb|CAI06484.1| Flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1] Length = 388 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 163/323 (50%), Gaps = 2/323 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE S +++E A EG P SRE S F ++ L + Sbjct: 1 MAE-DSDLEKTEQASPRRLEQAREEGQVPQSRELSTFLVLITGASGLWLMGGWIGERMLG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + D ++ L A ++P + M+ +G+ ++ V + Sbjct: 60 MLRHGFR-FERALAFDPQLMLQDFGDLFTQALLTMLPLFGVLMVAAVGAPILLGGFVFSP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + R+ +GI R++ ++ LV +KS +K +VG I ++ + S Sbjct: 119 KALGLELDRMDPLKGIGRMFLLHGLVEMLKSLLKAAVVGGIGVFAMWRERDHIFALTSEA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V ++I++ +A L ++D+ + Q++ +L+M+K+E+K E K+ G+P Sbjct: 179 VERAVPDFLQAVLFSALLIIMGLALLALIDVPFQLWQYHKRLRMTKEEVKREGKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S+ R R +MM +A +++TNPTH+++AL+Y + APV+VAKG+ IA Sbjct: 239 HVKGRIRSMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAQKMGAPVVVAKGRGEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARS 323 K+R++A EH +P+ E P LAR+ Sbjct: 299 LKIRELAKEHKVPLLEAPPLARA 321 >gi|220903612|ref|YP_002478924.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867911|gb|ACL48246.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 359 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 100/354 (28%), Positives = 182/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M +KTE + K+I EGN P S+E S+L + L + P ++ Sbjct: 1 MFGKQKDPSKTEEATPKRIRKQRGEGNVPKSQELGKAVSLLGGMSILYAWIGPMSEAIKK 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+ A + + ++ L L + ++++P LL + + + +Q + Sbjct: 61 LFRHFLSHAWEFD-PNPENVYSLTLELMIEVCKIIMPILLTLAVLSMLAQRLQVGKLWTT 119 Query: 121 NHVKPSFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 KP +R ++ +GIK++ +S ++ +KS + +++ TI + + Y L A Sbjct: 120 KVFKPKLQRFNIFKGIKQMLFSPQTILRTIKSLLFSLILSTIPAWIIYKEYQNFLPMYYA 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + K++ L+ I + D+ S + + +KM+K E+KDE KQ+ G+ Sbjct: 180 TTEGVAVYMLQMAFKLVSYALIPILIIAAFDVWQSRYSYKENMKMTKDEVKDEHKQADGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K++Q+ + +M++ +A ++ITNPTH A+ALRY TE APV++AKG + + Sbjct: 240 PVVKSQQRKKMMEAMSKRMLQDVPKADVVITNPTHIAVALRYNATEAPAPVVLAKGADHL 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K+++ A EHN+PI E LAR+L+K + IP YKAVA ++ I+ K Sbjct: 300 AEKIKQAAREHNVPIRENVPLARALYKSAEVGDMIPEELYKAVATVLAAIWKLK 353 >gi|254711986|ref|ZP_05173797.1| flagellar biosynthesis protein FlhB [Brucella ceti M644/93/1] gi|254715056|ref|ZP_05176867.1| flagellar biosynthesis protein FlhB [Brucella ceti M13/05/1] gi|261216763|ref|ZP_05931044.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1] gi|261319630|ref|ZP_05958827.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1] gi|260921852|gb|EEX88420.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1] gi|261292320|gb|EEX95816.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1] Length = 356 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 207/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVGFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|260768792|ref|ZP_05877726.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|260616822|gb|EEX42007.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] Length = 372 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +KTE SS+K++ A +G S+E S ++ C+ Y + + + L + Sbjct: 2 SSGDKTEQASSQKLDKARKQGQIARSKEFSSAIMLMVCIGYF-YANADSLSGHLMQLFEV 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 T D HI+ L+T ++ P ++ + + + NL+ + P Sbjct: 61 SFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFHFNLSLLAP 120 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F +++ GIKRI+S LV F+K+ KI L+ ++ ++ N+ + + A+ + + Sbjct: 121 KFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSLVRASFQTTI 180 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + V ++L M++L V+DI + + +++KM+KQE+K E K+ G P IK+R Sbjct: 181 HFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQEGRPEIKSR 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + I R + A +++ NPTH+A+AL+Y T+ +AP +VAKG+N +A +R Sbjct: 241 IRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGKNEVAFYIRT 300 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A +H + + P + RS++ +N IP + AVAQ++ + K Sbjct: 301 LAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQILKYVQQLK 348 >gi|196247620|ref|ZP_03146322.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16] gi|196212404|gb|EDY07161.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16] Length = 360 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 174/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S +A + +LA + L + + L+ Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDAVAAAVLLATFLALFLAGAYERDGLLRLFTRALS 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L I + L A+ L+ P ++ + +Q + + +K + Sbjct: 73 DYASVPL-TIDSLHLLFLDWLRHAAFLLAPFFAAAVLAAGLANFLQIGALFTVEPLKMDW 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ +G+KR +S+ +V +KS +K ++GT++ L +L +S P ++L Sbjct: 132 NRLNPVKGMKRFFSLRAIVELLKSVLKTGIIGTVVFTLLFFERNELLALVSKPPGAMLAV 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 IGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A ++++IA Sbjct: 252 QKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALRIKEIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|160902843|ref|YP_001568424.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95] gi|160360487|gb|ABX32101.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95] Length = 363 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 186/347 (53%), Gaps = 3/347 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE P+ +++E A EGN P S E ++ S L+ ++L F P + + + Sbjct: 18 ADPDKTEDPTPRRLEKAREEGNIPQSNEFNMAVSFLSISLFLWIIFEPLLNDIFKVFYDY 77 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ + ++ ++ +I ++ ++ +IQ + +K Sbjct: 78 LSLDLDYS---PTDLLGYEITAHMNLYIKLILFFVVAVVVSTLLGMIQTKFLFTFKSLKL 134 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ +G KR++S+ ++V +K+ +K+ ++G + + N+F +L Sbjct: 135 DLSKINPIKGFKRLFSLRSVVELIKALLKLTILGLLTYNIIKSNWFKILSLAGEETGFSF 194 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F V +L + + + L++ D + +++ +LKMSK E+K E K+ GNP IK R Sbjct: 195 NVIFDLVINILFQLGIVLLLLSLFDFWYQRYEYKKELKMSKYEVKQERKEIEGNPEIKQR 254 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ + R+ R +MM+ A ++ITNPTHYA+A+ Y E AP++VAKG++ +A K+R+ Sbjct: 255 QRELMRNLARSRMMQKVPEADVVITNPTHYAVAIEYKAEEMQAPIVVAKGKDEVAFKIRE 314 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 IA++H IPI E P+LAR ++++V +N IP Y VA+++ +Y Sbjct: 315 IAFKHGIPILERPALAREIYEKVELNEEIPEDLYTLVAEVLAYVYKL 361 >gi|108758626|ref|YP_630670.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] gi|108462506|gb|ABF87691.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] Length = 359 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 170/351 (48%), Gaps = 4/351 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D KTE PS KK++D+ +G S++ S +L L + + +TS Sbjct: 2 SDESGEKTEEPSQKKLDDSRKKGQVWKSKDLSGVGVLLVGLAAVKGSWDMLETELTSLFL 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYLIQRIPVLNLNH 122 T D+S L L L A LV +P L + G +Q + ++ Sbjct: 62 FSFDHLTNPV--DLSVATGQLLFLGLRAVVLVSLPVLAGGAIVGGLMEYLQVGTLFTMDP 119 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + P ++++ +G+K +++ +V +K+ +KI + ++ + ++ + + + + Sbjct: 120 LIPKMEKLNPIQGMKNLFNKKAIVELLKNLIKISVTAYVVYGVVRDSMPMVAETLRQDTR 179 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I+ V +V + L V D+ W + + M+K+E+K E KQS G+P Sbjct: 180 GIMAIMGELVTRVATRVALLFVLFGVFDVWWQRKSFMKDMMMTKEEVKKEYKQSEGDPHH 239 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++K + + + MEA A +I+TNP H A+AL+Y + ++ AP ++A+G + A++ Sbjct: 240 KAKRKEMHQEIMEGAQMEAVREADVIVTNPDHVAVALKYDREKDGAPRVLARGIDFKAER 299 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IA E ++P LA +L + V + +P Y AVA+++ +Y K Sbjct: 300 IKAIAREQDVPTLRNVPLAHALLR-VEVGHEVPEELYDAVAEVLNFVYGLK 349 >gi|256020206|ref|ZP_05434071.1| flagellar biosynthesis protein FlhB [Shigella sp. D9] gi|260866391|ref|YP_003232793.1| putative lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] gi|300817293|ref|ZP_07097511.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|307315219|ref|ZP_07594798.1| type III secretion exporter [Escherichia coli W] gi|331666524|ref|ZP_08367398.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|332281368|ref|ZP_08393781.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|257762747|dbj|BAI34242.1| predicted lateral flagellar export pore protein [Escherichia coli O111:H- str. 11128] gi|300530269|gb|EFK51331.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1] gi|306905400|gb|EFN35937.1| type III secretion exporter [Escherichia coli W] gi|315059466|gb|ADT73793.1| Lateral flagellar export/assembly protein [Escherichia coli W] gi|323178517|gb|EFZ64095.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1180] gi|323379976|gb|ADX52244.1| type III secretion exporter [Escherichia coli KO11] gi|331065748|gb|EGI37632.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271] gi|332103720|gb|EGJ07066.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 379 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ +SL N+ + L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|220929449|ref|YP_002506358.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum H10] gi|219999777|gb|ACL76378.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum H10] Length = 381 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 179/349 (51%), Gaps = 1/349 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE + KK DA +G SRE + ++ ++ + F +T + Sbjct: 27 GAGDKTEKATPKKKSDARKKGQVFQSREMTASLILIITIVAMRIFGGTIYSQLTQYIKKT 86 Query: 66 LAS-ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 T + D + + L + ++ V+P LL+ ++ + Q + + +K Sbjct: 87 FNEYLTVKDAIDFNILANLFIDALMVLAKTVLPLLLMALLAALIVNYAQVGILFTMETLK 146 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 R++ G KRI+S+ ++V +KS +KII+V + L +L + + ++ Sbjct: 147 IKGDRINPLSGFKRIFSLRSVVELLKSIIKIIIVSWVAYSYLKSKTEQVLSLMDTDLMNV 206 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L V + I + + L D + + + LKM+KQE+K+E KQ G+P IK+ Sbjct: 207 LIFICDASFTVALRICMAMVILGFADYLYQRYDYEKNLKMTKQEVKEEYKQMEGSPEIKS 266 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + K R +MM+ +A ++ITNPTH+A+AL+Y ++ AP +VAKGQ+ IA +++ Sbjct: 267 KIKQKQRQMSMKRMMQDIPKADVVITNPTHFAVALKYDTEKSSAPFVVAKGQDYIALRIK 326 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA ++ + I E LAR+L+ V I AIPP Y+AVA+++ +Y+ K Sbjct: 327 QIASDNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375 >gi|310820310|ref|YP_003952668.1| type III secretion protein hrpy/hrcu family protein [Stigmatella aurantiaca DW4/3-1] gi|309393382|gb|ADO70841.1| Type III secretion protein HrpY/HrcU family protein [Stigmatella aurantiaca DW4/3-1] Length = 353 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 162/347 (46%), Gaps = 2/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE PS KK++DA +G S++ + L L + + + + L + Sbjct: 2 SDEKTEEPSQKKLDDARKKGQVWKSKDLTGVFVFLVGLGAVKGMWDTIVEEL-KTLFLFT 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + E ++ + L P + + +Q + ++ + P Sbjct: 61 FQYISQPEELSRATSNAMSMAVHTVLFLTAPIVAGGAVIAGLVEFLQVGALFTMDPLIPK 120 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++++ +GIK I+S +V +K+ VKI + ++ + + ++ + + +L Sbjct: 121 LEKLNPIQGIKNIFSKKTVVEMIKNLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLA 180 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V +V + L ++ DI W + ++ MSK ++K E K+S G+P K + Sbjct: 181 VMGEMVYRVCTRVALVFLLFSIFDIWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHR 240 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K + + + MEA A +I+TNP H A+AL+Y + ++ AP ++AKG + A++++ I Sbjct: 241 KQMHQEIMEGAQMEAVKDADVIVTNPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAI 300 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E ++P LA +L + V + IP Y AVA+++ +Y K Sbjct: 301 ARESDVPTLRNVPLAHALLR-VDVGQDIPEELYDAVAEVLNFVYGLK 346 >gi|260853445|ref|YP_003227336.1| putative lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|257752094|dbj|BAI23596.1| predicted lateral flagellar export pore protein [Escherichia coli O26:H11 str. 11368] gi|323158016|gb|EFZ44117.1| flhB HrpN YscU SpaS family protein [Escherichia coli EPECa14] Length = 379 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI+R++S +L K VK ++V ++ +SL N+ + L + Sbjct: 117 KKILPDFSKISPLKGIERLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|197104398|ref|YP_002129775.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum HLK1] gi|196477818|gb|ACG77346.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum HLK1] Length = 359 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 107/352 (30%), Positives = 198/352 (56%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE + +K+E A ++G+ + + S F+++ A L + S Sbjct: 1 MSETEQS-SKTEEATPRKLEKARSQGDVAKTMDLSSFATLAAGAAALAVTGGWLARKMAS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + L V + H+ ++A+ + L + G+ ++L+Q + + Sbjct: 60 ELLPFVERPHAIDLHGAGG-VDIARHVIMAAAPALAIVLGATAICGVAAHLMQTGLIFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP K++S G+K+I+ ++NLVNF+KS VK+I+ G + L + + + + Sbjct: 119 EKMKPDLKKLSPIAGLKKIFGLDNLVNFLKSLVKVIVTGALGWWLLQPYIPQLAELAALD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +++ A +++++ + ++ D W ++ ++KM+++E+KD+ KQ G+P Sbjct: 179 PLAMMPFAVDILKRLVFAVAALTLSIAGADWIWQKRRYLHRMKMTREEVKDDFKQVEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K RQK I +R R +MM A AT+++ NPTHYA+AL+Y +E AP+ VAKG + +A Sbjct: 239 HVKARQKQIRFTRARQRMMAAVPDATVVVMNPTHYAVALKYDASETPAPMCVAKGLDSLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R +A E +P+ E+P LAR+L+ V I+ IPP Y+AVA++I I ++ Sbjct: 299 LKIRAVAEEAGVPVIEDPPLARALYAAVEIDDMIPPAHYEAVAKIIGFILNR 350 >gi|115523575|ref|YP_780486.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisA53] gi|115517522|gb|ABJ05506.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris BisA53] Length = 356 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 187/353 (52%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ KTE P+ K+++DA G+ S+E + + I + L F + + Sbjct: 1 MSDDDSS-EKTEDPTQKRLDDAHQRGDVAKSQEVNTWFVIAGGTLVLSSFSGSIGAGLQN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL ++ + + + T + + + L +P LL+ M+ + ++Q V + Sbjct: 60 PLRNLLENSWMIRTDGPGLLALAQTLIYVVIAALGVP-LLMLMIAAVAGNVLQHRLVFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F ++S +G KR++ F+K KII +G ++ L + + + Sbjct: 119 EGLKPKFSKLSPMQGAKRLFGKQAWATFLKGLFKIIALGAVMVAVLWPERHRLEAMVRFD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ ++L ++ +A + V D + Y WY K KMS QEIK+E KQS G+P Sbjct: 179 VAALMGTTITLTLQLLGAVVAMLAAVAVADFFFQYRTWYEKQKMSLQEIKEEHKQSEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R+R +MM A +A+++ITNPTHY++AL Y APV VAKG + +A Sbjct: 239 HIKGKLRQLRMQRMRQRMMAAVPKASVVITNPTHYSVALSYESG-MQAPVCVAKGADAVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A +++PI E LAR+L+ V I+ +P Y AVA++I + K Sbjct: 298 LKIREVAKANDVPIVENVPLARALYATVKIDEEVPVEHYHAVAEVIGYVMRLK 350 >gi|323181524|gb|EFZ66944.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1357] Length = 379 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI+R++S +L K VK ++V ++ +SL N+ L + Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|254469948|ref|ZP_05083353.1| translocation protein in type III secretion [Pseudovibrio sp. JE062] gi|211961783|gb|EEA96978.1| translocation protein in type III secretion [Pseudovibrio sp. JE062] Length = 377 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + KTE P+ K+ ++ +G S E + S+ + + YL F + + Sbjct: 1 MS-GQSSGEKTELPTPKRERESREKGQVAKSTEVTTTISLFSVIAYLWFSWDLNFSKLVG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L AT+R S + + + +V+P + + + GI +Q + + Sbjct: 60 LMDDLADLATRRDFS--SSAGEGVFGVFSTFMDIVLPLIGVAIAAGIFGNFVQFGFLWAV 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P ++S EG KRI+S+ +V +KS +KI+L+ T++ ++ ++ +S Sbjct: 118 DSIMPKLSKISPAEGFKRIFSLKQVVQVLKSILKIVLLSTMLYFTVKYAIGAYINSLSCG 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I + ++ +L + L + +LD + H LKM+K+E+K E K+S G+P Sbjct: 178 IPCITNISGAIMKLILGISFLAFVGVAILDFMFQKHTHIKSLKMTKEEVKREHKESEGSP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK ++K I++ + +E T +A+ ++ NPTHYA+A+ Y E P++VAKG +L A Sbjct: 238 EIKGQRKRISQEILMSDNLENTRKASAVVVNPTHYAVAISYRPDEVAVPLVVAKGLDLTA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 KMR A +PIF LAR L +V I IP + AVA+++ I K Sbjct: 298 LKMRAEAEAAGVPIFANVKLARMLHAEVQIEELIPQDMFAAVAEILVWIDQNK 350 >gi|301646788|ref|ZP_07246642.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|307136835|ref|ZP_07496191.1| flagellar biosynthesis protein FlhB [Escherichia coli H736] gi|331640691|ref|ZP_08341838.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] gi|301075023|gb|EFK89829.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1] gi|315616850|gb|EFU97467.1| flhB HrpN YscU SpaS family protein [Escherichia coli 3431] gi|331040065|gb|EGI12273.1| flagellar biosynthetic protein FlhB [Escherichia coli H736] Length = 379 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI R++S +L K VK ++V ++ +SL N+ L + Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ ++D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y + AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E+ + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|138894758|ref|YP_001125211.1| flagellar biosynthesis protein FlhB [Geobacillus thermodenitrificans NG80-2] gi|134266271|gb|ABO66466.1| Flagellar biosynthetic protein [Geobacillus thermodenitrificans NG80-2] Length = 360 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 174/346 (50%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S +A + +LA + L + + L+ Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDAVAAAVLLATFLALFLAGAYERDGLLRLFTRALS 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L I + L A+ L+ P ++ + +Q + + +K + Sbjct: 73 DYASVPL-TIDSLHLLFLDWLRHAAFLLAPFFAAAVLAAGLANFLQIGALFTVEPLKMDW 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ +G+KR +S+ +V +KS +K ++GT++ L +L +S P ++L Sbjct: 132 NRLNPVKGMKRFFSLRAIVELLKSMLKTGIIGTVVFTLLFFERNELLALVSKPPGAMLAV 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 IGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A ++++IA Sbjct: 252 QKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALRIKEIA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|297530588|ref|YP_003671863.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3] gi|297253840|gb|ADI27286.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3] Length = 360 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S + S +LA + L + + L+ Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L + + L AS L+ P ++ + +Q + + +K + Sbjct: 73 DYASASL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDW 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P L Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K++++A Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|21241179|ref|NP_640761.1| type III secretion system protein HrcU [Xanthomonas axonopodis pv. citri str. 306] gi|21106486|gb|AAM35297.1| HrcU protein [Xanthomonas axonopodis pv. citri str. 306] Length = 357 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 62 DFP--ENTRDATAINRALGHIGIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++ Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341 >gi|254720636|ref|ZP_05182447.1| flagellar biosynthesis protein FlhB [Brucella sp. 83/13] gi|265985680|ref|ZP_06098415.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13] gi|306837360|ref|ZP_07470239.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653] gi|264664272|gb|EEZ34533.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13] gi|306407552|gb|EFM63752.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653] Length = 356 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 123/353 (34%), Positives = 205/353 (58%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFAAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + I + Q P Sbjct: 61 FLRELIDHPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLASIAASAFQNAPRFVS 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+S +G +RI+ V F+KS K++ I+ + + D ++ + Sbjct: 121 ERIHPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFSDAVATD 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ V ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P Sbjct: 181 PSALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+R +S+ R R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H+IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353 >gi|325295424|ref|YP_004281938.1| flagellar biosynthetic protein FlhB [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065872|gb|ADY73879.1| flagellar biosynthetic protein FlhB [Desulfurobacterium thermolithotrophum DSM 11699] Length = 347 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 9/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + KTE + ++ + A EG S++ + ++L L F+ + Sbjct: 1 MAKDPS---KTEKATPRRRQKAKEEGQVLKSQDIPIAFTLLITSTLLYFYIPFAYKKLLQ 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ L + + + + + L++P L+ + GI S +IQ + +L Sbjct: 58 LFTFDFRTSNNVNLWNNYLVS------AKTFALLILPVFLVLFLGGIFSNIIQFGFLFSL 111 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ +G+ R++S+ L ++ +K+I+ + S + Sbjct: 112 KPLLPKLDNINPIKGLGRLFSLKTLFETFRNTLKLIIALAVGYFSGKYILSDFFSLSFIS 171 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ + + + L + D + ++ LKMSK+EIK+E KQ G+P Sbjct: 172 LNNQIILMLKYTLLLFFIFGLLSLPIAAADFLFRRWEYEENLKMSKEEIKEERKQYEGHP 231 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+ + R +MM +A ++ITNPTHYA+ALRY + + AP ++AKG + IA Sbjct: 232 LIKSAIRRKQREIAMKRMMAEIPKADVVITNPTHYAVALRYERGKMHAPKVIAKGVDNIA 291 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++KIA EHNIPI E P LAR L++ I S IP FY+A+A+++ K+Y KK Sbjct: 292 LKIKKIALEHNIPIEENPYLARVLYESCDIGSFIPEEFYQAIAKILAKVYKKK 344 >gi|207725003|ref|YP_002255400.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2] gi|206590230|emb|CAQ37191.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2] Length = 387 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 175/355 (49%), Gaps = 7/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S++++E A EG+ P SRE F + L S+ Sbjct: 1 MSE-ESDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLTVSAGGLWVMG----ESIVR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118 LA + D + ++ L V+ GL+L ++ + L + Sbjct: 56 AASAFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAI 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P R+ G+KR++S+ L+ + K++LVG + + ++ Sbjct: 116 SFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPR 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + ++ + + + + +D+ + Q+ K +M+K+E++ E ++S G Sbjct: 176 QDLVAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG ++ Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350 >gi|78045982|ref|YP_362157.1| type III secretion system protein HrcU [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927677|ref|ZP_08188905.1| HrcU protein [Xanthomonas perforans 91-118] gi|78034412|emb|CAJ22057.1| HrcU protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541878|gb|EGD13392.1| HrcU protein [Xanthomonas perforans 91-118] Length = 357 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFSDHMRALMTIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 62 DFSEHTR--DAAAINRALGHIGIQGLLLMLPFLAACLVAGMAGGAFQTGLNASLKPVAPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P + Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRALMPMIIGLAYETPLDVAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + +MSK E K E+K+S G+P IK+++ Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQRWLFIRDKRMSKDEQKREVKESEGDPEIKDKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + AIP ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEPLFETVAVVLRWV 341 >gi|42524691|ref|NP_970071.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100] gi|39576901|emb|CAE78130.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100] Length = 353 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ K+E + + E+ GN ++E + +LA + + + Sbjct: 1 MAEDNG--EKSEEATDARREEFRKRGNVAHTKELASAVMLLAAAGGV-YALGRFFFKEMY 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ K+ + + + A L+ P LL + G S ++Q + Sbjct: 58 EVFQHSFGDDMVKMVREGNFTEAAQYCGMKAMILIAPVLLFAGIIGAASSIVQIGFLQVE 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + V P+F++V+ EG KR++S+ +V +KS +K+ V ++ L + ++ + Sbjct: 118 DAVSPNFEKVNPVEGFKRVFSMRAVVEALKSILKMGAVAMVLYFLLRSEVTQVPYMLTYS 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I+ + V K+L + + + D + K+ M+KQE+K+E KQ G+P Sbjct: 178 IDQIIAYIGVIVVKLLGGVGAVMLVIAGADYFYQRFDLEKKMMMTKQEVKEEHKQREGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+R + I R +MM +A ++ITNPTH A+ L+Y AP +VA G + +A Sbjct: 238 MIKSRIRRIQREMASKRMMSEIPKADVVITNPTHIAVVLKYT-DNLPAPQIVAMGADHVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++IA E+N+PI E LAR++FK + I IP + AVA+++ +Y + Sbjct: 297 EKIKEIARENNVPIVENKPLARTIFKTLKIGQVIPRELFVAVAEVLSYVYRLR 349 >gi|331671779|ref|ZP_08372575.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] gi|331070768|gb|EGI42127.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280] Length = 379 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPDAIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI+R++S +L K VK +V ++ +SL N+ L + Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLMMLWVSLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ +LD+ + + LKM+KQE+K+E K G P Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|315126008|ref|YP_004068011.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913] gi|315014522|gb|ADT67860.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913] Length = 376 Score = 329 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSEN + KTE P+ K+++ A +G S+E + ++ + LL +F+ YS+ Sbjct: 1 MSEN-SSQEKTEQPTEKRLKKAKEDGQVARSKELNTAILLMVSIAGLL-WFANLFYSLFV 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + + L+ ++ + P LLL + + V + Sbjct: 59 NLMNSTMVLDHTIINNKKMMPIALSDAIMNMLSTLTPFLLLSFCAMWITGCLPGGFVFSK 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V +++ G+ +++ +LV +KS +KI L+ + LT+ + ++ + + Sbjct: 119 KLVALKMSKLNPLTGLGKMFGKQSLVELLKSILKITLLAICLYTFLTKLWMQLMMLQNLD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L++ + + + V+D+ + Q K+KM+ QE+K+E K S G+P Sbjct: 179 IKVAIGQGIELLFLSLMITVTLLLFIAVIDVPFQQKQIADKIKMTHQEVKEERKSSDGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IKN+ + I + K+ E A +I+TNPTHYA+A++Y + AP +VAKG + +A Sbjct: 239 EIKNKIRQIQYQQSNRKIEERVPTADVIVTNPTHYAVAIKYSEEAAKAPYVVAKGVDEMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A +N I E P+LAR+++ ++ +P Y AVA ++ + K Sbjct: 299 LRIREVARMNNKEIIEIPALARAIYFSTRVDQEVPNGLYSAVAYVLTYVLQLK 351 >gi|89068708|ref|ZP_01156094.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] gi|89045671|gb|EAR51733.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] Length = 373 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 107/357 (29%), Positives = 195/357 (54%), Gaps = 5/357 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ +KTE PS +K++ A ++G+ P SRE + + ++ F + + Sbjct: 1 MAEDEDKHSKTEQPSERKLKKARDKGDVPASRETGTAMVVFSLMLLSAFLIPSVGSGLVA 60 Query: 61 DLHVLLASATQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L L+ A Q +++ ++ + L + L+ R++ P LL ++ + LIQ Sbjct: 61 ALGALIDVAGQVEIDSGRAGLADVSALSSELTGQVGRVLAPLFLLMIVGALFGVLIQGET 120 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V++L ++P + ++S G+KR++S + +V F+K+ +K+++V I T + Sbjct: 121 VVSLERIRPKYSKISPLGGVKRLFSADMIVEFLKNTLKVVIVAAIGTWIARRAVSQ-VWM 179 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 S P ++ V +L+ + + DI W QW K +MS +E++DE K++ Sbjct: 180 GSLAPEALPGFVRGEVTAMLMATAALLVPFAIADILWKRAQWTKKQRMSLKEVRDEHKET 239 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK ++ I R R R ++ A +AT+IITNPTH+A+ALRY + APV VAKG Sbjct: 240 EGDPFIKQKRTDIRRERARQRIATAVPKATVIITNPTHFAVALRYQPGVDQAPVCVAKGA 299 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A ++R++ E++IPI E LARSL I++ +P ++A+A++I + K Sbjct: 300 DHVAARIRELGRENDIPILENKPLARSLHAVAEIDAVVPVEHWQALAEIISWVMDLK 356 >gi|144900464|emb|CAM77328.1| Type III secretion exporter [Magnetospirillum gryphiswaldense MSR-1] Length = 357 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 196/353 (55%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ +A D+KTE P+ K++ DA EGN P + EA S++ I L F +++ + Sbjct: 1 MAD-EASDDKTEEPTGKRLGDARTEGNIPQTMEAKAMMSLVLAAIMLGFLAPDMAHNIKA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + ++ LL ++IP L+ + + S + + Sbjct: 60 VITPYIEQVHLMEVGPDGLGELLLHLSLGVLQSMIIPFALVIFLGVVASLAQTKGFLWVP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P FK+++ EG KRI+S+N L+ K +K+ ++G ++ L + + + + Sbjct: 120 KKIAPDFKKLNPLEGYKRIFSVNQLMELGKQLIKLTVLGLLLGWVLWGSIGEIENLANLE 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +IL + + ++++ L+ + L V D + +W K+KM+KQE+KDE KQ+ G+P Sbjct: 180 LMAILEYISDKIFWMVLVTLMMVTLLAVGDYLFQRWRWMEKMKMTKQEVKDEHKQAEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + KS+ R R +MM A +A ++ITNPTHYA+AL+Y AP+LVAKG +L+A Sbjct: 240 QVKAKIKSLRFQRARKRMMAAVPKADVVITNPTHYAVALKYDLDAMSAPILVAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++R +A EH++PI E P +AR+LF V ++ IPP YKAVA++I + K Sbjct: 300 KRIRDLADEHDVPIVENPPVARALFAAVELDQEIPPEHYKAVAEIIGYVMRLK 352 >gi|162417792|ref|YP_001604479.1| type III secretion appartus protein YscU [Yersinia pestis Angola] gi|162354812|gb|ABX88759.1| type III secretion appartus protein YscU [Yersinia pestis Angola] Length = 354 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 182/348 (52%), Gaps = 3/348 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KKI DA +G S+E + ++ L +L + S + S L +L Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTA-LIVALSAMLMWLSDYYFEHFSKL--ML 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++ Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A E +PI + LAR+L+ ++ IP +A A+++ + + I Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346 >gi|56419772|ref|YP_147090.1| flagellar biosynthesis protein FlhB [Geobacillus kaustophilus HTA426] gi|56379614|dbj|BAD75522.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426] Length = 360 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S + S +LA + L + + L+ Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 L + + L AS L+ P ++ + +Q + + +K + Sbjct: 73 DYASASL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDW 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P L Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K++++A Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMAMKIKEVA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|206889713|ref|YP_002249863.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741651|gb|ACI20708.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 353 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M E +TE + ++ E A +G P SRE + +Y +F + S+ Sbjct: 1 MPEE--LQERTEQATPRRREKARQKGEVPRSRELTGIIGTWMIFLYFVF-SGTFLISIMQ 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + I + + + + P + + + + IQ + Sbjct: 58 HMKEAFTRVKNPEFVASAIITIIKDEIKWYFIQFL-PIGGVLLFGVLLVHFIQTGFLFTG 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++S +GIK+++S+N L +K +K++ +G +I L ++ + I + Sbjct: 117 ATLVPDVSKISPLKGIKKLFSLNALFETIKGILKLVALGIVIYFVLKKDVNILPLLIDMD 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +I +F + ++++ L+ + +D + Q+ L+M+KQEIK+E K++ G+P Sbjct: 177 VKAIAGISFQKIYQLILACLIMLTVFAGIDFAYQRWQYERNLRMTKQEIKEEFKETEGSP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ R +S+ R R +MM+ +A ++ITNP H A+ ++Y +AP +VAKG NL+A Sbjct: 237 MVRARIRSLQREMARKRMMQEVPKADVVITNPLHLAVCIKYDSKNMNAPAVVAKGANLLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++IA +PI+E LAR+L++ +P+ IP YKAVA ++ +Y K Sbjct: 297 ERIKEIARASGVPIYENKPLARALYR-IPLGEEIPEALYKAVATILATVYKIK 348 >gi|312879606|ref|ZP_07739406.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM 12260] gi|310782897|gb|EFQ23295.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM 12260] Length = 390 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 182/347 (52%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + K+E + +K + + EG S++ +L L+ LL F V L+ Sbjct: 37 SEEKSEPATPRKRQKSREEGQVVRSQDLVASVILLLGLLMLLMFGLFTGELVVGLFQDLI 96 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A ++++ +V LT S +P L + +G + Q VL + P Sbjct: 97 AYLPSKEIQGDRWLVLPLTRSSRVFFLSWLPLGLCCTLGALGLMVYQVGFVLTPKPLIPK 156 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + R++ EG+KR+ SI +LV +K +K +L+ I+ +L ++ ++ + + Sbjct: 157 WNRLNPVEGMKRLISIRSLVELVKGILKALLLLLILYSALRKDLAALISTMRYPFTQGMG 216 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + + + L + D + ++ ++MSKQEIK+E KQ G+P++K R Sbjct: 217 AVVDKIWSLSFKMAMMLFVLGLFDYLYQRWEFERSIRMSKQEIKEEYKQMEGDPLVKRRI 276 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R + +MM +A ++ITNPTH ALAL+Y + +AP+L+AKG+ IA+K+R++ Sbjct: 277 RQRQRELAQRRMMAEVPKADVVITNPTHLALALQYDREIMEAPLLLAKGEGYIARKIREV 336 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A EH IPI + P LA++L+++V + +P FY+AVA+++ +Y K Sbjct: 337 AEEHKIPIVQNPPLAQALYREVEVGGEVPEAFYRAVAEVLAFVYRLK 383 >gi|300697969|ref|YP_003748630.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957] gi|299074693|emb|CBJ54250.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957] Length = 387 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 175/355 (49%), Gaps = 7/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S++++E A EG+ P SRE F + L S+ Sbjct: 1 MSE-ESDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLAVSAGGLWVMG----ESIVR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118 LA + D + ++ L V+ GL+L ++ + L + Sbjct: 56 AASAFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAI 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +L + P R+ G+KR++S+ L+ + K+ LVG + + ++ Sbjct: 116 SLKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLALVGGVGWWLILHYRDDFVELPR 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + ++ + + + + +D+ + Q+ K +M+K+E++ E ++S G Sbjct: 176 QDLAAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG ++ Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350 >gi|10955567|ref|NP_052408.1| YscU [Yersinia enterocolitica] gi|332163589|ref|YP_004424931.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|4324354|gb|AAD16831.1| YscU [Yersinia enterocolitica W22703] gi|318608194|emb|CBY78168.1| type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667819|gb|ADZ44462.1| putative type III secretion protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 354 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 179/348 (51%), Gaps = 3/348 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KKI DA +G S+E + I+A L+ ++ + L Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTTLIVALSAMLMGLSDYYFEHLSRLM---L 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++ Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI Sbjct: 239 RQFHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A E +PI + LAR+L+ ++ IP +A A+++ + + I Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346 >gi|218887500|ref|YP_002436821.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758454|gb|ACL09353.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 346 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 169/345 (48%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P+ K++ +A +G+ S++ ++LA YL + + V S Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDVGSALTVLAVGAYLAIKGGDIFAEI---MAVTELS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q L + L T ++ A +V+P + L M G+ + L Q + L P + Sbjct: 60 MRQMSLPFDQALPLLATAVTRGAIGIVLPVVGLAMCVGLLANLAQTGVLFALKAAMPKLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +S + K+++S+ N V +K+ +K+ ++G + L+++ + +L Sbjct: 120 NMSPGKWFKKVFSVRNAVEMLKNCIKVAVLGWAVWKVLSDHMRGLFAIPDGGIGGLLTVL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 T R +++ + LD + Q+ + M+K E+K E K+ G+P IK ++K Sbjct: 180 GITARDMVLTSAAVFCVIAALDYMYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + I + +A +I+TNPTHYA+AL Y + PV++AKG+ L+AK+M +IA Sbjct: 240 LHQEMITQNTLSNVRKAKVIVTNPTHYAVALDYEKDRTPLPVILAKGEGLLAKRMVEIAR 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E IP+ + LARSLF + N+ IP VA+++ + + Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKDLIGPVAEVLRWVQSLQ 344 >gi|59889759|emb|CAH19114.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia coli] gi|284920023|emb|CBG33079.1| lateral flagellar export/assembly protein (FlhB-like) [Escherichia coli 042] Length = 379 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + Q ++ + I L H L + ++ L + + S L+ + Sbjct: 59 ESFISVHQYAQ-EINNPDAIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F ++S +GI+R++S +L K VK +V ++ +SL N+ L + Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNNFAAFLGLQALP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ +LD+ + + LKM+KQ++K+E K G P Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQKLKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E + + E P LARS++ +N IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349 >gi|28373013|ref|NP_783682.1| YscU [Yersinia enterocolitica] gi|32470295|ref|NP_863530.1| YscU [Yersinia enterocolitica] gi|122815819|ref|YP_001004085.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579353|gb|AAK69230.1|AF336309_25 YscU [Yersinia enterocolitica] gi|23630585|gb|AAN37541.1| YscU [Yersinia enterocolitica] gi|121663693|emb|CAL10055.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923238|emb|CBW54704.1| YscU, T3SS component, autocleavable regulator,PMID 19165725 [Yersinia enterocolitica (type O:8)] Length = 354 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 179/348 (51%), Gaps = 3/348 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KKI DA +G S+E + I+A L+ ++ + L Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHLSRLM---L 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++ Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI Sbjct: 239 RQFHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A E +PI + LAR+L+ ++ IP +A A+++ + + I Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346 >gi|163789632|ref|ZP_02184070.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7] gi|159875164|gb|EDP69230.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7] Length = 355 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE S KK+ DA +G P S + + + + ++ F + + + Sbjct: 1 MAEKDG---KTEKASPKKLRDARKKGEIPKSPDLTSAVTFIVFILSATFLGNYILKNSLL 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + + + + L L P L + + S ++Q + + Sbjct: 58 YLQNYLTAGFSVDGLE-NDLADIGMKAILFTLVLAGPFLAIAFVAAFISSIVQTGFLFSA 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ G K ++S L +K+ K+ LV + +L + + +++ S Sbjct: 117 EPIKFKLSKINPISGFKNMFSKKTLFTLVKNVAKLTLVFWMAYKTLETSIYLIINSSSIG 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I + V ++ + + + L ++D + + L+MSKQEIKDE K+S G+P Sbjct: 177 TEKIFFLMSDLVMELGTQLGVLLLILGLVDYIYQVYDHRKNLRMSKQEIKDEYKESEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK++++ R + + E AT +ITNPTH A+A+RY + +++ P++VAKG + A Sbjct: 237 QIKSQRRQRYRQLTKGALRE-VETATAVITNPTHLAIAIRYEKGKDEVPIIVAKGADHQA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+ A ++PI E +AR+++K V I +P Y+A+A+++ +Y + Sbjct: 296 AKIRERAKAFDVPIIENKPVARAMYKSVEIGQPVPIDLYQAIAEILALVYQME 348 >gi|195953033|ref|YP_002121323.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1] gi|195932645|gb|ACG57345.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1] Length = 353 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 185/348 (53%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +NKTE + + +EGN S+E +L L FF I+ + SDL + Sbjct: 2 ASENKTEKATPYRRGKLKSEGNVAKSQEVVSALLMLVSTGAL-FFIGYKIFILFSDLILD 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + S L + P +L ++ + Y++Q + ++P Sbjct: 61 GSLRIDDPSFTPSDATKFLGLSFKKLLSDITPLFILAVLIVVFGYILQFGFIFTFKPLEP 120 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F +++ +G+K ++S+N L +K+ +K++L+ L ++ T++ +P L Sbjct: 121 NFSKLNPVDGLKNLFSLNALFELVKNSLKVMLLLIASFFILYFSFHTLVFSSYMSPSKGL 180 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + K+LI I + L LD + + ++KMSKQE+KDE KQ GN +K + Sbjct: 181 SEIARLIFKLLISIGIIGLMLAGLDFAYKKFDYEKRIKMSKQEVKDEFKQFEGNIEVKAK 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R +MM+ +A+++ITNPTH+A+ALRYI ++ AP++VAKGQ+ +AKK+ + Sbjct: 241 IRRRMMELSRSRMMQEVPKASVVITNPTHFAVALRYIPKQDRAPIVVAKGQDYMAKKIIE 300 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA +++P+ +P LAR+L+K V I IPP FYKAVA++I I +K Sbjct: 301 IAELNDVPVVRKPELARALYKAVDIEEEIPPEFYKAVAEIIAYIVKRK 348 >gi|83749403|ref|ZP_00946397.1| Probable transmembrane flagellar biosynthetic protein (flhB) [Ralstonia solanacearum UW551] gi|207738850|ref|YP_002257243.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum IPO1609] gi|83723930|gb|EAP71114.1| Probable transmembrane flagellar biosynthetic protein (flhB) [Ralstonia solanacearum UW551] gi|206592220|emb|CAQ59126.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum IPO1609] Length = 387 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 174/355 (49%), Gaps = 7/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S++++E A EG+ P SRE F + L S+ Sbjct: 1 MSE-ESDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLTVSAGGLWVMG----ESIVR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118 LA + D + ++ L V+ GL+L + + L + Sbjct: 56 AASAFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLALAALAPLALTRGAI 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P R+ G+KR++S+ L+ + K++LVG + + ++ Sbjct: 116 SFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPR 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + ++ + + + + +D+ + Q+ K +M+K+E++ E ++S G Sbjct: 176 QDLVTGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K R +++ R + +MM +A +I+TNPTHYA+ALRY + E AP ++AKG ++ Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A K+R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y + Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350 >gi|261419437|ref|YP_003253119.1| flagellar biosynthesis protein FlhB [Geobacillus sp. Y412MC61] gi|319766252|ref|YP_004131753.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52] gi|261375894|gb|ACX78637.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC61] gi|317111118|gb|ADU93610.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52] Length = 360 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + +K ++ +G S + S +LA + L + + L+ Sbjct: 13 GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + L + + L AS L+ P ++ + +Q + + +K Sbjct: 73 DSASPSL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDG 131 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R++ +G+KR++S+ LV +KS +K ++G ++ +L + +S P L Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K+ + + L + D + ++ ++MSKQ+IKDE K++ G+P+IK+R K Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R +MM+ A ++ITNPTHYA+AL+Y + +APV+VAKG + +A K++++A Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H + E LA++L++Q + IP F+KAVA+++ +Y K Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357 >gi|283784007|ref|YP_003363872.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] gi|282947461|emb|CBG87008.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] Length = 379 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 178/353 (50%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + + KTE PS++K+ A EG P S++ L +S+ A + + F P Sbjct: 1 MADS-SSEEKTEKPSAQKLRKAREEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + V + Q ++ + + + L H L ++ ++ L + + + LI + Sbjct: 59 ESFVSVHQYAQ-EINNPAIVGQFLQHHLLIMAKFILTLLPMPAAA-LAASLIPGGWLFLP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +V+ +GI R++S +LV K VK +++ ++ +SL N+ + L + Sbjct: 117 KKMLPDFSKVNPLKGIGRLFSAEHLVETGKMMVKAVVILVMLWLSLRNNFASFLGLQALW 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + V+ ++ V+D+ + + LKM+KQE+K+E K G P Sbjct: 177 FKQAVSDGLALYSSVMRNFVILFVFFAVIDVPLAKKMFTKGLKMTKQEVKEEYKNQEGKP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R ++ + +A ++ITNPTHYA+AL+Y Q+ AP +VAKG + IA Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E + + E P LARS++ IN IP Y+A+A ++ + K Sbjct: 297 LYIRQVAAESQVEVVEFPKLARSVYYTTQINQQIPFQLYRAIAHVLTYVLQMK 349 >gi|323341371|ref|ZP_08081615.1| flagellar biosynthesis/type III secretory pathway protein [Lactobacillus ruminis ATCC 25644] gi|323091248|gb|EFZ33876.1| flagellar biosynthesis/type III secretory pathway protein [Lactobacillus ruminis ATCC 25644] Length = 355 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 92/352 (26%), Positives = 169/352 (48%), Gaps = 10/352 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 D KTE P+ K+I D+ G S + ++ + + I + Sbjct: 3 DKDGKTEKPTPKRIRDSRKRGEVAKSPDVVAAVALFVFAMLFVPLCEFSINHFSPYFVNY 62 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVI----PGLLLFMMFGIGSYLIQRIPVLNLN 121 L L + ++ L ++ A ++ P +L+ ++ GI ++Q + Sbjct: 63 L-----EMLANPDQMIGSLGKIAFQAILMIFIMTGPFMLIAIVIGIVGNIVQVGLLFTAT 117 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +KP FK+++ G+K+++S+ L N KS VK+I+VG + E T+ Sbjct: 118 PLKPDFKKLNPLNGLKQMFSLRALQNLAKSLVKLIIVGYLCYKKYVETIPTLTSLSEVGT 177 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +L + + I + + ++V D + + LKMSKQEIKDE+KQ G+P Sbjct: 178 GKVLLFMLNICKDLATQIGILLVVVSVFDYAFQRYTHMKSLKMSKQEIKDEMKQMEGDPQ 237 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K ++K+ R + AT+++ NPTH A+A++Y P ++AKG + +A Sbjct: 238 VKAQRKAKHREM-IRNAVAQVKDATVVLANPTHLAIAIKYDAEGAGVPQVLAKGADDVAM 296 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++ A + N+PI E LAR+L+ +V IP FY+A+A++I +Y + Sbjct: 297 RIKEEAKKQNVPIIENKPLARALYPKVDAGDFIPVEFYEAIAEVIALVYKLE 348 >gi|163800125|ref|ZP_02194026.1| flagellar biosynthetic protein [Vibrio sp. AND4] gi|159175568|gb|EDP60362.1| flagellar biosynthetic protein [Vibrio sp. AND4] Length = 375 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +K+E S +K++ A EG P ++E + LA ++ + S+ S Sbjct: 1 MSEQ-SSQDKSEKASQQKVKKARQEGQIPRAKEFTTALIFLAVTMFFYSQLNSTWESM-S 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + T+ LE+ +V +++P + ++ GS ++ + L Sbjct: 59 GVFRYNMTLTKADLENPKQLVEHFGQSLAVLIEMLLPLFTVIIIVTCGSSMVLGGWMFRL 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P +++ GIKRI+S +LV +KS VK++++ I+ L + +L + Sbjct: 119 ASVMPKLSKLNPISGIKRIFSTRSLVELVKSTVKVLVIFGILYGYLNSHLQPLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + V+DI + + +L+M+KQE+K+E K + G P Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTH+A+AL+Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHFAVALKYEPSLSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I AIP Y A+A ++ + K Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAIAHILTYVLQLK 351 >gi|34558296|ref|NP_908111.1| flagellar biosynthesis protein FlhB [Wolinella succinogenes DSM 1740] gi|34484015|emb|CAE11011.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLHB [Wolinella succinogenes] Length = 352 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 174/352 (49%), Gaps = 5/352 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTE PS KKIE A +GN P S E +F +L LI + F+ + Sbjct: 1 MADE---EEKTEEPSGKKIEKAREDGNVPKSPEVVVFFGLLVGLILIYVLFTYWVDGTGR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 H + + + + L ++L LVIP + M+ G+ + Q +L+ Sbjct: 58 VFHQV--TPYFHEEIGRKDAISLAISIALEYFLLVIPLFIALMIIGVAGNVSQFGFLLSS 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ VK++ I + Sbjct: 116 KAIEPKFSKLNPITGLKNLFSLKKLLDGTLLTVKVLTAFGIGFWVFLSFIGELTTVSLFP 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++LLF + +D +Q++ L+M+KQE+KDE KQ GNP Sbjct: 176 LFDQMRWFKDKALILAAILLLFFFVMASIDFAIKRYQYFKSLRMTKQEVKDEYKQMEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +MM+ A ++ITNPTHYA+ALRY + AP ++AKG + +A Sbjct: 236 EIKRKIRQLMMQAAMKRMMQQLPTADVVITNPTHYAVALRYNTQKERAPRVIAKGVDFMA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++++IA EH I I E +LAR L+K ++ IP ++AVA+++ +Y Sbjct: 296 IRIKEIAREHEIQIVENKTLARELYKNADVDKEIPETLFQAVAEVLAYVYKL 347 >gi|332187868|ref|ZP_08389601.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17] gi|332012029|gb|EGI54101.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17] Length = 375 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 5/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE KTEAP+ K+ + A +G SR+ + ++A + +L+F + + + Sbjct: 1 MSE---GGEKTEAPTQKRRQKAREDGQILRSRDLAAALVMMAGIAWLMFAGPTLLGACKA 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + +ED L+ + + ++ I S N Sbjct: 58 VMAASF-QFSHADVEDFEPFRPLM-EAGWKLLPSLASLFAVTIVATIASQAGLGSLQFNP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KRI+ + KS +KI+L+G + L + L ++ Sbjct: 116 KALTPKPSKLNPASGLKRIFGMQGWTELGKSLLKIVLLGALGGYMLWTSSRATLGLAQSD 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +S + T +L+++ + + D+ Q SKLKM+KQEIKDE K+S GNP Sbjct: 176 LNSAIGSLGGTFITILLVMGFGLVLIAGFDVPIQIFQLLSKLKMTKQEIKDEHKESEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 K ++ R + A A +I+TNPTH+A+ALRY + +++ PV+VAKG+ A Sbjct: 236 EAKAHIRAKQREMSHRAVRAAVQEAHVILTNPTHFAVALRYERGKDEVPVVVAKGRGATA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +R++A E P+ E P LAR+++ + Y+A+A ++ ++ Sbjct: 296 LAIRELAAELATPVLEYPQLARAVYYTSREGQEVRADLYQAIAVVLAFVF 345 >gi|212702654|ref|ZP_03310782.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098] gi|212673926|gb|EEB34409.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098] Length = 347 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 175/347 (50%), Gaps = 3/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ K++ D+ +G S++ +++A +YLL S + ++ + + Sbjct: 2 SSEKTEQPTPKRLRDSREKGQVAKSQDVPSALTVMAVAVYLLAMSSDMLNTMQTMGEAPM 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + E + +T L A R+ +P + + M+ + + L+Q + ++ P Sbjct: 62 LLMDRPFEEALP---LAVTSTLLCALRVALPLIGMVMVVALCANLMQVGVLFSVQAAMPK 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + +S+ + K+++S+ NLV F+K+ +K++++G + + ++ + + + Sbjct: 119 LENLSMNKWFKQVFSLKNLVEFLKNIIKVLILGISVYVIFSDYMPQLFRIPQGDIGDMWR 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++++ + D + Q+ + MSK+E+K E K+S G+P+IK ++ Sbjct: 179 LLGSVCGDLVLVSAGVFCVIAAADWCFQRWQFNKQHMMSKEEVKREFKESEGDPLIKGKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K + + I + +A +++TNPTH+A+AL Y + PV++AKGQ ++A++M + Sbjct: 239 KQLHQEMIAQNQIANVRKAKVLVTNPTHFAVALDYEKDRTPLPVILAKGQGVLAQRMIET 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E IPI LARSL++Q N+ IP VA+++ + + Sbjct: 299 AREEGIPIMRNVPLARSLYEQGTENAYIPQDLIGPVAEVLRWVQSLR 345 >gi|16082735|ref|NP_395181.1| needle complex export protein [Yersinia pestis CO92] gi|31795273|ref|NP_857735.1| needle complex export protein [Yersinia pestis KIM] gi|31795476|ref|NP_857930.1| needle complex export protein [Yersinia pestis KIM] gi|45478537|ref|NP_995364.1| putative type III secretion protein YscU [Yersinia pestis biovar Microtus str. 91001] gi|51593916|ref|YP_068483.1| yscU; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108793657|ref|YP_636807.1| type III secretion protein [Yersinia pestis Antiqua] gi|149192692|ref|YP_001293924.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|165927774|ref|ZP_02223606.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. F1991016] gi|165940072|ref|ZP_02228606.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. IP275] gi|166011729|ref|ZP_02232627.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. E1979001] gi|166214469|ref|ZP_02240504.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. B42003004] gi|167401916|ref|ZP_02307402.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422435|ref|ZP_02314188.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422465|ref|ZP_02314218.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422883|ref|ZP_02314636.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426855|ref|ZP_02318608.1| type III secretion appartus protein YscU [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897581|ref|YP_001874692.1| YscU/HrpY family type III secretion protein [Yersinia pseudotuberculosis PB1/+] gi|229896863|ref|ZP_04512023.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|229900218|ref|ZP_04515354.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491102|ref|ZP_06208174.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM D27] gi|294496841|ref|YP_003560538.1| needle complex export protein [Yersinia pestis Z176003] gi|322836573|ref|YP_004210069.1| type III secretion appartus protein YscU [Yersinia pestis Java 9] gi|57015240|sp|P69986|YSCU_YERPE RecName: Full=Yop proteins translocation protein U gi|57015241|sp|P69987|YSCU_YERPS RecName: Full=Yop proteins translocation protein U gi|475126|gb|AAA27681.1| yscU [Yersinia pseudotuberculosis] gi|2996233|gb|AAC62556.1| Yop proteins translocation protein U homolog [Yersinia pestis KIM 10] gi|3822064|gb|AAC69784.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832467|emb|CAB54924.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357159|gb|AAS58555.1| putative type III secretion protein YscU [Yersinia pestis biovar Microtus str. 91001] gi|51591613|emb|CAF25417.1| yscU; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108782204|gb|ABG16259.1| type III secretion protein [Yersinia pestis Antiqua] gi|148872350|gb|ABR14840.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|165911982|gb|EDR30625.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. IP275] gi|165920210|gb|EDR37511.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. F1991016] gi|165989336|gb|EDR41637.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. E1979001] gi|166204362|gb|EDR48842.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. B42003004] gi|166958173|gb|EDR55194.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958672|gb|EDR55693.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958702|gb|EDR55723.1| type III secretion appartus protein YscU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048644|gb|EDR60052.1| type III secretion appartus protein YscU [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054154|gb|EDR63981.1| type III secretion appartus protein YscU [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700607|gb|ACC91235.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis PB1/+] gi|229686738|gb|EEO78818.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700134|gb|EEO88173.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|262363852|gb|ACY60572.1| needle complex export protein [Yersinia pestis D106004] gi|262364009|gb|ACY64346.1| needle complex export protein [Yersinia pestis D182038] gi|270334845|gb|EFA45624.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM D27] gi|294352429|gb|ADE66486.1| needle complex export protein [Yersinia pestis Z176003] gi|317374477|gb|ADV16652.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161347|gb|ADW67053.1| type III secretion appartus protein YscU [Yersinia pestis Java 9] Length = 354 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 178/348 (51%), Gaps = 3/348 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KKI DA +G S+E + I+A L+ + + L Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM---L 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++ Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A E +PI + LAR+L+ ++ IP +A A+++ + + I Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346 >gi|294625836|ref|ZP_06704452.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599864|gb|EFF43985.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 357 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DAL +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDALRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFADHMRALMTIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 62 DFP--ENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++ Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341 >gi|262167479|ref|ZP_06035185.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27] gi|262024051|gb|EEY42746.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27] Length = 359 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 1/334 (0%) Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79 + A +G S+E + S ++ + L++F + + L ++ ++ D+ Sbjct: 2 QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFE-LSREEIFDLGK 60 Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139 + ++ ++ ++ L + + + P +++ G+KR+ Sbjct: 61 LFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSAEAAMPKLSKMNPLSGLKRM 120 Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199 + + + V +KS +K++LV + + + + ++HA + +++I Sbjct: 121 FGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLLI 180 Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM 259 + + +DI + Q +LKM+KQE+KDE K + G P +K R + + R + +MM Sbjct: 181 SCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMM 240 Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 A +A +IITNP H+++ALRY Q + APV++AKG + +A K+R+IA E++I I P Sbjct: 241 AALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAPP 300 Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L+ + IP + AVAQ++ ++ K Sbjct: 301 LARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334 >gi|319403947|emb|CBI77535.1| Flagellar biosynthetic protein flhB [Bartonella rochalimae ATCC BAA-1498] Length = 356 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 124/354 (35%), Positives = 200/354 (56%), Gaps = 1/354 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS E +++TE P+ KI +GN P SRE +F+S+++ + +F P I +T Sbjct: 1 MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLT 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L ++ + L+ L S + P L+L + I + +Q +P Sbjct: 61 YFLIQWLERPESWRINTAEDVKHLIYLLGGSVGLALAPILILIPLLSITASAVQNVPRFV 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P + R+S G KRIYS LV F+KS K+I V II I ++ ++ + Sbjct: 121 IERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYIIFFKSNTIFINALLT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + + + + + L LDI WS W +L+M+KQEIK+E K GN Sbjct: 181 DASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K R +S++R RIR +M+ AT+I+TNPTH+++ALRY + APV++AKG +++ Sbjct: 241 PMVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGLDIL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +R+IA EH IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K Sbjct: 301 ALHIREIAIEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354 >gi|169831895|ref|YP_001717877.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis audaxviator MP104C] gi|169638739|gb|ACA60245.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis audaxviator MP104C] Length = 359 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 176/354 (49%), Gaps = 2/354 (0%) Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E D+ KTE P+ +++++A +G S + + ++ A L+ I + Sbjct: 1 MAETRDSGQLKTEQPTPRRLQEARRKGQVAKSLDLTGAVTLAALLLLFFVGLEWFIIRLQ 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 V L + T L + +L L+L V+P + + + Q + Sbjct: 61 RLFLVYLQNFTSYSLTAENVNYLVLQSLAL-LGGAVLPAVAVAFFVTVLVSFAQVGFIFA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + +R++ +G KRI+S L F K+ +KI VG + L +L Sbjct: 120 PSVLAVKLERLNPVQGFKRIFSSRGLFEFAKAILKICFVGILCFWVLYARVGDLLVLSVT 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P LY + V + VLD+ + + + L M++ E++DE +Q+ G+ Sbjct: 180 SPGQGLYLLHNVLLTVAAAAAGAYLLIAVLDLVYQRYAHHKSLMMTRFEVRDEYRQTEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K+ + R +++ + RAT+++TNP H A+ALRY + E DAP++ AKG + Sbjct: 240 PHLKSWLRKRQREISMNRIKDEVPRATVVVTNPIHVAVALRYREGEMDAPLVTAKGAGYL 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A++++++A +H +P+ E LA+ L+++VP+ ++P Y+AVA+++ IY K Sbjct: 300 AERIKELAAQHKVPVVENRELAQYLYRRVPVGESVPVAVYQAVAEILAMIYRLK 353 >gi|206603139|gb|EDZ39619.1| flagellar biosynthesis protein, FlhB [Leptospirillum sp. Group II '5-way CG'] Length = 362 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 105/352 (29%), Positives = 184/352 (52%), Gaps = 3/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D + K E P+++K+E A EG SRE +LA L+ + + + Sbjct: 1 MA--DEFEQKQEEPTARKLEKAREEGQVARSREVGSLFFLLAALLLFGSVGHTVVVGLEN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A +L I L + + + P F+ I ++L Q PV ++ Sbjct: 59 QMEQGFVEAPSIRL-TPDSIGPYLGKILWNTLKTGFPLWGGFLAASILAFLFQGPPVWSV 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++RVS +G+ R++S +L+ K VK++LV ++ SL ++ + +A Sbjct: 118 KALVPKWERVSPVKGMGRLFSGRSLIELAKYLVKVLLVMFVVLWSLRGDWERLPALQAAG 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H +R L ++ + +LD Q L+M++ EI++E K++ G+P Sbjct: 178 VHRFFGALTGFLRDALYRLIPLFVVIAILDFLLQRIQLNRSLRMTRSEIREEFKETEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++R +SI R+ R +MM AT+++TNPTH+A+A+RY APV+VAKGQ+ +A Sbjct: 238 HVRSRIRSIQRAMARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +RKIA E +P+ E P LAR+L+ P++ IP FY+AVA+++ +Y + Sbjct: 298 LNIRKIAREARVPVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 349 >gi|188992470|ref|YP_001904480.1| type III secretion system protein HrcU [Xanthomonas campestris pv. campestris str. B100] gi|167734230|emb|CAP52438.1| type III secretion system protein [Xanthomonas campestris pv. campestris] Length = 357 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + + Sbjct: 2 SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 AT + D + + L + + L +P + + G+ +Q +L V P Sbjct: 62 DFATNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K ++G ++ L T++ P I Sbjct: 120 FDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + + +L + D + + +MSK E K E K+S G+P +K ++ Sbjct: 180 IGWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRAY 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L +V + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALH-EVELGEAVPESLFETVAVVLRWV 341 >gi|319405388|emb|CBI79007.1| Flagellar biosynthetic protein flhB [Bartonella sp. AR 15-3] Length = 356 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 121/354 (34%), Positives = 200/354 (56%), Gaps = 1/354 (0%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS+ ++KTE P+ KI +GN P SRE +F+S+++ + +F P I +T Sbjct: 1 MSDAKPDKESKTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICVFISFPAISKLT 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L ++ + L+ + + + P L+L + I + +Q +P Sbjct: 61 YFLVQWLERPESWRINTAEDVKHLIYLVGGNVGLALAPILILIPLLSITASAVQNVPKFI 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P + R+S G RIYS LV F+KS K+I V II + ++ ++ + Sbjct: 121 IERIRPQWSRISPANGFNRIYSKAGLVEFLKSLTKLIGVSLIIYLIFFKSNTIFINALLT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + + + + L LDI WS W +L+M+KQEIK+E K GN Sbjct: 181 DASALPKYIHKELINLSLSFTTAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K R +S++R RIR +M+ AT+I+TNPTH+++ALRY + APV++AKGQ+++ Sbjct: 241 PVVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGQDIL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +R+IA EH+IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K Sbjct: 301 ALHIREIAIEHDIPIFENITLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354 >gi|317486796|ref|ZP_07945612.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia 3_1_6] gi|316921959|gb|EFV43229.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia 3_1_6] Length = 346 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 169/345 (48%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P+ K++ ++ +G+ S++ ++LA +Y++ + S+ + + + + Sbjct: 3 DKTEQPTPKRLRESREKGDVCKSQDVPSALTVLALSVYIVVMGGHLLESLLAMMELPMKL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + E H+ A +V P + L M + + L Q + P + Sbjct: 63 LSTPYAEAAPRAAEATFHI---AVSIVAPLVGLVMAVALVANLGQVGILFAFKGAMPKLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 VS + ++++S+ NLV F+K+ +K+ ++G + + + ++ T+ ++ Sbjct: 120 NVSPSKWFQKVFSMKNLVEFLKNIIKVTVLGVTVWVVMRDHLPTLFAIQRGTIWTMWEVL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V+ +L+M + +D + Q+ MSK E+K E K+ G+P +K ++K Sbjct: 180 GMAVKDLLLMAAGVFCVIAAVDYLFQKWQYTKNHMMSKDEVKREYKEMEGDPQVKGKRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +A +++TNPTHYA+AL Y + PV++AKG+ +A++M ++A Sbjct: 240 LHQEMLSQNALGNVRKAKVLVTNPTHYAVALDYEKDRTPLPVILAKGEGFLAQRMIRVAQ 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E IPI LARSLF+ N+ IP VA+++ + + Sbjct: 300 EEGIPIMRNVPLARSLFENGTENAYIPKDLIGPVAEVLRWVQSLQ 344 >gi|16125329|ref|NP_419893.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15] gi|221234068|ref|YP_002516504.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000] gi|1147737|gb|AAA85127.1| third gene in fliQ operon; membrane protein homolog [Caulobacter vibrioides] gi|13422379|gb|AAK23061.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15] gi|220963240|gb|ACL94596.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000] Length = 361 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 110/353 (31%), Positives = 200/353 (56%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ P++KTE PS+KK+ DA +G+ S + +S+ + +L + + Sbjct: 1 MADDTDPESKTEEPSAKKLSDARAKGDVIKSADIPQLASLAGAVSVILLAGGWLTRDLMA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L +A A L ++ L L + LV+ +++ G +++ Q +L Sbjct: 61 ALTPFIAHAGTIDLSSGGAMIVLKQALLAALPALVL-VMVVTAFAGAAAHIAQTGFLLTP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F+++ L +G+ RI+ + +V F+KS VK +L G I L + + + + + Sbjct: 120 EKIKPDFQKLDLIKGLGRIFGPDGMVQFLKSAVKFLLTGVIAYFVLKPHVGEVRNLVGMD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +++ A + +LI ++L + + D W ++ ++++M+ QE+K+E KQS G+P Sbjct: 180 PAAMIPEAMKLSKGLLIAVILLLVATSAFDYFWQRMRFMNRMRMTLQEVKEEFKQSDGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK +++ I R R +MM+A +AT+++ NPTHYA+AL+Y Q E AP+ VAKG + +A Sbjct: 240 HIKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEQGETPAPLCVAKGVDDLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R +A EH +P+ E+P LAR+L+ V I+ IP ++AVA++I I + K Sbjct: 300 LKIRAVAEEHGVPVLEDPPLARALYASVEIDEEIPVEHFEAVAKVISFILNGK 352 >gi|85058003|ref|YP_453705.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] gi|84778523|dbj|BAE73300.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] Length = 387 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 175/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ K+EAP+ +++ A EG P S+E + +L+ L + Sbjct: 1 MAE-ESDLEKSEAPTPHRLQKARKEGQVPRSKELVSWLMLLSGWSLLWLAGGHLAQGMGL 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D ++ + L A P +L + G+ ++ + + Sbjct: 60 MLESGLTFSFHIN-GDRHWLLAQFSGLVRQALLACAPLILGVTLVAAGAPMLIGGVMFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V KR++ G+KR++S+ + F+K+ K+ LVG +L + M Sbjct: 119 KAVSLDLKRLNPFSGLKRLFSMQMIAEFIKTLFKVCLVGGACGTALWFVWPRMTQLAQGA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 PH ++ + + + +++I+L + + DI + KL+MS+ +I++E K+ G+P Sbjct: 179 PHRVMAESLSLISQCVLVIILALIPVVGFDILYQLFSHMKKLRMSRHDIREEYKEQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ + R + + +MM+ ++A ++I NPTHYA+AL+Y Q P L+AKG +A Sbjct: 239 QLKSLIRQRQRQQAQQRMMQDVAKADVVILNPTHYAVALKYEQMRMTTPRLLAKGAGAVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+ A +H IP P LAR+LF+ I SAIP Y AVA+++ +Y + Sbjct: 299 LNIRQRAEQHRIPTLVAPPLARALFRHCEIGSAIPVALYGAVAEVLAWVYGLR 351 >gi|110632668|ref|YP_672876.1| flagellar biosynthesis protein FlhB [Mesorhizobium sp. BNC1] gi|110283652|gb|ABG61711.1| flagellar biosynthetic protein FlhB [Chelativorans sp. BNC1] Length = 363 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 135/350 (38%), Positives = 217/350 (62%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE + KKI D + +G P SREA + +S LA L++++FF + Sbjct: 1 MAEGADKESKTEEATEKKIRDTVEKGQLPFSREAPVLASFLAILVFVVFFAEDRAVQLAG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + A L+ + + + + L ++V +LL + G+ + ++Q P L Sbjct: 61 FLAIFIERADGWSLKTQTDAIAIYRIVFLQIGKVVGIVMLLLVAAGVSASILQNTPRFVL 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P RVSL +G R++ LV F KS K+++VG ++ +L +L + + Sbjct: 121 ERIQPKLSRVSLAKGWSRLFGTRGLVEFAKSVGKMLVVGALVAFTLRHADTRLLSGMVTH 180 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + V +LI I LF+ + V D+ WS W L+MS+QE+KDE KQ+ G+P Sbjct: 181 PVAFTVTIRDLVINILIAIALFMTLVAVADLVWSRFSWRQDLRMSRQEVKDEQKQTDGDP 240 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ R +S+AR R R +MM A +AT++I NPTHYA+ALRY + ++ APV+VAKGQ+L+A Sbjct: 241 LMRARLRSVARDRARRRMMSAIPQATLVIANPTHYAIALRYQRDKDAAPVVVAKGQDLVA 300 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++R++A EHNIP+FEEP+LARS++KQV ++S IPP FYKAVA+L+ ++Y Sbjct: 301 LRIRELAREHNIPVFEEPALARSMYKQVSVDSLIPPQFYKAVAELVRRVY 350 >gi|319406964|emb|CBI80601.1| Flagellar biosynthetic protein flhB [Bartonella sp. 1-1C] Length = 356 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 125/354 (35%), Positives = 201/354 (56%), Gaps = 1/354 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS E +++TE P+ KI +GN P SRE +F+S+++ + +F P I +T Sbjct: 1 MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLT 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L ++ + L+ L SA + P L+L + I + +Q +P Sbjct: 61 YFLIQWLERPESWRINTAEDVKHLIYLLGGSAGLALAPILILIPLLSITASAVQNVPKFV 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P + R+S G KRIYS LV F+KS K+I V II + ++ ++ + Sbjct: 121 IERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYMIFFKSNTIFINALLT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + + + + + L LDI WS W +L+M+KQEIK+E K GN Sbjct: 181 DASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K R +S++R RIR +M+ AT+IITNPTH+++ALRY + APV++AKG +++ Sbjct: 241 PMVKARMRSLSRDRIRRRMIANVPTATLIITNPTHFSVALRYKPPLDYAPVVIAKGLDIL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +R+IA EH IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K Sbjct: 301 ALHIREIAVEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354 >gi|296274004|ref|YP_003656635.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM 7299] gi|296098178|gb|ADG94128.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM 7299] Length = 350 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 182/352 (51%), Gaps = 7/352 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P++KK+E A EGN P S E + +L +Y+LF+ + S+ Sbjct: 1 MADDTD---KTEEPTAKKLEKARGEGNVPKSGEVVGAAILLFGTVYMLFWSTYTYDSIKK 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + Q + + + + + P L+ ++ I ++Q + Sbjct: 58 LMIYIFNKIGQELTS--TDYYNMTNAIITTIFYSLAPFFLVVILLAIILNVVQFGFL--T 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N +K F++++ G+K ++S+ L+ K K+ L+ ++TI Y + + + Sbjct: 114 NPIKLKFEKLNPVSGLKGLFSLKKLLEATKLLAKLTLIVFVMTILFGLTYKGFIAMMDKD 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S L F + + IL + ++D ++ H ++ LKMSK+E+KDE K G+P Sbjct: 174 ITSSLDAMFTLLLYFVGAILFIVILFAIIDYFFTRHYYFKSLKMSKEEVKDEHKNMEGDP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + K I +M + A ++ITNPTHY++AL+Y N AP +VAKG + +A Sbjct: 234 KVKAKIKGIQYKLHYERMRASAKDADVVITNPTHYSVALQYDSAVNSAPKVVAKGIDFLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R +A E+ IPI E P+LAR+L+ Q+ I+ IP FY+A+A++ ++ Sbjct: 294 LKIRDVAKENKIPIIENPALARALYDQIQIDQEIPGEFYQAMAEVFSYVFEL 345 >gi|21230687|ref|NP_636604.1| type III secretion system protein HrcU [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769318|ref|YP_244080.1| type III secretion system protein HrcU [Xanthomonas campestris pv. campestris str. 8004] gi|21112276|gb|AAM40528.1| HrcU protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574650|gb|AAY50060.1| HrcU protein [Xanthomonas campestris pv. campestris str. 8004] Length = 357 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + + Sbjct: 2 SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 T + D + + L + + L +P + + G+ +Q +L V P Sbjct: 62 DFTTNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K ++G ++ L T++ P I Sbjct: 120 FDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + + +L + D + + +MSK E K E K+S G+P +K ++ Sbjct: 180 IGWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRAY 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L +V + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALH-EVELGEAVPESLFETVAVVLRWV 341 >gi|46562156|ref|YP_009141.1| hrpY/hrcU family type III secretion protein [Desulfovibrio vulgaris str. Hildenborough] gi|46447693|gb|AAS94359.1| type III secretion protein, hrpY/hrcU family [Desulfovibrio vulgaris str. Hildenborough] gi|311235485|gb|ADP88338.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris RCH1] Length = 346 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 167/345 (48%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P+ K++ +A +G+ S++ ++LA Y F S+ + + Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMRH 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 E + + + H +A +V+P + L MM L Q + P + Sbjct: 63 MAMPFDEALPLLGTAVVH---AAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +S + K+++S+ N V +K+ +K+ ++G + ++++ + + +L Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLKVL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +++M + + LD + Q+ + M+K E+K E K+ G+P IK ++K Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +A +I+TNPTH+A+AL Y + PV++AKG+ L+A++M +IA Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E IP+ + LARSLF + N+ IP VA+++ + + Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSLQ 344 >gi|145597135|ref|YP_001154599.1| type III secretion protein [Yersinia pestis Pestoides F] gi|145212903|gb|ABP42309.1| type III secretion protein [Yersinia pestis Pestoides F] Length = 354 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 177/348 (50%), Gaps = 3/348 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KKI DA +G S E + I+A L+ + + L Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSNEVVSTALIVALSAMLMGLSDYYFEHFSKLM---L 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A Q L + +++ ++ L L P L + + I S+++Q +++ +KP Sbjct: 59 IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG KRI+SI +LV F+KS +K++L+ +I I + N T+L + I Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +R+++++ + +++ D + Y+Q+ +LKMSK EIK E K+ G+P IK+++ Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M E R+++++ NPTH A+ + Y + E P++ K + + +RKI Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A E +PI + LAR+L+ ++ IP +A A+++ + + I Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346 >gi|327484648|gb|AEA79055.1| Flagellar biosynthesis protein FlhB [Vibrio cholerae LMA3894-4] Length = 359 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 1/334 (0%) Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79 + A +G S+E + S ++ + L++F + + L ++ ++ D+ Sbjct: 2 QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFE-LSREEIFDLGK 60 Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139 + ++ ++ ++ L + + + P +++ G+KR+ Sbjct: 61 LFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSAEAAMPKLSKMNPLSGLKRM 120 Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199 + + + V +KS +K++LV + + + + ++HA + +++I Sbjct: 121 FGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLLI 180 Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM 259 + + +DI + Q +LKM+KQE+KDE K + G P +K R + + R + +MM Sbjct: 181 SCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMM 240 Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 A +A +IITNP H+++ALRY Q + APV++AKG + +A K+R+IA E++I I P Sbjct: 241 AALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAPP 300 Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L+ + IP + AVAQ++ ++ K Sbjct: 301 LARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334 >gi|83646009|ref|YP_434444.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC 2396] gi|83634052|gb|ABC30019.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC 2396] Length = 345 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 172/342 (50%), Gaps = 5/342 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ DA +G S+E + ++A L YS+ L L+ Sbjct: 3 EKTEKPTPKKLLDARKKGQVAHSKELVSTAMMIAMYGLLF----ASGYSLVEALQSLIDL 58 Query: 69 ATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + +L + + +++P +LL ++ + S + P+ + VK Sbjct: 59 PARFYGQPFGEALQAVLNGVFEKSLDILLPFILLVIVTAVVSNVGHVGPLFAMESVKFDL 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K++ EG+K+++S+ +L+ +KS VKI+ + +I +T N + I+ Sbjct: 119 KKIDPVEGVKKLFSVRSLMELLKSIVKILFLSILIYWVITANLNDIRKLPHCGSDCIMPF 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + ++ ++ ++ + VLD + H+ +L+M+K E+K E K + GNP + ++K Sbjct: 179 IGHLMLQLAMVSMVAFVIVAVLDFLYQKHEHQKQLRMTKDEVKREYKDAEGNPEVIGQRK 238 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 I R + M+ +A++I+TNPTH A+ + Y + P ++ K +N A++++KIA Sbjct: 239 QIHREMLDGGMISQIKKASVIVTNPTHIAIGIYYDGDKRSLPTVILKAKNTTAQRVKKIA 298 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + +PI E LAR+L+ Q + + IP + VA+++ + Sbjct: 299 AKEGVPIMENIPLARALYAQAELENYIPSELIEPVAEVLKWV 340 >gi|124268261|ref|YP_001022265.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] gi|124261036|gb|ABM96030.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] Length = 387 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ S +K++ A +G P SR+ F+++ A + L +T Sbjct: 1 MADQ-GAQDRNLPASERKLKKAREDGQVPRSRDLGHFAAVAAGIALLAAMAPTATGWMTR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L L + + L L + + ++P + ++ + S L L Sbjct: 60 LLQSGLR-FDAGTLNGTASMSERLAELGVQFAWAMLPIGAVMVLAALASSLTVGGWNFTL 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+ R+ S + LV+ ++S V +++G + L++N F ++ Sbjct: 119 KAIEPKFSKLNPLTGLPRMLSADRLVDTVRSCVLALVIGLVGAFYLSQNVFQFTSTLTLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A V L+ +LL +A ++D+ Q +LKMS QE+K E K++ GN Sbjct: 179 LPTALAQAGNDVLYGLMFLLLALAVFALIDVPLQRFQHAKRLKMSHQEMKQEHKENEGNV 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + K+ R +M+ A +A +++ NPTHYA+AL+Y + AP +VAKG +L+A Sbjct: 239 EVKAKVKARMREMANRRMLAAVPKADLVVMNPTHYAVALKYEEGRGGAPRVVAKGADLMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A + +P+ + P LAR+L+ ++ IP Y AVAQ++ +Y + Sbjct: 299 MRIRDLAKDSKVPVLQAPVLARALYAHAELDREIPIALYTAVAQVLAYVYQLR 351 >gi|94986973|ref|YP_594906.1| flagellar biosynthesis protein FlhB [Lawsonia intracellularis PHE/MN1-00] gi|94731222|emb|CAJ54585.1| Flagellar biosynthesis pathway, component FlhB [Lawsonia intracellularis PHE/MN1-00] Length = 357 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 190/354 (53%), Gaps = 5/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ + KTE + K+ ++A +EG+ P S E + + A ++ L + + Sbjct: 1 MSDDPS---KTEKATPKRRQEARSEGSVPKSEEVTKALTTAAGMLGLAIYSGVMGRHFET 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + ++ + L +++ + L++P LL + S +Q + Sbjct: 58 IFYYIFTESFRFEV-TAQSVYALFIYVAQEIAILLMPILLFIAVTAWISLRVQVGALWTT 116 Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 K + + ++ +G+K ++ S LV ++S V++I++G + + + + L A Sbjct: 117 KVFKFKWSKFNIIKGLKGMFASQQTLVRLLRSLVQVIVIGIVPYMIIKGEFSNFLPLYYA 176 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P + + T +++ L+ + + V D+ ++ + + LKM+KQEIKDE KQ G+ Sbjct: 177 SPSGVADYMLNTGIVLVLYTLIPMTIIAVADLVYNRYSYEENLKMTKQEIKDESKQQEGD 236 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 PI+K +Q+ + ++MM+ +A +++TNP H A+ALRY E AP+++A G + + Sbjct: 237 PIVKQKQRQKMMQMMTNRMMQDVPKADVVVTNPKHIAVALRYNALEAPAPLVLAIGVDRV 296 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K+++IA E+NIPI E LAR+L+K V + IP YKAVA ++ ++ K Sbjct: 297 AEKIKEIARENNIPIRENVPLARALYKAVGVGEMIPEELYKAVAAILASVWRLK 350 >gi|296121646|ref|YP_003629424.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM 3776] gi|296013986|gb|ADG67225.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM 3776] Length = 360 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 177/351 (50%), Gaps = 2/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ D KTE P+ ++ +A +GN S++ ++++ +L++ + + Sbjct: 1 MAEDESGD-KTEDPTERRRSEAREQGNVVKSQDL-TAAALMLGSAGVLWWHGRNVAEYMA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L SA D + +V L + V P L+L + I L+Q + + Sbjct: 59 RLMRNSLSAAPWTTFDQNDLVSLAWAHLGESGWQVAPLLILLALAAIAINLLQVGFLFSP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P ++R++ GI+R++SI ++ + K+ L+G++ T + + Sbjct: 119 EVLQPKWERINPLSGIQRLFSITSVARLGANLAKLALLGSVATWFVYDGLHRFAALAHQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A + ++ + L I + D + + ++ LKMSKQEI+DE K+ G+P Sbjct: 179 LTVVAVVAGSELISLIFWMALAIFVAALADFAFQWWKYEQDLKMSKQEIRDEYKEMDGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +I+ R++ R + + +++ A ++ITNPT A+A++Y AP++VAKG +A Sbjct: 239 LIRMRRREAHRKLTQGRELQSVKTADVVITNPTEIAIAIKYDVATMPAPIVVAKGAGELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R++A E+ +PI E +AR+L+K + IP Y A+++ +Y Sbjct: 299 AQIRRLAAENGVPIIERKPVARALYKLTRVGDPIPSDLYAVFAEILAYVYK 349 >gi|120586865|ref|YP_961210.1| YscD family type III secretion protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564279|gb|ABM30022.1| type III secretion protein, YscU/HrpY family [Desulfovibrio vulgaris DP4] Length = 346 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 167/345 (48%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P+ K++ +A +G+ S++ ++LA Y F S+ + + Sbjct: 3 DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMRH 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 E + + + H +A +V+P + L MM L Q + P + Sbjct: 63 MAMPFDEALPLLGTAVVH---AAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +S + K+++S+ N V +K+ +K+ ++G + ++++ + + +L Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFAIPDGDIGLLLKVL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +++M + + LD + Q+ + M+K E+K E K+ G+P IK ++K Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +A +I+TNPTH+A+AL Y + PV++AKG+ L+A++M +IA Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E IP+ + LARSLF + N+ IP VA+++ + + Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSLQ 344 >gi|114765217|ref|ZP_01444349.1| flagellar biosynthesis protein B [Pelagibaca bermudensis HTCC2601] gi|114542352|gb|EAU45380.1| flagellar biosynthesis protein B [Roseovarius sp. HTCC2601] Length = 375 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 184/358 (51%), Gaps = 5/358 (1%) Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M++ D DNKTE P+ +K+ A +G+ S+EA ++L+ F + Sbjct: 1 MADQDEDKDNKTEEPTERKLRKAREKGDVASSKEAGNVMAVLSLFAITAFVLPSVSAPLA 60 Query: 60 SDLHVLLASATQR----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 +L SA Q L + + + + L+ P + L ++ + +Q Sbjct: 61 GVFRNVLESAGQVHVGTDLSGLRDLGAVSWKVLRGVGILLGPLMALMVIGALAGVALQGE 120 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V+ +KP + ++S G KR++S+ V F KS K++LVG I + + Sbjct: 121 VVVASERLKPKWSKISPISGFKRLFSLAAFVEFFKSVTKVLLVGVIAGWVVLNAVGQIWQ 180 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 P + ++L++ L ++ + V DI W K +MS +EIKDE+K+ Sbjct: 181 TQGLVPEMVTDFIRAEAARMLLITLALVSVIAVADILWKRFDHRRKQRMSMKEIKDEVKE 240 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 + G+P+I++++ +I R R R ++ +A RAT+++TNPTH+A+AL+Y + APV VAKG Sbjct: 241 TEGDPLIRSKRMNIRRERARQRLAQAVPRATVVLTNPTHFAVALKYENGVDMAPVCVAKG 300 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +L+A ++R++A E+ IP+ E LAR+L ++ IP ++AVA +I I + Sbjct: 301 ADLLAARIRELAKENEIPMVENRPLARALHDVAELDRPIPVEHWEAVAAIIGYIMDLE 358 >gi|307293817|ref|ZP_07573661.1| type III secretion exporter [Sphingobium chlorophenolicum L-1] gi|306879968|gb|EFN11185.1| type III secretion exporter [Sphingobium chlorophenolicum L-1] Length = 379 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 169/353 (47%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ KTE P++KK++DA +G+ SR+ + ++A + ++ SV Sbjct: 1 MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVTGP----SVVR 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSL--SASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L +L A + + EDI + +L + V +L ++ I + Sbjct: 57 SLSDMLTEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPALLGSLGF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 P +++ G+KR++ + L+ +KS K+ L+G I + + ++ Sbjct: 117 RPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSIAKVSLLGAIGVWMIWDRLTEIVGLGK 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + +++ + + +D+ Q +L MSKQEIKDE K+S G Sbjct: 177 SGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEIKDEHKESEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K + + +A + A++IITNPTH+A+ALRY ++ APV+VA+G + Sbjct: 237 SPELKGHIRRKQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVARGCDA 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA +R++A ++ + + + P LAR+++ + Y AVA ++ ++ Sbjct: 297 IAAAIRELADQNGVTVLQYPDLARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349 >gi|307718617|ref|YP_003874149.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM 6192] gi|306532342|gb|ADN01876.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM 6192] Length = 387 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 167/348 (47%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ KI A EG + E +L LI L S ++ S Sbjct: 32 EDEGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTF 91 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 +S + + +H +L +P ++ + G+ ++Q + + + P Sbjct: 92 FSSISSPE---PTHTGRFFVLFLQFFLKLTLPFFVVALCAGVAGNVLQVGFLFTVKPITP 148 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +R+ + KR ++S L N K+ +K+ +G + +++ +++ + Sbjct: 149 DLQRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRVPLL 208 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + V ++L + ++++D + Q LKMS++E+K+E K G+P++ Sbjct: 209 QGIRFLGALVFRILFEATVVFLAISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R + R + M+ A ++ITNPTHYA+AL Y + +AP +VAKG + +A + Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 MR IA EH +P+ E LAR+L+++V + IP +Y VA ++ K+Y Sbjct: 329 MRAIAREHGVPLVENRPLARALYQEVEVGDTIPEQYYAVVATILAKVY 376 >gi|90577372|ref|ZP_01233183.1| flagellar biosynthetic protein [Vibrio angustum S14] gi|90440458|gb|EAS65638.1| flagellar biosynthetic protein [Vibrio angustum S14] Length = 375 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ A D KTE + +KI A +G P +++ + + +A +++ F I+ + Sbjct: 1 MSQSSAQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVFFYFQI-DAIWQALN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L + L +L++P L ++ I S L+ + Sbjct: 59 GVFKLNMTISHDGLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWLFYP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L + Sbjct: 119 AGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDANLSRLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++++ + + ++DI + + +LKM+KQE+K+E K + GNP Sbjct: 179 LKQGVSLILTILFHGILLMGVALLLFGLIDIPYQKWEHAKELKMTKQELKEEFKSNEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I + R K+ +A +A ++I NPTHYA+A++Y T ++AP +VAKG + A Sbjct: 239 EIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAPFVVAKGIDEAA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IA +H++ I P L R+++ I AIP Y AVA ++ + K Sbjct: 299 MHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351 >gi|315638787|ref|ZP_07893959.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis JV21] gi|315481005|gb|EFU71637.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis JV21] Length = 356 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LLF V + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVAN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D+ I ++ ++ P +L M+ GI ++Q + Sbjct: 59 LYRYYQSFIGVE--FDLRIIQAIMMKSIFEVLIILAPIVLSIMVAGIIGNVMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ L+ +K +K+ +V TI I L + + + Sbjct: 117 KPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVGVVFTIAFIVLLQFVKELPKVELYS 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + ++++ + +LD+ Q++ LKMSKQEIKDE KQ G+P Sbjct: 177 LAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+ALRY T+ +AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AY+HN+ ++E P LAR L+K ++ IP +KAV+++ +Y Sbjct: 297 LRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKFVYQ 347 >gi|218887105|ref|YP_002436426.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758059|gb|ACL08958.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 356 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 181/354 (51%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D KTE + K+ A N+GN P S+E + +ILA + LL + + + Sbjct: 1 MAQRDPS--KTEKATPKRRNKARNKGNVPKSQELTKALTILAGSVGLLSYIDFLAKDMQT 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L +A + + +++ LL L+ + +++P +L +Q + Sbjct: 59 LFRHFLGNAFGF-IPNQQNVIKLLMWLAGELAAMLLPIMLFIGFTAWLVLRLQVGKLWTT 117 Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 K ++ R ++ +KR++ S + KS ++ + +G I + L A Sbjct: 118 EVFKFNWSRFNILAALKRMFVSPETFMRLGKSLLQALFIGVAPYIIIRREMHNFLPLYYA 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + I + T ++ L+ + + + D ++ + LKM+K E KDE KQ+ G+ Sbjct: 178 DAQGISAYMLKTGWDMVRYALVPMFIIAIADFWYTRWSYEENLKMTKDETKDERKQAEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+++ +Q+ + +M++ +A ++ITNPTH+A+ALRY TE AP+++AKG + + Sbjct: 238 PVVRAQQRRKMMQMMAKRMLQDVPKADVVITNPTHFAIALRYDATEAPAPIVLAKGADNL 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K++++A EH +PI E LA++L+K V + IP ++AVA ++ ++ K Sbjct: 298 AQKIKEVAREHGVPIRENKPLAQALYKAVEVGDMIPAELFQAVATVLASLWKFK 351 >gi|163744325|ref|ZP_02151685.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45] gi|161381143|gb|EDQ05552.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45] Length = 372 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 109/357 (30%), Positives = 192/357 (53%), Gaps = 5/357 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D +KTE P+ KK+ DA +G+ P SRE + A L+ L+F + + Sbjct: 1 MSDEDKS-SKTEEPTEKKLRDARKKGDVPQSRETGTAMLVFALLMILVFVLPSSVGGIVE 59 Query: 61 DLHVLLASATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L L A + +L L + ++P + + ++ + LIQ Sbjct: 60 ALQAPLLEAGVTAIGTGGTGLVEAGSVLKSLGFTLGLAMMPVVGIMVLAALFGVLIQGET 119 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V++ +KP +++ G KR++S V F K+ VK++++G I ++ + ++ Sbjct: 120 VVSAERIKPKISKLNPLSGFKRLFSAEAFVEFAKNTVKVLVIGFITVWAVRDIAQSLGQT 179 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 + P ++L VR + ++ F+ + + DI W QW K MS +EI+DE K S Sbjct: 180 QAFVPETLLAATLQKVRWIFLVTATFLVPIAIADIIWKRAQWKKKQMMSLKEIRDEHKDS 239 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P IK R+ + R+R R ++ +A A++++TNPTHYA+AL+Y Q +D PV VAKG Sbjct: 240 EGDPQIKGRRAELRRARARQRIAQAIPGASVVLTNPTHYAVALKYEQGVDDVPVCVAKGA 299 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++A+++R++A EH+IP+ E LAR+L V ++ IP ++AVA++I + + Sbjct: 300 DVMAQRIRELAKEHDIPMIENRPLARALHAAVEVDDRIPMEHWQAVAEIIGFVMDLR 356 >gi|319898624|ref|YP_004158717.1| flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73] gi|319402588|emb|CBI76133.1| Flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73] Length = 356 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 199/354 (56%), Gaps = 1/354 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS E +++TE P+ KI +GN P SRE +F+S+++ + +F P I +T Sbjct: 1 MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICIFISFPAISKLT 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L ++ I L+ + S + P L+L + I + +Q +P Sbjct: 61 FFLVQWFERPESWRINTAEDIKHLIYLVGGSVGLALAPILILIPLLNIVASAVQNVPRFV 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P + RVS G KRIYS LV F+KS K+I V I+ + ++ ++ + Sbjct: 121 IERIRPQWSRVSPANGFKRIYSKAGLVEFLKSLTKLIGVSLIVYMIFFKSNTIFINALLT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + + + + L LD+ WS W +L+M+KQEIK+E K GN Sbjct: 181 DASALPEYIRKELISLSLSFTAAVVALVGLDLAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K R +S+AR R R +M+ AT+I+TNPTH+++ALRY + APV++AKGQ+++ Sbjct: 241 PMVKARMRSLARDRTRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGQDIL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +R+IA +++IPIFE +LAR+L+KQV I+ IP Y++VA LI I ++K Sbjct: 301 ALHIREIAIKNDIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354 >gi|57506049|ref|ZP_00371972.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis RM3195] gi|57015657|gb|EAL52448.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis RM3195] Length = 356 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE P+SKKIEDA EGN P S++A+ +++ + LLF V + Sbjct: 1 MAGED--QEKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVAN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ I ++ ++ P +L M+ GI ++Q + Sbjct: 59 LYRYYQNFIGVE--FDLRIIQAIMMKSIFEVLIILAPIVLSIMVAGIIGNVMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+ +++ +G+K ++S+ L+ +K +K+ +V TI I L + + + Sbjct: 117 KPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVSVVFTIAFIVLLQFVKELPKVELYS 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + ++++ + +LD+ Q++ LKMSKQEIKDE KQ G+P Sbjct: 177 LAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R +M++ + A ++ITNPTHYA+ALRY T+ +AP +VAKG + +A Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENAPRVVAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++AY+HN+ ++E P LAR L+K ++ IP +KAV+++ +Y Sbjct: 297 LRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKFVYQ 347 >gi|238916767|ref|YP_002930284.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC 27750] gi|238872127|gb|ACR71837.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC 27750] Length = 372 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 173/355 (48%), Gaps = 5/355 (1%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +++ KTE +SKK++D EG S+E S++ I + + + Sbjct: 14 AKDGPGGEKTEPATSKKLDDVRKEGQVAKSKELITAVSLMTLFIIIKIYVGNIGTKLIDS 73 Query: 62 LHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVI----PGLLLFMMFGIGSYLIQRIP 116 + + + + V + ++ A +++ P L++ ++ I +Q+ Sbjct: 74 FKTIYGLMGKVIDDSSKGVTVNMAASIASQAFTIILNAVIPILIIAVIIAILGNALQQRW 133 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++ + P +++ G KR++S+ L +K+ + ++ ++ + +N +L F Sbjct: 134 MVTAKPLAPKASKINPLNGFKRLFSVRQLFELLKAIAMMSIIVIMVYNCVKKNMNILLTF 193 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ L + + I I + +D+ + H++ + M+KQE+KDE K + Sbjct: 194 YDVTLYTALATVGNIIINLGIQISAVFLVVGFVDLLYQRHKFKNDNMMTKQEVKDEFKNA 253 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P +K + + + R +MM+ A ++ITNPTH+A+AL+Y E APV++AKG Sbjct: 254 EGDPQVKGQIRRKMQEISRRRMMQQLPEADVVITNPTHFAVALKYEPDEGKAPVVIAKGA 313 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +A +++ A E+NI I E LAR L+ V I + IPP Y AVA+++ + Sbjct: 314 DYLAFQIKDRAKEYNIAIVENKPLARILYHNVDIGTEIPPELYYAVAEILASVLR 368 >gi|298528402|ref|ZP_07015806.1| type III secretion exporter [Desulfonatronospira thiodismutans ASO3-1] gi|298512054|gb|EFI35956.1| type III secretion exporter [Desulfonatronospira thiodismutans ASO3-1] Length = 359 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 101/354 (28%), Positives = 182/354 (51%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M + D KTE + K+ + A +GN P S+E S++A ++ L FF + Sbjct: 1 MPQKDPS--KTEDATPKRRKKAREQGNVPKSQEMPKIISLIAGILALRLFFPHIRDTYME 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A +L + + L + + +++P +L+ I + +Q + Sbjct: 59 MTEWFMDQAFHYQL-NPESLYHLAVFSIQNIASMLLPFMLIVFFVTIVAIYLQVGFLWTF 117 Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +KP K ++ EG+K+ + +N LV +K+ V T I +T + L Sbjct: 118 KPLKPKMKIFNVVEGLKKKFLDLNTLVRLVKNVGIASAVATAPYIIITSEFENFLPLFYE 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P I+ + T K+ ++ ++ + + + D+ ++ + LKM+K E+KDE KQ+ GN Sbjct: 178 DPPFIVAYILNTAFKMAMLAMIPLLIIAIADVAYTRWDYEQNLKMTKDEVKDERKQAEGN 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K Q+ +S + +M + +A ++ITNPTH A+A++Y AP+++AKG N Sbjct: 238 PEVKKEQRKKMQSTTQQRMRQEVPKADVVITNPTHLAVAIKYDPVLAPAPMVLAKGANFR 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K+++IA E+NIPI E LA++L+K V IP YKAVA ++ ++Y K Sbjct: 298 AEKIKEIARENNIPIRENKPLAQALYKNVQEGETIPEDMYKAVASILAQLYKFK 351 >gi|294013056|ref|YP_003546516.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S] gi|292676386|dbj|BAI97904.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S] Length = 392 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 170/353 (48%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E++ KTE P++KK++DA +G+ SR+ + ++A + ++ S+ Sbjct: 1 MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVTGP----SMVE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSL--SASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L +L A + + EDI + +L + V +L ++ I + Sbjct: 57 SLSDMLIEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPAMLGSLGF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 P +++ G+KR++ + L+ +KS K+ L+G I +++ ++ Sbjct: 117 RPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSVAKVSLLGAIGVWMISDRLTEIVGLGK 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + +++ + + +D+ Q +L MSKQEIKDE K+S G Sbjct: 177 SGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEIKDEHKESEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K + + +A + A++IITNPTH+A+ALRY ++ APV+VA+G + Sbjct: 237 SPELKGHIRRKQYEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVARGCDA 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IA +R++A ++ + + + P LAR+++ + Y AVA ++ ++ Sbjct: 297 IAAAIRELADQNGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349 >gi|238752885|ref|ZP_04614350.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380] gi|238708924|gb|EEQ01177.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380] Length = 377 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + K+E P++ K+ A +G+ P S++ ++ + ++A LI L F + Sbjct: 1 MS--ASTGEKSEKPTTGKLTKARKKGDIPRSKDVTMAAGLVASLITLTLFMPYYKELIKE 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A++ ++D + + LL + +I L+ + I + LI Sbjct: 59 SFLAVSRMASR--MDDPTALEQLLRINLFIFGKFLI-TLIPIPLASIVATLIPGGWNFTP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K++S GIK+I+S +N +K K +V + I + + +L + Sbjct: 116 VKLIPDLKKLSPIAGIKKIFSASNGTEVLKMLAKCSIVLYTLYIMVNNSLADLLRLQALP 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + F +L+ + I V+DI S + + K+KM+KQE+K E K + GNP Sbjct: 176 LLEAITEGFSLYHGILVYFITIIVIFAVIDIPLSTYLFKKKMKMTKQEVKQEHKSNDGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + R ++ ++ A +IITNPTH+++AL+Y + AP +VAKG++ IA Sbjct: 236 EIKARVRQLQRQFSMGQINKSVPNADVIITNPTHFSVALKYSPEKASAPYIVAKGKDDIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R +A ++NI I E P LAR+++ +N +P Y+A+AQ++ + K Sbjct: 296 LYIRSVAEKNNIEIVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVLTYVMQVK 348 >gi|170737009|ref|YP_001778269.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] gi|169819197|gb|ACA93779.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] Length = 379 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D KTE + +K+ A EG SR+ IL L ++ + + Sbjct: 1 MSEQQTGD-KTEKATPQKLRKARMEGQVARSRDIGTCVGILVALKLIVVLTPAWLVELKH 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A + + + L L +++ P + I + LI +++ Sbjct: 60 IFALSFADLSGDDRLG-NAVSMLFPAAVLLMCKMLAPLAAVPAGI-IVASLIPGGWIISH 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ P R++ G+KR+ S + + F + +K +++ + I N + A Sbjct: 118 KNIMPKLNRLNPLSGLKRLVSGKHYMQFGTTVLKALVLMATLFIVCRSNLSGFIRLQGAP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + + I ++DI + +MSK++IK+E+KQS G P Sbjct: 178 LADALTGGANLFLSSAVTLSCIITVFALVDIPVQQIIFKRGQRMSKRDIKEEMKQSEGRP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+R + I R R + + A +++ NPTHYA+AL+Y T AP +VAKG + +A Sbjct: 238 EVKSRIRQIQRQLARQGIRKTVPTADLVVMNPTHYAVALKYDVTRAQAPYVVAKGVDEVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R +A HN+ + E P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 298 LFIRDVARGHNVEVLELPPLARAIYHTSQVNQQIPAELYRAVAQVLSYVLQIK 350 >gi|289678968|ref|ZP_06499858.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. syringae FF5] Length = 329 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 171/330 (51%), Gaps = 1/330 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN+ +KTE P+ KK++D+ +G S+E + +L LL F S I + S Sbjct: 1 MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + ++ L D S++ L + A +V+P L+ ++ + ++ + Sbjct: 60 ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F R++ G+KR++S + LV +KSF K ++ + + L ++ Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H+ V + + + D+ + ++ + KL M+KQE++DE K S G+P Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R + +MM + A +IITNPTH+A+AL+Y + AP+L+AKG +L+A Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 K+R+I + I I E +LARS++ + Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTEL 329 >gi|330976011|gb|EGH76077.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 355 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 91/329 (27%), Positives = 167/329 (50%), Gaps = 1/329 (0%) Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84 +G S+E + +L LL F S I + S+L + ++ L D S++ L Sbjct: 2 DGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMSELMRDNFTISRETLMDQSYMGKAL 60 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144 + A +V+P L+ ++ + ++ + + P F R++ G+KR++S + Sbjct: 61 LSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFATKSLMPKFSRMNPAAGLKRMFSPHA 120 Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 LV +KSF K ++ + + L ++ + H+ V + + Sbjct: 121 LVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEPLEQAMIHSLVVVGWSSFWMACGLI 180 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264 + D+ + ++ + KL M+KQE++DE K S G+P +K R + + R + +MM + Sbjct: 181 FIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQRIRQLQREMSQRRMMASVPE 240 Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 A +IITNPTH+A+AL+Y + AP+L+AKG +L+A K+R+I + I I E +LARS+ Sbjct: 241 ADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIREIGAHNEILILESAALARSI 300 Query: 325 FKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + ++ IP Y AVAQ++ +Y + Sbjct: 301 YYSTELDQEIPAGLYLAVAQVLAYVYQIR 329 >gi|30524900|gb|AAP34345.1|AF499777_13 HrcU [Xanthomonas axonopodis pv. glycines] Length = 357 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 62 DFP--ENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++ Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341 >gi|322832554|ref|YP_004212581.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602] gi|321167755|gb|ADW73454.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602] Length = 384 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ K+EAP++ ++E A EG P SRE + + L L + Sbjct: 1 MAE-ESDLEKSEAPTAHRLEKAREEGQIPRSRELTSILMLGGGLTLLWMSGESMARQLGV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D ++ + L A ++P + ++ + + L+ + + Sbjct: 60 MISQGLK-FDHGMVSDDRQVLQQMATLLGRAVWALLPVIGGLILIALAAPLLLGGLMFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F R+ G+KR++S L +K+ +K +LVGT+ + L + M+ ++ Sbjct: 119 KSFEFKFSRMDPIAGLKRLFSGQVLAELLKAVLKALLVGTVAGLYLWHKWPDMMRLMAQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A V +M++L + + D+ W KL+MSKQ+I+DE K G+P Sbjct: 179 TIPALGEALNMVVFCGLMVVLGLTPMVGFDVFWQIWSNLKKLRMSKQDIRDEHKSQEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + + AP ++AKG +A Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPKADVIVTNPTHYAVALQYSENKMSAPKVLAKGAGDVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++ EH IP+ E P LAR+L++ I IP Y AVA+++ +Y K Sbjct: 299 LRIRELGVEHKIPMLEAPPLARALYRHSDIGQQIPATLYAAVAEVLAWVYQLK 351 >gi|312884814|ref|ZP_07744506.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367466|gb|EFP95026.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 375 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ + D KTE S++KI+ A +EG P +++ + LA LIY S + Sbjct: 1 MSESTSQD-KTEQASAQKIKKARSEGQIPRAKDFTAACIFLAVLIYFSSQMSLIWEKIAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + T++ L D + + L IP ++ + + S LI + Sbjct: 60 TFEYNMR-LTKQDLADPYQTIEHFGNSLGILIELFIPMFIVILSIAMASSLILGGWLFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ P ++ +GIKRI S+ ++V +KS +K+ ++ TI+ + L + +L Sbjct: 119 ANLMPKMSKLDPIKGIKRIVSLRSVVELVKSALKVTVIFTILYLYLNNHLQPLLGMQRLG 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + LI++ + + ++DI + + +LKM+KQE+K+E K + G P Sbjct: 179 IEQGSIQIMNILFDGLILMGIALLVFGLIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTHYA+A++Y + +DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFSRRKVDKMVPTADVVITNPTHYAVAIKYDPSISDAPFVVAKGIDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++A ++ + I P L RS++ I AIP Y AVA ++ + + Sbjct: 299 MHIQRVARDNQVEIIHSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVMQIQ 351 >gi|154249642|ref|YP_001410467.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum Rt17-B1] gi|154153578|gb|ABS60810.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum Rt17-B1] Length = 384 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 178/348 (51%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +KTE + +K + A EG PISRE L + + I ++ + + Sbjct: 33 ADPDKTEKATPRKRQKAREEGQVPISRELVSGLGFLFASMVFILLGKRLIDALITSTQSV 92 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + + A +V +L +F + L+Q + +K Sbjct: 93 FE-ISDNDIRTLEDFIIYASQTFRPAFLVVAILVLGTALFSLIIGLLQTRFLFTFKPLKM 151 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ G+KR++S+ +L +K+ +K+ ++G + + N+ +L + ++ Sbjct: 152 DLNRLNPITGLKRMFSLRSLFELLKAILKLAIIGFVGYSVIKGNFDKVLLTVDSSLIDGT 211 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + +++I + + +++ D +S +++ +KM+KQEIK+E K+ GNP IK R Sbjct: 212 LIMWGVLSELIIKCGIALIVVSIADYYYSRYEYEQNIKMTKQEIKEEFKEIEGNPEIKRR 271 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+ I H+MM+ +A+++ITNPTH+A AL+Y E+ AP LVAKG + +A ++ Sbjct: 272 QRQIMMQFAMHRMMQEVPKASVVITNPTHFACALKYDPEEDFAPKLVAKGVDKVALRIID 331 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++++PI P LAR ++ + IP YKAVA+++ +Y + Sbjct: 332 IARKNDVPIVRNPRLAREIYYSTELGDIIPEKLYKAVAEVLAYVYTLR 379 >gi|327478779|gb|AEA82089.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166] Length = 380 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S +K++ + ++G S++ + S+LA L+ L + + Sbjct: 1 MSEQNSSQEKTEEASEQKLKKSRDDGQVTRSKDVATTVSLLATLLLLKLSAELFLDGMQQ 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + Q ++ V L +L + S L+ L ++ L+ V Sbjct: 61 SFSYSYINFQQSEIGIDDLQVILTHNLLVFISVLLPLLLTPILVIAFA--LVPGGWVFAS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ G+ R+ N KS +KI + I L ++ + Sbjct: 119 KNFAPKFSKLNPITGLGRMVGAQNWSELAKSLLKISALLGIAAWQLYYAAPRLVALQRTD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + AF + I +LL + +DI + K++M+KQE K+E K G P Sbjct: 179 IFNAIGGAFSLTFDLAISLLLVFVLFSFIDIPLQRFFFLKKMRMTKQERKEEHKNQEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R K + R+ + ++ + A ++I NPTHYA+ALRY + + P ++A+G + +A Sbjct: 239 EVKARIKQLQRALAQRQIAKVIKDADVVIVNPTHYAVALRYDPKKAETPFVIARGVDEMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +RK+A + + E P LAR+++ +N IP Y AVA ++ I K Sbjct: 299 LYIRKMAQANGREVVELPPLARAIYYSTQVNQQIPAPLYTAVAHVLTYILQLK 351 >gi|51597656|ref|YP_071847.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 32953] gi|170022952|ref|YP_001719457.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186896790|ref|YP_001873902.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis PB1/+] gi|51590938|emb|CAH22594.1| Putative flagellar assembly/export protein, flhB [Yersinia pseudotuberculosis IP 32953] gi|169749486|gb|ACA67004.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis YPIII] gi|186699816|gb|ACC90445.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis PB1/+] Length = 377 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 97/340 (28%), Positives = 172/340 (50%), Gaps = 3/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P++ K+ A +G+ P S++ ++ + ++ I L F P ++ S V +A + Sbjct: 12 PTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKALVSQSFVSVAQLASQL 70 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + + FLL +L + A L L+ +F + + LI + P K++S Sbjct: 71 DDQGALEQFLLANLFIFAKFLA--TLIPIPLFSMLATLIPGGWNFTPVKLIPDLKKLSPL 128 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 GIKRI+S +N +K K +V + + + + +L + + F Sbjct: 129 AGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEEAITQGFAQYH 188 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 +L+ + + +DI S+H + K+KM+KQE+K E K + GNP IK+R + + R Sbjct: 189 HILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQY 248 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 ++ + A +IITNPTH+++AL+Y + AP +VAKG++ IA +R IA +H I Sbjct: 249 AIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIALYIRSIAQKHKIE 308 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I E P LAR+++ +N IP Y+A+AQ++ + K Sbjct: 309 IVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348 >gi|152990384|ref|YP_001356106.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2] gi|151422245|dbj|BAF69749.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2] Length = 351 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 175/353 (49%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + KTE + ++ E A EG S++ + ++++ + L + + Sbjct: 1 MAKDPS---KTEKATPRRREKAREEGQVAKSQDIPISATLIVVFMLFLAYIPFAYKKLYE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A + I++L+ L IP L ++ G+ S + Q +L Sbjct: 58 LFMFIFADPLYNIPQYNYSIIYLVMEF---MGYLTIPFFLALLITGVVSNIAQIGFLLTF 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+KR++S+ L +K+ +K+I + + + + + Sbjct: 115 KSMVPKLEKIDPIAGLKRLFSLKTLFELVKNILKLIAATIVSYFLVQFLLRDVFQYATTT 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P+ +++ + + +D + ++ +KMSK E+K+E KQ GNP Sbjct: 175 PYKDAVLLVKYTLIMILGFAILSIPIAAIDFFFRKFEFEENIKMSKHEVKEEHKQMEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ + R +++M +A ++ITNP H+A+AL+Y + + AP +VAKG++ +A Sbjct: 235 QVKSEIRKRMREMSMNRIMAEVPKADVVITNPVHFAVALKYEKEKMHAPKVVAKGKDYLA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA EH +PI E P LAR++++ ++ IP YKA+A++ K++ ++ Sbjct: 295 LKIKEIAKEHGVPIEENPPLARAIYQACDVDEYIPENLYKAIAKIFAKVFKRQ 347 >gi|319409199|emb|CBI82843.1| Flagellar biosynthetic protein flhB [Bartonella schoenbuchensis R1] Length = 356 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 204/355 (57%), Gaps = 1/355 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS E ++KTE P+ KI +GN P SRE +FSS+L+ + +F P I ++ Sbjct: 1 MSDEKPDKESKTEEPTEHKIHKEEEKGNLPFSRELPIFSSLLSFSVISIFIAFPAISQLS 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L ++ + L+ + + + P L++ + GI + IQ +P + Sbjct: 61 HFLLQWLERPESWRINTAEDVKHLIYLVGGNVGLALAPILIIIPLIGISASAIQHVPRII 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P + RVSL G +RI+S LV F+KS K+I V I+ I +N ++ + Sbjct: 121 MERIRPQWSRVSLSNGFERIFSKAGLVEFLKSLTKLIGVSIIVYIMFFKNNTIFINALLT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + + + ++ +A + D+ WS W KL+MSKQEIK+E K GN Sbjct: 181 DAPALPEYIREKLVGLSLSFIVAVAAIAGFDLAWSRFHWRQKLRMSKQEIKEEHKSLEGN 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK R +S+A R+R +M+ AT+I+ NPTH+++ALRY + APV+VAKGQ+++ Sbjct: 241 PMIKARMRSLAHDRMRLRMISNVPTATLIVANPTHFSVALRYKPPLDYAPVVVAKGQDIL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 A ++R+IA E++IP+ E LAR+L+KQV ++ IPP Y++VA LI I +KI Sbjct: 301 ALQIREIAVENDIPVIENVELARTLYKQVEVDQVIPPELYESVAALIRFINSQKI 355 >gi|5679184|gb|AAD46898.1|AF160974_1 HrcU homolog [Xanthomonas campestris pv. glycines] Length = 357 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L+ ++ G+ Q +L V P Sbjct: 62 DFP--ENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + ++ P I Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E+K+S G+P IK ++ Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y + P +VAKG + A ++R Sbjct: 240 KEFAKDMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L+ QV + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341 >gi|319944146|ref|ZP_08018424.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC 51599] gi|319742640|gb|EFV95049.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC 51599] Length = 384 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 169/353 (47%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + +++ S +++ A EGN P SR+ + + A + L + Sbjct: 1 MAE-TSKEDRQLPASEQRLRKAREEGNVPRSRDVAHLLVMGAGMGALALMGPSLADGMRR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A Q +L + + L H + LL I + I L++ Sbjct: 60 LMASTFAFDGQVRLYFLDALQPALAHFG-DLGWRTLAILLSVCAAAIAASTIPGGFNLSV 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + R+S G+KRI+S+ NLV F+K + L+G I + + + + Sbjct: 119 KALGVKISRISPASGLKRIFSLRNLVEFLKLSLLASLLGAIGSWYAMDRFPEFAALSHGS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + HA V L + +L + L + D+ + + + + L+M++ E K E ++S G+P Sbjct: 179 LAGSVSHAMALVVGGLGLSMLLLFALALFDVPFQWFRHRADLRMTRDEAKREHRESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + +S R R +M+ A A I++ NPTHYA+A+RY + AP +VAKG + +A Sbjct: 239 QLKGQIRSRQREAARRRMLSAVPSADIVVVNPTHYAVAIRYDEAAGGAPRVVAKGLDELA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA E +P+ P LAR+L+ V ++ IP Y AVAQ++ +Y K Sbjct: 299 MRIQAIARESGVPVLSAPPLARALYAHVELDQEIPQALYVAVAQVLVYVYQLK 351 >gi|157164760|ref|YP_001466322.1| flagellar biosynthesis protein FlhB [Campylobacter concisus 13826] gi|112800831|gb|EAT98175.1| flagellar biosynthetic protein FlhB [Campylobacter concisus 13826] Length = 357 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 189/350 (54%), Gaps = 4/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D KTE + KKIEDA +GN P S++ S F +++ + LL + V S Sbjct: 1 MAGED--QEKTEEATPKKIEDAKKDGNVPKSQDLSGFVTLVIAIGVLLAMLNFMKDQVIS 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L++ + + L + + ++ + A +++P + + GI + ++Q + Sbjct: 59 -LYIYYSKFIGQPL-TLPTVKMIVVNTFGRALLMILPVCICVAVAGIIANVMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F +++ +G+K ++S+ + +K VK+ +V + + + + + Sbjct: 117 KPITPNFGKINPLKGLKNLFSMKKAIESVKIVVKVSIVFGVGFYFFLQFIKELPHTLFFS 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++ ++L + + + D+ Q++ L+MSKQEIKDE KQ G+P Sbjct: 177 MFDQLAWLKEKLIILVSVMLFILFVIGLADLLIVRFQYFKDLRMSKQEIKDEYKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + +MM+ +A ++ITNPTHYA+A+RY ++ ++AP+++AKG + +A Sbjct: 237 QVKGRIRQAQMRAAKRRMMQNIPQADVVITNPTHYAVAIRYDKSRDEAPIILAKGVDFLA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++K+A E+ + I+E P LAR L++ ++ IP ++AVA+++ +Y Sbjct: 297 LQIKKVAVENGVQIYENPPLARELYRVCEVDDTIPAHLFRAVAEVLSFVY 346 >gi|315186370|gb|EFU20130.1| flagellar biosynthetic protein FlhB [Spirochaeta thermophila DSM 6578] Length = 387 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 166/348 (47%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ KI A EG + E +L LI L S ++ S Sbjct: 32 EDEGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTF 91 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 +S + + +H +L +P ++ + G+ ++Q + + + P Sbjct: 92 FSSISSPE---PTHTGRFFVLFLQFFLKLTLPFFVVALFAGVAGNVLQVGFLFTVKPITP 148 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 +R+ + KR ++S L N K+ +K+ +G + +++ +++ + Sbjct: 149 DLQRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRVPLL 208 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + V ++L + ++++D + Q LKMS++E+K+E K G+P++ Sbjct: 209 QGIRFLGALVFRILFEATVVFLAISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R + R + M+ A ++ITNPTHYA+AL Y + +AP +VAKG + +A + Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 MR IA EH +P+ E LAR+L++ V + IP +Y VA ++ K+Y Sbjct: 329 MRAIAREHGVPLVENRPLARALYQDVEVGDTIPEQYYAVVATILAKVY 376 >gi|126730129|ref|ZP_01745941.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37] gi|126709509|gb|EBA08563.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37] Length = 363 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 164/349 (46%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D K+ PS +K++ A +G P S + S L L+ + Sbjct: 1 MADQDEAAEKSHEPSQRKLDQARKKGEIPRSTDLLTAMSYLGMLVCGTAAGGYMLSQFAE 60 Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + LL + K + L + ++A V+P LL+ +F + + R Sbjct: 61 VMLPLLEQPDRIAKGFFGGNAAPLAGSVMVAAISPVLPLLLVPGVFVLLTLFATRGFTFA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P R++ EG K + L F KSFVK+ + ++ + L +++ + Sbjct: 121 GTKLQPKVSRINPIEGAKNKFGRRGLFEFFKSFVKLTIYSALLAVFLQHQLDSIVGTVFG 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P + + + L++++L + +D W + K +MS++E++DE+K S G+ Sbjct: 181 TPAEAILLMTDLILRFLLVVVLIAVVIGGIDAFWQRMEHIRKNRMSQKELRDEMKDSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK ++ A+ ++M+ A ++I NPTHYA+AL++ + APV VAKG + + Sbjct: 241 PHIKQHRRMRAQEMALNQMLPDVPDADVVIVNPTHYAIALKWSRMPGSAPVCVAKGTDHV 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A ++R++A + +PI +P AR+LF I I Y+ VA I Sbjct: 301 AARIREVATDAGVPIHSDPPTARALFATTRIGDEIATEHYRPVAAAIRF 349 >gi|253702491|ref|YP_003023680.1| flagellar biosynthesis protein FlhB [Geobacter sp. M21] gi|251777341|gb|ACT19922.1| flagellar biosynthetic protein FlhB [Geobacter sp. M21] Length = 353 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +KTE P+SKKIE+A N+ P SRE + S++ ++ L + ++ + Sbjct: 1 MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTLYASSGLFLKTMKT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + +L + ++ A ++ P +L+ ++ GI + Q ++ Sbjct: 60 SMQEIFGGLARPELTFAAVHTLMIKEFGYLAI-MLAPFILVGIVAGIAVEVTQGGLTVSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K R++ +G+ R+++ +++ KSF+K+ +VG + LTE ++ + + Sbjct: 119 EKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIIYLVDQD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I+ K+++ + L VLD+ + ++ LKM+KQE+KDE K G+P Sbjct: 179 LMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFIENLKMTKQEVKDEHKNMEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K +QK R +M + A +++TNPTHYA+AL+Y + + APV++ KG + +A Sbjct: 239 AVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAIALKYDRLQMAAPVVLFKGVDQMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ A EHN+ + E LAR L+ QV IP + AVA+++ +Y K Sbjct: 299 LQIKITAREHNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351 >gi|121596106|ref|YP_988002.1| type III secretion exporter [Acidovorax sp. JS42] gi|120608186|gb|ABM43926.1| type III secretion exporter [Acidovorax sp. JS42] Length = 390 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 1/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +K + +K++ A ++G A SR+ S + + + LL + + + Sbjct: 2 SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQ 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LA ++ H++ L ++ L + S + V + + Sbjct: 62 QLA-FNAATVQAPGHMLERLQTMAGVGLLASASFAALTGGAALLSAVGAGGWVFSFKPIT 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ G ++S L N K + ++ + + ++ M + Sbjct: 121 PQFNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSIEKMAALVLQPSPMS 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L H + ++LL + V+D+ + S+LKMS +E+K E K+S GNP +K Sbjct: 181 LRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 RQ+ AR + A +A ++ NPTHYA+AL+Y AP +V+KG +L+A K+R Sbjct: 241 RQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLLAFKIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++A H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 301 EVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349 >gi|222112261|ref|YP_002554525.1| type III secretion exporter [Acidovorax ebreus TPSY] gi|221731705|gb|ACM34525.1| type III secretion exporter [Acidovorax ebreus TPSY] Length = 390 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 1/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +K + +K++ A ++G A SR+ S + + + LL + + + Sbjct: 2 SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQ 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LA ++ H++ L ++ L + S + V + + Sbjct: 62 QLA-FNAATVQAPGHMLERLQTMAGVGLLASASFAALTGGAALLSAVGAGGWVFSFKPIT 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ G ++S L N K + ++ + + ++ M + Sbjct: 121 PQFNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSIEKMAALVLQPSPLS 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L H + ++LL + V+D+ + S+LKMS +E+K E K+S GNP +K Sbjct: 181 LRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 RQ+ AR + A +A ++ NPTHYA+AL+Y AP +V+KG +L+A K+R Sbjct: 241 RQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLLAFKIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++A H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 301 EVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349 >gi|254459117|ref|ZP_05072540.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD 1] gi|207084388|gb|EDZ61677.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD 1] Length = 349 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 177/352 (50%), Gaps = 6/352 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ KKIEDA EGN P S++ S ++ ++ L F P + + Sbjct: 1 MADD---AEKTEEPTPKKIEDARKEGNVPKSQDTSGVITLFVAILATLMLF-PYMSNHML 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L S L+ + I + + +++P + + G+ + L Q + Sbjct: 57 LLFKYYFSLIGTPLDKLFMIDIAIVTI-KEFLLIIMPLAIAVAISGVIAALAQFGFLFTT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P FK++ +G K ++S+ L+ +K K I + + + Sbjct: 116 KAIMPDFKKIDPIKGTKNLFSMKKLIESVKITFKSFTTLGIGFVFFFLYILELPTVALFS 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++LL I ++DI Q++ LKMSKQEIKDE+K G+P Sbjct: 176 LGEQLVWLKDKAIILAFVMLLIIFVFAMIDIVIVRKQYFDGLKMSKQEIKDEMKNMEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK + + I R +MM A +IITNPTHYA+AL+Y +++ AP +VAKG + IA Sbjct: 236 LIKGKIRQIQMQASRKRMMAEVPNADVIITNPTHYAVALKYEESK-RAPYVVAKGMDNIA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++++KIA E+N+ I + P LARSL+ V I+ IP + AVA+++ +Y Sbjct: 295 QQIKKIARENNVHIVQNPPLARSLYADVEIDKPIPEELFAAVAEVLAYVYKM 346 >gi|323493113|ref|ZP_08098244.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546] gi|323312584|gb|EGA65717.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546] Length = 375 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 179/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +KTE S++KI+ A +EG P ++E + +A +Y S I++ + Sbjct: 1 MSEQ-SSQDKTEQASAQKIKKARDEGQIPRAKEFTTAVIFVAVAVYFYSQISA-IWNSIA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S ++ L + ++ L H +L++P ++ ++ + S LI + Sbjct: 59 GIFRYNMSLNKQDLANPLQMIEQLGHSLGVVIQLLLPLFVVIIVVAVASSLILGGWMFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +V P +++ GIKR++S + V +KS K+ ++ ++ L + +L + Sbjct: 119 ANVMPKLSKLNPLSGIKRMFSSRSFVELLKSTFKVAVIFALLYAYLNNHLQPLLGMQMLS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+++ + V+DI + + +L+M+KQEIK+E K + G P Sbjct: 179 LEQGVVKVMMILFDGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQEIKEEYKNNEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + R K+ + A ++ITNPTHYA+A++Y ++DAP +VAKG + A Sbjct: 239 EVKQRIRQIQQQFARRKIEKMVPTADVVITNPTHYAVAVKYDPAQSDAPFVVAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+ + I P L RS++ I A+P Y AVA ++ + K Sbjct: 299 MHIQRIARENQVEIVNSPPLTRSIYHTTAIEQAVPSQLYIAVAHILTYVMQLK 351 >gi|120613048|ref|YP_972726.1| type III secretion exporter [Acidovorax citrulli AAC00-1] gi|120591512|gb|ABM34952.1| type III secretion exporter [Acidovorax citrulli AAC00-1] Length = 390 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 161/350 (46%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + +K + +K++ A EG A SR+ S + + + + I + + Sbjct: 2 DSSSQDKQLPATERKLQKAREEGQAARSRDLSHIAILGMGAVSIYALAPSLIEHLQQAIA 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L S + ++ L ++ LL + + S + + V Sbjct: 62 HHL-SFNAETVHATGSMLQRLQDMTFVGLAASFAFALLTTVATVASAIGSGGWIFTFKPV 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P+F R++ G ++S +V +K + ++ + ++ + + + Sbjct: 121 MPNFTRLNPISGFANLFSKQQMVTVLKMVLMTGILAAVAWSFMSTSIEKIAMLVLQPSPV 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L + + + ++LL + ++D+ + S+ KMS +E+K E KQS G+P +K Sbjct: 181 ALRYVAEWITGGMALLLLVVFLAAIIDVPLQAFFFKSRQKMSHEEVKQEHKQSEGSPEVK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 RQ+ AR + +A ++ NPTHYA+ALRY + AP +V+KG +L+A K+ Sbjct: 241 GRQRQRARDIASRASLANVPKADFVVMNPTHYAVALRYDEATMGAPQVVSKGTDLLAFKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A +H++P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 301 RELANQHSVPVLQSPMLARALYANAELEQPIPAQLYAAVAQILAYVYRLK 350 >gi|83589641|ref|YP_429650.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC 39073] gi|83572555|gb|ABC19107.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC 39073] Length = 374 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 184/346 (53%), Gaps = 2/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 + KTE + ++++ +G S + S +LAC+++L + ++ + L Sbjct: 28 EEKTEEATPHRLQEVRQKGQVARSNDLSTAMVLLACVVFLYWRRETFYQAMADLITSTLQ 87 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++L D ++ L + L+L L+ P L L G+ + Q V +L + P Sbjct: 88 DGWHQQL-DGGSLMALGSQLALKVGLLLAPLLALAAAVGLAANFAQTGFVFSLEPLLPRL 146 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + + +G++R +S L+ +KS K+++V ++ + + +L + + L Sbjct: 147 ENLDPVKGMQRFFSRRALMELLKSLAKVVVVSLVVWQLVKGQFTQLLLTVDMGLPATLDL 206 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V +V + + L D + ++ L+M++QE+K+E+KQ G+P++++R + Sbjct: 207 VSRMVYRVGLGTVAVFLALAAADYVFQRREYQKNLRMTRQEVKEEMKQMEGDPLVRSRLR 266 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R RH+MM A AT++ITNPTH A+ALRY + E AP +VAKG IA++++ +A Sbjct: 267 EKQRQLARHRMMHAVPEATVVITNPTHVAVALRY-REEERAPRVVAKGAGSIAERIKAVA 325 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 HN+P+ E P +AR+L++QV + IP Y+AVA+++ +IY + Sbjct: 326 RRHNVPVVENPPVARALYRQVELGQEIPVALYQAVAEILARIYKLR 371 >gi|332297777|ref|YP_004439699.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM 12168] gi|332180880|gb|AEE16568.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM 12168] Length = 378 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 86/352 (24%), Positives = 170/352 (48%), Gaps = 8/352 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE PS K+ A EG P S+E S +L ++ L+ L Sbjct: 29 EDEGRTEQPSETKLRKAREEGRIPKSQELSGALVLLFPVLALIMLAPWLFTGFIKILRFY 88 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124 +L D + + + R+V+P L ++ GI + +IQ + ++ Sbjct: 89 FDRCVSVELNDPALAAEFFS----AVIRMVLPVSLTALVAGIAANVIQNRGFLFTTKPIE 144 Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P F ++ G K ++S N +KS +K+ ++ I + + +L + + Sbjct: 145 PKFSKILPHFGEYFKKTLFSFEGAFNIVKSLLKVTVIFAAAYILVKNDLPKLLSLMDVSL 204 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + + + K+L++ + + + D Q+ +KMSKQE+K+E K+ G+P+ Sbjct: 205 WTGVAYIAGMTAKLLVIAAVIFIVIAIPDYLVQRRQFMESMKMSKQEVKEEFKEMEGDPL 264 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K+R + + M +++ ++ITNPTHYA+A+ Y + P++ AKG + +A+ Sbjct: 265 VKSRIRQYMHQMLSQNMPANVAKSDVVITNPTHYAVAIEYDSSVMQGPMVTAKGVDSLAR 324 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA E+ +PI E LAR+L+ + I +P +Y+A+A ++ +Y+ K Sbjct: 325 RIKDIARENAVPIVENRPLARALYAEAEIGEIVPENYYQALAVILANVYNMK 376 >gi|326319086|ref|YP_004236758.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375922|gb|ADX48191.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC 19860] Length = 390 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 162/350 (46%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + + +K + +K++ A EG A SR+ S + + + I + + Sbjct: 2 DSSSQDKQLPATERKLQQAREEGQAARSRDLSHLAVLGMGAVSTYALAPSLIEHLQRAIA 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L S + ++ L ++ +L + + S + + V Sbjct: 62 HHL-SFNAETVLATGSMLQRLQDMAFVGVAASFAFAVLTTVAAVASAIGSGGWLFTFKPV 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P+F R++ G ++S ++V +K + ++ + ++ + + + Sbjct: 121 MPNFSRINPLSGFSNLFSKQHMVTVLKMVLMTGILAAVAWSFMSTSIEKIAMLVLQPSPV 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L + + + ++LL + ++D+ + S+ KMS +E+K E KQS G+P +K Sbjct: 181 ALRYVAEWITGGMALLLLVVFLAALIDVPLQAFFFKSRQKMSHEEVKQEHKQSEGSPEVK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 RQ+ AR + ++A ++ NPTHYA+ALRY + AP +V+KG +L+A K+ Sbjct: 241 GRQRQRAREIANRASLGNVAKADFVVMNPTHYAVALRYDEATMGAPQVVSKGTDLLAFKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A +H++P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 301 RELANQHSVPVLQSPMLARALYANAELEQPIPSQLYAAVAQILAYVYRLK 350 >gi|264676579|ref|YP_003276485.1| type III secretion exporter [Comamonas testosteroni CNB-2] gi|262207091|gb|ACY31189.1| type III secretion exporter [Comamonas testosteroni CNB-2] Length = 393 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE +K + +K++ +G SR+ S + + + +L P I + Sbjct: 1 MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLMLMGTQPMINHLRE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + + + + L+ + S + + + Sbjct: 58 AMARQLV-FNAAAAKTPALMLERFQSMLVLGLGIAVIFALVTTTASVLSGVAAGGWIFSF 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S L +K I++G + ++ N + + Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLGFVAWKYMSANIAEIASVSAQP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + + ++L+ + + ++D+ + S+LKMS +E+K E K+S GNP Sbjct: 177 SPMALTMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMSHEEVKQEHKESEGNP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + R + A +A ++TNPTHYA+ALRY AP ++AKG +L+A Sbjct: 237 QLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDASMAAPQVIAKGTDLVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349 >gi|89072287|ref|ZP_01158866.1| flagellar biosynthetic protein [Photobacterium sp. SKA34] gi|89051819|gb|EAR57271.1| flagellar biosynthetic protein [Photobacterium sp. SKA34] Length = 375 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ + D KTE + +KI A +G P +++ + + +A +++ F I+ + Sbjct: 1 MSQSTSQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVIVFFYFQI-DVIWQALN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ L + L +L++P L ++ I S L+ + Sbjct: 59 GVFKLNMTMSRDDLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWLFYP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ GIKR++S +LV +KS +K+ ++ ++ + L N +L + Sbjct: 119 AGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDTNLSRLLGMQNLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++++ + + ++DI + + +LKM+KQE+K+E K + GNP Sbjct: 179 LKQGVSLIMTILFHGILLMGIALFLFGLIDIPYQKWEHAKELKMTKQELKEEFKTNEGNP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + I + R ++ +A +A ++I NPTHYA+A++Y T ++A +VAKG + A Sbjct: 239 EIKQRIRQIQQQFARRQIDKAVPKADVVIVNPTHYAVAIKYDTTLSEALFVVAKGIDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IA +H++ I P L R+++ I AIP Y AVA ++ + K Sbjct: 299 MHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351 >gi|299531277|ref|ZP_07044687.1| type III secretion exporter [Comamonas testosteroni S44] gi|298720684|gb|EFI61631.1| type III secretion exporter [Comamonas testosteroni S44] Length = 393 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE +K + +K++ +G SR+ S + + + +L P I + Sbjct: 1 MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLMLMGTQPMINHLRE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + + + + L+ + S + + + Sbjct: 58 AMARQLV-FNAAAAKTPALMLERFQSMLVLGLGIAVIFALVTTTASVLSGVAAGGWIFSF 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S L +K I++G + ++ N + + Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLGFVAWKYMSANIAEIASVSAQP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + + ++L+ + + ++D+ + S+LKMS +E+K E K+S GNP Sbjct: 177 SPMALAMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMSHEEVKQEHKESEGNP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + R + A +A ++TNPTHYA+ALRY AP ++AKG +L+A Sbjct: 237 QLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDASMAAPQVIAKGTDLVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349 >gi|325921925|ref|ZP_08183736.1| HrcU protein [Xanthomonas gardneri ATCC 19865] gi|325547627|gb|EGD18670.1| HrcU protein [Xanthomonas gardneri ATCC 19865] Length = 357 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 164/343 (47%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + + Sbjct: 2 SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 T + D + + L + + A L +P + + G+ +Q +L V P Sbjct: 62 DFTTNTR--DATALQRALGRIGIQAVLLTLPFVAACLAAGLIGTFLQTGLNASLKPVTPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G K+I+S+ N ++ MK +K ++G ++ L T++ + I Sbjct: 120 FDSLNPVNGFKKIFSLKNFIDLMKLGIKAAVIGVVLWYGLRALMPTIIGLVYEPTPYIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + + +L + D + + +MSK E K E K+S G+P +K ++ Sbjct: 180 ICWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPELKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAY 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A IPI P LAR+L +V + A+P ++ VA ++ + Sbjct: 300 AQNQGIPIVANPPLARALH-EVDLGDAVPESLFETVAVVLRWV 341 >gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3 str. Alaska E43] Length = 610 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 184/347 (53%), Gaps = 2/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + KK D+ +G S++ S+ ++ AC + + + + + L LA Sbjct: 262 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 321 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ F+ L L + + +P L M+ G+ + +IQ ++ +KPS Sbjct: 322 FPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 380 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G+K ++S +LV +K+ V + ++ + + NY +++ + S+ Sbjct: 381 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 440 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + + I L + + D + +LKM+KQEIKDE KQ+ G+P +K + K Sbjct: 441 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 500 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKI 306 R +MM++ S AT++ITNPTH A+AL+Y + +AP +VAKG + +A +++ I Sbjct: 501 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 560 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++++PI E LAR ++ +V I+ IP Y+ VA+++ + K Sbjct: 561 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 607 >gi|303326438|ref|ZP_07356881.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3] gi|302864354|gb|EFL87285.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3] Length = 359 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 175/354 (49%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M ++TE + K+ EGN P S+E S+ LI L + P + + Sbjct: 1 MFGKQQDPSRTEEATPKRRNKQRQEGNVPKSQELGKAVSLTGGLIALHLWLGPMTEEIKT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + + ++ L L++ ++++P LL + +Q + Sbjct: 61 LFRRFLGHAWEFD-PNPQNVYTLSIDLTVELCKIILPILLFLGFLAFLAQRLQVGKLWTT 119 Query: 121 NHVKPSFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 K ++R ++ +G+K++ +S + +KS + I++ I + + Y L A Sbjct: 120 KVFKFKWQRFNIIKGLKQMMFSPQTALRTIKSLLFSIILALIPGYLIYQEYQNFLPMYYA 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P + + K+ LL I + D+ S + +KM+K E+KDE KQ+ G+ Sbjct: 180 TPEGVAAYMLQMGLKLAYYALLPILAIAAFDVWQSRFAYKEGMKMTKDEVKDERKQAEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK +Q+ + +MM+ +A +++TNPTH A+ALRY E APV++AKG + + Sbjct: 240 PVIKGQQRRKMMEVVMKRMMQDVPKADVVVTNPTHIAVALRYNAQEAPAPVVLAKGADHL 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A+K++ +A EHN+PI E LAR+L+K V + +P YKAVA ++ I+ K Sbjct: 300 AEKIKAVAREHNVPIRENVPLARALYKAVEVGDMVPEELYKAVATVLASIWKLK 353 >gi|32471372|ref|NP_864365.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1] gi|32443213|emb|CAD72044.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1] gi|327537626|gb|EGF24338.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica WH47] Length = 360 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 175/350 (50%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D+ +K + S +K A +G S++ + + +LA + L ++ + Sbjct: 2 SDSGGDKKHSASERKRRQAREKGQIAKSQDLTSATLLLAAIGALYAIGGNMAAYLSGGIE 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + + ++L +S + +P ++L + G+ + Q +L+ + + Sbjct: 62 QALGETKLAPMTNQDATQYML-QISQRLAMAAVPMMILMFIGGVLINVFQSGLLLSTDKL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P +S G KRI S+ ++ + K+ ++G I ++L ++ ++ S + Sbjct: 121 MPKLSNISPMSGAKRILSLQGVMRLVFGMFKVGIIGGIAYLALRAHHGDVISMASLSVPQ 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + F T+ V + I + + L +L+ + + + L M+ QE++DE+K + +P + Sbjct: 181 LAKSMFDTLFGVSLWIGVGLFVLALLEYVYQWWKTEQDLMMTDQEVRDEMKDTEADPQVA 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R++ +AR ++ +A ++ +NPT A+A++Y AP++VAKG +IA+++ Sbjct: 241 ARRRQVARQLAMGQLGSEVPKADVVASNPTELAIAIKYDPLTMPAPIVVAKGAGMIAQRI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A E+ IP+ E LA++L+K V + +P Y+AVA+++ +Y + Sbjct: 301 RRLALENGIPVVERKELAQALYKLVDVGQEVPAEQYQAVAEILRYVYQMQ 350 >gi|260778657|ref|ZP_05887549.1| type III secretion inner membrane protein HrpY [Vibrio coralliilyticus ATCC BAA-450] gi|260604821|gb|EEX31116.1| type III secretion inner membrane protein HrpY [Vibrio coralliilyticus ATCC BAA-450] Length = 350 Score = 320 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 161/343 (46%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K++ DA +G S E + L Y + + ++ + + + S Sbjct: 3 EKTEKPTQKRLRDARKKGQVIKSNEIVTGFQMAVILGYFIIEGQGMMEAIWKMIDLAITS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 +V ++ + R + + + ++ S ++Q PV +KPSF Sbjct: 63 IDLPLKVAAETVVAAFVYILI---RFIAGLVFILVITVAFSCMVQTGPVWASESLKPSFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +V++ K I+S+ +L K+ +KI+++ + L ++ + + Sbjct: 120 KVNVINNAKNIFSMKSLFELCKNMLKILVLSLVFYYLLHQHVNMFQYLPTCGVDCGVEII 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F ++ + L+ +V D + + Q +LKMSK++ K E K++ GNP +K +++ Sbjct: 180 FTLIKWLWGAFLVCYLVFSVGDYAFVHFQTMKQLKMSKEDTKQEYKETEGNPEVKQKRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R ++ ++T+I+ NPTH A+ L Y E P+++ K Q +A + ++A Sbjct: 240 LQRETANGSLVSNVKKSTVIVRNPTHIAVCLYYQPGETPLPLVLDKAQEHMALHVVEMAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +H +P+ E LAR+L+ QV IP ++ VA+L+ + + Sbjct: 300 KHEVPLVENIPLARALYHQVEPGQVIPESLFEPVAELLRVVMN 342 >gi|46581635|ref|YP_012443.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str. Hildenborough] gi|120601206|ref|YP_965606.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris DP4] gi|46451058|gb|AAS97703.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str. Hildenborough] gi|120561435|gb|ABM27179.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris DP4] gi|311235277|gb|ADP88131.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris RCH1] Length = 357 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 176/348 (50%), Gaps = 4/348 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +TE + K++ A N+GN S+E S + A L+ + F + Sbjct: 1 MAQKDPS--RTEQATRKRLNKARNKGNVAKSQEVSKAVTTFAGLVAITFMLG-VLNEHMQ 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ S + + LL + + +++P +L + + +Q + Sbjct: 58 EVFRFFLSRPHDFTPNEQTVYSLLLWSAGELAIMLLPIMLFIGLAAFIAMRLQVGKLWTT 117 Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 K + R ++ +KR++ S L+ KS ++ + +G I L + +L A Sbjct: 118 EVFKLDWSRFNVINALKRMFISPQTLIRLGKSLLQAVFIGIAPIIVLKQEMLNLLPLYFA 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + I + T +++ L+ + + +D+ ++ + LKM+K E+KDE KQ+ G+ Sbjct: 178 DMSGIAVYMLETGARMVKYALVPMVIIAAVDLWYTRWDYNENLKMTKDEVKDERKQAEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P++K++Q+ + +M++ A ++ITNPTH A+ALRY T AP++VA G + + Sbjct: 238 PVVKSQQRQKMMKVMAQRMLKEVPTADVVITNPTHIAVALRYDVTAAPAPIVVAMGADHL 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 AK++R++A EHN+PI E LAR+L+K V + IP YKAVA ++ Sbjct: 298 AKRIREVAREHNVPIRENKPLARALYKSVEVGDMIPAELYKAVAAILA 345 >gi|224825749|ref|ZP_03698853.1| type III secretion exporter [Lutiella nitroferrum 2002] gi|224601973|gb|EEG08152.1| type III secretion exporter [Lutiella nitroferrum 2002] Length = 380 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 156/353 (44%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE + K+ A +G SR+ + +L L L F PG Sbjct: 1 MAETRGGD-KTEKATPHKLRQARQQGQVARSRDMASAIGLLVAL-KLAFLSMPGWLDDFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + + L + ++++P ++ ++ S L V Sbjct: 59 RLFALSFATLSGQGALGNTWSMLFSGTLTLLVKMILPLAVIPLLVATVS-LFPGGWVFAS 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 H +P R++ RI S + + KS VK +++G ++ Sbjct: 118 RHFQPRLDRLNPLAHFGRIASPQHASDIAKSIVKALVLGAVLYHVSRGAAQDFFALQGVP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A + L+ + ++D+ + + +MSKQEIKDE K + G P Sbjct: 178 LDEALSRAASLLMDALLALTAVFIAFALIDLPLQTLLFLRQQRMSKQEIKDEYKTTEGRP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R + + + + ++ A ++I NP+HYA+AL+Y + +AP ++AKG + +A Sbjct: 238 EIKQRVRQLQLQMAQRGVRKSVPTADVVIVNPSHYAVALKYDEDRAEAPFIIAKGIDEMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 298 LYIRQVAAEHAVEVLPIPPLARAVYHTTQVNQQIPAPLYRAVAQVLTYVLQLK 350 >gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 613 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 184/347 (53%), Gaps = 2/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + KK D+ +G S++ S+ ++ AC + + + + + L LA Sbjct: 265 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 324 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ F+ L L + + +P L M+ G+ + +IQ ++ +KPS Sbjct: 325 LPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 383 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G+K ++S +LV +K+ V + ++ + + NY +++ + S+ Sbjct: 384 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 443 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + + I L + + D + +LKM+KQEIKDE KQ+ G+P +K + K Sbjct: 444 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKI 306 R +MM++ S AT++ITNPTH A+AL+Y + +AP +VAKG + +A +++ I Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++++PI E LAR ++ +V I+ IP Y+ VA+++ + K Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 610 >gi|171058301|ref|YP_001790650.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6] gi|170775746|gb|ACB33885.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6] Length = 385 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 169/351 (48%), Gaps = 3/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ +K P+ ++++ A +G SR+ + F+ + A L L+ F +P + Sbjct: 1 MA--DSAQDKHLPPTERRLQKAREDGQVARSRDLAHFAVVAAGLA-LVMFAAPSLTQWLR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL R + + L+ L A L + ++ + + + ++ V Sbjct: 58 DLMATGLRFDVRMVTSPQMMGERLSQLMYPALALCLGLGVVTGLVAMAAAVVSGGWVWTF 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ G+ RI S + + +K+ + +++ ++ L + S Sbjct: 118 KPLMPDFSKLNPLTGLGRIVSKAQIGDMLKACLLALILASVGAAYLWAHLNDFALTQSMP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A + L ++++ +A ++D+ ++LKMS Q++K+E KQ GN Sbjct: 178 LPAAFIAATDRISTGLWLLMIVLAASAMVDVPLQRFMHRNRLKMSHQDMKEEFKQQEGNQ 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + K R R +M+ A A +++ NPTHYA+AL+Y AP +VA G +L+A Sbjct: 238 EVKGKMKQRMREGSRRRMLAAVPEADLVVMNPTHYAVALKYDDASMGAPRIVAMGADLLA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+R +A E +P+ + P LAR+L+ ++ IP Y AVAQ++ ++ Sbjct: 298 LKIRDVAKESKVPVLQSPPLARALYAHGELDREIPLALYSAVAQVLAHVFQ 348 >gi|284041540|ref|YP_003391880.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684] gi|283945761|gb|ADB48505.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684] Length = 358 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 167/345 (48%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D++TE + +K +DA G S + + ++A L L + ++ + + Sbjct: 3 DDRTERATPRKRDDARRRGQVARSMDVNGAVVLIAGLFALSLLGPAVVGAMETSMRDSFE 62 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + + + + +L L I P + + GI + L Q + +KP Sbjct: 63 RISDPQAALTAGGLEGIAMSTLRTLALAIGPVAAVCAIAGIVANLGQVGLKPSAEALKPQ 122 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +R++ G + ++ KS VK+ ++G I+ +++ + + A+P + Sbjct: 123 AQRINPLSGARNVFGPRMFFEGAKSIVKVAVIGVIVAMAVAPKMTELSATVGASPGQLAA 182 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V + + + +D + + +L+MS Q++KDE + +K+ Q Sbjct: 183 ELVSLVLSISQRAAIAYLVIGAIDYAYQKYTHEKQLRMSMQDVKDEFRSQQLPAEVKSMQ 242 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + R +MM A A +++TNPTH+A+AL+Y T+ AP++VAKGQ+LIA ++R++ Sbjct: 243 RRRMMQQARARMMSAVPDADVVVTNPTHFAVALKYDGTK-PAPIVVAKGQDLIALQIRRL 301 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A EH++P+ E LARSL V + IP Y+AVAQ++ +Y Sbjct: 302 AAEHDVPVIENRPLARSLHATVEVGQMIPEDLYQAVAQVLAHVYR 346 >gi|221069313|ref|ZP_03545418.1| type III secretion exporter [Comamonas testosteroni KF-1] gi|220714336|gb|EED69704.1| type III secretion exporter [Comamonas testosteroni KF-1] Length = 393 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE +K + +K++ +G SR+ S + + + +L P + + Sbjct: 1 MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLVLMGTQPMMNHLRE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + ++ + + + + L+ + S + + + Sbjct: 58 AMAQQLV-FNAVTAKTPALMLERFQSMLMLGLGISVIFALVTTTASVLSGVAAGGWIFSF 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S L +K I++G + ++ N + + Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFLTIVLGFVAWKYMSANIAEIASVSAQP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + + ++L+ + + ++D+ + S+LKMS +E+K E K+S GNP Sbjct: 177 SPMALAMVGSWLTTGVTLLLVVVLLVALIDVPLQAFLFKSRLKMSHEEVKQEHKESEGNP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + R + A RA ++TNPTHYA+ALRY AP ++AKG +L+A Sbjct: 237 QLKGKIRQKQREIADRASVSAVPRADFVVTNPTHYAVALRYDDATMAAPQVIAKGTDLVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R+IA H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349 >gi|241763666|ref|ZP_04761716.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN] gi|241367141|gb|EER61507.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN] Length = 384 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 84/349 (24%), Positives = 156/349 (44%), Gaps = 1/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ K+ + +K++ A +G SR+ S + + A LL + + L Sbjct: 2 ESSQEKSLPATERKLQKAREDGQGARSRDLSHLAILGAGAACLLVLTPQLMEHMQRALGQ 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L + + ++ L + + +L + S + + + + Sbjct: 62 QLR-FDSSTVMAPASMLTRLKDMVMVGLVASAVFAVLTSGAALISAIGAGGWIFSAKPIT 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ G ++S + N K + ++ + + + +M + Sbjct: 121 PQFNRLNPISGAANLFSKQQMANVAKMVLMTAILSFVAWKFMGNSIDSMAMLVLQPSPLA 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L H + ++LL + V+D+ + + S+LKMS +E+K E K+S GNP K Sbjct: 181 LRHVAQWLTSGASLLLLVVFLAAVIDVPLQAYFFKSRLKMSHEEVKQEHKESDGNPHTKG 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R + R + A +A ++ NPTHYA+AL+Y AP ++A+G +LIA K+R Sbjct: 241 RIRQRQREMADRASVGAVPKADFVVMNPTHYAVALKYDDKTMSAPQVIARGTDLIAFKIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A H IP+ + P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 301 DLAGAHGIPVLQSPMLARALYAHAELDQAIPATLYTAVAQVLAYVYRLK 349 >gi|313681570|ref|YP_004059308.1| flagellar biosynthetic protein flhb [Sulfuricurvum kujiense DSM 16994] gi|313154430|gb|ADR33108.1| flagellar biosynthetic protein FlhB [Sulfuricurvum kujiense DSM 16994] Length = 355 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 174/352 (49%), Gaps = 5/352 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P++KK+EDA EGN P S++ + ++ +L F+ I Sbjct: 1 MADD---QEKTEEPTAKKLEDARAEGNVPKSQDVVGVVVLFVSILAVLMMFT-FIADRML 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L S ++ L D +V L + +P ++ + G+ + Q Sbjct: 57 HLSQYYFSLMRQPL-DRELMVDLAVVTMKEFLIMALPVSIIVAVAGVFGTVAQIGFNFTT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F ++ +G ++++ + +K +K I + + Sbjct: 116 KPLTPNFSKLDPIKGFANLFTLQKGLESIKITLKSFTALGIGFLYFWYFVEELPTVALFT 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++LL I V+D+ ++ KLKMS QEIKDE+K G+P Sbjct: 176 LQDQMGWLRDKAIVLASVMLLIIFVYAVIDLFLVRKHYFDKLKMSLQEIKDEMKNMEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + I R +MM + A ++ITNPTHYA+A+ Y + +++APV+VAKG + +A Sbjct: 236 HIKAKIRQIQMQAARKRMMTSVPTADVVITNPTHYAVAIVYDENKHNAPVVVAKGVDNMA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +++K+A E+ + I + P LARSL+K+V I+ IP + + AVA+++ +Y Sbjct: 296 IQIKKVARENGVHIVQNPPLARSLYKEVDIDHPIPDMLFAAVAEVLAYVYKM 347 >gi|331657929|ref|ZP_08358891.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206] gi|331056177|gb|EGI28186.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206] Length = 345 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 86/313 (27%), Positives = 167/313 (53%) Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100 + + +++F + S + + D + I+ + L A ++P + Sbjct: 1 MLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLIS 60 Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 ++ I S ++ V + ++P F +++ GIKR++S +K+ +K ILVG+ Sbjct: 61 GVVLVAIISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGS 120 Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220 + L ++ M+ ++ +P + + +A V ++++L + + D+ + Sbjct: 121 VTGFFLWHHWPQMMRLMAESPLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLK 180 Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 KL+MS+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+ Sbjct: 181 KLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQ 240 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y + + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y Sbjct: 241 YDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYA 300 Query: 341 AVAQLIYKIYHKK 353 AVA+++ ++ K Sbjct: 301 AVAEVLAWVWQLK 313 >gi|188997532|ref|YP_001931783.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp. YO3AOP1] gi|188932599|gb|ACD67229.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp. YO3AOP1] Length = 350 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE + K+ + A EG S + S+ +S+ I L+F+ + Sbjct: 1 MAKDP---RKTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLLG 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ E+ ++ + +L+ + I S ++Q + L Sbjct: 58 YFKYTFSNPLYLISENGRMFIWFTLKILAILILP---VILILFVVAIASNVMQFGFLFTL 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++++ GIKRI+S+ L +K+ K+ + + + L +++ + Sbjct: 115 KPLTPKLDKLNVISGIKRIFSLTVLFELIKNLAKLTVALFLSYFLVKYLLNDFLVYMTGS 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ +Y T+ +++ + + D + +++ LKM+K E+K+E K GN Sbjct: 175 INNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSYEGNL 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K + R +M+ +A ++ITNP HYA+AL+Y + + AP ++AKGQ+LIA Sbjct: 235 LVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVLAKGQDLIA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K++++A EH++ I E+P LAR+L+ I IP Y+AVA+++ +IY K Sbjct: 295 QKIKEVAKEHDVKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKFK 347 >gi|260429624|ref|ZP_05783601.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45] gi|260420247|gb|EEX13500.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45] Length = 365 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 162/349 (46%), Gaps = 2/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D D KT PS +K+E+A +G P S + + L L L + + Sbjct: 1 MAEDDGGD-KTHEPSPRKLEEARRKGEIPRSPDMLTAACYLGMLATGLALGGGSVMGFGN 59 Query: 61 DLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L+ + + + + L+A V+P L + + + + R V Sbjct: 60 ALLPLIEQPDRLVPLFFNDMASAPSGGILLAAITPVLPWLGVPALAVLLTLFATRGLVFT 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + R+S E K + L F+KS K++L ++ L+ + + Sbjct: 120 ASKLSLKASRLSPVENAKNKFGRRGLFEFVKSLAKLVLYSVLLGFFLSTRLDEIAGIGRS 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + H + ++L + + L +D W + + +MS++E++DE K++ G+ Sbjct: 180 SAHEATALMADLMLRLLGIAAMIAVGLGTIDYLWQRAEHMRRNRMSQKELRDEYKEAEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+ K +++ A+ ++MM A ++I NPTHYA+AL++ + +APV VAKG + I Sbjct: 240 PMFKQHRRARAQEIAMNRMMVDVPDADVVIVNPTHYAVALKWSRQPGEAPVCVAKGVDEI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A+++R+IA + +PI +P AR++ I I Y+ VA I Sbjct: 300 ARRIREIAADSGVPIHSDPPTARAIHATTEIGDQIAAEHYRPVAAAIRF 348 >gi|220925376|ref|YP_002500678.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS 2060] gi|219949983|gb|ACL60375.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS 2060] Length = 353 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 180/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ + +++TE P+ K+++DA+ G+ S E + + + LL Sbjct: 1 MAGDTEQEDRTEEPTLKRLDDAIKRGDVATSVEVNTLFLLGGFTLVLLVAAGSAARGFAL 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ LAS D + + + V + + G+ L+Q V Sbjct: 61 DMRGFLASLHAVP-SDAAAYQAVARRALAALGLAVAVPVGAAVAAGLAGGLLQHPFVWTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++RVS G++R++ F K VKI LVGT+ + L + + F + Sbjct: 120 ETLSAKWERVSPLAGLRRLFGPEAWFQFGKGLVKIALVGTVAGLVLWGDRDRLEAFARLD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +IL V +++ IL L + D + +W ++L+M++ EIK+E+K+S GNP Sbjct: 180 PAAILPATLVLVLRLMAGILAAYVVLALGDAVYQRLRWRARLRMTRTEIKEELKESDGNP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + +R R +MM A AT+++ NPTH+A+ALRY APV VAKG + +A Sbjct: 240 EVKARLRQLRHARARKRMMAAVPTATVVVANPTHFAVALRYETG-MAAPVCVAKGVDALA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R+IA + +P+ E P LAR+L V I++AIP YKAVA++I + ++ Sbjct: 299 LRIREIAGANGVPVVENPPLARALHATVEIDAAIPTEHYKAVAEVIGFVLRQR 351 >gi|118592629|ref|ZP_01550019.1| translocation protein in type III secretion [Stappia aggregata IAM 12614] gi|118434680|gb|EAV41331.1| translocation protein in type III secretion [Stappia aggregata IAM 12614] Length = 371 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 171/349 (48%), Gaps = 4/349 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ KTE P+ KK+ DA +G S++ S+L + YL + Sbjct: 1 MSQQPTG-EKTEQPTHKKLRDARKKGQVARSQDLVTTISLLGVIAYLWLAWDYNFAKFVE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++ A + + + +S+ +V+P L + GI Q + Sbjct: 60 MLDIVAALHGAGFRASAFNALQAMFDISIV---VVLPLLGVGFALGIAGNYFQFGSIFAF 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++KP + +S +G+K+I+S+ LV F+KS +KII + ++ + + ++ + Sbjct: 117 ENLKPKIENISPAKGLKKIFSVKQLVEFLKSLIKIIFLSVLLFFVIRDAIGPYMNAVQCG 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + L+ L A ++ D + Q +L M+K E++ E K++ G+P Sbjct: 177 LQCLTAVTSSMLLTTLLFTALAFAIVSGFDFIFQKFQHKKELMMTKTEVQREYKETEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK R+K +A+ + ++ T AT +I NPTH+A+ + Y P++VAKG+NL A Sbjct: 237 LIKGRRKQLAQEMVLSDGIDRTRNATAVIVNPTHFAVVIDYKPDIAPLPLIVAKGRNLHA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +R A +H +P+F LARSL+ + + + +P +++ +A+++ + Sbjct: 297 HDLRTEAEKHGVPVFRNVLLARSLYAESDVGAFVPDEWFEVIAKILVWV 345 >gi|296282253|ref|ZP_06860251.1| flagellar biosynthesis protein FlhB [Citromicrobium bathyomarinum JL354] Length = 374 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 169/353 (47%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE KT AP+ K++ DA N+G+ S++ + +L +L F + +++ Sbjct: 1 MSET--AGEKTFAPTEKRLRDAANKGDVLRSKDLGTAAVMLVGAAWLAFAGPWLLSEISN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++ D ++ L+ +A + + ++ + S L Sbjct: 59 LLRESF-QFDSSEIVDFRPDRLMIEGLT-AALPPIFALAVPVIIVTLLSQLAFGRGRFVA 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +++ R++ G+KR++ N L+ K +K++L+G + + + +Y +L N Sbjct: 117 KNLEFKHTRINPASGLKRMFGPNGLIEMGKGILKVVLLGGLAALWWSYSYENLLGLGRGN 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A+++V + +++ + + +D+ + + KLKMS QE+KDE K+S G+P Sbjct: 177 LSQQLTTAWWSVISLFLVLCGGLVVIAAVDLPIQWVRRNKKLKMSHQEMKDENKESEGSP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 K+ ++ R + A A +ITNPTH+A+AL Y + AP+++AKG+ A Sbjct: 237 EAKSARRQRQRDIAAGSVSGAMREAQFVITNPTHFAVALSYDPEKASAPIVLAKGRGEKA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 M+++A E +P E P LARS++ I Y A+A ++ + K Sbjct: 297 LAMKELAREFGLPTLEYPQLARSVYFTSRERQVICEDLYGAIAAVLAYVLSLK 349 >gi|307720616|ref|YP_003891756.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM 16294] gi|306978709|gb|ADN08744.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM 16294] Length = 350 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 183/352 (51%), Gaps = 5/352 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ KKIEDA EGN P S++AS ++ ++ +L F P + Sbjct: 1 MADD---QEKTEEPTPKKIEDARKEGNVPKSQDASGVLTLFVAILGVLMLF-PFMAEHMI 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L S ++ + + + + +V+P + G+ + L Q + Sbjct: 57 HLFRYYFSLIGMPVDKLFAMDIAIVTI-KEFLLMVLPLATAVAISGVIAALAQFGFLFTT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P FK++ +G K ++S+ L+ +K +K + I + Sbjct: 116 KAIMPDFKKIDPIKGTKNLFSLKKLIEGVKVTLKSFTTLGVGFIFFFYFIQELPTVALFG 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 H L + + ++L I ++D+ Q++ LKMSKQEIKDE+K G+P Sbjct: 176 LHDQLMWLKDKMIIIAFVMLFIIFIFAIIDVIIVRKQYFDGLKMSKQEIKDEMKNMEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK++ + I + +MM A ++ITNPTHYA+A++Y ++++ AP++VAKG + IA Sbjct: 236 LIKSKIRQIQMEASKKRMMAEVPNADVVITNPTHYAVAIKYDESKSHAPLVVAKGMDNIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++++KIA E+++ I + P LARSL+K+V ++ IP + AVA+++ +Y Sbjct: 296 QQIKKIARENSVHIVQNPPLARSLYKEVDVDKPIPEALFSAVAEVLAYVYKM 347 >gi|332294884|ref|YP_004436807.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense DSM 14796] gi|332177987|gb|AEE13676.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense DSM 14796] Length = 349 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 177/349 (50%), Gaps = 8/349 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 ++TE + ++ +A G S+E S I L FF G + + Sbjct: 4 DEGDRTEPATDRRRREARKMGQVAKSQELSSILVFFGSYIVLQFFLVIGFNNWFNVWKGF 63 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + D + + ++ L IP ++ + + S ++Q V+ + P Sbjct: 64 FS-------FDSLDLNLHYHNFIMAFLLLTIPPVVGALFMALFSNILQVGFVITPQVLIP 116 Query: 126 SFKRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F + + + KR+ S LV+ +K +KI+++ I+T SL E + +L+ + H Sbjct: 117 KFSNLDITKYFKRLLSFRGLVDQVLKPTIKILILAYILTSSLLEAFPEILNLSFIDVHKG 176 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 V +L+ ++ + ++D + Q+ ++MSKQE+K+E K + G+P+IK Sbjct: 177 FQIVIKIVTSILVKTMVVLFFFALIDYLFQRWQYEKSIRMSKQELKEEFKTTEGDPLIKA 236 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R K + R +MM+ +A +IITNPTH A+A+ Y + AP +VAKG ++A+K+ Sbjct: 237 RIKRLQSEMARRRMMQEVPKADVIITNPTHVAVAIFYDPEKFKAPKVVAKGMGIVAEKII 296 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +IA E+++P+ +LAR+LFK+V IN IP FYKAVA ++ +Y KK Sbjct: 297 QIAKENDVPLVRNETLARALFKEVEINFEIPEKFYKAVASILATVYKKK 345 >gi|260431743|ref|ZP_05785714.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis ITI-1157] gi|260415571|gb|EEX08830.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis ITI-1157] Length = 361 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 169/353 (47%), Gaps = 9/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ + +K++ A +G S + S ++ I LL + + Sbjct: 1 MSGQDDDSDKSFEATPQKLQKAREKGEVVKSNDLSAVAAYAGLTIALLAAGQYSAVHLGT 60 Query: 61 DLHVLLASATQR-----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 L VL+ + + ++ LL ++LSA L L + + + + L QR Sbjct: 61 ALMVLVDQSPSLSSLLVEGASTGPVLGLLKAVALSAGTL----LAVPTVVVLLNLLAQRA 116 Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175 V + +KP R+S+ K + L F+KSFVK+++ + + L N +L Sbjct: 117 IVFAPSKLKPKPSRISIPSNAKNKFGRGGLFEFLKSFVKLVIYCACLALFLQANLSQILS 176 Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 +A P + + + L +++ + V+D W Y + K +MS++E++DE K Sbjct: 177 AAAAPPRASILLMMNLLFHFLFIVVAITLAIGVIDYLWQYSEHMRKNRMSRKELQDETKD 236 Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295 S G+P +K ++ A+ +MM +A ++I NPTHYA+ L++ +T APV VAKG Sbjct: 237 SEGDPHVKQHRRQRAQEIATSQMMSDVPKADVVIVNPTHYAVVLKWDRTPGTAPVCVAKG 296 Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + +A +R IA E +P+ +P AR+L V I IP +Y+ VA I Sbjct: 297 VDEVAATIRSIAIEAGVPLHSDPPTARALHATVEIGQEIPEDYYRPVAAAIRF 349 >gi|325917015|ref|ZP_08179254.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937] gi|325536766|gb|EGD08523.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937] Length = 357 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 164/343 (47%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++DA +G PIS + + + +LA L+ + S + + + + + Sbjct: 2 SDEKTEKPTEKKLQDARRDGEIPISPDVTAAAVLLAALLVMKLAGSYFVEHMNALVSIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + + L + + + L +P ++ + G+ +Q +L V P Sbjct: 62 D--FTANTRDATALNRALARIGIQGALLTLPFVVACLAAGLIGTFLQTGLNASLKPVTPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+++++S+ +L+N +K +K ++G ++ L T++ I Sbjct: 120 FDSLNPVNGVQKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPVPDIAQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + + + +L + D + + +MSK E K E K+S G+P +K ++ Sbjct: 180 IGWRALGILSALAVLVFVLVGAADWSIQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K A+ + E ++A +++ NPTHYA+AL Y P +VAKG + A ++R Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAY 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+ IPI P LAR+L V + A+P ++ VA ++ + Sbjct: 300 AHNQGIPIVANPPLARALH-LVELGEAVPESLFETVAVVLRWV 341 >gi|34498065|ref|NP_902280.1| secretion system apparatus protein SsaU [Chromobacterium violaceum ATCC 12472] gi|34103920|gb|AAQ60280.1| type III secretion system EscU protein [Chromobacterium violaceum ATCC 12472] Length = 351 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 162/338 (47%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI DA N+G S E + + L Y F + ++ L+V ++ Sbjct: 3 EKTEKPTPKKIRDARNKGQVAKSTEITSGVQLAVLLAYFCFEGPHLLQALQGMLNVAISV 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + I+ + L++ R + L ++ I + + Q P+L +KPS + Sbjct: 63 VNQDLVFGINQLTGAFLELAM---RFLGGIAALVIIMTIAAVIAQIGPLLATEALKPSLE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +K+++S+ +L FMKS K+ ++ I L + ++ ++ + + + Sbjct: 120 KLNPVSNLKQMFSMRSLFEFMKSIFKVTILSLIFFYLLRQYSPSIQFLPLSDVATGMRVS 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + ++ F + D + + +L MS ++IK E K S GNP IK ++K Sbjct: 180 TQLLFWMWASLIGFYIIFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKQKRKE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + + S++T ++ NPTH A+ LRY E P + A G++ +A + K+A Sbjct: 240 AHREIQSGSLADNVSKSTAVVRNPTHIAVCLRYQPGETPLPQVTAVGRDAMALHIVKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + IP+ E +AR+L + I I ++ VAQ++ Sbjct: 300 KAGIPVVENIEVARALAAKTKIGGYISAELFEPVAQIL 337 >gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B str. Eklund 17B] Length = 613 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 183/347 (52%), Gaps = 2/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 D KTE + KK D+ +G S++ S+ ++ AC + + + + + L L Sbjct: 265 DEKTEEATPKKKSDSKKKGQMARSKDVSVAITMAACTLAVSMLWGSLVDTFKGVLTYFLV 324 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +++ + L++ L + + +P L M+ G+ S +IQ ++ +KPS Sbjct: 325 FPSLKDFNELTAMS-LISFSLLKVATVFLPFALAIMIAGVASSIIQTGFLITGEPLKPSL 383 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +G+K ++S +LV +K+ V + ++ + + NY +++ + S+ Sbjct: 384 GKINPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGDE 443 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 V + I L + + D + +LKM+KQEIKDE KQ+ G+P +K + K Sbjct: 444 IKNLVIGIFKQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKI 306 R +MM++ S AT++ITNPTH A+AL+Y + +AP +VAKG + +A +++ I Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++++PI E LAR ++ +V I+ IP Y+ VA+++ + K Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 610 >gi|297516775|ref|ZP_06935161.1| flagellar biosynthesis protein FlhB [Escherichia coli OP50] Length = 345 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 168/313 (53%) Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100 + + +++F + S + ++D + I+ + L A ++P + Sbjct: 1 MLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLIS 60 Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 ++ + S ++ V + ++P F +++ GIKR++S +K+ +K ILVG+ Sbjct: 61 GVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGS 120 Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220 + L ++ M+ ++ +P + + +A V ++++L + + D+ + Sbjct: 121 VTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLK 180 Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 KL+MS+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+ Sbjct: 181 KLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQ 240 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y + + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y Sbjct: 241 YDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYA 300 Query: 341 AVAQLIYKIYHKK 353 AVA+++ ++ K Sbjct: 301 AVAEVLAWVWQLK 313 >gi|87307411|ref|ZP_01089556.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM 3645] gi|87290151|gb|EAQ82040.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM 3645] Length = 369 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 179/353 (50%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D D+K+E P+ + ++A N+G S++ + + +L + ++ +FS I+ Sbjct: 1 MAEQD--DDKSEDPTQHRRDEARNQGQITKSQDL-ISAGMLVIALGVIMYFSQSIFHFFG 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D S + + ++ P LLL + I L+Q + Sbjct: 58 DFTRDKLSVPPPLEVSFGWAINENATAVWRLASVMTPILLLMFVAAIALNLMQTGFLFLP 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + KR++ G R++++ N V F +K+++V T+ +SL + T+L + Sbjct: 118 DKLSLDIKRINPMSGFGRLFALANFVKFGFGIIKVLIVSTVAAVSLYYDMPTILGLSELS 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I T + I + L ++D + + + LKM+KQE+++E+K G+P Sbjct: 178 AGEIASFLLTTAFWTSMKIAAALLILALMDYAFQWWKHEQDLKMTKQEVREEMKSLQGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 + R++ +AR ++M +A ++TNPT A+AL+Y + AP++VAKG L+A Sbjct: 238 SLIARRRQVARQLAMNRMSTDVPKADFVVTNPTELAIALKYDPYKMAAPIVVAKGAGLVA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R++A E NIPI E LAR+L++ I+ AIP Y AVA+++ +Y + Sbjct: 298 QRIRRLALESNIPIVERKELARALYRDAEIDQAIPAEQYAAVAEVLRYVYELQ 350 >gi|217976220|ref|YP_002360367.1| flagellar biosynthesis protein FlhB [Methylocella silvestris BL2] gi|217501596|gb|ACK49005.1| type III secretion exporter [Methylocella silvestris BL2] Length = 359 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 135/352 (38%), Positives = 219/352 (62%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ ++ +++TE + KKI D L GNAP SREA+LF+S+ A LI FF I S+T Sbjct: 1 MAD-ESTESRTEEATEKKIGDELERGNAPFSREAALFASVSAMLIIGAFFAQQCIASMTL 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LH LL A +L + + V L+ +S +++I ++F G+ + +Q P L + Sbjct: 60 LLHHLLDDAGGVRLRNGNDAVALMKLVSWDVFKVLIAPFVVFAAGGVLASALQNAPRLVV 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P+FKR+SL EG +R++ F KS VK+ + I+ L +++ ++ Sbjct: 120 DRILPNFKRISLTEGWQRLHGARGYAEFSKSVVKLASISVIVLAVLQSQQNKLVNAVALE 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++ K++ ++ + A L +D+ WS W ++MS+QEIKDE+KQS G+P Sbjct: 180 PEALPELILSVAMKLMSVVCIVTAALLAIDLVWSRFHWRRDMRMSRQEIKDEMKQSDGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 + K R +S+A+ R+R M+ A +AT++I NPTHYA+ALRY++ E AP++++KGQ+LIA Sbjct: 240 VRKARLRSLAQDRVRKNMIAAVPKATLVIANPTHYAIALRYVKEEGGAPMVISKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R++A H+IPI E+ LARS++ V ++ IPP FYKAVA+LI+ +Y K Sbjct: 300 LKIRELAERHSIPIIEDKLLARSMYDSVEVDHPIPPQFYKAVAELIHYLYSK 351 >gi|254255044|ref|ZP_04948361.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124899689|gb|EAY71532.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 379 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 83/354 (23%), Positives = 157/354 (44%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + +KTE + +K+ A G SR+ + L L + + Sbjct: 1 MSGGQSTGDKTEKATPQKLRKAKQRGQVARSRDIATAIGTLVSLKLAIVLAPAWL----D 56 Query: 61 DLHVLLASATQRKLEDISH---IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 D L A++ + D + L L +++ P + +GS L V Sbjct: 57 DFRRLFAASLVERFADGGAEHAMSTLFVTALLLIGKMLAPFAAVPACIVVGS-LFPGGWV 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + P +R++ G+KR+ S + + + K ++G + + + Sbjct: 116 FSHENFMPKAERLNPMSGLKRLVSGKHYMQLAITVAKATVLGATLWHVGRSSIDRFVGLQ 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + L ++++ + ++D+ + +MSK+++KDE+KQS Sbjct: 176 RVPFETALAGGAALFVDATLVLVGVLVAFAMIDVPLQRMLFMRGQRMSKRDVKDEMKQSE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G P +K R + I R R + + A +++ NPTHYA+AL+Y ++ AP +VAKG + Sbjct: 236 GKPEVKGRIRQIQRQMARRGIRKVVPDADVVLMNPTHYAVALKYDVSKAQAPYVVAKGID 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A +R +A EH I + E P LAR+++ +N IP Y+AVA++++ + Sbjct: 296 ETAHFIRDVAREHAIEVLELPPLARAIYHSSQVNQQIPAALYQAVAKVLFYVLQ 349 >gi|58039957|ref|YP_191921.1| flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H] gi|58002371|gb|AAW61265.1| Flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H] Length = 358 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 177/353 (50%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D KTEAPSS++++ A +G +SREA F ++L + + Sbjct: 1 MSDSDD---KTEAPSSQRLQKAREDGQIVMSREAMNFVALLGGFAGIFMVLPYLVMDFVH 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + VL+A+A + ++ H + +L +P + +G +Q +++ Sbjct: 58 VMQVLMANAGTVPMAQ-GGLLNSTDHAIEAGLKLAVPMAATVAVLCLGGGFLQTGFLIHP 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F+R+S G KRI L + K+ K + ++ + + Sbjct: 117 ESLLPKFERISPLAGFKRIAGGGTLPDTFKALAKFAIFAVVLWNISKGAIPSAPRMVGLE 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +L + ++L + DI W + SKLKMS++++KDE K + G+P Sbjct: 177 PGPLLKMMTDLGFRAASAMILAQLVIAGFDIFWMRFRHISKLKMSREDLKDEYKNTEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K RQK++ R +MM A AT+++TNPTHYA+AL Y + AP +VAKG + +A Sbjct: 237 HVKGRQKALRAKAARQRMMAAVKTATVVVTNPTHYAVALVYERGGGGAPRIVAKGMDDVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R IA ++ IPI P LAR+LF +P++S IP +K VA +I ++ K Sbjct: 297 ARIRDIAQDNRIPIVANPPLARALF-TLPLDSEIPAEHFKVVAAIIAYVWKLK 348 >gi|196045084|ref|ZP_03112317.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB108] gi|196024086|gb|EDX62760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB108] Length = 348 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|254464574|ref|ZP_05077985.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I] gi|206685482|gb|EDZ45964.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I] Length = 362 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ P+ +K+ A +G S + S+ ++ L +I S + + + Sbjct: 1 MSGQDDDSDKSFEPTEQKLRKAREKGEVAKSTDLSVAAAYLGLIIAFYTAGSSSVEGIGT 60 Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L + L + SA R V+P L+ + S + QR V Sbjct: 61 ALMAYLDQPDRLAPLFFEGPAAAPVGGFIGSAFRPVLPWFLVPFALVLLSIVGQRAMVFA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P R+S+ K + L F KSFVK+ L + + L+ M+ Sbjct: 121 PSKLEPKLSRISIVSNAKNKFGRAGLFEFFKSFVKLSLYSVCLGVYLSHRLPEMIASSGT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P S++ + L + L+ + V+D + + + K MS++EI+DE+K + G+ Sbjct: 181 GPQSVVLMLAQLSMEFLFLALIIALAIGVVDAAFQHAEHLRKNMMSRKEIQDEMKDAEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K++++ + +M+ +A ++I NPTHYA+AL++ + APV VAKG + I Sbjct: 241 PHMKSQRRQRGQQIAMGQMLADVPKADVVIVNPTHYAVALQWSREPGAAPVCVAKGVDEI 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +R++A E+ IPI +P AR+L + I I Y VA I Sbjct: 301 AAAIRRVANENAIPIHSDPPTARALHAAIGIGDEILEEHYAPVAAAIRF 349 >gi|289433957|ref|YP_003463829.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170201|emb|CBH26741.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 348 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 180/341 (52%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGGMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L +++ I + ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQP-----PNLASIESYSLFYIMEFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ LV +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 KQIFSLFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|254292632|ref|YP_003058655.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814] gi|254041163|gb|ACT57958.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814] Length = 354 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 180/351 (51%), Gaps = 2/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+ KTE P+ K+++DA +G+ S++ ++ + L+ P S+ Sbjct: 1 MAEDQDDSQKTEEPTQKRLDDARKKGDIAKSQDVPVWFIL-LAGAALIAGAQPLASSIGG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L +LL +L L+T + + + ++F I +++Q +P+ Sbjct: 60 PLTMLLDHPHDFQLSG-GGAQRLMTAILGELLGPMAIVFSIIIVFAISGHVVQHMPLWTA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++S G+KR++ +N K+ +K+I + ++ + ++ + Sbjct: 119 EKMKPKLSKLSPIGGLKRMFGPQGWMNLFKAILKLIAATVAVAFAVWPSRHELIKVGEMD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ ++ + L+ + + +D + K++MS+++IK E KQS G+P Sbjct: 179 ISALPLMIQDKASRLFLAALIVVGFIAAIDYVFQKQSHAKKMRMSREDIKQENKQSDGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K + ++ R R + +MM A AT+++TNPTHY++AL++ + AP+ VAKG + +A Sbjct: 239 MVKAKLAALRRQRSQGRMMAAVPEATVVVTNPTHYSIALKFDPEVDAAPICVAKGVDEVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++R+IA E ++P+ E P LAR+LF + +P ++AVA++I + Sbjct: 299 LRIREIAKESDVPLVESPPLARALFATAELEQVVPREHFEAVAKVISFVMR 349 >gi|218896703|ref|YP_002445114.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus G9842] gi|218542717|gb|ACK95111.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus G9842] Length = 348 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|268316329|ref|YP_003290048.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252] gi|262333863|gb|ACY47660.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252] Length = 360 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 103/349 (29%), Positives = 178/349 (51%), Gaps = 2/349 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 D K P+ ++++ A EGN S+E S +L L+ L + Sbjct: 3 DRDQKQFDPTPRRLQKAREEGNVFRSQETSAVLLLLGGLLTLALSLPYAYGLMRQFTART 62 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L SA L S ++ L + RL++P L ++ G + Q L + P Sbjct: 63 LMSAPFYPLTSGS-VIGALQEALMVLGRLLVPFFALLLVIAFGVNVWQTGWHPTLKPLLP 121 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R+S G++R++S L N +K+ +KI +VG I + + + +L+ + + +IL Sbjct: 122 KPERISPLRGLQRLFSSRGLFNVLKALLKIAIVGPIAFLVIYRHLPEILELHTHSLEAIL 181 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + ++ L + L+ D + ++ LKM+ QE+KDE +++ G+P++K+R Sbjct: 182 QATGLWMLQLAAYTLGALLLLSAADFAYEKWKYRQDLKMTAQEVKDEHRETEGDPMVKSR 241 Query: 246 Q-KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + K R ++ A R+ ++ITNPTHYA+ALRY +E AP ++AKG A ++R Sbjct: 242 RLKKARELARRRRLDHAVLRSDVVITNPTHYAVALRYDPSEAPAPRVLAKGIRKRALRIR 301 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A EH IP+ E+P LAR+L+ VP IP Y AVA ++ +IY ++ Sbjct: 302 ALALEHGIPVVEDPPLARALYHNVPEEQEIPEELYLAVATILAEIYRQR 350 >gi|300117307|ref|ZP_07055097.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1] gi|298725142|gb|EFI65794.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1] Length = 348 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHSFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT ++ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFVVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|258404720|ref|YP_003197462.1| flagellar biosynthesis protein FlhB [Desulfohalobium retbaense DSM 5692] gi|257796947|gb|ACV67884.1| flagellar biosynthetic protein FlhB [Desulfohalobium retbaense DSM 5692] Length = 354 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 182/353 (51%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ + +TE P+ K+ + EG S+E + + L+ ++ + + Sbjct: 1 MA-QQGDEERTEEPTEKRRREFREEGKVAQSKEVNTALLLSTALLLWFWYAPNFVEGLER 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A + +V L + L+ P L+L ++ G S IQ + + Sbjct: 60 FLAGFWDQAGYWNV-TPQAVVGWLGKGLIHLGLLLSPILILSIVVGFLSSYIQFGWLFSP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P K++ +G + S + + +KS K+ +VG++ +L++++ + I Sbjct: 119 KALQPDIKKLDPIQGAAKFVSKRSAMELLKSLAKVAVVGSVAYWTLSDHFEQAIQLIGQP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I +T ++L+ + + + V+D ++ + ++KM+K+E++DE K++ G+P Sbjct: 179 IERIFVFIGWTAAEILLKCCIALLFIAVIDFAYTKWEMEEQMKMTKKELQDEHKETEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +SI R R +MM +A ++ITNPTHYA+ALRY ++ +AP + AKG N++A Sbjct: 239 QLKQRMRSIQRDMARKRMMAEVPQADVVITNPTHYAVALRYDRSSMEAPEVTAKGSNIVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R+IA E +P+ E P +AR L + + +P YKAVA+++ +Y K Sbjct: 299 QRIREIAEESGVPLVENPPVARVLHG-LELGETVPESMYKAVAEILAYVYSLK 350 >gi|229155340|ref|ZP_04283450.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342] gi|228628055|gb|EEK84772.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342] Length = 348 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|229121321|ref|ZP_04250552.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201] gi|228662166|gb|EEL17775.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201] Length = 348 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 178/348 (51%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E IP+ E LARSL+ QV + IP Y AV +++ + K Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344 >gi|319764528|ref|YP_004128465.1| type iii secretion exporter [Alicycliphilus denitrificans BC] gi|330826744|ref|YP_004390047.1| type III secretion exporter [Alicycliphilus denitrificans K601] gi|317119089|gb|ADV01578.1| type III secretion exporter [Alicycliphilus denitrificans BC] gi|329312116|gb|AEB86531.1| type III secretion exporter [Alicycliphilus denitrificans K601] Length = 386 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 162/349 (46%), Gaps = 1/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +K + +K++ A ++G A SR+ S + + + LL + + L Sbjct: 2 SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGTGALALLVLAPWFVEYLQRALRQ 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L ++ ++ L ++ LL + S + + +L + Sbjct: 62 QLV-FNAATVQMPGEMLSRLRTMAGVGLLASAAFALLTSGAALLSAIGAGGWIFSLKPIT 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ G ++S + N K + ++ + + + M + Sbjct: 121 PQFNRLNPLSGFANLFSKQQMANVAKMVLMTGILAAVAWNFMGRSIEQMAALVLQPSPLS 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L HA + + ++LL + V+D+ + S+LKMS +E+K E K+S GNP +K Sbjct: 181 LRHAGQWIVSGMSLLLLVVFLFAVIDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 RQ+ AR + A +A ++ NPTHYA+AL+Y + AP +V+KG +L+A ++R Sbjct: 241 RQRQRAREIADRASIAAVPKADFVVMNPTHYAVALKYDEASMGAPQVVSKGTDLLAFRIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++A +H +P+ + P LAR+L+ + IP Y AVAQ++ +Y K Sbjct: 301 ELAQQHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349 >gi|320187319|gb|EFW62016.1| Flagellar biosynthesis protein FlhB [Shigella flexneri CDC 796-83] Length = 341 Score = 315 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 167/309 (54%) Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104 + +++F + S + ++D + I+ + L A ++P + ++ Sbjct: 1 MCVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVL 60 Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 + S ++ V + ++P F +++ GIKR++S +K+ +K ILVG++ Sbjct: 61 VALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGF 120 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 L ++ M+ ++ +P + + +A V ++++L + + D+ + KL+M Sbjct: 121 FLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRM 180 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 S+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + Sbjct: 181 SRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDEN 240 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+ Sbjct: 241 KMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAE 300 Query: 345 LIYKIYHKK 353 ++ I+ K Sbjct: 301 VLAWIWQLK 309 >gi|94495442|ref|ZP_01302022.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58] gi|94424830|gb|EAT09851.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58] Length = 378 Score = 315 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 2/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ KTE P+ KK++DA +G+ SRE ++A I L P + Sbjct: 1 MAGGSEGGEKTEKPTPKKLQDAAKKGDILQSRELGTALVVMAG-IGCLAVIGPSLIDALR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 D+ V + + D S L L+ S + V +L + I + + Sbjct: 60 DMLVEALRIRREDIVDFSPAKRGLDLLA-SIALPVAGVMLATFLAAIAAPALLGSLGFRP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P ++++ G+KRI+ + L+ +KS K+ L+G+I + + + A Sbjct: 119 GAFAPKPEKLNPLSGLKRIFGMQGLIELLKSIAKVGLLGSIGVWLIWDRLTEITGLGKAG 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +++ + + +D+ Q +L MSKQE+KDE K+S G+P Sbjct: 179 IAPAIADVGNIFIFTCLVMAGGLFLIAGIDVPAQIMQRAKRLGMSKQEVKDEHKESEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + +A + A++IITNPTH+A+ALRY ++ APV+VAKG + IA Sbjct: 239 ELKGHIRRRQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVAKGCDAIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +R +A H + + + P LAR+++ + Y AVA ++ ++ Sbjct: 299 ASIRDLADTHGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349 >gi|294084388|ref|YP_003551146.1| flagellar protein flhB [Candidatus Puniceispirillum marinum IMCC1322] gi|292663961|gb|ADE39062.1| Flagellar protein FlhB [Candidatus Puniceispirillum marinum IMCC1322] Length = 385 Score = 315 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 90/358 (25%), Positives = 170/358 (47%), Gaps = 11/358 (3%) Query: 1 MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E + KTE PS +K+E A +G S+EA +F+++ ++ ++ S +T Sbjct: 1 MAEESSDGQEKTEDPSERKLEKAREDGQVLSSKEAFVFTTLAMAVVLMMGLSSVSSAGLT 60 Query: 60 SDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + +A +V + + ++ + +P +++ + + Sbjct: 61 HWGTLFRWDNADHIDTLAFGKLVQSFWMIIIISTIIGVPMMIVTLFTQLAV----GGVNF 116 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + R++ G+KR++S +LV KS +K++L+ + + + ++L Sbjct: 117 APKSMAFKANRINPISGLKRMFSAKSLVELGKSILKVVLLFGVAGLLIYGQLPSILRLSE 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + +L +L+ + + +D W + KLKMS+QE KDE KQ+ G Sbjct: 177 GTLNGAIEKMGDVFPALLGAMLIVLFIIAAIDYSWQSYSHTKKLKMSRQEQKDEHKQTEG 236 Query: 239 NPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 +P +K + + + + + + +E + AT IITNPTH+A+AL+Y+ E APV++A Sbjct: 237 SPEVKAKIRRMQMEQSQASSQQRESLENVADATAIITNPTHFAVALKYVAGEAGAPVVLA 296 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 G+ IA+++ + A + I I P LAR+LF I I Y AVA + IY Sbjct: 297 MGKGRIAEQIIERANDSKITIMRSPLLARALFFTSDIGGEISEKLYNAVAIALAYIYR 354 >gi|228920479|ref|ZP_04083824.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229189867|ref|ZP_04316877.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876] gi|228593541|gb|EEK51350.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876] gi|228839109|gb|EEM84405.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 348 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|83944181|ref|ZP_00956637.1| flagella-associated protein [Sulfitobacter sp. EE-36] gi|83955118|ref|ZP_00963774.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1] gi|83840447|gb|EAP79620.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1] gi|83845048|gb|EAP82929.1| flagella-associated protein [Sulfitobacter sp. EE-36] Length = 375 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 101/357 (28%), Positives = 178/357 (49%), Gaps = 4/357 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN KT P+ KK++DA +G+ P S+E ++A L + Sbjct: 1 MAENSDSTEKTLEPTEKKLKDARKKGDVPSSKETGNMVVVVAMLGIAALVLPYQAPQIVV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLS----LSASRLVIPGLLLFMMFGIGSYLIQRIP 116 L VLL + + V L + V+P + + G +IQ Sbjct: 61 ALSVLLDHSPNLMVATGEPGVIRLGQIMSEFFYMIVWAVLPIFGVLFLGGAIGAVIQGET 120 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 V+ +KP ++S EG+KR++S N LV F KS VK++ +G + E + Sbjct: 121 VVAAERIKPKLSKLSPLEGLKRLFSANALVEFAKSIVKVLAIGGLAVWFTNEAVRRIWTS 180 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 P + + K+LI + + + + DI W W K +MS+++IKDE K+S Sbjct: 181 SGFIPEHLPGYLTAAAVKLLIAAAILLVPIAIADILWRRFDWRRKQRMSQKDIKDEHKES 240 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P I+ ++ R + + + A A +I+TNPTHY++AL+Y ++ APV +AKG Sbjct: 241 EGSPEIRQKRARRRRELSQQRTITAVPLADVILTNPTHYSIALKYDPAQDMAPVCIAKGA 300 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A+++R++A EH+IP+ E L R L+ ++ ++ IP ++ VA++I ++ + Sbjct: 301 DHLARRIREVAAEHDIPMIENKPLTRMLYDEIDVDQVIPVAHWEIVAEIISFVFDLR 357 >gi|228984854|ref|ZP_04145024.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090732|ref|ZP_04221965.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42] gi|228692674|gb|EEL46400.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42] gi|228774804|gb|EEM23200.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 348 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYMMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|312884592|ref|ZP_07744296.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC BAA-2122] gi|309367904|gb|EFP95452.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC BAA-2122] Length = 346 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 158/341 (46%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+I+DA +G S E + Y L + ++ + + + S Sbjct: 3 EKTEKPTQKRIKDARKKGQVVKSVEIVTGFQMAIICGYFLVEGQGLMEAIWKMIDIAIHS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 S +V ++ L + L+L + F S L+Q P+L +KPSF Sbjct: 63 INLPLKVAASSVVGAFVYIMLRFISGLAALLVLTVAF---SCLVQTGPLLATESLKPSFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++++ K I+S+ ++ K+ +K++++ + L ++ + + Sbjct: 120 KINVINNAKNIFSMKSIFELCKNMLKVLVLSLVFYYLLHQHVNMFQYLPTCGAECGVEVI 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + L+ D + + Q +LKMSK++ K E K++ GNP +K +++ Sbjct: 180 STLLKWLWTAFLICYVIFAAADYAFVHFQTMKQLKMSKEDTKQEYKETEGNPEVKQKRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R + ++T+++ NPTH A+ L Y E P+++ K Q +A ++A Sbjct: 240 LQRETANGSLATNVKKSTVVVRNPTHIAVCLYYNPDEAPVPIVLDKAQEHMALHTVELAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +H+IP+ E LAR+L+ QV IP ++ VA+L+ + Sbjct: 300 KHSIPLIENIPLARALYHQVEPGQLIPESLFEPVAELLRVV 340 >gi|218233750|ref|YP_002366454.1| flagellar biosynthesis protein FlhB [Bacillus cereus B4264] gi|218161707|gb|ACK61699.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus B4264] Length = 348 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIREIKFIFLSILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|163939579|ref|YP_001644463.1| flagellar biosynthesis protein FlhB [Bacillus weihenstephanensis KBAB4] gi|163861776|gb|ABY42835.1| type III secretion exporter [Bacillus weihenstephanensis KBAB4] Length = 348 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 177/348 (50%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E IP+ E LARSL+ QV + IP Y AV +++ + K Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344 >gi|47565438|ref|ZP_00236479.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241] gi|47557428|gb|EAL15755.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241] Length = 348 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|229178177|ref|ZP_04305548.1| Flagellar biosynthetic protein [Bacillus cereus 172560W] gi|228605307|gb|EEK62757.1| Flagellar biosynthetic protein [Bacillus cereus 172560W] Length = 348 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FNQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|206970587|ref|ZP_03231539.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH1134] gi|228952152|ref|ZP_04114244.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043525|ref|ZP_04191234.1| Flagellar biosynthetic protein [Bacillus cereus AH676] gi|229069320|ref|ZP_04202610.1| Flagellar biosynthetic protein [Bacillus cereus F65185] gi|229109225|ref|ZP_04238824.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15] gi|229144382|ref|ZP_04272787.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24] gi|229149974|ref|ZP_04278200.1| Flagellar biosynthetic protein [Bacillus cereus m1550] gi|206734223|gb|EDZ51393.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH1134] gi|228633496|gb|EEK90099.1| Flagellar biosynthetic protein [Bacillus cereus m1550] gi|228639013|gb|EEK95438.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24] gi|228674235|gb|EEL29480.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15] gi|228713807|gb|EEL65692.1| Flagellar biosynthetic protein [Bacillus cereus F65185] gi|228725747|gb|EEL76995.1| Flagellar biosynthetic protein [Bacillus cereus AH676] gi|228807506|gb|EEM54033.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 348 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|324325787|gb|ADY21047.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 348 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYMMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|229160731|ref|ZP_04288723.1| Flagellar biosynthetic protein [Bacillus cereus R309803] gi|228622746|gb|EEK79580.1| Flagellar biosynthetic protein [Bacillus cereus R309803] Length = 348 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 180/348 (51%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E IP+ E LARSL+ QV + AIP Y AV +++ + K Sbjct: 297 LAREQEIPMLENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTK 344 >gi|30261773|ref|NP_844150.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Ames] gi|49184607|ref|YP_027859.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Sterne] gi|49480930|ref|YP_035888.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143694|ref|YP_083139.1| flagellar biosynthesis protein FlhB [Bacillus cereus E33L] gi|65319050|ref|ZP_00392009.1| COG1377: Flagellar biosynthesis pathway, component FlhB [Bacillus anthracis str. A2012] gi|118477201|ref|YP_894352.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis str. Al Hakam] gi|165869563|ref|ZP_02214222.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0488] gi|167633408|ref|ZP_02391733.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0442] gi|167638766|ref|ZP_02397041.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0193] gi|170686249|ref|ZP_02877471.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0465] gi|170706530|ref|ZP_02896990.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0389] gi|177650578|ref|ZP_02933545.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0174] gi|190566254|ref|ZP_03019172.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis Tsiankovskii-I] gi|196033476|ref|ZP_03100888.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W] gi|218902883|ref|YP_002450717.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH820] gi|225863627|ref|YP_002749005.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB102] gi|227815458|ref|YP_002815467.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. CDC 684] gi|228914347|ref|ZP_04077962.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926805|ref|ZP_04089873.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933053|ref|ZP_04095916.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229183961|ref|ZP_04311176.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1] gi|229602417|ref|YP_002866162.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0248] gi|254683271|ref|ZP_05147132.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. CNEVA-9066] gi|254723854|ref|ZP_05185640.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. A1055] gi|254734624|ref|ZP_05192336.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Western North America USA6153] gi|254741033|ref|ZP_05198721.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Kruger B] gi|254755276|ref|ZP_05207310.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Vollum] gi|254759812|ref|ZP_05211836.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Australia 94] gi|291612214|ref|YP_003541028.1| flagellar biosynthetic protein FlhB [Bacillus anthracis str. 'Ames Ancestor'] gi|301053307|ref|YP_003791518.1| flagellar biosynthesis protein [Bacillus anthracis CI] gi|30256001|gb|AAP25636.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. Ames] gi|47502154|gb|AAT30830.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. 'Ames Ancestor'] gi|49178534|gb|AAT53910.1| flagellar biosynthetic protein FlhB, putative [Bacillus anthracis str. Sterne] gi|49332486|gb|AAT63132.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977163|gb|AAU18713.1| flagellar biosynthetic protein [Bacillus cereus E33L] gi|118416426|gb|ABK84845.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al Hakam] gi|164715003|gb|EDR20521.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0488] gi|167513230|gb|EDR88601.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0193] gi|167531446|gb|EDR94124.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0442] gi|170128628|gb|EDS97495.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0389] gi|170669946|gb|EDT20687.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0465] gi|172083722|gb|EDT68782.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0174] gi|190562389|gb|EDV16356.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis Tsiankovskii-I] gi|195993910|gb|EDX57866.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W] gi|218539660|gb|ACK92058.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH820] gi|225789484|gb|ACO29701.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus 03BB102] gi|227006512|gb|ACP16255.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. CDC 684] gi|228599486|gb|EEK57091.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1] gi|228826654|gb|EEM72425.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832918|gb|EEM78487.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845341|gb|EEM90377.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266825|gb|ACQ48462.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis str. A0248] gi|300375476|gb|ADK04380.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis str. CI] Length = 348 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|219681611|ref|YP_002467997.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682168|ref|YP_002468552.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471297|ref|ZP_05635296.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621901|gb|ACL30057.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624454|gb|ACL30609.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085981|gb|ADP66063.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087137|gb|ADP67217.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087673|gb|ADP67752.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 383 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 182/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + KTE P+ +I +G SRE S +L I L ++ + + + + Sbjct: 3 HNTNEEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGFINLWWYRDLIVLNFSKIMS 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L + ++++ +L L P L+ ++ I ++ LN + Sbjct: 63 DSFLFESNDFLNNNNNLLKILMSL-KEILFSFFPFLISLLIVIIIPPILFSGISLNFRSL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +F +++ G KR++S +V F K +K+ +V I L ++ +L ++AN S Sbjct: 122 TLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVS 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L H + + +++L + + DI W +Y KLKM++QE+KDE+K+ GNP IK Sbjct: 182 SLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKEGNPNIK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + ++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG A K+ Sbjct: 242 MRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A +HNI I PSLARSL++ I IP YKAVA+++ ++ + Sbjct: 302 QNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351 >gi|152975183|ref|YP_001374700.1| flagellar biosynthesis protein FlhB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023935|gb|ABS21705.1| type III secretion exporter [Bacillus cytotoxicus NVH 391-98] Length = 348 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 181/348 (52%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ +P +L F + +Y+IQ + + +KP Sbjct: 62 FNQIGKN-----ADTTEYFYLMGILLLKVSVPVFILVYAFHLFNYMIQVGFLFSSKIIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS ++L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDIVKSLFYMVLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKLIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ALRY + + AP++VAKG++ +A MR Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVALRYNKHVDAAPIVVAKGEDELALYMRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E IP+ E LARSL+ QV + AIP Y AV +++ + K Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTK 344 >gi|110615403|gb|ABF04070.1| putative part of export apparatus for flagellar proteins [Shigella flexneri 5 str. 8401] Length = 358 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 86/311 (27%), Positives = 166/311 (53%) Query: 43 CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 + +++F + S + ++D + I+ + L A ++P + Sbjct: 1 MGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGV 60 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162 ++ + S ++ V + ++P F +++ GIKRI+S +K+ +K ILVG++ Sbjct: 61 VLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVT 120 Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 L ++ M+ ++ +P + + +A V ++++L + + D+ + KL Sbjct: 121 GFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKL 180 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 +MS+Q+I+DE KQS G+P +K R + R+ R +MM +A +I+ NPTHY++AL+Y Sbjct: 181 RMSRQDIRDEFKQSEGDPHVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYD 240 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AV Sbjct: 241 ENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAV 300 Query: 343 AQLIYKIYHKK 353 A+++ ++ K Sbjct: 301 AEVLAWVWQLK 311 >gi|315648120|ref|ZP_07901221.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] gi|315276766|gb|EFU40109.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] Length = 316 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 84/310 (27%), Positives = 160/310 (51%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103 L ++L F + T L + +++ L + L+ P + Sbjct: 3 LFFVLLIFGGYMRDHTVRLFTDVYINRLSMDVTKDNVMQLFGEYGIQILLLLAPLFISIF 62 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 + + S +Q +L +K F+++ +G K I+S+ +LV F+KS +K+ ++G ++ Sbjct: 63 VIALISNYLQVGFMLTGEPLKMKFEKLDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVY 122 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 +L + + P +I + + I + + L VLD + + + ++ Sbjct: 123 STLWAAREGLSSLSTMGPDAIFHFVADITMSLGFKIAIGLIILAVLDYMYQRYDYEKNIR 182 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSKQ+IKDE K+ G+P+IK + + R +MM+ A +IITNPTH+A+A++Y Sbjct: 183 MSKQDIKDEYKKMEGDPLIKGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDG 242 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 + +AP ++AKGQ+ +A ++++IA EH I E LAR+L+++ I +IP ++AVA Sbjct: 243 SMMEAPQIIAKGQDFMALRIKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVA 302 Query: 344 QLIYKIYHKK 353 +++ +Y K Sbjct: 303 EVLAYVYKLK 312 >gi|239907023|ref|YP_002953764.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1] gi|239796889|dbj|BAH75878.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1] Length = 357 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 172/351 (49%), Gaps = 6/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ + + KTE + K+ A +G+ P S+E + ++A L + F + Sbjct: 1 MARDPS---KTEKATPKRESKAREKGSVPRSQELPKLTVLMAGLFTVRFTLGNINEQLQE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + L+ LS + +++P LL+ + + +Q V Sbjct: 58 VFRTFLGGRLDFT-ATTDDVAALMWSLSAKLAIMLLPLLLVMAVVAFVTQRLQVGEVWRP 116 Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +P F + + G++R+ S LVN K + + + L + + L Sbjct: 117 KIFEPDFSNIVNPMRGLQRLLISAQTLVNLAKQTAMAFAISLVPYLILRKRFNEFLPLFY 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + +I +++ LL + + +LD+ ++ + LKM+K E+KDE KQS+G Sbjct: 177 QSVDNIALFLLDNGFDMVLYTLLPMFVIAILDVWYTRWDYAENLKMTKDEVKDEHKQSFG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K +QK ++ +M++ +A ++ITNPTH A ALRY E+ AP+L+AKG + Sbjct: 237 DPHVKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHIACALRYNPLESPAPMLLAKGADF 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +A+K++ IA EH +PI E LA++L+K V I IP Y+AVA ++ ++ Sbjct: 297 MAEKIKDIAKEHKVPIRENKPLAQALYKNVEIGQVIPEDLYQAVASILAQL 347 >gi|228958050|ref|ZP_04119785.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801567|gb|EEM48449.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 348 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQ 342 >gi|229078951|ref|ZP_04211503.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2] gi|228704365|gb|EEL56799.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2] Length = 348 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FNQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|218663130|ref|ZP_03519060.1| flagellar biosynthesis protein FlhB [Rhizobium etli IE4771] Length = 360 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 216/351 (61%), Gaps = 2/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + ++ Sbjct: 1 MADDD-KDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGRMSE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPVLN 119 L + Q K+E ++ L L + + L+ P +L M+FG L + Sbjct: 60 TLRDIFEQPDQWKIETGPDVLALFVRLGWAIAALLAPAFILLMVFGHRIVDLPEPADACA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 N + + + K+++VG I+ L YF +D + + Sbjct: 120 GNASDRRLRASRRPRAGHGSSACLASSSSESPLFKVVVVGVILFFVLRSEYFGSIDAMFS 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P +IL +RK++I++L+ A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+ Sbjct: 180 DPQTILVRMMTAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LI Sbjct: 240 PFVKGRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 A K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 300 ALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 350 >gi|260767693|ref|ZP_05876628.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|260617202|gb|EEX42386.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972] gi|315179475|gb|ADT86389.1| flagellar biosynthesis protein FlhB [Vibrio furnissii NCTC 11218] Length = 339 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 162/315 (51%), Gaps = 1/315 (0%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 ++ + L++F + + + L + ++ ++ D++ + +++ ++ ++ Sbjct: 1 MLVVGALSLMWFGDALARGLYAAMGRLF-NLSREEIFDVNKLFDIVSGAMVNLILPLLLI 59 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 L+ + + + P F +++ G+KR++ + + V +KS +K++LV Sbjct: 60 LITLFVAALIGAAGVGGINFSAEAAMPKFSKMNPLSGLKRMFGLQSWVELLKSILKVLLV 119 Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 + + + + ++HA + +++I + + +D+ + Q Sbjct: 120 AGVAFYLIEASKQDLFQLSLDTFPQNIFHALDILLNFVLLISCSLLVVVAIDVPFQIWQH 179 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 ++LKM+KQE+KDE K + G P +K R + + R + +MM +A +IITNP H+++A Sbjct: 180 ANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVA 239 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 LRY Q + APV+VAKG + +A K+R++A EH+I I P LAR+L+ + IP Sbjct: 240 LRYKQNTDRAPVVVAKGIDHLALKIREVAREHDIMIIPAPPLARALYHTTELEQEIPDGL 299 Query: 339 YKAVAQLIYKIYHKK 353 + AVAQ++ ++ K Sbjct: 300 FVAVAQVLAYVFQLK 314 >gi|120609156|ref|YP_968834.1| type III secretion system protein HrcU [Acidovorax citrulli AAC00-1] gi|58700626|gb|AAW81017.1| HrcU [Acidovorax citrulli] gi|120587620|gb|ABM31060.1| type III secretion protein, YscU/HrpY family [Acidovorax citrulli AAC00-1] Length = 352 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + + A L+ L V + L Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTALEQ 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 63 GVR--VHSTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGQIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 H+IP+ P LAR+L K +P++ IP ++AV+ ++ + Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340 >gi|224419239|ref|ZP_03657245.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT 98-5491] gi|253826957|ref|ZP_04869842.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313142741|ref|ZP_07804934.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT 98-5491] gi|253510363|gb|EES89022.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313131772|gb|EFR49389.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT 98-5491] Length = 357 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 179/354 (50%), Gaps = 11/354 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57 M++ + KTEAPS++KIE A EGN S + + F ++ L+ + F+ G+ + Sbjct: 1 MADE---EEKTEAPSARKIEKAREEGNVIKSPDVNAFLGLVVGLVLIFLCFNFWVDGLSA 57 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + +++ + R S+ + L L L+ P M+ GI + + Q + Sbjct: 58 IFFEVYHIFNQDLTR-----SNAISLTISLVFKILYLLAPIFGALMLIGIVANISQSGFL 112 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 L ++P ++++ G+K I S+ L++ K++ I + Sbjct: 113 LTTKAIQPKLQKLNFISGLKNIISLKKLLDGFLITFKVLTAFIIAFFVFLGFMKELTTVS 172 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + ++ ++L F + + D +Q++ L+MSKQE+KDE K Sbjct: 173 LFPIGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQE 232 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+ +K + +S+ + +MM+ A +++TNPTHYA+ALRY T+ AP ++AKG + Sbjct: 233 GDQQVKGKIRSLMFQAAKKRMMQNIPNADVVVTNPTHYAVALRYDSTKERAPRVLAKGVD 292 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A+++++IA E+ IPI E P LAR+L+K V I+ IP Y+A+ +++ K+ Sbjct: 293 FLAQRIKEIAKENEIPIIENPPLARALYKDVDIDKEIPETLYQAMVEILIKVQQ 346 >gi|74311773|ref|YP_310192.1| flagellar biosynthesis protein FlhB [Shigella sonnei Ss046] gi|73855250|gb|AAZ87957.1| putative part of export apparatus for flagellar proteins [Shigella sonnei Ss046] Length = 323 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 157/283 (55%) Query: 71 QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130 D + I+ + L A ++P + ++ + S ++ V + ++P F ++ Sbjct: 9 HYIFNDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKL 68 Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190 + GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A Sbjct: 69 NPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPTTAMGNAMD 128 Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + + Sbjct: 129 LVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQ 188 Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310 R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+ Sbjct: 189 RAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAEN 248 Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 249 NVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 291 >gi|311086556|gb|ADP66637.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 383 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 182/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + KTE P+ +I +G SRE S +L I L ++ + + + + Sbjct: 3 HNTNEEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGSINLWWYRDLIVLNFSKIMS 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L + ++++ +L L P L+ ++ I ++ LN + Sbjct: 63 DSFLFESNDFLNNNNNLLKILMSL-KEILFSFFPFLISLLIVIIIPPILFSGISLNFRSL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +F +++ G KR++S +V F K +K+ +V I L ++ +L ++AN S Sbjct: 122 TLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVS 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L H + + +++L + + DI W +Y KLKM++QE+KDE+K+ GNP IK Sbjct: 182 SLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKEGNPNIK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + ++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG A K+ Sbjct: 242 MRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A +HNI I PSLARSL++ I IP YKAVA+++ ++ + Sbjct: 302 QNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351 >gi|229029449|ref|ZP_04185532.1| Flagellar biosynthetic protein [Bacillus cereus AH1271] gi|228731908|gb|EEL82807.1| Flagellar biosynthetic protein [Bacillus cereus AH1271] Length = 348 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|328958267|ref|YP_004375653.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4] gi|328674591|gb|AEB30637.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4] Length = 355 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 91/354 (25%), Positives = 178/354 (50%), Gaps = 7/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-YSVT 59 M+E D KTE S KK+ D +G P S + + + + ++ F + + YS+ Sbjct: 1 MAEKDG---KTEKASPKKLRDTRKKGEIPKSPDLTSAVTFIVFILTATFLGNYILKYSLL 57 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + L A T LE+ ++ + + L P L + + ++Q + + Sbjct: 58 YLQNYLSAEFTVNGLEN--NLADIGMKSIVFVLILAGPFLAIAFAAAFIASILQTGFLFS 115 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 +K +++ G K ++S L +K+ K+ LV + +L + + +L+ + Sbjct: 116 AEPIKFKLSKINPISGFKNMFSKKTLFTMIKNVAKLTLVFWMAYKTLETSAYLILNSSNV 175 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + V ++ + + + L ++D + + + LKMSKQE+KDE K+S G+ Sbjct: 176 GTEKLFFLMSDLVLELGTQLGVLLLILGLVDYIYQVYDYRKNLKMSKQELKDEFKESEGD 235 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK++++ R + + + AT IITNPTH A+A+RY + +++ P++VAKG + Sbjct: 236 PQIKSQRRQRYRQLTKGAL-QDVETATAIITNPTHLAIAIRYEKGKDEVPIIVAKGADYQ 294 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R+ A ++PI E +AR+++K V I +P Y+A+A+++ +Y + Sbjct: 295 AAKIRERAKAFDVPIIENKPVARAMYKTVEIGQPVPVDLYQAIAEILALVYQME 348 >gi|326315337|ref|YP_004233009.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372173|gb|ADX44442.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 352 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + + A L+ L V + L Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 63 GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGKIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 H+IP+ P LAR+L K +P++ IP ++AV+ ++ + Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340 >gi|30019814|ref|NP_831445.1| flagellar biosynthesis protein FlhB [Bacillus cereus ATCC 14579] gi|229127096|ref|ZP_04256093.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4] gi|29895359|gb|AAP08646.1| Flagellar biosynthetic protein flhB [Bacillus cereus ATCC 14579] gi|228656212|gb|EEL12053.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4] Length = 348 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G I + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYIAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQ 342 >gi|163742549|ref|ZP_02149935.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis 2.10] gi|161384134|gb|EDQ08517.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis 2.10] Length = 359 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 163/349 (46%), Gaps = 3/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ K+ P+ +K+E A +G P S + ++ +S L +I + + + + + Sbjct: 1 MSDDDSD--KSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIIAIYVSGADVVEELGT 58 Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L + L + + ++ +P ++ M + S + QR V Sbjct: 59 ILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRALVFA 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P ++S+ K + + L F KS VK++L + + L M+ + Sbjct: 119 PSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGVYLNYRLPDMIASSAT 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 ++ + LI+ L+ + V+D + + K MS+QEI DE K++ G+ Sbjct: 179 GAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDESKEAEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++ A + + + A ++I NPTHYA+AL++ + APV VAKG + + Sbjct: 239 PHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPVCVAKGVDEV 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +R++A E+ +PI +P AR+L V I I Y VA I Sbjct: 299 AAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAIRF 347 >gi|290893976|ref|ZP_06556951.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-071] gi|290556422|gb|EFD89961.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-071] Length = 348 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + +L+ ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +KS + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKSLLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|332096673|gb|EGJ01664.1| flagellar biosynthetic protein FlhB [Shigella boydii 3594-74] Length = 343 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 86/311 (27%), Positives = 167/311 (53%) Query: 43 CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 + +++F + S + ++D + I+ + L A ++P + Sbjct: 1 MGVCVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGV 60 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162 ++ + S ++ V + ++P F +++ GIKR++S +K+ +K ILVG++ Sbjct: 61 VLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 120 Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 L ++ M+ ++ +P + + +A V ++++L + + D+ + KL Sbjct: 121 GFFLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKL 180 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 +MS+Q+I+DE KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y Sbjct: 181 RMSRQDIRDEFKQSEGDPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYD 240 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AV Sbjct: 241 ENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAV 300 Query: 343 AQLIYKIYHKK 353 A+++ I+ K Sbjct: 301 AEVLAWIWQLK 311 >gi|315281330|ref|ZP_07869978.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120] gi|313615028|gb|EFR88524.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120] Length = 348 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 99/341 (29%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + +L+ ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPKLANMESYSLFYLM-----EFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ LV +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|299822255|ref|ZP_07054141.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601] gi|299815784|gb|EFI83022.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601] Length = 348 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE P+ ++I+ A EGN S+E + S+L + FF I ++ + L Sbjct: 2 AKDNKTEKPTPRRIKKAREEGNVAKSKELNNAFSLLIVAGMIFFFGKWWIGNMVTAFKAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + F+L ++++P +++ ++ GI +Y +Q + + +KP Sbjct: 62 LEQPPTLGNASSYSLFFIL-----QFGKVLLPVMVMVLVIGILNYAVQVGFLFSAKSIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + + T++ F N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSAVAYKGFQSHLQTLISFTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + + L I + +LD + +++ L+MSKQ+IK+E+K S G P +K R Sbjct: 177 RQILQLFKNEFLALFLIIVVIGLLDFLYQRYEYKKGLRMSKQDIKEEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R+ Sbjct: 237 QRSIARGLLQGAITKKMLDATFVVNNPTHISVVMRYDKGKDHAPKLLAKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA IP+ +AR ++ I Y AV +++ ++ K+ Sbjct: 297 IAETDGIPMITNRQVARMIYYSTNEEEYIQEDLYAAVIEIMKELMDKE 344 >gi|229096254|ref|ZP_04227227.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29] gi|229115209|ref|ZP_04244619.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3] gi|228668349|gb|EEL23781.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3] gi|228687214|gb|EEL41119.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29] Length = 348 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKS-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|163738055|ref|ZP_02145471.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis BS107] gi|161388671|gb|EDQ13024.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis BS107] Length = 359 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 163/349 (46%), Gaps = 3/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D+ K+ P+ +K+E A +G P S + ++ +S L ++ + + + + + Sbjct: 1 MSDDDSD--KSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIVAIYVSGADVVEELGT 58 Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L + L + + ++ +P ++ M + S + QR V Sbjct: 59 ILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRALVFA 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P ++S+ K + + L F KS VK++L + I L M+ + Sbjct: 119 PSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGIYLNYRLPDMIASSAT 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 ++ + LI+ L+ + V+D + + K MS+QEI DE K++ G+ Sbjct: 179 GAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDESKEAEGD 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++ A + + + A ++I NPTHYA+AL++ + AP+ VAKG + + Sbjct: 239 PHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPICVAKGVDEV 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +R++A E+ +PI +P AR+L V I I Y VA I Sbjct: 299 AAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAIRF 347 >gi|15616856|ref|NP_240069.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386798|sp|P57334|FLHB_BUCAI RecName: Full=Flagellar biosynthetic protein flhB gi|25322197|pir||C84958 flagellar biosynthetic protein flhB [imported] - Buchnera sp. (strain APS) gi|10038920|dbj|BAB12955.1| flagellar biosynthetic protein flhB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 383 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 182/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + KTE P+ +I +G SRE S +L I L ++ + + + + Sbjct: 3 HNTNEEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGFINLWWYRDLIVLNFSKIMS 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L + ++++ +L L P L+ ++ I ++ LN + Sbjct: 63 DSFLFESNDFLNNNNNLLKILMSL-KEILFSFFPFLISLLIVIIIPPILFSGISLNFRSL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +F +++ G KR++S +V F K +K+ +V I L ++ +L ++AN S Sbjct: 122 TLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVS 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L H + + +++L + + DI W +Y KLKM++QE++DE+K+ GNP IK Sbjct: 182 SLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMRDELKEKEGNPNIK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + ++ +R +M+ T +A +IITNP HY++AL+Y + +AP ++AKG A K+ Sbjct: 242 MRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A +HNI I PSLARSL++ I IP YKAVA+++ ++ + Sbjct: 302 QNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351 >gi|229172415|ref|ZP_04299974.1| Flagellar biosynthetic protein [Bacillus cereus MM3] gi|228610886|gb|EEK68149.1| Flagellar biosynthetic protein [Bacillus cereus MM3] Length = 348 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ +P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSVPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|89111188|dbj|BAE80277.1| HrcU [Acidovorax avenae subsp. avenae] Length = 352 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + + A L+ L V + L Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 63 GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 H+IP+ P LAR+L K +P++ IP ++AV+ ++ + Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340 >gi|229102368|ref|ZP_04233076.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28] gi|228681015|gb|EEL35184.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28] Length = 348 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASF 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|167567199|ref|ZP_02360115.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis EO147] Length = 375 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 155/353 (43%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+ D K+E + +K++ A +G P SR+ S +L + LL + + Sbjct: 1 MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +LA ++ + ++ + + A VIP + I L V Sbjct: 60 LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASV------IAGSLFPGGWVFAS 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + KP R+S + ++ S + F S K + ++ L + Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAFAIIAVLWHVSASTLPAFLRLQALP 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H + + L I +D+ + + +M+KQE+KDE K + G P Sbjct: 174 LPEAIAHGARLFVDGAMTLALVILAFASMDVPFQRFVFMRGQRMTKQEVKDEHKNNEGRP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ R + + R + + + A ++I NPTHYA+AL+Y DAP ++AKG + +A Sbjct: 234 EVRGRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGVDDMA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A H + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 294 LVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346 >gi|171915731|ref|ZP_02931201.1| Type III secretory pathway, component EscU [Verrucomicrobium spinosum DSM 4136] Length = 347 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 85/345 (24%), Positives = 178/345 (51%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ KK+ DA +G S++ + +A + + + + +L +L Sbjct: 3 EKNEPPTPKKLRDARKKGQVAKSQDVGTAALTIASFVTIGIMWPSMVEQ-AKELILLPVQ 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + S + L+ + + +P L++ M+ G+ + Q +L +KP K Sbjct: 62 YYDKPFQQGS--MELMLAIGRKVLLMSLPILMVVMVVGLAAGFGQIGFMLTFEPLKPELK 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ + K+I+S+ +LV +KS +K+ ++G II + + S+L Sbjct: 120 KLNPMDKAKQIFSMKSLVELLKSTIKVGVIGIIIYYVTKASLDPLTRLPYGGEESVLTAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + +++ + D + +Q +LKMSK E+K E K+S GNP IK ++K Sbjct: 180 QPMIKALTMNVVMAYIIIAAADFFFQKYQHIKQLKMSKDEVKREYKESEGNPEIKGKRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +A+ + M T +A++++TNPTH A+A+ Y + ++ P ++AKG++ +A++M ++A Sbjct: 240 LAQEAAQSDTMGRTRKASVVVTNPTHLAIAIYYDENDDKMPRVLAKGEDHVARRMVEVAR 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E IP+ + LAR+L++ V I+ +P + +A+++ + K Sbjct: 300 EEGIPVMQHVPLARALYENVDIDRFVPSDLIEPMAEVLRWVQEWK 344 >gi|325567516|ref|ZP_08144183.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus ATCC 12755] gi|325158949|gb|EGC71095.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus ATCC 12755] Length = 355 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE PS+K++ DA G P ++E + S+L +L + S Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LA + ++ + L L L P L+ + G+ + Q + + Sbjct: 58 YFSQSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP FK+++ GIK+ +S+ +L+N K+ K ++ + +L Sbjct: 117 KAIKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y + Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348 >gi|257866393|ref|ZP_05646046.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC30] gi|257873091|ref|ZP_05652744.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC10] gi|257800351|gb|EEV29379.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC30] gi|257807255|gb|EEV36077.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC10] Length = 355 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE PS+K++ DA G P ++E + S+L +L + S Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LA + ++ + L L L P L+ + G+ + Q + + Sbjct: 58 YFSRSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 VKP FK+++ GIK+ +S+ +L+N K+ K ++ + +L Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y + Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348 >gi|167574623|ref|ZP_02367497.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis C6786] Length = 375 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 156/353 (44%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D+ D K+E + +K++ A +G P SR+ S +L + LL + + Sbjct: 1 MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +LA ++ + ++ + + A VIP + I L V Sbjct: 60 LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASV------IAGSLFPGGWVFAS 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + KP R+S + ++ S + F S K + ++ L + Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAFAIIAVLWHVSASTLPAFLRLQALP 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + H + + L I +D+ + + +M+KQE+KDE K + G P Sbjct: 174 LPEAIAHGARLFVDGAMTLALVILAFASMDVPFQRFVFMRGQRMTKQEVKDEHKNNEGRP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++R + + R + + + A ++I NPTHYA+AL+Y DAP ++AKG + +A Sbjct: 234 EVRSRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGVDDMA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A H + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 294 LVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346 >gi|300024611|ref|YP_003757222.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC 51888] gi|299526432|gb|ADJ24901.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC 51888] Length = 360 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 125/349 (35%), Positives = 213/349 (61%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D ++TE + KK+ DA N+GN P SRE F ++A L+ + + S Sbjct: 1 MSEQD-QQSRTEEATDKKLLDARNDGNVPSSREVPNFLYLMAALLVIAVLGQTFASHLGS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LLA+A +L + ++ L + +A+ + P +L F G+ + + Q P+ Sbjct: 60 LLVGLLANAGSIRLGNGGDVMLLFDVVGKAAAVVTAPIILAFGAAGVIASVAQNPPIPIA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P R+S +G+KR++S++ L F+K +++++V L + + I + Sbjct: 120 KRVIPDISRLSPAKGLKRMFSLSGLFEFLKLSLRLVVVVVTSVAILMYMWHDFTNSIWND 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P +IL + +V +LI + L TL + D+ ++ W L+M++QEIKDE KQ G+P Sbjct: 180 PSAILTLSQKSVVALLISLALMSFTLLIFDLPVAHVLWRRSLRMARQEIKDEQKQMEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K R++SIA++R R +M++ S+ATI+I NPTH+A+ALRY+++E AP +VAKGQ+LIA Sbjct: 240 LMKARRRSIAKARSRQRMLKGVSKATIVIANPTHFAVALRYVRSEGGAPRVVAKGQDLIA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 K+R+IA E+ IP+ E+ +LARSL+ +V ++ IP FY+A+A+++ ++ Sbjct: 300 LKIRRIAEENAIPVIEDKALARSLYAKVEVDQMIPAEFYRAIAEILIRL 348 >gi|257876006|ref|ZP_05655659.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC20] gi|257810172|gb|EEV38992.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus EC20] Length = 355 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE PS+K++ DA G P ++E + S+L +L + S Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LA + ++ + L L L P L+ + G+ + Q + + Sbjct: 58 YFSRSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 VKP FK+++ GIK+ +S+ +L+N K+ K ++ + +L Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLSKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIVLAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y + Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348 >gi|257871304|ref|ZP_05650957.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2] gi|257805468|gb|EEV34290.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2] Length = 355 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE PS+K++ DA G P ++E + S+L L + S Sbjct: 1 MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLTLSLWQFFAASFLP 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LA + ++ + L L L P L+ + G+ + Q + + Sbjct: 58 YFSRSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 VKP FK+++ GIK+ +S+ +L+N K+ K ++ + +L Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +++ + I +F+ L V+D G+ + L MSKQE+K+E KQ G+P Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++K+ R+ ++ + AT++ITNPTH+A+A+RY + P ++AKG + +A Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++M+ A + NIP E +AR+L++QV IP Y+A+A++I +Y + Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348 >gi|89111155|dbj|BAE80245.1| HrcU [Acidovorax avenae subsp. avenae] Length = 352 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G S++ + + A L+ L V + L Sbjct: 3 EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ LL+ ++L + +++ ++ + + L Q ++ + P F Sbjct: 63 GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+K++++ +LV F KS +K ++ G ++ +T ++ + P + A Sbjct: 121 SLNPAEGLKKMFNARSLVEFSKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + K+ L + LD G + + +MSK ++K E K S G+P +K KS Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFVRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + E AT+++TNPTHYA+ALRY P++VAKG + A +R +A Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 H+IP+ P LAR+L K +P++ IP ++AV+ ++ + Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340 >gi|206974845|ref|ZP_03235760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus H3081.97] gi|217959252|ref|YP_002337800.1| flagellar biosynthesis protein FlhB [Bacillus cereus AH187] gi|206746864|gb|EDZ58256.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus H3081.97] gi|217068144|gb|ACJ82394.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus AH187] Length = 348 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 179/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342 >gi|302387776|ref|YP_003823598.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum WM1] gi|302198404|gb|ADL05975.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum WM1] Length = 353 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 185/348 (53%), Gaps = 3/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK D +G+ +S++ + +S+L + L F ++ + + Sbjct: 2 AGDSKTEKATPKKRRDERKKGHVAVSKDVVMVASLLGIFMMLKLLFPFMYKTLRNYMIKY 61 Query: 66 LA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++ + L D + ++ ++ + P LL ++ + + +Q + +++ Sbjct: 62 ISLAPAAETLSDYTTKAYM--DTVIAVLKACFPILLAAVLLAVIATGVQTRFLFTKSNLA 119 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ +GIK I S+ +LV +KS +KII++ I+ + + + I Sbjct: 120 PKFDRLNPLQGIKNILSVKSLVELIKSLIKIIILILILYQIIKGDLRAVARTIDMELQDS 179 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + +++I + + + D + + + +++MSKQE+K+E KQ+ GNP IK Sbjct: 180 AVYVLNAILEMIIKVSIVFLAIAGFDFFYQWWDFERQIRMSKQELKEEYKQTEGNPEIKG 239 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R ++I R R R +MM+A A +I+ NPTHYA+ALRY +++APVLVAKGQ+ +A ++ Sbjct: 240 RIRNIQRERARSRMMQAVPTADVIVRNPTHYAVALRYNIEKDNAPVLVAKGQDELALRIV 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + E+ + + E LAR ++ + + IPP +Y VA+++ +Y Sbjct: 300 AVGEENGVYVLENKPLARGIYAGTQVGAEIPPEYYGMVAEILVYVYRM 347 >gi|323165329|gb|EFZ51117.1| flagellar biosynthetic protein FlhB [Shigella sonnei 53G] Length = 319 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 157/283 (55%) Query: 71 QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130 D + I+ + L A ++P + ++ + S ++ V + ++P F ++ Sbjct: 5 HYIFNDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKL 64 Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190 + GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A Sbjct: 65 NPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPTTAMGNAMD 124 Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + + Sbjct: 125 LVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQ 184 Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310 R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+ Sbjct: 185 RAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAEN 244 Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 245 NVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 287 >gi|78776868|ref|YP_393183.1| flagellar biosynthesis protein FlhB [Sulfurimonas denitrificans DSM 1251] gi|78497408|gb|ABB43948.1| Flagellar biosynthetic protein FlhB [Sulfurimonas denitrificans DSM 1251] Length = 350 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 179/352 (50%), Gaps = 5/352 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+SKKIEDA EGN P S++AS ++ ++ L F + + S Sbjct: 1 MADD---AEKTEEPTSKKIEDARKEGNVPKSQDASGVMTLFVAILAFLMLFPYMLSHILS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + D + ++ + +++P + + G+ + + Q + Sbjct: 58 IFKYYFSLIGMTI--DRALMLDIAIVTIKEIFLIIMPLSIAVAIAGVIAAISQFGFLFTT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K++ +G+K ++S+ L++ +K K I + + Sbjct: 116 KSITPDLKKLDPIKGMKNLFSMKKLIDGIKITFKSFTTLGIGFVFFFLFIMELPTVALFG 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++LL I V+DI Q++ LKMSKQEIKDE+K G+P Sbjct: 176 FTDQMIWLRDKAIIIAFVMLLIIFIFAVIDIVIVRKQYFDGLKMSKQEIKDEMKNMDGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK + + I R +MM A A ++ITNPTHYA+A++Y + ++ AP++VAKG + IA Sbjct: 236 LIKGKIRQIQMEASRKRMMSAVPEADVVITNPTHYAVAIKYDEQKSHAPIVVAKGMDNIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++++KIA E+ + I + P LARSL+ +V ++ IP + AVA+++ IY Sbjct: 296 QQIKKIARENGVHIVQNPPLARSLYAEVELDKPIPSELFGAVAEVLAYIYKM 347 >gi|304408584|ref|ZP_07390205.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS183] gi|307305412|ref|ZP_07585160.1| type III secretion protein, YscU/HrpY family [Shewanella baltica BA175] gi|304352405|gb|EFM16802.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS183] gi|306911715|gb|EFN42140.1| type III secretion protein, YscU/HrpY family [Shewanella baltica BA175] Length = 349 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 148/341 (43%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K++ +A N G S E + L Y L+ + ++ + L L + Sbjct: 3 EKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMA-LIDLTIN 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A LE + ++ ++ A R + L+ + + L+Q PV + PS Sbjct: 62 AINLPLETAAE--QIVGTFAMLALRFLGGLTLVLVFTIVVGNLVQTGPVWATESIMPSMN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++++ K++ S+ +L K+ VK+ ++ + L + Sbjct: 120 KLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCGEACGISVI 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + D + + +LKMSK + K E K S GNP +K +++ Sbjct: 180 STMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + +AT+++ NPTH A+ L Y + E P ++ K ++ +A + +A Sbjct: 240 TQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + +PI E LAR+LFK V IP ++ VA+L+ + Sbjct: 300 KAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLV 340 >gi|229132597|ref|ZP_04261445.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196] gi|228650829|gb|EEL06816.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196] Length = 348 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDRAIPEDLYVAVIEVMRYLIQ 342 >gi|16802721|ref|NP_464206.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes EGD-e] gi|46906930|ref|YP_013319.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes serotype 4b str. F2365] gi|47091642|ref|ZP_00229438.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 4b H7858] gi|47095244|ref|ZP_00232855.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 1/2a F6854] gi|217965223|ref|YP_002350901.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|224498762|ref|ZP_03667111.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes Finland 1988] gi|224502016|ref|ZP_03670323.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL R2-561] gi|226223310|ref|YP_002757417.1| flagellar biosynthetic protein flhB [Listeria monocytogenes Clip81459] gi|254824041|ref|ZP_05229042.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-194] gi|254829336|ref|ZP_05234023.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL N3-165] gi|254830330|ref|ZP_05234985.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 10403S] gi|254900085|ref|ZP_05260009.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes J0161] gi|254911362|ref|ZP_05261374.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932041|ref|ZP_05265400.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes HPB2262] gi|254935689|ref|ZP_05267386.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900] gi|254992440|ref|ZP_05274630.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-064] gi|255521624|ref|ZP_05388861.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-175] gi|284801009|ref|YP_003412874.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5578] gi|284994151|ref|YP_003415919.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5923] gi|16410068|emb|CAC98757.1| lmo0679 [Listeria monocytogenes EGD-e] gi|46880196|gb|AAT03496.1| putative flagellar biosynthetic protein flhB [Listeria monocytogenes serotype 4b str. F2365] gi|47016315|gb|EAL07237.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019961|gb|EAL10698.1| flagellar biosynthetic protein flhB, putative [Listeria monocytogenes str. 4b H7858] gi|217334493|gb|ACK40287.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|225875772|emb|CAS04475.1| Putative flagellar biosynthetic protein flhB [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601748|gb|EEW15073.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL N3-165] gi|258608271|gb|EEW20879.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900] gi|284056571|gb|ADB67512.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5578] gi|284059618|gb|ADB70557.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 08-5923] gi|293583594|gb|EFF95626.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes HPB2262] gi|293589298|gb|EFF97632.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293593270|gb|EFG01031.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-194] gi|307570218|emb|CAR83397.1| flagellar biosynthetic protein [Listeria monocytogenes L99] gi|328467248|gb|EGF38328.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 1816] gi|328475644|gb|EGF46393.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 220] gi|332311104|gb|EGJ24199.1| Flagellar biosynthesis protein [Listeria monocytogenes str. Scott A] Length = 348 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + +L+ ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|309388837|gb|ADO76717.1| flagellar biosynthetic protein FlhB [Halanaerobium praevalens DSM 2228] Length = 352 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 174/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D KTE P+SK+ ++A EGN +E ++LA ++L F + V + Sbjct: 1 MAD-DGTGEKTEEPTSKRKKEAKEEGNVAKGKEIGQAITLLASFMFLYFLMQQIFFGVLN 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + I +L S + P +++ GI +Q + Sbjct: 60 EIQYYFKNLIIEPF-TIKMTFEILYDAFFSVIEKIYPIMIVTAAAGILVNFLQIGALFTT 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P K+V +G K I+S+ +V +KS K+ L+ I L N I+ Sbjct: 119 KPLVPDLKKVDPIKGAKNIFSLKGVVELLKSLFKLALIAVIAYHFLMGNLDIFQKSINQG 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++ +++ + L +LD+ + Q LKMSK E+K E K+ G+P Sbjct: 179 LEEALSAIAHLISRMAFAVIIALIILGILDLLYQRWQHNKDLKMSKYEVKQERKEMEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +I+ ++K R ++MM + A ++ITNPTH A+AL Y E +APV+VAKG++ +A Sbjct: 239 MIQQQRKRRQREMSMNRMMSSVKDADVVITNPTHIAVALEYDLEEMEAPVIVAKGEDFVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+++ A E + I E LARSL K I +P Y+AVA+++ +I+ + Sbjct: 299 QKIKEKAREAEVKIIENKPLARSLNKMSEIGDQVPIELYQAVAEILAEIFKNR 351 >gi|289548904|ref|YP_003473892.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484] gi|289182521|gb|ADC89765.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484] Length = 349 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 +++TE + + EG+ S + S+L + L YS+ S + Sbjct: 3 EESRTERATPYRRRKLREEGHVAKSTDLVASLSLLVITVSLYLVGPQLYYSLLSIFYT-- 60 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 ++ LL S ++ ++L + I ++L Q V L ++ Sbjct: 61 -----APTLSVTEHPTLLRFFVEKVSPYILSLMVLSTLTVILAHLGQFGVVFTLKPLRFR 115 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++R++ EGIKR+ S+ L K+ +KI ++ + + L + +++ + H + Sbjct: 116 WERLNPVEGIKRLLSLTTLFELFKNTLKIGILLFTVYLFLRTEIYRLMESVLLPLHISIL 175 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 K+ I++ + LD+ + + K++M+KQE+K+E KQ GNP++K Sbjct: 176 DVMGLTLKLFIILGTLAIIMASLDLLYRRWDYERKIRMTKQEVKEEYKQHEGNPMVKGAI 235 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMRK 305 + R + +M++ +AT++ITNPTH A+ALRY + APV++AKG IA+++ Sbjct: 236 RKRMRQLAKGRMIKEVPKATVVITNPTHVAVALRYDPSGGDRAPVVLAKGVGQIAERIIN 295 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +A E+ +PI + LARSL++ + IPP FY+AVA++I I Sbjct: 296 VAREYGVPIVRKEELARSLYRWAEVGEEIPPRFYRAVAEIIAFIL 340 >gi|229017055|ref|ZP_04173974.1| Flagellar biosynthetic protein [Bacillus cereus AH1273] gi|229023236|ref|ZP_04179746.1| Flagellar biosynthetic protein [Bacillus cereus AH1272] gi|228738030|gb|EEL88516.1| Flagellar biosynthetic protein [Bacillus cereus AH1272] gi|228744228|gb|EEL94311.1| Flagellar biosynthetic protein [Bacillus cereus AH1273] Length = 348 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 179/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + L Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + L + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDVTEYLYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHALLQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342 >gi|296534146|ref|ZP_06896642.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] gi|296265522|gb|EFH11651.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] Length = 353 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 95/357 (26%), Positives = 182/357 (50%), Gaps = 11/357 (3%) Query: 1 MSEND----APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY 56 M+E + + K PS K+ A G P++REA +S+ L +F + Sbjct: 1 MAEKEGPGGDSEEKELDPSEAKLRKARESGEVPLAREAVQLASLCGGAFALSWFGPALGH 60 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 + L A + + + + L+ +++ A+ L + L + L Q Sbjct: 61 HMVEQGRSLFALSHEARWQ------LELSEMAVRAAPLALGVAGLAATGAVVVTLAQTRL 114 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 +++ + P+ ++S G+KR++ LV F ++ +K++ G + + Sbjct: 115 LVSAKPLAPNPMKLSPLRGLKRMFGPQALVEFGRAMLKVVACGLAMWWVSDGITERLPQT 174 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 ++ + A + ++L LL + ++D+GW + K++MS+QE+KDE+K+S Sbjct: 175 LALPLEELGGLAAELIERLLRGALLAFTVVALVDLGWVRLRHMQKMRMSRQEMKDEMKES 234 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P I+ R++ IA R R + M +AT+I+TNPTHYA+AL Y + + AP +VA+G Sbjct: 235 EGDPHIRGRRRQIALRRSRSRAMAEVPKATVIVTNPTHYAVALSYRRGIDAAPRVVARGV 294 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + +A ++R+ A +H +P+ P LAR+L++ V + IP ++AVA+LI ++ + Sbjct: 295 DSMAARIRREAEKHGVPVLPNPPLARALYR-VEEGAQIPAEHFEAVAELIALVWKLR 350 >gi|242309640|ref|ZP_04808795.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT 98-5489] gi|239523641|gb|EEQ63507.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT 98-5489] Length = 354 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 176/351 (50%), Gaps = 6/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + KTEAPS++KIE A EGN S + + F ++ L+ + F+ + +++ Sbjct: 1 MAD----EEKTEAPSARKIEKAREEGNVLKSPDVNAFLGLVVGLVLIFLCFNFWVDGISN 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S Q S + + L+ L+ P ++ GI + + Q +L Sbjct: 57 IFFQIYNSFNQDLTR--SDAISITISLTFQILYLLAPIFGALVLTGIVANISQSGFLLTT 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P ++++ GIK I S+ L++ K++ I + Sbjct: 115 KAIQPKLQKLNFITGIKNIISLKKLLDGFLITFKVMTAFIIAFFVFLGFMKELTTVSLFP 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ ++L F + + D +Q++ L+MSKQE+KDE K G+ Sbjct: 175 IGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQEGDQ 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + +S+ + +MM+ A +++TNPTHYA+ALRY T+ AP ++AKG + +A Sbjct: 235 QIKGKIRSLMFQAAKKRMMQNIPSADVVVTNPTHYAVALRYDSTKERAPRVLAKGVDFLA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++++ IA EH IPI E P LAR+L+K V I+ IP Y+A+ +++ K+ Sbjct: 295 QRIKDIAKEHEIPIIENPPLARALYKDVDIDKEIPETLYQAMIEVLIKVQQ 345 >gi|116872068|ref|YP_848849.1| flagellar biosynthesis protein FlhB [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740946|emb|CAK20066.1| flagellar biosynthetic protein FlhB, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 348 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + +L+ ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYAVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|161503484|ref|YP_001570596.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864831|gb|ABX21454.1| hypothetical protein SARI_01560 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 351 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 152/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y F I + ++ L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALFLYFHFLTEKVILRIIELINFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + + L S + G+++ + + +Q V+ + Sbjct: 63 INKPFSYALTQLSYSLVDSLSSVILFLGAGIIISTVASV---FLQVGVVIASKAIGFKSD 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I+ T L Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSTLKVIILSLILAFFFYYYVSTFRALPYCGLACALPVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 FCLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVDLARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|39545582|gb|AAR26329.1| AscU [Aeromonas hydrophila] Length = 352 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 3/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + IL+ + L+ + + + L Sbjct: 2 SGEKTELPTPKKLRDARKKGQVVKSKEVVSTAIILSLIGMLMAMSDYYLEHLGKLM---L 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + L + +L +L + L IP L + ++ + S+ Q +L+ +KP Sbjct: 59 IPESHLNLPFTQALNHVLENLMQEMAYLCIPLLGVSVLVVLISHFAQYGFLLSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ I++ N +L I Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWITIEGNLQALLQLPGCGMSCIPP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++ Sbjct: 179 VLGGMLSQLMAVCAMGFVVIAIADYAFEHYQHTKQLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M R+++I+ NPTH A+ +RY + E PV+ K + A ++RKI Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E IP+ + LAR+L++ IN+ IP +A A+++ + + Sbjct: 299 AEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVLRWLEQWR 345 >gi|332159965|ref|YP_004296542.1| type III secretion protein, YscU/HrpY family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607483|emb|CBY28981.1| type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] gi|325664195|gb|ADZ40839.1| Type III secretion protein, YscU/HrpY family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862410|emb|CBX72569.1| secretion system apparatus protein ssaU [Yersinia enterocolitica W22703] Length = 358 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 152/342 (44%), Gaps = 5/342 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + K E P++K++ +A +G S E + ++ + Y + I + + Sbjct: 1 MSGESS--EKNEKPTAKRLREAREKGQVIKSVEITSGMQLVVLVAYFFLVGNTIIDQIGA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + Q ++ I T + + ++ L+L I + + Q P+ Sbjct: 59 LIRSTINQLQQPFTFALARIGSECTAVLIHIVGILGGALIL---MTIIAGIAQVGPLFAT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V + ++ + K+++S+ +L +KS +K+ ++ I L + + Sbjct: 116 KAVAFKSEHINPIDNAKQLFSLRSLFELIKSLLKVGVLTLIFGYLLAQYATSFGYLAYCG 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + +L ++ ++LD + ++ +LKMS +E+K E K S G+P Sbjct: 176 SSCAIPVFGTLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK +++ + + + R+T I+ NPTH+A+ L Y + P+++ KG+ A Sbjct: 236 HIKQKRRQLQQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGERA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + K+A + IPI E +LAR+L + V IP ++ V Sbjct: 296 ALIIKLAEQQGIPIVENIALARALHRDVVCGDTIPETLFEPV 337 >gi|196039022|ref|ZP_03106329.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus NVH0597-99] gi|196030167|gb|EDX68767.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus NVH0597-99] Length = 348 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342 >gi|296502370|ref|YP_003664070.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171] gi|296323422|gb|ADH06350.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171] Length = 348 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342 >gi|254475662|ref|ZP_05089048.1| type III secretion exporter [Ruegeria sp. R11] gi|214029905|gb|EEB70740.1| type III secretion exporter [Ruegeria sp. R11] Length = 360 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 2/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D D K+ P+ +KI A +G+ P S + S+ ++ L +I + + + S Sbjct: 1 MSQDDDSD-KSYEPTPEKIRKAREKGDVPKSTDLSVAAAYLGLIIVVYTSGEDMVRDMGS 59 Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + L + +L + + L S + + P ++ I S + QR V Sbjct: 60 LMMSFLDQPDRHAELFFSDNGTPPVGGLLKSVASAMAPMFIIPAAAVILSLVGQRALVFA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P R+S+ K + + L F KS VK+IL + I L M+ + Sbjct: 120 PSKLEPKLSRISIMSNAKNKFGMTGLFEFAKSTVKLILFSVCMGIYLNYRLPDMIASAAT 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 ++ + +++ L+ + V+D + + K MS++EI DE+K S G+ Sbjct: 180 GAFVVVTMLGQLAIEFMVLALIIALAVGVVDAAFQQADFTRKNMMSRKEIMDEMKNSEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++ A+ ++ + A ++I NPTHYA+AL++ + APV V+KG + + Sbjct: 240 PHMKGARRQKAQQIAMSAGVQDVATADVVIVNPTHYAVALKWDRQPGQAPVCVSKGVDEV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +R++A E+ +PI +P AR+L V I I Y VA I Sbjct: 300 AAIIREVANENGVPIHSDPPTARALHAAVEIGDEIHEEHYAPVAAAIRF 348 >gi|222095392|ref|YP_002529452.1| flagellar biosynthesis protein flhb [Bacillus cereus Q1] gi|228945372|ref|ZP_04107727.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|221239450|gb|ACM12160.1| flagellar biosynthetic protein [Bacillus cereus Q1] gi|228814344|gb|EEM60610.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 348 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342 >gi|83647785|ref|YP_436220.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC 2396] gi|83635828|gb|ABC31795.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC 2396] Length = 351 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S++ ++I A + LL + ++ + + Sbjct: 2 SDEKTEKPTPKKLRDARKKGQVAHSKDVVSTATICAMFLLLLATSDTYLSHLSILIELPA 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + LE + +V ++ L + + + M I + +Q + + +KP Sbjct: 62 QYMDRPFLEALPMVV---DNVIYELIYLTLMPVGVVMASAILANFLQVGALFAVESLKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG K+I+ + N + F+KS +K+ ++ ++ + + +N I Sbjct: 119 LKKLNPVEGFKKIFCVKNFIEFIKSLIKVGVLSYLVYMLIKDNLNDSARLHYCEVECIPD 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++++++ + L D Q+ + KMSK E+K E KQ G+P IK ++ Sbjct: 179 FVGTLLKQLILYSAITFIALAAADFFIQKQQFIKQQKMSKDEVKREYKQMEGSPEIKGKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K I R + + + + I+TNPTH A+ + Y + D P ++ KG + +AK +RKI Sbjct: 239 KQIHREMMNTSIPAQVKKCSAIVTNPTHLAVGIYYEKGVEDVPKVMVKGADQMAKVIRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E IP+ E LAR L+K+ +N +PP ++AVA ++ + Sbjct: 299 AEEEGIPMMENVPLARGLWKRAQVNDYVPPDLFEAVAAVLQWV 341 >gi|74101643|gb|AAZ99733.1| FlhBL [Aeromonas hydrophila] Length = 378 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+N A D KTE SS+K+ A EG S+E S +L + + + P + Sbjct: 1 MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQ-WMVPSFGHFFA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + D ++ LS +++P + + ++ VL Sbjct: 59 ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + PS ++++ +G+KR++S ++L+ +KS +KI+L+G+ + + L + ++ Sbjct: 119 KKLLPSAEKLNPLKGLKRMFSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + A + + I++ + VLD+ + +L+M+KQE+KDE K S G P Sbjct: 179 PQAAMEQALRILSQAFILLGSVQMLIAVLDVPYQRWSLNKQLRMTKQEVKDEHKNSEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R ++ + +A +II NPTHYA+A++Y +AP ++AKG + +A Sbjct: 239 EIKAKIRQVQGMLARARIEQRVPQADVIIVNPTHYAVAIKYDPERANAPYVIAKGVDGMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R++A +H+ + P L R+++ ++ +P Y AVA ++ + + Sbjct: 299 ERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVAYVLNHVLQLR 351 >gi|42525573|ref|NP_970671.1| flagellar biosynthesis protein FlhB [Treponema denticola ATCC 35405] gi|13122809|gb|AAK12645.1|AF232219_4 FlhB [Treponema denticola] gi|41815584|gb|AAS10552.1| flagellar biosynthetic protein FlhB [Treponema denticola ATCC 35405] Length = 390 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 174/352 (49%), Gaps = 8/352 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ KI A EG S++ + +L +I L+ S+ + Sbjct: 33 EDEGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIMGPYIFKSLMQVIAFF 92 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124 T + + + L + V P + ++ G+ +IQ + + ++ Sbjct: 93 FERCTTEDVVNGT----WFRIFVLYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQ 148 Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P FKRV+ KR ++S L N KS K++++G I + + N M+ + ++ Sbjct: 149 PDFKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDF 208 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + + T ++L+ + + L++ D + Q+ LKMSK E+ DE K+ G+P+ Sbjct: 209 PNSIIFIAKTAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPM 268 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K + ++ ++ ++ A ++ITNPTHYA+AL++ Q AP++++KG + A+ Sbjct: 269 VKAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGIMPAPMVISKGVDATAQ 328 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+NIP E LAR+L+ V + IP +Y++++ + KIY K Sbjct: 329 NIKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYQSLSIIFLKIYSMK 380 >gi|163781850|ref|ZP_02176850.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1] gi|159883070|gb|EDP76574.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 184/349 (52%), Gaps = 4/349 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A +NKTE + + EGN S E + S+L + + F G + L Sbjct: 2 AQENKTEKATPYRRRKLKQEGNVAKSVEIASSLSVLISSLIIFFT---GALIFKEVVAFL 58 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 +A + R E + S +L++P ++ ++ IG+++ Q + L ++ Sbjct: 59 IAISGLRPAEFSILAGTTIKDSFTSIVKLLVPFFVVTILVVIGAHVAQFGFIFTLKPLQF 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 ++R++ EGIK++ SI L K+ +K L+ I L + +L+ + Sbjct: 119 KWERLNPVEGIKKMVSITTLFELSKNTLKASLLFGIALFILKGSVSLILNSAQMPLLEGV 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + KV++++ + + +LD + + +++MSKQE+K+E KQ G P +K + Sbjct: 179 NFLIDLLIKVVLILGVIAFLIALLDFAYKKWDYERRIRMSKQEVKEEFKQLEGQPEVKAK 238 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K+ R R +MM +A+++ITNPTHYA+ALRY ++ APV+VAKG+ +A+++ K Sbjct: 239 VKARMREMARGRMMAEVPKASVVITNPTHYAIALRYDAEKDRAPVVVAKGKGTLAERIIK 298 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI-YHKK 353 +A E+ +P+ +P LAR+++ V + IPP FY+AVA++I I + KK Sbjct: 299 VAEENEVPVIRKPELARAMYSAVDVGDEIPPEFYRAVAEIIAFITFRKK 347 >gi|312602783|ref|YP_004022628.1| type III secretion inner membrane protein SctU [Burkholderia rhizoxinica HKI 454] gi|306431586|emb|CBK52138.1| type III secretion inner membrane protein SctU [Burkholderia rhizoxinica HKI 454] gi|312170097|emb|CBW77109.1| type III secretion inner membrane protein SctU [Burkholderia rhizoxinica HKI 454] Length = 360 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ K++ DA +G S + + + + A + L+ S + + +H L Sbjct: 2 SDEKTEEPTEKRLRDARRDGQVAKSTDLTDAAVMCASIAVLVAAASMFTDAFRALIHTTL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 T + + +V L + +++P + + + Q ++ V P+ Sbjct: 62 DFVTTNRSNTM--LVASAFKLGRQSLTIIVPCVAATALCAFAALFAQVGFQISTKPVTPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 V+ GIKRI+S+ +V+ KS +K LV ++ ++ + + + Sbjct: 120 PTAVNPASGIKRIFSLRTVVDMTKSLLKAALVACVMWYTIRGLIPLIATSLYQPLPELSR 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + K+ L + LD + +++MSK EIK E KQ G+P +K + Sbjct: 180 LFWTVLLKLFSAAALVFIVIAALDFKLQKFLFTRQMRMSKDEIKREYKQQEGDPQLKGER 239 Query: 247 KSIARSRIRHKMME-ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K IAR + A +I NPTHYA+A+RY E PV++AKG + A ++R+ Sbjct: 240 KRIAREWAQEAPPRLRVGLANALIVNPTHYAVAIRYAPEECPLPVVIAKGHDESAAELRR 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + +PI P +AR+L + V I+ IP ++AVA ++ + Sbjct: 300 YAAQARVPIIGNPPIARALHR-VKIDEPIPEALFEAVAAILRWV 342 >gi|303248000|ref|ZP_07334266.1| type III secretion exporter [Desulfovibrio fructosovorans JJ] gi|302490557|gb|EFL50462.1| type III secretion exporter [Desulfovibrio fructosovorans JJ] Length = 357 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 170/355 (47%), Gaps = 6/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ + + KTE + K+ + A +G+ S+E + + A L + + Sbjct: 1 MARDPS---KTEQATQKRRDKAREKGSVARSQELPKLTVLFAGLFVIRLTIRSLGDDLKE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + + L LS + +++P L++ + + IQ + + Sbjct: 58 VFTLFLGQRLHFE-ATVDAVNALFWMLSGKLAMMLLPLLVVIAIIAFITQRIQVGSIWHS 116 Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +P F + + ++++ + LV K + + + + L Sbjct: 117 KLFEPDFSNLFNPIAALQKLLINPKTLVQLGKQVAMASAIAVAPYLIIKNKFNEFLPLFY 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + S+ +++ L + + VLD+ ++ + LKM+K E+KDE KQ+ G Sbjct: 177 QSTQSLTTFLLENGFTMVLYTLFPMVLIAVLDVWYTRWDYEENLKMTKDEVKDETKQALG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K +Q+ ++ +M++ +A ++ITNPTH A ALRY E+ AP+L+AKG + Sbjct: 237 DPVVKQQQRRKMMEVMQRRMLQDVPKADVVITNPTHLACALRYDPKESPAPLLLAKGADH 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+++IA E+ IPI E LA++L+K V I IP Y+AVA ++ ++ K Sbjct: 297 LAEKIKEIARENRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQLDKFK 351 >gi|152965635|ref|YP_001361419.1| type III secretion exporter [Kineococcus radiotolerans SRS30216] gi|151360152|gb|ABS03155.1| type III secretion exporter [Kineococcus radiotolerans SRS30216] Length = 360 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 168/347 (48%), Gaps = 4/347 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+++A +EGN P SR+ + + S A + + G + + Sbjct: 2 SGEKTEKPTPKKLKEARDEGNIPFSRDVAAWLSTGAGAVTIPHTIESGQVLLRKAFAGVG 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A A + + + L ++ P + + S +Q +KP Sbjct: 62 AVAADPE---PARALAALAATFAGIPGVLGPLAAATVFAVVVSGGVQGTLRPAPKKLKPK 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G K+ + L KS +K +++GT++ + + + S+L Sbjct: 119 FSNLNPVNGFKQHWGPQALWEGTKSLLKTVVIGTVMWLVVKNLVPQFVGSGLMPLASVLT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V K++ + +L + D SY + KL+MSKQ+IK E K + G+P++K Sbjct: 179 LTKGAVVKIVAVTVLLGLIIAAGDYAMSYRRTMKKLRMSKQDIKMEHKNAEGDPLLKGAI 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 +S + R++MM + A +++ NPTH A+ALRY AP +VAKG IA K+R+ Sbjct: 239 RSKQMAMSRNRMMSDVASADVVLVNPTHIAVALRYEPG-TGAPKVVAKGAGAIASKIREK 297 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E+++P+ ++ LAR+++K I IPP F+ AVA+++ + + + Sbjct: 298 AKENDVPLVKDVQLARTMYKSCKIGQEIPPEFFAAVAKVLAFVMNLR 344 >gi|238762378|ref|ZP_04623349.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638] gi|238699363|gb|EEP92109.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638] Length = 377 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 173/353 (49%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS K+E P+S K+ A +G+ P S++ ++ + ++ L+ L F + Sbjct: 1 MS--SNSGEKSEKPTSGKLLKARKKGDIPRSKDVTMAAGLVTSLVTLTLFLPYYKELIGE 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + +A + ++D + + LL + ++ L + I + L+ Sbjct: 59 SFLAVGRTAGR--IDDPAALEQLLLTNLSIFFKFLL-TLTPIPLVSILATLVPSGWNFTP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P FK++S GIK+I+S +N +K K +V + + + + +L + Sbjct: 116 VKLIPDFKKLSPLAGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVNSSLVDLLRLQALP 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + F +L+ + I +DI S + + K+KM+KQE+K E K + GNP Sbjct: 176 LQEAITEGFILYHGILVYFIAIIVIFAAIDIPLSKYLFTKKMKMTKQEVKLEHKSNDGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IKNR + + R ++ + A +IITNPTH+++AL+Y + AP ++AKG++ IA Sbjct: 236 EIKNRVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R IA ++I I E P LAR+++ +N +P Y+A+AQ++ + K Sbjct: 296 LYIRTIAKNNDIEIVEFPPLARAIYHTTKVNQQVPIQLYRAIAQVLTYVMQVK 348 >gi|82543640|ref|YP_407587.1| flagellar biosynthesis protein FlhB [Shigella boydii Sb227] gi|81245051|gb|ABB65759.1| putative part of export apparatus for flagellar proteins [Shigella boydii Sb227] Length = 343 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 86/311 (27%), Positives = 166/311 (53%) Query: 43 CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 + +++F + S + ++D + I+ + L A ++P + Sbjct: 1 MGVCVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGV 60 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162 ++ + S ++ V + ++P F +++ GIKR++S +K+ +K ILVG++ Sbjct: 61 VLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 120 Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 L ++ M+ ++ +P + + +A V ++++L + + D+ + KL Sbjct: 121 GFFLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKL 180 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 +MS+Q+I+DE KQS G P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y Sbjct: 181 RMSRQDIRDEFKQSEGEPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYD 240 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + + AP +VAKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AV Sbjct: 241 ENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAV 300 Query: 343 AQLIYKIYHKK 353 A+++ I+ K Sbjct: 301 AEVLAWIWQLK 311 >gi|167568047|ref|ZP_02360963.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis EO147] Length = 377 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 157/346 (45%), Gaps = 5/346 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S E + + L Y LF + + L+ Sbjct: 3 EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGA----HLLQAFEALVDV 58 Query: 69 ATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + +D + T L R + +L + + + + Q P+L + +KPS Sbjct: 59 SIAVVNDDFAAATARWTSALGAVLIRFTLGMAVLVIAMTVVAAIAQIGPLLAVEALKPSL 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +K+++S+ +L F KS K+ ++ I + + ++ + L Sbjct: 119 DKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIFFYLIRQYAPSLQFLPLCSVECGLAV 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + ++ F + D + + +L MS ++IK E K S GNP IK++++ Sbjct: 179 STQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKHKRR 238 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 I R + +++T+++ NPTH A+ L Y + E P ++ G++ +A + +A Sbjct: 239 EIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIEIGRDKLALHIVALA 298 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +P+ E LAR+L ++ + IPP ++ VA L+ + Sbjct: 299 ERERVPVVENVPLARALANRLDVGQRIPPDLFEPVAHLLRVAMQLR 344 >gi|229011062|ref|ZP_04168256.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048] gi|228750234|gb|EEM00066.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048] Length = 348 Score = 310 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 176/348 (50%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+ +K + Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDQQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E IP+ E LARSL+ QV + IP Y AV +++ + K Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344 >gi|229058418|ref|ZP_04196802.1| Flagellar biosynthetic protein [Bacillus cereus AH603] gi|228719927|gb|EEL71517.1| Flagellar biosynthetic protein [Bacillus cereus AH603] Length = 348 Score = 310 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 177/348 (50%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E IP+ E LARSL+ QV + IP Y AV +++ + K Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344 >gi|228907402|ref|ZP_04071260.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200] gi|228938882|ref|ZP_04101482.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964753|ref|ZP_04125860.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228971763|ref|ZP_04132384.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978372|ref|ZP_04138749.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407] gi|228781389|gb|EEM29590.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407] gi|228787853|gb|EEM35811.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795003|gb|EEM42502.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228820731|gb|EEM66756.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228852263|gb|EEM97059.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200] gi|326939382|gb|AEA15278.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar chinensis CT-43] Length = 348 Score = 310 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A E IP+ E LARSL+ QV + IP Y AV +++ + Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342 >gi|126174201|ref|YP_001050350.1| secretion system apparatus protein SsaU [Shewanella baltica OS155] gi|125997406|gb|ABN61481.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS155] Length = 349 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 147/341 (43%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K++ +A N G S E + L Y L+ + ++ + L L + Sbjct: 3 EKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMA-LIDLTIN 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A LE + ++ ++ A R + L+ + + +Q PV + PS Sbjct: 62 AINLPLETAAE--QIVGTFAMLALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++++ K++ S+ +L K+ VK+ ++ + L + Sbjct: 120 KLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCEEACGISVI 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + D + + +LKMSK + K E K S GNP +K +++ Sbjct: 180 STMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + +AT+++ NPTH A+ L Y + E P ++ K ++ +A + +A Sbjct: 240 TQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + +PI E LAR+LFK V IP ++ VA+L+ + Sbjct: 300 KAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLV 340 >gi|159045796|ref|YP_001534590.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12] gi|157913556|gb|ABV94989.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12] Length = 362 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 164/349 (46%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+++PD+K S KK+ DA +G S + S ++ L+F + + + Sbjct: 1 MSEDESPDDKPFEASEKKLLDARKKGELVKSTDLIATGSYGGLILGLVFAGAGTLTISAA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + LL A E + ++ L L + L M+ I S ++QR V Sbjct: 61 TMQGLLREADTLAPELFAGGASSISLTLILGTVGALSLWFFLPMLGAIASLVLQRALVFA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++P R+S+ K + L F+KS K+++ ++ + TM+ + Sbjct: 121 PTKLEPKLNRISILSNAKNKFGREGLFEFLKSTFKLVVFSILLGLLFMYELDTMISLAAQ 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +I+ F+ + + L ++ L + +D W Q K +MS+QE+ DE K + G+ Sbjct: 181 PVSAIIGFVFYLLIEFLALVFLATLLIGGVDYIWQRAQHLRKNRMSRQEVVDETKSAEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P K ++ A +M+ A++++ NPTHYA+AL++ + AP++VA G + + Sbjct: 241 PHSKQYRRQRAIEIATQQMLADVPDASVVVVNPTHYAVALKWDRFSPTAPIVVASGVDHV 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +R+ A E +PI +P AR+L+ + IP +KAVA I Sbjct: 301 AAAIRQRAQEAGVPIHRDPPTARALYATCKLGQEIPRAQFKAVAAAIRF 349 >gi|229166624|ref|ZP_04294376.1| Flagellar biosynthetic protein [Bacillus cereus AH621] gi|228616878|gb|EEK73951.1| Flagellar biosynthetic protein [Bacillus cereus AH621] Length = 348 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 177/348 (50%), Gaps = 5/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF Y + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K+ + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A E IP+ E LARSL+ QV + IP Y AV +++ + K Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344 >gi|327394193|dbj|BAK11615.1| flagellar biosynthetic protein FlhB [Pantoea ananatis AJ13355] Length = 346 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 87/314 (27%), Positives = 163/314 (51%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 +L I +L+ + + + + D I+ + +L + A ++P L Sbjct: 1 MLLAGIMILWVGGAMMAHRLAAMVSTGLRFDHAMVTDDKIIIAHVGNLIMQAIAALLPLL 60 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 ++ I S ++ V++ +K F +++ G+KR+++ K +K ILVG Sbjct: 61 GGLVLVAIASPMLLGGVVISGKSIKVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVG 120 Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219 + + ++ ML I+ +P + L H + +++L + + D+ W + + Sbjct: 121 CVAGWYVWSHWPDMLRLIAESPTTALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHF 180 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 KL+MS+QEI+DE KQ G+P +K R + R+ R +MM +A +I+TNPTHY++AL Sbjct: 181 KKLRMSRQEIRDEHKQQEGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVAL 240 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 +Y + + AP ++AKG IA ++R++ EH IP+ E P LAR+L++ I IP Y Sbjct: 241 QYNEKKMSAPKVIAKGAGDIALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALY 300 Query: 340 KAVAQLIYKIYHKK 353 AVA+++ ++ + Sbjct: 301 GAVAEVLAWVWQLR 314 >gi|160875393|ref|YP_001554709.1| secretion system apparatus protein SsaU [Shewanella baltica OS195] gi|160860915|gb|ABX49449.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS195] gi|315267593|gb|ADT94446.1| type III secretion protein, YscU/HrpY family [Shewanella baltica OS678] Length = 349 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K++ +A N G S E + L Y L+ + ++ + L L Sbjct: 3 EKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMA-LIDLTIH 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A LE + ++ ++ A R + L+ + + L+Q PV + PS Sbjct: 62 AINLPLETAAE--QIVGTFAVLALRFLGGLTLVLVFTIVVGNLVQTGPVWAAESIMPSMD 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++++ K++ S+ +L K+ VK+ ++ + L + Sbjct: 120 KLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCGEACGISVI 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + D + + +LKMSK + K E K S GNP +K +++ Sbjct: 180 STMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 R + +AT+++ NPTH A+ L Y + E P ++ K ++ +A + +A Sbjct: 240 TQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAEDHMALHIVALAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + +PI E LAR+LFK V IP ++ VA+L+ + Sbjct: 300 KAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELLRLV 340 >gi|300722693|ref|YP_003711983.1| putative flagellar export protein [Xenorhabdus nematophila ATCC 19061] gi|297629200|emb|CBJ89797.1| putative part of export apparatus for flagellar proteins [Xenorhabdus nematophila ATCC 19061] Length = 339 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 84/307 (27%), Positives = 154/307 (50%) Query: 47 LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 +L+ I S + + + + ++ + L A ++P ++ Sbjct: 1 MLWMSGQSITHELSLMVFEGFNFDHNMVSNDKQMLQQVGRLLKQAVWALLPVFAGLVLIA 60 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 + + + + + +K +++ G+K+I+S+N L K+ +K LVG + + Sbjct: 61 LSAPALMGGLLFSSKSIKFDLTKLNPISGLKKIFSMNALAELFKAILKASLVGGGAALFI 120 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 N+ ML+ I+ P L A + +IL + + D+ + KL+M++ Sbjct: 121 WLNWPAMLNLIAQPPLMALNDAVLMMIFASYIILFMLIPMVAFDVLYQIRSHLKKLRMTR 180 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QEIKDE K+ G+P +K R + R+ R +MM +A +I+TNPTHYA+AL+Y + Sbjct: 181 QEIKDEFKEQEGDPHVKARIRQQQRAAARKRMMADVPKADVIVTNPTHYAVALQYDSKKM 240 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP ++AKG LIA +++++ E+ IP+ E P LAR+LF+ + IP Y AVA+++ Sbjct: 241 SAPKVLAKGAGLIALRIKEMGAENRIPLLEAPPLARALFRYAEVGGFIPAALYAAVAEVL 300 Query: 347 YKIYHKK 353 +Y K Sbjct: 301 AWVYQLK 307 >gi|119947198|ref|YP_944878.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37] gi|119865802|gb|ABM05279.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37] Length = 374 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 174/350 (49%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D +KTE S++K++ + EG ++E + +L +Y F I +L Sbjct: 2 SDNAQDKTEQASAQKLKKSKGEGQIARAKEFASACMLLGFCLYFYLSFER-IAEAALNLF 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L S + L+D ++ L + + P + + ++ + L+ V + + Sbjct: 61 KLNFSFSVATLQDNDQMLIRLNKSLFTLIEIFFPFIFVVVLSTLIGSLVLGGWVFSFKTI 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P ++S +GIKR++S+ LV +KS +K+ ++ ++ L+ N ML + Sbjct: 121 QPKLDKLSFLKGIKRMWSLKTLVELIKSILKVAVIVYLLYSFLSNNLLYMLSLQRLPIEA 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + I+ + ++D+ + +++ ++KMSKQE+K+E KQ+ G P +K Sbjct: 181 SSIAVLTKLATYSLYIIAILLLYGLIDLPYQLYEFNKQMKMSKQELKEEHKQAEGRPEVK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + I + + + + A +II NPTHYA+A++Y +AP LVAKG + A + Sbjct: 241 QRIRQIQQQMSQRAITKTVPDADVIIMNPTHYAVAIKYDPKRAEAPFLVAKGNDQTALFI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++IA ++N+ + P+LAR+++ + IP + A+A ++ + + Sbjct: 301 QRIALDNNVEVVISPALARAIYHTTQLEQMIPNQLFVAIAHVLSYVMQLR 350 >gi|325475307|gb|EGC78492.1| FlhB [Treponema denticola F0402] Length = 390 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 174/352 (49%), Gaps = 8/352 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ KI A EG S++ + +L +I L+ S+ + Sbjct: 33 EDEGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIMGPYIFKSLMQVIAFF 92 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124 T + + + L + V P + ++ G+ +IQ + + ++ Sbjct: 93 FERCTTEDVVNGT----WFRIFVLYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQ 148 Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P FKRV+ KR ++S L N KS K++++G I + + N M+ + ++ Sbjct: 149 PDFKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDF 208 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + + T ++L+ + + L++ D + Q+ LKMSK E+ DE K+ G+P+ Sbjct: 209 PNSIIFIAKTAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPM 268 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K + ++ ++ ++ A ++ITNPTHYA+AL++ Q AP++++KG + A+ Sbjct: 269 VKAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGVMPAPMVISKGVDATAQ 328 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++IA E+NIP E LAR+L+ V + IP +YK+++ + KIY K Sbjct: 329 NIKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYKSLSIIFLKIYSMK 380 >gi|237751917|ref|ZP_04582397.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC BAA-430] gi|229376676|gb|EEO26767.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC BAA-430] Length = 354 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 90/351 (25%), Positives = 173/351 (49%), Gaps = 5/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+++KIE A EGN S + + F ++ L + F+ + + S Sbjct: 1 MADD---AEKTEEPTARKIEKAREEGNVLKSPDVNAFLGLVVGLALVFLCFNFWVRGLGS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S +Q ++ + + L L+ P M+ G+ + + Q +L Sbjct: 58 VFEQIYQSFSQE--FTRANAMSITLSLVFQVLYLLAPIFGALMLIGVIANVSQSGFLLTA 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P ++++ G+K + S+ L++ K++ I + Sbjct: 116 KAIQPKLQKLNFITGMKNLISLKKLLDGFLITFKVLSAFIIAFFVFLGFMHELTTVALFP 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ ++L F + +D +Q++ L+MSKQE+KDE K G+ Sbjct: 176 LGDQMLWFRDKAIILIGILLAFFLVMASVDYMIKRYQYFKSLRMSKQEVKDEFKNQEGDQ 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + +S+ R +MM+ A +++TNPTHYA+ALRY + AP ++AKG + +A Sbjct: 236 QVKGKIRSLMFQAARKRMMQNIPSADVVVTNPTHYAVALRYDSKKERAPRVLAKGVDFLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++++IA EH IPI E P LAR+L+K V ++ IP Y+A+ ++ ++ Sbjct: 296 QRIKEIATEHEIPIIENPPLARALYKDVDLDMEIPESLYQAMVNVLLEVKR 346 >gi|300764490|ref|ZP_07074483.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL N1-017] gi|300514844|gb|EFK41898.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL N1-017] Length = 348 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + +L+ ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDEVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|224584067|ref|YP_002637865.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468594|gb|ACN46424.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 352 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGGVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T L Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|126734112|ref|ZP_01749859.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2] gi|126716978|gb|EBA13842.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2] Length = 361 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 167/350 (47%), Gaps = 2/350 (0%) Query: 1 MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS + + +K PS KK++DA +G S + + ++ L+ +L + ++ Sbjct: 1 MSGQEEEDSDKQYEPSQKKLDDARKKGEIARSADLTTAAAYAGLLLAMLTIGPVALLDLS 60 Query: 60 SDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + L +LL + L L + + V P + + I S ++QR + Sbjct: 61 TSLSILLEQSNDLSSLAFAGGGTALHGGILREVAWGVAPWFAVPAVLAIVSVILQRGFLF 120 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P R+S G+K + L F KS K+ + ++ L ++ + Sbjct: 121 TGSKLVPKLNRISPISGVKNKFGRQGLFEFAKSSTKLTIYCVVLGFFLVGQIERIIGSMQ 180 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P I+ + ++ ++LL L +D W + K +MS++E+ DE+KQS G Sbjct: 181 LPPRLIIAELGHMLLALMGIVLLISLALGTIDFLWQRAEHTRKNRMSRKEMMDELKQSEG 240 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK +++ +KM+ A ++I NPTHYA+AL++ +++ AP+ VAKG + Sbjct: 241 DPFIKQQRRQRGHDIATNKMLLDVPTADVVIVNPTHYAIALKWDRSQAMAPICVAKGVDE 300 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +A ++R+IA E +P+ +P AR+L +V + I Y+AVA I Sbjct: 301 VAARIREIAAESAVPMHSDPPTARALHAEVTLGQEISQHHYRAVAAAIRF 350 >gi|146309439|ref|YP_001189904.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp] gi|145577640|gb|ABP87172.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp] Length = 377 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 173/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++ KTE S+ K++ + +G S++ S S+LA L L F + ++ Sbjct: 1 MSEQNSGQEKTEEASAHKLKKSKEDGQVARSKDLSTTISLLATLFILKFSAGLFLEGLSD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + + LL + L +L+ P LL ++ + L+ V + Sbjct: 61 SFRLSYIQFGHSEI-GLDDLDTLLGYNMLVFIKLLAPMLLTSVLV-VALSLVPGGWVFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++ G+ RI+S N +KS +K++++ + + + ++ ++ Sbjct: 119 KNFAPKLSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPELIALQRSS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A +++ ++L + +DI + + K++M+KQE K+E K G P Sbjct: 179 VVQAISAALNLTFNLILCLMLVFVLFSFIDIPLQRYFFLKKMRMTKQERKEEHKNQEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R K + R ++ ++ + A +II NPTHYA+AL+Y + AP ++AKG + A Sbjct: 239 EVKARIKQLQRQMLQRQISKVIKNADVIIVNPTHYAVALKYDSKKAAAPFVLAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A +H + + E P LAR+++ IN IP Y AVA ++ I K Sbjct: 299 LYMRQMAKKHELEVLEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQLK 351 >gi|21672516|ref|NP_660583.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008464|sp|Q8K9S1|FLHB_BUCAP RecName: Full=Flagellar biosynthetic protein flhB gi|21623138|gb|AAM67794.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 381 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 172/350 (49%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D + KTE P+ I+ +G SRE + ++ L L + I+ + + + Sbjct: 3 HDINEEKTEQPTEHHIKKFRKKGETRYSRELNSLLILIFGLSNLWWSRYSIIFELKTIMF 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q L + +I + P + I ++ N + Sbjct: 63 NSF-NFNQNILTNQQNISLNFFFFIKKILIVFFPFFSFLICIIIIPPILFGGIKFNFTSL 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K +F R++L G+K+ +S + K+ +K+ ++ I L ++ +L + N S Sbjct: 122 KLNFARLNLLHGLKKFFSFQIFIELFKTTLKLFIISCISIFYLWIYFYKILFLSTKNISS 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L F + I+I+L + + +LD+ W +Y KLKM+ QEIKDE K+ G+P IK Sbjct: 182 SLLDGFNVIFYCCILIILGLIPIVILDVFWRQWSYYKKLKMTHQEIKDEFKEREGSPQIK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + +R +M+ +A +IITNP HYA+AL+Y + +AP ++AKG A K+ Sbjct: 242 ARIRQQMKINLRRRMISDVPKADVIITNPIHYAIALKYDIHKMNAPKVIAKGIGATAMKI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +KIA ++ I I PSLAR+L++ I IP YKAVA+++ ++ K Sbjct: 302 QKIALKNGIAIIASPSLARALYRYSEIGQYIPGPLYKAVAEILAWVWKVK 351 >gi|145284335|gb|ABP51916.1| AscU [Aeromonas veronii bv. sobria] Length = 352 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 176/347 (50%), Gaps = 3/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + IL+ + L+ + + + + Sbjct: 2 SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMMIPE 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + ++H+V +L + L IP L + ++ + S+ Q +L+ +KP Sbjct: 62 SHINLPFTQALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML I Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMSCITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++ Sbjct: 179 VLGGMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M R+++I+ NPTH A+ +RY + E PV+ K + A ++RKI Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E IP+ + LAR+L++ +N+ IP +A A+++ + + Sbjct: 299 AEEEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVLRWLEQWR 345 >gi|323698077|ref|ZP_08109989.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. ND132] gi|323458009|gb|EGB13874.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans ND132] Length = 356 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 175/351 (49%), Gaps = 3/351 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 +KTE + K+ + EGN +E ++LA ++ L F T Sbjct: 4 QEDPSKTERATQKRRDKQREEGNVAKGQEIPKVMTLLAGVLTLRFMIGFYSDQFTEIYRW 63 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A ++ D L + LV+P +L+ + S +Q + ++ Sbjct: 64 TFLEAINFQV-DKPMAYALFAWGLKKMALLVVPFMLVLALVAFLSLRLQVGSLWTTKPLE 122 Query: 125 PSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 P F ++ ++ GIK+ + S + L+ KS ++ + V I + + +L +N Sbjct: 123 PKFGKLFNIMSGIKKLMLSPDALLKLGKSLLQAMAVAIAPYIVIRQELPNLLPLFHSNVQ 182 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 IL +++ L+ + + V D+ + + ++KM+K EIKDE KQ+ G+P I Sbjct: 183 GILAFIVTVGYRMVCYALIPMLLIAVADLVYERWNYEEQIKMTKDEIKDERKQAEGDPKI 242 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K +Q+ + +M + +A ++ITNPTHYA+AL+Y + AP+++AKG N +A++ Sbjct: 243 KQKQRQKMMEVMASRMFQDIPKADVVITNPTHYAVALQYDPLKAPAPLVLAKGVNKVAER 302 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++++A E++IPI E LA++L+KQV I IP ++AVA ++ K+ K Sbjct: 303 IKEVARENSIPIEENRPLAQALYKQVEIGETIPEELFQAVAAILAKLEKFK 353 >gi|332527145|ref|ZP_08403222.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2] gi|332111573|gb|EGJ11555.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2] Length = 386 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 171/356 (48%), Gaps = 9/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D ++ S +KI + +G S++ +++ A L L+ F +T Sbjct: 1 MA--DDAQDRRLPASQRKISKSREDGQVARSQDLGHLATLGAGLALLIVFAP----RLTD 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL---SLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 L +L + + + + +L L + +V+P + + S ++ Sbjct: 55 WLRRVLETGLRFDAQAMDRPGTMLERLSASGVDMLVVVLPLGAVVAVVAAASAVLAGGWN 114 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++P F +++ G+ ++ LVN +K + +++G I + L + Sbjct: 115 WTFKPMQPKFSKLNPITGLGNLFKGQQLVNTLKICLLALILGAIGMLYLHAQLAEFTSLV 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + + ++ ++++LL + ++D+ +L+MS +E+K E K+S Sbjct: 175 AMPLPTAMAETGSLLQGGMVLLLLALTLFALVDVPLQRFMLLRRLRMSFEEVKQEHKESE 234 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K + K+ R R KMM A A +++ NPTH+A+AL+Y + AP +VAKG + Sbjct: 235 GNPEVKGKIKAKMREMARRKMMAAVPSADLVVMNPTHFAVALKYDEATMAAPRVVAKGAD 294 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+A ++R A N+P+ E P LAR+L++ I+ IP + AVAQ++ +Y + Sbjct: 295 LLAFRIRDAAKAANVPVLEAPPLARALYRHAEIDQEIPAALFGAVAQVLAWVYQLR 350 >gi|322615094|gb|EFY12017.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619935|gb|EFY16808.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622247|gb|EFY19092.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627769|gb|EFY24559.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632886|gb|EFY29630.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636623|gb|EFY33326.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641184|gb|EFY37826.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644881|gb|EFY41414.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650283|gb|EFY46697.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655856|gb|EFY52158.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660182|gb|EFY56421.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665252|gb|EFY61440.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669509|gb|EFY65657.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673435|gb|EFY69537.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677363|gb|EFY73427.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679974|gb|EFY76013.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687446|gb|EFY83418.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194101|gb|EFZ79300.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198582|gb|EFZ83683.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202908|gb|EFZ87943.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208628|gb|EFZ93566.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211164|gb|EFZ96011.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217605|gb|EGA02320.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218954|gb|EGA03464.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223784|gb|EGA08088.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229407|gb|EGA13530.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232630|gb|EGA16726.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240332|gb|EGA24376.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242679|gb|EGA26700.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245890|gb|EGA29878.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323256473|gb|EGA40206.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260036|gb|EGA43661.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323271476|gb|EGA54897.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 352 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLTHALIESLTSALLFLGAG---VIVATVGSVFLQVGGVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T L Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|241761183|ref|ZP_04759272.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752855|ref|YP_003225748.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241374802|gb|EER64263.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552218|gb|ACV75164.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 380 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 3/353 (0%) Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+++D D KTEAP+ K++ + +G+ S+E + ++LA L + L +Y + Sbjct: 1 MADSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVYDLG 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L + L+ + L +L I + + Sbjct: 61 IMLKMGLS--FDFNAFSKFDPFSVFIRLITCIILPFSMLFVLMAFAAIAAPAVLGSLGFR 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + +R++ G R++ + L KS VK++L+G++ L + ++ Sbjct: 119 WEALNFKPERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLWILWQRLPVIMQLGRH 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + + +++++ + +A + +D+ + +L+MSKQEIKDE KQ+ G+ Sbjct: 179 DLKAAINEIGHIFLILVLVMSVALAVVAAIDVPIQIFRRNRRLRMSKQEIKDEHKQTEGS 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK + + R +A +T++ITNPTH+A+AL+Y E+ AP++ AKG + + Sbjct: 239 PEIKAAVRQRQIAVFRASNRKAVQDSTVVITNPTHFAVALKYKAGEDIAPIVTAKGIDEL 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A +R++A E ++P+ P LAR+++ I YKAVA ++ I+ Sbjct: 299 ALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELYKAVASILAFIFRL 351 >gi|238913175|ref|ZP_04657012.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 352 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLVALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S+++LV KS +K+I++ I T L Sbjct: 120 HINPVSNFKQIFSLHSLVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLVCGLLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQASYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|332531605|ref|ZP_08407502.1| type III secretion exporter [Hylemonella gracilis ATCC 19624] gi|332038968|gb|EGI75397.1| type III secretion exporter [Hylemonella gracilis ATCC 19624] Length = 417 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 167/350 (47%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + ++ S +K++ A +G P SR+ S + + + L+ +P IYS + Sbjct: 2 ESSSQDRNLPASQRKLQRAREDGQVPRSRDFSHLAVLGGGAVTLV-LTAPWIYSALRESL 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 S + + D ++ L ++L+ + + + ++ + + + L V + Sbjct: 61 ARHLSFSAADVRDPKFMLDHLHTMTLTGAGISLGIAVIIVAIAVVATLAGGGWVWTTTPL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P F R++ +G++ +++ L +K V + + + ++ + + Sbjct: 121 APDFSRINPIKGLQGMFTKKKLAEVVKLAFIAFFVLALAAVFIYYTLPSISTLVLQPSTA 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + ++L + + ++D+ S+LKMS QE+KDE K GNP +K Sbjct: 181 GIERMLNWLVMGCGLLLAVVLLVALIDLPLQIFLHKSELKMSLQEMKDEHKDIEGNPQMK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +R++ R + + + +A ++ NPTHYA+A++Y + AP +V+KG +L+A K+ Sbjct: 241 SRRRQKQRELAQRQSLPKVPQADFVLMNPTHYAVAVKYEEKSMAAPRVVSKGADLLAMKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R +A H +P+ + P LAR+L+ ++ IP Y AVAQ++ +Y K Sbjct: 301 RDLAKAHQVPVLQSPVLARALYAHAELDQDIPSTLYTAVAQVLAYVYRLK 350 >gi|320177410|gb|EFW52411.1| Flagellar biosynthesis protein FlhB [Shigella dysenteriae CDC 74-1112] Length = 324 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 159/286 (55%) Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 ++D + I+ + L A ++P + ++ + S ++ V + ++P F Sbjct: 7 HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKF 66 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P + + + Sbjct: 67 SKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAESPITAMGN 126 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + Sbjct: 127 AMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIR 186 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I Sbjct: 187 QMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIG 246 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E+N+P E P LAR+L++ I IP Y AVA+++ I+ K Sbjct: 247 AENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 292 >gi|167572950|ref|ZP_02365824.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis C6786] Length = 377 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 156/346 (45%), Gaps = 5/346 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G S E + + L Y LF + + L+ Sbjct: 3 EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGA----HLLQAFEALVDV 58 Query: 69 ATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + +D + T L R + +L + + + + Q P+L + +KPS Sbjct: 59 SIAVVNDDFAAATARWTSALGAVLIRFTLGMAVLVIAMTVAAAIAQIGPLLAVEALKPSL 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ +K+++S+ +L F KS K+ ++ I + + ++ + L Sbjct: 119 DKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIFFYLIRQYAPSLQFLPLCSVECGLAV 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + ++ F + D + + +L MS ++IK E K S GNP IK++++ Sbjct: 179 STQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKHKRR 238 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 I R + +++T+++ NPTH A+ L Y + E P ++ G++ +A + +A Sbjct: 239 EIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIEIGRDKLALHIVALA 298 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +P+ E LA +L ++ + IPP ++ VA L+ + Sbjct: 299 ERERVPVVENVPLAHALANRLDVGQRIPPDLFEPVAHLLRVAMQLR 344 >gi|46398249|gb|AAS91803.1| AscU [Aeromonas hydrophila] Length = 352 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 3/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + IL+ + L+ + + + L Sbjct: 2 SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLIAMSDYYLEHLGKLM---L 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ L + ++ +L + L IP L + ++ + S++ Q +L+ +KP Sbjct: 59 IPASHINLPFTEALNHVVENLMQEMAYLCIPILAVAVLVVLVSHIAQYGFLLSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K V+ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML + Sbjct: 119 IKHVNPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWVTIEGNLQAMLQLPGCGMSCVAP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++ Sbjct: 179 VLGGMMGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M R+++I+ NPTH A+ + Y + E PV+ K + A ++RKI Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGILYERGETPLPVVTLKFTDAQALQVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E IP+ + LAR+L++ IN+ IP +A A+++ + + Sbjct: 299 AEEEGIPVLQRIPLARALYRDAQINNYIPADQIEATAEVLRWLEQWR 345 >gi|284989537|ref|YP_003408091.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160] gi|284062782|gb|ADB73720.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160] Length = 377 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 170/353 (48%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ ++++ A EG P ++E + A L V + Sbjct: 1 MAKDGPGGEKTEDPTPQRLKKARKEGQIPRTQELGTWVGAAAASFLLPMLVRNAFDQVGA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + ++ + LL + + +P + M+ G+ + Q ++ Sbjct: 61 ---MFVQVGAVVETPEVEAVTALLGQALDTFVTVALPMAVALMVVGVAASAAQGGVTVSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+ K+++ G+KR++ + L K+ +K +GT++ ++ ++ ++ A Sbjct: 118 KPMKPTLKKLNPFPGMKRMFGGHGLWEATKAVIKTAALGTVVVVT-SDRAQQLVSSAGAL 176 Query: 181 PHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P S + F ++I ++ + V D + +L+M+K EI+ E K S G+ Sbjct: 177 PLSAITATFTDSAVLMIRVVAVTGLVIAVADYVIVRKRTMKELRMTKYEIQQEHKNSEGD 236 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++++ + R++MM + A +++ NPTH A+AL+Y AP +VAKG + + Sbjct: 237 PHVKAQRRATQMAMSRNRMMAEVADADVLLVNPTHVAVALKYEPDR-GAPRVVAKGADEV 295 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A K+R+ A E +P+ ++ LAR+L I +P + AVA+++ + Sbjct: 296 AAKLRERAAEARVPLVQDVPLARALHASCEIGQEVPAQLFTAVARVLAFVMQL 348 >gi|238764055|ref|ZP_04625010.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii ATCC 33638] gi|238697726|gb|EEP90488.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii ATCC 33638] Length = 358 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 144/342 (42%), Gaps = 5/342 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + K E P++K++ +A +G S E + + + Y + V Sbjct: 1 MSGESS--EKNEKPTAKRLREAREKGQVIKSVEITSGIQLAVLVAYFFLAGDTLLDQVGV 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + Q ++ I + +V ++ I + L Q P+L Sbjct: 59 LIRSSIKQLQQPFTFALARIG---SECMAVLIHIVGILGGALILMTIIAGLAQVGPLLAT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V + ++ K+++S+ +L KS +K+ ++ I L + Sbjct: 116 KAVAFKGEHINPINNAKQLFSLRSLFELTKSLLKVGVLTLIFGYLLARYASSFGYLAYCG 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + +L ++ ++LD + + +LKMS +E+K E K S G+P Sbjct: 176 SYCAIPVFGTLMSWLLGALIACYGVFSLLDYSFQRYNTLKQLKMSHEEVKREHKDSDGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK +++ + + + R+T ++ NPTH+A+ L Y + PV++ KG+ A Sbjct: 236 HIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYHPDDAPLPVVIEKGKGERA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + K+A + IPI E +LAR+L + V IP ++ V Sbjct: 296 ALIIKLAQQQGIPIVENIALARTLHRDVACGDTIPEPLFEPV 337 >gi|251772429|gb|EES52996.1| flagellar biosynthetic protein FlhB [Leptospirillum ferrodiazotrophum] Length = 365 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%) Query: 1 MSENDAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M++N+ + E P+S+++E A EG SRE F + A LI + + S + + Sbjct: 1 MADNENDGQLRQEEPTSRRLEKAREEGQVARSREVGYFFFLAASLILMASYGSRLVEGLR 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 D+ L + + L I + L L P L F++FG+ +Y++Q +++ Sbjct: 61 DDMSYYLRHSGEISL-TPDGITPFVKGLVLHEMGRTFPLLGGFLVFGVAAYIVQGGILVS 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + RVS +GIKR++S L ++ +K+++ I+ +L +++ T+ + Sbjct: 120 PKAAAIKWNRVSPSQGIKRLFSWRALEELLRYTIKVVVSLLILFYALKQDWMTLPALMET 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 H ++ + VL+ L A L + D + L+M++ EIK+E K++ G+ Sbjct: 180 GAHRMVGALYHFTFVVLVSFLPLYAALAIGDYLFQRFMMMRGLRMTRTEIKEETKETEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P ++ R +SI R+ R +MM AT++ITNPTH+A+ L+Y APV+VAKG + + Sbjct: 240 PHVRARIRSIQRAMARRRMMSKIKDATVVITNPTHFAVVLKYHPESMAAPVVVAKGADEV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A ++R+IA E +P+ E+P AR LF++ P++ IP FY+AVA+++ +Y + Sbjct: 300 AFRIREIAREVGVPVVEDPPTARGLFRECPLDREIPFTFYEAVARILSILYQR 352 >gi|205352862|ref|YP_002226663.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857072|ref|YP_002243723.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272643|emb|CAR37553.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708875|emb|CAR33205.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|309243390|gb|ADO51966.1| SsaU [Salmonella enterica subsp. enterica serovar Gallinarum] gi|322714480|gb|EFZ06051.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326627934|gb|EGE34277.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 352 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T L Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|15607000|ref|NP_214382.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5] gi|6225349|sp|O67813|FLHB_AQUAE RecName: Full=Flagellar biosynthetic protein flhB gi|2984250|gb|AAC07777.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5] Length = 350 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 184/353 (52%), Gaps = 8/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++KTE + K EGN S E + +L L+ LLF + + Sbjct: 1 MAE----EHKTERATPYKRRKVREEGNVAKSHEIASSLVVLLSLLLLLFLGTY----IAK 52 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ ++ + T DIS + L + + +++ P L ++ I S++ Q + L Sbjct: 53 EVILIFLAVTGYVHADISELGSLYENFYENIVKVLTPLFFLALLVVILSHVAQFGFIFTL 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++R++ EGIKR+ S+ L +K+ +K L+ I L + + L + Sbjct: 113 KPLSFKWERINPFEGIKRLISLTTLFETVKNTLKAFLLIGIAVFVLKGSLYFFLSSSTYP 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L T LI + + + LD + Q+ K+ MS++E+K+E KQ G+P Sbjct: 173 LAETLKSFIKTSAITLITLGVVALLIAFLDYAFKRWQYEKKIMMSRRELKEEYKQLEGHP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+R K+ R + +MM +AT++ITNPTH A+AL+Y ++ APV+VAKG+ IA Sbjct: 233 EVKSRIKARMRELAKSRMMAEVPKATVVITNPTHIAIALKYNPEKDKAPVVVAKGKGTIA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +K+ +IA ++IP+ +P LAR+L+ V + I P FYKAVA++I + KK Sbjct: 293 QKIVEIAENYSIPVVRKPELARALYPAVEVGKEISPKFYKAVAEIIAYVMFKK 345 >gi|294140998|ref|YP_003556976.1| type III secretion system EscU protein [Shewanella violacea DSS12] gi|293327467|dbj|BAJ02198.1| type III secretion system EscU protein [Shewanella violacea DSS12] Length = 349 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 151/341 (44%), Gaps = 3/341 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K++++A N G S E + L I L +F G + S ++++ ++ Sbjct: 3 EKTEKPTEKQLKEARNRGQVIKSPEI---VTGLQMAIILGYFLFEGQNLMQSIMYLINST 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L + +L ++ A R + L+ + I + Q PV +KPS Sbjct: 60 IDAINLPLETAANQILDRFAMVALRFLGGLALVLICTIIVGNIAQTGPVWAAESLKPSMN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++++ K++ S ++ +K+ VK+ ++ + L + + Sbjct: 120 KLNVVNNAKQMISWKSVFELVKNLVKVTVLCLVFYYLLHRYVNSFQYLPLCGEECGIEVI 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L V D + +LKMSK +IK E K S GNP +K +++ Sbjct: 180 STLITWLWGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNPEVKQKRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I R + ++++++ NPTH A+ L Y E P+++ K ++ +A + +A Sbjct: 240 IQREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMALHIVGMAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + IP+ E LAR+++ Q+ S I ++ VA L+ + Sbjct: 300 KAGIPVVENIPLARAIYSQIETGSPISEDLFEPVADLLRVV 340 >gi|99082795|ref|YP_614949.1| flagellar biosynthesis protein FlhB [Ruegeria sp. TM1040] gi|99039075|gb|ABF65687.1| Flagellar biosynthetic protein flhB [Ruegeria sp. TM1040] Length = 363 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 159/350 (45%), Gaps = 2/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ + +K+ P+ +K+ A EG+ P S + +S L LI I + + Sbjct: 1 MSDENDDSDKSFEPTPEKLRKARQEGDVPKSNDLLQAASYLGLLIAFYTAGRSSIEQLGT 60 Query: 61 DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 L ++ + + A VI + I + Q+ V Sbjct: 61 VLMSMIDQPDRLAPVFFGDGIAAPVAWEFISDALTSVIAWFAVPAALVILAVFAQKAMVF 120 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P R+S+ + K + + L F KSF K++L + + L+ M+ + Sbjct: 121 APKRIQPKLSRLSIIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGVYLSWRLPEMIASVG 180 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 +P +++ + LI+ L+ + ++D + ++ K MS++++ DE+K S G Sbjct: 181 TSPFTVVPFLVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEG 240 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P K ++K R + ++ A A ++I NPTHYA+AL++ + AP VAKG + Sbjct: 241 DPHTKGQRKQKGRQIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDG 300 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +A +R+IA E+ +P+ +P AR+L+ V + I Y VA I Sbjct: 301 VAAMIREIAQENGVPLHSDPPTARALYATVEVGEEIAEEHYAPVAAAIRF 350 >gi|145301466|ref|YP_001144305.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449] gi|38201232|emb|CAD56767.1| ascU protein [Aeromonas salmonicida subsp. salmonicida] gi|66947955|emb|CAE83092.1| AscU protein [Aeromonas salmonicida subsp. salmonicida] gi|142856348|gb|ABO92557.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 352 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 88/347 (25%), Positives = 177/347 (51%), Gaps = 3/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK+ DA +G S+E + IL+ + L+ + + + + Sbjct: 2 SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMMIPE 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + ++H+V +L + L IP L + ++ + S+ Q +L+ +KP Sbjct: 62 SHINLPFTQALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML + I Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMNCITP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + + + D + ++Q +LKMSK E+K E K+ G+P IK+++ Sbjct: 179 VLGSMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M R+++I+ NPTH A+ +RY + E PV+ K + A ++RKI Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + IP+ + LAR+L++ +N+ IP +A A+++ + + Sbjct: 299 AEDEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVLRWLEQWR 345 >gi|126738573|ref|ZP_01754278.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6] gi|126720372|gb|EBA17078.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6] Length = 360 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 84/349 (24%), Positives = 164/349 (46%), Gaps = 2/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++D D K+ P+ +K++ A +G S + S+ ++ L ++ + + + Sbjct: 1 MSQDDDSD-KSFEPTPQKLQKAREKGEVAKSTDLSVAAAYLGLVLAFYAVGADMVAGTGT 59 Query: 61 DLHVLLASATQRKLEDI-SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L + + + L + + +IP L+ + + S L Q+ V Sbjct: 60 VLMTFFDQPDRLAQQLFYGGGTAPVGGLLTAIATPLIPLFLIPAVLVLLSILGQKALVFA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P ++S+ K L F KS K+ + + + LT M+ + Sbjct: 120 PSKLEPKLSKISIISNAKNKLGRAGLFEFGKSAFKLTIYSICLGVYLTHRMPEMIASVGT 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 S++ + L++ LL + V+D + + + K MS++EI+DE K S G+ Sbjct: 180 GAFSVIKLLSELGMEFLVIALLVSLPIGVVDAVFQHAEHRRKNMMSRKEIQDEQKNSEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K +++ A++ +MM A A++++ NPTHYA+AL++ AP+ VAKG + + Sbjct: 240 PHMKAKRRQKAQAIALGQMMGAVPDASVVVVNPTHYAVALKWEGGAGTAPICVAKGVDEV 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +R++A E+ +PI +P AR+L+ + I + Y VA I Sbjct: 300 AAAIRQVANENAVPIHSDPPTARALYATIEIGEEVMEEHYAPVAAAIRF 348 >gi|332162921|ref|YP_004299498.1| flagellar assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667151|gb|ADZ43795.1| Flagellar assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 377 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 167/340 (49%), Gaps = 3/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+S K+ A +G+ P S++ ++ + ++ LI L F + + +A + Sbjct: 12 PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLPYYKELIGESFLAVGRTAGR-- 69 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 ++D + I LL + ++ L + I + L+ + P FK++S Sbjct: 70 IDDPTAIEQLLLANLFIFFKFLL-TLAPIPLVSILATLVPGGWNFTPVKLIPDFKKLSPL 128 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 GIK+I+S +N +K K +V + + + + +L + + F Sbjct: 129 AGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVKNSLPDLLRLQALPLQEAITEGFTLYH 188 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 +L+ + I +DI S + + K+KM+KQE+K E K + GNP IK R + + R Sbjct: 189 GILVYFIAIIVIFAAIDIPLSNYLFTKKMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQF 248 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 ++ + A +IITNPTH+++AL+Y + AP ++AKG++ IA +R +A ++I Sbjct: 249 AMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIALYIRTVAKNNDIE 308 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 I E P LAR+++ +N +P Y+A+AQ++ + K Sbjct: 309 IVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVLTYVMQVK 348 >gi|194734066|ref|YP_002114435.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709568|gb|ACF88789.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 352 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLTHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T L Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|227873532|ref|ZP_03991777.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] gi|227840622|gb|EEJ51007.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] Length = 361 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 8/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D KTEAPS KK DA EGN SR+ + + + Y + F P IY Sbjct: 1 MADGD----KTEAPSEKKRSDARKEGNVFQSRDIVTVAVLF-GVFYAVRFMMPFIYK--- 52 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL L+ + E L + + +P LL+ + G+ + L+Q ++ Sbjct: 53 DLRNFLSYILELLDEPSPISNKLYLRFTWLFVKSAMPLLLVTVFLGVIASLVQTRFNISF 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ +G+ RI+S N+V +K+ +KII++ + + + + + + Sbjct: 113 KLLTPKFSKLNPMQGLGRIFSKKNVVELLKNILKIIILINFLYSIIKADIIPIAKMVHMD 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + ++ + + + D + ++ + LKM+KQE+KDE K GNP Sbjct: 173 IQNSSLALVSMMFDLITRVCGVFLIIALFDFMYQKWEYENNLKMTKQEVKDEYKMLEGNP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK R K R+R +MM+ A +II NP H A+A++Y +N APV++AKGQ+ +A Sbjct: 233 EIKGRMKQQMRARANQRMMQQVPDADVIIRNPEHLAIAIKYDPDKNTAPVVLAKGQDELA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + + + E LAR+++ + IP FY AVA+++ IY K+ Sbjct: 293 LRIVAVGEANGVTAIENKPLARAMYPLCHVGKEIPGDFYGAVAEILVYIYQKE 345 >gi|85710192|ref|ZP_01041257.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1] gi|85688902|gb|EAQ28906.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1] Length = 378 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 87/353 (24%), Positives = 168/353 (47%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + + P+ K+ DA +G+ S+E + + ++A +++ P + Sbjct: 1 MSEETNGEKRF-DPTPKRRSDAAKKGDVLRSKEVATAA-VMAAGTFMILIIGPWLLDSME 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L D + +++ ++ + L+ + +GS ++ Sbjct: 59 RVARAAFGFDPAGLGDFA-PGAMISQIAQEILPPIFAIGLVVIAVTVGSQMVLGEGRWVP 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++KP R++ G+KRI+ + L+ KS +K++L+G+I ++ + ML Sbjct: 118 QNLKPKPSRINPLSGLKRIFGMQGLIELGKSILKLLLLGSIAAWWVSGSLDGMLGLGRGT 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A+ + ++ M+++ + + V+D Q +LKMS Q++KDE KQS G+P Sbjct: 178 LDAQLNFAWDAMTTLVAMLVVGLLVIAVIDYPLQRLQRDKRLKMSFQDLKDENKQSEGSP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++ R R + +A A I+ NP H+A+AL Y APV++AKG+ A Sbjct: 238 EMKMARRQRQRDLSRGSIGKAMKEAQFIVVNPMHFAVALTYDPNLAPAPVVLAKGRGETA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A E +P+ P LAR+L+ + + Y A+A L+ + K Sbjct: 298 MAMRELASEMELPVLHYPQLARALYFTTRADQMVREELYVAIAALVAFVMSLK 350 >gi|16764772|ref|NP_460387.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161614161|ref|YP_001588126.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167995056|ref|ZP_02576146.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262232|ref|ZP_03162306.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|3024668|sp|P96069|SSAU_SALTY RecName: Full=Secretion system apparatus protein ssaU gi|1695196|emb|CAA68202.1| secretion system apparatus, SsaU [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419943|gb|AAL20346.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161363525|gb|ABX67293.1| hypothetical protein SPAB_01903 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197240487|gb|EDY23107.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205327191|gb|EDZ13955.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267993311|gb|ACY88196.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157957|emb|CBW17452.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912407|dbj|BAJ36381.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129694|gb|ADX17124.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988309|gb|AEF07292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 352 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + +++F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|119714987|ref|YP_921952.1| type III secretion exporter [Nocardioides sp. JS614] gi|119535648|gb|ABL80265.1| type III secretion exporter [Nocardioides sp. JS614] Length = 381 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 154/346 (44%), Gaps = 6/346 (1%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 K+E P++K+ ++ EG P S E +S++L ++L F I + + + Sbjct: 3 GEKSEKPTAKRNKENRKEGQVPRSPEIGAWSALLLIAMFLPRLFGHEIDKLRELTTTMFS 62 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 SA D V LL +++ + GI L Q L VKP Sbjct: 63 SAADA---DAEIAVQLLGQGLWHVLLVLVVLGAGIAVVGIAGALGQGGFFLATKSVKPKL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ G KRI+ L K ++ +V ++ +++ + + + +L Sbjct: 120 SKLNPLPGFKRIFGPRALWEGTKMLIRSGIVALLVWLAVKSMLPLIGGLMPMSL--VLDQ 177 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 ++ I + L D K +MSK E+K E KQS G+P++K + Sbjct: 178 FASHALSMIRNIAVAGVLLGAADYLVQRKLMGKKTRMSKDEVKQEHKQSEGDPLLKGAIR 237 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 S + R++MM A +++ NPTH A+ALRY AP +VA+G +IA +R+ A Sbjct: 238 SRQLAASRNRMMADVPTADVVLVNPTHVAVALRYEPER-GAPRVVARGAGVIAAAIREKA 296 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 E +P+ + LAR+L+ + IP + AVAQ++ + ++ Sbjct: 297 TEARVPLVRDVPLARALYTSTTVGQEIPTELFAAVAQVLAFVLSRR 342 >gi|16760489|ref|NP_456106.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141751|ref|NP_805093.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413607|ref|YP_150682.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168233617|ref|ZP_02658675.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168263746|ref|ZP_02685719.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463168|ref|ZP_02697099.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822292|ref|ZP_02834292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470706|ref|ZP_03076690.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197250158|ref|YP_002146621.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362531|ref|YP_002142168.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213426013|ref|ZP_03358763.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213613054|ref|ZP_03370880.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647290|ref|ZP_03377343.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289827203|ref|ZP_06545926.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25322219|pir||AF0696 probable type III secretion protein ssaU [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502785|emb|CAD01943.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137379|gb|AAO68942.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127864|gb|AAV77370.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194457070|gb|EDX45909.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634165|gb|EDX52517.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094008|emb|CAR59504.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213861|gb|ACH51258.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332387|gb|EDZ19151.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341285|gb|EDZ28049.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347621|gb|EDZ34252.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320086100|emb|CBY95874.1| Secretion system apparatus protein ssaU [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 352 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|256376454|ref|YP_003100114.1| type III secretion exporter [Actinosynnema mirum DSM 43827] gi|255920757|gb|ACU36268.1| type III secretion exporter [Actinosynnema mirum DSM 43827] Length = 363 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 174/353 (49%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + TE P++KK+ DA EG + + + IL L + + Sbjct: 1 MSGKNKDA--TEEPTAKKVRDAKREGRMARTPDLGTWLGILGATWTLPMTLTSLLDIGQG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L +A + + V ++ L + V+P L ++ + + +Q ++ Sbjct: 59 LLKK---AAGFMAAPEPALAVAIVKDGVLDGALAVLPLSLTIIVATLVAAGLQGTLRMST 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP F +++ +GIK ++ ++L +K+ +K L+ ++ +S++ +++ + + Sbjct: 116 KQFKPKFTQLNPLKGIKNMFGPHSLWEALKTLIKTSLLAGLLYVSVSGLVPSVVASGTLS 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ A T +L + + + V+D + + + +LKM+KQE+KDE KQS G+P Sbjct: 176 LAALTDVATGTAMSLLRLAAIGGLVMAVVDYAVAKRRIHKELKMTKQEVKDEHKQSEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K +S R++MM A +++ NPTH A+ALRY AP +VAKG IA Sbjct: 236 QLKGAIRSKQMQMSRNRMMAEVPNADVVLVNPTHIAVALRYDPAR-GAPRVVAKGAGAIA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A EH +PI ++ LAR+L K + IP + VAQ++ ++ K Sbjct: 295 TKIRELATEHRVPIVQDVPLARALHKACEVGHEIPFEMFGPVAQVLAFLHRLK 347 >gi|311695200|gb|ADP98073.1| flagellar biosynthesis protein FlhB [marine bacterium HP15] Length = 341 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 81/317 (25%), Positives = 157/317 (49%), Gaps = 1/317 (0%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 + +LA +L F + S+ + + + + D+ H+ L S A+ + Sbjct: 1 MAVLLAGAGGMLMFGASLGASLEAIMRDSFV-IERSAIFDMRHMSVQLIESSKEAAWALS 59 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 P L+L ++ I + +++ V P R+ +G+ R++S+ +L+ +K+ K+ Sbjct: 60 PILVLLLIAAIFGSIGIGGLLISGKAVAPKLNRMDPIKGLGRMFSMRSLIELVKAIAKVG 119 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216 LV + + L +L + H +T+ ++ + +D+ + + Sbjct: 120 LVMALAILILDLRTEDLLAIAEEPVVPAMEHVLWTIAWSFFLLSCATIIIAAIDVPFQIY 179 Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276 KL+M+KQE+KDE K + G P +K + + + R + +MM+ A ++ITNPTHYA Sbjct: 180 DHQKKLRMTKQEVKDEYKDTEGKPEVKGKIRQLQREMAQRRMMQDVPTADVVITNPTHYA 239 Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL+Y Q AP++VAKG + +A K+ +IA E+ + I P L R+++ I IP Sbjct: 240 VALKYDQKAMAAPIVVAKGADEVAFKIMEIARENKVEILRTPPLTRAVYHNTDIGEEIPD 299 Query: 337 VFYKAVAQLIYKIYHKK 353 Y A+AQ++ ++ + Sbjct: 300 GLYMAIAQVLAYVFQLR 316 >gi|261246628|emb|CBG24438.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 352 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + +++F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEYKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|83594153|ref|YP_427905.1| flagellar biosynthesis protein FlhB [Rhodospirillum rubrum ATCC 11170] gi|83577067|gb|ABC23618.1| Flagellar biosynthetic protein FlhB [Rhodospirillum rubrum ATCC 11170] Length = 356 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 183/353 (51%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D D+KTE PSS+K+ A +G S+E F + L + V Sbjct: 1 MADDD-KDSKTEDPSSRKLGKAREDGQVAQSQEVKSFLMLGGALFMVAVMGGWIADKVAL 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + V L L+ + L L L +P + +F++ I + Q + + Sbjct: 60 RVRVFLEQPDTFHLDAVGLRDLLARLLLDIGLVLAMP-IAMFIVLAILGGVGQFGLIFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +++S G KR++S+ LV +K VK+++V I+ + T F+ + Sbjct: 119 KKITPELQKISPLAGFKRLFSVRALVEGVKGIVKVVVVSAIVAALMLPRLRTPELFMDQD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + +LI ++ + + D + ++ +LKM+KQE+KDE K + G+P Sbjct: 179 ILVTLGQIHRLLVVLLISVVTIVGAIAAADFAFQKYKHIEELKMTKQEVKDEHKNAEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK++ + + R R +MM A+++ITNPTH+A+AL+Y APVLVAKGQ+ IA Sbjct: 239 QIKSKIRQLRMRRARERMMARVPEASVVITNPTHFAVALKYDMDMMSAPVLVAKGQDFIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R++A E+ +PI E P LAR+LF V I+ IPP YKAVA++I + K Sbjct: 299 LKIREVAEENEVPIVENPPLARALFAAVEIDHEIPPDHYKAVAEVIGYVMRLK 351 >gi|62180013|ref|YP_216430.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127646|gb|AAX65349.1| Secretion system apparatus SsaU [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 352 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T L Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|56551546|ref|YP_162385.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp. mobilis ZM4] gi|56543120|gb|AAV89274.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ZM4] Length = 380 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 3/353 (0%) Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+++D D KTEAP+ K++ + +G+ S+E + ++LA L + L +Y + Sbjct: 1 MTDSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVYDLG 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L + L+ + L +L I + + Sbjct: 61 IMLKMGLS--FDFNAFSKFDPFSVFIRLITCIILPFSMLFVLMAFAAIAAPAVLGSLGFR 118 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + +R++ G R++ + L KS VK++L+G++ L + ++ Sbjct: 119 WEALNFKPERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLWILWQRLPVIMQLGRH 178 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + + +++++ + +A + +D+ + +L+MSKQEIKDE KQ+ G+ Sbjct: 179 DLKAAINEIGHIFLILVLVMSVALAVVAAIDVPIQIFRRNRRLRMSKQEIKDEHKQTEGS 238 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK + + R +A +T++ITNPTH+A+AL+Y E+ AP++ AKG + + Sbjct: 239 PEIKAAVRQRQIAVFRASNRKAVQDSTVVITNPTHFAVALKYKAGEDIAPIVTAKGIDEL 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A +R++A E ++P+ P LAR+++ I YKAVA ++ I+ Sbjct: 299 ALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELYKAVASILAFIFRL 351 >gi|200389631|ref|ZP_03216242.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602076|gb|EDZ00622.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 352 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + +L S + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHVLIESLASVLLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + +++F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|284007636|emb|CBA73289.1| type III secretion inner membrane protein YscU,SpaS,EscU,HrcU,SsaU [Arsenophonus nasoniae] Length = 352 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 81/345 (23%), Positives = 163/345 (47%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K++ +A +G S E + L YL+ +++ +L +L Sbjct: 6 EKTEKPTQKRMNEARKKGQVIKSNEIVTVLKMAVILGYLIVE-GHALFNAIGELIILTVR 64 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + + + + R ++ +++ ++ S ++Q P+ + SF Sbjct: 65 SLSLPIDVAAKTI--IGSFIMLLLRFMVGLVVVLIVTICLSCIVQTGPIWAHKSLAFSFN 122 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++++ + K+I+S+ NL F K+ +K+I++ + L + + Sbjct: 123 KMNIIKNAKQIFSMKNLFEFGKNILKVIVLTLVFYYLLDYYVNLFQYLPTCGIDCGVMVT 182 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F ++ + L+ + D G+ Y+ +LKMSK++ K E K + GNP IK +++ Sbjct: 183 FTLIQWLWGGFLVCYIVFAIADYGFQYYHVMKELKMSKEDTKREFKDTEGNPQIKQKRRE 242 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I R + ++ ++T+II NPTH + L Y P +V K Q+ +A + K+A Sbjct: 243 IQREITSNSVVANVRKSTVIIRNPTHIVVCLYYQPGITPLPQVVEKFQDNMALHIVKLAE 302 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + IP+ E LAR+LF+QV IP ++ VA+L+ + + Sbjct: 303 KAGIPMVENILLARALFQQVETGQMIPESLFEPVAELLRLVMDLR 347 >gi|294675615|ref|YP_003576230.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB 1003] gi|294474435|gb|ADE83823.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB 1003] Length = 362 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 167/348 (47%), Gaps = 1/348 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D +K P+ +KIE A +G+ S E + + A +I L F + S + Sbjct: 1 MSEEDDS-SKEFDPTPQKIEQARKQGDLVKSTEVTGAAVYAAIVITALAFGKSSLESFGT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 VL+ A ++ + + ++ + V P LLL + + + QR V Sbjct: 60 WASVLIDQADSISVQLLGGGTVVAGNILGRMALTVAPWLLLPGVLVLAALAAQRAIVFAP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+ K+ + L F KSFVK++++ I+ + +L Sbjct: 120 EKLMPKVNRIDPIANFKQKFGSTGLFEFAKSFVKLVVISIILGNFMLRELPAILLSQKFE 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + L+++LL + +D W + + KM+++E+ DE+KQS G+P Sbjct: 180 ATVVAVSFPQMIVEFLLLMLLLAGVIAAIDYLWQRFDFLRRNKMTRKELTDEMKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK +++ A +M+ ++A ++I NPTHYA+AL++ + AP+ VAKG + +A Sbjct: 240 HIKAQRRQKAIEIATKQMIADVAKADVVIVNPTHYAVALKWERGAKRAPLCVAKGVDEVA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 ++R++A E +PI +P AR+L+ V I I P Y+ VA I Sbjct: 300 ARIREVAAEAGVPIHSDPPTARALYAAVDIGQEIHPDHYRPVAAAIRF 347 >gi|304414279|ref|ZP_07395647.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] gi|304283493|gb|EFL91889.1| type III secretion system apparatus protein [Candidatus Regiella insecticola LSR1] Length = 353 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 152/342 (44%), Gaps = 3/342 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ KKI+DA +G S E + + ++ LIY + I + + + Sbjct: 3 EKNEKPTPKKIKDAREKGQVIKSVEITSGAQLVVVLIYFTLTGNDLIDQAAALIRSSIEQ 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 +Q I T L + + ++ L++ + S Q P+ + + Sbjct: 63 LSQPMNIAALRIGAEATALLMHITGILGGALIIITLLMGIS---QIGPLWAPKALSIKGE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ ++ + S +L KS +KI+ + I L+ T + Sbjct: 120 RINPINNLRNLISFRSLFELGKSLIKIVSLSLIFGYLLSRYAPTFGYLSYCGSVCAMPVF 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +L ++ +LD + H +LKMS +EIK E K S G+P IK +++ Sbjct: 180 GTLMSWLLGSLIACYLLFALLDYSFQRHSVMKQLKMSPEEIKREYKDSEGDPHIKQKRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + +R+T ++ NPTH+A+ L Y E P+++ KG + +AK + K+A Sbjct: 240 LQQQIQSGSLSTNVNRSTAVVRNPTHFAVCLFYHPEEAPLPIVLEKGHHEMAKTIIKMAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +P+ E +LAR+L++ V + IP ++ VA L+ + Sbjct: 300 RAGVPVIENVALARALYRDVDCGNTIPEKLFEPVATLLRMVL 341 >gi|198243973|ref|YP_002215710.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938489|gb|ACH75822.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623457|gb|EGE29802.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 352 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + +L S + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHILIESLASVLLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|51594685|ref|YP_068876.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis IP 32953] gi|186893688|ref|YP_001870800.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis PB1/+] gi|51587967|emb|CAH19570.1| putative type III secretion apparatus protein EscU/SsaU/YscU [Yersinia pseudotuberculosis IP 32953] gi|186696714|gb|ACC87343.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis PB1/+] Length = 355 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 155/341 (45%), Gaps = 5/341 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 K E P+ K++++A +G S E + ++A +IY L YS+ L+ Sbjct: 2 STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALI 57 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S+ + + ++ + + ++ +V+ ++ I + + Q P+L V Sbjct: 58 RSSIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSF 117 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ + K+++S+ ++ MKS +K+ ++ I L + + L Sbjct: 118 KGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCAL 177 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +L ++ +++D + + +LKMS E+K E K S G+P IK + Sbjct: 178 PVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQK 237 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + R+T ++ NPTH+A+ L Y E P+++ KG + A + Sbjct: 238 RRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVS 297 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 298 LAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338 >gi|304312007|ref|YP_003811605.1| Translocation protein in type III secretion [gamma proteobacterium HdN1] gi|301797740|emb|CBL45962.1| Translocation protein in type III secretion [gamma proteobacterium HdN1] Length = 358 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 179/348 (51%), Gaps = 5/348 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + TE P+ K+IEDA +GN S++ L +++ Sbjct: 1 MAEKQSDQ--TELPTPKRIEDARRDGNVSRSQDLGKT---LLIPVWIGLLGGLLPVLFQR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +H + + ++++ ++ + + +++P + G+ +Q VL L Sbjct: 56 WIHYVRTTWQNLPPDNLNGLLDAMMSGAGVFLAILLPLIFFAAAIGVFIEFVQVGKVLAL 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 VKP R++ G+KR++S N V KS K L+ + I L + L + Sbjct: 116 KPVKPDLNRLNPAAGLKRMFSQRNFVELAKSVGKSSLIILLSMIVLRDQLGDTLKLPYGS 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ + T+R +LI + + + +D+ + + W L MS+++I+ E K S G+P Sbjct: 176 HETLFAVLWLTLRAMLISVTIAFLLIAAMDVAYQKYAWTKDLMMSRRDIQQEHKNSEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K +++++ + + M + A++++TNPTHYA+A+ Y + + D P++VAKG++ A Sbjct: 236 MLKGQRRALHQEWSQENAMGSVRGASVVVTNPTHYAVAIHYEKGKTDLPLVVAKGEDYFA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + +R+ A E +PI E LAR+L++ + +++ I F++AVAQL++ Sbjct: 296 RMIREAAQEAGVPIMENVDLARALYRDIDVHNPITSEFFEAVAQLLHW 343 >gi|170026112|ref|YP_001722617.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis YPIII] gi|169752646|gb|ACA70164.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis YPIII] Length = 355 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 155/339 (45%), Gaps = 5/339 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + ++ + + ++ +V+ ++ I + + Q P+L V Sbjct: 60 SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ + K+++S+ ++ MKS +K+ ++ I L + + L Sbjct: 120 ERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLIQYAPSFGYLTHCGSRCALPV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +L ++ +++D + + +LKMS E+K E K S G+P IK +++ Sbjct: 180 FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R+T ++ NPTH+A+ L Y E P+++ KG + A + +A Sbjct: 240 QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 300 EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338 >gi|167551609|ref|ZP_02345363.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168240935|ref|ZP_02665867.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194445677|ref|YP_002040673.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451297|ref|YP_002045425.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194404340|gb|ACF64562.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409601|gb|ACF69820.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205323578|gb|EDZ11417.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339685|gb|EDZ26449.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 352 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + +L S + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHVLIESLASVLLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|226225721|ref|YP_002759827.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27] gi|226088912|dbj|BAH37357.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27] Length = 366 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 181/354 (51%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+++ KTE S K++E+A +G S E + + +L L+ F + Sbjct: 1 MAESESGGEKTEEASGKRLEEAREKGQIAKSPEFATAAFLLGFLLVFSFTGPQLWRFLLD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + LA+A + + ++ + +S ++ + + + Q +L Sbjct: 61 TMGTSLATAGDSE-HMGAGLIPWMQVISFRTIVAMLGAVAAMAVVAVAVQAAQTGGLLTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179 + P F+R++ RI ++V K+ +K+++VG + +++++ + + ++A Sbjct: 120 KTLAPKFERLNPMSNAGRILGKQSIVELAKALLKMMIVGYAVYMTVSDAWPDLQALALNA 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P ++L ++ + L + D G+ + LKM+KQE+K+E K GN Sbjct: 180 SPMALLEVVQKYGFALIKNAGMMFLVLAMADYGYQRWKTMEDLKMTKQEVKEEHKSQEGN 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K R+++IAR RIR +M A +A +II NP H A+A++Y AP +VA G+ I Sbjct: 240 PEVKGRRRAIARERIRRQMFAAVPKADVIIVNPVHIAIAIKYDPNVAPAPYVVALGERKI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A++++++A++H +P+ E LAR+L K + + IP Y AVA+++ + ++ Sbjct: 300 AQRIKELAFQHGVPVIENKPLARALIKVAKVGTVIPVEMYLAVAEVLAFVMRQR 353 >gi|260222456|emb|CBA32037.1| hypothetical protein Csp_D30120 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 384 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 163/350 (46%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ S +K++ A ++G S++ S + + A + +L SP ++ Sbjct: 2 EQGSQDRNLPASERKLKKARDDGQVSRSQDLSHLAVLGAGAVAVLSL-SPILFEQLKLSM 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 V S + +V L S + + + M I + + V +L + Sbjct: 61 VQQLSFDAETVRRTGTMVQRLGDASTIGTAGCVAFAAIVMTAAILAAVASGGWVSSLKPL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P F R++ G ++S L++ K + ++ I + L M + + Sbjct: 121 MPDFSRLNPLSGFANLFSKKKLLDTAKMALMTAILFVIAGLFLKSGMQEMAAMLLQPSPA 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + H + L ++LL I ++D+ ++KMS QE+K+E K+S GNP +K Sbjct: 181 AISHLTQWMTGGLGLMLLVILLAAMVDVPLQLFLHKDQMKMSHQEVKEEGKESDGNPQLK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 + + R + + A +A ++ NPTH+A+A+RY + AP +V+KG +L+A K+ Sbjct: 241 GKIRQKQREMAQKSSVGAVPKADFVVMNPTHFAVAIRYDEASMRAPRVVSKGADLLAMKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R +A +H+IP+ + P LAR+L+ ++ IP Y AVAQ++ +Y + Sbjct: 301 RDVAKQHSIPVLQSPMLARALYANAELDQDIPSTLYTAVAQVLAYVYRLR 350 >gi|149203120|ref|ZP_01880091.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035] gi|149143666|gb|EDM31702.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035] Length = 362 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 2/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + +KT + K+++A +G S + + + L+ L + +V + Sbjct: 1 MAEQNDDSDKTLEATQHKLDEARKKGEFARSADLNTVGTYAGLLLALSLASGTPVETVGA 60 Query: 61 DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 +L L+ + Q + L ++ + LLL M+ + + + QR V+ Sbjct: 61 NLMTLVEHSDQLAKLIFQGGLGASALGGIAAQIVFGLSLFLLLPMVMALAAVIAQRAFVV 120 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++P R++ E K + L F KSF K+ L ++ LT M+ + Sbjct: 121 APTKIEPRVSRINPVENAKNKFGATGLFEFAKSFGKLFLYSLLLGGFLTYRLPEMMSTLH 180 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 A I + + +I++LL + LD W Y + +MS ++++DE+KQ+ G Sbjct: 181 AEAPIIGAVMGKLIIEFMIIVLLISLAIGGLDYLWQYFDHLRRQRMSHKDLRDELKQNDG 240 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K +++ A +MM A ++I NPTH+A+AL++ + AP VAKG + Sbjct: 241 DPAVKQQRRRRAMELASGRMMADVPTADVVIVNPTHFAVALKWSRKPGAAPTCVAKGMDH 300 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 IA +R +A E +PI E+ AR+L I I P Y AVA I Sbjct: 301 IALAIRDLARESGVPILEDAPTARALHATTEIGREIDPAHYAAVAVAIRF 350 >gi|167576637|ref|ZP_02369511.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis TXDOH] Length = 379 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 162/353 (45%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L L+ + + Sbjct: 1 MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKILVLLAPSWLAEFRA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T + L L+L +++ P ++ + +GS L+ +L+ Sbjct: 60 LFLLDLVDVTGDGALANAWSAALPASLAL-FLKMIAPFFVVPLCVVLGS-LLPGGWMLSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 H+KP F R++ + R+ S + F S +K + + ++ L Sbjct: 118 AHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAFLRLQHLP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L F + + + + D+ + + +M+KQE+KDE K + G P Sbjct: 178 LQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIAKGVDDMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 298 LAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|145297440|ref|YP_001140281.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida subsp. salmonicida A449] gi|142850212|gb|ABO88533.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida subsp. salmonicida A449] Length = 378 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+N A D KTE SS+K+ A EG S+E S +L + + + P + Sbjct: 1 MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQ-WMVPSFGHFFA 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + D ++ LS +++P + + ++ VL Sbjct: 59 ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + PS ++++ +G+KR+ S ++L+ +KS +KI+L+G+ + + L + ++ Sbjct: 119 KKLLPSAEKLNPLKGLKRMLSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + A + + I++ + VLD+ + +L+M+KQE+KDE K S G P Sbjct: 179 PQAAMEQALQILSQAFILLGSVQMLIAVLDVPYQRWSLNKQLRMTKQEVKDEHKNSEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + R ++ + +A +II N THYA+A++Y +AP ++AKG + +A Sbjct: 239 EIKAKIRQVQGMLARARIEQRVPQADVIIVNTTHYAVAIKYDPERANAPYVIAKGVDGMA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R++A +H+ + P L R+++ ++ +P Y AVA ++ + + Sbjct: 299 ERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVAYVLNHVLQLR 351 >gi|108809999|ref|YP_653915.1| secretion system apparatus protein SsaU [Yersinia pestis Antiqua] gi|108813554|ref|YP_649321.1| secretion system apparatus protein SsaU [Yersinia pestis Nepal516] gi|145600944|ref|YP_001165020.1| secretion system apparatus protein SsaU [Yersinia pestis Pestoides F] gi|150260678|ref|ZP_01917406.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|162421928|ref|YP_001608225.1| secretion system apparatus protein SsaU [Yersinia pestis Angola] gi|165926775|ref|ZP_02222607.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936397|ref|ZP_02224965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. IP275] gi|166010522|ref|ZP_02231420.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213930|ref|ZP_02239965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402227|ref|ZP_02307700.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167426123|ref|ZP_02317876.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467562|ref|ZP_02332266.1| type III secretion protein, YscU/HrpY family [Yersinia pestis FV-1] gi|218927480|ref|YP_002345355.1| secretion system apparatus protein SsaU [Yersinia pestis CO92] gi|229836528|ref|ZP_04456694.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|229840136|ref|ZP_04460295.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842217|ref|ZP_04462372.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904044|ref|ZP_04519157.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|270488971|ref|ZP_06206045.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27] gi|294502345|ref|YP_003566407.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] gi|108777202|gb|ABG19721.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|108781912|gb|ABG15970.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|115346091|emb|CAL18959.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|145212640|gb|ABP42047.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|149290086|gb|EDM40163.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|162354743|gb|ABX88691.1| type III secretion protein, YscU/HrpY family [Yersinia pestis Angola] gi|165915513|gb|EDR34122.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. IP275] gi|165921398|gb|EDR38622.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990612|gb|EDR42913.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204905|gb|EDR49385.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. B42003004] gi|167048408|gb|EDR59816.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054834|gb|EDR64636.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679814|gb|EEO75917.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|229690527|gb|EEO82581.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696502|gb|EEO86549.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706212|gb|EEO92220.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|262364375|gb|ACY60932.1| putative type III secretion apparatus protein [Yersinia pestis D182038] gi|270337475|gb|EFA48252.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27] gi|294352804|gb|ADE63145.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] Length = 355 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 155/341 (45%), Gaps = 5/341 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 K E P+ K++++A +G S E + ++A +IY L YS+ L+ Sbjct: 2 STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALI 57 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S+ + + ++ + + ++ +V+ ++ I + + Q P+L V Sbjct: 58 RSSIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSF 117 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ + K+++S+ ++ MKS +K+ ++ I L + + L Sbjct: 118 KGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCAL 177 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +L ++ +++D + + +LKMS E+K E K S G+P IK + Sbjct: 178 PVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQK 237 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + R+T ++ NPTH+A+ L Y E P+++ KG + A + Sbjct: 238 RRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVS 297 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 298 LAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338 >gi|83716504|ref|YP_438366.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis E264] gi|167614812|ref|ZP_02383447.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis Bt4] gi|257141397|ref|ZP_05589659.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis E264] gi|83650329|gb|ABC34393.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis E264] Length = 379 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 162/353 (45%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L L+ + + Sbjct: 1 MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKILVLLAPSWLAEFRA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T + L L+L +++ P ++ + +GS L+ +L+ Sbjct: 60 LFLLDLVDVTGDGALANAWSAALPASLAL-FLKMIAPFFVVPLCVVLGS-LLPGGWMLSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 H+KP F R++ + R+ S + F S +K + + ++ L Sbjct: 118 AHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAFLRLQHLP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L F + + + + D+ + + +M+KQE+KDE K + G P Sbjct: 178 LQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIAKGVDDMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 298 LAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|283782110|ref|YP_003372865.1| type III secretion exporter [Pirellula staleyi DSM 6068] gi|283440563|gb|ADB19005.1| type III secretion exporter [Pirellula staleyi DSM 6068] Length = 363 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 182/350 (52%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D K+ + + + A EG S++ + + + + LL++FS G++ + Sbjct: 2 DDDNGEKSHEATQHRRDKAREEGQVVKSQDLTSAAML-MACLLLLWYFSSGMFELVGAFT 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + ++ + + +R ++P LL+ M+ I L Q + N + Sbjct: 61 RDQITGQLWQPITLADVTSDFARIGGLLARTLLPLLLMMMLAAITIQLSQTGFLFLPNKL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +R++ KRI++++NLV+ +K++L+G + +SL + T+L+ + Sbjct: 121 AMDLERINPLNNSKRIFAVSNLVSLGFGLLKVLLIGVVAGLSLWQQRATILELTDQSAAV 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I T I I + L +LD G+ + + L+M+ Q++++E+K+ G+P Sbjct: 181 IGKFVLETALWTSIKIAAALLVLAILDYGYQWWKHEQDLRMTTQQVREEMKEQTGDPQTM 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R+K I R + +++ + +A +I+TNPT A+AL+Y AP+++AKG ++A+++ Sbjct: 241 QRRKQIQRQLVMNRLSTSIPKADVIVTNPTELAIALQYDPNTMPAPIVIAKGAGVLAQRI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R++A E+N+P+ E LAR+L++ V +N +P Y AVA+++ +Y K Sbjct: 301 RRLALENNVPVVERKELARALYQLVEVNQPVPSEQYAAVAEVVRYVYQLK 350 >gi|153948750|ref|YP_001402765.1| secretion system apparatus protein SsaU [Yersinia pseudotuberculosis IP 31758] gi|152960245|gb|ABS47706.1| type III secretion protein, YscU/HrpY family [Yersinia pseudotuberculosis IP 31758] Length = 356 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 155/341 (45%), Gaps = 5/341 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 K E P+ K++++A +G S E + ++A +IY L YS+ L+ Sbjct: 3 STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALI 58 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S+ + + ++ + + ++ +V+ ++ I + + Q P+L V Sbjct: 59 RSSIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSF 118 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +R++ + K+++S+ ++ MKS +K+ ++ I L + + L Sbjct: 119 KGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCAL 178 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +L ++ +++D + + +LKMS E+K E K S G+P IK + Sbjct: 179 PVFSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQK 238 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + R+T ++ NPTH+A+ L Y E P+++ KG + A + Sbjct: 239 RRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVS 298 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 299 LAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339 >gi|170748648|ref|YP_001754908.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans JCM 2831] gi|170655170|gb|ACB24225.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans JCM 2831] Length = 355 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 177/340 (52%), Gaps = 2/340 (0%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 PS ++++ A+ G+ S E + F+ + A + LL ++ L LA+A Sbjct: 14 PSQRRLDQAIERGDVATSTEINTFAMLGAFTLALLVAAPTIATNLLHGLKAYLANAHALP 73 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 + + + L L + +P + L ++ G+ + L+Q V + + P F R+S Sbjct: 74 DDAAAMKAAMTRGLWLWLQAVAVP-VGLAVVAGLAAGLLQHPLVFSAETLMPKFSRLSPM 132 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 G+KR+ + L F K KI VG + + L + + F +P + + Sbjct: 133 AGVKRLLGVEALFQFGKGLAKIAAVGVVGAVMLWNDRDRLEVFARLDPAASMPAILSLSL 192 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 K+L +L +T+ D ++ +W + +MSK+E+K E+K+S GNP +K R K + +R Sbjct: 193 KLLAGMLCMHLAITLGDALYARFRWRKRHRMSKEELKQEMKESEGNPEVKGRLKQLRMAR 252 Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 ++ +MM A AT+++TNPTHYA+ALRY APV VAKG + +A ++R +A EH + Sbjct: 253 VKKRMMAAVPTATVVVTNPTHYAVALRYETG-MAAPVCVAKGVDALALRIRAVAAEHGVA 311 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + E P LAR+L V I+ IP Y+AVA++I + + Sbjct: 312 VIENPPLARALHATVEIDREIPAEHYRAVAEVIGFVLRLR 351 >gi|148553141|ref|YP_001260723.1| flagellar biosynthesis protein FlhB [Sphingomonas wittichii RW1] gi|148498331|gb|ABQ66585.1| type III secretion exporter [Sphingomonas wittichii RW1] Length = 379 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 84/352 (23%), Positives = 168/352 (47%), Gaps = 2/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTEAP+ K+ +DA +G+ SRE ++ ++ + ++ Sbjct: 1 MAEGPEDDEKTEAPTPKRRQDAAEKGDVLQSRELGTALVMVVGAGWIAIAGPWAMAALKR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L S +E+ + L ++ A L++ L ++ + Sbjct: 61 MLSNAL-SFDAGAIENFDPLSAALAMVATVALPLLLLFALTLAAAIAAPAMLGSLG-FRW 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + +++ G+KRI+ + L+ KS +KI+ +G + L + ++ + Sbjct: 119 SALGFKANKLNPMAGLKRIFGMQGLIELGKSLLKILALGAVGYWLLMDRIAAIVTMGQQD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L T ++++ L +A + D+ Q +L+MSKQEIK+E KQ+ G+P Sbjct: 179 LRTALDSLGSTFVFAVLVMTLALAVVAGADVPMQMFQRGKRLRMSKQEIKEESKQTEGSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + +A AT+++TNPTH+A+ALRY + APV++A+G+ A Sbjct: 239 ELKAAIRQKQMAAAMGSARKAVVEATVVLTNPTHFAVALRYRPGFDTAPVVLARGRGATA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + +R++A E+++P+ P L R+++ I + AVA ++ +++ Sbjct: 299 QAIRELATENSVPMLHYPQLTRAIYYTSRSGQVIREDLFIAVAAILAFVFNL 350 >gi|213854181|ref|ZP_03382713.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 352 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 150/343 (43%), Gaps = 3/343 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLG---AEVIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + IP+ E LARSLF +V IP ++ VA L+ + Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342 >gi|213581364|ref|ZP_03363190.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 338 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 150/338 (44%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + IP+ E LARSLF +V IP ++ VA L+ Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337 >gi|256831232|ref|YP_003159960.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM 4028] gi|256580408|gb|ACU91544.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM 4028] Length = 355 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 176/354 (49%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D +TE + K+ A +GN P S+E ++L L+ L + + + Sbjct: 1 MAQHDPS--RTENATPKRRNKARGQGNVPKSQELPKPLTLLFGLLMLQLYLGTIRTEIEN 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +H +L + + L S S +V+P +++ + +Q + Sbjct: 59 LMHWFFTEGFVFEL-TPASVYTLFRDCLYSISLMVLPIMIVIAVAAFIVVRLQVGKLWAP 117 Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 KP FK ++ G+K++ S V KS V I L + + ++ Sbjct: 118 KVFKPQFKMFNVLSGLKKLLISKQTFVRLAKSIFMAAAVAIGPYIVLKQAFGEVIPLFYQ 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 SI + + + + L + + + D+ ++ + LKM+K E+KDE KQ+ G+ Sbjct: 178 PAESIAAYVLKSGQTMFYYALTPMILIGIADLLYTRWDYEENLKMTKSEVKDERKQAEGD 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK++Q+ + + +MM+ +A ++ITNPTH A+A+RY E AP+++AKG + Sbjct: 238 PAIKSKQRQKMMAVMMRRMMQDVPKADVVITNPTHLAIAIRYNAMEAPAPMVLAKGAGAV 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A++++ IA E+N+PI E LAR+L+K + + IP FY+AVA ++ +IY K Sbjct: 298 AQRIKDIARENNVPIRENKPLARALYKVIEVGDTIPEEFYQAVAAILAQIYKTK 351 >gi|22124447|ref|NP_667870.1| secretion system apparatus protein SsaU [Yersinia pestis KIM 10] gi|45440283|ref|NP_991822.1| secretion system apparatus protein SsaU [Yersinia pestis biovar Microtus str. 91001] gi|167418837|ref|ZP_02310590.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|21957234|gb|AAM84121.1|AE013654_10 putative type III secretion system component [Yersinia pestis KIM 10] gi|45435139|gb|AAS60699.1| putative type III secretion system component [Yersinia pestis biovar Microtus str. 91001] gi|166962831|gb|EDR58852.1| type III secretion protein, YscU/HrpY family [Yersinia pestis biovar Orientalis str. MG05-1020] Length = 356 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 155/339 (45%), Gaps = 5/339 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 5 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + ++ + + ++ +V+ ++ I + + Q P+L V Sbjct: 61 SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG 120 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ + K+++S+ ++ MKS +K+ ++ I L + + L Sbjct: 121 ERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPV 180 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +L ++ +++D + + +LKMS E+K E K S G+P IK +++ Sbjct: 181 FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR 240 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R+T ++ NPTH+A+ L Y E P+++ KG + A + +A Sbjct: 241 QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA 300 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + IP+ E +LAR+L + V IP F++ VA L+ Sbjct: 301 EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339 >gi|254488460|ref|ZP_05101665.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101] gi|214045329|gb|EEB85967.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101] Length = 361 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ +++K+ +A +G+ S + + + + S GI +++ Sbjct: 1 MSGEDDDSDKSFEATAEKLLEARRKGDIAKSTDLMTAAGYAGLFVAFAYVGSEGIALIST 60 Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L VLL + + + L +S +P LL + + + QR V Sbjct: 61 ALMVLLDQPDRLIDIFFDGSAAAPASGLIISIILPALPIFLLPAIAVLVAIAAQRAFVFA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + P R+SL K + N L F KSF K+ + + + + N M+ + Sbjct: 121 PSKIAPKLSRISLISNAKNKFGRNGLFEFAKSFFKLCIYSICLVLFIRANLHEMIAALQT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 +P S + L++ +L AT+ +D W + + K +MS++EI+DE K S G+ Sbjct: 181 DPASAISLMIEICLSFLLVTILISATIGGIDALWQHFEHLRKNRMSRKEIQDEQKNSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++ A + +MM +A +II NPTHYA+AL++ + +APV VAKG + I Sbjct: 241 PHLKQERRQRAMIVSQSQMMADVPKADVIIVNPTHYAVALKWSRLPGEAPVCVAKGVDEI 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 AK +R E +P+ +P AR+L I I P ++AVA I Sbjct: 301 AKAIRLKGAEAGVPLHSDPPTARALHATTDIGDMIAPEHFQAVAAAIRF 349 >gi|54124949|gb|AAV30217.1| AscU [Aeromonas hydrophila] Length = 352 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 176/347 (50%), Gaps = 3/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KK+ DA N+G S+E + IL+ + L+ + + + + Sbjct: 2 SGEKTEQPTAKKLRDARNKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMLIPE 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + ++H+V +L + L IP L + + + S++ Q +L+ +KP Sbjct: 62 SHLNLPFSQALNHVV---ENLLQELAYLCIPILAVSALVVLVSHIAQYGFLLSGESIKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K+++ EG K+I+SI +L+ F+KS +K+ L+ ++ +++ N ML I Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIEGNLQAMLQLPGCGMSCIPP 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ + + + + D + +HQ +LKMSK E+K E K+ G+P +K+++ Sbjct: 179 VLGGMLGQLMAVCAMGFVVIAIADYAFEHHQHIKQLKMSKGEVKREYKEMEGSPEVKSKR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + M R+++I+ NPTH A+ +RY + E PV+ K + A + KI Sbjct: 239 RQFHQELQPSNMRADVKRSSVIVANPTHIAIGIRYGRGETPLPVVTLKFTDAQALLVCKI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E IP+ + LAR+L++ IN+ IP +A A+++ + + Sbjct: 299 AEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVLRWLEQWR 345 >gi|160896049|ref|YP_001561631.1| type III secretion exporter [Delftia acidovorans SPH-1] gi|160361633|gb|ABX33246.1| type III secretion exporter [Delftia acidovorans SPH-1] Length = 391 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 172/349 (49%), Gaps = 1/349 (0%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D+ +K+ + +K++ ++G SR+ S + + + +L P I + L Sbjct: 2 DSSQDKSLPATERKLQKTRSDGQGARSRDLSHLAILGTGALMMLMGAEPLIQHLRMALAQ 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LA + + ++ + + ++ + + + S ++ +L+L ++ Sbjct: 62 QLA-FDAHTAKTPALMMERMLSMGSLGLKISLVVAAVTTGAALVSGMLAGGWILSLKPIQ 120 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P F R++ G+ ++S +V +K V ++ + L+ + + S Sbjct: 121 PQFNRLNPLSGLTNLFSKQQMVTVVKMVVMTAILSFVAWKFLSSHLAEIAAISSQPSAMA 180 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L + + ++LL + + V+D+ + + S+LKMS +E+K E K+S GNP IK+ Sbjct: 181 LSMTGQWLASGVALLLLVVFLMAVIDVPLQAYLFKSRLKMSHEEVKQEHKESDGNPQIKS 240 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 + + R + A RA ++TNPTHYA+ALRY + AP +++KG +L+A K+R Sbjct: 241 KIRQKQREIADRASVNAVPRADFVVTNPTHYAVALRYDEKTMAAPQVISKGTDLVALKIR 300 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++A H IP+ E P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 301 EVAGAHKIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349 >gi|317153078|ref|YP_004121126.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2] gi|316943329|gb|ADU62380.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2] Length = 353 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 97/355 (27%), Positives = 177/355 (49%), Gaps = 6/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + KTE ++K+ + NEGN P S E + +L ++ L Sbjct: 1 MAQDPS---KTEKATTKRRKRTRNEGNVPKSSELTKAIVLLMGVLTLRSLIGFYQDQFIE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 KL D S L + +V+P L + + +Q + Sbjct: 58 IYEWTFREGIHTKL-DPSTTYALFVWGVKKLAIIVLPLLFVLAFTAWLTLRLQVGGLWTT 116 Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +KP F ++ ++ G+KR+ S V +S ++ + VG I + + +L Sbjct: 117 KPMKPKFAKMFNIVAGLKRLLISPQAFVRLGRSILQALAVGIAPYIVIKQELPNLLPLFH 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 A+ H I+ + K+ L+ + + + D+ +S ++ +KM+K EIKDE +Q+ G Sbjct: 177 ASTHGIIAYILGVGYKMACYALVPMLLIAIADLWYSRWKYEEGIKMTKDEIKDERRQAEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK +Q+ + +M + +A ++ITNPTH+A+AL+Y AP+++AKG N Sbjct: 237 DPHIKRKQQQKMLQMMASRMFKDIPKADVVITNPTHFAVALQYDALVAPAPLVLAKGVNR 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A++++++A E++IPI P LAR+L+KQV I IP ++AVA ++ K+ K Sbjct: 297 VAERIKEVARENSIPIEVNPPLARALYKQVEIGETIPEEMFQAVAAILAKLDKFK 351 >gi|46200838|ref|ZP_00207865.1| COG1377: Flagellar biosynthesis pathway, component FlhB [Magnetospirillum magnetotacticum MS-1] Length = 324 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 180/320 (56%), Gaps = 1/320 (0%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 +++S++ L+ + F + L + +E S + LL+ +++ + Sbjct: 1 MKMWASLVGALVIITLFAPYMARDMGRLLLPFIEHPHAFPMEQ-SDVGNLLSMITMDMLK 59 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 +++ +++ ++ + S + Q + + + F ++S +GI RI+S NLV F KS Sbjct: 60 ILVLPMMMLVVLALVSAMGQSGLMFLPDKLTMDFSKLSPMKGITRIFSGRNLVEFAKSLF 119 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 K+ +G +I + L + + + ++L + V ++++++L + L D + Sbjct: 120 KVSAIGFVIFLVLKSHMSEYAGLAALDLMAVLDYMRHQVIAMIMIVVLMVFVLAAADWFY 179 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 + ++KM+KQEIKDE KQ+ G+P+IK R +++ R R +MM A +A++++TNPT Sbjct: 180 QRWAFNQQMKMTKQEIKDEHKQTEGDPMIKGRLRALRMQRARQRMMAAVPKASVVVTNPT 239 Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 HYA+AL+Y Q APVLVAKG +LIAK++R +A E+ +PI E P LAR+L+ V ++ Sbjct: 240 HYAVALQYDQDSMGAPVLVAKGVDLIAKRIRDLATENEVPIVENPPLARALYATVELDEE 299 Query: 334 IPPVFYKAVAQLIYKIYHKK 353 IPP YK VA++I + K Sbjct: 300 IPPEHYKTVAEIIGYVMKLK 319 >gi|170743254|ref|YP_001771909.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46] gi|168197528|gb|ACA19475.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46] Length = 353 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ +++TE P+ K+++DA+ G+ S E + + + LL + Sbjct: 1 MAGEGEQEDRTEEPTQKRLDDAIKRGDVATSTEINTLLLLGGFTLVLLVGAGSIARGLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L LLA Q D + L + + + + + + L+Q V Sbjct: 61 ELRDLLAGLHQVP-GDAAGYAALARRALAALALALAAPVGAAVAAALVGGLLQHPLVWTT 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++RVS G+KR++ F K +K+ LVGT+ + L + + Sbjct: 120 ETLGAKWERVSPAAGLKRLFGPEAWFQFGKGILKVALVGTVAALVLWGDRDRLDALARLE 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P ++L V +++ IL + + D + +W ++L+M+K EIK+E+K+S G+P Sbjct: 180 PSALLPATLALVLRLMAGILAAYLVIALGDAAYQRLRWRARLRMTKAEIKEEMKESEGSP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I +R + +MM A AT+++ NPTH+A+AL Y APV VAKG +++A Sbjct: 240 EVKARLRRIRATRAKKRMMAAVPGATVVVANPTHFAVALLYETG-MAAPVCVAKGVDVLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A E+ +P+ E P LAR+L V I+ AIP YKAVA++I + ++ Sbjct: 299 LRIRALAAENGVPVVENPPLARALHATVEIDQAIPTEHYKAVAEVIGFVLRQQ 351 >gi|162147444|ref|YP_001601905.1| flagellar biosynthetic protein flhB [Gluconacetobacter diazotrophicus PAl 5] gi|209545554|ref|YP_002277783.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl 5] gi|161786021|emb|CAP55603.1| putative flagellar biosynthetic protein flhB [Gluconacetobacter diazotrophicus PAl 5] gi|209533231|gb|ACI53168.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl 5] Length = 358 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 170/353 (48%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E K++ P+ K++E A EGN SRE + + + L+ + + Sbjct: 1 MAEGSGGGEKSQDPTGKRLETAREEGNVAQSRELLMLAILGGFLLVFTMATADSARRFVA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + D++ I + +L L P + + I ++Q + Sbjct: 61 HVGGTMEHFDSIP-TDMTSIYRIAVQTALEGVLLAAPLVFTGFVVTIACGMLQTGFLYRP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R+S G++R++ + N+V +KS K ++ G ++ + + Sbjct: 120 QAILPDITRLSPMRGLQRMFGMTNVVEMLKSLTKFVVFGVVLYAVAKGTLHVAPEAERWS 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ ++++LL + +LD W+ + L+MS Q+IKDE +Q+ G+P Sbjct: 180 MLRLVSELSSWFAYAVLVVLLVQCVIAILDDLWTRYHRIVGLRMSFQDIKDEFRQTEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R K + R R R +M++A AT++ITNPTHYA+AL Y + AP +VA G + +A Sbjct: 240 KVKGRLKQMRRRRARRRMLQAVKTATVVITNPTHYAVALSYESGADSAPKIVASGTDELA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R A + +P+ P LAR+L +P++S IP +++ VA +I + K Sbjct: 300 ARIRHAAEDAKVPVVANPPLARALHA-LPLDSEIPSEYFQPVAAIIAYVMKLK 351 >gi|312876517|ref|ZP_07736500.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A] gi|311796728|gb|EFR13074.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A] Length = 303 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 159/295 (53%) Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 S LED+ LL+ + ++ ++++P L M+ Q ++ Sbjct: 1 MQQGSKYFFSNLNYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLI 60 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +K SF++++ EG KRI+SIN++V +KS +K++++G +L+ Sbjct: 61 TGQSLKMSFQKINPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYG 120 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 N +I+ + + +++ + + + V+D + Q+ KL M+K+E+K+E KQ+ G Sbjct: 121 MNVLTIVKFSLDSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEG 180 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 NP IK++ + R +M + +A ++ITNPTHYA+AL Y + DAP ++AKG++ Sbjct: 181 NPQIKSKIRERQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDY 240 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA K+++ A +H I I E LAR+L+ I IPP Y+AVA+++ +Y K Sbjct: 241 IALKIKQEAIKHRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 295 >gi|33596846|ref|NP_884489.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33600620|ref|NP_888180.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568219|emb|CAE32132.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33573547|emb|CAE37538.1| putative type III secretion protein [Bordetella parapertussis] Length = 349 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ K++ D+ +G SR+ + + I A + L + S+ + + Sbjct: 2 SGEKTEQPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPA 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A A Q + +LT + A R++ P +L+ + G+ + +Q VL +KPS Sbjct: 62 AFADQAF---AVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPS 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++++ +K I+S NL+ F+KS KI+ + ++T+ + ++ ++ + + Sbjct: 119 AEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDSLQPLMAVPHSGLDGLRT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ ++ I L +++ D+ W +Q+ L+MSK E+K E K+ G+P IK ++ Sbjct: 179 GVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K + + I H RAT+++TNPTH A+AL Y E P ++A GQ +A M + Sbjct: 239 KHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEA 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A + +P+ + +LAR+L Q ++ IP + VA ++ + Sbjct: 299 ARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAVRQ 343 >gi|329942812|ref|ZP_08291591.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10] gi|332287404|ref|YP_004422305.1| type III secretion system protein [Chlamydophila psittaci 6BC] gi|313847984|emb|CBY16981.1| putative membrane transport protein [Chlamydophila psittaci RD1] gi|325506497|gb|ADZ18135.1| type III secretion system protein [Chlamydophila psittaci 6BC] gi|328815072|gb|EGF85061.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10] gi|328914653|gb|AEB55486.1| type III secretion protein, hrpY/hrcU family [Chlamydophila psittaci 6BC] Length = 360 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A D ++ L + +P L GI + P + KP Sbjct: 62 EAPIN--HDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P I Sbjct: 120 KKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIVETAGVSPIVIAVI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ IPI LA L+ + IP Y+A+ +++ I Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344 >gi|227876759|ref|ZP_03994868.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC 35243] gi|307701577|ref|ZP_07638594.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris FB024-16] gi|227842656|gb|EEJ52856.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC 35243] gi|307613256|gb|EFN92508.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris FB024-16] Length = 373 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 177/354 (50%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ KTE + ++ +G S++ + + S+ A L ++ Sbjct: 1 MSD---SGEKTEKATPHHLKKVREDGGLQKSQDLTGWISLAAGAALLPSLMDTAGHNGRE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119 + + + + I+ L ++P +L M+ + +IQ V + Sbjct: 58 QIAAVRELVNGVSM---TEILGFLGQSLQGVLWTLLPFMLAIMLVAVLVNIIQGKGVFPS 114 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 H+KP + ++L +G+K+I + L N +K+ +K + VG ++ + ++ M Sbjct: 115 AKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALLKTVAVGVVLYLIISGVMEIMGAAGHM 174 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + ++ ++ +++LD + + + + KMSKQE+K+E KQ G+ Sbjct: 175 SGRDLVNYGTDKMWLLIWASVIAGIVVSILDALFIFKKNQKQTKMSKQEVKEEYKQQEGD 234 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK++++S A R++MM + A +++ NPTHYA+AL+Y + AP +VAKG + + Sbjct: 235 PQIKSQRRSRALQMSRNRMMNDAAEADVVVVNPTHYAVALKYEPGQ-GAPKVVAKGVDHL 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R+IA ++ +P+ E+ +LAR+L+ I IP Y AVAQ++ K Sbjct: 294 ASRIREIALDNRVPMVEDVALARTLYSTAEIGVEIPEELYTAVAQVLAFCLLLK 347 >gi|171316786|ref|ZP_02905997.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] gi|171098044|gb|EDT42860.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] Length = 377 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 85/344 (24%), Positives = 165/344 (47%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ K++ DA +G S E S + ++C+ LL+F + + + Sbjct: 18 SGEKTELPTPKRLRDARKDGQTSKSTEISDTIA-MSCVAALLWFAGNHFSDMVRGIVAVA 76 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + E + L ++ + A +V+P + + G Q V+ + + P Sbjct: 77 LEFSHPDAEQ-KALDASLYNIGMHAISVVLPCVFAGAIAATGISFAQVGAVIAMKPIVPK 135 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + V+ G+KR++S+ + +K+ VK +LVGT++ +++ + ++ + + Sbjct: 136 LENVNPAAGLKRMFSLRTAIELIKTIVKALLVGTVMWFAVSALFPLVVGSLHQPLAGLSV 195 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K++ + + + ++D+ + ++KMSK +IK E KQ G+P+IK + Sbjct: 196 MFWELWLKLIAIACIAFLIIGIVDLKLQKVMFIRQMKMSKDDIKREHKQQEGDPLIKGER 255 Query: 247 KSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +AR +A A +++ NPTHYA+ALRY E+ P +V KG + A +R Sbjct: 256 LRLARELATSAPEKKAVGLANVVLVNPTHYAVALRYAPHEHPLPRVVEKGMDASAALIRH 315 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E P+ P +AR+L+K V I +P ++ VA ++ + Sbjct: 316 YAEELGTPVIGNPPVARALYK-VDIGGPVPRELHETVAAILRWV 358 >gi|291276831|ref|YP_003516603.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] gi|290964025|emb|CBG39864.1| flagellar biosynthetic protein [Helicobacter mustelae 12198] Length = 364 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 171/355 (48%), Gaps = 8/355 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ K EAPS++KI+ A EGN S E F S + + + F + ++ Sbjct: 1 MADE---QEKQEAPSARKIQKAREEGNVAKSPELVAFVSFVIGIFAVFGIFPFWLQNIKG 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + + L L +++P L + G+ +IQ +L Sbjct: 58 IYITCLQFFSME--FSLGNFFDLFLKLLWQTLLIILPVLGALLFAGVFGNIIQVGFLLAP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ G+K ++S L+ + +K+ + + L + + N Sbjct: 116 KVLQPKLGKLNPIAGLKNLFSFKKLLEGLLITLKVFVAFLLGGAILIHFLRQIPNVAMLN 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S ++ +L+ + ++D Q+ L+MSKQE+KDE KQ GNP Sbjct: 176 VFSQAIWVRDKALILIASLLVLFFVMAIIDFLIKKFQYTKSLRMSKQELKDEYKQQEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + I KMM+A A +++TNPTHYA+ALR+ + AP++VAKG + +A Sbjct: 236 EVKAKIRQIMMKNTMGKMMQAIPNADVVVTNPTHYAIALRFAPN-DPAPIVVAKGIDHLA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKK 353 +++ IA E+ I I E P LAR+L+KQV + IP ++AVA + ++ + +K Sbjct: 295 IRIKGIARENEIEIVENPKLARALYKQVDLEEPIPRELFEAVAIIFAQLKKFQEK 349 >gi|269976286|ref|ZP_06183282.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1] gi|306817706|ref|ZP_07451448.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC 35239] gi|269935615|gb|EEZ92153.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1] gi|304649520|gb|EFM46803.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC 35239] Length = 373 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 177/354 (50%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ KTE + ++ +G S++ + + S+ A L ++ Sbjct: 1 MSD---SGEKTEKATPHHLKKVREDGGLQKSQDLTGWISLAAGAALLPSLMDTAGHNGRE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119 + + + + I+ L ++P +L M+ + +IQ V + Sbjct: 58 QIAAVRELVNGVSM---TEILGFLGQSLQGVLWTLLPFMLAIMLVAVLVNIIQGKGVFPS 114 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 H+KP + ++L +G+K+I + L N +K+ +K + VG ++ + ++ M Sbjct: 115 AKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALLKTVAVGVVLYLIISGVMEIMGAAGHM 174 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + ++ + + ++ ++ +++LD + + + + KMSKQE+K+E KQ G+ Sbjct: 175 SGRDLVNYGTDKMWLLIWASVIAGIVVSILDALFIFKKNQKQTKMSKQEVKEEYKQQEGD 234 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK++++S A R++MM + A +++ NPTHYA+AL+Y + AP +VAKG + + Sbjct: 235 PQIKSQRRSRALQMSRNRMMNDAAGADVVVVNPTHYAVALKYEPGQ-GAPKVVAKGVDHL 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R+IA ++ +P+ E+ +LAR+L+ I IP Y AVAQ++ K Sbjct: 294 ASRIREIALDNRVPMVEDVALARTLYSTAEIGVEIPEELYTAVAQVLAFCLLLK 347 >gi|33593237|ref|NP_880881.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603237|emb|CAC79582.1| bscU [Bordetella pertussis Tohama I] gi|33563612|emb|CAE42513.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382646|gb|AEE67493.1| putative type III secretion protein [Bordetella pertussis CS] Length = 349 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ K++ D+ +G SR+ + + I A + L + S+ + + Sbjct: 2 SGEKTERPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPA 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A A Q + +LT + A R++ P +L+ + G+ + +Q VL +KPS Sbjct: 62 AFADQGF---AVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPS 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++++ +K I+S NL+ F+KS KI+ + ++T+ + ++ ++ + + Sbjct: 119 AEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDSLQPLMAVPHSGLDGLRT 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ ++ I L +++ D+ W +Q+ L+MSK E+K E K+ G+P IK ++ Sbjct: 179 GVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K + + I H RAT+++TNPTH A+AL Y E P ++A GQ +A M + Sbjct: 239 KHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEA 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A + +P+ + +LAR+L Q ++ IP + VA ++ + Sbjct: 299 ARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAVRQ 343 >gi|171322350|ref|ZP_02911175.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] gi|171092322|gb|EDT37690.1| type III secretion protein, YscU/HrpY family [Burkholderia ambifaria MEX-5] Length = 360 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 167/350 (47%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E KTE PS +K++ +G S++ + ++ A + L S ++ Sbjct: 1 MAE-----EKTEEPSERKLKKVREKGQIAKSKDVADAVTLAAAIGVLTAGESMLTGGLSR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L L+ SA+ ++P ++ ++ GI S Q ++ L Sbjct: 56 TIRTALDFVNGER--TPQATLSALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F ++ GIK+I+S+ +L+ +K VK +++ +I + + ++ + Sbjct: 114 EPVMPKFDAINPMAGIKKIFSMKSLLELVKMIVKAVVLACVIWKMMMSLFPLVVASVYEA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + K+L ++ L + D + + +M+K+E K E K+S G+P Sbjct: 174 TPQLSRVLWTVLMKLLGVVALVVTVFAAADYKIARMMFMRDNRMTKEEAKRENKESEGDP 233 Query: 241 IIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K + Sbjct: 234 HTKGERRRLAREIATSAPARQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A+ +PI P +AR+L++ V ++AIP ++ VA ++ + Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-VERDAAIPEELFETVAAILRWV 342 >gi|126442503|ref|YP_001061219.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668] gi|254182916|ref|ZP_04889509.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] gi|126221994|gb|ABN85499.1| flagellar biosynthesis pathway, component FlhB [Burkholderia pseudomallei 668] gi|184213450|gb|EDU10493.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 1655] Length = 379 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 79/353 (22%), Positives = 159/353 (45%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L L+ + + Sbjct: 1 MANQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T +++ + +S++ +I + + + L+ +L+ Sbjct: 60 LFLLELVDVTGDG--ALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPGGWILSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F R++ + R+ S + F S +K + + ++ L Sbjct: 118 AQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L F + + + + D+ + + +M+KQE+KDE K + G P Sbjct: 178 LQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 298 LAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|332701286|ref|ZP_08421374.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str. Walvis Bay] gi|332551435|gb|EGJ48479.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str. Walvis Bay] Length = 357 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 182/353 (51%), Gaps = 5/353 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +KTE+ ++K+ + + +EGN P S+E S + IL L+ L + S Sbjct: 3 QSDPSKTESATAKRRKKSRDEGNVPRSQELSKLAVILVGLLVLRLLIGFIGDEMKSLFAS 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L++ +L + L L++ +++++P L + IQ + K Sbjct: 63 FLSNWGNLEL-TTEGLYILFVDLAVHLAKMLLPVLFSLALAAFVINRIQVGQLWTTKVFK 121 Query: 125 PSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 P ++ ++ GIKR I++++ V +S + V I L +L S Sbjct: 122 PKMEKFVNIVGGIKRLIFNVDAFVRLARSILGAAAVAIGPIILLRHEMNNLLPLFSQTTE 181 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + K+++ L+ + T+ V+D ++ + KLKM+K E+KDE KQ+ G+P I Sbjct: 182 GIAVYMLTVSYKMVLYSLIPMITVAVIDTVYTRWDYEEKLKMTKDEVKDERKQAEGDPKI 241 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 + RQK + +M+ +A +++TNPTH+A+AL Y ++ AP++VAKG + +AK+ Sbjct: 242 RQRQKQKMMAMSMSRMLHNVPKADVVVTNPTHFAVALSYDLSKAPAPLVVAKGADHMAKR 301 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKK 353 +R++A E +PI E LAR+L+ QV + IP YKAVA ++ ++ + KK Sbjct: 302 IREMAREAGVPIRENKPLARALYDQVEVGDIIPEDLYKAVATILARLHKFRKK 354 >gi|56695095|ref|YP_165442.1| flagellar biosynthesis protein FlhB [Ruegeria pomeroyi DSS-3] gi|56676832|gb|AAV93498.1| flagellar biosynthetic protein FlhB [Ruegeria pomeroyi DSS-3] Length = 362 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ P+ +K++ A +G S + S+ ++ L+ L + I + + Sbjct: 1 MSGQDDDSDKSYEPTPQKLQKAREKGEVAKSADLSVVAAYAGLLLALSALGAASITKLGT 60 Query: 61 DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L VL+ A +L V + L + ++P L+ I S + QR V+ Sbjct: 61 ALTVLIGQADGLSRLVFEGRAVGPVGGLMGTVGASILPWFLVPAAAVILSVVAQRAFVMA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + P R+S+ + K + L F KSFVK++L + + N ++ Sbjct: 121 PSKLVPKISRISILQNAKNKFGRGGLFEFAKSFVKLLLYSVCLGFFIKLNLSDIVSSAGM 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + + + ++ + +D W + + K MS++E+ DE K + G+ Sbjct: 181 EARQSVLLMARLLMRFMFLVATVALVIGAIDYLWQHAEHIRKNMMSRKELMDETKDAEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K +++ + ++M+ A ++I NPTHYA+AL++ + APV VAKG + + Sbjct: 241 PHMKQKRRQKGQEIAMNQMLADVPGADVVIVNPTHYAVALKWSRLPGAAPVCVAKGVDEV 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A +R+ A E +PI +P AR+L V I I Y+ VA I Sbjct: 301 AAAIRRSAAEAGVPIHSDPPTARALHAGVEIGQEISEEHYRPVAAAIRF 349 >gi|32490783|ref|NP_871037.1| hypothetical protein WGLp034 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165989|dbj|BAC24180.1| flhB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 385 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 97/356 (27%), Positives = 172/356 (48%), Gaps = 9/356 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D K E P+ +++ A ++GN P SRE + FS ++ I + F + + + Sbjct: 1 MSNKDE-LEKQEDPTPNRLKKARSKGNIPRSRELTSFSILIFGWILIWFTGNNLLDKIIV 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG---SYLIQRIPV 117 +L L KL HI ++L ++ L + + + + I S + V Sbjct: 60 ELKKNL----NFKLYLYEHINYILVNIYLISKKFFFIIFPIIFIIMIITIISSGLLGGWV 115 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + F R++ + I RI+S N + K+ K + L F + D Sbjct: 116 FSKKSLNIDFSRLNPYKNISRIFSKNVFIEMAKTLFKFFFMLFSCIFYLWHTRFQISDLS 175 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 N + + + + K + +I+L + D + + L+MSK+E++DE K++ Sbjct: 176 DNNYSNAIKNCILIISKCVFVIILSSIPIVFFDSIFQLFTFKKNLRMSKKEVQDENKENE 235 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 GNP +K+ + R +MM+ ++ +II NPT+YA+ L+Y + APVL+AKG Sbjct: 236 GNPQLKHYIRKKQRHIYNMRMMQNVEKSDVIIVNPTNYAVGLKYEKN-MKAPVLLAKGTG 294 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA K+++ A E IPI P LAR+++K I IP Y++VA+++ +Y+ K Sbjct: 295 NIAIKIKEKAQEKFIPIIAVPPLARAIYKYCNIGEYIPIELYESVAEILTWVYNLK 350 >gi|225181592|ref|ZP_03735033.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1] gi|225167700|gb|EEG76510.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1] Length = 309 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 87/310 (28%), Positives = 153/310 (49%), Gaps = 1/310 (0%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103 + L +++ + + R L ++ L + P + + Sbjct: 1 MTALFMAVGQFLFNHLAQTMLRFLQMDGRLL-TPGNLNALTMRAFGDFFLFMAPVFAVSL 59 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 + G+ +Q + + P F R++ EG K+I S L KS +K+++VG + Sbjct: 60 IAGLAVNYLQVGFLFTTEPLNPQFNRLNPAEGFKKIASKRALFELAKSLLKVLMVGFVAF 119 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + N +L + + + + + I L+VLD + ++ LK Sbjct: 120 LFVRGNLENLLATLYQDAAGVWETLRSLSLNLALRIGALFLVLSVLDYIYQRYEHNQNLK 179 Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSKQEIK+E KQ G+P +K++ + RS +MM+ AT++ITNPT A+A+RY + Sbjct: 180 MSKQEIKEEHKQMEGDPQLKSQLRERQRSIATQRMMQDVPEATVVITNPTELAVAIRYRE 239 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 ++AP +VAKG L+AK++R+ A E+N+PI E +AR L+ QV I IP Y+AVA Sbjct: 240 DRDEAPTVVAKGAALMAKRIRETAKENNVPIMENKPVARMLYDQVEIGQEIPVDLYQAVA 299 Query: 344 QLIYKIYHKK 353 +++ +Y + Sbjct: 300 EILALVYKLR 309 >gi|89898354|ref|YP_515464.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89331726|dbj|BAE81319.1| type III secretory flagellar biosynthesis Yop translocation protein U [Chlamydophila felis Fe/C-56] Length = 360 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A D ++ L + +P L GI + P + KP Sbjct: 62 EAPIN--HDPRVTLYYLQNCLTLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P I Sbjct: 120 KKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNRVPLIIETAGVSPLVIAAI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ IPI LA L+ + IP Y+A+ +++ I Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344 >gi|157738150|ref|YP_001490834.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018] gi|315636293|ref|ZP_07891543.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22] gi|157700004|gb|ABV68164.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018] gi|315479382|gb|EFU70065.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22] Length = 349 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 183/353 (51%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ + KTE P+SKK+EDA NEGN S E S + I+LLFF + + Sbjct: 1 MADD---EEKTEEPTSKKLEDAKNEGNVSKSMEVVGASILTFGSIFLLFFSGSSMLEIKK 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + Q D + + ++ + + P +L ++ G+ Q + Sbjct: 58 LMMLSYNFIGQEM--DGPLYYAITYTVVITLLKALAPLFILVILLGLVGNWAQFGFI--S 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K +++ +G+K I+ + L+ +K +K+ ++ T++ I + Y L ++ Sbjct: 114 IPLKFDLQKLDPIKGLKNIFGLKKLLEALKLSLKLAIIITVMFIIFSLTYNEFLAMMNKE 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + IL I ++D +S + + LKMSKQEIKDE K G+P Sbjct: 174 TMATISSMLQLTIYFIFTILFIIIIFAIMDFYFSKYYYMKSLKMSKQEIKDEYKNMEGDP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + I + +MM A ++ITNPTHYA+AL+Y N APVLVAKG + +A Sbjct: 234 QVKGRIRRIQMQMAQKRMMGNVPNADVVITNPTHYAVALKYDNKVNSAPVLVAKGIDFLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K++ IA E+N+ I E P+LAR+L+ Q+ ++ IP FYKA+A++ +Y K Sbjct: 294 LKIKDIAKENNVTIIENPALARALYDQIEVDKEIPNQFYKAIAEIFSYLYELK 346 >gi|16799762|ref|NP_470030.1| flagellar biosynthesis protein FlhB [Listeria innocua Clip11262] gi|16413139|emb|CAC95919.1| lin0687 [Listeria innocua Clip11262] Length = 348 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIKAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + +L+ ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPKLASMESYSLFYLM-----EFGKVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|313624921|gb|EFR94829.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL J1-023] Length = 348 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + +L+ ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPKLASMESYSLFYLM-----EFGKVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 SQIFALFKNEFLALFLVIAIIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R+ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +A +P+ LARS++ + I YK V +++ Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337 >gi|83814498|ref|YP_446683.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855] gi|294508619|ref|YP_003572678.1| flagellar biosynthetic protein flhB [Salinibacter ruber M8] gi|83755892|gb|ABC44005.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855] gi|294344948|emb|CBH25726.1| Flagellar biosynthetic protein flhB [Salinibacter ruber M8] Length = 353 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 176/354 (49%), Gaps = 5/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE K P+ +++E A +GN + E +L + + S+ Sbjct: 1 MSE---TQEKQYDPTPRRLEKAREKGNVLRATEPVSVGLLLTAMAVFSVGGASAFQSLQD 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + L + + L+ + + ++ P ++ ++ +G ++Q ++ Sbjct: 58 MAARIFLRSARMSL-TPASLQRLVAEIGAQVAGMLAPLFIVLIVAAVGLNMVQSGWNVSF 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P RV+ EG+K+I+S F K+ +KI +VG I ++ M+ + Sbjct: 117 TPIQPQLSRVNPLEGLKQIFSSKGAFGFAKTLLKIGVVGPIAYFAMRPLIPEMVQVYTLP 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L A ++ +L+ + + LD + ++Y LKMSK+E++DE K++ G+P Sbjct: 177 LPALLNQAADWFFALMWRVLMGLVVIAALDYAFERWKYYEDLKMSKKEMEDEQKETEGDP 236 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 + +++ A+ +M A ++ ++TNPTHYA+ALRY E AP ++ KG Sbjct: 237 EFEEKRREKAKELAEQPRMDHAVMKSDAVVTNPTHYAIALRYDPDEAPAPRVLLKGVRKR 296 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +++++A E ++P FE SLA +L++ VP IP Y AVA ++ ++Y ++ Sbjct: 297 ALRIKELAAEFDVPTFENRSLAHALYENVPEEEEIPEELYPAVAAILAEVYEQR 350 >gi|134280655|ref|ZP_01767365.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305] gi|167725903|ref|ZP_02409139.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei DM98] gi|254299711|ref|ZP_04967160.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] gi|134247677|gb|EBA47761.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305] gi|157809492|gb|EDO86662.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 406e] Length = 379 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 79/353 (22%), Positives = 159/353 (45%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ D+ D K+E + +K+ +A +G SR+ S +L L L+ + + Sbjct: 1 MANQDSGD-KSEKATPQKLRNARRQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L T +++ + +S++ +I + + + L+ +L+ Sbjct: 60 LFLLELVDVTGDG--ALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPGGWILSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F R++ + R+ S + F S +K + + ++ L Sbjct: 118 AQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L F + + + + D+ + + +M+KQE+KDE K + G P Sbjct: 178 LQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 298 LAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|325527806|gb|EGD05073.1| flagellar biosynthesis protein FlhB [Burkholderia sp. TJI49] Length = 308 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 143/263 (54%) Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 ++P L L + + + + +++ + F R++ G+ RI+SI + Sbjct: 1 GFAALLPILALTGLAALLAPMALGGWLISQKTFELKFDRLNPISGLGRIFSIQGPIQLGM 60 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S K ++VG I I++ + +L + + L A V + + + LD Sbjct: 61 SIAKTLVVGGIGGIAIWRSKDELLGLATQPLDAALVDALHLVAVCCGTTVAGMLVVAGLD 120 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 + + Q+ KL+M+K+E+K E +++ G+P +K R + R+ R +MM A +A +++T Sbjct: 121 VPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVT 180 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NPTH+A+AL+Y E AP +VAKG NL+A ++R++A EHN+P+ E P LAR+L+ V + Sbjct: 181 NPTHFAVALQYTDGEMRAPKVVAKGVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEL 240 Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353 IP Y AVA+++ +Y K Sbjct: 241 EREIPGSLYAAVAEVLAWVYQLK 263 >gi|283836566|ref|ZP_06356307.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC 29220] gi|291067495|gb|EFE05604.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC 29220] Length = 347 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 154/340 (45%), Gaps = 3/340 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KT+AP+SKKI DA EG + E + + L+YL + ++ L + Sbjct: 2 SGEKTQAPTSKKIRDAREEGQVAKTAELAAGVQLAVILMYLYLWGDDIWQDLSDLLLFTI 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + + + + + +YL Q + + + P Sbjct: 62 DKMNDPLPIAFAGFISMFGKFVFEDLIFL---FAVLFFASMSAYLAQIGFLFSGKAMMPK 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ + + +K I+S+ +LV +K+ VK+ ++G++ ++ + + P + Sbjct: 119 LDKLDVVKNLKNIFSVKSLVELLKNLVKMTIIGSVFYYLFCRYIPSLRNMVYIEPADAMQ 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + ++L ++ D + ++ L+MS +E+K E K+ G+ +K+ + Sbjct: 179 VTLKIIFWLWGGLVLCYIVFSLADYAYQRYELMKNLRMSHEEVKQEYKEMEGSAEVKSHR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 KS+ + + +++ +I NPTH A+ + Y + PV+ AKG +LIA+ + I Sbjct: 239 KSLHQEIQSGSLANTVKKSSAVIRNPTHLAICIYYDENITPLPVITAKGADLIARYIVDI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A + +P+ E LAR L K++ I P F+ A+++++ Sbjct: 299 AEKAGVPVIENVPLARGLNKEIKTGDYISPPFFSAISEIL 338 >gi|332526006|ref|ZP_08402146.1| Translocation protein in type III secretion [Rubrivivax benzoatilyticus JA2] gi|332109851|gb|EGJ10479.1| Translocation protein in type III secretion [Rubrivivax benzoatilyticus JA2] Length = 387 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 165/350 (47%), Gaps = 5/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + +KTE P+ KK++DA +G SR+ S +LA L ++ + + + Sbjct: 1 MADKNDGGDKTEKPTPKKLQDARRKGQVSKSRDLSSTVPLLAWLAVVVLGSAYAGRELGA 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LAS + + L +L S L LL G+ +Q PV + Sbjct: 61 LADAALASIGRPFEVAAPALGELAWRTTLWLSAL---ALLPAAALGVLVEFLQAGPVFSA 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP + ++ EGIKR++ ++NLV KS K +L+ I + L + A Sbjct: 118 ERLKPKAEHLNPVEGIKRMFGLDNLVELAKSLAKCVLLLAIGALVLRGVLADSARLLQAP 177 Query: 181 PH--SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 ++ R+ L L+ + LD+ W H + KL+MS ++IK E K+S G Sbjct: 178 AGVGAVGTLLLEVTRQALTWTLVAFVLVAALDMAWQRHSFTKKLRMSLRDIKQETKESEG 237 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P ++ +++ + + +A +A +++ NPTH A+A+ Y + P + AKG++ Sbjct: 238 DPQVRQQRRQAHQEWSQRNAQQAARQANVLVVNPTHVAIAIDYDRDTCPVPTISAKGEDH 297 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +A+ MR+ A E +PI LAR L + + +P + VA++I Sbjct: 298 VARAMREAAEEAGVPIVRNVPLARDLLGRGEVGQLVPADLFDVVAEVILW 347 >gi|94986993|ref|YP_594926.1| translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] gi|94731242|emb|CAJ54605.1| translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 360 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 168/347 (48%), Gaps = 3/347 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 +KTE P+ KK+ +A +G+ S++ + ++ +Y + + ++ + L L Sbjct: 4 DSGDKTEPPTPKKLREAREQGDVAKSQDVAAAMTMFGASLYFIGMWQDVFSNLLN-LIEL 62 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 E+ + ++ ++ A ++IP + M + + L+Q + ++ P Sbjct: 63 PTKFIHLPFEE--ALPATISGIASIAFSILIPIIATLMFLAVAADLMQIGVLFSVKSAIP 120 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 ++ ++ +++SI NL F+K+ +K+ ++ + I L+ + S N S+ Sbjct: 121 KLDNLNPKKWFSKVFSIKNLGEFVKNILKVSVLTITVWIILSNYIKELFAIASGNIWSLW 180 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 Y +R + + + + + + +D + Q+ + MSKQEIK E K G+P+IK + Sbjct: 181 YILGSVLRDLTLSVSMVFSVIACIDFMFQKWQYNKRQMMSKQEIKQEYKDMEGDPLIKGK 240 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K + + + +A +++ NP HYA+A+ Y + PV++AKG+ L+A++M Sbjct: 241 RKQLHQEMAMQNPVNKVRKAKVVVVNPIHYAIAIDYEKGRTLLPVILAKGEGLLAQRMVA 300 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +A E IP+ + LA SLF +S IP VA+++ + Sbjct: 301 VAQEEGIPVMQNIPLAHSLFMDGIEDSYIPRNLIAPVAEVLRWVNSL 347 >gi|310816836|ref|YP_003964800.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare Y25] gi|308755571|gb|ADO43500.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare Y25] Length = 360 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 169/340 (49%), Gaps = 1/340 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE A +K+ P+ KK+EDA +G+ P S + ++ ++ + L + + + Sbjct: 1 MSEEAAGADKSHDPTPKKLEDARKKGDHPKSADLTIAAAYGGYYLGLTALGAGLALAAVN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLN 119 L LL A + S ++ LS + L V+P + + M + S QR V Sbjct: 61 QLGGLLYHADGLATDAFSAPAHVVLRPLLSITSLAVLPLITVPAMLALLSLFAQRALVFA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + P R+S K+ + + ++ F+KS K++L + L+ N+ + + Sbjct: 121 PSKLVPKLSRISPLAVAKQKFGLAGIIEFLKSAAKLLLYTGALAWFLSTNFDEIAATPAM 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 S+L + +L++ L+ L VLD W + +MS+QE+ DE+K+S G+ Sbjct: 181 PARSVLVFMGQMLAAMLLIALVISLVLGVLDAVWQQIRHLRDNRMSRQEVMDEMKESEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P + +++ + +++ +A++II NPTHYA+AL++ APV +AKG + + Sbjct: 241 PHTRQQRRQRGIAIAMNQVAAEVPKASVIIVNPTHYAVALQWQPDSRRAPVCLAKGIDEV 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 A +MR+IA EH +PI +P AR+L+ Q + I Y Sbjct: 301 ALRMRQIAQEHGVPIQSDPLTARALYAQTEVGQEISRQHY 340 >gi|257457600|ref|ZP_05622767.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] gi|257444986|gb|EEV20062.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] Length = 383 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 173/351 (49%), Gaps = 8/351 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ KI A EG S++ + +L L+F S + L Sbjct: 27 EDEGRTEDPTDYKIRKAREEGRVAKSQDINAALVLLFPAGALIFLSSFFLEECMEILRFF 86 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124 +TQ + +L +P L+ M+ G+ + ++Q + + ++ Sbjct: 87 FLRSTQSDINS----GIWFGIFVQYFLKLALPLALIAMLAGVIANILQNNGFLFSTKPIQ 142 Query: 125 PSFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P F ++ + KR ++S L NF KS K++++ + + + N ++ +S + Sbjct: 143 PQFNKIVPNFMRFFKRALFSAEGLFNFAKSLTKVVVLVFVSFLMIRANLPHFIELLSVSF 202 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 ++ K+L L + L + D + Q+ LKM+KQEIK+E K+ G+P Sbjct: 203 PQAVFFIAGLGAKLLATAALLLLILAIPDYFFQRKQFIDSLKMTKQEIKEEYKELEGDPQ 262 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K R + ++ + + +A ++ITNPTH+A+A+++ AP+++AKG + +A+ Sbjct: 263 VKGRIRQQMQAILSQNAIRNVPKADVVITNPTHFAIAMQWDSKTMAAPMVLAKGADAMAQ 322 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +++ IA EHNIP+ E LAR+L+ +V I IP +Y+A++ + ++Y Sbjct: 323 RIKAIAREHNIPLIENKPLARALYAKVQIGDIIPEEYYRALSLVFAEVYTL 373 >gi|167905062|ref|ZP_02492267.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC 13177] Length = 379 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 2/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 N +K+E + +K+ +A +G SR+ S +L L L+ + + Sbjct: 3 NQDSGDKSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRALFL 62 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + L T + V L ++L +++ P ++ + +GS L+ +L+ + Sbjct: 63 LELVDVTGDGALANAWSVALPVSIAL-FLKMIAPFFVVPLCVVLGS-LLPGGWILSGAQL 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP F R++ + R+ S + F S +K + + ++ L Sbjct: 121 KPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLPLQE 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L F + + + + D+ + + +M+KQE+KDE K + G P ++ Sbjct: 181 ALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRPEVR 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +R + + R + + + A +++ NPTHYA+AL+Y +AP ++AKG + +A + Sbjct: 241 SRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMALAI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R+IA EH + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 301 RRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350 >gi|166154312|ref|YP_001654430.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|166155187|ref|YP_001653442.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335563|ref|ZP_07223807.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930300|emb|CAP03786.1| type III secretion system inner membrane protein [Chlamydia trachomatis 434/Bu] gi|165931175|emb|CAP06740.1| type III secretion system inner membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 360 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAEHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +A Q D ++ L + + + +P L G+ + P + KP Sbjct: 62 TAPQN--HDPHLAIYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + + +K+ + + + +KS KI I+ I L +++ P Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I LF + V+D+ + H + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKEILYKAVTSIGLFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ +PI LA L + IP Y+AV +++ I Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344 >gi|29840222|ref|NP_829328.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29834570|gb|AAP05206.1| type III secretion protein, hrpY/hrcU family [Chlamydophila caviae GPIC] Length = 360 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A D ++ L + + +P L GI + P + KP Sbjct: 62 QAPIN--HDPKVTLYYLQNCLVLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + + +K+ + + L+ +KS +KI I+ ++L +++ +P I Sbjct: 120 KKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIAVI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIVEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ +PI LA L+ + IP Y+A+ +++ I Sbjct: 300 EKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344 >gi|2444073|gb|AAB71508.1| cytoplasmic membrane component required for type III (contact-dependent) secretion [Chlamydophila caviae] Length = 360 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A D ++ L + + +P L GI + P + KP Sbjct: 62 QAPIN--HDPKVTLYYLQNCLVLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + + +K+ + + L+ +KS +KI I+ ++L +++ +P I Sbjct: 120 KKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIGVI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + VLD+ + + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIVEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ +PI LA L+ + IP Y+A+ +++ I Sbjct: 300 EKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344 >gi|15834985|ref|NP_296744.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270285154|ref|ZP_06194548.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270289175|ref|ZP_06195477.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|301336549|ref|ZP_07224751.1| type III secretion system protein [Chlamydia muridarum MopnTet14] gi|7190408|gb|AAF39227.1| type III secretion inner membrane protein SctU [Chlamydia muridarum Nigg] Length = 360 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + S + L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIFR 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +A Q+ D V+ L + + + +P L G+ + P + KP Sbjct: 62 TAPQQ--HDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + E +K+ + + + +KS KI I+ I L +++ P Sbjct: 120 KKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + V+D+ + H + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL A+++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ +PI LA L + IP Y+AV +++ I Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344 >gi|255264526|ref|ZP_05343868.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62] gi|255106861|gb|EET49535.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62] Length = 374 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 167/349 (47%), Gaps = 3/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D K ++KK+EDA +G P S + + +S LI + F S I + Sbjct: 15 MAEDDT--EKPHEATAKKLEDARKKGEFPKSVDLTTSASYAGMLIVMAVFGSFSIERFGA 72 Query: 61 DLHVLLASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + L++ + ++ + L + + P + + + + + QR V Sbjct: 73 LMVQLISEPVALAHVAFLAPGGAQAKWVILGLATQLAPWFTVPALCALVALVTQRAIVFA 132 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P R+SL K + + L F+KSF K+ + I+++ L+ +L ++ Sbjct: 133 PTKLAPKISRISLLSNAKNKFGRSGLFEFLKSFSKLTIYSIILSVFLSIKLPIILSSMTT 192 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P I + ++L ++L+ + +D W + + K MS QEIKDE K + G+ Sbjct: 193 QPRLISAQLATLIVELLSLVLVVSIIIGGVDYLWQHAEHLRKNMMSDQEIKDEHKNNEGD 252 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++ ++M+ A A ++I NPTH+A+AL++ ++ P +AKG + I Sbjct: 253 PGMKQERRQRGYDIAMNQMLGAVEEADVVIVNPTHFAVALKWDRSRGSVPKCLAKGVDEI 312 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A ++R+ A E IPI +P AR+L+ V I I P YKAVA I Sbjct: 313 AARIRERAAEEAIPIHSDPPTARALYATVEIGQEIRPDHYKAVAAAIRF 361 >gi|76788804|ref|YP_327890.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|237802523|ref|YP_002887717.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237804440|ref|YP_002888594.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255310893|ref|ZP_05353463.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317193|ref|ZP_05358439.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|255348453|ref|ZP_05380460.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255502995|ref|ZP_05381385.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|76167334|gb|AAX50342.1| SctU [Chlamydia trachomatis A/HAR-13] gi|231272740|emb|CAX09644.1| type III secretion system inner membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273757|emb|CAX10538.1| type III secretion system inner membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|289525135|emb|CBJ14607.1| type III secretion system inner membrane protein [Chlamydia trachomatis Sweden2] gi|296434679|gb|ADH16857.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296435608|gb|ADH17782.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296436531|gb|ADH18701.1| type III secretion system protein [Chlamydia trachomatis G/11222] gi|296437468|gb|ADH19629.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|296438396|gb|ADH20549.1| type III secretion system protein [Chlamydia trachomatis E/11023] gi|297139967|gb|ADH96725.1| type III secretion system protein [Chlamydia trachomatis G/9301] Length = 360 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAEHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +A Q D V+ L + + + +P L G+ + P + KP Sbjct: 62 TAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + + +K+ + + + +KS KI I+ I L +++ P Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGIPPLVTAQV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + V+D+ + H + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ +PI LA L + IP Y+AV +++ I Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344 >gi|261209856|ref|ZP_05924157.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341] gi|262404466|ref|ZP_06081021.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586] gi|260841042|gb|EEX67567.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341] gi|262349498|gb|EEY98636.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586] Length = 330 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 151/305 (49%) Query: 49 FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108 +F + L S ++ ++ D+ + ++ ++ ++ L+ + Sbjct: 1 MWFGEALAQGLFTAMQRLFSLSREEIFDVGKLFDIIGGALVNLLLPLLMILITLFTAALI 60 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 + P +++ G KR++ + + V +KS +K++LV + + Sbjct: 61 GAAGIGGINFSAEAAMPKLSKMNPLSGFKRMFGMQSWVELLKSILKVMLVAGVAFYLIEA 120 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + + ++HA + +++I + + +DI + Q ++LKM+KQE Sbjct: 121 SQKDLFQLSLDVYPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQE 180 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 181 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 240 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 241 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 300 Query: 349 IYHKK 353 ++ K Sbjct: 301 VFQLK 305 >gi|167567948|ref|ZP_02360864.1| type III secretion system protein [Burkholderia oklahomensis EO147] gi|167573178|ref|ZP_02366052.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 352 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S +S+ A +++L+ P ++ S + L Sbjct: 2 SDEKTEEPTEKKLRDARKDGQVSRSADFSDAASMTAAVLFLVAAADPLDDAMRSLVDCAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + ++ + L L A ++P L + GIG ++Q +++ V P+ Sbjct: 62 TFVSGD--HSLAEMTTRLYKLGGIALWAIVPYLCAAALAGIGGSILQVGLQVSMKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +S +G+KRI+S ++ +K VK V ++ ++ + + + + Sbjct: 120 IGALSPADGLKRIFSPRTVIESVKMLVKAAAVFCVMWKTVEWLFPLIAGALYQPLPELSQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ + K+L++ A + D+ + + +++MSK E+K E K G+P++K + Sbjct: 180 ISWEILTKLLMVAAGLFALVGAADMKLQHFMFMKQMRMSKDEVKREAKNDEGDPLLKGER 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + IAR +RA ++ NPTHYA+A+RY E+ P ++AKG + A +R+ Sbjct: 240 RRIARELAAAPPQRQVARANFVVVNPTHYAVAVRYASDEHPLPRVIAKGTDETAAALRRA 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A N+PI P +AR+LF +V + IP ++ +A ++ + Sbjct: 300 AQNANVPIVGNPPVARALF-EVGVEEPIPEELFEIIAAILRWV 341 >gi|283850714|ref|ZP_06368001.1| type III secretion exporter [Desulfovibrio sp. FW1012B] gi|283573957|gb|EFC21930.1| type III secretion exporter [Desulfovibrio sp. FW1012B] Length = 357 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 6/355 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ + + KTE + K+ + A +G+ P S+E + +LA L L ++ Sbjct: 1 MARDPS---KTEKATQKRRDKAREKGSVPRSQELPKLTVLLAGLFTLRLLIDDLGDALRE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + L+ LS + +++P LL+ + G + Q V Sbjct: 58 VFTTFLGQRLAFE-ATPDGVNALMWLLSQKLAVMLLPLLLVMAVVGYVTQRWQVGEVWYS 116 Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 P F + + I+++ + LV K +G + L + Sbjct: 117 RLFNPDFSNLFNPVAAIQKLLINPKTLVQLGKQVAMAAAIGLAPYLILKNKFDEFFPLFY 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + +++ L+ + + VLD+ ++ + LKM+K EIKDE KQ+ G Sbjct: 177 QTTENFAAFLLGNGFILVLYTLVPMVIIAVLDVWYTRWDYEENLKMTKDEIKDETKQAIG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK +QK ++ +M++ +A ++ITNPTH+A ALRY E+ AP+L+AKG + Sbjct: 237 DPAIKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHFACALRYNPKESPAPLLLAKGADH 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A+K+++IA EH IPI E LA++L+K V I IP Y+AVA ++ ++ K Sbjct: 297 LAEKIKEIAREHRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQLDKFK 351 >gi|15604810|ref|NP_219594.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|255506666|ref|ZP_05382305.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|3328487|gb|AAC67682.1| Yop proteins translocation protein U [Chlamydia trachomatis D/UW-3/CX] gi|297748220|gb|ADI50766.1| SctU [Chlamydia trachomatis D-EC] gi|297749100|gb|ADI51778.1| SctU [Chlamydia trachomatis D-LC] Length = 360 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAKHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +A Q D V+ L + + + +P L G+ + P + KP Sbjct: 62 TAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + + +K+ + + + +KS KI I+ I L +++ P Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGIPPLVTAQV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + V+D+ + H + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ +PI LA L + IP Y+AV +++ I Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344 >gi|323143905|ref|ZP_08078567.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei YIT 12066] gi|322416332|gb|EFY07004.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei YIT 12066] Length = 348 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 171/347 (49%), Gaps = 2/347 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ K++ DA +G+ S+E ++++A + + + + S + Sbjct: 2 SGEKTEQPTDKRLRDAREQGDIAKSQEVVSAATVIAVVFFFIANADNIFKKLLSTTDYVF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 +++ ++ ++ + + +V+P + + + + L Q + P Sbjct: 62 SNSITMPYDEALRLIG--AAVIDCSIGIVLPIVAAVLCAALVALLSQTGFLFAPKGAIPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + +S + K+++S+ NL+ F+K+ +K+ ++ + ++ ++ ++N S+ Sbjct: 120 LENLSPAKWFKQVFSVKNLIEFIKNIIKVTVLSVAVYMAAKNSFREFFKIQNSNIGSVWE 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++ + I ++ + L +D ++ ++ MS E+K E K+ G+P IK+++ Sbjct: 180 LSAVLLKDLAIYAIVAFSILAAIDFVYTKFKYTKDHMMSPDEVKQEYKEMEGDPQIKSKR 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + + T +A ++ITNPTHYA+A+ Y + PV++AKGQ +A++M I Sbjct: 240 RQLHQEMANQSTLANTRKAKVLITNPTHYAVAIDYEEGRTKLPVILAKGQGDLARRMIAI 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A E +IPI +P LAR+LF + +P VA+++ I + Sbjct: 300 AKEEHIPIMRQPPLARALFAEGSEEQYVPSDLLVQVAEVLRFIDKMR 346 >gi|282891999|ref|ZP_06300476.1| type III secretion inner membrane protein SctU [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498041|gb|EFB40383.1| type III secretion inner membrane protein SctU [Parachlamydia acanthamoebae str. Hall's coccus] Length = 356 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 159/343 (46%), Gaps = 3/343 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK+ DA N+G S++ + + + L + S + Sbjct: 2 GEKTEKATPKKLRDARNKGQVAKSQDLPSAFTFIVSIWVTLAASKFLFDHLGSFTVMTFH 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + L+ + I L IP L + + G+ + P+ L K Sbjct: 62 QIAKGSLD--TAIPDLYIQGLTEIFITSIPILGMVSVIGVLINFLVVGPMFALEVFKFDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ +K + + LV +KS +KI + I+ + ++ ++ +S + L Sbjct: 120 KKFDPISNLKSKFKLKTLVELLKSVLKISIACYIVYDVMWKSLPVLIRAVSLPIDASLMV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + +V+I + LF + V D + + S++KM K E+K E K S G+P IK+++K Sbjct: 180 FYAFLMEVVIKVGLFFIIIAVADFIYQKKTFASEMKMEKFEVKQEYKNSEGDPQIKSKRK 239 Query: 248 SIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 IA+ + RA ++TNPTH A+A+ Y + + AP ++AKG++ +A+++ K Sbjct: 240 QIAQEIAYQEGPRGGVKRAQAVVTNPTHLAIAIGYKKDYDAAPFVLAKGEDALAERIIKY 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E N+P+ LA L+++ + +P Y+ +A+++ I Sbjct: 300 AEEFNVPVVRNIKLAHKLWEEADVYEFVPEDTYELIAEILRWI 342 >gi|15596887|ref|NP_250381.1| translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] gi|107101122|ref|ZP_01365040.1| hypothetical protein PaerPA_01002154 [Pseudomonas aeruginosa PACS2] gi|218892354|ref|YP_002441221.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] gi|254234789|ref|ZP_04928112.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|254240035|ref|ZP_04933357.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|9947663|gb|AAG05079.1|AE004596_5 translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] gi|126166720|gb|EAZ52231.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|126193413|gb|EAZ57476.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|218772580|emb|CAW28363.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] Length = 349 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 178/346 (51%), Gaps = 9/346 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDLH 63 KTE P++KK+ DA +G S+E + IL+ + L+ F + + + Sbjct: 2 SAEKTEQPTAKKLRDARRQGQVVKSKEIVSSALILSLVALLMGFSDYYLEHLGKLLLLPA 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + ++ LE I + L+ L + + + S++ Q +L+L+ V Sbjct: 62 EYIDLPFRQALETILENLLQELLYLLAPVLL------VAALVVVLSHVGQYGFLLSLDSV 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP K+++ EG K+I+SI +LV F+KS +K+ L+ ++ ++L N ++L + Sbjct: 116 KPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLDC 175 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + +R+++++ + + V D + HQ Y +L+MSK E+K E K+ G+P IK Sbjct: 176 VAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEIK 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++++ + + R+++I+ NPTH A+ +RY + E P++ K + +A ++ Sbjct: 236 SKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLVTLKHTDALALRV 295 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 R+IA E IP+ + LAR+L + ++ IP +A A+++ + Sbjct: 296 RRIAEEEGIPVLQRIPLARALLRDGNVDQYIPADLIQATAEVLRWL 341 >gi|269796379|ref|YP_003315834.1| flagellar biosynthesis protein FlhB [Sanguibacter keddieii DSM 10542] gi|269098564|gb|ACZ23000.1| flagellar biosynthesis pathway, component FlhB [Sanguibacter keddieii DSM 10542] Length = 422 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 164/353 (46%), Gaps = 4/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS KTE + K+++ +G S++ S + I A + L G + Sbjct: 1 MSGGGDSGEKTEQATPKRMKQNRKDGALQRSQDLSAWLGIGAAAVMLPVALGRGAEAAVD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + D +V LL S + P L++ ++ + + Q + Sbjct: 61 QLSAVREIISN---PDPLVVVDLLGTGMDSILTSLTPLLVVVVLAAVVGNVSQGGLHVAT 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP F +L +GIK + L +K+ K ++VG ++ I++ +L + Sbjct: 118 KKLKPKFDHFNLVKGIKNTFGGQALWQGVKALAKTLVVGLVLYIAIQNLMPVLLTAGGLS 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L A ++ +L + L +LD+ + K +MSK E+K E KQS G+P Sbjct: 178 VGALLSAAGGGIQALLWSAVAAGIALAILDLVVVMKRNRKKTRMSKYEVKQENKQSEGDP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K +S + R++M+ + A +++ NPTH A+AL+Y AP +VAKG +A Sbjct: 238 QLKGAIRSKQIAMSRNRMIASVGDADVVLVNPTHVAVALKYEAG-TGAPRVVAKGAGHVA 296 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R++A E ++P+ + LAR+L I IP Y AVAQ++ + K Sbjct: 297 ARIREVAAEKSVPMISDVPLARALHGACEIGEEIPADLYAAVAQVLAFVMALK 349 >gi|238918897|ref|YP_002932411.1| secretion system apparatus protein SsaU [Edwardsiella ictaluri 93-146] gi|48256991|gb|AAT41686.1| type three secretion apparatus protein U [Edwardsiella ictaluri] gi|84663105|gb|ABC60087.1| EsaU [Edwardsiella ictaluri 93-146] gi|238868465|gb|ACR68176.1| EsaU [Edwardsiella ictaluri 93-146] Length = 351 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 155/338 (45%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K++ DA EG S++ + L++++ ++ + LA+ Sbjct: 3 EKTEQPTDKRLRDAREEGQVAKSQDIGATVQLAVILLWMVTEGPRMYAAIGGFIDATLAT 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L + + L + R V +L ++ I + L++ + + PS + Sbjct: 63 V---NLPLLDAMTLLTGEAATLMIRFVFGLAMLLIVTLILTGLVETGFLFAPKAIMPSAE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R+S K++ S+ L K +KI+++G T + + + A+ + L+ Sbjct: 120 RISPLSNAKQMVSLLKLFELGKMILKIVILGLTFTYFIRSYAESFAQLVRADAEAGLWVT 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + ++LL A V+D Y +L MS+++IK E K S G+P IK R++ Sbjct: 180 SKMILWLWGILLLLTALFAVVDYSMQYRHLRKQLMMSREDIKQEFKNSEGSPEIKQRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R + ++ + A++++ NPTH A+ LRY + E P +V G+ A+ + +A Sbjct: 240 LHREIQSGSLADSVASASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARAQHIVTLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IP+ E LAR+L +P + AVAQL+ Sbjct: 300 ALRIPVVENIPLARALIATTRPGDYVPEELFAAVAQLL 337 >gi|91200239|emb|CAJ73283.1| similar to flagellar biosynthetic protein FlhB [Candidatus Kuenenia stuttgartiensis] Length = 349 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 188/353 (53%), Gaps = 5/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ K+I + +G+ S + S +IL + LL+ +Y+ Sbjct: 1 MADT----EKTEQPTGKRISEVRQKGSVAQSPDLSSAIAILVGFL-LLYALGNIMYAGMK 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ V +K IV + + ++++++P L ++ G+ +Q + L Sbjct: 56 EITVFTLQNLSQKDITPDIIVEKIIYYIYVSAKILLPILGGLLIVGLIVSYMQTGLLFTL 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP ++++ G+K+++++ + V + S VK++L+G I + + + + + I Sbjct: 116 KPLKPDLTKLNVISGVKKLFNVQSFVKLLFSVVKLLLIGGIGILYIKKELAKLDNLIDIG 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ + + + L ++D + Q+ +KMSK+E+KDE KQ+ G+P Sbjct: 176 IAQFFILTTKLTFGLVMRVSIALVILAMVDYIYQKWQYKRGMKMSKKEVKDERKQAEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK++ +S +M A +A +++TNPTHYA+AL+Y + AP +VAKG + IA Sbjct: 236 VIKSKIRSAQIQMALKRMASAIPKADVVVTNPTHYAVALKYDRKSMHAPKVVAKGADYIA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA + IPI EE SLAR+L+K V + IP Y AVA+++ +Y K Sbjct: 296 LKIKEIAKINKIPIVEERSLARTLYKTVDVGKEIPQKLYYAVAKVLSYVYGLK 348 >gi|121607921|ref|YP_995728.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2] gi|121552561|gb|ABM56710.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2] Length = 387 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 155/348 (44%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + K+ S +K++ A +G SRE + + A + + + L Sbjct: 3 SSQEKSLPASGRKLQKARADGQGARSRELLHLAILGAGSAGMWLLAPQWLDRMQLALSRQ 62 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 LA ++ L + L +L + + L +L+ ++P Sbjct: 63 LAFDAAAIAA-PGTMLDRLRDMVLPGLVAGTGFAVLTGVAALVGALGAGGWILSTRPIQP 121 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F R+ G+ ++S + N +K + ++G + L + T+ + L Sbjct: 122 RFSRLDPVAGLTHLFSRQQMANVLKMVLMTGVLGVVAWQFLAGSMATVAMLVLQPSPRAL 181 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + L +LL + ++D+ + ++L+MS QE++ E ++S GNP K R Sbjct: 182 GLLVDWLGAGLGWLLLVLLLAALVDVPMQAWFFKARLRMSHQEVRQEHQESDGNPHTKGR 241 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + R + A RA ++ NP HYA+ALRY + AP ++A+G +L+A ++R Sbjct: 242 IRQRQRDLAERASVGAVPRADFVVMNPAHYAVALRYDEKTMGAPQVIARGTDLLAFRIRD 301 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +A EH +P+ + P LAR+L+ ++ AIP Y AVAQ++ +Y K Sbjct: 302 LAREHGVPVLQSPRLARALYAHAALDQAIPAPLYAAVAQVLAHVYRLK 349 >gi|221639480|ref|YP_002525742.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131] gi|221160261|gb|ACM01241.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131] Length = 382 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 94/360 (26%), Positives = 169/360 (46%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P+ K+ E A +G+ S+E +F++ LA + LL + ++ Sbjct: 3 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 61 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117 L LE I+ + L + ++I GL++ + L+Q Sbjct: 62 GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 117 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S Sbjct: 177 TAAPGDAATVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 236 Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++ Sbjct: 237 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 296 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ +A + + + I P LAR+L+ I IP Y AVA ++ +Y Sbjct: 297 AMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 356 >gi|254511494|ref|ZP_05123561.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium KLH11] gi|221535205|gb|EEE38193.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium KLH11] Length = 362 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 1/337 (0%) Query: 13 APSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQR 72 + +K+E A +G S + S+ ++ I LL ++ + VL+ + Q Sbjct: 13 EATPQKLEKARKKGEVAKSNDLSVVAAYAGLFIALLTAGQYTAQNLGTLFVVLIDQSDQI 72 Query: 73 K-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131 L V + + +A V ++ + S + QR V + +KP R+S Sbjct: 73 ATLLTQGPAVVPVAGMLKAAMVPVSALFIVPAAAVLLSLIAQRALVFAPSKLKPRASRIS 132 Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191 + K + L F KSFVK+++ GT + + L + +L +A S + Sbjct: 133 IPSNAKNKFGRGGLFEFAKSFVKLLIYGTCLALFLQAHLPEILTASAAPARSSILLMMTL 192 Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 + + L +++ + ++D W + + K +MS++E++DE K S G+P +K +++ A+ Sbjct: 193 LTRFLFIVITIALAIGIVDYLWQHAEHMRKNRMSRKEVQDETKDSEGDPHVKQQRRQRAQ 252 Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311 ++MM +A ++I NPTHYA+AL++ + APV VAKG + +A +R A + Sbjct: 253 EIAANQMMADVPKADVVIVNPTHYAVALKWSREAGSAPVCVAKGVDEVAATIRATADDAG 312 Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +PI +P AR+L V I + +Y+ VA I Sbjct: 313 VPIHSDPPTARALHATVEIGQEVTEEYYRPVAAAIRF 349 >gi|332558493|ref|ZP_08412815.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N] gi|332276205|gb|EGJ21520.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N] Length = 380 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 93/360 (25%), Positives = 169/360 (46%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P+ K+ E A +G+ S+E +F++ LA + LL + ++ Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117 L LE I+ + L + ++I GL++ + L+Q Sbjct: 60 GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234 Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++ Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y Sbjct: 295 AMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354 >gi|77463637|ref|YP_353141.1| flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1] gi|77388055|gb|ABA79240.1| Flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1] Length = 380 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 94/360 (26%), Positives = 169/360 (46%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P+ K+ E A +G+ S+E +F++ LA + LL + ++ Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117 L LE I+ + L + ++I GL++ + L+Q Sbjct: 60 GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234 Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++ Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ +A + + + I P LAR+L+ I IP Y AVA ++ +Y Sbjct: 295 AMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354 >gi|116049640|ref|YP_791555.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] gi|296389926|ref|ZP_06879401.1| translocation protein in type III secretion [Pseudomonas aeruginosa PAb1] gi|313110376|ref|ZP_07796265.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] gi|115584861|gb|ABJ10876.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] gi|310882767|gb|EFQ41361.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] Length = 349 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 178/346 (51%), Gaps = 9/346 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDLH 63 KTE P++KK+ DA +G S+E + IL+ + L+ F + + + Sbjct: 2 SAEKTEQPTAKKLRDARRQGQVVKSKEIVSSALILSLVALLMGFSDYYLEHLGKLLLLPA 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + ++ LE I + L+ L + + + S++ Q +L+L+ V Sbjct: 62 EYIDLPFRQALETILENLLQELLYLLAPVLL------VAALVVVLSHVGQYGFLLSLDSV 115 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 KP K+++ EG K+I+SI +LV F+KS +K+ L+ ++ ++L N ++L + Sbjct: 116 KPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLDC 175 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 + + +R+++++ + + V D + HQ Y +L+MSK E+K E K+ G+P IK Sbjct: 176 VAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEIK 235 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++++ + + R+++I+ NPTH A+ +RY + E P++ K + +A ++ Sbjct: 236 SKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLITLKHTDALALRV 295 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 R+IA E IP+ + LAR+L + ++ IP +A A+++ + Sbjct: 296 RRIAEEEGIPVLQRVPLARALLRDGNVDQYIPADLIQATAEVLRWL 341 >gi|238899254|ref|YP_002924937.1| type III secretion system apparatus protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467015|gb|ACQ68789.1| type III secretion system apparatus protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 352 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 160/346 (46%), Gaps = 5/346 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K+I+++ +G S E + + + LIY ++ + + +L+ S Sbjct: 3 EKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYFSLVGP----NLVNLMGLLITS 58 Query: 69 ATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + ++ + I ++ L + ++ +++ + I + Q P+L + + Sbjct: 59 SIKKLDKPIGIAVLDLTSEIASVFLQIMGVLGGGLALATILVVMSQVGPLLAIKAIGFKG 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + ++ K + S+ +L KS K+ILV I L E T H Sbjct: 119 QHINPISNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLREYAPTFGYLSYCGTHCAFPI 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 ++ +L +L +LD + ++ K+KMS++EIK E K + G+P IK++++ Sbjct: 179 FGTLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDGDPEIKSKRR 238 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + + + +T +I NPTH+A+ L Y E P+++ KG+ A+ + K+A Sbjct: 239 ELQQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGTRAQTIIKLA 298 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + ++P+ E LA+ L +V + IP ++ VA ++ + + + Sbjct: 299 EKFDVPVVENVRLAQMLHNEVNCDEIIPEHLFEPVAAILRFVLNLE 344 >gi|68164507|gb|AAY87236.1| predicted flagellar biosynthetic protein [uncultured bacterium BAC17H8] Length = 385 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 83/358 (23%), Positives = 165/358 (46%), Gaps = 9/358 (2%) Query: 1 MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E N KTE P+ ++++ A EG S+E +F+++ A L+ L SP + S Sbjct: 1 MAEENQDGQEKTEEPTQRRLQKAAEEGRILTSKEVMVFTTLAAGLV-LFMGLSPFVASGL 59 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L + L+ + + + + LV+ L+ ++ + + Sbjct: 60 DAWGSLFRIDSGFNLDTLGLVKVRYAFWLVILATLVVGMPLIVVIILTQAAV--GGLNFA 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + R+ G+KRI+S+ LV KS +K+ L+ I + + ++ S+ Sbjct: 118 AQAMNFKGNRIDPIAGLKRIFSVKGLVELAKSVLKVGLLFGIGALVIYHQLPQLVFLSSS 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + + A ++ +L+ + + +D W H L+M+ +E+KDE KQ+ G+ Sbjct: 178 SLSQGVNRAAQAFPFLVGGLLIALLVIAAIDYAWQKHTHTQSLRMTLKEVKDESKQTEGS 237 Query: 240 PIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 P ++ + + + + + + + AT ++TNPTH+A+AL+Y + APV++A Sbjct: 238 PEVRAKIRRMQYQQAQESSRQREALGNVGDATTVVTNPTHFAVALKYAAGQEGAPVVLAM 297 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 G+ +A ++ + A E + P LAR+L+ I I Y AVA ++ ++ Sbjct: 298 GRGQMAMQIIERAKEARVRTLRIPMLARALYFTSEIGGEITEGLYNAVAVVLAYVFRL 355 >gi|330444474|ref|YP_004377460.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum E58] gi|328807584|gb|AEB41757.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum E58] Length = 359 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 148/346 (42%), Gaps = 2/346 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + + S + L L Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMSMAFYLSSFFYQHLGGFLVSTLT 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A D ++ L + +P L+ + G+ + PV + KP Sbjct: 62 QAPIN--HDPRLALYYLKNCLTLILAASLPLLVSVGIIGLIVGFLIVGPVFSTEVFKPDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + E IK+ + + L+ +KS KI I+ + L +++ P Sbjct: 120 KKFNPIENIKQKFKVKTLIELLKSVFKIFGAALILYVVLKNRVPLIIETAGVAPIVTAQI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K + I +F + VLD+ + H + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKQIFYKAVTSIGIFFVVVAVLDLVYQRHNFSKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDPSSQIKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILAEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IPI LA L+ + IP Y+A+ +++ I + Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSLQ 345 >gi|62185075|ref|YP_219860.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62148142|emb|CAH63899.1| putative membrane transport protein [Chlamydophila abortus S26/3] Length = 360 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 81/345 (23%), Positives = 148/345 (42%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + + S + S L + Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A D ++ L + +P L GI + P + KP Sbjct: 62 EAPIN--HDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVGPTFSTEVFKPDL 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + E +K+ + + L+ +KS +KI I+ ++L +++ +P I Sbjct: 120 KKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIAVI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + K + I +F + VLD+ + + +LKM K E+K E K + GN IK R++ Sbjct: 180 FKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNLEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ YI + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYIPEKYKAPWIIAMGINLRAKRIITEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ IPI LA L+ + IP Y+A+ +++ I Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344 >gi|255745141|ref|ZP_05419090.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101] gi|262153469|ref|ZP_06028599.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1] gi|255736971|gb|EET92367.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101] gi|262030706|gb|EEY49340.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1] Length = 330 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 150/305 (49%) Query: 49 FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108 +F + L ++ ++ D+ + ++ ++ ++ L + + Sbjct: 1 MWFGEILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALI 60 Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 + P +++ G+KR++ + + V +KS +K++LV + + Sbjct: 61 GAAGVGGISFSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEA 120 Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228 + + ++HA + +++I + + +DI + Q +LKM+KQE Sbjct: 121 SQKDLFQLSLDVYPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 180 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K + G P +K R + + R + +MM A +A +IITNP H+++ALRY Q + A Sbjct: 181 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 240 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R+IA E++I I P LAR+L+ + IP + AVAQ++ Sbjct: 241 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 300 Query: 349 IYHKK 353 ++ K Sbjct: 301 VFQLK 305 >gi|255523688|ref|ZP_05390654.1| type III secretion exporter [Clostridium carboxidivorans P7] gi|296186692|ref|ZP_06855094.1| putative flagellar biosynthetic protein FlhB [Clostridium carboxidivorans P7] gi|255512557|gb|EET88831.1| type III secretion exporter [Clostridium carboxidivorans P7] gi|296048729|gb|EFG88161.1| putative flagellar biosynthetic protein FlhB [Clostridium carboxidivorans P7] Length = 283 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 81/267 (30%), Positives = 147/267 (55%), Gaps = 1/267 (0%) Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + +P +L M G+ + +Q ++ +KP F +++ G KRI+S+ ++ Sbjct: 15 VVWRIGIIFLPVVLPIMFMGVLANFLQTGALITSEPLKPDFSKLNPINGFKRIFSMRTVM 74 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 K + +VG + + +NY +L S N ++ + I + + + Sbjct: 75 ELFKDLAMVSIVGFVGYKFVKDNYEYILTLGSLNAQAVAAAVSKLTINIFFRITILMIII 134 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 ++D + Q+ LKMSKQE+K+E KQ G+P IK++ K R +MM+ +AT Sbjct: 135 ALIDYVYQRFQFNKDLKMSKQEVKEEYKQDEGDPQIKSKIKQKQREMATRRMMQEVPKAT 194 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 +++TNPTH A+AL+Y Q +APV+ AKG + +A K+++IA E+++PI E LAR ++ Sbjct: 195 VVVTNPTHIAVALKY-QEGLNAPVVAAKGADRVALKIKEIAKENDVPIIENKPLARLMYS 253 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 +V ++ IP Y+AVA+++ +Y K Sbjct: 254 EVELDEEIPMDMYEAVAEILALVYKIK 280 >gi|254446395|ref|ZP_05059871.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235] gi|198260703|gb|EDY85011.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235] Length = 369 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 187/351 (53%), Gaps = 2/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D D+KTE P++K++ D +GN P ++E + ++LA L+ ++F + S Sbjct: 1 MADTD-QDSKTEKPTAKRLTDEQEKGNFPQAQEVGVTFTLLAGLLVVMFSGQTIASNAFS 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L ++I + + + RL P +L M+ GI + +Q Sbjct: 60 FSSSILGNLSSIDLS-TNNISYFFNEVIVVLGRLAAPFMLAGMVSGIIAGGLQTRFRFTP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F +++ G K++ S + V F +K+ +G I+ +++ + + + + Sbjct: 119 KALGIKFNKLNPINGAKQLVSKDVFVRFGIDLLKMGAMGLILWVAMRKIIKDPIFYAPID 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + T+ V I + + + + ++ W + K+KM+K+E+K E K +P Sbjct: 179 IVHVGMFITDTLVYVFIRLTIAVGLIAIISYLWQSKKTMDKMKMTKEEVKQERKDQDMSP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ + +A ++ +M++ + A +++TNPTHYA+AL+Y + + AP+++AKG+N A Sbjct: 239 EIRKARMQMAMRLMQGQMLDEVATADVVVTNPTHYAVALKYERGVDSAPMVLAKGENAFA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++++++A EH +P+ E +AR L+K + +AIP +++VA+++ +Y Sbjct: 299 QRIKEVAAEHGVPVVENKMVARMLYKVAQVGAAIPMEMFQSVAEILAFVYK 349 >gi|170690587|ref|ZP_02881754.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis C4D1M] gi|170145022|gb|EDT13183.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis C4D1M] Length = 373 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 166/344 (48%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ K++ D +G S + +++ A + L F + ++ S + L Sbjct: 2 SEEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVVGVLAFAAASFGGALRSIVTTAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ D + L L A +++P + + + + + Q + V P Sbjct: 62 EFASGN--HDQPLMYGKLFDLGKQALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K VS +G+KRI+S +++ +K VK ++G ++ ++ ++ + + Sbjct: 120 LKHVSPVDGVKRIFSWRTVIDLVKMIVKAAIIGVVMWFTIKWILPLIVGSLYQPLPELSK 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + K+ + + + V+D+ + KLKMSK E+K E KQ G+P IK + Sbjct: 180 LFWSLLIKLFAVAVAVFIAIGVIDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 239 Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K +AR + A +I NPTHYA+A+RY E+ P+++A+G + A ++R+ Sbjct: 240 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGMDESAAQLRR 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + N+PI P +AR+L++ V I+ IP ++ VA ++ + Sbjct: 300 FARDANVPIIGNPPVARALYR-VGIDEPIPEELFETVAAILRWV 342 >gi|53722427|ref|YP_111412.1| type III secretion system protein HrcU [Burkholderia pseudomallei K96243] gi|52212841|emb|CAH38875.1| putative type III secretion-associated protein [Burkholderia pseudomallei K96243] Length = 352 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + + L A V+P L + + GIG ++Q ++L V P+ Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K+++S + + +K VK ++V + ++ + + + +P + Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K L+++ + D+ + K+KM+K E+K E K G+P++K + Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+ Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDEAAIALRRA 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|126462469|ref|YP_001043583.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17029] gi|126104133|gb|ABN76811.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17029] Length = 380 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 169/360 (46%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE P+ K+ E A +G+ S+E +F++ LA + LL + ++ Sbjct: 1 MAEGEDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117 L LE I+ + L + ++I GL++ + L+Q Sbjct: 60 GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234 Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++ Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y Sbjct: 295 AMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354 >gi|182412230|ref|YP_001817296.1| type III secretion exporter [Opitutus terrae PB90-1] gi|177839444|gb|ACB73696.1| type III secretion exporter [Opitutus terrae PB90-1] Length = 367 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 171/351 (48%), Gaps = 2/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E+D D KTE PS KK+ +A++ G S E ++ ++A L L F V + Sbjct: 1 MAEHD-QDQKTEQPSEKKLSEAMDRGQFARSPELAVLFLLVAVLAALSFSVREASREVAT 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + K+E + I L++ + P LL ++ + + +Q L Sbjct: 60 YAASLFSRFGSMKVEHDT-IRAYFGEAMLTSGTALAPLLLACVVAALLAGGVQSGFRLTP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +R++ EG KR+++ + LV +K++ +G + + L Sbjct: 119 EAFGFKPERLNPVEGFKRVFNKSALVRAGVDLLKLVALGAALYLGARGLMMDPLFSAPVE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L ++L + +T + + + + L M++QE+KDE K G+ Sbjct: 179 AAYLGQFLTDATYVFLSRLILALGVITAISYSYEKFKTHRDLMMTRQELKDEHKNQEGSS 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 K + +AR + +MM A A +++TNPTH+A+AL+Y + ++ APV++AKG+N A Sbjct: 239 QAKMAMRRMARRLTQRQMMSAVPTADVVVTNPTHFAVALKYERGKDAAPVVLAKGENRFA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++++ IA EH +P+ E +AR LF + AIPP Y+AVA ++ +Y Sbjct: 299 QRIKAIAAEHGVPMVENKPVARLLFSMGKVGEAIPPELYQAVASILAVVYR 349 >gi|146277693|ref|YP_001167852.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17025] gi|145555934|gb|ABP70547.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC 17025] Length = 380 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 169/360 (46%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P+ K+ + A +G+ S+E +F++ LA + LL + ++ Sbjct: 1 MAEGDDGQEKTEEPTQKRRDQAREDGSIVTSKEVFVFAT-LAGGLALLVMLQGMLPALVR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117 L L+ + ++ L +++ GL++ + + L+Q Sbjct: 60 GWSGYLVLEPGADLDRV-----MMLRLGQVWREVLLAGLIVSVPLLVVVLLVQYGMGGIN 114 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 115 FSTKAMAFKASRINPGAGLKRMVSMKALVELGKAIAKVSLLIGVAVLVLRDELAPLDRLW 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 ++ P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K++ Sbjct: 175 TSAPADAAAVMGVGLIRLVSALLIVLALIGGLDLVWQAWSLTNSMKMSRQELKEESKEAN 234 Query: 238 GNPIIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K R + + + +E +AT I+TNPTH+A+ALRY+ E APV++ Sbjct: 235 GSPEVKGRMRRMQMEASQNGAKRRAALENVPQATAIVTNPTHFAVALRYVPGETTAPVIL 294 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ +A + + + + P LAR+L+ I IP Y AVA ++ +Y Sbjct: 295 ALGKGPMALDIIERGRKAGVGTLRIPVLARALYFTGDIGQEIPDQLYGAVAAVLAHVYRL 354 >gi|103488400|ref|YP_617961.1| flagellar biosynthesis protein FlhB [Sphingopyxis alaskensis RB2256] gi|98978477|gb|ABF54628.1| type III secretion exporter [Sphingopyxis alaskensis RB2256] Length = 379 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 167/353 (47%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P++KK D+ EG+ +SRE + +LA +++ + S Sbjct: 1 MAEGPDKDQKTEQPTAKKRADSTREGDVLMSRELATALMMLAAAGWIVAAGGWFVQSAGD 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + T + D + L+ + + L + + + Sbjct: 61 LVRRGL-TLTAADVADFAPGEALMRN-GAEILLPLTSLFALALGAAVAGPAMLGSMGWRG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + R++ G+KR++ + K+ K+IL+G I + + ++ ++ Sbjct: 119 KALHFKGNRINPMSGLKRMFGMQGATELGKAIAKVILLGGIGYWLVARSLPAIMSMAGSD 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + A + ++ + + + ++D+ + Q +L MSK EIKDE++QS G P Sbjct: 179 LIAAIGLAGKAIGHAMLALAGGLVVIALIDVPVQWFQRNKRLMMSKHEIKDEMRQSDGAP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K Q+ A + +A S AT+++TNPTH+++ALRY + APV+VA+G+ +A Sbjct: 239 ELKQAQRQRAHEILSGSARKAVSEATVVLTNPTHFSVALRYRPGTDAAPVVVARGRGDVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A N+P+ E P L R+++ IP + AVA ++ ++ + Sbjct: 299 LSIRELARAANVPMLEYPQLTRAIYFTARAGRTIPEELFVAVATVLAFVFQLE 351 >gi|237508977|ref|ZP_04521692.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] gi|235001182|gb|EEP50606.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 352 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADYFGDAMRALVNGAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + + L A V+P L + + GIG ++Q ++L V P+ Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K+++S + + +K VK ++V + ++ + + + +P + Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K L+++ + D+ + K+KM+K E+K E K G+P++K + Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+ Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRA 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|126442638|ref|YP_001062991.1| type III secretion system protein HrcU [Burkholderia pseudomallei 668] gi|254194161|ref|ZP_04900593.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|254301605|ref|ZP_04969049.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|126222129|gb|ABN85634.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 668] gi|157811543|gb|EDO88713.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|169650912|gb|EDS83605.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] Length = 352 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + + L A V+P L + + GIG ++Q ++L V P+ Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K+++S + + +K VK ++V + ++ + + + +P + Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K L+++ + D+ + K+KM+K E+K E K G+P++K + Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR + A ++ NPTHYA+A+RY E+ P +VAKG + A +R+ Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRA 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|134282484|ref|ZP_01769188.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|134246041|gb|EBA46131.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] Length = 352 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + + L A V+P L + + GIG ++Q ++L V P+ Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K+++S + + +K VK ++V + ++ + + + +P + Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K L+++ + D+ + K+KM+K E+K E K G+P++K + Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+ Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDEAAIALRRA 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|193062073|ref|ZP_03043169.1| EscU [Escherichia coli E22] gi|194426490|ref|ZP_03059045.1| EscU [Escherichia coli B171] gi|260845709|ref|YP_003223487.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009] gi|13447704|gb|AAK26703.1|AF200363_11 EscU [Escherichia coli] gi|18034508|gb|AAL57530.1|AF453441_14 EscU [Escherichia coli] gi|57434469|emb|CAI43886.1| EscU protein [Escherichia coli] gi|192932293|gb|EDV84891.1| EscU [Escherichia coli E22] gi|194415798|gb|EDX32065.1| EscU [Escherichia coli B171] gi|195183210|dbj|BAG66755.1| T3SS structure protein EscU [Escherichia coli O111:H-] gi|254692328|emb|CAR47969.1| EscU protein [Escherichia coli] gi|254692396|emb|CAR48039.1| EscU protein [Escherichia coli] gi|257760856|dbj|BAI32353.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009] gi|323163021|gb|EFZ48854.1| hypothetical protein ECE128010_0617 [Escherichia coli E128010] Length = 345 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 160/338 (47%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D +G+ S E L + + + V ++ + S Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I+ + ++ L ++P L+ + + + + Q + + +KPS + Sbjct: 63 LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S++ +K I+S+ ++ +KS K++++ I +F N + L Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTLVVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++ Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++IP+ E+ LARSL+K + I F++ VAQLI Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|3435112|gb|AAC32325.1| flagellar protein FlhB [Rhodobacter sphaeroides] Length = 376 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 168/360 (46%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D KTE P+ K+ E A +G+ S+E +F++ LA + LL + ++ Sbjct: 1 MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117 L LE I+ + L + ++I GL++ + L+Q Sbjct: 60 GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + R++ G+KR+ S+ LV K+ K+ L+ + + L + + Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +A P + +++ +L+ +A + LD+ W + +KMS+QE+K+E K+S Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234 Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K R + + R ++ +AT I+TNPTH+A+ALRY+ E APV++ Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ +A + + + + P LAR+L+ I IP AVA ++ +Y Sbjct: 295 AMGKGPMALDIIERGRKAGVGTVRIPLLARALYFTGDIGQEIPDGLDGAVAVVLAHVYRL 354 >gi|76819009|ref|YP_335586.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1710b] gi|126456589|ref|YP_001075938.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1106a] gi|167898600|ref|ZP_02486001.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|217425368|ref|ZP_03456862.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|226199022|ref|ZP_03794584.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|242312446|ref|ZP_04811463.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|254183801|ref|ZP_04890393.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|254186715|ref|ZP_04893231.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|254264656|ref|ZP_04955521.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] gi|76583482|gb|ABA52956.1| SctU [Burkholderia pseudomallei 1710b] gi|126230357|gb|ABN93770.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106a] gi|157934399|gb|EDO90069.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|184214334|gb|EDU11377.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|217391619|gb|EEC31647.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|225928797|gb|EEH24822.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|242135685|gb|EES22088.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|254215658|gb|EET05043.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] Length = 352 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + + L A V+P L + + GIG ++Q ++L V P+ Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K+++S + + +K VK ++V + ++ + + + +P + Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K L+++ + D+ + K+KM+K E+K E K G+P++K + Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+ Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|85706162|ref|ZP_01037257.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217] gi|85669326|gb|EAQ24192.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217] Length = 362 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 2/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+ + K S K+++A +G S + + S L+ LL P + + Sbjct: 1 MAGEEDESEKPHEASQNKMDEARKKGEIARSADLNTAGSYGGLLLALLALGGPVSQTTGA 60 Query: 61 DLHVLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 +L VLL A L H L + + V LL + + + QR V+ Sbjct: 61 NLAVLLGQPHAFADLLFQGGHASAALGTVLTKVALAVSALFLLPAAVTLLTVIAQRAFVI 120 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + ++P R++ E K + + L F KS K+ L ++ + L+ M+ + Sbjct: 121 APSKLEPKLSRINPIENAKNKFGASGLFEFGKSIAKLSLYCILLGLFLSYRMSEMVGALH 180 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 A P I + + L+++LL + D W + + + +MS E++DE KQ+YG Sbjct: 181 AEPAMIGVMIGQLIIEFLLVVLLITLAVGAADFTWQFFEHLRRQRMSHMELRDEFKQNYG 240 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P +K + + +MM + ++I NPTHYA+AL++ + AP+ VAKG + Sbjct: 241 DPAVKQQHRRRGMDIASRQMMAEVPGSDVVIVNPTHYAIALKWSRAPGAAPICVAKGVDH 300 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 IA +R +AYE +P+ ++P+ AR+L I I P +Y AVA I Sbjct: 301 IALAIRDLAYESGVPVQQDPATARALHATTEIGQEIDPTYYAAVAVAIRY 350 >gi|323530321|ref|YP_004232473.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1001] gi|323387323|gb|ADX59413.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1001] Length = 373 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 167/344 (48%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ K++ D +G S + +++ A + L F + ++ S + L Sbjct: 2 SEEKTEQPTDKRLRDTRKDGETSKSTDLVDAATMAAVVGVLAFAAANFGGALRSIVSTAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ R D + L L A +++P + + + + + Q + V P Sbjct: 62 EFASGR--HDEPLMFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K VS +G+KRI+S +++ +K +K ++G ++ ++ ++ + + Sbjct: 120 LKHVSPVDGVKRIFSWRTVIDLVKMVIKAAIIGAVMWFTIKWILPLIVGSLYQPLPELSK 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + V KV + + + V+D+ + KLKMSK E+K E KQ G+P IK + Sbjct: 180 LFWSLVIKVFAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 239 Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K +AR + A +I NPTHYA+A+RY E+ P+++A+G + A ++R+ Sbjct: 240 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGMDESAAQLRR 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + N+PI P +AR+L+K V ++ IP ++ VA ++ + Sbjct: 300 FARDANVPIIGNPPVARALYK-VGLDEPIPEELFETVAAILRWV 342 >gi|215488991|ref|YP_002331422.1| secretion system apparatus protein SsaU [Escherichia coli O127:H6 str. E2348/69] gi|260869698|ref|YP_003236100.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128] gi|312967936|ref|ZP_07782148.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|2865279|gb|AAC38372.1| EscU [Escherichia coli] gi|54311603|emb|CAG17518.1| EscU protein [Escherichia coli] gi|215267063|emb|CAS11508.1| T3SS structure protein EscU [Escherichia coli O127:H6 str. E2348/69] gi|221361437|emb|CAX18590.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361494|emb|CAX18665.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361555|emb|CAX18745.1| Type III secretion system, LEE associated [Escherichia coli] gi|257766054|dbj|BAI37549.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128] gi|312287497|gb|EFR15405.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|323178898|gb|EFZ64474.1| hypothetical protein ECOK1180_2632 [Escherichia coli 1180] Length = 345 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 159/338 (47%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D +G+ S E L + + + ++ + S Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I+ + ++ L ++P L+ + + + + Q + + +KPS + Sbjct: 63 LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S++ +K I+S+ ++ +KS K++++ I +F N + L Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++ Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++IP+ E+ LARSL+K + I F++ VAQLI Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|307725656|ref|YP_003908869.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1003] gi|307586181|gb|ADN59578.1| type III secretion protein, YscU/HrpY family [Burkholderia sp. CCGE1003] Length = 388 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 166/344 (48%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ K++ D +G S + +++ A L L F + ++ S +++ L Sbjct: 24 SEEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVLGVLAFAAAHFGGALRSIVNIAL 83 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + D + L L A +++P + + + + + Q + V P Sbjct: 84 EFVSGS--HDQPLMFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 141 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K VS +G KRI+S +++ +K VK ++G ++ ++ ++ + + Sbjct: 142 LKHVSPVDGFKRIFSWRTVIDLVKMIVKAAIIGAVMWFTIKWILPLIVGSLYQPLPELSK 201 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + K+ + + + V+D+ + KLKMSK E+K E KQ G+P IK + Sbjct: 202 LFWSLLVKLCAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 261 Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K +AR + A +I NPTHYA+A+RY E+ P+++A+G + A ++R+ Sbjct: 262 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAVRYAPAEHPLPLVIARGMDESAAQLRR 321 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + N+PI P +AR+L+K V I+ IP ++ VA ++ + Sbjct: 322 FARDANVPIIGNPPVARALYK-VGIDEPIPQELFETVAAILRWV 364 >gi|304392516|ref|ZP_07374456.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130] gi|303295146|gb|EFL89506.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130] Length = 354 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 118/346 (34%), Positives = 195/346 (56%), Gaps = 1/346 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D +K+E PS KKI+DAL++G +SRE ++ +S++ +++ F ++ Sbjct: 1 MSDEDDG-SKSEEPSEKKIKDALDKGQTAVSREVAIVASLIVLTVFVSTFARDMAVGLSD 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L A ++ S L ++ AS + L++ ++ + S IQ P + Sbjct: 60 KLGGLWEHAGTIRILSGSDAATLSGSIAAEASLALAAFLIMVIIGALISAFIQAEPRMVA 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P ++R+S +G KR++ L +F K K+ + T + L M+ + Sbjct: 120 DRITPKYERISPAKGAKRLFGQQGLFDFAKQLAKLSVATTAVVSVLAGAPEKMMQAMPLG 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P+ I + +L ILL + + V+D+ W+ W L+MS +E+KDE+KQS G+P Sbjct: 180 PYYIGDTVRDLLGGMLTAILLAMVFVAVVDVVWTRFSWRKGLRMSLKEVKDEVKQSDGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+K RQ+S+AR R R++MMEA AT+++ NP H A+ALRY T++ APV+VAKGQ + Sbjct: 240 IVKARQQSVARDRARNRMMEAVPNATLVVANPIHVAVALRYDPTKDVAPVVVAKGQERLC 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++R+IA E +P+ E +AR L K VP+ + IP FY VA+LI Sbjct: 300 WRIREIAEEAGVPVVENIPVARGLHKSVPLGALIPESFYVVVAELI 345 >gi|300310132|ref|YP_003774224.1| type III secretion HrcU transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072917|gb|ADJ62316.1| type III secretion HrcU transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 371 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 161/346 (46%), Gaps = 3/346 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D+K E P+ KKIEDA +G +SR+ + +++A + L S +V + + + Sbjct: 2 SDDKNEEPTDKKIEDAKKKGQIAVSRDLARLVTLVAVMEAALAADSLWRGAVFNLMEGGV 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 Q + + + LT + + L++ + + + Q ++ ++P Sbjct: 62 LGVGQ---DFQTAMNNQLTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIATEALEPK 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +++ GIK+I+S LV + K L+ ++ ++ + P + Sbjct: 119 LDKLNPVNGIKQIFSKKKLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGGEPKDVYE 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +R + +I++ L V+D + L M ++EIK E K+S G+P++K ++ Sbjct: 179 AFVTLLRNIFHLIIVVCLVLGVIDYAVQKYFHKKDLMMDQEEIKREFKESEGDPMVKGQR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR T +A ++ NPTH+A+A+ Y E P+++AKG++ IA+ M Sbjct: 239 KQLARQWANEAPAAKTEKANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEIAQAMIAR 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A+ IP+ LAR+L+ + +P Y+AVAQ+ ++ Sbjct: 299 AHACGIPVIRHVWLARTLYATCQDDMPVPRSSYQAVAQVYAVVHEL 344 >gi|330505669|ref|YP_004382538.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] gi|328919955|gb|AEB60786.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01] Length = 377 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 172/353 (48%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + KTE S+ K++ + ++G S++ S S++A L L F + + Sbjct: 1 MSEQSSGQEKTEEASAHKLKKSKDDGQVARSKDLSTTISLIATLFILKFSAGLFLEGLND 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + + LL + L +L+ LLL + + L+ V + Sbjct: 61 SFRLSYIQFGHSEI-GLDDLDTLLGYNMLVFIKLLA-PLLLTSLLVVVLSLVPGGWVFSA 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ G+ RI+S N +KS +K++++ + + + ++ ++ Sbjct: 119 KNFAPKFSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPDLIALQRSS 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + AF + + ++L + +DI + + KL+M+KQE K+E K G P Sbjct: 179 VLEAVSAAFDLTFNLTLCLMLIFVVFSFIDIPLQRYFFLKKLRMTKQERKEEHKNQEGRP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R K + R ++ ++ A ++I NPTHYA+AL+Y + AP ++AKG + A Sbjct: 239 EVKARIKQLQRQMLQRQISRVIKNADVVIVNPTHYAVALKYDTQKAAAPFVLAKGVDETA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 MR++A +H++ + E P LAR+++ IN IP Y AVA ++ I K Sbjct: 299 LYMRQMAAKHSLEVVEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQLK 351 >gi|15804241|ref|NP_290280.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 EDL933] gi|15833834|ref|NP_312607.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. Sakai] gi|168748643|ref|ZP_02773665.1| EscU [Escherichia coli O157:H7 str. EC4113] gi|168753530|ref|ZP_02778537.1| EscU [Escherichia coli O157:H7 str. EC4401] gi|168759827|ref|ZP_02784834.1| EscU [Escherichia coli O157:H7 str. EC4501] gi|168766127|ref|ZP_02791134.1| EscU [Escherichia coli O157:H7 str. EC4486] gi|168772324|ref|ZP_02797331.1| EscU [Escherichia coli O157:H7 str. EC4196] gi|168779862|ref|ZP_02804869.1| EscU [Escherichia coli O157:H7 str. EC4076] gi|168785595|ref|ZP_02810602.1| EscU [Escherichia coli O157:H7 str. EC869] gi|168798676|ref|ZP_02823683.1| EscU [Escherichia coli O157:H7 str. EC508] gi|195936263|ref|ZP_03081645.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. EC4024] gi|208808072|ref|ZP_03250409.1| EscU [Escherichia coli O157:H7 str. EC4206] gi|208813986|ref|ZP_03255315.1| EscU [Escherichia coli O157:H7 str. EC4045] gi|208819764|ref|ZP_03260084.1| EscU [Escherichia coli O157:H7 str. EC4042] gi|209398003|ref|YP_002273176.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. EC4115] gi|217326036|ref|ZP_03442120.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. TW14588] gi|254795655|ref|YP_003080492.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. TW14359] gi|261225799|ref|ZP_05940080.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK2000] gi|261258844|ref|ZP_05951377.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK966] gi|291285068|ref|YP_003501886.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. CB9615] gi|12518474|gb|AAG58844.1|AE005597_2 escU [Escherichia coli O157:H7 str. EDL933] gi|3414914|gb|AAC31525.1| L0046 [Escherichia coli] gi|13364055|dbj|BAB38003.1| type III secretion system EscU protein [Escherichia coli O157:H7 str. Sakai] gi|187771533|gb|EDU35377.1| EscU [Escherichia coli O157:H7 str. EC4196] gi|188016976|gb|EDU55098.1| EscU [Escherichia coli O157:H7 str. EC4113] gi|189002618|gb|EDU71604.1| EscU [Escherichia coli O157:H7 str. EC4076] gi|189359336|gb|EDU77755.1| EscU [Escherichia coli O157:H7 str. EC4401] gi|189364785|gb|EDU83204.1| EscU [Escherichia coli O157:H7 str. EC4486] gi|189369865|gb|EDU88281.1| EscU [Escherichia coli O157:H7 str. EC4501] gi|189374533|gb|EDU92949.1| EscU [Escherichia coli O157:H7 str. EC869] gi|189378742|gb|EDU97158.1| EscU [Escherichia coli O157:H7 str. EC508] gi|195957531|gb|ACG59642.1| type III secretion system protein EscU [Escherichia coli O157:H7] gi|195957590|gb|ACG59700.1| type III secretion system protein [Escherichia coli] gi|195957647|gb|ACG59756.1| type III secretion system apparatus protein SsaU [Escherichia coli] gi|208727873|gb|EDZ77474.1| EscU [Escherichia coli O157:H7 str. EC4206] gi|208735263|gb|EDZ83950.1| EscU [Escherichia coli O157:H7 str. EC4045] gi|208739887|gb|EDZ87569.1| EscU [Escherichia coli O157:H7 str. EC4042] gi|209159403|gb|ACI36836.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. EC4115] gi|217322257|gb|EEC30681.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. TW14588] gi|254595055|gb|ACT74416.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|255348328|gb|ACU09470.1| secretion system apparatus protein SsaU [Escherichia coli] gi|290764941|gb|ADD58902.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. CB9615] gi|320639370|gb|EFX08985.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. G5101] gi|320644814|gb|EFX13850.1| secretion system apparatus protein SsaU [Escherichia coli O157:H- str. 493-89] gi|320650078|gb|EFX18574.1| secretion system apparatus protein SsaU [Escherichia coli O157:H- str. H 2687] gi|320655425|gb|EFX23360.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661051|gb|EFX28487.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7 str. USDA 5905] gi|320666177|gb|EFX33183.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7 str. LSU-61] Length = 345 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 159/338 (47%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D +G+ S E L + + + ++ + S Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I+ + ++ L ++P L+ + + + + Q + + +KPS + Sbjct: 63 LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S++ +K I+S+ ++ +KS K++++ I +F N + L Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++ Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++IP+ E+ LAR+L+K + I F++ VAQLI Sbjct: 300 LYDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLI 337 >gi|225871939|ref|YP_002753393.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC 51196] gi|225794521|gb|ACO34611.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC 51196] Length = 409 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 84/351 (23%), Positives = 171/351 (48%), Gaps = 8/351 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 +TE S ++ ++A +G+ P SR+ + +++LA + L + +L Sbjct: 2 SGERTEKASPRRKQEAREKGDIPHSRDLTSAAAMLAGTLVLGWAGPMWEARWAGSYSEML 61 Query: 67 ASATQRKLEDISHIVFLLT--HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNHV 123 + R D + +L ++ ++ L + + + Q V + Sbjct: 62 DLSQPRSWLDGQMVEKMLAIRAAMMTVLWPLVVMFLACFAAAVLAGVAQGRGVQFAGEAI 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P +R++ +++ +S L +KS + + + + + E I + Sbjct: 122 APKIERLNPLTVLQQTFSSRGLTRMLKSALPVAALACFVAGKVREQ-----TAIPVFSLT 176 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L F ++ +++ + + +D + W +L+MSKQE+++E KQ+ GNP ++ Sbjct: 177 RLPSLFTSMYSLMVAAAAVLFVWSAIDYAVEWWSWEQRLRMSKQEVREEFKQTEGNPEVR 236 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R SI R R + SRA+++ITNPTHYA+AL++ +AP ++AKG++L+A+++ Sbjct: 237 RRIASIRRQLRRKALRADVSRASVVITNPTHYAVALQFSLELMEAPRVLAKGRDLLAEQI 296 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 ++ A +P+ E P LAR+L++QV + +IP Y AVA ++ +Y + + Sbjct: 297 KQEARWAGVPLVENPPLARALYRQVEVGQSIPFALYAAVAAILAWLYRRDM 347 >gi|167573406|ref|ZP_02366280.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 366 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 172/350 (49%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E KTE PS KK++ +G S++ + ++ A + L S ++ Sbjct: 1 MAE-----EKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTAGESMLGGGLSR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L L+ SA+ +++P + ++ G+ S Q ++ L Sbjct: 56 VMRTALDFVHGER--TPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F ++ GIKRI+S+ +L+ +K VK +++ ++ +T + ++ + Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + K+L ++++ ++ L D + + + +M+K+E K E K+S G+P Sbjct: 174 TPQLSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEGDP 233 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K + Sbjct: 234 HTKGERRRLAREIATSAAPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A+ +PI P +AR+L++ + ++AIP ++ VA ++ + Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAILRWV 342 >gi|167566304|ref|ZP_02359220.1| type III secretion system protein [Burkholderia oklahomensis EO147] Length = 372 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 172/350 (49%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E KTE PS KK++ +G S++ + ++ A + L S ++ Sbjct: 1 MAE-----EKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTAGESMLGGGLSR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L L+ SA+ +++P + ++ G+ S Q ++ L Sbjct: 56 VMRTALDFVHGER--TPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F ++ GIKRI+S+ +L+ +K VK +++ ++ +T + ++ + Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + K+L ++++ ++ L D + + + +M+K+E K E K+S G+P Sbjct: 174 TPQLSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEGDP 233 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K + Sbjct: 234 HTKGERRRLAREIATSAAPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A+ +PI P +AR+L++ + ++AIP ++ VA ++ + Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAILRWV 342 >gi|329901844|ref|ZP_08272932.1| Type III secretion inner membrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327548981|gb|EGF33597.1| Type III secretion inner membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 365 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 159/345 (46%), Gaps = 3/345 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+EDA +G P+SR+ + ++ + L F ++ L L + Sbjct: 3 EKTEQPTDKKLEDAREKGQVPVSRDMARLATFFVIGL-LAFVTEKLWHASIDSLFEL--A 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + ++T + + + I ++ Q +L+ ++P Sbjct: 60 FLRIGAPFVPAMYEMVTVAGKLLLVIFGAIAITGTVVAIMAFWGQFGILLSAKALEPKLD 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +G+ +++S LV + S K +L+G ++ + + + T+L P + Y Sbjct: 120 KLNPVQGMMQLFSKRKLVELVVSLAKAVLIGYVLYLVILDQLPTILKLSGGTPRDVYYGF 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + + + +++D+ H L MS EIK E K+S G+P++K +K Sbjct: 180 VEMLFSIFKIAVGICFAFSLVDLVSQRHFHTKSLMMSMDEIKREYKESEGDPLVKGTRKQ 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +A+ + T A ++ NPTH+A+AL Y P+++AKG++ A M A+ Sbjct: 240 LAQEWANEEPASRTQDANAVVVNPTHFAVALFYDFDAPSVPMVLAKGKDETAHAMIARAH 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ IP+ LAR+L+ + IP Y++VA + I + Sbjct: 300 QYKIPVIRHVWLARTLYATAKPDHPIPKASYESVAHVYAVIQEMR 344 >gi|323189404|gb|EFZ74685.1| hypothetical protein ECRN5871_2292 [Escherichia coli RN587/1] Length = 345 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 158/338 (46%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D +G+ S E L + + + ++ + S Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I+ + ++ L ++P L+ + + + + Q + + +KPS + Sbjct: 63 LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S++ +K I+S+ ++ +KS K++++ I F N + L Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFAYFTGLNAYQALVVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++ Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++IP+ E+ LARSL+K + I F++ VAQLI Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|48479060|gb|AAT44853.1| transmembrane protein [Burkholderia pseudomallei] Length = 352 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + + L A V+P L + + GIG ++Q ++L V+P+ Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVRPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K+++S + + +K VK ++V + ++ + + + +P + Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K L+++ + D+ + K+KM+K E+K E K G+P++K Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGEC 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+ Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341 >gi|312115253|ref|YP_004012849.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100] gi|311220382|gb|ADP71750.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100] Length = 353 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 119/352 (33%), Positives = 205/352 (58%), Gaps = 1/352 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++N DNKTEAPS K++ D+L++ P SRE + +++ A +++L+ V Sbjct: 1 MADNSETDNKTEAPSEKRLRDSLDKDGGPSSREVNSAAALFALVLFLMTMAPADFGEVVK 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L V + + LE+ + F+L L+ +P +L+ + + + Q P L Sbjct: 61 NLSVFIEDPSGFSLENGADAFFILQLAGLTIFNFALPLVLMLLAATLLASFAQNPPTLIF 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N + P R+S + G+KR+++ + +V+ +KSF+K +V ++ +L + Sbjct: 121 NKIAPDLARISPQAGLKRLFAFDAVVDLLKSFIKFGIVAIAFYVAFQGGAAALLVL-QTD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + K +++ L A L V D+ W+ +W KLKMS+Q++KDE KQS G+P Sbjct: 180 SASTIELIKRLAFKAILICALACAVLAVADVFWTRFRWLRKLKMSRQDLKDEHKQSEGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ R ++IAR+R+R MM + AT++I NPTHYA+ALRY++ ++ AP +AKG+N +A Sbjct: 240 MLRARARAIARARVRRNMMTSVPNATVVIANPTHYAVALRYVRGQDRAPQTLAKGKNKLA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++R IA ++N+P+ E +LA+SL V ++ IP FYKAVA++I I K Sbjct: 300 LRIRSIAEDNNVPVVENKALAKSLHDAVRVDQPIPHEFYKAVAEVIIYINKK 351 >gi|84514803|ref|ZP_01002166.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53] gi|84510962|gb|EAQ07416.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53] Length = 383 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 169/360 (46%), Gaps = 12/360 (3%) Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M++ KTE P+ K++E A +G S+E + S++ + L F P + + Sbjct: 1 MADEASDGQEKTEEPTQKRLEKAKEDGQVASSKELFVLSTLSVGFL-LYFGLLPFLSGLL 59 Query: 60 SDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + LL + + L D I + + + +P L++ ++ + + Sbjct: 60 LEWSALLRFSGEAGLHDEIIRNSSTSFAFIFWKSVIFALPLLVIIVLTQMA---MSGSIN 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + + R++ G+KR++S+ LV +K+ K+ + + +L Sbjct: 117 WSASALAFKGSRINPVNGLKRMFSVKALVEMLKAVGKVASLIGAAIFVFSSEVDKLLTSQ 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L ++I+ LL +A + + D+ + + KLKM+ QE+KDE KQ+ Sbjct: 177 ATHLFGGLSRLGDVFIFLMIVFLLVLAVIAMFDVVYQQYDNNKKLKMTLQELKDESKQTE 236 Query: 238 GNPIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K + + + R++ R + ME AT IITNP H+A+AL+Y AP ++ Sbjct: 237 GSPEVKAKIRRLQMTAGSRAKQRREAMEQVPSATAIITNPIHFAVALKYEIGTRGAPTIL 296 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ A+++ ++ E + +F LAR+LF I IPP Y AVA ++ IY Sbjct: 297 AMGRGHQAQEIIRLGKEAGVTVFSNELLARALFFAGRIGDEIPPPLYTAVAAVLAFIYQL 356 >gi|302338096|ref|YP_003803302.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM 11293] gi|301635281|gb|ADK80708.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM 11293] Length = 379 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 173/349 (49%), Gaps = 8/349 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +KI A EG S E + +L ++ L ++ L Sbjct: 28 EDEGRTEDPTEQKIRKAREEGKVAKSSEFTSSLVLLFPIVALGILAPRMFGTMEEMLRYY 87 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L+ ++ L + F + RLV P + + + +IQ + + P Sbjct: 88 LSLLSEADLTGEQIVAFFRYFI-----RLVAPVASVAVAAALFGNIIQVGFLFTSKPITP 142 Query: 126 SFKRVSLREG--IKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 F ++ R G I+R + S L N MKS +K++++G I I++ N F++A Sbjct: 143 DFSKIVPRFGKFIQRSFLSGEALFNLMKSILKVLIIGIIAYINIKNNLDIFAFFVNAPFE 202 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 ++L+ + + L++ D + Q LKM+KQEIK+E K G+P+I Sbjct: 203 VAFSTIGSVAFRILVESSIALLALSLPDYLFQRRQHRESLKMTKQEIKEERKTMEGDPLI 262 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K+R + R + M+ A +IITNPTH+A+ + + + AP+++AKGQ+ +A++ Sbjct: 263 KSRLRERMRDVLNRNMIRKVPEADVIITNPTHFAVGMEWERERMVAPMVIAKGQDNMAQR 322 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++ IA EH++PI E LAR+L+ +V + IP +Y+ +A ++ ++Y Sbjct: 323 IKAIAREHDVPIVENKPLARALYAEVEVGEVIPERYYEVMATILAEVYR 371 >gi|320015476|gb|ADV99047.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 259 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 131/224 (58%) Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 +S G+KR++S L +K+ +K LVG + + L N+ M+ I+A P + L A Sbjct: 1 MSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDAL 60 Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249 + ++++L ++ + D+ + KL+M+KQ+I+DE K G+P +K R + Sbjct: 61 HLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQ 120 Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 R+ R +MM +A +I+TNPTHYA+AL+Y +++ AP ++AKG +A ++R++ E Sbjct: 121 QRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAE 180 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 H IP+ E P LAR+LF+ + IP Y AVA+++ +Y K Sbjct: 181 HRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 224 >gi|317014180|gb|ADU81616.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Gambia94/24] Length = 358 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSTKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|222100640|ref|YP_002535208.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM 4359] gi|221573030|gb|ACM23842.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM 4359] Length = 315 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 169/318 (53%), Gaps = 7/318 (2%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 + + L + L F GI S+ D+ L+ LE+ ++ L + ++ Sbjct: 1 MAITFLIFAVVLKIFGPQGIASIARDVSAFLS------LEETEDLLSALGYF-KDILLMI 53 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +L M GI IQ +L ++P R++ EG KR++S+ ++V +K+ +K+ Sbjct: 54 GALMLFTMAAGILVGAIQTRFLLAFKTLRPDLNRINPVEGFKRLFSLRSVVELLKAVMKV 113 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 +++G ++ L + ++ M+ + + +V + + + L V D + Sbjct: 114 VVIGVVVYQVLKDRWYEMVLLSDMELEDAFLNLWDVASEVSLKSGIALLALAVFDYAYQR 173 Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275 + ++M+KQE+KDE K+ GNP +K RQ+ + +R +MME +A ++ITNPTH+ Sbjct: 174 WDYEKSIRMTKQEVKDEFKEVEGNPEVKRRQRQMMYDILRRRMMEEVPKADVVITNPTHF 233 Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +AP +VAKG + +A K+ +IA E+ + I PSLAR+L+ +V I IP Sbjct: 234 AVALKYDPDTMNAPTVVAKGVDHLALKIIEIARENGVAIVRNPSLARTLYYRVEIGEEIP 293 Query: 336 PVFYKAVAQLIYKIYHKK 353 FY+ VA+++ +Y +K Sbjct: 294 VEFYRIVAEVLVYVYTRK 311 >gi|283786649|ref|YP_003366514.1| T3SS structural protein EscU [Citrobacter rodentium ICC168] gi|282950103|emb|CBG89738.1| T3SS structural protein EscU [Citrobacter rodentium ICC168] Length = 345 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 86/338 (25%), Positives = 157/338 (46%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D +G+ S E L + + + V ++ + S Sbjct: 3 EKTEKPTPKKIRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFIEVAGVVNTTINS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I L + V+P +L + + + + Q + + +KPS + Sbjct: 63 LNEPFLYSIHEI---LGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S++ +K I+S+ ++ +KS K++++ I ++F N + L Sbjct: 120 KISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQTLVII 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F + + +L +V D + H+ K+KMSK E+K E K + GNP IK ++ Sbjct: 180 AFFIFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++T+I+ NPTH A+ L Y E P+++ ++ A ++ K+A Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAKALQIIKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +NIP+ E+ LARSL+K + I F++ VAQLI Sbjct: 300 LYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|254779257|ref|YP_003057362.1| flagellar biosynthesis protein FlhB [Helicobacter pylori B38] gi|254001168|emb|CAX29127.1| Flagellar biosynthesis and export/adhesin [Helicobacter pylori B38] Length = 358 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSTKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLTKDTFLLLLPILIILMVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|89902466|ref|YP_524937.1| type III secretion exporter [Rhodoferax ferrireducens T118] gi|89347203|gb|ABD71406.1| type III secretion exporter [Rhodoferax ferrireducens T118] Length = 385 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 161/350 (46%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 + ++ S +K++ AL++G SR+ + + + L+ + L Sbjct: 2 EPSSQDRNLPASERKLQKALDDGQVSRSRDLGHLAVLGTGALSLMALAPLMFDRLRVLLR 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L S + + + ++ + ++ + + + + + S + V +L + Sbjct: 62 QQL-SFDALAVSNPTTMITRMQDMATAGLIGCVIFAAITTVAVLLSSIAAGGWVSSLKPI 120 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P F R++ G+ R+++ +K ++ T+ T L+ + + + Sbjct: 121 MPDFSRLNPLTGMGRMFTKEKFTEVLKMSFVAAMLITLGTTYLSSTIHALAMLVLQPSRA 180 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 L + + ++LL + + ++D+ S++KMS QE+K E K+S GNP +K Sbjct: 181 ALPMLTEWLTSGMALLLLVVLLVAMVDVPLQSFLHKSRMKMSHQEMKQEHKESDGNPQMK 240 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 + + R + A +A ++ NPTH+A+A++Y AP +V+KG +L+A K+ Sbjct: 241 GKLRQRQREISHGNSVGAVPKADFVLMNPTHFAVAIKYDDKTMRAPQVVSKGADLLAMKI 300 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R IA + IP+ + P LAR+L+ ++ IP Y AVAQ++ IY K Sbjct: 301 RDIAKNNAIPVLQSPMLARALYAHAELDQDIPASLYTAVAQVLAYIYRLK 350 >gi|300697466|ref|YP_003748127.1| Hypersensitivity response secretion protein hrcU, type III secretion exporter [Ralstonia solanacearum CFBP2957] gi|299074190|emb|CBJ53735.1| Hypersensitivity response secretion protein hrcU, Type III secretion exporter [Ralstonia solanacearum CFBP2957] Length = 354 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 156/347 (44%), Gaps = 10/347 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLH 63 D KTE P+ KK+EDA +G S + + +L+ + L FF ++ Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLD--- 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LA + + L H++L + +P +F + + Q VL+ V Sbjct: 59 --LALDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPV 116 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + ++ G+KRI+S+ ++++ +K +K V + + ++ + Sbjct: 117 ELKMNAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMD 176 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I + ++L L D G + +MSK E+K E K S G+P IK Sbjct: 177 IAEIGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236 Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A Sbjct: 237 GERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPDEYGLPRIIAKGVDDEALA 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +R+ A IPI P LAR+L++ V + A+P ++ VA+++ + Sbjct: 297 LREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342 >gi|170698356|ref|ZP_02889430.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] gi|170136695|gb|EDT04949.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] Length = 352 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 164/345 (47%), Gaps = 7/345 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++ EG S + +S+ + ++ L + G + + L ++ Sbjct: 2 SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVL----TAGQHYLADTLRAVV 57 Query: 67 ASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A ++ + L H+ L A L+ + ++ + Q ++L V Sbjct: 58 KEAIDFTHGPRELQDLSVALVHMGLQALGLLCGIAAVALIAAFLALAPQTGLKISLKAVM 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P VS G +RI+S+N+ ++ +K VK ++ ++ ++ + + + + Sbjct: 118 PKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVPQL 177 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + + V+++ L + D + K +MSK E+K E K+S GNP +K Sbjct: 178 IAVLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKG 237 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + A ++R Sbjct: 238 ERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLDEQALRLR 297 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A +PI P +AR L K VP+N IP ++ VA ++ + Sbjct: 298 QQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341 >gi|167841178|ref|ZP_02467862.1| secretion system apparatus protein SsaU [Burkholderia thailandensis MSMB43] Length = 359 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 3/344 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK DA +G S E + + + L Y LF P + L AS Sbjct: 3 EKTEQPTAKKRADARRKGQVAKSVEITSGAQLAVLLGYFLFE-GPHLMQAFETLTR--AS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L L +R VI L+ + + + + Q P+L +KPS Sbjct: 60 IDVINDDLVTALGHWLGVLGAVVTRFVIGLALVVIGVTVIAVVAQIGPLLASEALKPSVD 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S+ +L F KS K+ ++ I + E ++ + + Sbjct: 120 KINPINNAKQMFSMKSLFEFAKSLFKVGVLSLIFYYLIREYAPSLQFLPLCSVECGFAVS 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + ++ F + D + + +L MS ++IK E K S GNP +K+++K Sbjct: 180 VRLLYWMWAALIGFYVLFGLADFAFQRYNTTKQLMMSIEDIKQEFKNSEGNPEMKHKRKE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I R + +++T+++ NPTH A+ L Y P +V G A + +A Sbjct: 240 IHREVQSGSLASNVAKSTVVVRNPTHVAVCLYYDPIAAPLPEVVETGHGKRALHIVALAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +P+ E +AR+L ++ + IPP ++ VA ++ + H Sbjct: 300 RAGVPVVENVPVARALAARLAVGQVIPPDLFEPVAHILRLVMHL 343 >gi|15611774|ref|NP_223425.1| flagellar biosynthesis protein FlhB [Helicobacter pylori J99] gi|12230110|sp|Q9ZL73|FLHB_HELPJ RecName: Full=Flagellar biosynthetic protein flhB gi|4155273|gb|AAD06292.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 358 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ +++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKILDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ ++ +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKSNVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|259417182|ref|ZP_05741101.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B] gi|259346088|gb|EEW57902.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B] Length = 363 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 158/341 (46%), Gaps = 2/341 (0%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 K+ P+ +K+ A EG+ P S + +S L LI + ++ + L ++ Sbjct: 10 KSFEPTPEKLRKARLEGDVPKSNDLLQAASYLGLLIAFYTAGGSSVEALGTVLMSMIDQP 69 Query: 70 TQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + +A V+ ++ + + Q+ V ++P Sbjct: 70 DRLAPVFFGDGIAAPVAGEFISAALTSVMAWFIVPAALVLLAVFAQKAMVFAPKRIEPKL 129 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 R+S+ + K + + L F KSF K++L + I L+ M+ + +P+S++ Sbjct: 130 SRLSVIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGIYLSWRLPEMIASVGTSPYSVVPF 189 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + LI+ L+ + ++D + ++ K MS++++ DE+K S G+P K ++K Sbjct: 190 LVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEGDPHTKGQRK 249 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R + ++ A A ++I NPTHYA+AL++ + AP VAKG + +A +R+IA Sbjct: 250 QKGREIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDGVAAMIREIA 309 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 E+ +P+ +P AR+L+ V + I Y VA I Sbjct: 310 QENGVPLHSDPPTARALYATVEVGDEIAEEHYAPVAAAIRF 350 >gi|260858250|ref|YP_003232141.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368] gi|17384638|emb|CAC81850.1| EscU protein [Escherichia coli] gi|257756899|dbj|BAI28401.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368] Length = 345 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 161/338 (47%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D +G+ S E L + + + V ++ + S Sbjct: 3 EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I+ + ++ L ++P L+ + + + + Q + + +KPS + Sbjct: 63 LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S++ +K I+S+ ++ +KS K++++ I +F N + L Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTLVVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F V + +L +V D + H+ K+KMSK E+K E K + GNP IK ++ Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++T+I+ NPTH A+ L Y E P+++ G++ A ++ K+A Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++IP+ E+ +LARSL+K + I F++ VAQLI Sbjct: 300 LYDIPVIEDITLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|308184555|ref|YP_003928688.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180] gi|308060475|gb|ADO02371.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180] Length = 358 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPLLIILMVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346 >gi|189911977|ref|YP_001963532.1| endoflagellar biosynthesis protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776653|gb|ABZ94954.1| Endoflagellar biosynthesis protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 444 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 177/352 (50%), Gaps = 5/352 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + +TE PS ++ + +GN P S E + +L L I + + Sbjct: 92 ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 151 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L+ +S L+ P L + ++F I ++Q + + + Sbjct: 152 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 211 Query: 126 SFKRVSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F R+S KR + + L N +KS K++L+G I I ++ ++ +L + Sbjct: 212 RFDRISP--NFKRVLPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGNMGMMQA 269 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + ++ K+++ L + + V D + ++ LK + E K E+K+ G+P++KN Sbjct: 270 ITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSGDPVMKN 329 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R+ +AR ++ M+ +A ++ITNPTHY++AL Y + AP ++AKG+N +A ++R Sbjct: 330 RRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENRLALEIR 389 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354 +IA E+++PI E P AR L+ QV + IP F++AV Q++ + + KK+ Sbjct: 390 RIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 441 >gi|34498461|ref|NP_902676.1| flagellar biosynthesis protein FlhB [Chromobacterium violaceum ATCC 12472] gi|34104316|gb|AAQ60675.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] Length = 379 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 166/353 (47%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+KTE + +++ A +G P S++ + + + ++F+ +PG Sbjct: 1 MAEA-RQDDKTEKATPQRLRKAREQGQVPRSKDLAAALGL-LLALKMMFWLAPGWLDDFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L ++ + + + L L +++ P ++ + + S L V L Sbjct: 59 QLFALAFASLSGQGALENSLSKLFGGTLLLLIKMLAPLAVIPLTMLLLS-LFPGGWVFVL 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N + P F+R++ + R+ S + KS K +++G ++ ++ S Sbjct: 118 NQISPKFERMNPLAHLSRLASPKHASEIGKSIAKALVLGWLLYRVASDALHDFFALHSMP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A + L+ + + D+ + + +MSKQEIK+E K + G P Sbjct: 178 LLPTLAGAADLLLSCLLKLAAVFLLFALADLPLQVFLFLKQQRMSKQEIKEEHKNTEGRP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ R + + + + + +A A +II NP+HYA+AL+Y + +AP +VAKG + +A Sbjct: 238 EVRQRIRQLQQQMAQRGVRKALPGADVIIVNPSHYAVALKYDENRAEAPFIVAKGVDEMA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R++A E + + P LAR+++ +N IP Y+AVAQ++ + K Sbjct: 298 LYIRQLAEEMKLTVLPLPPLARAVYHTTQVNQQIPAPLYRAVAQVLTYVLQLK 350 >gi|172064924|ref|YP_001815636.1| type III secretion exporter [Burkholderia ambifaria MC40-6] gi|171997166|gb|ACB68083.1| type III secretion exporter [Burkholderia ambifaria MC40-6] Length = 352 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 164/345 (47%), Gaps = 7/345 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++ EG S + +S+ + ++ L + G + + L ++ Sbjct: 2 SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVL----TAGQHYLADTLRAVV 57 Query: 67 ASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A ++ + L H+ L A L+ + ++ + Q ++L V Sbjct: 58 KEAIDFTHGPRELQDLSVALVHMGLQALGLLCGIAAVALVAAFLALAPQTGLKISLKAVM 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P VS G +RI+S+N+ ++ +K VK ++ ++ ++ + + + + Sbjct: 118 PKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVPQL 177 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + + V+++ L + D + K +MSK E+K E K+S GNP +K Sbjct: 178 IAVLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKG 237 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + A ++R Sbjct: 238 ERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLDEQALRLR 297 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A +PI P +AR L K VP+N IP ++ VA ++ + Sbjct: 298 QQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341 >gi|210134972|ref|YP_002301411.1| flagellar biosynthesis protein FlhB [Helicobacter pylori P12] gi|210132940|gb|ACJ07931.1| flagellar biosynthetic protein [Helicobacter pylori P12] Length = 358 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALALISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L+K V +N+AIP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYKDVKLNAAIPEELFEAVAIVFAQVAKLE 346 >gi|89069813|ref|ZP_01157148.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus HTCC2516] gi|89044614|gb|EAR50730.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus HTCC2516] Length = 359 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 2/354 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS +D +K+ P+ KK++DA +G+ P S + + ++ L+ L + + S Sbjct: 1 MS-HDDGADKSFEPTQKKLDDARRKGDLPRSADLTTAAAYAGFLLAALALGGGVVDGMGS 59 Query: 61 DLHVLLASATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L L+ A E + + L+A+ + P LL + + + QR V Sbjct: 60 LLRALVERADALSAEMFAGGAAPRSGAVILAAAGALAPILLGPAAAALVAVIAQRGLVFA 119 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + + P R+S K+ + L F KSF K+ + + + L+ ++ I Sbjct: 120 PSKLAPKLSRISPLSTAKQKFGRTGLFEFAKSFAKLTIYSITLGLFLSARLPDIVGTIGM 179 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P I + +L++++L A + LD+ + K +MS++E+ DE+KQS G+ Sbjct: 180 APAIIAGELLRLMLDLLLVVVLIAAAIGALDLLFQRADHLRKNRMSRKEVTDEMKQSEGD 239 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K +++ A + +MM A ++I NPTHYA+AL++ + APV VAKG + I Sbjct: 240 PAMKQQRRQKAVAIATTQMMADVPTADVVIVNPTHYAVALKWDRGSPGAPVCVAKGVDAI 299 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R++A EH IP+ +P AR+LF + I + I P Y+AVA I + Sbjct: 300 AARIRELALEHVIPLHSDPPTARALFAETEIGAEIHPDHYRAVAAAIRFAERLQ 353 >gi|115360600|ref|YP_777737.1| type III secretion system protein HrcU [Burkholderia ambifaria AMMD] gi|115285928|gb|ABI91403.1| type III secretion exporter [Burkholderia ambifaria AMMD] Length = 352 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 164/345 (47%), Gaps = 7/345 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++ EG S + +S+ + ++ L + G + + L ++ Sbjct: 2 SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVL----TAGQHYLADTLRAVV 57 Query: 67 ASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A ++ + L H+ + A L+ + ++ + Q ++L V Sbjct: 58 KEAIDFTHGPRELQDLSVALVHMGVQALGLLCGIAAVALVAAFLALAPQTGLKISLKAVM 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P VS G +RI+S+N+ ++ +K VK ++ ++ ++ + + + + Sbjct: 118 PKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDRSVPQL 177 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + + V+++ L + D + K +MSK E+K E K+S GNP +K Sbjct: 178 IAVLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKG 237 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +K +AR + SRA +++ NP HYA+ALRY TE PV++AKG + A ++R Sbjct: 238 ERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGVDEQALRLR 297 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A +PI P +AR L K VP+N IP ++ VA ++ + Sbjct: 298 QQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341 >gi|207724585|ref|YP_002254982.1| hrp protein hrcu [Ralstonia solanacearum MolK2] gi|206589807|emb|CAQ36768.1| hrp conserved protein hrcu [Ralstonia solanacearum MolK2] Length = 354 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 156/347 (44%), Gaps = 10/347 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLH 63 D KTE P+ KK+EDA +G S + + +L+ + L FF ++ Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLD--- 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LA + + L H++L + +P +F + + Q VL+ V Sbjct: 59 --LALDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPV 116 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + ++ G+KRI+S+ ++++ +K +K V + + ++ + Sbjct: 117 ELKMNAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMD 176 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I + ++L L D G + +MSK E+K E K S G+P IK Sbjct: 177 IAEIGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236 Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A Sbjct: 237 GERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPQEYGLPRIIAKGVDDEALA 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +R+ A IPI P LAR+L++ V + A+P ++ VA+++ + Sbjct: 297 LREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342 >gi|307637461|gb|ADN79911.1| Flagellar biosynthesis protein [Helicobacter pylori 908] gi|325996051|gb|ADZ51456.1| Flagellar biosynthesis protein [Helicobacter pylori 2018] gi|325997646|gb|ADZ49854.1| Flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 358 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSVFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|269303197|gb|ACZ33297.1| putative Yop translocation protein U [Chlamydophila pneumoniae LPCoLN] Length = 360 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 150/345 (43%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + + + L +L+ Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLS 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A R D +F L + + +P L + G+ + P + KP Sbjct: 62 QAPTR--HDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + E IK+ + I L+ +KS +KI I+ I+L +++ +P Sbjct: 120 KKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K + I +F + VLD+ + H + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKEIFYKAVTSIGIFFLIVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ IPI LA L + IP Y+A+ +++ I Sbjct: 300 EKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSL 344 >gi|15618242|ref|NP_224527.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15835857|ref|NP_300381.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752716|ref|NP_444983.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33241667|ref|NP_876608.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4376600|gb|AAD18471.1| Yop proteins translocation protein U [Chlamydophila pneumoniae CWL029] gi|6672052|dbj|BAA88663.1| Yop translocation protein U [Chlamydophila pneumoniae] gi|7189359|gb|AAF38277.1| type III secretion inner membrane protein SctU [Chlamydophila pneumoniae AR39] gi|8978696|dbj|BAA98532.1| Yop translocation protein U [Chlamydophila pneumoniae J138] gi|33236176|gb|AAP98265.1| YopU [Chlamydophila pneumoniae TW-183] Length = 360 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 150/345 (43%), Gaps = 2/345 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + K++ DA +G S++ + + + + + L +L+ Sbjct: 2 GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLS 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 A R D +F L + + +P L + G+ + P + KP Sbjct: 62 QAPTR--HDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + E IK+ + I L+ +KS +KI I+ I+L +++ +P Sbjct: 120 KKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 K + I +F + +LD+ + H + +LKM K E+K E K + GNP IK R++ Sbjct: 180 FKEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 IA+ A+ +++NP A+A+ Y+ + AP ++A G NL AK++ A Sbjct: 240 QIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEA 299 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++ IPI LA L + IP Y+A+ +++ I Sbjct: 300 EKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSL 344 >gi|76574808|gb|ABA47282.1| HrcU [Pseudomonas cichorii] Length = 361 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 157/342 (45%), Gaps = 9/342 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A + +L G+ + + + + Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDIPKLFIFAALIEMILAMVDSGMERLKELMVLPIME 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + ++T L ++P L + + + +Q P+ +K F+ Sbjct: 63 LDRPF---GAALGEVMTKAGLELLLFMLPVLGVAAIMRLAGGWVQFGPLFATEALKLDFE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ ++++S L N S K +++ ++ L + ++ + S Sbjct: 120 RLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R++ + L + L ++D + + +MS ++I+ E K+S G+P +K+ +KS Sbjct: 180 VDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRKS 239 Query: 249 IARSRIRHKMMEA-----TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +AR + A A +++ NPTH+A+AL Y + P ++ KG++ A+++ Sbjct: 240 LAREISQQPGSAAPAKAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADAREL 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + A + +P+ LAR+L+++ + IP +AVAQ+ Sbjct: 300 IERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340 >gi|328948397|ref|YP_004365734.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM 2489] gi|328448721|gb|AEB14437.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM 2489] Length = 365 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 9/349 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + KTE S +K+ A EG S+E + L + L+ + + Sbjct: 9 EDEGKTEEASEQKLRKARKEGRIAKSQELNGTVVFLFVVAVLILLAPWFYKKICEMMIFY 68 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124 + T +K++D L +L +V+P L ++ G+ L+Q + ++ Sbjct: 69 FNNVTAQKIDDARFYYIFLRNL----LPIVLPLSLAGILAGVIINLVQNRGFIFTTKTIE 124 Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SAN 180 P F ++ + G K ++S+ L N KS +K+ ++ + + + + L F+ + Sbjct: 125 PKFSKIVPKFGEYFKKTLFSMMGLFNIAKSVLKVAIIVAVAVLLIRLDLAKTLGFLKAGG 184 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L V ++L++ + + + V D ++ ++KM+KQE+K+E K+S G+P Sbjct: 185 IDLALRSVSGMVAQLLVVSAVILIVIGVFDYVMQRREFKEQMKMTKQEVKEEFKESEGDP 244 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R +S + + M +A + ++ITNPTHYA++L++ Q + DAP++ AKG + A Sbjct: 245 EVKGRLESAQKEMLSQNMPKAVRESDVVITNPTHYAVSLQWKQEQQDAPMITAKGTDNTA 304 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + M+KIA E+++PI E LAR L+ + IP + +A+A + ++ Sbjct: 305 QTMKKIAAENDVPIIENRPLARGLYADTEVGDIIPTSYLRAIAAVYAQV 353 >gi|269138239|ref|YP_003294939.1| type III secretion apparatus protein [Edwardsiella tarda EIB202] gi|61743012|gb|AAX55232.1| EsaU [Edwardsiella tarda] gi|267983899|gb|ACY83728.1| type III secretion apparatus protein [Edwardsiella tarda EIB202] gi|304558282|gb|ADM40946.1| EsaU [Edwardsiella tarda FL6-60] Length = 352 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 152/338 (44%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++K++ DA EG S++ S + L++++ ++ + LA+ Sbjct: 3 EKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATLAT 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L I L + R V L + I + L++ + + PS + Sbjct: 63 L---NLPLPDAIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K++ S+ L K +KI+++G T + + + A+ + L+ Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLWVT 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++LL A V+D Y +L MS ++IK E K + G+P IK R++ Sbjct: 180 SKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R + ++ S A++++ NPTH A+ LRY + E P +V G+ A+ + +A Sbjct: 240 LHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IP+ E LAR+L +P + AVAQL+ Sbjct: 300 ARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337 >gi|83747856|ref|ZP_00944889.1| HrcU [Ralstonia solanacearum UW551] gi|207739220|ref|YP_002257613.1| hrp protein hrcu [Ralstonia solanacearum IPO1609] gi|83725503|gb|EAP72648.1| HrcU [Ralstonia solanacearum UW551] gi|206592593|emb|CAQ59499.1| hrp conserved protein hrcu [Ralstonia solanacearum IPO1609] Length = 354 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 157/347 (45%), Gaps = 10/347 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLH 63 D KTE P+ KK+EDA +G S + + +L+ + L FF ++ Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLD--- 58 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LA + + L H++L + +P +F + + Q VL+ V Sbjct: 59 --LALDVDSSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPV 116 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 + ++ G+KRI+S++++++ +K +K V + + ++ + Sbjct: 117 ELKMNAINPASGLKRIFSMSSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMD 176 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I + ++L L D G + +MSK E+K E K S G+P IK Sbjct: 177 IAEIGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236 Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 +K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A Sbjct: 237 GERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALA 296 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +R+ A IPI P LAR+L++ V + A+P ++ VA+++ + Sbjct: 297 LREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342 >gi|15645389|ref|NP_207563.1| flagellar biosynthesis protein FlhB [Helicobacter pylori 26695] gi|3023763|sp|P56416|FLHB_HELPY RecName: Full=Flagellar biosynthetic protein flhB gi|2313898|gb|AAD07819.1| flagellar biosynthetic protein (flhB) [Helicobacter pylori 26695] Length = 358 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKNKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346 >gi|15723910|gb|AAL06357.1|AF311901_9 EscU [Citrobacter rodentium] Length = 345 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D +G+ S E L + + + V ++ + S Sbjct: 3 EKTEKPTPKKIRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFIEVAGVVNTTINS 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L I I L + V+P +L + + + + Q + + +KPS + Sbjct: 63 LNEPFLYSIHEI---LGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKIKPSAQ 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++S++ +K I+S+ ++ +KS K++++ I ++F N + L Sbjct: 120 KISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQTLVII 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 F + + +L +V D + H+ K+KMSK E++ E K + GNP IK ++ Sbjct: 180 AFFIFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVEREAKDTDGNPEIKGERRR 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++T+I+ NPTH A+ L Y E P+++ ++ A ++ K+A Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAKALQIIKLAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +NIP+ E+ LARSL+K + I F++ VAQLI Sbjct: 300 LYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337 >gi|167770199|ref|ZP_02442252.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM 17241] gi|167667521|gb|EDS11651.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM 17241] Length = 291 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 150/277 (54%) Query: 77 ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 + I + +P LL+ + + + Q + + P F R++ +GI Sbjct: 10 MQEIRIYFMQGCIFFVLSALPLLLICGLVVVICTVAQTRGLFTMKAAAPKFGRMNPLQGI 69 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 K+++S+ +V +KS VKII++G II SL E +F M + + L + + Sbjct: 70 KKMFSLRGVVELLKSIVKIIILGYIIYNSLGEQFFFMPRLMDMSLEQALAFTGNIILDIA 129 Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 + + + D + + + L+MSKQE+K+E KQ+ G+P +K + K + + R Sbjct: 130 KTAAIVMVFVAGFDYLYQWWDFEKNLRMSKQELKEEFKQTEGDPQVKGKIKERQQQQARQ 189 Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316 +MM+ A ++I NPTHYA+A++Y +N+APV++AKG + +A ++ K+A EH+I E Sbjct: 190 RMMQNVPNADVVIRNPTHYAVAIQYNPHQNNAPVVIAKGMDSLALRIVKVAQEHDIITME 249 Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR L++ V ++ IP FY+ VA+++ +Y+ K Sbjct: 250 NKPLARGLYETVDLDREIPEQFYQPVAEVLAFVYNLK 286 >gi|183221908|ref|YP_001839904.1| flagellar biosynthetic protein FlhB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167780330|gb|ABZ98628.1| Flagellar biosynthetic protein FlhB; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 403 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 177/352 (50%), Gaps = 5/352 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + +TE PS ++ + +GN P S E + +L L I + + Sbjct: 51 ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 110 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + +L+ +S L+ P L + ++F I ++Q + + + Sbjct: 111 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 170 Query: 126 SFKRVSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F R+S KR + + L N +KS K++L+G I I ++ ++ +L + Sbjct: 171 RFDRISP--NFKRVLPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGNMGMMQA 228 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + ++ K+++ L + + V D + ++ LK + E K E+K+ G+P++KN Sbjct: 229 ITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSGDPVMKN 288 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R+ +AR ++ M+ +A ++ITNPTHY++AL Y + AP ++AKG+N +A ++R Sbjct: 289 RRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENRLALEIR 348 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354 +IA E+++PI E P AR L+ QV + IP F++AV Q++ + + KK+ Sbjct: 349 RIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 400 >gi|315452646|ref|YP_004072916.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179] gi|315131698|emb|CBY82326.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179] Length = 352 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 172/351 (49%), Gaps = 7/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKIE A EGN S E F ++A ++ FFS + S Sbjct: 1 MAE----EEKTELPSAKKIEKAREEGNVAKSLEVVGFLGLVAGFGGVMAFFSMWLDHFES 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L ++ L L + +++P L L + + ++Q + + Sbjct: 57 IFRQSLRWIALD--FTPHNLHLLSLQLLKDVAWVLLPFLFLMFVVAFLANVVQFGLLFSP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P F +++ G+K ++S+ L++ + K+ + + + ++ + Sbjct: 115 KAIVPKFSKINPINGLKNLFSLKKLLDGLLITAKVCIAFVLGFVVVSLFIGELAKIARVE 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ +L ++LD Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 IRDQALWFEHKALILIASLLFLFLVASLLDFLLKRRQYINSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + K + KMM A A +++TNPTHYA+ALR+ ++ APV+VAKG +A Sbjct: 235 EIKAKIKQLMLKNSMSKMMAAIPSANVVVTNPTHYAVALRFE-EKDVAPVVVAKGIEHLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++ IA EH I I E P LAR L+K+V ++ IP + ++AVA + ++ H Sbjct: 294 IRIKAIAREHEIEIIENPKLARELYKEVDVDEVIPKMLFEAVAIVFAQVAH 344 >gi|255022047|ref|ZP_05294053.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] gi|254968533|gb|EET26089.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC 51756] Length = 380 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 8/352 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + KTE S K+++DA +G P S++ + + A L + S Sbjct: 1 MSE---AEEKTEKASQKRLDDAKKDGKVPRSQDWTASLVLFAATALLWAASGSWGTEILS 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + V L+ ++ D + + + + + ++ I S L+ V + Sbjct: 58 RMVVGLSVSSLHFRADWQRTIL---QEAAPLFVVFLMFGGVILVSAIASILLVGGWVWSP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + R+S G+KR ++ + VK L+G + + + + Sbjct: 115 GKL-WEWDRLSWTSGLKRPFTKKGFSVLWEDSVKTGLLGVCMGLIVWGQKGVWFALLDIP 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + K + + +D + KMSKQ+IKDE K+ GNP Sbjct: 174 PRRAISLGAAILVKDFFIFASLLLVPGAIDWFLQRRFFLESQKMSKQDIKDEHKEVDGNP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+R + + R R +MM++ +A++++ NP HYA+ALRY P++ AKG + IA Sbjct: 234 LIKSRIRRLQRRIARMRMMKSVEKASVVLINPEHYAVALRYT-ESMTVPIVTAKGIDTIA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 K+R+IA H +PI E PS+ARSL+K I IP Y+AVA ++ I H Sbjct: 293 LKIREIAKIHGVPILEAPSMARSLYKVCDIGDLIPAGLYEAVAIVLAYIDHL 344 >gi|14719875|gb|AAK73239.1| SctU [Burkholderia pseudomallei] Length = 351 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 165/343 (48%), Gaps = 4/343 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + S S+ A ++ L+ ++ + ++ L Sbjct: 2 SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + + L A V+P L + + GIG ++Q ++L V P+ Sbjct: 62 AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K ++S + + +K VK ++V + ++ + + + +P + Sbjct: 120 LGALNPAEGLK-LFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + K L+++ + D+ + K+KM+K E+K E K G+P++K + Sbjct: 179 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K +AR + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+ Sbjct: 239 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 299 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 340 >gi|55981991|gb|AAV69421.1| EsaU [Edwardsiella tarda] Length = 352 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 3/338 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++K++ DA EG S++ S + L++++ ++ + LA+ Sbjct: 3 EKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATLAT 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L I L + R V L + I + L++ + + PS + Sbjct: 63 L---NLPLPDAIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K++ S+ L K +KI+++G T + + + A+ + L+ Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGPTFTYFIRGYAASFAQLVRADAEAGLWVT 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++LL A ++D Y +L MS ++IK E K + G+P IK R++ Sbjct: 180 SKMALWMWGILLLLTALFAIVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE 239 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R + ++ S A++++ NPTH A+ LRY + E P +V G+ A+ + +A Sbjct: 240 LHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE 299 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IP+ E LAR+L +P + AVAQL+ Sbjct: 300 ARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337 >gi|291519578|emb|CBK74799.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio fibrisolvens 16/4] Length = 239 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 133/234 (56%) Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + ++P + + G KRI+S +++VN + + KI LV I +S+ + Sbjct: 1 MKPLQPKLSKFNPINGFKRIFSKDSIVNLLMALAKIALVCYISYVSIRNQANNIFILYDI 60 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 S L F + V I I + L +D + ++ + +KM+KQE+KDE K + G+ Sbjct: 61 GLKSALSLIFTLICDVGIKISIVYIILGFIDYAYQKWKFTNDMKMTKQEVKDEYKNTEGD 120 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK RQK R +MM+ +A ++ITNPTH A+A+ Y T+++AP ++AKG++ + Sbjct: 121 PQIKGRQKQKMMESSRRRMMQNVPQADVVITNPTHIAVAILYDNTKDEAPRVIAKGEDYL 180 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+++ A + +PI E LAR+L+ V I+ IPP Y+AVA+++ +Y +K Sbjct: 181 ALKIKEAAKDSGVPIVENKPLARALYATVEIDEIIPPELYQAVAEILAVVYTQK 234 >gi|296531764|ref|ZP_06894586.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] gi|296267903|gb|EFH13708.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC 49957] Length = 370 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 1/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KT S +K++ A G+ P+SRE S F L+ L ++ Sbjct: 1 MAE-ETGQEKTLDASPRKLQQARERGDLPMSREGSSFGLYFITLLLLWLAGGLIGQRFSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L LL + + + + +++P L + + +L+Q VL Sbjct: 60 VLLPLLEQPEAFLELTEAGHRRAALAVVEALALVLLPVFALLLAGSLLPHLLQNNVVLAP 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +S+ G +R++ + L F K K V + + + Sbjct: 120 QRLEPKLSHLSIISGFRRLFGLKGLFEFAKGLTKAGAVAGACWLVAAPLLEGSPQLAALD 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + +L+ I L A + +LDI + ++ + +M+ QE+++E++ + G+P Sbjct: 180 AAAFGPLVLRALAGMLLAITLVAAGVAILDISFQRFEYARRQRMTHQEMREEMRATDGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K K + + +M+ AT+++TNPTHYA+ALRY + + APV VAKG + +A Sbjct: 240 HVKAALKKKRKQLSQRRMLADVPGATVVVTNPTHYAVALRYERGRDVAPVCVAKGVDRMA 299 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R +A + + E+ +LAR+L V + IPP ++AVA++I ++ ++ Sbjct: 300 LRIRDLARGAGVAVMEDRALARALHASVEVGQVIPPAHFEAVAKIIGIVWAQQ 352 >gi|254461227|ref|ZP_05074643.1| flagellar protein FlhB [Rhodobacterales bacterium HTCC2083] gi|206677816|gb|EDZ42303.1| flagellar protein FlhB [Rhodobacteraceae bacterium HTCC2083] Length = 383 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 172/360 (47%), Gaps = 12/360 (3%) Query: 1 MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E KTE P+ K+++ A +G P S+E +F+++ ++ + P + S+ Sbjct: 1 MAEGGSDGQEKTEEPTQKRLDKAKEDGQVPSSKELFVFTTLFIGML-IYVGLVPVLPSLV 59 Query: 60 SDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 + +L + + ++ L D ++ + + +P L++ + + + Sbjct: 60 QEWGMLFSFSGEKGLTDAIFGNLGASFRFMFWKSVVFALPMLVVVIATQAA---MSGLIN 116 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 + + R++ G+KR+ S+ LV +K+ K+ L+ + + ++L Sbjct: 117 WSNGALAFKASRINPLSGLKRMVSMKALVEMLKAIGKVTLLISASVMVFVSQIESLLVSN 176 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + + L ++I+ L + + + D+ + ++Q +LKM+ QE++DE KQ+ Sbjct: 177 ATHLTGGLSRMNDVFVLLIIVFLFVLGIMAMADVMYQHYQHNKQLKMTLQEVRDESKQTE 236 Query: 238 GNPIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 G+P +K + + + R++ R M+A AT IITNPTH+A+AL+Y AP ++ Sbjct: 237 GSPEVKAKIRRMQMTAGSRAKARKAAMDAVPTATAIITNPTHFAVALKYEVGTVGAPTIL 296 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A G+ A+++ + + IF LAR+LF + IP + AVA ++ IY Sbjct: 297 AMGRGHFAQEIISTGRDAGVTIFRNELLARALFFAGQVGEEIPAPLFSAVAGVLAFIYRL 356 >gi|298736474|ref|YP_003729000.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8] gi|298355664|emb|CBI66536.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8] Length = 358 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILMVVAFLFNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|182440974|dbj|BAG24099.1| HrcU [Pseudomonas cichorii] Length = 361 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 70/342 (20%), Positives = 155/342 (45%), Gaps = 9/342 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A + +L G+ + + + + Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDIPKLFIFAALIEMILAMVDSGMERLKKLIMLPMME 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + ++T L ++P L + + + +Q P+ +K F+ Sbjct: 63 LDRPF---GAALGEVMTKAGLELLLFMLPVLGVAAVMRLAGGWVQFGPLFATEALKLDFE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ ++++S L N S K +++ ++ L + ++ + S Sbjct: 120 RLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R++ + L + L ++D + + +MS ++I+ E K+S G+P +K+ +KS Sbjct: 180 VDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRKS 239 Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +A + A +++ NPTH+A+AL Y + P ++ KG++ A+++ Sbjct: 240 LAHEISQQPASAAPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADAREL 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + A + +P+ LAR+L+++ + IP +AVAQ+ Sbjct: 300 IERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340 >gi|323956511|gb|EGB52253.1| flagellar biosynthetic protein FlhB [Escherichia coli H263] Length = 263 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 138/231 (59%) Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P F +++ GIKR++S +K+ +K ILVG++ L ++ M+ ++ +P Sbjct: 1 MQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPI 60 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + +A V ++++L + + D+ + KL+MS+Q+I+DE KQS G+P + Sbjct: 61 TAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 120 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +VAKG L+A + Sbjct: 121 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALR 180 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ K Sbjct: 181 IREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 231 >gi|261837998|gb|ACX97764.1| flagellar biosynthesis and export protein [Helicobacter pylori 51] Length = 358 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L + ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILTILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|317407764|gb|EFV87691.1| hypothetical protein HMPREF0005_03212 [Achromobacter xylosoxidans C54] Length = 357 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 171/346 (49%), Gaps = 3/346 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE PS K++ D+ +G+ S++ + +LA Y L ++ ++L Sbjct: 6 SGEKTEPPSQKRLRDSRKKGDVAYSKDFTQTVLVLALFGYTLGNAGAIFEALGR---IIL 62 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + I +L L + +P L + + GI + +Q VL + PS Sbjct: 63 TPANFTSIPFGAAINTVLDILLQELIAISLPYLGIVIGIGIFADAMQVGLVLAFQKLLPS 122 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K++++ +K I+S NLV F+KS KI+ + ++T + + ++ + + Sbjct: 123 AKKINIMANLKNIFSKKNLVEFLKSTAKIVFLSVLVTQVIKDAMPELMKIPHSGLVGMGA 182 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 +R +++ I + ++V D+GW Q+ L MSK+E+K E K+ G+P IK+ + Sbjct: 183 AMGSMMRTLVVNIAVAYFVISVADLGWQRMQYRKGLMMSKEEVKQEYKEMEGDPHIKHAR 242 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K + + + ++ T +A++++TNPTH A+AL Y + + PV++AKG+ +A M K Sbjct: 243 KHLHQEMAMNDTVQNTRKASVVVTNPTHLAIALFYEEDKVPLPVVLAKGEGALAAAMVKA 302 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A E IP+ + LAR+L ++ IP A+L+ + Sbjct: 303 AREEGIPVMQNIPLARALMVHGSVDQYIPAELVVPTAELLRLLRQL 348 >gi|146305090|ref|YP_001185555.1| YscU/HrpY family type III secretion protein [Pseudomonas mendocina ymp] gi|145573291|gb|ABP82823.1| type III secretion protein, YscU/HrpY family [Pseudomonas mendocina ymp] Length = 359 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 152/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ S +L + + + + + + + Sbjct: 3 EKTEKATPKQLRDAREKGQIAQSQDVSKLLILLMVSEITWSLATESVQRLQHLMALAINA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q L + L+ +I + + M+ + Q + +K F Sbjct: 63 TGQPFLRIVGQ---LVDEAVTVLLGFLIFSVGVAMVMRLAGGWAQFGFLFAPKALKIDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +K+++S NL N + S +K ++G + + L T++ +++ + Sbjct: 120 KLNPFPQLKQMFSAQNLTNLLMSILKAAVIGITLYVLLWPELGTLILLANSDLDTYWQSL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L L + L +D G + KL+MSK ++K E KQS G+P++K +++ Sbjct: 180 MEVFRYILRCTLGLLLVLAAVDFGLQKYFHAKKLRMSKDDVKKEYKQSEGDPMVKGQRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A + A A +++ NPTHYA+AL Y + P++ KG++ A + Sbjct: 240 LAHELLNQPPSTAARPVEEADMLVVNPTHYAVALYYRPGKTPLPMIHCKGEDEDALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + LAR+L+K V IP +AVA + + Sbjct: 300 RAKKARIPVVQSVWLARTLYK-VNAGRHIPRPTLEAVAHIYQLVKQL 345 >gi|300693811|ref|YP_003749784.1| hypersensitivity response secretion protein hrcu, type III secretion exporter [Ralstonia solanacearum PSI07] gi|299075848|emb|CBJ35157.1| Hypersensitivity response secretion protein hrcU, Type III secretion exporter [Ralstonia solanacearum PSI07] Length = 357 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L Sbjct: 2 SDEKTEQPTDKKLEDAHKDGETAKSADLTAAAVLLSGCLLLALTASFFGERWRALLDLAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + R + + ++H +L + +P +F + + Q VL+ V+ Sbjct: 62 DVDSSR--HPVMTLKQTISHFALQLVLMTLPVGFVFALIAWIATWAQTGIVLSFKPVELK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ G+KRI+S+ ++++ +K +K V I + ++ + I Sbjct: 120 MSAINPASGLKRIFSLRSMIDLVKMVIKAAAVAAAIWKLILILMPAIVGAAYQSVLDIAE 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++L L D G + +MSK E+K E K S G+P IK + Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239 Query: 247 KSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K +AR K ++ + A ++ NPTHYA+A+RY+ E P ++AKG + A +R+ Sbjct: 240 KKLARELAEDAKPKQSVAGAQAVVVNPTHYAVAIRYVPEEYGLPRIIAKGVDDEALALRE 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A IPI P LAR+L++ V + +P ++ VA+++ + Sbjct: 300 EATALGIPIVGNPPLARALYR-VDLYGPVPEPLFETVAEVLAWV 342 >gi|94496754|ref|ZP_01303329.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58] gi|94423767|gb|EAT08793.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58] Length = 375 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 86/360 (23%), Positives = 170/360 (47%), Gaps = 14/360 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + +KTE P+ K++ DA +G+ S++ ++ + LLF +T Sbjct: 1 MAQKNDGGDKTEKPTPKRLRDARRKGDIAKSKDVGPALGMIMWFLLLLFAAGHAGAQITG 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L +AT + + + L L + + L + G+ + +Q ++ Sbjct: 61 LMRDTLGTATSMPFDAAAPV--LGWAALLVLVSVSLLILGPAALIGVIAEFVQVGALVTT 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KPS +++ EG+KR++S++NLV +K+ K L+ TI + L + + + A Sbjct: 119 EKLKPSLDKLNPIEGLKRMFSMDNLVELLKTVAKATLILTIAGVILWRSADGFVSLVQAA 178 Query: 181 PHSILYHAFFTVRKVLIMIL------------LFIATLTVLDIGWSYHQWYSKLKMSKQE 228 S + H V ++ ++ + D W+ H + KL+MS+++ Sbjct: 179 GWSPVDHHGDQVASAMLALIRSVSIQLFAWTCAIFLLVAAADRAWAQHSFIKKLRMSRRD 238 Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 IK E K + G+P+++ +++ + + A RA +++TNPTH A+AL Y + Sbjct: 239 IKQEHKDNEGDPMLRAQRRQLHEEWANQNAVAAAGRANVLLTNPTHLAIALDYDPEDCPV 298 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P++ AKG+ +A MR A +PI LAR ++ + + IP + A+A++I Sbjct: 299 PMVAAKGEGPLAAAMRAEAEREGVPIVRNIGLARGVWGESEVGGPIPRDRFDAIAEIILW 358 >gi|167615475|ref|ZP_02384110.1| type III secretion system protein [Burkholderia thailandensis Bt4] Length = 360 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 169/350 (48%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E KTE P+ +K++ A +G S++ + +++ A + L + ++ Sbjct: 1 MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L L+ SA ++P + ++ G+ S Q ++ L Sbjct: 56 AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F +S GIKRI+S+ +L+ +K VK I++ +I +T + ++ + Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASVYEA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + K+ ++ L +A D S + +M+K+E K E K+S G+P Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K + Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ + Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342 >gi|119953071|ref|YP_945280.1| flagellar biosynthesis protein FlhB [Borrelia turicatae 91E135] gi|119861842|gb|AAX17610.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135] Length = 373 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 83/349 (23%), Positives = 161/349 (46%), Gaps = 6/349 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +TE P+ +K + A EG S E ++ ++ F S Y + Sbjct: 21 SEDEGRTELPTEQKKQKAREEGQVLKSTEINMAVTLCILFAVFFFMLSYFAYELMDVFRW 80 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + I + F S VI LL+ + ++Q ++ + Sbjct: 81 QAGKLPEIMSISIYSLGFAYIR---SMLGYVIVFLLISFIVVFLINVVQVGFLITFKPIV 137 Query: 125 PSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P + RV+ + IK + S + N KS KI ++ I I L N + + Sbjct: 138 PKWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISFIYYIMLRSNIGKISRMFEYSL 197 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 + ++ ++ + +++LD + ++ LKM+K+E+K E K+ G+P+ Sbjct: 198 EDGISVILSLAYRICFFSVIVLMGISILDYLFQRTRYIENLKMTKEEVKQERKEMEGDPL 257 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +++R + R + + +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 LRSRMRERMREILNANLKVTVPQADVVITNPEHFAVAIKWDSNTMLAPRVLAKGQDEIAF 317 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++IA E+NIP+ E LAR L+ V +N IP +++ V++++ K+Y Sbjct: 318 VIKQIARENNIPVMENKPLARDLYANVDVNEEIPREYWEIVSKILVKVY 366 >gi|294828141|ref|NP_712789.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar Lai str. 56601] gi|293385988|gb|AAN49807.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar Lai str. 56601] Length = 646 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 164/345 (47%), Gaps = 2/345 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE S ++ + +GN P S E +LA +I + L Sbjct: 296 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKY 355 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + R + LL + S L+ P L + ++ I + Q + + Sbjct: 356 IHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSF 415 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F R+ K + + L N KS K+ L+ + I +++++F +L + Sbjct: 416 NFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAV 474 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + K+ +++ + + ++++D + +++ LKM+ E K E K+S G+ ++ R Sbjct: 475 ALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 534 Query: 246 QKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++ +AR + + M+ A ++ITNPTH+A+AL Y + AP+++AKG + A + Sbjct: 535 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLII 594 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +IA E+ +P E+ AR L+++V + + +P FY+A+A ++ ++ Sbjct: 595 RIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 639 >gi|89056679|ref|YP_512130.1| flagellar biosynthesis protein FlhB [Jannaschia sp. CCS1] gi|88866228|gb|ABD57105.1| flagellar biosynthetic protein FlhB [Jannaschia sp. CCS1] Length = 362 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 166/355 (46%), Gaps = 12/355 (3%) Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 MS++D +P +K + KK+EDA +G S++ + L+ + ++ Sbjct: 1 MSDDDTSPGDKPFDATPKKLEDARKKGEIVRSQDLNTAVMYAGFLLSGAILAPWLVQNLG 60 Query: 60 SDLHVLLASATQRKL------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 L A D I L L SA+ +++P LL + S L Q Sbjct: 61 QLTQTTLGQAEVIAPLMLGPGGDGPAIGLLSGSLIASAAIVLVPAGLLLI-----SLLAQ 115 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 R + + + P R+S K+ Y L F KS VK+ LV + I L T+ Sbjct: 116 RALLFTPSKLMPKLNRLSPISNAKQKYGSQGLFQFAKSAVKLALVSIFLAIYLWARAETI 175 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 L + +L L+++ + ++D W + Q + +M++QE+ DE Sbjct: 176 LASLYGTAGQLLELLGRLSLDFLMVVAGMTGIIGIIDWFWEWSQLQLRNRMTRQEVMDES 235 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K + G+P IK ++++ + ++M+ A +++ NPTHYA+AL++ + P+ VA Sbjct: 236 KSAEGDPHIKQQRRARGQGIAMNQMLGDVPNADVVVVNPTHYAVALKWDRAGGGVPICVA 295 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 KG + +A+++R+ A E +PIF +P AR+L + + +AI P Y+AVA I Sbjct: 296 KGVDDVARRIREAASEAAVPIFSDPPTARALHASIEVGAAIQPDQYRAVAAAIRF 350 >gi|45657253|ref|YP_001339.1| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600491|gb|AAS69976.1| flagellar protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 649 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 164/345 (47%), Gaps = 2/345 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE S ++ + +GN P S E +LA +I + L Sbjct: 299 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKY 358 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + R + LL + S L+ P L + ++ I + Q + + Sbjct: 359 IHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSF 418 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F R+ K + + L N KS K+ L+ + I +++++F +L + Sbjct: 419 NFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAV 477 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + K+ +++ + + ++++D + +++ LKM+ E K E K+S G+ ++ R Sbjct: 478 ALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 537 Query: 246 QKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++ +AR + + M+ A ++ITNPTH+A+AL Y + AP+++AKG + A + Sbjct: 538 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLII 597 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +IA E+ +P E+ AR L+++V + + +P FY+A+A ++ ++ Sbjct: 598 RIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 642 >gi|242280058|ref|YP_002992187.1| flagellar biosynthesis protein FlhB [Desulfovibrio salexigens DSM 2638] gi|242122952|gb|ACS80648.1| type III secretion exporter [Desulfovibrio salexigens DSM 2638] Length = 353 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 174/353 (49%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS++ + KTE + K+I+ A +G+ E +++A +I L Sbjct: 1 MSKDPS---KTEKATPKRIDKARKDGSVAKGEEMGKIMTLIAGVICLRAIMDMYYEQFYE 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L D + L S + +++P L +Q + Sbjct: 58 IFQWFFTKGIFIDL-DKQSVYQLFQWCSQKLALILLPLFLFIAFIAFLVLRLQVGKLWTT 116 Query: 121 NHVKPSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 KP F ++ +L +G KR I+++ ++ +KS + I+VG I + L Sbjct: 117 KVFKPKFSKMFNLVQGFKRLIFNVKTIIRLVKSLLFAIIVGIAPYIIIKNEVGNFLPLFY 176 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 ++ H + + K++ +L + L + D+ + + + ++KM+K E+KDE KQ+ G Sbjct: 177 SSAHELAIYMLQIGYKMVTYTMLPMLVLALADLWYQRYNYQEEMKMTKDEVKDERKQAEG 236 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK +QK + ++ +MM A ++ITNPTHYA+AL+Y AP+++AKG N Sbjct: 237 DPKIKQQQKQKMMAILQQRMMAEVPNADVVITNPTHYAIALKYDPMVAPAPLVLAKGMNK 296 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +A++++++A E+ +PI E LA++L+KQV I IP YKAVA ++ K+ Sbjct: 297 VAERIKEVARENKVPIRENKPLAQALYKQVEIGDIIPEELYKAVAAILAKLNK 349 >gi|167577327|ref|ZP_02370201.1| type III secretion system protein [Burkholderia thailandensis TXDOH] Length = 360 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 168/350 (48%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E KTE P+ +K++ A +G S++ + +++ A + L + ++ Sbjct: 1 MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L L+ SA ++P + ++ G+ S Q ++ L Sbjct: 56 AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F +S GIKRI+S+ +L+ +K VK I++ +I +T + ++ Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASAYEA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + K+ ++ L +A D S + +M+K+E K E K+S G+P Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K + Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ + Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342 >gi|83717264|ref|YP_438947.1| type III secretion system protein HrcU [Burkholderia thailandensis E264] gi|257142051|ref|ZP_05590313.1| type III secretion system protein HrcU [Burkholderia thailandensis E264] gi|83651089|gb|ABC35153.1| type III secretion inner membrane protein [Burkholderia thailandensis E264] Length = 360 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 168/350 (48%), Gaps = 9/350 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E KTE P+ +K++ A +G S++ + +++ A + L + ++ Sbjct: 1 MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + + L L+ SA ++P + ++ G+ S Q ++ L Sbjct: 56 AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 V P F +S GIKRI+S +L+ +K VK I++ +I +T + ++ + Sbjct: 114 EPVMPKFDAISPMAGIKRIFSTKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASVYEA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + K+ ++ L +A D S + +M+K+E K E K+S G+P Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 K ++ +AR + +A +++ NPTHYA+A+RY E+ P ++ K + Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A +R+ A+ +PI PS+AR+L++ V ++AIP ++ VA ++ + Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342 >gi|58426834|gb|AAW75871.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae KACC10331] Length = 333 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 75/309 (24%), Positives = 153/309 (49%) Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104 ++ L + GI + S E+ + L L +++P + + + Sbjct: 1 MFALMALARGIGDGATAWMKTALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLA 60 Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 G+ L+ + + P +++ G+KR++ N+L +KS ++++ VG + Sbjct: 61 AGLAGPLLMSGLHFSGKAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASF 120 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 ++++ + +S + + + +L + L +D + W KLKM Sbjct: 121 CISKSLPGLRSLVSQPLEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKM 180 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +++EIK E+K+S G+P +K R + + + +MMEA +A +++ NPTHYA+AL+Y Sbjct: 181 TREEIKREMKESEGSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGG 240 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 + AP++VAKG + +A ++R+ +H + I P LAR+L+++ + IP Y VAQ Sbjct: 241 KMRAPIVVAKGVDEMAFRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQ 300 Query: 345 LIYKIYHKK 353 ++ +Y + Sbjct: 301 VLSYVYQLR 309 >gi|308062091|gb|ADO03979.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Cuz20] Length = 358 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA LI + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLISIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHAVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFILAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|256833222|ref|YP_003161949.1| type III secretion exporter [Jonesia denitrificans DSM 20603] gi|256686753|gb|ACV09646.1| type III secretion exporter [Jonesia denitrificans DSM 20603] Length = 380 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 179/353 (50%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ D +TE + K+++D +G+ S++ S ++ I A L F F + Sbjct: 1 MSD-DQSQERTEEATPKRMKDVRKDGSLQKSQDLSAWAGIGAGTAVLPFVFGNVEKHIED 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + +T D +V +L + P L + + I + + + Sbjct: 60 VLMNI---STIASTPDPLLVVPMLGDALAGILPALAPLLAVVFIAAILANGV-GGYYIAT 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+FK+ +L +G+K+ + + L +K+ +K +++G ++ + + + + Sbjct: 116 KKLKPTFKQFNLIKGMKQKFGMQALWQGVKALLKTVVIGAVLYLLIQGMIPVIQQSGALT 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++L +A +++ + L +LD+ + K KM+K+EIKDE K + G+P Sbjct: 176 MRAVLGYASEKFMQLMWTAVAAGIALAILDVVVVMKRNRKKTKMTKKEIKDENKNTEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K +S + R++M+ + + A +++ NPTH A+AL Y+ E AP LVAKG+NL+A Sbjct: 236 LLKGAIRSRQLAMSRNRMIASVADADVVVVNPTHVAVALTYVAGE-GAPKLVAKGKNLVA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++R+ A H++P+ + LAR+L I IPP + AVAQ++ + + Sbjct: 295 QRIREEAEAHDVPLVRDIPLARALNAHCEIGHPIPPALFTAVAQVLAFVMLLR 347 >gi|108563180|ref|YP_627496.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPAG1] gi|107836953|gb|ABF84822.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1] Length = 358 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L L++P L++ ++ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLVKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346 >gi|317182082|dbj|BAJ59866.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F57] Length = 358 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA LI + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EHNI I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHNIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|118581843|ref|YP_903093.1| flagellar biosynthesis protein FlhB [Pelobacter propionicus DSM 2379] gi|118504553|gb|ABL01036.1| type III secretion exporter [Pelobacter propionicus DSM 2379] Length = 324 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 165/322 (51%), Gaps = 4/322 (1%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + +++ +I L F S + S+ +L +L + ++ L+ L Sbjct: 2 MTSTFTLMVGMICLYVFGSFMMSSIERQSEEILEGVGSFELTE-GNVYLLVLKLFFLILV 60 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKS 151 ++ P ++ M+ I S++IQ V +++ G KR+++ LV +KS Sbjct: 61 VLAPLVVTVMLTSIASHVIQDGGRFEFQWQRVTFDITKLNPLNGFKRLFNKTALVEILKS 120 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 F+K++++G I L + + A+ IL + K+++ + +++LD+ Sbjct: 121 FLKLVVIGWIAYRVLKDEVQNIALLADADMVGILAYMGRVAFKIVVHTCGIMLIISILDL 180 Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 + + LKM+KQE+KDE K+ NP IK + K + + +M + A ++ITN Sbjct: 181 MYVKWNYLDGLKMTKQEVKDEHKEQE-NPEIKGQIKKMQYQAAKRRMTKIIPTADVVITN 239 Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTHYA+AL+Y + APV+VAKG +++A+ ++KIA E ++ + E LAR L+ QV N Sbjct: 240 PTHYAIALKYDRQRMIAPVVVAKGVDIMAQAIKKIAQESSVTLVENRFLARELYDQVEEN 299 Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353 AIP Y AVA+++ +Y K Sbjct: 300 EAIPETLYAAVAEVLAYVYRLK 321 >gi|116328495|ref|YP_798215.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331225|ref|YP_800943.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121239|gb|ABJ79282.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124914|gb|ABJ76185.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 510 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 165/345 (47%), Gaps = 2/345 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE S ++ + +GN P S E +LA +I + L Sbjct: 160 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILIYLMGEYFFMRTFYILRKY 219 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + QR + LL + S L+ P L + + + + Q + + Sbjct: 220 IHGVGQRTDISSESVTELLKNASTDLFTLLWPLLGITFVGAVIGNVAQVGFIFTPRALSF 279 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F R+ K + + L N KS K+ L+ + I +++++F++L + Sbjct: 280 NFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFSILISGEMGLEQAV 338 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + K+ +++ + + ++++D + +++ LKM+ E K E K+S G+ ++ R Sbjct: 339 ALVMSSSFKIFLVVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 398 Query: 246 QKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++ +AR + + M+ A ++ITNPTH+A+AL Y + AP+++AKG + A + Sbjct: 399 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLII 458 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +IA E+ +P E+ AR L+++V + + +P FY+A+A ++ ++ Sbjct: 459 RIARENGVPTVEDRIQARGLYEEVELGAEVPQQFYRAIATILSRL 503 >gi|51103002|gb|AAT96149.1| HrcU [Pseudomonas viridiflava] gi|51103057|gb|AAT96203.1| HrcU [Pseudomonas viridiflava] Length = 359 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 150/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMAVSEVTLGLADESVNRLQALLALSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L + H+ + +S + + L M+ + S +Q + +K Sbjct: 63 IDRSFLSAVEHLTSEGLSVLISFTLCSV---GLAMLMRLISSWVQVGFLFAPKALKIDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S N+ + S +K + + + + T++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNISTLLLSILKAVAIAATLYSQVKPALGTLIILANSDLVTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + + D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILRVILGLLLAIAMADFALQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LSHEILNQEPTAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEDALDLIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A IP+ + LAR+L++ V + IP +AV + + Sbjct: 300 RAKRAGIPVVQSIWLARTLYR-VQVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|251789490|ref|YP_003004211.1| YscU/HrpY family type III secretion protein [Dickeya zeae Ech1591] gi|247538111|gb|ACT06732.1| type III secretion protein, YscU/HrpY family [Dickeya zeae Ech1591] Length = 361 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 166/348 (47%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A L +L G+ + + + + L+ Sbjct: 3 EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + L+L A+ ++ + +M +G + IQ P+ + +K F Sbjct: 63 ISDPFGHAADEVFS--EALALLATFCLLTISVALLMRIVGGW-IQYGPLFAVEALKLDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ IK+++++ L + + + +K +G + + +T +++ + + Sbjct: 120 RLNPINQIKQMFTMRKLTDMLTNLLKATTIGLVFWLVVTPQLEWLVELAYGDLTAFWKGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ V L + L V D G + + + +MS ++I++E K S G+P +K +KS Sbjct: 180 ENVLKSVSRTTLSALLALGVFDFGLQKYYFLKQQRMSHEDIRNEYKNSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A+ + ++ A +++ NPTHYA+AL Y + P ++ KG++ A+ + Sbjct: 240 VAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDDHARALI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A++ +P+ LAR+L++ VP IP + VAQ+ YK+ + Sbjct: 300 ARAHQAGVPVIRFIWLARTLYR-VPEGHYIPRDTLQPVAQV-YKVLRQ 345 >gi|237799998|ref|ZP_04588459.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022853|gb|EGI02910.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae str. 1_6] Length = 359 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 150/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KT+ + K++ DA +G S++ +LA L + + + L + Sbjct: 3 EKTQKATPKQLRDAREKGQVGQSQDIGKLLVLLAVSEVTLSLADESVNRLQALLALSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + I + LS + + L M+ + S +Q + +K Sbjct: 63 IDRPFMSSVELIANEGFSVLLSFTLCSV---GLAMLMRLISSWMQIGFLFAPKALKIDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S N+ N + S +K + ++ + +++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNITNLLMSILKASAIAAVLYTQVKPELGSLVLLANSDLQTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + + D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 LELFRHILRVILGLLLVIAMADFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + A A +++ NPTHYA+AL Y E P++ KG++ A + + Sbjct: 240 LSHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDDEALALIE 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + LAR+L+K V IP VA + + Sbjct: 300 RAKKAGIPVVQNIWLARTLYK-VKPGKYIPRPTLLIVAHIYKVVRQL 345 >gi|94968667|ref|YP_590715.1| type III secretion exporter [Candidatus Koribacter versatilis Ellin345] gi|94550717|gb|ABF40641.1| type III secretion exporter [Candidatus Koribacter versatilis Ellin345] Length = 351 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 172/351 (49%), Gaps = 8/351 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ +KTE P+ ++ + A +G SRE +I+ L+++L S +++ Sbjct: 1 MADS----SKTEQPTQQRRKKAREKGQVARSRELPGALTIIVVLVWILSLNSVALFTWRG 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LL A L++++ LL A++ + +L S L+Q V + Sbjct: 57 FYRSLLQQA---ALQELTLSPALLQKTIWVAAQWTVVPMLGAFAIATASTLLQGGFVFSS 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +R+S +K+I+S L N +KS + + + + + T + Sbjct: 114 EALAWKPERLSPGHRLKQIFSAAGLSNTLKSLLPFAAILWLAVSQIRSEWVTFIRLGGLP 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 I ++ L + + LD + LKMS++EIK E K+S GNP Sbjct: 174 VARIGSWLLAQCVALVWKCCLVLLLWSALDYLLQRQRLEGDLKMSREEIKQEFKESEGNP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + R R +M+ A AT+++TNPTHYALAL Y APVLVAKG + +A Sbjct: 234 QVKAKIRRMQRQVRRQQMLHAVKAATVVVTNPTHYALALEYRPDFA-APVLVAKGLDRLA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++++++A H IP+ E +LA +L++ V + AIP + AVA+++ +Y Sbjct: 293 EEIKQVAIWHEIPLVENRALAHALYRSVEVGQAIPSKLFTAVAEVLAAVYR 343 >gi|331005442|ref|ZP_08328821.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] gi|330420718|gb|EGG95005.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium IMCC1989] Length = 361 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 186/350 (53%), Gaps = 3/350 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + +TE P+ K+++A + G S E + + L+ +++L + I + Sbjct: 1 MSEEQS-QERTEKPTPFKLKEARDRGQVSKSTELNSLFA-LSSVLFLSYLVGEQIVNSQL 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + S + L + + P + L + I S L+Q P+L+ Sbjct: 59 LLSKKLLTYDFHTIGSTSGALLLFEQIKDGLINIYWPLIFLIIFISIVSNLVQTGPILSF 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +R++ +G K+I+S + F+K+ +K+IL T+ I++ E +L+ I Sbjct: 119 FPLKPDTQRLNPIKGFKKIFSKRMIYEFIKTTIKLILFATVAYITIDELLIVLLNLIDIQ 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P S + + I +LL + ++D ++ ++ +++MS ++IKDE+K+ G+P Sbjct: 179 PESYPLKLVTFAQSLGIKMLLVVLLAALVDFAYTRWEFIQQMQMSHKDIKDEVKKREGDP 238 Query: 241 IIKNRQKSIARSRIR-HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 +I+++++ + + + K + A ++ITNPTH A+AL++ Q E +P + AKG + Sbjct: 239 LIRSKRRELQKEAVEKSKSLSNVPDADVLITNPTHLAIALKFNQQEMTSPHVTAKGSGEL 298 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A++M+ +A +H + I E LARS++ + INSAI +Y+ +A++ + Sbjct: 299 AQQMKILARKHKVAIVENKPLARSMYNRTRINSAISEEWYQPIAKIYAWL 348 >gi|149926083|ref|ZP_01914346.1| Type III secretion component protein SctU [Limnobacter sp. MED105] gi|149825371|gb|EDM84582.1| Type III secretion component protein SctU [Limnobacter sp. MED105] Length = 353 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 157/346 (45%), Gaps = 4/346 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P+ KK++DA +G +S++A + +L ++ + + L +++ Sbjct: 2 SGEKTEKPTQKKLDDARKKGQVSVSKDAQILFKLLMFYMFFFWLSQDYAARFSELLDLIV 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + ++ I + L ++ + +P + + + Q +++ + PS Sbjct: 62 TAGLKQPWTFSESIFSMFFDLFVA---ITVPLVAVCAIAATLITWAQIGFLVSPEALTPS 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 FK+ IK ++S +LV + S VK++++ + + +N M+ A Sbjct: 119 FKKFDAVSNIKNMFSKKSLVQLLLSIVKVLILSVVGYLVFKDNMGDMIYSYRAGLTQFFD 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ ++ + L+ + V+D Y L+MS Q+I DE KQS GNP +K R Sbjct: 179 VLVHVLKAIIFVSLIIFMVIAVIDWSVEYMHHIKNLRMSHQDIADERKQSMGNPQLKQRM 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K RS + + + A I+ NPTH ++AL Y ++D P ++A G + A ++R+ Sbjct: 239 KREHRSILNSSL-TRVAGAKAIVANPTHISVALDYEPGKHDLPYILAMGTDDEALRIREF 297 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A ++ IPI LAR L++ + I + AQ+ + Sbjct: 298 AKKNGIPIIVNVKLARMLYQDCEEDEYIQREHLELAAQVFRAVMEM 343 >gi|217077044|ref|YP_002334760.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B] gi|217036897|gb|ACJ75419.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B] Length = 312 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 160/309 (51%) Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104 + F GI + I + +I + L M+ Sbjct: 1 MLGFAFLGRGIIIGLQSAVAFFSKLPSYDSLTIQDLGIYTIEAFKGVIIDLIIFVGLVMI 60 Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 GI + +Q ++ +K F +++ G+KR++S+ +L +KS +K+++VG + + Sbjct: 61 TGIITGSLQTKFLITFKSIKLDFSKINPISGLKRMFSLRSLFELLKSILKLVIVGYVGYL 120 Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224 + N+ +L + + ++LI + + +++ D +S +++ ++M Sbjct: 121 VVKSNWNKLLLATDTSVSEGALLIWDITFELLIKCGIALFIVSIADYFFSRYEYEKNIRM 180 Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284 +KQE+K+E K+ GNP IK +Q+ I H+MM+ AT+++TNPTH+A+A++Y Sbjct: 181 TKQEVKEEFKEVEGNPEIKRKQRQIMMQYSMHRMMQEVPEATVVVTNPTHFAVAIKYDSD 240 Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E D P++VAKG + +A+K+++IA ++N+PI P LAR L+ V I IP Y+AVA+ Sbjct: 241 EMDVPIVVAKGADKLAQKIKEIARKNNVPILRNPPLARELYFSVEIGDEIPQKLYRAVAE 300 Query: 345 LIYKIYHKK 353 ++ +Y K Sbjct: 301 VLAYVYTLK 309 >gi|50121004|ref|YP_050171.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560427|gb|AAS20387.1| HrcU [Pectobacterium atrosepticum] gi|49611530|emb|CAG74978.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 359 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 154/348 (44%), Gaps = 8/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+EDA +G S++ + L +L + + + + + L Sbjct: 3 EKTEQPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ A L + + ++ I +Q P+ +K Sbjct: 63 LGTPFAQVAKEV---FHDAAVLAGTLCLLSAAIAVLLRIAGGWLQYGPLFAPEALKLDLN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS Sbjct: 180 KALLTRITRTTLTALLVLSALDFGMQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + A +++ NPTHYA+ L Y + P ++ KG+N A+++ Sbjct: 240 LAHELANESAAPRPKPKLEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENKAAQELI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ L R+L++ P IP +AVAQ+ Y++ + Sbjct: 300 AQAKKAGIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346 >gi|51103122|gb|AAT96265.1| hrcU [Pseudomonas viridiflava] Length = 361 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 151/342 (44%), Gaps = 9/342 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A + +L G+ + + + + L Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + LT ++P L + + +Q P+ + +K F+ Sbjct: 63 LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S L N S K +++ ++ + L ++ + S Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + L + L LD + + +MS ++I+ E K+S G+P +K+ +K+ Sbjct: 180 VELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239 Query: 249 IARSRIRHKMMEA-----TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +AR A A +++ NPTH+A+AL Y + P ++ KG++ A+++ Sbjct: 240 LAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEAREL 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + A E +P+ LAR+L+++ + IP +AVAQ+ Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340 >gi|224531929|ref|ZP_03672561.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116] gi|224511394|gb|EEF81800.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116] Length = 372 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + +L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSAEINTAVGLLLLSALFFFMLSYFALDLVAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + I + F + L + ++Q + ++P Sbjct: 81 ASKLPEVMKMSIYAMGFAYIRSIMGYVVL---FFFASLAVNFFVNIVQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S N KS +K++++ I + N + Sbjct: 138 KWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIFYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 + + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 TGISIVLVLAYKICFFSVIFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ +A Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEMALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|227114165|ref|ZP_03827821.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 359 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 155/348 (44%), Gaps = 8/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+EDA +G S++ + L +L + + + + + L Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICIGLLECVLTLADSTMGKLQTLVQLPLQR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ A L + + ++ + +Q P+ + Sbjct: 63 LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALNLDLN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+ L Y + P ++ KG++ A+++ Sbjct: 240 LAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGEDSAARELI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + +IP+ L R+L++ P IP +AVAQ+ Y++ + Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346 >gi|289810262|ref|ZP_06540891.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 247 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 69/215 (32%), Positives = 125/215 (58%) Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++S +K+ +K LVG + L ++ M+ ++ +P + +A V ++ Sbjct: 1 MFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALL 60 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 ++L + + D+ + KL+MS+Q+I+DE K+S G+P +K + + + R+ + +M Sbjct: 61 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRM 120 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 ME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA ++R+I EH +P E P Sbjct: 121 MEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAP 180 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L++ I IP Y AVA+++ ++ K Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215 >gi|298346009|ref|YP_003718696.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC 43063] gi|315657498|ref|ZP_07910380.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236070|gb|ADI67202.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC 43063] gi|315491970|gb|EFU81579.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 367 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 186/354 (52%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ KTE + +K++ EG S++ + + S+ A L + Sbjct: 1 MSD---SGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119 + + T K+ S +V L + ++P +L ++ + +IQ V + Sbjct: 58 Q---TITAVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPS 114 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 H+KP + ++L +GIK++ + L N +K+ +K + VG ++ + ++ M Sbjct: 115 AKHLKPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHI 174 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + +++ + + ++ ++ ++VLD + + + + KMSKQEIK+E KQ G+ Sbjct: 175 SLWNLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGD 234 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + + Sbjct: 235 PMIKSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHV 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ + K Sbjct: 294 AARIREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347 >gi|51103164|gb|AAT96306.1| HrcU [Pseudomonas viridiflava] Length = 361 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 150/342 (43%), Gaps = 9/342 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A + +L G+ + + + + L Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + LT ++P L + + +Q P+ + +K F+ Sbjct: 63 LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S L N S K +++ ++ + L ++ + S Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + L + L LD + + +MS ++I+ E K+S G+P +K+ +K+ Sbjct: 180 VELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239 Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +AR A +++ NPTH+A+AL Y + P ++ KG++ A+++ Sbjct: 240 LAREITDQPGSAVPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDAEAREL 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + A E +P+ LAR+L+++ + IP +AVAQ+ Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340 >gi|253688600|ref|YP_003017790.1| type III secretion protein, YscU/HrpY family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755178|gb|ACT13254.1| type III secretion protein, YscU/HrpY family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 359 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 156/348 (44%), Gaps = 8/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+EDA +G S++ + L +L + + + + + L Sbjct: 3 EKTEQPTDKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ A L + + ++ I IQ P+ +K Sbjct: 63 LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRIVGGWIQYGPLFAPEALKLDLN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+ L Y + P ++ KG++ A+++ Sbjct: 240 LAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGEDSAAQELI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + +IP+ L R+L++ P IP +AVAQ+ Y++ + Sbjct: 300 AQAKKADIPVIRFIWLTRTLYRTTPEGQYIPRETLQAVAQV-YRVLRQ 346 >gi|187918146|ref|YP_001883709.1| flagellar biosynthesis protein FlhB [Borrelia hermsii DAH] gi|119860994|gb|AAX16789.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH] Length = 373 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 83/350 (23%), Positives = 165/350 (47%), Gaps = 8/350 (2%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +TE P+ +K + A +G S E + ++ F S +L Sbjct: 21 SEDEGRTELPTEQKKQKAREDGQVLKSTEINSAVTLFILFAVFFFMLSY----FAQELMN 76 Query: 65 LLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + E +S ++ L+ + +I LL+ + +IQ ++ V Sbjct: 77 VFRWQAGKLPEIMSVSIYALSFSYIKPMFGYMIVFLLISFIVSFLINVIQVGFLITFKPV 136 Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P + RV+ + IK + S + N KS KI ++ I I L N + + Sbjct: 137 VPRWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISLIYYIMLKSNIGKISRMSEYS 196 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ ++ + +++LD + ++ LKM+K+E+K E K+ G+P Sbjct: 197 LEDGISVILSLAYRICFFSIIVLMGISILDYLFQRTRYIENLKMTKEEVKQERKEMEGDP 256 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++++R + R + + +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 257 LLRSRMRERMREILNTNLRVTVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIA 316 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++IA E+NIP+ E LAR L+ V +N IP +++ V++++ K+Y Sbjct: 317 FVIKQIARENNIPVMENKPLARELYANVDVNEEIPREYWEIVSKILVKVY 366 >gi|85059286|ref|YP_454988.1| secretion system apparatus protein SsaU [Sodalis glossinidius str. 'morsitans'] gi|84779806|dbj|BAE74583.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 354 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 149/343 (43%), Gaps = 3/343 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE P+ K+ D EG S E + + A L++ F I ++ + + ++ Sbjct: 2 GEKTEKPTEKRRRDRRKEGQVIKSNEITSGVQLAAILLFWHLFAEAVIERTSTLIVLSIS 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + L + LL + SA L + + +GS L+Q VL V Sbjct: 62 LINRPFLFAFNQ---LLHVVLSSAGLLFALFGGMLALATVGSVLLQIGFVLASKAVGIKG 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R++ +K+I+S+++LV KS K++++ I T N L Sbjct: 119 RRINPVSNLKQIFSLHSLVELCKSTGKVVVLTLIFAGLFYYYATTFQALPFCNSRCALPL 178 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 R + ++ F L VLD + H + +MSK+E+K E K + G+P +K R+ Sbjct: 179 FTTFTRWMWFGLIGFYIVLGVLDYAFQAHNTLKQQRMSKEEVKQEYKDAEGDPYMKQRRH 238 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + + R+ ++I NPTH A+ L Y + P ++ KG A ++ +A Sbjct: 239 EMQHEIQSGSLAHNVKRSAVVIRNPTHIAICLGYHPIDMPVPRVLDKGTAERAGQIVDLA 298 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +P+ E LAR+LF+ V IP ++ VA L+ + Sbjct: 299 QRAAVPVVENIPLARALFQHVGCGDRIPETLFEPVAVLLRMVL 341 >gi|331664423|ref|ZP_08365329.1| surface presentation of antigens protein SpaS [Escherichia coli TA143] gi|331058354|gb|EGI30335.1| surface presentation of antigens protein SpaS [Escherichia coli TA143] Length = 370 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|227328488|ref|ZP_03832512.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 359 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 156/348 (44%), Gaps = 8/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+EDA +G S++ + L +L + + + + + L Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ A L + + ++ + +Q P+ +K Sbjct: 63 LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALKLDLN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ L + L+VLD G + + + +MS +++++E K S G+P +K +KS Sbjct: 180 KALLTRIARTTLTALLVLSVLDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+ L Y + P ++ KG+N A+ + Sbjct: 240 LAHELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENQAARDLI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + +IP+ L R+L++ P IP +AVAQ+ Y++ + Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346 >gi|304390233|ref|ZP_07372187.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326715|gb|EFL93959.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 367 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 186/354 (52%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ KTE + +K++ EG S++ + + S+ A L + Sbjct: 1 MSD---SGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119 + + T K+ S +V L + ++P +L ++ + +IQ V + Sbjct: 58 Q---TITAVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPS 114 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 H+KP + ++L +GIK++ + L N +K+ +K + VG ++ + ++ M Sbjct: 115 AKHLKPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHI 174 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + +++ + + ++ ++ ++VLD + + + + KMSKQEIK+E KQ G+ Sbjct: 175 SLWNLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGD 234 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + + Sbjct: 235 PMIKSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHV 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ + K Sbjct: 294 AARIREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347 >gi|111115097|ref|YP_709715.1| flagellar biosynthesis protein FlhB [Borrelia afzelii PKo] gi|110890371|gb|ABH01539.1| flagellar biosynthesis protein [Borrelia afzelii PKo] Length = 372 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFFFMLSYFALDLAAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + ++ + + F + L + +IQ + ++P Sbjct: 81 ASKLSEVMKMSVYAMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + + K +S N KS +K++++ I + N + Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ +A Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEMALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|224437175|ref|ZP_03658156.1| flagellar biosynthesis protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313143640|ref|ZP_07805833.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313128671|gb|EFR46288.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] Length = 377 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 177/347 (51%), Gaps = 5/347 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KT+APS+ KI A EGN S E + F +L L +F P + + + Sbjct: 2 ADEEKTQAPSTHKIAKAREEGNVSKSPELAGFFILLVGL-GAMFLLLPFWVEHSQKIFIH 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + S +++ D+ + L+ + L ++ P + M+ G+ + + Q +L+ +KP Sbjct: 61 INSLITQEV-DVRMLGDLMLSIGLEVFIMLAPLFVALMVTGVIANIAQFGLLLSPKAIKP 119 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ GIK + S+ L++ +K+ + + + + + + + Sbjct: 120 KLSKINPITGIKNVISLKKLLDGFMITLKVFVAFIVGFAVFVSFFNELSSVSMSGLYGQI 179 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ ++L+ + V D +Q+ LKMS +E+KDE KQ +P IK + Sbjct: 180 MWFRQKALILIGVLLILFFIMAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQSPEIKAK 239 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ---TENDAPVLVAKGQNLIAKK 302 + + + ++MM+ A+++ITNPTHYA+ALRY + + PV+VAKG + +A + Sbjct: 240 IRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYGEKEIEKGMPPVVVAKGIDELAIR 299 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 ++ +A E+ I I E P LAR L++Q+ +N AIP + AV Q++ ++ Sbjct: 300 IKGVAREYEIRIIENPPLARELYRQLDLNQAIPHDLFAAVGQVLQEV 346 >gi|163733157|ref|ZP_02140601.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149] gi|161393692|gb|EDQ18017.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149] Length = 362 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 161/349 (46%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ + +K+ +A +G S E +S L+ +L G+ + + Sbjct: 1 MSAPDDEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLVAILVSGESGLSHLGA 60 Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 L V++ + Q L + + ++P + + + + R V Sbjct: 61 TLAVIIGQSAQIAPLFFDGAGTVPARGIIQATGSALLPIFVYPALAVMLALFATRGIVFA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + V+P +VS+ K Y L F+ SF K+++ I+ I L M+ + Sbjct: 121 PSKVQPKLSKVSIISNAKNKYGRTGLFQFVLSFSKLMIYSAILAIFLYHRTSEMVAALHT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P + + LI +++ A + +D W + + K KMS++E+ DE K S G+ Sbjct: 181 TPQYTVILLAKICIEFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDETKNSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++ A+S ++ + A ++I NPTH+A+AL++ + APV VAKG + Sbjct: 241 PYMKQERRQRAQSLAGSQVAVEVAAADVVIVNPTHFAVALKWERAPGQAPVCVAKGVDET 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A ++R+IA E+ +PI +P AR+L + I P YKAVA I Sbjct: 301 ALRIREIAKENAVPIHSDPPTARALHSTTNVGDQIAPEHYKAVAAAIRF 349 >gi|284922800|emb|CBG35888.1| type III secretion system protein [Escherichia coli 042] Length = 370 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPMPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYTTHRRYDYV 320 >gi|323966652|gb|EGB62084.1| YscU/HrpY family protein type III secretion protein [Escherichia coli M863] gi|323978521|gb|EGB73603.1| YscU/HrpY family protein type III secretion protein [Escherichia coli TW10509] gi|327251613|gb|EGE63299.1| surface presentation of antigens protein spaS [Escherichia coli STEC_7v] Length = 370 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|300936205|ref|ZP_07151141.1| surface presentation of antigens protein SpaS [Escherichia coli MS 21-1] gi|300458662|gb|EFK22155.1| surface presentation of antigens protein SpaS [Escherichia coli MS 21-1] Length = 370 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + I+ I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|301027459|ref|ZP_07190796.1| surface presentation of antigens protein SpaS [Escherichia coli MS 69-1] gi|300394967|gb|EFJ78505.1| surface presentation of antigens protein SpaS [Escherichia coli MS 69-1] Length = 370 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + T + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWTNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|315654597|ref|ZP_07907503.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333] gi|315491061|gb|EFU80680.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333] Length = 367 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 186/354 (52%), Gaps = 8/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ KTE + +K++ EG S++ + + S+ A L + Sbjct: 1 MSD---SGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARR 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119 + + T K+ S +V L + ++P +L ++ + +IQ V + Sbjct: 58 Q---TITAVTLTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGKGVFPS 114 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 H+KP + ++L +GIK++ + L N +K+ +K + VG ++ + ++ M Sbjct: 115 AKHLKPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHI 174 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + +++ + + ++ ++ ++VLD + + + + KMSKQEIK+E KQ G+ Sbjct: 175 SLWNLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGD 234 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P+IK++++S A + R++M+ + A +++ NPTHYA+AL+Y + AP ++AKG + + Sbjct: 235 PMIKSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHV 293 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A ++R++A + IP E+ SLAR+L+ V + +AIP Y AVAQ++ + K Sbjct: 294 AARIREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347 >gi|307131233|ref|YP_003883249.1| type III secretion inner membrane protein [Dickeya dadantii 3937] gi|306528762|gb|ADM98692.1| type III secretion inner membrane protein [Dickeya dadantii 3937] Length = 359 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 162/348 (46%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A L +L G+ + + + + L+ Sbjct: 3 EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 T I L + L I LL + G IQ P+ + +K F Sbjct: 63 ITDPFGHAADEIFSEALSLLTTFCLLTISVALLMRLVG---GWIQYGPLFAVEALKIDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ IK+++++ L + + + +K + +G + + + +++ + + Sbjct: 120 RLNPINQIKQMFTMRKLTDMLTNILKAVTIGLVFWLVVMPQLEWLVELAYGDLTTFWKGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ V L + L VLD G + + + +MS ++I++E K S G+P +K +KS Sbjct: 180 ENVLKSVARTTLSALLALGVLDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A+ + ++ A +++ NPTHYA+AL Y + P ++ KG++ AK + Sbjct: 240 VAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDDQAKALI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A++ +P+ LAR+L++ +P IP + VAQ+ YK+ + Sbjct: 300 ARAHQAGVPVIRFIWLARTLYR-IPEGHYIPRDTLQPVAQV-YKVLRQ 345 >gi|331654348|ref|ZP_08355348.1| surface presentation of antigens protein SpaS [Escherichia coli M718] gi|331047730|gb|EGI19807.1| surface presentation of antigens protein SpaS [Escherichia coli M718] Length = 370 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|34500880|gb|AAQ73908.1| HrcU [Pectobacterium carotovorum subsp. carotovorum] Length = 359 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 72/348 (20%), Positives = 155/348 (44%), Gaps = 8/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+EDA +G S++ + L +L + + + + + L Sbjct: 3 EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + ++ A L + + ++ + +Q P+ +K Sbjct: 63 LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALKLDLN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ LV + + +K +++GT+ + +++ + H Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ L + L+ LD G + + + +MS +++++E K S G+P +K +KS Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+ L Y + P ++ KG+N A+ + Sbjct: 240 LAHELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENQAARDLI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + +IP+ L R+L++ P IP +AVAQ+ Y++ + Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346 >gi|216263954|ref|ZP_03435948.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1] gi|215979998|gb|EEC20820.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1] Length = 372 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFFFMLSYFALDLAAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + F + L + +IQ + ++P Sbjct: 81 ASKLPEVMKMSVYAMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + + K +S N KS +K++++ I + N + Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ +A Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEMALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|219684572|ref|ZP_03539515.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr] gi|219685776|ref|ZP_03540587.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04] gi|219671934|gb|EED28988.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr] gi|219672715|gb|EED29743.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04] Length = 372 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 160/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFSLFFFMLSYFALDLVAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + F + L + ++ +IQ + ++P Sbjct: 81 ASKLPEVMRMSVYSMGFAYIRAIIGYVVL---FFIAALVVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + + K +S N KS +K++++ I + N + + Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLN 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVVLSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|293416105|ref|ZP_06658745.1| type III secretion protein SctU [Escherichia coli B185] gi|291432294|gb|EFF05276.1| type III secretion protein SctU [Escherichia coli B185] Length = 370 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 149/326 (45%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGFGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 CHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|225551932|ref|ZP_03772872.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1] gi|225370930|gb|EEH00360.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1] Length = 372 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 158/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|225549000|ref|ZP_03769975.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a] gi|225370226|gb|EEG99664.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a] Length = 372 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 159/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L ++ +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLVVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S + N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|292487013|ref|YP_003529883.1| type III secretion protein HrcU [Erwinia amylovora CFBP1430] gi|292900602|ref|YP_003539971.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1181176|gb|AAB06008.1| HrcU [Erwinia amylovora] gi|291200450|emb|CBJ47579.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552430|emb|CBA19475.1| Type III secretion protein HrcU [Erwinia amylovora CFBP1430] Length = 360 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 162/348 (46%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q +S +V + + + + + + I IQ P+ ++P F Sbjct: 63 IGQPFELALSEVV---SSAIILVATFCGLTVAIAALLRIIGGWIQYGPLFAPEALQPDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ L + S VK + + TI + LT + ++ + S Sbjct: 120 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSRLAYGDLDSFWPAV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + + Sbjct: 180 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239 Query: 249 IARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+AL Y P ++ KG++ AK++ Sbjct: 240 LAHELLNQPATAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDQQAKELI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + NIP+ LAR+L++ IP +AVAQ+ Y++ + Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345 >gi|224534194|ref|ZP_03674772.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S] gi|224514296|gb|EEF84612.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S] Length = 372 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 160/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E ++ S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSNEINIAISLLLLFALFFFMLSYFALDLVAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + F S V+ + +IQ + ++P Sbjct: 81 ASKLPEVMKMSVYAMGFAYIR---SIVGYVVLFFFASLAVNFFINIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIESNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+NIP+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNIPLMENKLLARALYTNVKVNEEIPREYWEVVSKILVRVY 365 >gi|216264909|ref|ZP_03436901.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a] gi|221217819|ref|ZP_03589287.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a] gi|215981382|gb|EEC22189.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a] gi|221192496|gb|EEE18715.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a] Length = 372 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 158/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|224533751|ref|ZP_03674339.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a] gi|224513044|gb|EEF83407.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a] Length = 372 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 159/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S + N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|224533155|ref|ZP_03673755.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23] gi|224511882|gb|EEF82283.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23] Length = 372 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 159/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S + N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|32266517|ref|NP_860549.1| flagellar biosynthesis protein FlhB [Helicobacter hepaticus ATCC 51449] gi|32262568|gb|AAP77615.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC 51449] Length = 375 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 174/347 (50%), Gaps = 5/347 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A + KT+APS+ KI+ A EGN S E + F +L L L+F P + Sbjct: 2 ADEEKTQAPSAHKIQKAREEGNVSKSPELAGFFILLVGL-GLMFLLIPFWIECAQRIFHH 60 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + D + L+ + L ++ P L+ M+ G+ + + Q +L+ +KP Sbjct: 61 INKLIILDV-DRRLLGNLMLSIGLEVFFMLAPLFLVLMITGVIANIAQFGLLLSPKAIKP 119 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +++ GIK + S+ +++ +K+ + + + + + + + Sbjct: 120 KISKINPITGIKNVISLKKILDGFMITLKVFVAFIVGFAVFVSFFNELPSVSMSGLYGQI 179 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ ++L+ + V D +Q+ LKMS +E+KDE KQ +P +K + Sbjct: 180 MWFRQKALILIGVLLILFFIMAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQSPEVKAK 239 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE---NDAPVLVAKGQNLIAKK 302 + + + ++MM+ A+++ITNPTHYA+ALRY + E P+LVAKG + +A + Sbjct: 240 IRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYSEKEIAQGMPPILVAKGIDELAIR 299 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 ++ IA E++I I E P LAR L++Q+ +N IP + AV Q++ ++ Sbjct: 300 IKSIAREYDIKIIENPPLARELYRQLDLNQVIPHDLFAAVGQVLSEV 346 >gi|297621085|ref|YP_003709222.1| type III secretion inner membrane protein SctU [Waddlia chondrophila WSU 86-1044] gi|297376386|gb|ADI38216.1| type III secretion inner membrane protein SctU [Waddlia chondrophila WSU 86-1044] Length = 375 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 151/347 (43%), Gaps = 3/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK+ DA +G S++ + + + +L V + Sbjct: 2 GEKTEKATPKKLRDAKKKGQVAKSQDFPSAFTFVTSIALILGLSGFMFSKVGGFIESTFK 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + ++ + I + L+ VIP + + G+ + PV K Sbjct: 62 LVSHDEISVV--IPTMFREALLTIFSTVIPVMAAVALMGVVVNFLSVGPVWATEVFKFDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + +K + I LV +KS +KI + +I + ++ + + S L Sbjct: 120 KKFDPIQNLKSKFKIKTLVELIKSCLKIGIAAWLIYGVMYKSLPVLTQAATMPIESSLLI 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +V+I + +F + VLD + + + ++ M K E+K E K + G+P IK+++K Sbjct: 180 FKAFLMEVVIKVGIFFLVVAVLDFAYQKYNFGKEMMMEKFEVKQEYKNTEGDPQIKSKRK 239 Query: 248 SIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 A+ A +A +ITNP A+A+ Y + + AP ++ G+ ++A+++ Sbjct: 240 QTAQEIAYSDGPAAAVQKAAAVITNPVQLAIAVGYNREIDAAPYILVMGEGILAERIVHY 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + +PI LA L+ + I IP Y+A+A+++ I + Sbjct: 300 ANKSEVPIVRNIELAHKLWLEGEIFEYIPEDTYEAMAEILRWINSLE 346 >gi|218706359|ref|YP_002413878.1| surface presentation of antigens protein SpaS [Escherichia coli UMN026] gi|300898070|ref|ZP_07116438.1| surface presentation of antigens protein SpaS [Escherichia coli MS 198-1] gi|218433456|emb|CAR14358.1| Surface presentation of antigens protein [Escherichia coli UMN026] gi|300358208|gb|EFJ74078.1| surface presentation of antigens protein SpaS [Escherichia coli MS 198-1] Length = 370 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 76/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L +K F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ G+P IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGSPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|312171082|emb|CBX79341.1| Type III secretion protein HrcU [Erwinia amylovora ATCC BAA-2158] Length = 360 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 162/348 (46%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q +S +V + + + + + + I IQ P+ ++P F Sbjct: 63 IGQPFELALSEVV---SSAIILVATFCGLTVAIAALLRIIGGWIQYGPLFAPEALQPDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ L + S VK + + TI + LT + ++ + S Sbjct: 120 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSRLAYGDLDSFWPAV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + + Sbjct: 180 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239 Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+AL Y P ++ KG++ AK++ Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDQQAKELI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + NIP+ LAR+L++ IP +AVAQ+ Y++ + Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345 >gi|108764098|ref|YP_633783.1| FlhB/HrpN/YscU/SpaS family type III secretion protein [Myxococcus xanthus DK 1622] gi|108467978|gb|ABF93163.1| type III secretion protein, FlhB/HrpN/YscU/SpaS family [Myxococcus xanthus DK 1622] Length = 349 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 145/340 (42%), Gaps = 10/340 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE PS+K++ +A +G P SR + + L L G+ + Sbjct: 2 SGEKTEKPSAKRLREARRKGQIPRSRLLNASAVTAGGLFGLTAAAPVGMARL-------- 53 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A L + A+R P L + + +L HV+P Sbjct: 54 -QAWTEHLFLGQQDLGAWQEGLWIAARFCGPVLGGAFAAALLVSVATVGLEADLQHVEPK 112 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +R+SL G++R++S V K+ + + LVG ++ + E + L Sbjct: 113 LERISLVAGMQRLFSWRPWVELAKTLLIVCLVGALVWSDVEEAAPDAMKTAWLGGAEGLS 172 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A V + + + L V D ++ + L M+++E+K E K S G+P K ++ Sbjct: 173 LAVAHVSGLASRLACLLVVLGVGDYALAWRRHIKDLMMTREEMKREYKDSEGDPRHKGQR 232 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K++ R + +AT ++ NPTH A+ALRY E +AP LVAK + A+ MR+ Sbjct: 233 KALHRQLAQGGAARGVQKATAVVVNPTHIAVALRYDVDECEAPYLVAKAREGDARAMREQ 292 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 A I + + LARSL + IP Y+A A ++ Sbjct: 293 ARRLGIAVVRDIPLARSLIH-YDVGEPIPEELYQAAAVVL 331 >gi|322432982|ref|YP_004210231.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9] gi|321165209|gb|ADW70913.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9] Length = 367 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 176/351 (50%), Gaps = 8/351 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++++ KTE + K+ + A +G S+E +I + L + T+ Sbjct: 1 MADSN----KTEEATPKRRQKAREQGQVARSKELPSVLAIAGAIGALCMMSQSAVTHWTT 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L +A+ LE I+F S+ R +IP L+ + + + L Q + Sbjct: 57 FYRSMLDTASTSDLESNGPILF---WGSVEVFRWIIPVLMSATVLSVAAGLAQGGLSIAP 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++ F+R + + +I+S+ + N +KS + + I + N+ ++ S Sbjct: 114 EAMQLKFERFNPASKVGQIFSLAGVSNMLKSLLPFGAIAWIGEACIRSNWGMLIRASSFG 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ + +V L + +D ++ + LKMSK+EIK+E KQ+ GNP Sbjct: 174 LRQLVTTLGGMIFEVAWKSALVLVAWAGVDYLLTWKKMEGDLKMSKEEIKEEYKQNDGNP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +IK+R + + R + + + A + AT+I+TNPTHYA+ALRY E AP +V+KG NL+A Sbjct: 234 LIKSRIRRLQRRMRKKQALAAAATATVIVTNPTHYAVALRYTP-EMAAPEVVSKGMNLLA 292 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++++ + E+ I I E LA++L+K V + IP Y+AVA ++ ++ Sbjct: 293 QQIKALGAENGIMILENKPLAQALYKTVEVGEVIPSTLYQAVADILVIVFR 343 >gi|312148485|gb|ADQ31144.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi JD1] Length = 372 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S + N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|195941374|ref|ZP_03086756.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi 80a] gi|312149299|gb|ADQ29370.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi N40] Length = 372 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S + N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|27904722|ref|NP_777848.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395823|sp|Q89AN6|FLHB_BUCBP RecName: Full=Flagellar biosynthetic protein flhB gi|27904119|gb|AAO26953.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 382 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 83/350 (23%), Positives = 176/350 (50%), Gaps = 1/350 (0%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D + KTE+P+S +++ + G+ RE IL + ++ I ++ + Sbjct: 3 HDESEEKTESPTSYRLKISKETGHNRYYRELYSLL-ILTITLINFWYNQRLILTLLKRIF 61 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 L + ++ + + ++ + M+ + +I N + Sbjct: 62 YLSFTFNNSIFQNDLFLDHNFLMIFQDNLISLLGIIFFPMLIFMFPAMILCCSNFNFKFI 121 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 K +++ G K ++SI ++V+ K+ +KI+ V ++ + +++ + + + Sbjct: 122 KFDINKLNPILGFKNVFSIKSIVDLFKTVLKIVFVSIVVYLFISKYFLKVCFSSNFTFDY 181 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 IL ++ T+ + IL+F + ++D+ W + +Y L+M+++E+ DE+K GNP IK Sbjct: 182 ILNYSVRTIFLCFLTILIFFIPIIIIDLFWEKYNFYRSLRMTRKEVSDELKNMEGNPRIK 241 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +R + I S +M+ S++ +I+ NP HYA+A++Y +T AP ++AKG + +A K+ Sbjct: 242 SRIRQIMFSISNRRMLSNVSKSDVIVVNPMHYAIAIKYNETNMYAPKILAKGIDELAIKI 301 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +KI H+IP SLA L+ + + IP V Y+AVA+++ ++ + Sbjct: 302 KKIGNNHSIPTLVSHSLAHVLYYRTEVGEYIPSVLYEAVAEVLAWVWKIR 351 >gi|254253714|ref|ZP_04947031.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124898359|gb|EAY70202.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 403 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 163/345 (47%), Gaps = 7/345 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK++ EG S + +S+ + ++ L + G + + L ++ Sbjct: 53 SDEKTEEPTHKKLDKVREEGQVAKSADVVEVASLGSIVLVL----TAGQHYLADTLRAIV 108 Query: 67 ASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A ++ + +L H+ + A L+ + ++ I + Q ++L V Sbjct: 109 KEAVDFTHGARELQDLWTVLVHIGVQALGLLCGIAAVALVAAIVALAPQTGFKISLKAVM 168 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P VS G +RI+S+N+ ++ K K ++ ++ ++ + + + + Sbjct: 169 PKLASVSPGSGFQRIFSMNSAIDLAKMVGKAAILVAVMWQTIKSAMPVVASALDQSVPQL 228 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + + V+ + L + D + K +MSK E+K E K+S GNP +K Sbjct: 229 IGVLWSVLMHVVAVALGVFVVIGAFDYKLQKWLFIRKNRMSKDEVKREHKESEGNPELKG 288 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +K +AR + +RA +++ NP HYA+ALRY E PV++AKG + A ++R Sbjct: 289 ERKRMAREMSQEGPKGGVARANVVVVNPVHYAVALRYDPAEFPLPVVLAKGLDEQALRLR 348 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A ++PI P +AR L K VP+N IP ++ VA ++ + Sbjct: 349 QQAMHAHVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 392 >gi|225550105|ref|ZP_03771065.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a] gi|225369217|gb|EEG98670.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a] Length = 372 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|15594617|ref|NP_212406.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi B31] gi|218249479|ref|YP_002374795.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7] gi|223888974|ref|ZP_03623565.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b] gi|226321590|ref|ZP_03797116.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26] gi|3023773|sp|Q44760|FLHB_BORBU RecName: Full=Flagellar biosynthetic protein flhB gi|1165257|gb|AAA85596.1| FlhB [Borrelia burgdorferi] gi|2688194|gb|AAC66676.1| flagellar biosynthesis protein (flhB) [Borrelia burgdorferi B31] gi|218164667|gb|ACK74728.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7] gi|223885790|gb|EEF56889.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b] gi|226232779|gb|EEH31532.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26] Length = 372 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|330809227|ref|YP_004353689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377335|gb|AEA68685.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 357 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 172/350 (49%), Gaps = 5/350 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ +K+E + K+E+A +G P S + F +L L+ P + + Sbjct: 1 MSDQ---QDKSEEATPYKLEEARKKGQVPRSPDLLSFIMLLTFLMVFSAIAYPLASVIAA 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 H L +A Q + ++ + ++P + ++ I + L+ PV ++ Sbjct: 58 HTHWWLGNAGQLG-QGFGYLGEQGGYSLRQVVYGLLPLIGALVLMAILTNLLFSGPVFSM 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP FKR+ +G+K+++S V +K VK L ++ +L + + Sbjct: 117 TALKPDFKRLHPIQGLKKLFSRRMFVELIKVLVKGALFSLVLYYLFQSVLPQLLGMATIS 176 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + + ++ +L +A + DI +S ++ +++MS++E KDE ++ G+P Sbjct: 177 PLELPQAGKQLLMQLGFTVLAVMAAAALFDIWYSRREFGRQMRMSRRETKDEHRRREGDP 236 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 ++ ++K I ++ ++ + A +IITNPTHYA+AL+Y + AP ++A G+ L Sbjct: 237 EVRAKRKGIQQALLKKAAALGQVKDADVIITNPTHYAVALQYRPSSMLAPKVLAMGRGLH 296 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A+++ +A +H +PI P LAR+L ++SAIP VA++ + Sbjct: 297 ARRICHVARKHQVPILRRPPLARALHALARVDSAIPDSTQADVARIYRWV 346 >gi|261839413|gb|ACX99178.1| flagellar biosynthetic protein [Helicobacter pylori 52] Length = 358 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + I L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESIQKLFNQLAKDTFLLLLPILIILVVMAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALALISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|51598532|ref|YP_072720.1| flagellar biosynthesis protein FlhB [Borrelia garinii PBi] gi|51573103|gb|AAU07128.1| flagellar biosynthesis protein [Borrelia garinii PBi] Length = 372 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 160/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFSLFFFMLSYFALDLVAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + F + L + ++ +IQ + ++P Sbjct: 81 ASKLPEVMRMSVYSMGFAYIRAIIGYVVL---FFIASLVVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + + + K +S N KS +K++++ I + N + + Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLN 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + VLD + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVLDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++I NP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKDRMRVVLSTNLRVAIPQADVVIVNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365 >gi|310766415|gb|ADP11365.1| HrcU [Erwinia sp. Ejp617] Length = 365 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 167/348 (47%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 8 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 67 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q +S +V + L L A+ + + ++ IG + IQ P+ +KP F Sbjct: 68 IGQPFELALSEVVS--SALVLVATFCGLTVAIAALLRIIGGW-IQYGPLFAPEALKPDFN 124 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ L + S VK + + TI + LT + ++ + S Sbjct: 125 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLARLAYGDLDSFWPAV 184 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + + Sbjct: 185 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 244 Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + + A +++ NPTHYA+AL Y P ++ KG++ AK + Sbjct: 245 LAHELLNQPVAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 304 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + NIP+ LAR+L++ IP +AVAQ+ Y++ + Sbjct: 305 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 350 >gi|1216382|gb|AAB00549.1| FlhB' [Treponema pallidum] Length = 366 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 163/338 (48%), Gaps = 9/338 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + ++E P+ K+ A EG P S++ + +L L + L Sbjct: 23 EDEGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTSLFLLAPFILRECIGVLRFF 82 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124 AT +++ + + +L +P + ++ G+ + ++Q + ++ ++ Sbjct: 83 FTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSVKSIR 138 Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P FK++S KR +S L N +KS +KI + + ++ + F + + + Sbjct: 139 PQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLLGVSL 198 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +++ KVL+ + L + ++ D + Q+ LKMS+QE+K+E+K+ G+P+ Sbjct: 199 TQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQEGDPL 258 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +++ + + + T+ A ++ITNPTH+A+A++Y AP +VAKG + A Sbjct: 259 VRSYVR-KQMQSLVRESARNTTDADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSDGTAY 317 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 +++++A E I I E LAR+L+ QV I +P ++ Sbjct: 318 RIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYF 355 >gi|15639702|ref|NP_219152.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp. pallidum str. Nichols] gi|189025940|ref|YP_001933712.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp. pallidum SS14] gi|6225351|sp|O83710|FLHB_TREPA RecName: Full=Flagellar biosynthetic protein flhB gi|3323017|gb|AAC65681.1| flagellar biosynthetic protein (flhB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018515|gb|ACD71133.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum SS14] Length = 376 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 82/352 (23%), Positives = 169/352 (48%), Gaps = 9/352 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + ++E P+ K+ A EG P S++ + +L L + L Sbjct: 23 EDEGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTSLFLLAPFILRECIGVLRFF 82 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124 AT +++ + + +L +P + ++ G+ + ++Q + ++ ++ Sbjct: 83 FTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSVKSIR 138 Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P FK++S KR +S L N +KS +KI + + ++ + F + + + Sbjct: 139 PQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLLGVSL 198 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +++ KVL+ + L + ++ D + Q+ LKMS+QE+K+E+K+ G+P+ Sbjct: 199 TQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQEGDPL 258 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +++ + + + T+ A ++ITNPTH+A+A++Y AP +VAKG + A Sbjct: 259 VRSYVR-KQMQSLVRESARNTTDADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSDGTAY 317 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++++A E I I E LAR+L+ QV I +P ++ A+ + K+ K Sbjct: 318 RIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYFNALVLIFTKLDKFK 369 >gi|15803385|ref|NP_289418.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 EDL933] gi|15832975|ref|NP_311748.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. Sakai] gi|168747673|ref|ZP_02772695.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168753787|ref|ZP_02778794.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168759977|ref|ZP_02784984.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168766842|ref|ZP_02791849.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168775726|ref|ZP_02800733.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|168778863|ref|ZP_02803870.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|168799982|ref|ZP_02824989.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|195936469|ref|ZP_03081851.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. EC4024] gi|208806601|ref|ZP_03248938.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208813845|ref|ZP_03255174.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208818835|ref|ZP_03259155.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209399671|ref|YP_002272329.1| hypothetical protein ECH74115_4137 [Escherichia coli O157:H7 str. EC4115] gi|217327346|ref|ZP_03443429.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254794804|ref|YP_003079641.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. TW14359] gi|12517360|gb|AAG57977.1|AE005514_14 putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. EDL933] gi|13363193|dbj|BAB37144.1| type III secretion protein EprS [Escherichia coli O157:H7 str. Sakai] gi|187768810|gb|EDU32654.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188017892|gb|EDU56014.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189003231|gb|EDU72217.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189358704|gb|EDU77123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189363851|gb|EDU82270.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189369301|gb|EDU87717.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189377676|gb|EDU96092.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|208726402|gb|EDZ76003.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208735122|gb|EDZ83809.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208738958|gb|EDZ86640.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209161071|gb|ACI38504.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|217319713|gb|EEC28138.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254594204|gb|ACT73565.1| putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. TW14359] gi|320189195|gb|EFW63854.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. EC1212] gi|326339064|gb|EGD62879.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. 1044] gi|326343055|gb|EGD66823.1| surface presentation of antigens protein SpaS [Escherichia coli O157:H7 str. 1125] Length = 373 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|330812427|ref|YP_004356889.1| type III secretion protein, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|312597804|gb|ADQ89919.1| RscU [Pseudomonas fluorescens] gi|327380535|gb|AEA71885.1| putative type III secretion protein, putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 366 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 78/354 (22%), Positives = 166/354 (46%), Gaps = 10/354 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ KT+ + KKI DA N+G S++ S + A L + ++ Sbjct: 1 MSED--SGEKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGD 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + ++ + L H + + L ++ + + IQ + Sbjct: 59 MVTFPLH---RLDVDFVRAFEETLAHAGGVLLNFTLMTVGLAIVTRLVAGWIQFGFLFAP 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P R++ K+++S L+N VK + +GT+I + ++++ ++ + Sbjct: 116 EALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLINLVNGD 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +S R ++ + L + L +LD G + + +L+MS++E++ E K+ G+P Sbjct: 176 LNSYWRGLASLFRHIMHICLGVLLVLALLDFGLQKYFFAKRLRMSEEEVRKEFKEMEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 +K ++S+AR + + + A +++ NPTH+A+AL Y E P L+ KG + Sbjct: 236 HVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLIVKGVD 295 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A+ + + A +P+ + LAR+++++ + + IP +AVA + Y++ Sbjct: 296 AEARALIERAKVARVPVIQCIWLARTIYRE-DVGAYIPRETLQAVAHI-YRVLR 347 >gi|226320572|ref|ZP_03796132.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805] gi|226233991|gb|EEH32712.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805] Length = 372 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S + N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+ +++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVVIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|51103205|gb|AAT96346.1| HrcU [Pseudomonas viridiflava] Length = 361 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 151/342 (44%), Gaps = 9/342 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G S++ A + +L G+ + + + + L Sbjct: 3 EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + LT ++P L + + +Q P+ + +K F+ Sbjct: 63 LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S L N S K +++ ++ + L ++ + S Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + L + L LD + + +MS ++I+ E K+S G+P +K+ +K+ Sbjct: 180 VELFTHLSRTCLGLLLVLAALDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239 Query: 249 IARSRIRHKMMEA-----TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 +AR A A +++ NPTH+A+AL Y + P ++ KG++ A+++ Sbjct: 240 LAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEAREL 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + A E +P+ LAR+L+++ + IP +AVAQ+ Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340 >gi|149184191|ref|ZP_01862509.1| type III secretion exporter [Erythrobacter sp. SD-21] gi|148831511|gb|EDL49944.1| type III secretion exporter [Erythrobacter sp. SD-21] Length = 387 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 164/353 (46%), Gaps = 3/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D P K AP+ K++ DA +G+ S++A + +L +L P + + Sbjct: 1 MSE-DTPGEKNFAPTEKRLADAAKKGDVLRSKDAGTAAVMLFGGAWLA-LAGPWLLEGLT 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 DL L D S + LL L V + ++ + S L Sbjct: 59 DLARDAFLFDASDLRDFS-VQGLLIEGLLLGVPAVFALAVPVIVVTLFSQLAFGRGRWVT 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +++K +R++ G+KR++ + L+ K +KI L+G+I + ++ N Sbjct: 118 DNLKAKGQRINPMSGLKRMFGMQGLIEMGKGLLKIALLGSIAAAWWWNSMDVVIGLGRGN 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L A+ + ++ + + + +D+ + + +LKMS QE++DE K+S G+P Sbjct: 178 LSAQLTAAWRAIVSLVFALSAGLVVIAFVDLPIQWLRQQKRLKMSHQEMRDENKESEGSP 237 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ ++ R + A A +I NPTH+A+AL Y AP+L+AKG+ A Sbjct: 238 EMRAARRQRQRDIATGSVAGAMREAQFVIANPTHFAVALTYDPARASAPILLAKGRGDKA 297 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 M+++A E ++P E P LARS++ I Y AVA +I ++ K Sbjct: 298 LAMKELASELDLPTLEMPQLARSVYYTTRERQIICEDLYSAVASVIAYVFSLK 350 >gi|213416632|ref|ZP_03349776.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 338 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 142/329 (43%), Gaps = 3/329 (0%) Query: 23 LNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 EG S E + ++A +Y FF I + + L + ++ + Sbjct: 3 RKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSH 62 Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 L SA + G ++ +GS +Q V+ + + ++ K+I+S+ Sbjct: 63 ALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSL 119 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 +++V KS +K+I++ I T + ++ + + ++ F Sbjct: 120 HSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSSLIKWLWVGVMAF 179 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262 + +LD + Y++ LKMSK ++K E K G+P +K R++ + + ++ Sbjct: 180 YIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSV 239 Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322 ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LAR Sbjct: 240 KQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELAR 299 Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 SLF +V IP ++ VA L+ + Sbjct: 300 SLFFEVERGDKIPETLFEPVAALLRMVMK 328 >gi|17549085|ref|NP_522425.1| type III secretion system protein HrcU [Ralstonia solanacearum GMI1000] gi|547676|sp|P35652|HRCU_RALSO RecName: Full=Hypersensitivity response secretion protein hrcU gi|6066705|emb|CAB58251.1| HrpN protein [Ralstonia solanacearum] gi|17431336|emb|CAD18015.1| hrp conserved hrcu transmembrane protein [Ralstonia solanacearum GMI1000] gi|1097284|prf||2113360K hrpN gene Length = 357 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L Sbjct: 2 SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + R + + ++H +L + +P +F + + Q VL+ V+ Sbjct: 62 DVDSSR--HPLMTLKQTISHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ G+KRI+S+ ++++ +K +K + V + + +++ + I Sbjct: 120 MSAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLILILMPSIVGAAYQSVMDIAE 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++L L D G + +MSK E+K E K S G+P IK + Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239 Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+ Sbjct: 240 KKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A IPI P LARSL++ V + +P ++ VA+++ + Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVLAWV 342 >gi|46446384|ref|YP_007749.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400025|emb|CAF23474.1| putative type III secretion pathway protein sctU [Candidatus Protochlamydia amoebophila UWE25] Length = 357 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 166/347 (47%), Gaps = 3/347 (0%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 +KTE + KK++DA +G S++ + +A + +L S + + + L Sbjct: 2 GDKTEKATPKKLKDAKKKGQIAKSQDLPTAFTFIASVAIILALASSLYHQLANFLVGTFR 61 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 S +L + IV L + IP + L + G+ + PV K Sbjct: 62 SVNTPELSGV--IVNLFYKANEVIFLASIPTMALVALVGVTITFLTVGPVFAPEVFKFDI 119 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 K+ + + +K + + LV +KS +KI + +I + + ++ +S L Sbjct: 120 KKFNPVDNLKAKFKLKTLVELLKSVIKISIASYLIYKVMYNSIPVLIQTVSMPISGALIV 179 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + +V++ + LF + V D + + ++ M K E+K E K S G+P IK +++ Sbjct: 180 FHAFLVEVVLKVGLFFIVVAVADFIYQKKTFAKEMMMEKFEVKQEYKNSEGDPHIKGKRR 239 Query: 248 SIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 IA+ + RA ++TNPTH A+A+ Y + + AP ++A G++++A+++ KI Sbjct: 240 QIAQEIAYQEGPTGGVKRAQAVVTNPTHLAIAIGYERHMDAAPYILAMGKDVLAERIVKI 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +++IP+ +LA L++Q I +P Y+A+A+++ I K Sbjct: 300 AEKNDIPVLRNITLAHILWEQGEIYEYVPEDTYEALAEIMRWIASLK 346 >gi|149200776|ref|ZP_01877751.1| Flagellar protein FlhB [Roseovarius sp. TM1035] gi|149145109|gb|EDM33135.1| Flagellar protein FlhB [Roseovarius sp. TM1035] Length = 384 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 164/359 (45%), Gaps = 11/359 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF--FFSPGIYSV 58 M++ D KTE P+ K+ ++A EG S E + ++ + L + PG+ + Sbjct: 1 MADADDGQEKTEEPTQKRRQEAREEGRITTSTEVFVLVTLGMGALILSAGQWALPGLAGL 60 Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + +++ A I H ++ + + L +P L +M Sbjct: 61 WAT-GLVIDGAQSLDAMMIGHTRDMMLWMLAAGPGLGLPLLAAVLMAQSA----MGGLNF 115 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + ++++ G+ R+ S+ LV+ +K+ +K+ L+ + L + + Sbjct: 116 APKALGFKPEKMNPMTGLGRMVSMKALVDLLKAVLKVTLLLAAGVLMLYPLLPALGSSSA 175 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 P + + +VL +LL + + LD+GW H ++MS+Q+IKDE K+S G Sbjct: 176 LAPGDAMVLFGTAMLRVLGGLLLGLVVIAALDLGWQIHSNTKSMRMSRQDIKDESKESEG 235 Query: 239 NPIIKN--RQKSIA--RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 +P K R++ + R K + AT IITNPTH+A+ALRY + AP ++A Sbjct: 236 SPEQKGAMRRRQMQASRRASERKALADVPMATAIITNPTHFAIALRYEPGTDTAPRILAM 295 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G+ +A+ + + + + P LAR+L+ I IP V + AVA ++ ++ + Sbjct: 296 GKGPMAQAVIRRGRRAGVTTLQVPPLARALYFTGAIGREIPDVLFAAVAVILAHVWRLE 354 >gi|167584007|ref|ZP_02376395.1| type III secretion system protein [Burkholderia ubonensis Bu] Length = 361 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + + S +T + L + Sbjct: 14 LKKVREKGQVAKSKDVADAVTLAAVIGVMTAGESMLTGGLTRAIRTALDFVQGER--TPQ 71 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P ++ ++ GI S Q ++ L V P F ++ GIKR Sbjct: 72 ATLAALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITLEPVMPKFDALNPMNGIKR 131 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ +I +T + ++ + + + + K+L + Sbjct: 132 IFSLKSLLELVKMIVKAVVLACVIWKMMTSLFPLVVASVYEPTPQLSRVLWTVLMKLLGV 191 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 ++L + D + + +M+K+E K E K+S G+P K ++ +AR Sbjct: 192 VVLVVVVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAP 251 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 252 PRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 P +AR+L++ V ++AIP ++ VA ++ + Sbjct: 312 PPVARALYR-VERDAAIPEELFETVAAILRWV 342 >gi|317010987|gb|ADU84734.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SouthAfrica7] Length = 358 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLILPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KAIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ LKM+KQE+KDE KQ G+P Sbjct: 175 LKGQLLWFKNKALLLISSLLFLFFVLAFIDLVIKRRQYTHSLKMTKQEVKDEYKQQEGSP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ P++VAKG + +A Sbjct: 235 EIKAKIRQMMMKNAANKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPIVVAKGTDHLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346 >gi|297379968|gb|ADI34855.1| flagellar biosynthetic protein FlhB [Helicobacter pylori v225d] Length = 358 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|203284193|ref|YP_002221933.1| flagellar biosynthesis protein [Borrelia duttonii Ly] gi|201083636|gb|ACH93227.1| flagellar biosynthesis protein [Borrelia duttonii Ly] Length = 373 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 86/350 (24%), Positives = 168/350 (48%), Gaps = 8/350 (2%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +TE P+ ++ + A EG S E + S+ F S +L Sbjct: 21 SEDEGRTEVPTEQRKQKARREGQVLKSIEINSSISLFILFAVFFFMLSY----FAQELMD 76 Query: 65 LLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + E +S ++ L+ + R V ++ + G ++Q V+ L + Sbjct: 77 IFKWQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPI 136 Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P + R++ + +K + S++ N KS +KI ++ I I L N + + Sbjct: 137 MPKWDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSNIGKISKMPEYS 196 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ ++ + L+VLD + ++ LKM+K+EIK E K+ G+P Sbjct: 197 LEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGDP 256 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++++R + R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 257 LLRSRMRERMREILNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIA 316 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++IA E+N+ I E LAR L+ V IN IP +++ V++++ K+Y Sbjct: 317 FVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366 >gi|219566954|dbj|BAH04985.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] Length = 357 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 85/344 (24%), Positives = 159/344 (46%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L Sbjct: 2 SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + R + + +++ +L + +P +F + + Q VL+ V+ Sbjct: 62 DVDSSR--HPVMTLKQTISYFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ G+KRI+S+ ++++ +K +K + V + + +++ + I Sbjct: 120 MSAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLILILMPSIVGAAYQSVMDIAE 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++L L D G + +MSK E+K E K S G+P IK + Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239 Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+ Sbjct: 240 KKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A IPI P LARSL++ V + +P ++ VA+++ + Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPESLFETVAEVLAWV 342 >gi|258626191|ref|ZP_05721039.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603] gi|258581546|gb|EEW06447.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603] Length = 255 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 129/230 (56%) Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P +++ G KR++ + + V +KS +K++LV + + + + Sbjct: 1 MPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQ 60 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 ++HA + +++I + + +DI + Q ++LKM+KQE+KDE K + G P +K Sbjct: 61 NIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVK 120 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 R + + R + +MM A +A +IITNP H+++ALRY Q + APV++AKG + +A K+ Sbjct: 121 GRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKI 180 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 R+IA E++I I P LAR+L+ + IP + AVAQ++ ++ K Sbjct: 181 REIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 230 >gi|114799674|ref|YP_759006.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC 15444] gi|114739848|gb|ABI77973.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC 15444] Length = 357 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 168/354 (47%), Gaps = 1/354 (0%) Query: 1 MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+E D K S +++ DA +G+ P S+EA+ F+ IL LI L + + Sbjct: 1 MAEQDQDSGEKEFDASEQRLRDARKDGDVPQSKEANAFALILGILIAALILDAVVGPKLF 60 Query: 60 SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 D +L + + + P LL+ + + +IQ+ + Sbjct: 61 DDFSRILYHGDAFAADIFEGDGGATWAWIATTLLALSPLLLVMAALVLVALIIQQSIAFS 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 + P K+++ + IK Y L +F+K VK++ + T+ L + S Sbjct: 121 AKKIMPDMKKINPVDNIKNKYGTKGLTDFLKDTVKMLFAAGLGTLFLIQFTRDYYGSSSV 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + F ++++ F L LD+ + KL+M+++++K E+KQS G+ Sbjct: 181 DTADFYQFTFNQTLRLILYFFAFQFVLAALDLPLQWRIHSHKLRMTREDMKKEMKQSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P ++ +++ A R +M++ AT+++ NPTHYA+AL++ APV VAKG + + Sbjct: 241 PHMRQQRREKATKISRGQMLQNVKSATVVMVNPTHYAVALKWDPDSKLAPVCVAKGTDHL 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A K+R++A E+N+PI+ +P RS++ V ++ I + AVA I + + Sbjct: 301 AMKIRELAIENNVPIYSDPPATRSIYSMVEVDQEIQAEHFAAVAAAIQFVDRLR 354 >gi|308182928|ref|YP_003927055.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4] gi|308065113|gb|ADO07005.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4] Length = 358 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|82795281|gb|ABB91650.1| type III secretion protein HrcU [Pseudomonas syringae pv. tagetis] Length = 359 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 152/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ +LA L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLADESVNRLQALLGLSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + I + LS + + L M+ + S +Q + +K Sbjct: 63 IDRPFMASVELIANEGFSVLLSFTLCSV---GLAMLMRLISSWMQIGFLFAPKALKLDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S N++N + S +K + +G + + T++ ++ + + Sbjct: 120 KINPFSHAKQMFSGQNILNLVLSVLKALAIGATLYSQVKPALGTLILLANSELTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + L +IL + + ++D + KL+MS ++IK E KQS G+P +K+ ++ Sbjct: 180 VELFQHTLRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKDHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + A A +++ NPTHYA+AL Y E P++ KG++ A + + Sbjct: 240 LSHEILNQEPSAAPKPVEEADMLLINPTHYAVALYYRSGETPLPMIHCKGEDADALALIE 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + LAR+L+K V IP VA + + Sbjct: 300 RAKKAGIPVVQSIWLARTLYK-VKAGKYIPRTTLLTVAHIYKVVRQL 345 >gi|146278644|ref|YP_001168803.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC 17025] gi|145556885|gb|ABP71498.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17025] Length = 359 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 172/348 (49%), Gaps = 2/348 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE D ++K PS +K+E+A +G P S++ +S L+ L I + Sbjct: 1 MSEGD--EDKPHEPSQRKLEEARRKGELPKSQDLVTAASYGGLLLAALGLGQGAIQRMGD 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LL A + + L +S V+P + + + + + QR V+ Sbjct: 59 MGTSLLGQADRFSTLLSDKAQPQVGGLLVSVLLTVLPFFAIPALAAVAALVAQRALVVAP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P +R+S G + + N L F KS VK++LV + + +T + MLD ++ Sbjct: 119 TKLAPKTERISPVSGFRNRFGRNGLFEFAKSLVKLLLVAVVFALFITFHMAGMLDMLAMA 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + F + + L +++L + ++D W + + +MS++E+ DE K + G+P Sbjct: 179 PGLAVGRMFMLMLEFLAIVVLLSGGIGLIDYFWQRAEHLRRHRMSRKELTDEAKDAEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K +++ A ++M++ A +++ NPTHYA+ALR+ + + AP+ VAKG + IA Sbjct: 239 HVKAQRRQKAMEIATNRMLQDVVGADVVVVNPTHYAVALRWKRGDRRAPLCVAKGTDEIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 ++R+ A E +PI +P AR+L V + I P YKAVA I Sbjct: 299 ARIRERAAEAGVPIHRDPPTARALHAAVRVGEEIRPEHYKAVAAAIRF 346 >gi|239815246|ref|YP_002944156.1| type III secretion exporter [Variovorax paradoxus S110] gi|239801823|gb|ACS18890.1| type III secretion exporter [Variovorax paradoxus S110] Length = 365 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 179/354 (50%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D ++ EA + K++ A G A S + ++YL + + S Sbjct: 1 MAEQD--LDRNEAATPYKLQRARERGQAAKSTDVVAALVFGVAVVYLTWRGFGAVASQFR 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LL A + + + L+ SA L P M+ I ++Q P+L+ Sbjct: 59 FDQALLIHAGRMDPSGVG-LWPLIERALRSALTLAAPFFAAIMLAAIVGNMMQTGPILSF 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 VK F R++ G+K+++S+ L + ++ VK+ L+G + ++L S + Sbjct: 118 EPVKMDFTRINPVNGLKKLFSMRVLFDTARAIVKLALLGLVAFLALEALASQFYALASLS 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L + V + + L + + +LD+ ++ ++ K++MS++E+KDE K G+P Sbjct: 178 PVGYLRTLLDDLASVGLKMALVLTLIALLDLMYTRREFAKKMRMSQRELKDEAKHREGDP 237 Query: 241 IIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 I+ R + + R ++ + + T A ++ITNPTH A+AL+Y +P L+AKG + Sbjct: 238 RIRARLRELRRETLKRSLALRQTRNADMLITNPTHLAVALKYEHGRMASPQLLAKGAGHM 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A MR+IA H IP+ + P LAR L+K++P++ ++PP Y VA++I ++ + Sbjct: 298 AAAMREIAARHRIPVVQNPPLARRLYKELPVDHSVPPELYAQVARIIVWVFAMR 351 >gi|110677564|ref|YP_680571.1| flagellar biosynthesis protein FlhB [Roseobacter denitrificans OCh 114] gi|109453680|gb|ABG29885.1| flagellar biosynthetic protein FlhB [Roseobacter denitrificans OCh 114] Length = 362 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 161/349 (46%), Gaps = 1/349 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D +K+ + +K+ +A +G S E +S L+ LL F G+ + S Sbjct: 1 MSAPDEEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLLALLLFGESGLLELGS 60 Query: 61 DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + V++ + Q L + S ++P + + + R V Sbjct: 61 TMAVIIGQSAQIAPLFFEGAGTVPARGIIQSTGSALLPIFVYPALAVMLVLFATRGIVFA 120 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 V+P ++S+ K + L F+ SF K+I+ I+ + L M+ + Sbjct: 121 PTKVQPKLSKISVISNAKNKFGRTGLFQFVLSFSKLIIYSAILAVFLYHRTNEMVAALQT 180 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P + + LI +++ A + +D W + + K KMS++E+ DE K S G+ Sbjct: 181 TPQYTVILLAKICIEFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDETKNSEGD 240 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P +K ++ A+S ++ + A ++I NPTH+A+AL++ +T APV VAKG + Sbjct: 241 PYMKQERRQRAQSLAGTQVAVEVAAADVVIVNPTHFAVALKWDRTPGQAPVCVAKGVDET 300 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A ++R+IA E+ +PI +P AR+L I I P YKAVA I Sbjct: 301 ALRIREIATENAVPIHSDPPAARALHATTNIGDQIAPEHYKAVAAAIRF 349 >gi|76152319|gb|ABA39820.1| HrcU [Erwinia pyrifoliae] Length = 360 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMRLPLAR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q +S +V + L L A+ + + ++ IG + IQ P+ +KP F Sbjct: 63 IGQPFELALSEVVS--SALVLVATFCGLTVAIAALLRIIGGW-IQYGPLFAPEALKPDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ L + VK + TI + LT + ++ + S Sbjct: 120 RLNPINQFKQMFSVKKLSEMFNNIVKAAAICTIFYLVLTPDLESLARLAYGDLDSFWPAV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + + Sbjct: 180 EVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239 Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+AL Y P ++ KG++ AK + Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + NIP+ LAR+L++ IP +AVAQ+ Y++ + Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345 >gi|188532663|ref|YP_001906460.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|259909721|ref|YP_002650077.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcU protein [Erwinia pyrifoliae Ep1/96] gi|188027705|emb|CAO95558.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|224965343|emb|CAX56875.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcU protein [Erwinia pyrifoliae Ep1/96] gi|283479807|emb|CAY75723.1| Type III secretion protein HrcU [Erwinia pyrifoliae DSM 12163] Length = 360 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGLVETVLALDDVGMQKLQALMRLPLAR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q +S +V + L L A+ + + ++ IG + IQ P+ +KP F Sbjct: 63 IGQPFELALSEVVS--SALVLVATFCGLTVAIAALLRIIGGW-IQYGPLFAPEALKPDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ L + VK + TI + LT + ++ + S Sbjct: 120 RLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLARLAYGDLDSFWPAV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +V LL + LT+LD G + + + +MS Q+I+DE KQS G+P +K + + Sbjct: 180 EVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239 Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A + + A +++ NPTHYA+AL Y P ++ KG++ AK + Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + NIP+ LAR+L++ IP +AVAQ+ Y++ + Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345 >gi|119385353|ref|YP_916409.1| flagellar biosynthesis protein FlhB [Paracoccus denitrificans PD1222] gi|119375120|gb|ABL70713.1| type III secretion exporter [Paracoccus denitrificans PD1222] Length = 368 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 155/348 (44%), Gaps = 2/348 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + D+K + K+ A EG+ P S E L LF + + Sbjct: 1 MS-RENNDDKQFDATESKLRKARQEGDVPRSAELQSALMYLGFWFAALFATIWAVPAWLG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + + L L+ A + + G+ + + + + QR VL Sbjct: 60 -MAARVLGGEPWPDAEGRAVADLARALAGQAGLVTVAGVAIMALPILLGMVAQRSVVLTP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P FKRV+ + + + + LV F S K +LVG ++ + Sbjct: 119 KKLLPDFKRVNPVKNAAQKFGKSGLVTFAISLGKALLVGVGGWFLYASLLAWLMTSGAMR 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + +R+ +++ L A ++D+ W ++ + +MS+QE++DE K++ G+P Sbjct: 179 DLQWVEGLGLILRRAVLLALGIGAIFAIIDLIWKRLEYLKRHRMSRQEMQDEHKENEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++ + M+ +A +II NPTHYA+AL + + APV +AKG + +A Sbjct: 239 HLKAARRQKGVDIVLSAMLADVQKADVIIVNPTHYAVALEWKRGSGRAPVCLAKGVDDVA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++R+ A +H +PI+ +P AR+L V I I + VA I Sbjct: 299 RRIRERAQDHRVPIWSDPPCARALHATVEIGQEIKAEHFAPVAAAIRF 346 >gi|1185062|gb|AAB58971.1| flagellar export protein [Borrelia burgdorferi] Length = 372 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ +K + A EG S E + S+L F S + + Sbjct: 21 DDEGRTELPTDQKKQKASEEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + F + L + +IQ + ++P Sbjct: 81 AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137 Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 + ++ + K +S N KS +K++++ I + N + Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 S + K+ ++F+A + V D + Q+ LKM+K+E+K E K+ G+P++ Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 ++R K R + + A +A ++ITNP H+A+A+++ AP ++AKGQ+ IA Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 ++KIA E+N+P+ E LAR+L+ V +N IP +++ V++++ ++Y Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365 >gi|323171038|gb|EFZ56687.1| flhB HrpN YscU SpaS family protein [Escherichia coli LT-68] Length = 347 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 153/320 (47%), Gaps = 3/320 (0%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 L +S+ A + + F P + + + Q ++ + I L H L + Sbjct: 1 MGLAASLFAAFVVISSSF-PWYADFVRESFISVHQYAQ-EINNPEVIGQFLRHHLLILGK 58 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 ++ L + + S L+ + + P F ++S +GI R++S +L K V Sbjct: 59 FILTLLPMPA-AALLSSLVPGGWLFLPKKILPDFSKISPLKGIGRLFSSEHLAETGKMTV 117 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 K ++V ++ +SL N+ + L + + V+ ++ ++D+ Sbjct: 118 KSVVVLVMLWVSLRNNFASFLGLQALPFKLAMNEGLSLYACVMRNFVILFIFFALIDVPL 177 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 + + LKM+KQE+K+E K G P +K R + + R ++ + +A ++ITNPT Sbjct: 178 AKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPT 237 Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 HYA+AL+Y + AP +VAKG + IA +R++A E+ + + E P LARS++ +N Sbjct: 238 HYAVALQYDSSRAAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQ 297 Query: 334 IPPVFYKAVAQLIYKIYHKK 353 IP Y+A+A ++ + K Sbjct: 298 IPFQLYRAIAHVLTYVLQMK 317 >gi|66044456|ref|YP_234297.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae B728a] gi|63255163|gb|AAY36259.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae B728a] gi|330969107|gb|EGH69173.1| type III secretion protein HrcU [Pseudomonas syringae pv. aceris str. M302273PT] Length = 359 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 153/347 (44%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSLSFQG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S NL+N + S +K I +G + + + T++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|299069231|emb|CBJ40491.1| Hypersensitivity response secretion protein hrcU, Type III secretion exporter [Ralstonia solanacearum CMR15] Length = 354 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+EDA +G S + + + +L+ + L S + L + L Sbjct: 2 SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDIAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + R + + + H +L + +P +F + + Q VL+ V+ Sbjct: 62 DVDSSR--HPVMTLKQTIGHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ G+KRI+S+ ++++ +K +K + V + + ++ + I Sbjct: 120 MNAINPASGLKRIFSVRSMIDLIKMIIKGVAVAAAVWKLILILMPAIVGAAYQSVMDIAE 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++L L +D G + +MSK E+K E K S G+P IK + Sbjct: 180 IGITLLVRLLAAGGGLFLILGAVDFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239 Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K +AR K ++ + A ++ NPTHYA+A+RY E P ++AKG + A +R+ Sbjct: 240 KKLARELAEEAKPKQSVAGAQALVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A IPI P LARSL++ V + +P ++ VA+++ + Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVLAWV 342 >gi|203287732|ref|YP_002222747.1| flagellar biosynthesis protein [Borrelia recurrentis A1] gi|201084952|gb|ACH94526.1| flagellar biosynthesis protein [Borrelia recurrentis A1] Length = 373 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 166/350 (47%), Gaps = 8/350 (2%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +TE P+ ++ + A EG S E + S+ F S +L Sbjct: 21 SEDEGRTEVPTEQRKQKARREGQVLKSIEINSSISLFILFAVFFFMLSY----FAQELMD 76 Query: 65 LLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + + E +S ++ L+ + R V ++ + G ++Q V+ L + Sbjct: 77 IFKWQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPI 136 Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P + R++ + +K + S++ N KS +KI ++ I I L N + + Sbjct: 137 MPKWDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSNIGKISKMPEYS 196 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ ++ + L+VLD + ++ LKM+K+EIK E K+ G+P Sbjct: 197 LEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGDP 256 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++++R + R + A +A ++ITNP H+A+A+++ AP ++AKGQ+ I Sbjct: 257 LLRSRMRERMREISNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIV 316 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 +++IA E+N+ I E LAR L+ V IN IP +++ V++++ K+Y Sbjct: 317 FVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366 >gi|299066525|emb|CBJ37715.1| Flagellar biosynthetic protein flhB [Ralstonia solanacearum CMR15] Length = 363 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 179/354 (50%), Gaps = 4/354 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D K++ + K++ A +G SR+A + +++L V Sbjct: 1 MADQDMD--KSQPATPYKLQKAREKGQVAKSRDAISAVTFTVAMVFLASQGWDTWRRVFQ 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 LLA A + + + L+ L + L IP LL ++ + L+Q P+ + Sbjct: 59 INRALLAHAGNVDATEPA-MWHLIDQLVRAVLGLGIPFLLALLLAAVAGNLLQTGPIFSF 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP + R + +G KR++S+ L + ++ +K+IL+G + SL S Sbjct: 118 EPIKPEWSRANPVQGFKRLFSLRTLFDGARALLKLILLGLVAYFSLKSLTPQFYHLASLP 177 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + + + + + + + +LD+ ++ ++ K++MS +E+KDE K G+P Sbjct: 178 ASGFVRTLLDDLASLGLKMSAMLMFIALLDLIYTRREFSKKMRMSHKELKDEFKHREGDP 237 Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 I++R + + ++ + + T A ++ITNPTH A+ALRY+ E ++P LVAKG + Sbjct: 238 RIRSRLRKLRHEMLKRSRSVSKTRDADVLITNPTHVAVALRYVHGEMESPQLVAKGAGAL 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A MRKIA +H IP+ + +LAR+LF + ++ ++ P Y VA++I ++ + Sbjct: 298 AAVMRKIAAKHQIPVIQNRALARALFHSLEVDRSVQPALYADVARIIVWVFAMR 351 >gi|109947223|ref|YP_664451.1| flagellar biosynthesis protein FlhB [Helicobacter acinonychis str. Sheeba] gi|109714444|emb|CAJ99452.1| flagella-associated protein [Helicobacter acinonychis str. Sheeba] Length = 358 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ +M S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSRESVQELFNQLAKDTFLLILPILIILVMVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KAIEPKLSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ G+P Sbjct: 175 LKDQLLWFKNKALLLISSLLFLFFILAFIDLIIKRRQYTNSLKMTKQEVKDEYKQQEGSP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EVKAKIRQTMMRNAANKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDHLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA E++I I E +LAR L++ V +N+AIP ++AVA + ++ + Sbjct: 294 IRIKGIAREYDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346 >gi|289678002|ref|ZP_06498892.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae FF5] Length = 359 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 153/347 (44%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGFTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S NL+N + S +K I +G + + + T++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|116626501|ref|YP_828657.1| type III secretion exporter [Candidatus Solibacter usitatus Ellin6076] gi|116229663|gb|ABJ88372.1| type III secretion exporter [Candidatus Solibacter usitatus Ellin6076] Length = 354 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 84/352 (23%), Positives = 160/352 (45%), Gaps = 5/352 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ +++E A EG P ++E + L L + + Sbjct: 1 MADKSG---KTEQPTQRRLEKARTEGQFPAAKEFVSALQFMVFLGLLGSGGAGWFKQLRQ 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L A +L ++ ++ + ++ + + + L ++ Sbjct: 58 TTRSLFGLAFAPELR-PEDLIHVMWQIFQQLLLPLVMAGVAVAVATVAFRLATTRFGISF 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R + +K + L ++ + + + + E + + Sbjct: 117 KKLMPDAARFNPLSRLKDL-PKQTLPALAQAAFLLPVFLWAVWVVGQEKLDAFMALPMQS 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 S + ++ ++ + +D+ + S+L+MSKQEI++E+K GNP Sbjct: 176 VESGMNLICASLMELFWKAAGVFLLVGCVDLARQLQRHKSELRMSKQEIREEMKDVEGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K R + + R R+R +MM+ AT ++ NPTHYA+A+RY AP++VAKG N +A Sbjct: 236 QMKARIRRLQRDRVRKQMMKDVPTATAVVVNPTHYAVAIRYQMDGMAAPMVVAKGMNHLA 295 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 ++R+ A EH +PI E P LA++L+K V + IPP Y+AVA+++ I+ Sbjct: 296 LRIRQKATEHQVPIIENPPLAQALYKSVEVGQEIPPHLYRAVAEILAYIFKL 347 >gi|167820512|ref|ZP_02452192.1| type III secretion system protein [Burkholderia pseudomallei 91] Length = 427 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 81 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 138 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 139 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 198 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 199 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 258 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 259 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 318 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 319 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 378 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 379 PSVARALYR-VERDASIPEELFETVAAILRWV 409 >gi|167850345|ref|ZP_02475853.1| type III secretion system protein [Burkholderia pseudomallei B7210] Length = 420 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRYAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|330950827|gb|EGH51087.1| type III secretion protein HrcU [Pseudomonas syringae Cit 7] Length = 359 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 152/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSMSFQG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGFSVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S NL+N + S +K I +G + + + T+ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLAVLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|330957485|gb|EGH57745.1| type III secretion protein HrcU [Pseudomonas syringae pv. maculicola str. ES4326] Length = 359 Score = 275 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 149/347 (42%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLSLADDSVNRLEALLTLSFQG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + + LS + + + M+ + +Q + +K Sbjct: 63 IDRTFAASVELVASEGLSVLLSFTLCSV---GIAMLMRLIGSWVQIGFLFAPKALKVDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S NL+N + S +K + +G + + ++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSILKAVAIGATLYTQVKPALGALILLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VDLFRHILRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LAHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRAGETPLPLIHCKGEDEEALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|226198428|ref|ZP_03793996.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|225929485|gb|EEH25504.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] Length = 420 Score = 275 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|254499123|ref|ZP_05111813.1| putative flagellar biosynthetic protein FlhB [Legionella drancourtii LLAP12] gi|254351662|gb|EET10507.1| putative flagellar biosynthetic protein FlhB [Legionella drancourtii LLAP12] Length = 361 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 165/346 (47%), Gaps = 2/346 (0%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ A +G S E + S+L L + + ++ + L +L Sbjct: 13 EKTEKATPYKLQKAKEKGQVSKSAELTTCISLLVLLGMMSALWPKQLHEIQEMLRHILYL 72 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A Q + + +I L + + +P L ++ I + L Q V + + P FK Sbjct: 73 AAQMQFS-LDNINHLHQFILMQLLHQWLPFALAGVLAIILANLTQSGIVWSTTPLVPDFK 131 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R+++ +G K+++SI KS +K++ + + +L Sbjct: 132 RLNIVQGFKKLFSIKTCFEAAKSTLKLMSTFIFLFFAFKHQLTNILPLALTPTAQHPGLM 191 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ +LL ++ L VLD ++ ++ +MSKQE+KDE KQ G+P IK++ K Sbjct: 192 MHFLLSLIFQLLLLLSLLAVLDKFYTRWKFAKDQRMSKQEVKDEYKQREGDPKIKSKIKQ 251 Query: 249 IARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + + + ++ A +IITNPTH A+AL+Y +T AP +V K Q + +++++A Sbjct: 252 LQQQLRQKTASLKQVKTADVIITNPTHLAIALKYDRTSMPAPKVVCKAQGEMVSQVKELA 311 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +H +PI E S AR L+ V +N I Y A + +IY ++ Sbjct: 312 RKHGVPIIENKSFARLLYHSVELNQWINKELYPFAAAIFKEIYARR 357 >gi|332673425|gb|AEE70242.1| flagellar biosynthetic protein FlhB [Helicobacter pylori 83] Length = 358 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|217033738|ref|ZP_03439164.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10] gi|216943787|gb|EEC23227.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10] gi|317178869|dbj|BAJ56657.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F30] Length = 358 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|317180535|dbj|BAJ58321.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F32] Length = 358 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|317177398|dbj|BAJ55187.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F16] Length = 358 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G+K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLTIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|76819722|ref|YP_335839.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1710b] gi|76584195|gb|ABA53669.1| type III secretion inner membrane protein [Burkholderia pseudomallei 1710b] Length = 399 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 53 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 110 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 111 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 170 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 171 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 230 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 231 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 290 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 291 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 350 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 351 PSVARALYR-VERDASIPEELFETVAAILRWV 381 >gi|308063444|gb|ADO05331.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Sat464] Length = 358 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E F +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHAVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ G K ++S+ L++ +K+ L + + + N Sbjct: 115 KVIEPKFSKINPINGTKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L ++ +L L +D+ Q+ + LKM+KQE+KDE KQ GNP Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFILAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 IK + + + +KMM+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A Sbjct: 235 EIKAKIRQMMIKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH+I I E +LAR L++ V +N+ IP ++AVA + ++ + Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346 >gi|167898942|ref|ZP_02486343.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|167907272|ref|ZP_02494477.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 399 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 53 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 110 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 111 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 170 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 171 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 230 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 231 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 290 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 291 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 350 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 351 PSVARALYR-VERDASIPEELFETVAAILRWV 381 >gi|126445400|ref|YP_001063276.1| type III secretion system protein HrcU [Burkholderia pseudomallei 668] gi|237510110|ref|ZP_04522825.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] gi|254186950|ref|ZP_04893466.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|254301368|ref|ZP_04968812.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|126224891|gb|ABN88396.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 668] gi|157810968|gb|EDO88138.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|157934634|gb|EDO90304.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|235002315|gb|EEP51739.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 420 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|254263389|ref|ZP_04954254.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] gi|254214391|gb|EET03776.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] Length = 420 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|254185079|ref|ZP_04891668.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|184215671|gb|EDU12652.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] Length = 420 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRSER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|167743331|ref|ZP_02416105.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|254194002|ref|ZP_04900434.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|169650753|gb|EDS83446.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] Length = 420 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|237751072|ref|ZP_04581552.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879] gi|229373517|gb|EEO23908.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879] Length = 372 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 6/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KT APS +KI+ A EG+ S + + + LLF P + Sbjct: 1 MAE----EEKTHAPSQRKIQKAREEGSVAKSPDLVGLVGL-VVGLMLLFIIFPFWVKIFK 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+V ++ I + + A+ +P M+ GI + Q +L+ Sbjct: 56 GLYVECTKLFLVDF-NMHTIFAITLTILKVAALCAMPFFFALMVAGIIGNVAQFGFLLSF 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +++ +G K ++S+ L++ +K+ + + + + + Sbjct: 115 KIIKPKVDKINPIKGAKNLFSLKKLLDGFIITLKVFIAFAVGFFIFVGFLDEVANISMSP 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++ +L + +LD +Q+ L+MSKQE+KDE KQ GN Sbjct: 175 LKEQLTWFYQKALILIGALLFLFLVMGILDFLIKRYQYIKSLRMSKQELKDEFKQQEGNQ 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + I +KMM A A +++TNPTHYA+ALR+ APV+VAKG + +A Sbjct: 235 EVKAKIRQIMMKNAMNKMMSAIPSANVVVTNPTHYAVALRFNSETESAPVVVAKGIDHLA 294 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +++ IA EH I I E P LAR L++ V ++ IP ++AV +L ++ + Sbjct: 295 VRIKGIAREHEILIIENPPLARELYRLVDVDRMIPGEMFEAVVELFQQVAKLE 347 >gi|126458610|ref|YP_001076232.1| type III secretion system protein HrcU [Burkholderia pseudomallei 1106a] gi|242311362|ref|ZP_04810379.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|126232378|gb|ABN95791.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106a] gi|242134601|gb|EES21004.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] Length = 420 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|168785695|ref|ZP_02810702.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|261226164|ref|ZP_05940445.1| putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK2000] gi|261256582|ref|ZP_05949115.1| putative integral membrane protein-component of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK966] gi|189374061|gb|EDU92477.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] Length = 373 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 149/326 (45%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA + SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKEQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + ++ S + ++I NPTH A+ + + + P++ + N +A +RK A Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 E IPI + LAR ++ + Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320 >gi|271500418|ref|YP_003333443.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii Ech586] gi|270343973|gb|ACZ76738.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii Ech586] Length = 359 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 162/348 (46%), Gaps = 9/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+SKK++DA +G S++ A L +L G+ + + + + L+ Sbjct: 3 EKTEKPTSKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDNGMSKLQALMQLPLSR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + + S + + + ++ I IQ P+ + +K F Sbjct: 63 LSDPFVHAADEV---FSEALSLLSTFCLLTISVALLMRIVGGWIQYGPLFAVEALKIDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ IK+++++ L + + S +K +G + + + +++ + + Sbjct: 120 RLNPVNQIKQMFTMRKLTDMLTSILKATTIGLVFWLVVIPQLEWLVELAYGDLTAFWKGV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ V L + L +LD G + + + +MS ++I++E K S G+P +K +KS Sbjct: 180 ESVLKSVARTTLSSLLALAILDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHRKS 239 Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A+ + + A +++ NPTHYA+AL Y + P ++ KG++ AK + Sbjct: 240 VAQEILNEPASPRAKPNIEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDEQAKALI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A N+P+ LAR+L++ VP IP ++VAQ+ Y++ + Sbjct: 300 ARAQHANVPVIRFIWLARTLYR-VPEGHYIPRHTLQSVAQV-YRVLRQ 345 >gi|167915634|ref|ZP_02502725.1| type III secretion system protein [Burkholderia pseudomallei 112] Length = 396 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 50 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 107 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 108 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 167 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 168 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 227 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 228 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 287 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 288 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 347 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 348 PSVARALYR-VERDASIPEELFETVAAILRWV 378 >gi|818894|gb|AAB05078.1| HrpY [Pseudomonas syringae pv. syringae] gi|148562543|gb|ABQ88362.1| HrcU [Pseudomonas syringae pv. syringae] Length = 359 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 152/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSLSFQG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGFSVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S NL+N + S +K I +G + + + T+ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLAVLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A+ + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LAQEILNQEPSAAPKPLEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|167724367|ref|ZP_02407603.1| type III secretion system protein [Burkholderia pseudomallei DM98] Length = 360 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 192 VSVVVAVLAAADYKIARVMFIRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342 >gi|134281989|ref|ZP_01768695.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|134246518|gb|EBA46606.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] Length = 420 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 74/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLATAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|217422649|ref|ZP_03454152.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|217394880|gb|EEC34899.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] Length = 420 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|238563893|ref|ZP_00438080.2| type III secretion inner membrane protein [Burkholderia mallei GB8 horse 4] gi|254176635|ref|ZP_04883293.1| type III secretion inner membrane protein [Burkholderia mallei ATCC 10399] gi|254201086|ref|ZP_04907451.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei FMH] gi|254205051|ref|ZP_04911404.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei JHU] gi|147748698|gb|EDK55773.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei FMH] gi|147754637|gb|EDK61701.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei JHU] gi|160697677|gb|EDP87647.1| type III secretion inner membrane protein [Burkholderia mallei ATCC 10399] gi|238519734|gb|EEP83202.1| type III secretion inner membrane protein [Burkholderia mallei GB8 horse 4] Length = 420 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|167923476|ref|ZP_02510567.1| type III secretion system protein [Burkholderia pseudomallei BCC215] Length = 360 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342 >gi|167828885|ref|ZP_02460356.1| type III secretion system protein [Burkholderia pseudomallei 9] Length = 360 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342 >gi|255026794|ref|ZP_05298780.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J2-003] Length = 324 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 86/318 (27%), Positives = 165/318 (51%), Gaps = 5/318 (1%) Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88 S+E + S+L L FF I + LL + + + +L+ Sbjct: 1 AKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVALLKQPPKLANMESYSLFYLM---- 56 Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148 ++++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V Sbjct: 57 -EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEV 115 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 +K+ + I L+ + I ++ T++ + N L F + + + L IA + + Sbjct: 116 VKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGL 175 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268 LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT + Sbjct: 176 LDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFV 235 Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + NPTH ++ +RY +T++ AP L+ KG++ +A +R++A +P+ LARS++ Sbjct: 236 VNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTT 295 Query: 329 PINSAIPPVFYKAVAQLI 346 + I YK V +++ Sbjct: 296 NPDEYIQEDLYKDVIEVM 313 >gi|117928068|ref|YP_872619.1| type III secretion exporter [Acidothermus cellulolyticus 11B] gi|117648531|gb|ABK52633.1| type III secretion exporter [Acidothermus cellulolyticus 11B] Length = 391 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 77/353 (21%), Positives = 158/353 (44%), Gaps = 7/353 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ KTE P+ +K+++A EG S E + +L + + + + Sbjct: 1 MADRS---QKTEKPTQRKLKEARREGRVARSPEVGAWLGLLVGIFLVHLTMTRTTAAFRQ 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + L + D + V +L S + P ++ +G+ + Q L+ Sbjct: 58 AIDGLTQ---VIRTPDPNLAVHVLGTSLASGAVAAAPLAGAILLTALGASVAQGGLRLSA 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P ++ ++ G KR++ K+ K L+ I+ ++ Sbjct: 115 KALAPKWQSLNPLNGWKRMFGPRGGWEAAKALAKTGLLALILYDTMRGLVPLTTTGTVTP 174 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 +++ A V + + L LD + + + L+M+K E+K+E++ + G+P Sbjct: 175 LQGVVHTAGSAVLRFARDAAVAGLLLAFLDYAYQLRRHRASLRMTKHEVKEELRTTEGDP 234 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I++ + + R +M+ + A +++ NPTH A+ALRY + AP +VAKG +A Sbjct: 235 RIRSAIRVRQMALRRRRMIRDVATADVVVVNPTHIAVALRYTPG-SGAPTIVAKGAGAVA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R A H +P+ E+ LAR+L++ + IP + AVA+++ ++ K Sbjct: 294 ARIRDEAIRHRVPLVEDIPLARALYRICDVGQEIPRELFVAVARVLAFVFSLK 346 >gi|320107036|ref|YP_004182626.1| type III secretion exporter [Terriglobus saanensis SP1PR4] gi|319925557|gb|ADV82632.1| type III secretion exporter [Terriglobus saanensis SP1PR4] Length = 373 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 25/362 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ ++E S ++ + + ++G SRE + +++A ++ L Sbjct: 1 MSED-----RSEKASEQRKKKSRDKGEGVRSRELNAAFAMMAGILVLG--------GSAR 47 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF-------GIGSYLIQ 113 L A+A + L + H + L +A L++P L + + S ++Q Sbjct: 48 RFVPLWATAYREMLSALGHTEWTPESLLDAARILILPTLGPVALVMGAAFCGALLSGMVQ 107 Query: 114 RIPV-LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172 + + + R++ +K+I S LV KS V +V + L Sbjct: 108 SGGLQFHAEALAIKTTRLNPWSNLKQIASARALVRVSKSLVPAGIVLALGISCLHGVMDP 167 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 M + + AF +L+ + D + W +LKMSKQE++ E Sbjct: 168 MAVLSNFRLMT----AFSASYALLLNAAWLMVAWAGFDYVMEWRSWNQRLKMSKQELRQE 223 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 K++ G+P +K R + I R+ + + SRAT++I NPTH+A+AL + P ++ Sbjct: 224 HKEAAGDPQVKGRIRQIQRAMRKRRAKVDVSRATVVIVNPTHFAVALEFSFETMQPPRVL 283 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG++L A ++R+ A +PI E P LARSL++ V + + IP Y AVA ++ +Y + Sbjct: 284 AKGRDLHAHEIREEAMWAGVPIVENPLLARSLYRSVKVGNTIPFELYAAVAGILAFLYRQ 343 Query: 353 KI 354 ++ Sbjct: 344 EV 345 >gi|14588842|emb|CAA68101.2| HrcU protein [Pantoea agglomerans] Length = 360 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 8/341 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++DA +G P S++ + +L G+ + + + + LA Sbjct: 3 EKTEKPTEKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + ++ + L + + + + I IQ ++ +KP F Sbjct: 63 LNQPFEQAVNEVA---GSALLLVTTFFGITVAVAALLRIIGGWIQYGLLIAPETIKPDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ K+++S+ L + + + +K + TI + L + + + S Sbjct: 120 RLNPMNQFKQMFSVKKLTDMLNNILKAAAICTIFYLVLNPDLDALSRLAYGDLDSFWPAV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +V LL + LT+LD G + + + +MS +I+DE KQS G+P +K + + Sbjct: 180 EVMLTRVSRQTLLTLLILTLLDFGLQKYFFLKQQRMSHHDIRDEYKQSEGDPHMKGHRHA 239 Query: 249 IARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A+ + E +A +++ NPTHYA+AL Y P +V KG++ AK + Sbjct: 240 VAQELLNAPASPVKREPLEKADLLLVNPTHYAVALYYRPALTPLPRIVCKGEDNEAKTLI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 A + NIP+ LAR+L++ IP +AVAQ+ Sbjct: 300 ARAQKANIPVIRFVWLARTLYRS-EEGQLIPRHTLQAVAQV 339 >gi|254254348|ref|ZP_04947665.1| Type III secretory pathway component EscU [Burkholderia dolosa AUO158] gi|124898993|gb|EAY70836.1| Type III secretory pathway component EscU [Burkholderia dolosa AUO158] Length = 343 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 155/340 (45%), Gaps = 4/340 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + P++K++ DA +G+ P S E + + + L + + + + Sbjct: 3 EKNQQPTAKRLRDAREKGDVPKSAETISSAFFVGVCVALAVGIGTLFARLQALFRLAFDA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I L+ + + L + ++ G+ + +Q V+ + + P Sbjct: 63 IG--AADPSARIAVLIDGAARDWAMLSAQIVAAGLLAGVLAGFVQVGGVMAWSRLVPQLS 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL Sbjct: 121 RLNPAEGLKNMWSMRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++DI H++ K+KMS +E++ E K+ G+P ++ +++ Sbjct: 181 VKLLMLLFGWAALIYIVMALIDIVHQRHEFNRKMKMSIEEVRREYKEDEGDPHVQAKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYYG-GIGTLPWVLARGEGDAAERIVRLAR 298 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + P LA++L+ P N I P ++ VAQL+ Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338 >gi|53722644|ref|YP_111629.1| type III secretion system protein HrcU [Burkholderia pseudomallei K96243] gi|52213058|emb|CAH39096.1| putative type III secretion protein [Burkholderia pseudomallei K96243] Length = 360 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342 >gi|53716421|ref|YP_106206.1| type III secretion system protein HrcU [Burkholderia mallei ATCC 23344] gi|52422391|gb|AAU45961.1| type III secretion inner membrane protein [Burkholderia mallei ATCC 23344] Length = 360 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 14 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342 >gi|326794359|ref|YP_004312179.1| type III secretion protein, YscU/HrpY family [Marinomonas mediterranea MMB-1] gi|326545123|gb|ADZ90343.1| type III secretion protein, YscU/HrpY family [Marinomonas mediterranea MMB-1] Length = 368 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 148/343 (43%), Gaps = 10/343 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + KKI+D+ +G S++ + L +L G+ ++ + L+ Sbjct: 3 EKTEKATPKKIKDSRKKGQVGQSQDIHKLMILGVLLEVVLGMVDSGVRNLEKLTSIPLSM 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + V + A+ +V+ L + ++F + +Q ++ +K F Sbjct: 63 INQPFQYALQATV---VNCLTIAASMVMMALGIAVLFRLLGGWLQFGFLIAPEALKIDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ +K ++S L SF+K I +G ++ LT ++ + + Sbjct: 120 RLNPFSQLKNMFSGKKLFELFNSFIKAITIGVVMYFILTPILPSLGKLALTDLDTTWRGI 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 KV + + + +D G + + LKMSK ++K E K G+P +K ++KS Sbjct: 180 AELFLKVERACVGVLIVIASIDFGMQKYFHFKSLKMSKDDVKQEYKNQEGDPHLKGQRKS 239 Query: 249 IARSRIRHKMMEA------TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 A + A A ++ NPTH+A+AL Y E P ++ KGQ+ A Sbjct: 240 EAVRLATEEPSPAPSAKPELGEADTLVVNPTHFAVALYYRSEETPLPKILTKGQDQDALD 299 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + + A E IP+ LAR+L+K+ IP + VA++ Sbjct: 300 LIEQAKEKGIPVIRFIWLARTLYKEQE-GHYIPRTTLRYVAKI 341 >gi|115377814|ref|ZP_01465002.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1] gi|115365146|gb|EAU64193.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1] Length = 269 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 131/263 (49%), Gaps = 1/263 (0%) Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 L P + + +Q + ++ + P ++++ +GIK I+S +V +K Sbjct: 1 MLFLTAPIVAGGAVIAGLVEFLQVGALFTMDPLIPKLEKLNPIQGIKNIFSKKTVVEMIK 60 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + VKI + ++ + + ++ + + +L V +V + L ++ D Sbjct: 61 NLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLAVMGEMVYRVCTRVALVFLLFSIFD 120 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 I W + ++ MSK ++K E K+S G+P K +K + + + MEA A +I+T Sbjct: 121 IWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHRKQMHQEIMEGAQMEAVKDADVIVT 180 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NP H A+AL+Y + ++ AP ++AKG + A++++ IA E ++P LA +L + V + Sbjct: 181 NPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAIARESDVPTLRNVPLAHALLR-VDV 239 Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353 IP Y AVA+++ +Y K Sbjct: 240 GQDIPEELYDAVAEVLNFVYGLK 262 >gi|302185355|ref|ZP_07262028.1| type III secretion component protein HrcU [Pseudomonas syringae pv. syringae 642] gi|256259405|gb|ACU65042.1| HrcU [Pseudomonas syringae pv. syringae] Length = 362 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 149/347 (42%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + + K+I DA G S++ ++ L + + S + + + Sbjct: 3 EKNQDATPKQIRDARKRGQVAQSQDLPKLLILVVVSEITLGMADVSMEKLQSLIKLSMTR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q L + +V L + + L + + M+ + +Q + +KPS + Sbjct: 63 MDQPFLRTVGEVVTQGVWLVAAFAVLSV---GVAMLMRLLGSWMQFGVLFAPEALKPSME 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +K+++++ +L + +K ++ ++ + + T++ + ++ + + Sbjct: 120 KLNPFSHLKQMFTLRSLTTSLSGIIKAAIIAVVMWMIVEPALGTLVSLVHSDLVTFWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++L + + L V D + +L+MS ++IK E K S GNP IK ++ Sbjct: 180 SKLFHQILRVTCGILLVLAVADFAIQKYFHAKQLRMSMEDIKQEYKNSEGNPEIKGHRRQ 239 Query: 249 IARSR---IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A + A ++I NPTHYA+AL Y E P + K + A + + Sbjct: 240 LAHELLNQAPKAPPKPVKDADVLIVNPTHYAVALYYRPGETALPRIHCKNIDAGALALIE 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A IP+ + LAR+L++ VP + IP +AVAQ+ I Sbjct: 300 EAKRERIPVVQCIWLARTLYR-VPQDRFIPRDTLQAVAQIYGVIKQL 345 >gi|221200564|ref|ZP_03573606.1| bcscU [Burkholderia multivorans CGD2M] gi|221209221|ref|ZP_03582212.1| bcscU [Burkholderia multivorans CGD2] gi|221170911|gb|EEE03367.1| bcscU [Burkholderia multivorans CGD2] gi|221179905|gb|EEE12310.1| bcscU [Burkholderia multivorans CGD2M] Length = 343 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 154/340 (45%), Gaps = 4/340 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + P++K++ +A +G+ P S E + + + L + + ++ + Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A + + I L+ + + L + ++ G+ + +Q V+ + + P Sbjct: 63 AG--AADPSARIATLIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++DI H++ K+KMS E++ E K+ G+P I +++ Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYYG-GIGTLPWVLARGEGDAAERIVRLAR 298 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P LA++L+ P N I P ++ VAQL+ Sbjct: 299 NALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338 >gi|124382486|ref|YP_001025750.1| type III secretion system protein HrcU [Burkholderia mallei NCTC 10229] gi|126446560|ref|YP_001077835.1| type III secretion system protein HrcU [Burkholderia mallei NCTC 10247] gi|254359173|ref|ZP_04975445.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei 2002721280] gi|126239414|gb|ABO02526.1| type III secretion inner membrane protein [Burkholderia mallei NCTC 10247] gi|148028360|gb|EDK86320.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei 2002721280] gi|261826829|gb|ABM98869.2| type III secretion inner membrane protein [Burkholderia mallei NCTC 10229] Length = 420 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ +G S++ + ++ A + L S ++ + L + Sbjct: 74 LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ GI S Q ++ L V P F ++ GIKR Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK +++ + +T + ++ + + + + K+L Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + + +A L D + + + +M+K+E+K E K+S G+P K ++ +AR Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 312 PRQRGGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V +++IP ++ VA ++ + Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402 >gi|161520299|ref|YP_001583726.1| type III secretion exporter [Burkholderia multivorans ATCC 17616] gi|189353522|ref|YP_001949149.1| flagellar biosynthesis pathway component [Burkholderia multivorans ATCC 17616] gi|160344349|gb|ABX17434.1| type III secretion exporter [Burkholderia multivorans ATCC 17616] gi|189337544|dbj|BAG46613.1| flagellar biosynthesis pathway component [Burkholderia multivorans ATCC 17616] Length = 343 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 154/340 (45%), Gaps = 4/340 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + P++K++ +A +G+ P S E + + + L + + ++ + Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A + + I L+ + + L + ++ G+ + +Q V+ + + P Sbjct: 63 AG--AADPSARIATLIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ EG+K ++S+ NLVN K +K L+ + + E+ + P S L Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDPSVQSGFTRPMSTLALI 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++DI H++ K+KMS E++ E K+ G+P I +++ Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYYG-GIGTLPWVLARGEGDAAERIVRLAR 298 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + P LA++L+ P N I P ++ VAQL+ Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338 >gi|330819403|ref|YP_004348265.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia gladioli BSR3] gi|327371398|gb|AEA62753.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia gladioli BSR3] Length = 359 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 4/343 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G S + + S+ + +++ + S+ + L Sbjct: 2 SDEKTEEPTDKKLRDARKDGQVSKSSDLADAISMTVAIGFVMAAGAHLRDSMRQLVMSAL 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 T I + L A V+P L M G+ +Q + L V P+ Sbjct: 62 DFVTTE--HSIPDMFDRLYRFGGIALLAVVPLALAAAMAGLMGSAMQVGLQIALKPVMPN 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG+K+I+SI ++ K VK L+ ++ + + + + I + Sbjct: 120 LNSLNPGEGLKKIFSIKTVIETAKMIVKAALIFAVMWVVIRGLFPLVSGSIYQPLAELSA 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + K++++ + + D+ + ++KMSK E+K E K G+P+IK + Sbjct: 180 MYWGILVKLMMIAAVIFIVVGAGDVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGER 239 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K IAR +RA +++ NPTHYA+ALRY E+ PV++AKG + A +R+ Sbjct: 240 KRIAREMANSPP-PRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRA 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A E +PI P +AR+L+K V ++ IP V ++ +A ++ + Sbjct: 299 AAEAEVPIVGNPPVARALYK-VGVDEPIPEVLFETIAAILRWV 340 >gi|28868600|ref|NP_791219.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato str. DC3000] gi|213968267|ref|ZP_03396411.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato T1] gi|301381804|ref|ZP_07230222.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato Max13] gi|302061995|ref|ZP_07253536.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato K40] gi|302135077|ref|ZP_07261067.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851838|gb|AAO54914.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato str. DC3000] gi|213926905|gb|EEB60456.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato T1] gi|330963058|gb|EGH63318.1| type III secretion protein HrcU [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015106|gb|EGH95162.1| type III secretion protein HrcU [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 155/348 (44%), Gaps = 7/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ +LA L + + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLANESVNRLQALLALTFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + S + + + + + L M+ + S +Q + +K K Sbjct: 63 IERPFM---SAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFLFAPKALKLDIK 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+++S N++N + S +K + +G + + T++ +++ + L+ Sbjct: 120 KIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLATYLHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + VL +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 IELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + IP+ + LAR+L+K V + IP AV + + + Sbjct: 300 QAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 346 >gi|238023710|ref|YP_002907942.1| type III secretion system protein HrcU [Burkholderia glumae BGR1] gi|237878375|gb|ACR30707.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia glumae BGR1] Length = 352 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 166/345 (48%), Gaps = 8/345 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ KK+ DA +G A S + + S+ A + +++ + + + L+ Sbjct: 2 SDEKTEEPTDKKLRDARKDGQASKSSDLADAISMTAAIGFVIAASA----HLRDSMRQLV 57 Query: 67 ASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 SA D + + L A V+P L + G+ +Q + L V Sbjct: 58 VSALDFVSTDHSLPDMFDRLYRFGGIALLAVVPLALAAALAGVMGSAMQVGLQIALKPVM 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P+ ++ EG+K+I+S+ ++ +K VK L+ ++ + + + I + Sbjct: 118 PNLNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWVVVRGLIPLVSGAIYQPLAEL 177 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + + K++++ + + D+ + ++KMSK E+K E K G+P+IK Sbjct: 178 SAMYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKG 237 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++ IAR +RA +++ NPTHYA+ALRY E+ PV++AKG + A +R Sbjct: 238 ERRRIAREMANAPP-PRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIR 296 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 + A E +PI P +AR+L+K V ++ IP ++ +A ++ + Sbjct: 297 RAAAEAEVPIVGNPPVARALYK-VGLDEPIPDALFETIAAILRWV 340 >gi|221209600|ref|ZP_03582581.1| bcscU [Burkholderia multivorans CGD1] gi|38639345|gb|AAR25811.1| BcscU [Burkholderia multivorans E243] gi|221170288|gb|EEE02754.1| bcscU [Burkholderia multivorans CGD1] Length = 343 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 155/340 (45%), Gaps = 4/340 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + P++K++ +A +G+ P S E + + + L + + ++ + Sbjct: 3 EKNQPPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I L+ + + L + ++ G+ + +Q V+ + + P Sbjct: 63 VG--AADPSARIAALIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++DI H++ K+KMS E++ E K+ G+P I+ +++ Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIEAKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALHYG-GIGTLPWVLARGEGDAAERIVRLAR 298 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + P LA++L+ P N I P ++ VAQL+ Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338 >gi|330872921|gb|EGH07070.1| type III secretion protein HrcU [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 359 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 155/348 (44%), Gaps = 7/348 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ +LA L + + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLANESVNRLQALLALTFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + S + + + + + L M+ + S +Q + +K K Sbjct: 63 IERPFM---SAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFLFAPKALKLDIK 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+++S N++N + S +K + +G + + T++ +++ + L+ Sbjct: 120 KIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLATYLHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + VL +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 IELFQHVLRVILGLLLVIALVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +A + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A + IP+ + LAR+L+K V + IP AV + + + Sbjct: 300 QAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 346 >gi|320538195|ref|ZP_08038090.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421] gi|320145012|gb|EFW36733.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421] Length = 379 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 170/353 (48%), Gaps = 9/353 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +TE P+ K+ A EG P S++ + + + L+ + S L Sbjct: 22 EDEGRTEDPTETKLRKAREEGRVPKSQDMNSALVVFFPALALILLAPHILNSCMEILKFF 81 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124 Q + + + + ++V P + + G+ S LIQ + + ++ Sbjct: 82 FLRCIQADIRSGEWFFVFIKYFA----QIVFPITFIALTAGVLSNLIQNRGFLFSTKPIQ 137 Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 P F ++S R ++SI L N KS +K+ + + + + N + + + Sbjct: 138 PKFDKISPNIVRFFTRALFSIEGLFNLAKSLMKVAAIVFVSYLIIKSNITVFISMLQVSF 197 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +++ K+L + L + + D + Q+ LKMSK EIK+EIK+ G+P+ Sbjct: 198 VQAVFYIAGLAAKILAAVSLLLLLFAIPDYFFQRKQFIDSLKMSKSEIKEEIKEQEGDPL 257 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK++ + I + + A ++ITNPTHYA+A++Y E AP+++AKG + +A+ Sbjct: 258 IKSQLRR-QMQAIVRESARGAATADVVITNPTHYAVAVKYDLGEMPAPIVIAKGSDQLAQ 316 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 ++++IA E+NIPI E LARSL+ QV I +P ++ A+ + K+ K+ Sbjct: 317 RIKEIARENNIPIEENKPLARSLYAQVAIGKEVPYEYFNALVLIFTKLDKFKM 369 >gi|170738283|ref|YP_001779543.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] gi|169820471|gb|ACA95053.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] Length = 357 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 164/346 (47%), Gaps = 6/346 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 D KTE P+ +K+++A +G S + +L L F + P + ++ ++ + Sbjct: 2 SDEKTEQPTRRKLKEARKKGTVAKSVDLVAAVLVLVSLALFTFAWHPLLDALHQNISRAI 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + + +L H + + + + S Q ++ + V P Sbjct: 62 DFCGSER--SMHTLWSVLMHELANGAIACCAISVAAALAAALSIGAQVGLQVSFDPVMPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 R+S G+K+I+S L++ +K VK +++ + + + + ++ ++ Sbjct: 120 MDRLSPAAGLKQIFSKRALIDLLKMSVKAVVIAAALWHVIVSLFPLITSAMAEPLAALSQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + K+L + + V+D + +MSK E+K E+K+ G P +K+ + Sbjct: 180 ILWHALLKLLFAAAVLFLVVGVVDWKIQHWLMMRAQRMSKDEVKRELKEREGEPKLKHER 239 Query: 247 KSIARSRIRH---KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 + A+ + + A RA +++ NPTHYA+ALRY++ E PV++AKG + A+++ Sbjct: 240 RKRAKELVNGGGESLSGAVGRANVVVVNPTHYAVALRYVRGETPLPVVLAKGIDDAAREI 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 R +A + +PI P +AR+L+ +V + IP ++ VA ++ + Sbjct: 300 RALATQRGVPIVANPPVARALY-EVAEHRPIPSELFEVVAAILRWV 344 >gi|206896079|ref|YP_002246703.1| flagellar biosynthetic protein FlhB [Coprothermobacter proteolyticus DSM 5265] gi|206738696|gb|ACI17774.1| flagellar biosynthetic protein FlhB [Coprothermobacter proteolyticus DSM 5265] Length = 343 Score = 268 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 88/347 (25%), Positives = 169/347 (48%), Gaps = 12/347 (3%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 +TE PS +++E A+ EGN P S E + + ++ L ++ + S + Sbjct: 3 EGERTEPPSPRRLERAIQEGNVPQSPELTGAIGLFVFVLILRVYYPRFVSSWQRMWFGVF 62 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S + +V L T L L + + + L+ L + P Sbjct: 63 YSVSPETAAHDLAVVLLSTLPVLLVPLLAV----------VLATLVLSGVRLYPKKMVPK 112 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ + IKRI+S+ +L +K+IL+ + + ++ + +P + Sbjct: 113 LDGLNPAQNIKRIFSLQSLEQMGIGLLKVILLSVVAYFLAKDRLVGIMS-GTQDPIQFMS 171 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + + +L+ ++ + + D + +W++ LKM+K+E+K+E+K G+P +K R Sbjct: 172 LSASILTDILLYLVAVYLLIGLADYAFQRRRWWNSLKMTKEEVKEEMKSIEGDPTVKARL 231 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 +S R + + +AT++ITNPT YA+ALRY + AP LVAKG +A++++ Sbjct: 232 RSRMRQYAMRRSLADVKKATVVITNPTEYAVALRYEKG-MVAPELVAKGAGWLAQRIKDE 290 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +N+P+ P LAR++F++V + I P Y+AVA ++ ++ KK Sbjct: 291 ARRYNVPVVVRPELARTIFRKVEVGDYITPDLYQAVAAVLVEVMKKK 337 >gi|313901501|ref|ZP_07834951.1| type III secretion exporter [Thermaerobacter subterraneus DSM 13965] gi|313468239|gb|EFR63703.1| type III secretion exporter [Thermaerobacter subterraneus DSM 13965] Length = 407 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 156/336 (46%), Gaps = 2/336 (0%) Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED--I 77 A G S + +LA V L A + D + Sbjct: 1 RQARRRGQVARSADLPAALVLLALAALAGTLVPLAARQVAGLARRLWAPSPAPLPADWTV 60 Query: 78 SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137 + L + L P L + + +Q + P ++RV+ G++ Sbjct: 61 AQAADLGRVVLLGTLAAAGPLALAGWVVAAAAGFVQAGGLFQPGLAAPRWERVNPLAGLQ 120 Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 R+ S LV +K+ VK+ ++ + +L ++ A ++L A +++ +L Sbjct: 121 RLVSRRALVELLKAPVKLAVMAAALGPALLGAGMQLITATGAPLPAMLGLAGRSLQGLLW 180 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257 L + + D + + + L+M+ QE K + K++ G+P+++ R + R R + Sbjct: 181 RGALAYLVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQRIRQRQRHLARRR 240 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M++ RA +++TNPTH A+ALRY APV+VAKG + +A ++R +A +H +P+ EE Sbjct: 241 MLQEVPRADVVVTNPTHVAVALRYDPARMGAPVVVAKGVDFLALRIRALAEQHGVPVMEE 300 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 P+LAR+L++ V + IP FY AVA+++ ++ + Sbjct: 301 PALARALYRAVEVGREIPAAFYVAVAEVLAFVWRLR 336 >gi|261344588|ref|ZP_05972232.1| type III secretion system protein BsaZ [Providencia rustigianii DSM 4541] gi|282567502|gb|EFB73037.1| type III secretion system protein BsaZ [Providencia rustigianii DSM 4541] Length = 361 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI+D+ +G + S++ ++I+ + L+ + +Y + + +L Sbjct: 3 EKTEKPTDKKIKDSAKKGQSFKSKD--TVAAIVLVVGALVIDGAASLYELGGLMKRILLH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 +++ LL S LV+P L+ + G L+Q L +K F Sbjct: 61 PYDIHIDN------LLWQFSKIFLSLVLPILIACFLSGTIVSLLQSRFRLATEAIKIDFT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ G K+I+S+N+L +K+ + +++ + + ++ Sbjct: 115 KLNPIAGFKKIFSLNSLKELIKAILYLLVFSISAATFFVVWRQEIFMLYRTTINGMMSSW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + V+D + + LKM KQE+K E K + G+P IK+ +K Sbjct: 175 VTLCILFVFVFLAVAVFIVVIDAIAEFFLFIKNLKMEKQEVKKEFKDNEGDPHIKSARKG 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + ++ +T I+ NPTH A+ + Y P L+AK + + AK + K A Sbjct: 235 LHQEILSEEVKSNVRNSTFIMANPTHIAMLIYYDSNIAPLPFLMAKMRGVQAKAIIKYAQ 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 + +P+ + LAR +++ +S I ++V Q+I + ++ Sbjct: 295 QQGVPVVRDIILARQIWRTYKKDSFIDDQGLQSVMQIITWLIRVEL 340 >gi|310823551|ref|YP_003955909.1| type III secretion protein, flhb/hrpn/yscu/spas family [Stigmatella aurantiaca DW4/3-1] gi|309396623|gb|ADO74082.1| Type III secretion protein, FlhB/HrpN/YscU/SpaS family [Stigmatella aurantiaca DW4/3-1] Length = 339 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 10/338 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTE P++K++ DA +G P SR S ++ L ++ + G+ + ++ Sbjct: 2 SKTEKPTAKRLRDARRKGQLPRSRLLSSSATTLGGVLGFTAWAPEGVERLRQWTAHVMRG 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + L P L ++ + L LN+ HV P+ + Sbjct: 62 QGTLEGWEAG---------GWLVLGLSGPALGGALVASLAVSLAVAGVGLNMEHVAPNLE 112 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R+S G KR+ S+ V +K+ + ++ ++ + E L + L H Sbjct: 113 RISPFAGWKRLLSVRAGVEGLKALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVHL 172 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +L+ + + L D + + + L MS++E+K E ++S G+P K ++K+ Sbjct: 173 LDRLEPLLLRLSGCLLLLGGADYALARARHFKDLCMSREEVKREYQESEGDPRHKAQRKA 232 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R + +A+ ++ NPTH A+ALRY E +AP LVAK Q A +R A Sbjct: 233 LHRQLAQGGSARGVRKASAVVINPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEAQ 292 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 IP+ + LARSL + IP Y+A A ++ Sbjct: 293 RRGIPVVRDVPLARSLI-SYDVGEQIPEELYQAAAAVL 329 >gi|170737797|ref|YP_001779057.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] gi|169819985|gb|ACA94567.1| type III secretion exporter [Burkholderia cenocepacia MC0-3] Length = 343 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 159/348 (45%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + P++K++ +A +G+ P S E + + + L V + Sbjct: 1 MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGALFARVQA 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + + + L+ + + L + + G+ + +Q V+ Sbjct: 55 LFRLVFDAVG--AADPSARLAALIDGAARDWATLSAQIVAAGLQAGLLAGFVQVGGVMAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ + Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLMKTALLVATLGWLIVESLDPSVQSGFTR 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ A Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAA 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++ ++A + P LA++L++ P N I P ++AVAQL+ Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338 >gi|15042145|gb|AAK81926.1|AF292566_10 RscU [Pseudomonas fluorescens] Length = 365 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 70/344 (20%), Positives = 163/344 (47%), Gaps = 7/344 (2%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 K S+KK+ D +G S++ + ++ A LF + + + Sbjct: 2 SDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLL 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L+ TQ + ++F + S + +++ + + + S +Q + +K Sbjct: 62 PLSRLTQPFTRALEEVLFEGMTVFFSFALVMV---GVAITTKLISSWMQFGLLFAPETLK 118 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F R++ +K+++S L+N + S K L+ +I+ + + + T+++ +++ S Sbjct: 119 LDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLDTLINLATSDLQSY 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + R +L + L + L ++D+ H + +++M++ E+ E K G+P +K Sbjct: 179 ILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238 Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +++S+A + + + + +++ NPTH+A+AL Y + P+LV+KG + A+ Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEAR 298 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + + A ++P+ + LAR+L+ + ++IP +AVA + Sbjct: 299 TLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLRAVALI 341 >gi|229588264|ref|YP_002870383.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360130|emb|CAY46987.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 365 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 163/344 (47%), Gaps = 7/344 (2%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 K S+KK+ D +G S++ + ++ A LF + + + Sbjct: 2 SDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLL 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 L+ TQ + ++F + S + L++ + + + S +Q + +K Sbjct: 62 PLSRLTQPFTRALEEVLFEGMTVFFSFALLMV---GVAITTKLISSWMQFGLLFAPETLK 118 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 F R++ +K+++S L+N + S K L+ +I+ + + + T+++ +++ S Sbjct: 119 LDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLGTLINLATSDLQSY 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + R +L + L + L ++D+ H + +++M++ E+ E K G+P +K Sbjct: 179 ILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238 Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +++S+A + + + + +++ NPTH+A+AL Y + P+LV+KG + A+ Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEAR 298 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + + A ++P+ + LAR+L+ + ++IP +AVA + Sbjct: 299 TLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLRAVALI 341 >gi|257487237|ref|ZP_05641278.1| type III secretion component protein HrcU [Pseudomonas syringae pv. tabaci ATCC 11528] gi|238577784|gb|ACR46695.1| HrcU [Pseudomonas syringae pv. tabaci] gi|331009149|gb|EGH89205.1| type III secretion component protein HrcU [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 359 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 150/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ ++ L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S N++N + S +K + +G + + + ++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILHVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LSHEILNQEPSAAPHPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|71737972|ref|YP_273541.1| type III secretion component protein HrcU [Pseudomonas syringae pv. phaseolicola 1448A] gi|289623686|ref|ZP_06456640.1| type III secretion component protein HrcU [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647640|ref|ZP_06478983.1| type III secretion component protein HrcU [Pseudomonas syringae pv. aesculi str. 2250] gi|42562005|gb|AAS20447.1| HrcU [Pseudomonas syringae pv. phaseolicola] gi|71558525|gb|AAZ37736.1| type III secretion component protein HrcU [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322958|gb|EFW79048.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. B076] gi|320329919|gb|EFW85907.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] gi|330871290|gb|EGH05999.1| type III secretion component protein HrcU [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330984961|gb|EGH83064.1| type III secretion component protein HrcU [Pseudomonas syringae pv. lachrymans str. M301315] Length = 359 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 150/347 (43%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ ++ L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S N++N + S +K + +G + + + ++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + A A +++ NPTHYA+AL Y E P++ KG++ A + Sbjct: 240 LSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|225164042|ref|ZP_03726327.1| type III secretion exporter [Opitutaceae bacterium TAV2] gi|224801348|gb|EEG19659.1| type III secretion exporter [Opitutaceae bacterium TAV2] Length = 369 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 85/351 (24%), Positives = 165/351 (47%), Gaps = 2/351 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D D KTE PS K++ +A G + E + + A L G V Sbjct: 1 MAEQD-QDQKTELPSEKRLSEAYERGQFAKTPELGIVFMLAAAFGALSMACEDGARRVAE 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + ++ + A L P ++ + + S IQ + Sbjct: 60 YATGIFEQLHTVRISSGLVPAPVAMGAVTFAGAL-APLMIASVGAALLSGGIQTGFRVTP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++++ G R++S N LV+ F+K+ ++ + ++ L Sbjct: 119 KALGFKPEKLNPVTGFGRVFSKNTLVHGGIDFLKVSVIAFSLWLAARTLLGDPLFTAPVE 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + ++ +L +LL + + + + + + + +L M++QE+K+E +QS G+ Sbjct: 179 TAYLGEFIHRSLMALLARLLLAMGIIAAISYAYEWFKTHRELMMTRQEVKEERRQSDGDA 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K+ + +AR +R +M+ A A +++TNPTHYA+AL+Y + + APV++AKG +A Sbjct: 239 LVKSALRRMARRLMRRQMLAAVPTADVVVTNPTHYAVALKYERGIDKAPVVLAKGDRRLA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++ IA EH +P E+ ++AR LF + IP Y+AVA ++ +Y Sbjct: 299 LRIKAIAAEHEVPTVEDRAVARLLFATGEVGKPIPGELYQAVAGILAMVYR 349 >gi|167840287|ref|ZP_02466971.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 360 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 78/332 (23%), Positives = 160/332 (48%), Gaps = 4/332 (1%) Query: 19 IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78 ++ A +G S++ + ++ A + L S +T + L + Sbjct: 14 LKTAREKGQVAKSKDVADAVTLAAAIGVLTAGESMLTGGLTRAIRTALDFVHGER--TPQ 71 Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ SA+ ++P + ++ G+ S Q ++ L V P F ++ GIKR Sbjct: 72 ATLAALHDLAASAALTMLPFVAAAIVAGVASQAPQAGFMITLEPVMPKFDAINPMAGIKR 131 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 I+S+ +L+ +K VK I++ +I +T + ++ + + + + K++ + Sbjct: 132 IFSLKSLLELVKMIVKAIVLACVIWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLVGV 191 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257 + L +A D + + +M+K+E K E K+S G+P K ++ +AR Sbjct: 192 VALVVAVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAP 251 Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 + +A +++ NPTHYA+A+RY E+ P ++ K + A +R+ A+ +PI Sbjct: 252 PRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDAGALALRRHAHALGVPIVGN 311 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 PS+AR+L++ V ++AIP ++ VA ++ + Sbjct: 312 PSVARALYR-VERDAAIPEELFETVAAILRWV 342 >gi|332559798|ref|ZP_08414120.1| FlhB2 [Rhodobacter sphaeroides WS8N] gi|332277510|gb|EGJ22825.1| FlhB2 [Rhodobacter sphaeroides WS8N] Length = 359 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 172/344 (50%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D ++K PS +K+E+A +G P S++ ++ L + + Sbjct: 3 DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LL A + + L +A V+P LL + G+ L QR V+ + + Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P +R+S G++ + LV+F+KSFVK++LVG ++ + + + P Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSDDIFGLLWMEPKIA 182 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + A E +PI +P AR+L V I I P Y+AVA + Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346 >gi|221640820|ref|YP_002527082.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides KD131] gi|221161601|gb|ACM02581.1| Type III secretion exporter [Rhodobacter sphaeroides KD131] Length = 359 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 172/344 (50%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D ++K PS +K+E+A +G P S++ ++ L + + Sbjct: 3 DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LL A + + L +A V+P LL + G+ L QR V+ + + Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P +R+S G++ + LV+F+KSFVK++LVG ++ + + + P Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSDDIFGLLWMEPKIA 182 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + A E +PI +P AR+L V I I P Y+AVA + Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346 >gi|268592372|ref|ZP_06126593.1| type III secretion system protein BsaZ [Providencia rettgeri DSM 1131] gi|291312158|gb|EFE52611.1| type III secretion system protein BsaZ [Providencia rettgeri DSM 1131] Length = 373 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 153/346 (44%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D+ +G + S++ ++I+ + + +Y + + + S Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKD--SVAAIVLVVSAFVIEGVSSLYELGGLMRKIFLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 T+ K++ LL +V+P L + G L+Q L +K F Sbjct: 61 PTEIKID------ALLWQFFTIFLSIVLPVLFTCFLSGTIISLLQSRFRLASEAIKLDFT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ G K+I+S+N+L +K+ + +I+ I + + + ++ Sbjct: 115 KLNPIAGFKKIFSLNSLKELIKAILYLIVFIISILVFFIVWRKDIFMLYRTMINGMISQW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++ L + ++D + + LKM KQE+K E K + G+P IK+ ++ Sbjct: 175 VSLCVTFIVVFLAVALIIILVDAIAEFFLYIKNLKMEKQEVKKEYKDNEGDPHIKSARRG 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + ++ +T ++ NPTH AL + Y P L +K + AK + K A Sbjct: 235 MHQELLSEEVKSNVRNSTFVMANPTHIALLIYYDSNIAPLPFLFSKSKGSQAKAIIKYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 + +P+ + LAR +++ +S I + V Q+I + ++ Sbjct: 295 QQGVPVIRDIVLARQIWRSYKNDSFIDEKGLEDVMQIISWLIRIEL 340 >gi|218193976|gb|EEC76403.1| hypothetical protein OsI_14046 [Oryza sativa Indica Group] Length = 324 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 136/245 (55%) Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + D + I+ + L A ++P + ++ + S ++ V + ++P F Sbjct: 8 FDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVALVSPVMLGGLVFSGKSLQPKFS 67 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ GI +++S +K+ +K +L+G+ L ++ M+ IS +P + + +A Sbjct: 68 KLNPLPGIAKMFSAQTGAELLKAILKSVLMGSSAGFFLWYHWPEMMRLISESPLTAMSNA 127 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V ++++L I + D+ + + + KL+MS+Q+I+DE KQ G+P +K R + Sbjct: 128 LNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQMEGDPHVKGRIRQ 187 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + R+ R +MME +A +I+TNPTHY++ALRY + + AP +VAKG LIA ++R+I Sbjct: 188 MQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGAGLIALRIREIGT 247 Query: 309 EHNIP 313 E+ +P Sbjct: 248 ENRVP 252 >gi|77464899|ref|YP_354403.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides 2.4.1] gi|77389317|gb|ABA80502.1| flagellar biosynthesis pathway, component FlhB [Rhodobacter sphaeroides 2.4.1] Length = 359 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 172/344 (50%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D D+K PS +K+E+A +G P S++ ++ L + + Sbjct: 3 DGEDDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LL A + + L +A V+P LL + G+ L QR V+ + + Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P +R+S G++ + LV+F+KSFVK++LVG ++ + + + P Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSDDIFGLLWMEPKIA 182 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + A E +PI +P AR+L V I I P Y+AVA + Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346 >gi|300982207|ref|ZP_07175919.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS 200-1] gi|300307277|gb|EFJ61797.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS 200-1] Length = 247 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 127/215 (59%) Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++S +K+ +K ILVG++ L ++ M+ ++ +P + + +A V ++ Sbjct: 1 MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 60 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 ++L + + D+ + KL+MS+Q+I+DE KQS G+P +K R + + R+ R +M Sbjct: 61 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 120 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 M +A +I+ NPTHY++AL+Y + + AP +VAKG L+A ++R+I E+N+P E P Sbjct: 121 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 180 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L++ I IP Y AVA+++ ++ K Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215 >gi|325527471|gb|EGD04805.1| flagellar biosynthesis pathway component [Burkholderia sp. TJI49] Length = 343 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 153/340 (45%), Gaps = 4/340 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + P++K++ +A +G+ P S E + I L + + ++ + Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETISSACFAGVCIALAVGIGALFARLQALFRLVFDA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A + + I L+ + + L + ++ G+ + +Q V+ + + P Sbjct: 63 AG--AADPSARIAVLIDGAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLMPQLS 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ EG+K ++S+ NLVN K +K L+ + + E+ + P SIL Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTTLLVATLGWVIVESLDAAVQSGFTRPISILALI 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++DI ++ K+KMS E++ E K+ G+P I+ +++ Sbjct: 181 VKLLMLLFGWAALIYIVMALIDIVHQRREFNQKMKMSIDEVRREHKEDEGDPHIEAKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A Sbjct: 241 LAREAQFAALPDRIGFASVVVYSP-RVAVALYYG-GVGTLPWVLARGEGEAAERIVRLAR 298 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + P LA+SL+ P N I ++ VAQL+ Sbjct: 299 DALRPTLANAGLAQSLYDTTPENGTIQQQHFREVAQLLKW 338 >gi|126463741|ref|YP_001044855.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC 17029] gi|126105405|gb|ABN78083.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17029] Length = 359 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 173/344 (50%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 D ++K PS +K+E+A +G P S++ ++ L + + Sbjct: 3 DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGEIGST 62 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 LL A + + L +A V+P LL + G+ L QR V+ + + Sbjct: 63 LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P +R+S G++ + LV+F+KSFVK++LVG ++ + +L + P Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSDDILGLLWMEPKIA 182 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 L F + + L+++++ + ++D W + + +MS+QE+ +E K + G+P +K Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +++ A ++M++ ++A +++ NPTHYA+ALR+ + + APV VAKG + +A ++R Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + A E +PI +P AR+L V I I P Y+AVA + Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346 >gi|238787480|ref|ZP_04631278.1| Type III secretion protein, YscU/HrpY family [Yersinia frederiksenii ATCC 33641] gi|238724267|gb|EEQ15909.1| Type III secretion protein, YscU/HrpY family [Yersinia frederiksenii ATCC 33641] Length = 321 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 137/304 (45%), Gaps = 1/304 (0%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LF 102 ++ L+ +F Y++ L+ S+ + + I + + + ++ L Sbjct: 1 MLVLVAYFLLTGYTLIDQASALIRSSIHQLQQPIGMALMRIGTQCMEVFIHIMGILGGAL 60 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162 ++ + S + Q P+L V+ + ++ K+++S+++L KS +K+ ++ I Sbjct: 61 VLMTLLSGIAQVGPLLATKAVEFKGEHINPINNAKQLFSLHSLFELSKSLLKVGVLTLIF 120 Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 L + + + +L ++ +++D + + +L Sbjct: 121 GYLLIRYAPSFGYLAYCGSSCAIPVFTTLMSWILGALIACYVVFSLMDYSFQRYNTMKQL 180 Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282 KMS E+K E K S G+P IK +++ + + + R+T ++ NPTH+A+ L Y Sbjct: 181 KMSHDEVKREHKDSDGDPHIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYH 240 Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 + P+++ KG A + KIA + IP+ E +LAR+L + V + IP ++ V Sbjct: 241 ADDAPLPIVIEKGTGERAALIVKIAEQQGIPVVENITLARALHRDVDCGNTIPESLFEPV 300 Query: 343 AQLI 346 A ++ Sbjct: 301 AAIL 304 >gi|292487274|ref|YP_003530146.1| surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] gi|292900354|ref|YP_003539723.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200202|emb|CBJ47330.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552693|emb|CBA19738.1| Surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] Length = 371 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 139/326 (42%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ D+ +G S++ ++L YL + S TS ++L Sbjct: 3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L D LT L L +P + + + G L+Q + +K +F+ Sbjct: 61 GDKISLNDF------LTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+K+I+S+ + +KS +++ + + + + + ++ Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K +++ + + A + ++D Y + +KM K E+K E K+S GNP IK ++ Sbjct: 175 ITLTIKAVMVFIGWSAFVLIIDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKGARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + M A + +++ NPTH A+A+ + P + + N+ AK A Sbjct: 235 AHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKAAIAYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 + IP+ L R L+ +S I Sbjct: 295 KIGIPVVRYIPLTRRLYHTYSQHSFI 320 >gi|82470755|gb|ABB77407.1| HrcU [Pantoea stewartii subsp. stewartii] Length = 360 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 162/347 (46%), Gaps = 9/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK++DA +G P S++ + ++ G+ + + + + L Sbjct: 3 EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVMALDDVGMQKLQALMMLPLMR 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + +S + L S + + + I IQ P+ +KP F Sbjct: 63 LNQPFEQVLSELA---GSALLIVSTFFGITVAVAALLRIIGGWIQYGPLFATEALKPDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ ++++S+ L + + S +K + TI + L+ + ++ + +S Sbjct: 120 RLNPVNQFRQMFSVKKLTDMLSSMLKAAAICTIFILVLSTDLESLSRLAYGDLNSFWPAV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +V LL + +T+LD G + + + +MS Q+I+DE KQS G+P +K + + Sbjct: 180 EVLLTRVSRQTLLTLLIMTLLDFGLQKYYFLKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239 Query: 249 IARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 +A+ + + E +A +++ NPTHYA+AL Y P ++ KG++ AK + Sbjct: 240 VAQELLNAPVQAVKREPLEKADLLLVNPTHYAVALYYRPELTPLPRIICKGEDSDAKTLI 299 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A + IP+ LAR+L+ Q IP +AVA++ Y++ Sbjct: 300 VRAQQAKIPVIRFIWLARTLY-QSQEGQLIPRHTLQAVARV-YRVLR 344 >gi|304321150|ref|YP_003854793.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis HTCC2503] gi|303300052|gb|ADM09651.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis HTCC2503] Length = 355 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 168/353 (47%), Gaps = 2/353 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+EN K+ + ++I+ A +G+ S E +F+ L L+ LL F S ++ + Sbjct: 1 MAENQDEAEKSHEATPERIKQARQKGDVAQSPEVLVFARYLGILVALLGFVSALAMNMAT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L+V +A + +S L S++ + + I + Q+ V Sbjct: 61 SLNVFMARPFEASARLMSDADPLEGF--GSSALFFFALMAAPIALVIAGLIAQQALVFAP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 N +KP +++ + K+ + L +F+++ VKI +V + + + + A Sbjct: 119 NKIKPDLNKLNPVKNAKQKFGKAALTDFVRNTVKITIVMVVGMVIGLAQTGRLTASVGAP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + R ++I ++ A +D+ + Q+ +LKMS+QE+KDE K + G+P Sbjct: 179 PGLLAEELAGLARIMVITGVILAAIAAGIDLPIKWSQYRERLKMSRQELKDETKSTEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ ++ AR +++ + A +++ NP HYA+AL++ + + P +AKG + IA Sbjct: 239 AQRSERQKRAREIAQNRQLLDVPDADVVVVNPEHYAVALQWNRHRGEVPRCIAKGVDAIA 298 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R IA E +P++ + ARSL+ V + I Y+AVA I + Sbjct: 299 LRIRNIADEAGVPLYRDVQTARSLYAVVEVGEEIRYEHYEAVAAAIRFADKLR 351 >gi|312171382|emb|CBX79641.1| Surface presentation of antigens protein SpaS [Erwinia amylovora ATCC BAA-2158] Length = 371 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 139/326 (42%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ D+ +G S++ ++L YL + S TS ++L Sbjct: 3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L D LT L L +P + + + G L+Q + +K +F+ Sbjct: 61 GDKISLNDF------LTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+K+I+S+ + +KS +++ + + + + + ++ Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K +++ + + A + ++D Y + +KM K E+K E K+S GNP IK ++ Sbjct: 175 ITLTIKAVMVFIGWSAFVLIMDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKGARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + M A + +++ NPTH A+A+ + P + + N+ AK A Sbjct: 235 AHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKAAIAYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 + IP+ L R L+ +S I Sbjct: 295 KIGIPVVRYIPLTRRLYHTYSQHSFI 320 >gi|3282784|gb|AAC25072.1| HrcU [Pseudomonas syringae pv. phaseolicola] Length = 359 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 149/347 (42%), Gaps = 7/347 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ ++ L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVISEITLGLADDSVDRLQALLALSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S N++N + S +K + +G + + + ++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239 Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + A A +++ NPTHYA+AL Y E P++ KG++ + Sbjct: 240 LSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEGLALIA 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 A + IP+ + L R+L++ + IP +AV + + Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345 >gi|254575135|gb|ACT68036.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 365 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 147/347 (42%), Gaps = 14/347 (4%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLL 66 KTE P+SKK +D+ +G S++ +L + +L F P I T L Sbjct: 3 EKTEQPTSKKRKDSAKKGQTFKSKDVITTVILLVGIYFLAHAVSFGPFISFYTHLLQYTT 62 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 L D++ I F L +P + + + G + L+Q L +K + Sbjct: 63 RPGMGVFLLDLARIFFTL----------ALPFIAVCTLVGFAATLLQTGFTLATEAIKLN 112 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 FK ++ EG+K+I+S+ + +KS +++ + ++ L A+ ++ Sbjct: 113 FKALNPVEGVKKIFSMRTVKELVKSLCYLVVFAATCHSLIQQDLRQALTLYRADMPGLVA 172 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 K +++ + + + + D+ Y + +KM K E+K E K+S GNP IK+ + Sbjct: 173 VWVALALKAVMVFIAWSIFVLLADLLVEYFLHFKDMKMDKHEVKQEHKESDGNPQIKSAR 232 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + + M A + +++ NPTH A+A+ + P + + NL AK Sbjct: 233 RRTHQDLLSGEEMAAVRNSEVVLANPTHIAMAVYFNPEVASLPFIALRCTNLKAKAAIAY 292 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK--AVAQLIYKIYH 351 A + +P+ L R L+ S I Y V ++ + Sbjct: 293 AEKIGVPVVRNIPLTRRLYHTYSQYSFISLEDYVLMDVMDVLIWLRQ 339 >gi|254250203|ref|ZP_04943523.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] gi|124876704|gb|EAY66694.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia cenocepacia PC184] Length = 343 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 159/348 (45%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + P++K++ +A +G+ P S E + + + L V + Sbjct: 1 MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + + L+ + + L + ++ G+ + +Q V+ Sbjct: 55 LFRLVFDAVGAADP--AARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGGVMAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ + Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDPSVQSGFTR 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ A Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAA 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++ ++A + P LA++L++ P N I P ++AVAQL+ Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338 >gi|213420820|ref|ZP_03353886.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 221 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 117/198 (59%) Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 LVG + L ++ M+ ++ +P + +A V ++++L + + D+ + Sbjct: 2 TLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQI 61 Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275 KL+MS+Q+I+DE K+S G+P +K + + + R+ + +MME +A +I+TNPTHY Sbjct: 62 FSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHY 121 Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL+Y + + AP +VAKG LIA ++R+I EH +P E P LAR+L++ I IP Sbjct: 122 SVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIP 181 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y AVA+++ ++ K Sbjct: 182 GQLYAAVAEVLAWVWQLK 199 >gi|83646791|ref|YP_435226.1| flagellar biosynthesis pathway protein FlhB [Hahella chejuensis KCTC 2396] gi|83634834|gb|ABC30801.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis KCTC 2396] Length = 342 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 86/326 (26%), Positives = 166/326 (50%), Gaps = 2/326 (0%) Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88 S+E S ++ A + L S L A A + I+ + + +S Sbjct: 2 AKSQEVSHVFALAAGALLLWSVSQDLATRFFSLCQKLFADAASVDFDIITAKAWGIWIVS 61 Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148 S ++ P L++ M+ G+ ++Q PV + + +KP KR++ G KR++SI L Sbjct: 62 -EVSWILSPLLVVMMVIGVLCSIVQTGPVFSFHPIKPDIKRINPITGFKRLFSIKILFEL 120 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 +K+ +K+ L+G+++ +L + + + + L ++ + + + + Sbjct: 121 VKNLIKLALLGSVLYWALAGLMPDLFGLTAKSAATALPVFIGYAAGIIFKLTAALLLIAL 180 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA-TSRATI 267 +D+ ++ ++ ++M+K+E+KDEIK+ G+P I+ ++K + R + A A + Sbjct: 181 IDMLFTRWEFMRNMRMTKKEVKDEIKRREGDPHIRAKRKELERELRKRSGSAASVPEADL 240 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 IITNP HYA+ ++Y + AP + KG + +AK +R +A +H +PI ++P LAR LFK+ Sbjct: 241 IITNPEHYAVVVKYDAKKMAAPTVTGKGGDAMAKHLRDLARQHQVPIIQDPPLARYLFKK 300 Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353 I S IP + VA+ + + Y K Sbjct: 301 TEIGSMIPEDAFVGVARALRRAYQIK 326 >gi|238752378|ref|ZP_04613856.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC 43380] gi|238709419|gb|EEQ01659.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC 43380] Length = 320 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 132/307 (42%), Gaps = 3/307 (0%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 +L + Y L + I + + + Q + ++HI +V Sbjct: 1 MLVLVAYFLVTGNTLIEQIGALFRSAIEQLPQPLIMALAHIG---GECVAVLFHIVGILG 57 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 ++ I S + Q P+L V+ + ++ K+++S+ +L KS +K+ ++ Sbjct: 58 GALILVTILSCVAQVGPLLATKAVEFKGEHINPINNAKQLFSMRSLFELTKSLLKVGVLT 117 Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219 I L + + + +L +L ++LD + + Sbjct: 118 LIFGYLLMHYATSFGYLTYCGSSCAIPVFATLMSWLLGALLACYVVFSLLDYSFQRYNTM 177 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 +LKMS+++IK E K S G+P IK +++ + + R+T ++ NPTH+A+ L Sbjct: 178 KQLKMSREDIKREHKDSDGDPEIKQKRRQLQHEVQSGSFAKNVQRSTAVVRNPTHFAVCL 237 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 Y + PV++ KG A + K+A + +P+ E +LAR+L + V IP + Sbjct: 238 FYHADDAPLPVVIEKGAGERAALIIKLAEQQGVPVIENITLARALHRDVACGDTIPEPLF 297 Query: 340 KAVAQLI 346 + VA ++ Sbjct: 298 EPVAAIL 304 >gi|212711698|ref|ZP_03319826.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM 30120] gi|212685800|gb|EEB45328.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM 30120] Length = 361 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI+D+ +G + S+++ ++ + +Y++ + +L + Sbjct: 3 EKTEKPTDKKIKDSAKKGQSYKSKDSIAAIVLVTGAFVV--DGMSSLYNLGGLMKKILLN 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++D LL S +V+P L+ + G L+Q L VK F Sbjct: 61 PNDIYIDD------LLWQFSKIFMSIVLPILIACFLSGAIISLLQSRFRLATEAVKLDFT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ G K+I+S+N+L F+K+ + +++ T + + + Sbjct: 115 KLNPIAGFKKIFSLNSLKEFIKAILYLLVFSVSATTFFIVWRHEIFMLYRTTINGMTTQW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++D + + LKM KQE+K E K + G+P +K+ +K Sbjct: 175 VTLCIIFVFVFLAVAVIIVLVDAIAEFFLFIKNLKMEKQEVKKEHKDNEGDPHLKSARKG 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + ++ + +T ++ NPTH A+ + Y + P L+ K + L AK + K A Sbjct: 235 LHQEILSEEVKSSIQNSTFVMANPTHIAMLIYYDANISPLPFLMFKTRGLQAKAVIKYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 E NIP+ + LAR +++ +S I + V Q++ + ++ Sbjct: 295 EQNIPVVRDIILARQIWRNYKKDSFIDEQGLQDVMQIVTWLIRIEL 340 >gi|188534807|ref|YP_001908604.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis Et1/99] gi|188029849|emb|CAO97730.1| export protein for peptides using the type III secretion system [Erwinia tasmaniensis Et1/99] Length = 371 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 139/326 (42%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ D+ +G S++ +++LA + YL + + S ++L Sbjct: 3 EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAI--NFHPFISFYSLVLRE 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + L D L L L +P + + + G L+Q + +K +FK Sbjct: 61 GDKISLNDF------LVELMRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFK 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ +G K+I+S+ + +KS + +I+ + + + + + ++ Sbjct: 115 ALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAISIYNGSIDVLISVW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K +++ + + + ++D Y +KM K E+K E K+S GNP IK ++ Sbjct: 175 TALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + M A + +++ NPTH A+A+ + P + + N+ A+ A Sbjct: 235 AHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 + IP+ LAR L+ S I Sbjct: 295 KIGIPVVRYIPLARRLYHNYSQYSFI 320 >gi|300871796|ref|YP_003786669.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli 95/1000] gi|300689497|gb|ADK32168.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli 95/1000] Length = 404 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 6/353 (1%) Query: 6 APDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +TE P+ +K A E G S E + + + + +++ Sbjct: 45 EDEGRTELPTERKKRRAREEEGRVVNSVEINQTLVLGVTTVLIALLIGYLTNTLSQFFVD 104 Query: 65 LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 +L + + + + + L ++ LL ++ G+G L Q + + Sbjct: 105 ILNRISNADATMTMDGLPDIFIEIVLLIAKTAGIVLLTALIIGVGVNLAQTQFLFTTKKL 164 Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP+FKR++ +R++ S NL+N K K+I++G + ++ + + + Sbjct: 165 KPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVIGILTFTTINGRRNDLFNMVHME 224 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + FF V +++ +++F+ + V+D + Q+ + LKM+K E+K+E K+ G+P Sbjct: 225 LAQAMNVFFFIVLEMIGKVMIFMIIVAVVDYYFQRKQYINSLKMTKHEMKEEFKEMEGDP 284 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++KN+ + +AR + M+++ A +IITNPTH+A+AL+Y Q+ + AP++ AKG + IA Sbjct: 285 LVKNQLQEMARKIVSRTMLKSVPEADVIITNPTHFAVALKY-QSGDYAPIVTAKGVDNIA 343 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA EH + I E LAR L+ V I IP + V++++ ++Y + Sbjct: 344 LKIKEIAKEHEVEIVENKPLARELYYNVDIGQYIPEKLFHVVSRILGEVYRIR 396 >gi|107025878|ref|YP_623389.1| type III secretion exporter [Burkholderia cenocepacia AU 1054] gi|116692938|ref|YP_838471.1| type III secretion exporter [Burkholderia cenocepacia HI2424] gi|105895252|gb|ABF78416.1| type III secretion exporter [Burkholderia cenocepacia AU 1054] gi|116650938|gb|ABK11578.1| type III secretion exporter [Burkholderia cenocepacia HI2424] Length = 343 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 159/348 (45%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + P++K++ +A +G+ P S E + + + L V + Sbjct: 1 MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + + + L+ + + L + ++ G+ + +Q V+ Sbjct: 55 LFRLVFDAVG--AADPSARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGGVMAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ + Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTR 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAG 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++ ++A + P LA++L++ P N I P ++AVAQL+ Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338 >gi|284006885|emb|CBA72154.1| type III secretion component protein SctU [Arsenophonus nasoniae] Length = 349 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 180/345 (52%), Gaps = 3/345 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTE P++KKI+DA +G S+E I+ L LL S I S L Sbjct: 2 SGEKTETPTAKKIKDARKKGQILKSKEIVSSCIIVILLSLLLSLSSFFIEHFLSLFAYLQ 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 S+ + IV + H++++ +I +L ++ S+L Q +L+ + +KP Sbjct: 62 DSSLLDFQTAKARIVPHIWHITINILLPIIIITILIIVL---SHLAQFGFLLSPSSLKPD 118 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 K ++ G K+I+S+ L+ F KS +K+I +G I+ + N I Sbjct: 119 IKHINPIAGAKKIFSLKILLEFFKSLLKVIFIGFIVWFVIKGNINFFFHLPKCGLKCIPI 178 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++ I+ +L + +++LD YH + +LKMSK+EIK E K+ GNP IK R+ Sbjct: 179 FIGQLLTQLTIICILGLIIISILDYCLEYHFYIKQLKMSKEEIKKEYKEMDGNPEIKGRR 238 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K + + + + + + ++++IITNPTH A+ +RYI+ E P++ K + +A+ +++I Sbjct: 239 KQLHKELLVNNIRKQVKQSSVIITNPTHIAIGIRYIKHETPLPIVTLKQTDALAQLVKRI 298 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 A + NIPI + LARSL+ + I+ IP + +A++++ + Sbjct: 299 AIQENIPIIQRIPLARSLYAEGIIDQYIPENTIETMAEVLHWLIQ 343 >gi|167589635|ref|ZP_02382023.1| type III secretion exporter [Burkholderia ubonensis Bu] Length = 343 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 152/340 (44%), Gaps = 4/340 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + PS+K++ +A +G+ P S E + + + L + ++ + Sbjct: 3 EKNQKPSAKRLREAREKGDVPKSAETISSAFFVGACVALAVGLGALFERLQGLFRLVFDA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A + + L+ + L + +M G+ + +Q V+ + + P Sbjct: 63 AGAADP--GARLAALVGSAARDWMTLSAEIVGAGLMLGLLAGFVQVGGVMAWSRLVPQLS 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ EG+K + S+ N+VN +K +K +L+ + + E+ + P SIL Sbjct: 121 RLNPAEGLKNMASLRNVVNLVKMLLKTVLLVATLGWLIVESLDPAVQSGFTRPMSILALI 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++DI +H++ K+KMS E++ E K G+P I+ +++ Sbjct: 181 VKLLMLLFGWAALVYVVMAIIDIVHQHHEFNKKMKMSIDEVRREHKDDEGDPHIQAKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +AR + + A++++ + A+AL Y P ++A+G+ A+++ ++A Sbjct: 241 LARELQYASLQDRIDFASVVVYSS-RVAVALYYG-GMGSLPWVLARGEGEAAERIVRLAR 298 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + P LA++L+ P N I P ++ VA L+ Sbjct: 299 DALRPTLANVGLAQALYDSTPENGTIQPRHFREVAALLKW 338 >gi|206563886|ref|YP_002234649.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092677|gb|AAL59406.1| BcscU [Burkholderia cenocepacia] gi|28394258|gb|AAO31733.1| BcscU [Burkholderia cenocepacia] gi|198039926|emb|CAR55904.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 343 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 158/348 (45%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + P++K++ +A +G+ P S E + + + L + + Sbjct: 1 MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARLQA 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + + + L+ + + L + ++ G+ + +Q V+ Sbjct: 55 LFRLVFDAVGAADP--AARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R++ EG+K ++S+ NLVN K +K L+ + + E+ + Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTR 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SIL + + L + ++DI H++ K+KMS E++ E K+ G+P Sbjct: 173 PVSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ +++ +AR + + A++++ +P A+AL Y P ++A+G+ A Sbjct: 233 HIQAKRRQLAREVQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAA 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++ ++A + P LA++L++ P N I P ++ VAQL+ Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFREVAQLLKW 338 >gi|313634400|gb|EFS00988.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL N1-067] Length = 303 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 147/258 (56%) Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148 + ++++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ LV Sbjct: 35 MEFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGLVEV 94 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 +K+ + I L+ + I ++ T++ + N L F + V + + L IA + + Sbjct: 95 VKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSLKQIFSLFKNVXLALFLVIAVIGL 154 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268 LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT + Sbjct: 155 LDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFV 214 Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + NPTH ++ +RY + ++ AP L+AKG++ +A +R++A +P+ LARS++ Sbjct: 215 VNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTT 274 Query: 329 PINSAIPPVFYKAVAQLI 346 + I YK V +++ Sbjct: 275 NPDEYIQEDLYKDVIEVM 292 >gi|238785152|ref|ZP_04629146.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri ATCC 43970] gi|238713967|gb|EEQ05985.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri ATCC 43970] Length = 332 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 138/314 (43%), Gaps = 5/314 (1%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 S E + ++ + Y L Y++ VL+ ++ + ++ + + L Sbjct: 3 KSVEITSGLQLVVLVTYFLLTG----YTLVEQAKVLIRDTIEQLHQPLTMALAHIGSECL 58 Query: 90 SASRLVIPGLL-LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148 + ++ L ++ I S Q P++ V+ + ++ K+++S+ +L Sbjct: 59 AVLLHIMGILGGALVLITIISGFAQVGPLMATKAVEFKGEHINPINNAKQLFSLRSLFEL 118 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 KS +K+ ++ I L ++ + + +L ++ ++ Sbjct: 119 TKSLLKVGVLTLIFGYLLMHYAASLGYLAYCGSQCAIPVFATLMGWLLGALIACYMVFSL 178 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268 +D + + +LKMS +E+K E K+S G+P IK +++ + + + RAT + Sbjct: 179 MDYAFQRYNTMKQLKMSLEEVKREYKESDGDPHIKQKRRQLQQEVQSGSFAKNVQRATAV 238 Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + NPTH+A+ L Y + PV++ KG A + K+A + IP+ E +LAR+L V Sbjct: 239 VRNPTHFAVCLLYHPEDAPLPVVIEKGHGERAALIIKLAEQQGIPVVENIALARALHHGV 298 Query: 329 PINSAIPPVFYKAV 342 IP F++ V Sbjct: 299 ACGETIPEQFFEPV 312 >gi|183600583|ref|ZP_02962076.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827] gi|188019860|gb|EDU57900.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827] Length = 367 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 157/346 (45%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI+D+ +G + S+++ ++ + + + ++ + + +L S Sbjct: 3 EKTEKPTEKKIKDSAKKGQSFKSKDSVAALVLVVSVYVIT--GTTSLFEIAGLMKRILLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + LL + ++ IP LL + G L+Q L +K F Sbjct: 61 PYNININ------ILLREFIGAFLKIAIPVLLACFISGAILSLLQSRFRLATEAIKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ GIK+I+S+N+L +K+F+ +I+ + + + + ++Y Sbjct: 115 KLNPISGIKKIFSLNSLKELIKAFLYLIVFSISAMVFFILWRHDIFLLYRSTINGVIYQW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++ L + ++D+ + + LKM KQE+K E K + G+P +K+ +K Sbjct: 175 VGLCATFVVVFLAVALFIILVDVVTEFFLFIKGLKMEKQEVKKEYKDNEGDPHLKSARKG 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + ++ +T ++ NPTH A+ + Y P L+ K L AK + + A Sbjct: 235 LHQEILSEEVKSNVRNSTFVMANPTHIAMLIYYNNDIAPLPFLLFKSHGLQAKMIVRYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 + +P+ + LAR +++ +S I + V ++I + ++ Sbjct: 295 QQGVPVVRDIPLARKIWRYYRKDSFIDEHGLQDVMRIINWLIRIEL 340 >gi|91791412|ref|YP_561063.1| type III secretion exporter [Shewanella denitrificans OS217] gi|91713414|gb|ABE53340.1| type III secretion exporter [Shewanella denitrificans OS217] Length = 352 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 169/349 (48%), Gaps = 8/349 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + ++K+E S K+ +A G S E + + +L L Y F + S + Sbjct: 2 SDEHKSEQASQYKLNEARKRGQLAKSMELNAWVLVLISLAYFYLFSESLAKELMSVISRY 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + + + + + + + L++P + ++ I ++ V + + P Sbjct: 62 LQILGSVDIRN--NFMLIAFDIFYPLAVLLVPFFSILVVASIVINVLLNGFVFSFEPLSP 119 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 F++++ +G+K+I+S NL F+K +K+ LV + ++ ++ S+L Sbjct: 120 KFEKLNPVKGLKKIFSKKNLFEFIKQTIKLFLVALCGYLLFYGVVERLIIASQSHVSSLL 179 Query: 186 YHAFFT-VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 A ++ +LL I L LD+ ++ + ++ MS +E+++E K+ G+P IK+ Sbjct: 180 GMALSQETLRLSFYLLLTIFPLIALDVLFTRWDFKKQMMMSHREVREEYKKKEGDPQIKS 239 Query: 245 RQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++K + + + + + A +II NPTH ++AL++ ++P++VA G ++ K + Sbjct: 240 KRKEVQKELAKKLIALGKVKEADVIINNPTHISVALKFDPLTMNSPIVVASGSGVLGKFI 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 R+IA +H++ SLAR L+KQ+ I +P ++ + IY K Sbjct: 300 RRIAVKHSLLQVTNISLARRLYKQLAIGQPLPAEYFDE----LAPIYRK 344 >gi|134294009|ref|YP_001117745.1| type III secretion exporter [Burkholderia vietnamiensis G4] gi|134137166|gb|ABO58280.1| type III secretion exporter [Burkholderia vietnamiensis G4] Length = 342 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 154/340 (45%), Gaps = 4/340 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K + P++K++ +A +G+ P S E + + + L + + ++ + Sbjct: 3 EKNQQPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A + + L+ + + L + ++ G+ + +Q V+ + + P Sbjct: 63 AGAADP--AARLAVLVDGAARDWALLSAQIVAAGLLAGLLAGFVQVGGVMAWSRLVPQLS 120 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ EG+K ++S+ NLVN K +K +L+ + + E+ + P SIL Sbjct: 121 RLNPAEGLKNMWSMRNLVNLAKMLLKTVLLVATLGWLIVESLDPSVQAGFTRPVSILALI 180 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L + ++DI H++ K+KMS E++ E K+ G+P I +++ Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 +AR + + A++++ +P A+AL Y P ++A+G+ A+++ ++A Sbjct: 241 LAREAQFAALPDRIGYASVVVYSP-RVAVALYYG-GIGSLPWVLARGEGEAAERIVRLAR 298 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 + P LA +L++ P N I ++ VAQL+ Sbjct: 299 DALRPTLANVGLAHALYETTPENGTIQQQHFREVAQLLKW 338 >gi|123443724|ref|YP_001007695.1| surface presentation of antigens protein SpaS [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090685|emb|CAL13561.1| putative type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 374 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 75/346 (21%), Positives = 149/346 (43%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D+ +G + S++ +++ + F +Y + S L +L S Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVSGAFAISGF--SSLYGLGSLLQRILLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +E LL L + V+P LL + G L+Q L VK F Sbjct: 61 PSDIGVE------ALLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G K+I+++ +L +K+F+ +++ T + + + ++ Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++ L + ++D + + LKM KQE+K E K + G+P IK+ ++ Sbjct: 175 AHLCITFIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHIKSARRG 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +T ++ NPTH A+ + Y P L+ K + L AK + A Sbjct: 235 LHQEILSEDVKSNVRSSTFVMANPTHIAMVIYYNGDIAPVPYLMMKTRGLQAKAVIAYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +P+ + +AR L++ +S I V +I + ++ Sbjct: 295 SQGVPVVRDIPVARQLWRNYCKDSFINDQGLDDVMHIINWLVRVEL 340 >gi|149179491|ref|ZP_01858040.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797] gi|148841678|gb|EDL56092.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797] Length = 323 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 152/314 (48%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 ++ +L+FF+ + S +L + + D ++ + + Sbjct: 1 GMMLATAAVLYFFAVRLSSDMKNLMEVSLTTPVWLRVDQPLLIERCESIIELFLEGTLVM 60 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 +++ + + ++Q ++ + ++ ++R++ EG KRI SI LV S KI L+ Sbjct: 61 MVVLFVSAVFLNIVQVGFMMTPDVLQLKWERLNPIEGAKRIISIRGLVKLGVSLGKISLL 120 Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 I + L + A P +IL F + ++ +++ L + L LD + + Sbjct: 121 VLIAVWFSYLVFPGFLGLMGAPPETILRDIFNSTIELGLLLALALIILGGLDYAFQKWKH 180 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 L MSKQEI++E+K G+P+I+ R++ R + + A ++ITNPTH ++A Sbjct: 181 EKDLMMSKQEIREEMKSMDGDPLIRQRRREAHRKLAMSQELSKVESADVVITNPTHISIA 240 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 ++Y APV+VAKG IA ++RKIA EH IPI E +LAR +++ V IP Sbjct: 241 IKYDPESMPAPVVVAKGAGEIAFQIRKIANEHGIPIIERKALARQMYRDVKTGQEIPFEL 300 Query: 339 YKAVAQLIYKIYHK 352 Y+ +++ +Y Sbjct: 301 YEVFVEIMAYVYSL 314 >gi|85060059|ref|YP_455761.1| surface presentation of antigens protein SpaS [Sodalis glossinidius str. 'morsitans'] gi|45504778|gb|AAS66868.1| SpaS [Sodalis glossinidius] gi|84780579|dbj|BAE75356.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 352 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 146/319 (45%), Gaps = 8/319 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ K++ DA +G A SR+ + +L + +L F S + S+ ++ Sbjct: 3 NKTEKPTPKRLRDAAKKGQAFKSRDVIIACMMLCGVCWLTSFTS--LESLMDLYRQMVVG 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 L + L +A ++++P + + ++ L+Q +L K +F+ Sbjct: 61 NFSLSLTAYRNA------LMFTALQILLPIIAMGIVASALPLLLQTGFMLATRAFKLNFQ 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ GIK+I+S+ + +K+ + + + I + + + + ANP I+ Sbjct: 115 ALNPTRGIKKIFSLRTAKDCVKALLYLAAFAIALMIVWRTHRQLLFEQLFANPQDIVAIW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ LL I + +LDI Y LKM KQE++ E+K+ G+P IK+R++ Sbjct: 175 RQLLMSLVLTCLLCIVCIVILDIVAEYFLHLRSLKMDKQEVRREMKEQEGDPEIKHRRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + +II NPTH A+ + + P + +N A +R A Sbjct: 235 AHMEILSEQTQADIKGSQLIIANPTHLAVGIYHNPDLTPLPFISVLERNQRALAVRDYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQ 327 + + + E+ LAR ++ Sbjct: 295 KVGVSVIEDVQLARRIYYT 313 >gi|255024132|ref|ZP_05296118.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL J1-208] Length = 288 Score = 258 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 85/292 (29%), Positives = 157/292 (53%), Gaps = 5/292 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L + ++++ + ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQPPK-----LANMESYSLFYVMEFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 F + + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K R Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 Q+SIAR ++ + + + AT ++ NPTH ++ +RY +T++ AP L+ KG++ Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGED 288 >gi|114762169|ref|ZP_01441637.1| flagellar biosynthetic protein FlhB [Pelagibaca bermudensis HTCC2601] gi|114545193|gb|EAU48196.1| flagellar biosynthetic protein FlhB [Roseovarius sp. HTCC2601] Length = 330 Score = 258 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 144/314 (45%), Gaps = 1/314 (0%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRL 94 ++ L L L + + + + + + + + + + Sbjct: 2 TAAAYLGLLATGLSIGGGAVLRLGEAMLPFVEHPEKLGSLFFNGMATAPAATVLGAVLKP 61 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 V+P L + + + R V + + P R+S E + Y L F+KSFVK Sbjct: 62 VLPWLAVPGAVVLCALFATRGLVFAPSRLAPKASRLSPMENARNKYGRRGLFEFLKSFVK 121 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214 + + ++ + L+ Y ++ + + ++L + + + +D W Sbjct: 122 LTVYSVVLGLFLSSRYDLIIGVLRGAAPDAAELMLNLMLQLLGIAAVVALCIGAVDYLWQ 181 Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274 + + +MS++E++DE K++ G+P+ K ++++ A+ + +MM RA ++I NP+H Sbjct: 182 RAEHLRRNRMSQKELRDEHKEAEGDPMFKQQRRARAQEIAQTQMMADVPRADVVIVNPSH 241 Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 YA+AL + + DAP+ VAKG + IA+++R++A + +P+ +P AR+L I I Sbjct: 242 YAVALSWSRKPGDAPICVAKGVDEIARRIREVAEDAGVPLHSDPPTARALHATTRIGEQI 301 Query: 335 PPVFYKAVAQLIYK 348 P Y+ VA I Sbjct: 302 APEHYRPVAAAIRF 315 >gi|254255060|ref|ZP_04948377.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] gi|124899705|gb|EAY71548.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa AUO158] Length = 392 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 69/344 (20%), Positives = 155/344 (45%), Gaps = 9/344 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +KTE + KK D+ G +R+A + +L + + I +V D+ Sbjct: 2 SAQSKTEEATPKKRRDSAERGQILKARDAVVACVMLCGVFVVSKMSLHEIGAVMIDMMQN 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + L ++ ++V P LL+ ++ L+Q VL +K Sbjct: 62 GFDVDTSS---------YVKSLLVACLKVVAPVLLVCILAAAVPSLMQSKFVLATKALKI 112 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 +F+ ++ G K+I+++ + +F+KS + +++ ++I N +L ++ H ++ Sbjct: 113 NFEALNPVRGFKKIFNLRTVKDFVKSLLYLVVFSVAVSIVWVRNKEKLLAQFYSDLHGVV 172 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + +++ L + +LD+ +L+M+K+E+K E K++ G+P IK R Sbjct: 173 GLWKDLMVDLVLTCLGCALVILILDVLVEMLIHRKELRMAKEEVKRERKENEGSPEIKGR 232 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +K + + + + + +II NPTH A+ + + + P++ +N A +R+ Sbjct: 233 RKEMHQELLSEQDKHDIQNSKMIIANPTHVAVGIYFNPSHLPYPLVSISERNQRALAVRR 292 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + +P+ + LAR ++K + + V +L+ + Sbjct: 293 YAEKIGVPVIVDVPLARQIYKSHKRYEIVSLDVLEPVVRLMVWL 336 >gi|262166221|ref|ZP_06033958.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223] gi|262025937|gb|EEY44605.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223] Length = 240 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 122/215 (56%) Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++ + + V +KS +K++LV + + + + ++HA + +++ Sbjct: 1 MFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLL 60 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 I + + +DI + Q ++LKM+KQE+KDE K + G P +K R + + R + +M Sbjct: 61 ISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRM 120 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 M A +A +IITNP H+++ALRY Q + APV++AKG + +A K+R+IA E++I I P Sbjct: 121 MAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAP 180 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 LAR+L+ + IP + AVAQ++ ++ K Sbjct: 181 PLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 215 >gi|238898600|ref|YP_002924281.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466359|gb|ACQ68133.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 349 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 76/322 (23%), Positives = 142/322 (44%), Gaps = 9/322 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ KK++D+ +G + +++ + +LA + YL+ F S S+L L Sbjct: 2 SSNKTEKPTQKKLKDSAKKGQSFKTKDFIIACLMLAGVQYLISFAS------FSELMFLY 55 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 E I + ++ +P LLL + L+Q +L +K + Sbjct: 56 KEIISFNFE--YDIHRYTISVLSIGFKIFLPILLLCIFCSALPSLLQTGFLLATKAIKLN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGTIITISLTENYFTMLDFISANPHSIL 185 ++ +G K+I+S+ + +KS + + ++ + T+ ++P+ I Sbjct: 114 LGALNPTKGFKKIFSLRTAKDAVKSVLYLGTFFVAVLVVWNTKRGVLFQQLHGSSPYEIT 173 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ +L L I + +LD Y LKM KQE+K E+K+ GNP IK R Sbjct: 174 MVWGQLLQSILWTCLGCIVIILILDALAEYFLHIKDLKMDKQEVKREMKEQDGNPEIKGR 233 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 ++ + + ++ + II NPTH A+ + P + N A +R Sbjct: 234 RRELHMEILSEQIKSDIKNSQCIIANPTHIAVGIYVNPDTVMMPFISVLETNQKALAVRA 293 Query: 306 IAYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + SLAR+++K Sbjct: 294 YAKKVGVPVIQNISLARAIYKN 315 >gi|317121832|ref|YP_004101835.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885] gi|315591812|gb|ADU51108.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885] Length = 477 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 156/330 (47%), Gaps = 2/330 (0%) Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED--ISHIVFL 83 G S + + +LA V L ++ D ++ L Sbjct: 88 GEVARSADLTAALLLLAAAALAGVLVPAAAREVARLTRHLWSTLPAGVPGDWTVADAAGL 147 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L+ P L+ G+ +Q + + V P ++R++ G++R+ S Sbjct: 148 GRVALLATLAAAAPLALVGWAVSAGAGFVQTGGLFQIGLVAPRWERINPLAGLQRLVSRR 207 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 LV +K+ VK+ ++ ++ +L + +L ++L A V ++ L Sbjct: 208 ALVELLKAPVKLAVLVAVLGPALVQAAGQLLAATGTPAEALLPAAARAVHGLMWRGALAY 267 Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATS 263 + + D + + + L+M+ QE K + K++ G+P+++ R + R R +M++ Sbjct: 268 LVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQRLRQRQRQLARRRMLQEVP 327 Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323 R +++TNPTH A+ALRY APV+VAKG ++A ++R +A H +P+ EEP+LAR+ Sbjct: 328 RVDVVVTNPTHVAVALRYDPARMGAPVVVAKGLGVLALRIRAVAEAHGVPVMEEPALARA 387 Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+K V + IPP Y AVA+++ ++ + Sbjct: 388 LYKAVEVGQEIPPALYVAVAEVLAFVWRLR 417 >gi|260775664|ref|ZP_05884560.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC BAA-450] gi|260608080|gb|EEX34249.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC BAA-450] Length = 352 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 140/338 (41%), Gaps = 7/338 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI+D+ G + + + + L+ + + + +++ + Sbjct: 3 EKTEKPTQKKIQDSRKRGQVAQTPDIPKLLACVLTFEVLVACSEWLMAELKTLVYMPITL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q ++ + H+ +VIP + + Q + +K F Sbjct: 63 FNQPFEHGFLSVLEVAKHVLFLFILIVIP---VSFFAALIGRWGQFGFLFAPEALKLDFN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +K+++S L + + K IL+ + I L + + + + A Sbjct: 120 KLNPFSQLKQLFSGQKLTEVLNNIFKSILIFVVFYILLNDLAHAVFKLPNLPLDRMWLAA 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V + LL + +LD +LKM KQE+K E K S G+P +K++++ Sbjct: 180 IDLFIYVARVCLLLLLAPAILDFALKKFFHLKQLKMDKQEVKQEFKDSEGDPFVKSQRRQ 239 Query: 249 IARSRIRHKMM---EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + + +++ NPTH+A+ L Y PV+ AKG++ A ++ + Sbjct: 240 LGMELVEGSPQTTNASMDEMDMLVVNPTHFAVGLHYNPGVTPLPVVGAKGKDREALELIQ 299 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 A +P+ LAR+L++Q + S I AVA Sbjct: 300 QADHSGVPVIRYVWLARTLYQQ-ELGSYINRDTLDAVA 336 >gi|170767115|ref|ZP_02901568.1| EscU protein [Escherichia albertii TW07627] gi|170124553|gb|EDS93484.1| EscU protein [Escherichia albertii TW07627] gi|315617516|gb|EFU98122.1| conserved hypothetical protein [Escherichia coli 3431] Length = 317 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 74/311 (23%), Positives = 144/311 (46%), Gaps = 3/311 (0%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 L + + + + ++ + S + L I I L + + Sbjct: 2 AAVQSLILFSFFSLYGASFFIDIVGLVNTAINSLNRPFLYAIREI---LGSVLNILLLYI 58 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +P L+ + + + + Q + + +KPS +++S++ +K I+S+ ++ KS K+ Sbjct: 59 LPISLIVFVGTVATGVSQTGFIFAVEKIKPSAQKISVKNNLKNIFSVKSIFELFKSVFKL 118 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 +++ I ++F + N + L F V + +L +V D + Sbjct: 119 VIIALIFYFMGHSYASEFINFTNLNAYQTLVLVAFFVFLLWKGVLFGYLLFSVFDFWFQK 178 Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275 H+ K+KMSK E+K E K + GNP IK ++ + + ++T+I+ NPTH Sbjct: 179 HEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHI 238 Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I Sbjct: 239 AICLYYKLGETPLPLVIETGKDAKALQIIKLAERYDIPVIEDIPLARSLYKNINKGQYIT 298 Query: 336 PVFYKAVAQLI 346 F++ VAQLI Sbjct: 299 EDFFEPVAQLI 309 >gi|238757869|ref|ZP_04619051.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC 35236] gi|238703854|gb|EEP96389.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC 35236] Length = 304 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 1/294 (0%) Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIP 116 + + L+ A + S+ V ++T SA L+ + I S L Q Sbjct: 1 MIQRVAGLMLLAAGLINKPFSYAVGVMTRALFSAGGLMFALFGGMLAAATIASVLAQVGF 60 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176 ++ + +R+S +K+I+S+ +L+ +KS +K+IL+ I T Sbjct: 61 MVASKALGFKAERISPVSNLKQIFSLRSLIELIKSCLKVILLCLIFVYLFRYYAPTFQAL 120 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236 +P + VR + +L F L V D + H + +MSK+++K E K Sbjct: 121 PYCDPACAIPVFSTFVRWMWYALLTFYVVLGVFDYAFQSHNTLKQQRMSKEDVKQEHKDM 180 Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296 G+P K R++ + R + + ++ +++ NPTH A+ L Y E P ++ KG Sbjct: 181 EGDPQTKKRRRELQREMQSGSLAQNVRQSAVVVRNPTHIAVCLGYDPVEMPVPTILEKGT 240 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 + A+ + +A +IP+ E +LAR LF V IP ++ VA L+ + Sbjct: 241 DARAEHIVSLALRESIPVVENIALARQLFHDVKCGEMIPESQFEPVAALLRLVL 294 >gi|75764710|ref|ZP_00744124.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487802|gb|EAO51604.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 271 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 144/265 (54%) Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + ++ P L+L F + +Y+IQ + + +KP R++ + R++S +LV Sbjct: 1 MGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLV 60 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 + +KS + L+G + + +N ++ I N + L ++ + + IL+ + L Sbjct: 61 DILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVL 120 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 +++D + ++ +KM K+E+K E K + G+P +K ++K+ + ++ + + AT Sbjct: 121 SIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMHAILQGTIAKKMDGAT 180 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 I+ NPTH ++ LRY + + AP++VAKG++ +A +R +A E IP+ E LARSL+ Sbjct: 181 FIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYY 240 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYH 351 QV + IP Y AV +++ + Sbjct: 241 QVEEDETIPEDLYVAVIEVMRYLIQ 265 >gi|213618546|ref|ZP_03372372.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 261 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 130/262 (49%), Gaps = 2/262 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKNRQKSIARSRIRHKMMEAT 262 +K + + + R+ + +MME Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDV 260 >gi|258611828|ref|ZP_05711674.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL R2-503] gi|258606467|gb|EEW19075.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL R2-503] Length = 300 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 146/259 (56%) Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 + ++++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V Sbjct: 31 LMEFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVE 90 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 +K+ + I L+ + I ++ T++ + N L F + + + L IA + Sbjct: 91 VVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIG 150 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 +LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT Sbjct: 151 LLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATF 210 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 ++ NPTH ++ +RY +T++ AP L+ KG++ +A +R++A +P+ LARS++ Sbjct: 211 VVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDEVPMITNRQLARSIYYT 270 Query: 328 VPINSAIPPVFYKAVAQLI 346 + I YK V +++ Sbjct: 271 TNPDEYIQEDLYKDVIEVM 289 >gi|15088606|gb|AAK84117.1|AF369954_15 YsaU [Yersinia enterocolitica] gi|16799075|gb|AAF82331.2|AF005744_10 YsaU [Yersinia enterocolitica] Length = 374 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 150/346 (43%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D+ +G + S++ ++A + F +Y + S L +L S Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAISGF--SSLYGLGSLLQRILLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + +E LL L + V+P LL + G L+Q L VK F Sbjct: 61 PSDIGVE------ALLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G K+I+++ +L +K+F+ +++ T + + + ++ Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++ L + ++D + + LKM KQE+K E K + G+P IK+ ++ Sbjct: 175 AHLCITFIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHIKSARRG 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + ++ +T ++ NPTH A+ + Y P L+ K + L AK + A Sbjct: 235 LHQEILSEEVKSNVRGSTFVMANPTHIAMVIYYNDDIAPLPYLMMKTRGLQAKAVIAYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +P+ + +AR L++ +S I V +I + ++ Sbjct: 295 SQGVPVVRDIPVARQLWRNYRKDSFINDQGLDDVMHIINWLVRVEL 340 >gi|213162120|ref|ZP_03347830.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 272 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 121/262 (46%) Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 S + ++ ++ +GS +Q V+ + + ++ K+I+S++++V Sbjct: 1 SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELC 60 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 KS +K+I++ I T + ++ + + ++ F + +L Sbjct: 61 KSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGIL 120 Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269 D + Y++ LKMSK ++K E K G+P +K R++ + + ++ ++ ++ Sbjct: 121 DYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVV 180 Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LARSLF +V Sbjct: 181 RNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE 240 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 IP ++ VA L+ + Sbjct: 241 RGDKIPETLFEPVAALLRMVMK 262 >gi|225619293|ref|YP_002720519.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae WA1] gi|225214112|gb|ACN82846.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae WA1] Length = 400 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 179/353 (50%), Gaps = 6/353 (1%) Query: 6 APDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 + +TE P+ +K A E G S E + + + + + ++V Sbjct: 41 EDEGRTELPTERKKRKAREEEGRVVNSAEINQTLVLAVSIAVIALLTTYFTHTVAQFFIT 100 Query: 65 LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 +L + + + +L + + ++ + + ++ G+G L Q + + Sbjct: 101 VLNKISNADASINNTAYTDMLLEIFVLLAKTAGIIMAVALVVGVGVNLAQTQFLFTTKKL 160 Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 KP+FKR++ +R++ S NL+N K K+I++ + ++ + + I+ Sbjct: 161 KPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVISLLTFTTIYGKRTELFNMINMG 220 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + FF V ++L +++F+ ++ D + Q+ + LKM+K E+K+E K+ G+P Sbjct: 221 LSQAMNLFFFIVLEMLAKVIIFMIIVSAFDYFFQKRQYINSLKMTKHEMKEEFKEMEGDP 280 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K++ + +AR + M+++ A ++ITNPTH+A+AL+Y + AP++ AKG + IA Sbjct: 281 LVKSQLQEMARKIVSRTMLKSVPEADVVITNPTHFAVALKYENG-DYAPIVTAKGADHIA 339 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+++IA ++++ I E LAR L+ V + IP + V++++ ++Y + Sbjct: 340 LKIKEIARQNDVQIVENKPLARELYYNVELGQYIPEKLFHVVSRILGEVYRIR 392 >gi|238793341|ref|ZP_04636967.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia ATCC 29909] gi|238727310|gb|EEQ18838.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia ATCC 29909] Length = 332 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 61/288 (21%), Positives = 129/288 (44%), Gaps = 1/288 (0%) Query: 56 YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LFMMFGIGSYLIQR 114 Y++ VL+ S+ + + ++ + + ++ ++ L ++ I + + Q Sbjct: 25 YTLVDQAIVLIRSSISQLQQPLAMALARIGAECMAVVIHIMGILGGALILVTILAGIAQV 84 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 P+L V+ + ++ K+++S+ ++ KS +K+ ++ I L + Sbjct: 85 GPLLATKAVEFKGEHINPINNAKQLFSLRSVFELTKSLLKVGVLTLIFGYLLLHYAVSFG 144 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + + +L ++ +++D + + +LKMS +EIK E K Sbjct: 145 YLAYCGSRCAIPVFATLMSWLLGALVACYVVFSLMDYAFQRYNTMKQLKMSLEEIKREHK 204 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 S G+P IK +++ + + R+T ++ NPTH+A+ L Y + PV++ K Sbjct: 205 DSNGDPHIKQKRRQLQHEEQSGSFAKNVRRSTAVVRNPTHFAVCLFYHADDAPLPVVIEK 264 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 G A + +A E IP+ E +LAR+L + V IP F++ V Sbjct: 265 GHGEQAALIIALAEEQGIPVVENIALARALHRDVACGDTIPEQFFEPV 312 >gi|208434682|ref|YP_002266348.1| flagellar biosynthetic protein [Helicobacter pylori G27] gi|208432611|gb|ACI27482.1| flagellar biosynthetic protein [Helicobacter pylori G27] Length = 335 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 88/325 (27%), Positives = 160/325 (49%), Gaps = 3/325 (0%) Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88 P S E +LA LI + FF + + +L + + L L+ Sbjct: 2 PKSMEVVGVLGLLAGLISIFVFFIWWVDGFSEMYRHVLKDFSLD--FSKESVQELFNQLA 59 Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148 L++P L++ M+ S ++Q + ++P F +++ G+K ++S+ L++ Sbjct: 60 KDTFLLLLPILIILMVVAFLSNVLQFGWLFAPKVIEPKFSKINPINGVKNLFSLKKLLDG 119 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 +K+ L + + + N L ++ +L L Sbjct: 120 SLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKNKALLLISSLLFLFFVLAF 179 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268 +D+ Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A ++ Sbjct: 180 VDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVV 239 Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E +LAR L++ V Sbjct: 240 VTNPTHYAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDV 298 Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353 +N+AIP ++AVA + ++ + Sbjct: 299 KLNAAIPEELFEAVAIVFAQVAKLE 323 >gi|296125237|ref|YP_003632489.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM 12563] gi|296017053|gb|ADG70290.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM 12563] Length = 399 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 181/355 (50%), Gaps = 6/355 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62 + + +TE P+ +K A E G S E + + + + + +V+ Sbjct: 38 SPEDEGRTELPTERKKRKAREEEGRVVNSAEINQTLVLAVTIAVIALLTTYLTDTVSKFF 97 Query: 63 HVLLAS-ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 +L +T ++ + + + + ++ L + ++ G+G L Q + Sbjct: 98 MTILNKISTADATMNVLSLPDMFLEIVVLIAKTAGIVLAVALVVGVGINLAQTKFLFTTK 157 Query: 122 HVKPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 +KP+FKR++ +R++ S NL+N K K++++ + ++ + + + Sbjct: 158 KLKPNFKRIAPTWSNFKERVFVSSQNLMNLAKILFKMVVISFLTFTTIYGKSTELFNMTN 217 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 ++ FF V ++L +++F+ ++ D + Q+ + LKM+K E+K+E K+ G Sbjct: 218 MELPQAMHLFFFIVLEMLAKVIVFMIIVSAFDYFFQRRQYINSLKMTKHEMKEEFKEMEG 277 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K++ + +AR + M++A A ++ITNPTH+A+AL+Y + APV+ AKG + Sbjct: 278 DPLVKSQLQDMARKIVSRTMLKAVPEADVVITNPTHFAVALKYENG-DYAPVVTAKGADH 336 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA ++++IA E+++ I E LAR L+ V I IP + V++++ ++Y + Sbjct: 337 IALRIKEIAKENDVQIVENKPLARELYFNVEIGQYIPEKLFHVVSRILGEVYRIR 391 >gi|313620092|gb|EFR91598.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378] Length = 260 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 140/249 (56%) Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157 +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ + I L Sbjct: 1 VMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITL 60 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 + + I ++ T++ + N L F + + + L IA + +LD + + Sbjct: 61 LSYVAYIGFRDHLDTLISYTGQNWLYSLSQIFALFKNEFLALFLVIAVIGLLDFFYQRYD 120 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277 + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ Sbjct: 121 YKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISV 180 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 +RY +T++ AP L+ KG++ +A +R++A +P+ LARS++ + I Sbjct: 181 VMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQED 240 Query: 338 FYKAVAQLI 346 YK V +++ Sbjct: 241 LYKDVIEVM 249 >gi|167820158|ref|ZP_02451838.1| type III secretion system protein [Burkholderia pseudomallei 91] Length = 318 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%) Query: 57 SVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 + L+ A D + + L A V+P L + + GIG ++Q Sbjct: 14 HFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQV 73 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 ++L V P+ ++ EG+K+++S + + +K VK ++V + ++ + + Sbjct: 74 GLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIA 133 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + +P + + K L+++ + D+ + K+KM+K E+K E K Sbjct: 134 GALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESK 193 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P++K +K +AR + A ++ NPTHYA+A+RY E+ P +VAK Sbjct: 194 NDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAK 253 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 G + A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 254 GLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307 >gi|148261120|ref|YP_001235247.1| type III secretion exporter [Acidiphilium cryptum JF-5] gi|146402801|gb|ABQ31328.1| type III secretion exporter [Acidiphilium cryptum JF-5] Length = 335 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 159/322 (49%), Gaps = 3/322 (0%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 SRE + +S+ L ++ + + L A ++ + + L ++ Sbjct: 9 SREVATLASLGVALAVMIGVLPSSAERLANTLASAFTRAAT--VDSGAGLSRALWQAGMA 66 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 + + IP + I L+Q N + +F R++ GI +++ NL + Sbjct: 67 SLGVFIPFAGAIALSAIVVSLLQTGFRTNWGAIGLNFARLNPLAGIGKLFGTPNLAASGQ 126 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S +K+ +G + + + + + + ++L F ++ +L ++ +D Sbjct: 127 SILKLAAIGAALYVVMDARLHGLEAMLLGSEKTLLAAIFGSIVAILSAAVMIQVVSGAVD 186 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 +++ + +KMS+QE+KDE K++ G+P ++ R K+ + + + A +RA ++IT Sbjct: 187 FVLVRNRFSTSVKMSRQEVKDEQKETDGDPHVRARIKAARSALAKRSLNVAMARAAVVIT 246 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NPTHYA+AL Y + +AP +VAKG + A ++R +A E IPI P LAR+LF+Q + Sbjct: 247 NPTHYAVALEYRAGQAEAPKIVAKGADERAARIRDLAREARIPIVANPPLARALFQQ-DV 305 Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352 + I P Y+AVA++I I+ Sbjct: 306 ETEILPEHYRAVAEIIAYIWKL 327 >gi|125657194|gb|ABN48682.1| FlhB [Burkholderia pseudomallei] Length = 335 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 136/307 (44%), Gaps = 1/307 (0%) Query: 47 LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106 +L +P + L +L + L +++ P ++ + Sbjct: 1 MLVLLAPSWLAEFRALFLLELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVV 60 Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 +GS L+ +L+ +KP F R++ + R+ S + F S +K + + ++ Sbjct: 61 LGS-LLPGGWILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLS 119 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 L L F + + + + D+ + + +M+K Sbjct: 120 ATTLAAFLRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTK 179 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE K + G P +++R + + R + + + A +++ NPTHYA+AL+Y Sbjct: 180 QEVKDEHKNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRA 239 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP ++AKG + +A +R+IA EH + + P LAR+++ +N IP Y+AVAQ++ Sbjct: 240 EAPFVIAKGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVL 299 Query: 347 YKIYHKK 353 + K Sbjct: 300 TYVLQLK 306 >gi|167724018|ref|ZP_02407254.1| type III secretion system protein [Burkholderia pseudomallei DM98] Length = 318 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 134/271 (49%), Gaps = 1/271 (0%) Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L A V+P L + + GIG ++Q ++L V P+ ++ EG+K+ Sbjct: 38 EMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEGLKK 97 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++S + + +K VK ++V + ++ + + + +P + + K L++ Sbjct: 98 LFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSRIFREILAKWLMV 157 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 + + D+ + K+KM+K E+K E K G+P++K +K +AR Sbjct: 158 VAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRLARELAAAPP 217 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 + A ++ NPTHYA+A+RY E+ P ++AKG + A +R+ A + NIPI P Sbjct: 218 QHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDEAAIALRRAAQDANIPIIGNP 277 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +AR+LF+ + + +P ++ VA ++ I Sbjct: 278 PVARALFR-IGVEEPVPEELFEIVAAILRWI 307 >gi|134282061|ref|ZP_01768767.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|237508812|ref|ZP_04521527.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei MSHR346] gi|254186853|ref|ZP_04893369.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|134246590|gb|EBA46678.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 305] gi|157934537|gb|EDO90207.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pasteur 52237] gi|235001017|gb|EEP50441.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei MSHR346] Length = 411 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|53722555|ref|YP_111540.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei K96243] gi|167923333|ref|ZP_02510424.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei BCC215] gi|217425128|ref|ZP_03456623.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|226195957|ref|ZP_03791543.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] gi|254185170|ref|ZP_04891759.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|254301459|ref|ZP_04968903.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|81606433|sp|Q63K32|BSAZ_BURPS RecName: Full=Secretion apparatus protein BsaZ gi|52212969|emb|CAH39007.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|157811010|gb|EDO88180.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 406e] gi|184215762|gb|EDU12743.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1655] gi|217391733|gb|EEC31760.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 576] gi|225931850|gb|EEH27851.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei Pakistan 9] Length = 411 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|53716465|ref|YP_106123.1| surface presentation of antigens protein SpaS [Burkholderia mallei ATCC 23344] gi|67641434|ref|ZP_00440213.1| type III secretion system protein BsaZ [Burkholderia mallei GB8 horse 4] gi|124382305|ref|YP_001025867.1| surface presentation of antigens protein SpaS [Burkholderia mallei NCTC 10229] gi|126446476|ref|YP_001077952.1| surface presentation of antigens protein SpaS [Burkholderia mallei NCTC 10247] gi|167004213|ref|ZP_02269980.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20] gi|254176483|ref|ZP_04883141.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC 10399] gi|254200989|ref|ZP_04907354.1| type III secretion system protein BsaZ [Burkholderia mallei FMH] gi|254204953|ref|ZP_04911306.1| type III secretion system protein BsaZ [Burkholderia mallei JHU] gi|254359072|ref|ZP_04975344.1| type III secretion system protein BsaZ [Burkholderia mallei 2002721280] gi|81683780|sp|Q62B05|BSAZ_BURMA RecName: Full=Secretion apparatus protein BsaZ gi|205831285|sp|A2S1P8|BSAZ_BURM9 RecName: Full=Secretion apparatus protein BsaZ gi|206558177|sp|A3MCG6|BSAZ_BURM7 RecName: Full=Secretion apparatus protein BsaZ gi|52422435|gb|AAU46005.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC 23344] gi|126239330|gb|ABO02442.1| type III secretion system protein BsaZ [Burkholderia mallei NCTC 10247] gi|147748601|gb|EDK55676.1| type III secretion system protein BsaZ [Burkholderia mallei FMH] gi|147754539|gb|EDK61603.1| type III secretion system protein BsaZ [Burkholderia mallei JHU] gi|148028259|gb|EDK86219.1| type III secretion system protein BsaZ [Burkholderia mallei 2002721280] gi|160697525|gb|EDP87495.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC 10399] gi|238522374|gb|EEP85819.1| type III secretion system protein BsaZ [Burkholderia mallei GB8 horse 4] gi|243060408|gb|EES42594.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20] gi|261826738|gb|ABM99347.2| type III secretion system protein BsaZ [Burkholderia mallei NCTC 10229] Length = 411 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQSNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|167742987|ref|ZP_02415761.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|167828533|ref|ZP_02460004.1| type III secretion system protein [Burkholderia pseudomallei 9] gi|167906942|ref|ZP_02494147.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167923134|ref|ZP_02510225.1| type III secretion system protein [Burkholderia pseudomallei BCC215] Length = 318 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 72/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%) Query: 57 SVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 + L+ A D + + L A V+P L + + GIG ++Q Sbjct: 14 HFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQV 73 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 ++L V P+ ++ EG+K+++S + + +K VK ++V + ++ + + Sbjct: 74 GLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIA 133 Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + +P + + K L+++ + D+ + K+KM+K E+K E K Sbjct: 134 GALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESK 193 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P++K +K +AR + A ++ NPTHYA+A+RY E+ P ++AK Sbjct: 194 NDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAK 253 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 G + A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ I Sbjct: 254 GLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307 >gi|126455636|ref|YP_001076109.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 1106a] gi|167850199|ref|ZP_02475707.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei B7210] gi|242313702|ref|ZP_04812719.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] gi|254193747|ref|ZP_04900179.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|206558142|sp|A3P6Z9|BSAZ_BURP0 RecName: Full=Secretion apparatus protein BsaZ gi|126229404|gb|ABN92817.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106a] gi|169650498|gb|EDS83191.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei S13] gi|242136941|gb|EES23344.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1106b] Length = 411 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|76818361|ref|YP_335733.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 1710b] gi|254264647|ref|ZP_04955512.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] gi|123597194|sp|Q3JL20|BSAZ_BURP1 RecName: Full=Secretion apparatus protein BsaZ gi|76582834|gb|ABA52308.1| surface presentation of antigens protein [Burkholderia pseudomallei 1710b] gi|254215649|gb|EET05034.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 1710a] Length = 411 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|167915301|ref|ZP_02502392.1| type III secretion system protein [Burkholderia pseudomallei 112] Length = 312 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 140/302 (46%), Gaps = 3/302 (0%) Query: 50 FFSPGIYSVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107 + L+ A D + + L A V+P L + + GI Sbjct: 1 MLVAAADHFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGI 60 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167 G ++Q ++L V P+ ++ EG+K+++S + + +K VK ++V + ++ Sbjct: 61 GGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIV 120 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + + +P + + K L+++ + D+ + K+KM+K Sbjct: 121 WLFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKD 180 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+K E K G+P++K +K +AR + A ++ NPTHYA+A+RY E+ Sbjct: 181 EVKRESKNDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHP 240 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 P +VAKG + A +R+ A + NIPI P +AR+LF+ + + +P ++ VA ++ Sbjct: 241 LPRVVAKGLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILR 299 Query: 348 KI 349 I Sbjct: 300 WI 301 >gi|167907134|ref|ZP_02494339.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei NCTC 13177] Length = 411 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|126443467|ref|YP_001063158.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 668] gi|206558186|sp|A3NLD7|BSAZ_BURP6 RecName: Full=Secretion apparatus protein BsaZ gi|126222958|gb|ABN86463.1| type III secretion protein, YscU/HrpY family [Burkholderia pseudomallei 668] Length = 406 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|259908635|ref|YP_002648991.1| surface presentation of antigens protein SpaS [Erwinia pyrifoliae Ep1/96] gi|224964257|emb|CAX55764.1| Export protein for peptides using the type III secretion system [Erwinia pyrifoliae Ep1/96] gi|283478607|emb|CAY74523.1| Surface presentation of antigens protein SpaS [Erwinia pyrifoliae DSM 12163] Length = 363 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 147/349 (42%), Gaps = 12/349 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK +D+ +G + ++ ++++ +LL+ S S +L + Sbjct: 3 QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLYGMD--FSSFISYFSKILLN 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++D + + +L P + + + GI + L Q + +K +FK Sbjct: 61 ENSVNIDDF------MLQMMYIFLQLSFPLIGVCCLSGIIATLFQTRFTIATQALKLNFK 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EGIK+I+S+ + F+KS +++ +T + L A ++ Sbjct: 115 ALNPVEGIKKIFSMRTVKEFIKSLCYLMVFLFTCYNFITNDLKHALVIHHAGIGQLIVSL 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K + + + + + D Y LKM K E+K E K+S GNP IK+ ++ Sbjct: 175 LSLTVKAVTIFIAYSLFVLCADFIMEYFLHVKDLKMDKHEVKQEHKESDGNPQIKSARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + M A +++++ NPTH A+A+ + P + + N AK A Sbjct: 235 AHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRASNFKAKAALLYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354 E IP+ L R L+K S I AV ++ + +I Sbjct: 295 EIGIPVVRNVLLTRRLYKSYVQYSFISINDDDL-MAVMDILIWLRQVEI 342 >gi|310767465|gb|ADP12415.1| surface presentation of antigens protein SpaS [Erwinia sp. Ejp617] Length = 363 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 147/349 (42%), Gaps = 12/349 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK +D+ +G + ++ ++++ +LL+ S S +L + Sbjct: 3 QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLYGMD--FSSFISYYSKVLLN 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++D + + +L P + + + GI + L Q + +K +FK Sbjct: 61 ENSVNIDDF------MLQMMYIFLQLSFPLIGVCCLSGIIATLFQTRFTIATQALKLNFK 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EGIK+I+S+ + F+KS +++ +T + L A ++ Sbjct: 115 ALNPVEGIKKIFSMRTVKEFIKSLCYLMVFLFTCYNFITNDLKHALVIHHAGIGQLIVSL 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K + + + + + D Y LKM K E+K E K+S GNP IK+ ++ Sbjct: 175 LSLTVKAVTIFIAYSFFVLCADFIMEYFLHVKDLKMDKHEVKQEHKESDGNPQIKSARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + M A +++++ NPTH A+A+ + P + + N AK A Sbjct: 235 AHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRASNFKAKAALLYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354 E IP+ L R L+K S I AV ++ + +I Sbjct: 295 EIGIPVVRNVLLTRRLYKSYVQYSFISINDDDL-MAVMDILIWLRQVEI 342 >gi|83716929|ref|YP_439036.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis E264] gi|167615593|ref|ZP_02384228.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis Bt4] gi|257142144|ref|ZP_05590406.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis E264] gi|123539589|sp|Q2T713|BSAZ_BURTA RecName: Full=Secretion apparatus protein BsaZ gi|83650754|gb|ABC34818.1| type III secretion system protein BsaZ [Burkholderia thailandensis E264] Length = 381 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 138/321 (42%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGALS-----APALVDLTRVAAEFTRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + ++D Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|188534034|ref|YP_001907831.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis Et1/99] gi|188029076|emb|CAO96944.1| export protein for peptides using the type III secretion system [Erwinia tasmaniensis Et1/99] Length = 369 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 145/346 (41%), Gaps = 12/346 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK +D+ +G ++ + +L+ +L Y V D + + Sbjct: 3 QKTELPTEKKRKDSARKGQTLKVKDFTTTVILLSGSYFLC-------YGVNFDDFIFFYT 55 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 E ++ F++ S+ +LV P + + + GI + L+Q + +K +FK Sbjct: 56 GVLNDSESLNIDGFIMEMTSI-FLKLVFPFIAICCLSGIAATLLQTRFNIASEGLKLNFK 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG K+I+S+ L +KS + + L + +L +A ++ Sbjct: 115 ALNPVEGFKKIFSLRTLKECVKSVCYLGVFICTCYSLLDSDLKNILAIRNAGIVQLIVSM 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K + + + A + + Y LKM K E+K E K++ GNP IKN ++ Sbjct: 175 LSLTVKAVTVFAAWGALVLCAEFIAEYFLHVKDLKMDKYEVKQERKETEGNPQIKNARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + A +++++ NPTH A+A+ + P + + N A+ A Sbjct: 235 AHQEILSGEERAAIRNSSVVMANPTHIAVAIYFNPDVAPLPFIALRVTNFKARSAISYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYH 351 + IP+ L R L++ +S I V +++ + Sbjct: 295 KIGIPVVRNIFLTRRLYRSYYQHSFISLNDRDL-MLVMEILIWLRQ 339 >gi|194292000|ref|YP_002007907.1| sctu: non flagellar t3S system conserved inner membrane protein. flhb/hrpn/yscu/spas family [Cupriavidus taiwanensis LMG 19424] gi|193225904|emb|CAQ71851.1| SctU: non flagellar T3S system conserved inner membrane protein. flhB/hrpN/yscU/spaS family [Cupriavidus taiwanensis LMG 19424] Length = 344 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 157/343 (45%), Gaps = 4/343 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + K + +K+++A G P S + + L L L + S H Sbjct: 2 SDSEKNLEATRRKLDEARKRGEVPRSSDVTSAVVFLGVLAGLWLLGRYFVRLFQSLWHSA 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + S Q + ++ L + V+P + L ++ GI +Q P++ +KP Sbjct: 62 MGSVPQHLADQ--QMLVLGEAAARFLLMGVLPIVGLALVCGIVGAFLQVGPLVAFEQIKP 119 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ EG+KR++++ NLVN K VKI+L+ ++ + + A P IL Sbjct: 120 DLARLNPAEGLKRMFAVRNLVNLAKILVKILLLAGLVYVLALGAIEDGVRTGYARPAEIL 179 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + ++ + + V+D HQ+ + +MS E + E K++ G+PI+ R Sbjct: 180 LLVAYIILRMCCWAAVIYLVMAVVDYVHERHQFMKRQRMSVDEYRREYKETQGDPIMAGR 239 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 +++ + E +T ++ + T YA+ALRY P +VAKG +A ++R+ Sbjct: 240 RRAAFFEAAFFGVSERVRVSTAVVYS-TQYAVALRYD-GPGTLPRVVAKGSGQVAARIRQ 297 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 A ++ +P + LA+ L+ VP++ I ++ VA+L+ Sbjct: 298 AAADYLVPSAFDSDLAQRLYLNVPLDRFIDRTLFERVAELMRW 340 >gi|62181389|ref|YP_217806.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129022|gb|AAX66725.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 356 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 147/321 (45%), Gaps = 8/321 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++ Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG K+++S+ + + +K+ + + I + + ++ N I Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L + +LD Y + +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFRTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314 >gi|167566195|ref|ZP_02359111.1| surface presentation of antigens protein SpaS [Burkholderia oklahomensis EO147] Length = 374 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 141/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G SR+ + +I + + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKSRDI-----VALVVIAAGASSAAAVVDLTRVAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +L+ + G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ +K+ + + ++ + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + ++D Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|167573305|ref|ZP_02366179.1| surface presentation of antigens protein SpaS [Burkholderia oklahomensis C6786] Length = 374 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 141/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G SR+ + +I + + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKSRDI-----VALVVIAAGASSAAAVVDLTRVAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +L+ + G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ +K+ + + ++ + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + ++D Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTIRLVLLFLLCALPVLIVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|85058550|ref|YP_454252.1| surface presentation of antigens protein SpaS [Sodalis glossinidius str. 'morsitans'] gi|45504758|gb|AAS66849.1| YsaU [Sodalis glossinidius] gi|84779070|dbj|BAE73847.1| type III secretion apparatus SpaS [Sodalis glossinidius str. 'morsitans'] Length = 370 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 145/326 (44%), Gaps = 8/326 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ K+ ++ +G + ++ + ++ + YL Y + + + Sbjct: 3 EKTEKPTEKRSRESAQKGQSFKVKDVTTTVVLIGGIAYLG-------YGMDFQPFIAFYN 55 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 E +S+ +L++ L++ +L +P + + + G S L+Q V+ +K +F Sbjct: 56 NVVLNGERLSYQAYLIS-LAMLFMQLTLPIVAVCFIAGTFSTLLQTRMVIATKAIKLNFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ +G+KRI+++ + +K+ + + + + +L N ++ Sbjct: 115 ALNPVKGLKRIFNLRAVKELVKTLCYVAVFVVGVNYFQSHYLKELLSIYHGNIWQVIRIW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K++ + + + VLD Y + +KM K E+K E K++ GNP IK+ +++ Sbjct: 175 SELAVKLVFIYVGVSLIVLVLDGLCEYFLQFKDMKMEKHEVKQEHKENEGNPEIKSARRN 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + A + +I+ NPTH AL + + P + + N+ A+ + A Sbjct: 235 AHFELLSGAEQAAIRSSEMILANPTHIALGIFFNPDVAMLPFITLRATNMKARAIIAYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334 + +P+ LAR L+K ++S I Sbjct: 295 KVGVPVVRSIPLARRLYKNYTVHSFI 320 >gi|293416348|ref|ZP_06658987.1| hypothetical protein ECDG_03102 [Escherichia coli B185] gi|291431704|gb|EFF04687.1| hypothetical protein ECDG_03102 [Escherichia coli B185] Length = 362 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 147/323 (45%), Gaps = 12/323 (3%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K+ E+A +G + SR+ + L YL S + S+ L + Sbjct: 2 SGNKTEKPTRKRREEAARKGQSFRSRDFIVACLTLGGTAYLASVAS--LRSLMEVLGQAV 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + Q + D + VF S ++++P L L + ++Q VL ++P Sbjct: 60 SFHFQINIADYTEQVFC------SGMKIILPFLALCLFCSALPSILQTGFVLATKALQPR 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKI--ILVGTIITISLTENYFTMLDFISANPHSI 184 + +GIK+I+S+ + +K+ + + ++ ++ EN + ++ N + Sbjct: 114 LSALDPTKGIKKIFSLRTVKEAVKAILYLGSFIISGMLFWF--ENKRLVFSQVNGNLFVV 171 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + ++ + L + +LD Y +KM K+E+K E+K++ GNP +K+ Sbjct: 172 ADVWRHLLFSLVALCLGCSVIILLLDALAEYFLVMKDMKMDKEEVKREMKETEGNPEVKS 231 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R++ I + ++ + +II NPTH A+ + + P++ + N A +R Sbjct: 232 RRREIHMDILSEQIKSDIDNSRLIIANPTHIAVGIYFKPEIAPYPLISVREANQRALAVR 291 Query: 305 KIAYEHNIPIFEEPSLARSLFKQ 327 + A + IP+ + LAR +FK Sbjct: 292 QYAEKVGIPVVVDIRLARRIFKT 314 >gi|167577442|ref|ZP_02370316.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis TXDOH] Length = 381 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 138/321 (42%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGALS-----APALVDLTRVAAEFTRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRIDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ + +K+ + + + + + + + A P + + Sbjct: 115 ALDPIKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + ++D Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|16766193|ref|NP_461808.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615799|ref|YP_001589764.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167993122|ref|ZP_02574217.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230957|ref|ZP_02656015.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235927|ref|ZP_02660985.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242624|ref|ZP_02667556.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261990|ref|ZP_02683963.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463978|ref|ZP_02697895.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444022|ref|YP_002042128.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451625|ref|YP_002046847.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468977|ref|ZP_03074961.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735131|ref|YP_002115839.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262027|ref|ZP_03162101.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242012|ref|YP_002216856.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388611|ref|ZP_03215223.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928232|ref|ZP_03219432.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353830|ref|YP_002227631.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858149|ref|YP_002244800.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|730801|sp|P40702|SPAS_SALTY RecName: Full=Surface presentation of antigens protein spaS gi|404293|emb|CAA51927.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421435|gb|AAL21767.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365163|gb|ABX68931.1| hypothetical protein SPAB_03590 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402685|gb|ACF62907.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409929|gb|ACF70148.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455341|gb|EDX44180.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710633|gb|ACF89854.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633151|gb|EDX51565.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197240282|gb|EDY22902.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290674|gb|EDY30028.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936528|gb|ACH73861.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605709|gb|EDZ04254.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322554|gb|EDZ07751.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273611|emb|CAR38598.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205328759|gb|EDZ15523.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334405|gb|EDZ21169.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338041|gb|EDZ24805.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349087|gb|EDZ35718.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709952|emb|CAR34306.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248023|emb|CBG25856.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995015|gb|ACY89900.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159446|emb|CBW18964.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913905|dbj|BAJ37879.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223436|gb|EFX48502.1| Surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614295|gb|EFY11226.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621641|gb|EFY18494.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624502|gb|EFY21335.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628833|gb|EFY25616.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633440|gb|EFY30182.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635984|gb|EFY32692.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639692|gb|EFY36377.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646875|gb|EFY43378.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650643|gb|EFY47048.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654745|gb|EFY51064.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658965|gb|EFY55218.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664468|gb|EFY60662.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668283|gb|EFY64440.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673737|gb|EFY69838.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677798|gb|EFY73861.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681372|gb|EFY77404.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683774|gb|EFY79784.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131239|gb|ADX18669.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193837|gb|EFZ79040.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200307|gb|EFZ85389.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203190|gb|EFZ88219.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205563|gb|EFZ90528.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210074|gb|EFZ94977.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216377|gb|EGA01104.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221124|gb|EGA05555.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226946|gb|EGA11128.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230770|gb|EGA14888.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234879|gb|EGA18965.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238918|gb|EGA22968.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241618|gb|EGA25649.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248235|gb|EGA32171.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251181|gb|EGA35054.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256065|gb|EGA39803.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263200|gb|EGA46738.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264297|gb|EGA47803.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271123|gb|EGA54551.1| type III secretion system protein SpaS [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624618|gb|EGE30963.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628939|gb|EGE35282.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989759|gb|AEF08742.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 356 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++ Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG K+++S+ + + +K+ + + I + + ++ N I Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIAV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314 >gi|167915488|ref|ZP_02502579.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 112] Length = 375 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|167550264|ref|ZP_02344021.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324806|gb|EDZ12645.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 356 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++ Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG K+++S+ + + +K+ + + I + + ++ N I Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVDIAV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314 >gi|224584665|ref|YP_002638463.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469192|gb|ACN47022.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715873|gb|EFZ07444.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 356 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++ Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG K+++S+ + + +K+ + + I + + ++ N I Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314 >gi|16761664|ref|NP_457281.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143148|ref|NP_806490.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414839|ref|YP_151914.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168820416|ref|ZP_02832416.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197247812|ref|YP_002147784.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197363767|ref|YP_002143404.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213052431|ref|ZP_03345309.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425711|ref|ZP_03358461.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580230|ref|ZP_03362056.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609307|ref|ZP_03369133.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649913|ref|ZP_03379966.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853013|ref|ZP_03382545.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238909654|ref|ZP_04653491.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25322234|pir||AC0851 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503965|emb|CAD05994.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138781|gb|AAO70350.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129096|gb|AAV78602.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095244|emb|CAR60795.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211515|gb|ACH48912.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205342919|gb|EDZ29683.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087292|emb|CBY97057.1| Surface presentation of antigens protein spaS [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 356 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++ Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A + + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 60 ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG K+++S+ + + +K+ + + I + + ++ N I Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314 >gi|167743198|ref|ZP_02415972.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 14] Length = 362 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|167820372|ref|ZP_02452052.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 91] Length = 365 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|167898806|ref|ZP_02486207.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 7894] Length = 367 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|167828744|ref|ZP_02460215.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei 9] Length = 358 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|34498076|ref|NP_902291.1| surface presentation of antigens protein SpaS [Chromobacterium violaceum ATCC 12472] gi|34103931|gb|AAQ60291.1| secretory protein / flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC 12472] Length = 353 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 73/328 (22%), Positives = 142/328 (43%), Gaps = 8/328 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ KK++DA +G + SR+ + L + YL+ F S + + L Sbjct: 2 SSNKTEKPTRKKLQDAAKKGQSFKSRDLVVACLTLCGVAYLVSFGS--LVELMGIFRQAL 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A Q + + VF +L++P LL + L+Q VL +K + Sbjct: 60 AGGFQLDMRGYAQAVF------WQGLKLLLPIFLLCVAASALPVLLQTGFVLASEALKLN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 + ++ G K+++S+ + +K+ + + + + ++ + ++ + I Sbjct: 114 LEALNPINGFKKLFSLRTVKEAVKALLYLASFVVAVALIWRKHKALLFAQLNGSVMDIAA 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L I + +LD Y + +KM KQE+K E+K+ GNP IK+R+ Sbjct: 174 VWRELLLSLVLTCLGCIVLILILDALAEYFLFMKDMKMDKQEVKREMKEQEGNPEIKSRR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + ++ + +II NPTH A+ + + P + N A +R Sbjct: 234 REAHFELLSEQVKSDVENSRLIIANPTHIAIGIYFRPELVPIPFVSVMETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAI 334 A + +P+ + LAR + S I Sbjct: 294 AEKVGVPVVRDVPLARRILASHRRYSFI 321 >gi|218988947|gb|ACL13610.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. salamae serovar Sofia] Length = 356 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 147/321 (45%), Gaps = 8/321 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++ Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A ++ + D S VF + + +IP +LL ++ L+Q VL +KP+ Sbjct: 60 ADNFEQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALRALLQAGFVLATEALKPN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG K+++S+ + + +K+ + + I + + ++ N I Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFLQLNGNVVGIAV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314 >gi|115358968|ref|YP_776106.1| type III secretion exporter [Burkholderia ambifaria AMMD] gi|115284256|gb|ABI89772.1| type III secretion exporter [Burkholderia ambifaria AMMD] Length = 343 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 69/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + P++K++ DA +G+ P S E + + + L + + Sbjct: 1 MAEKD------QKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ +A + + + L+ + + L + ++ G+ + +Q V+ Sbjct: 55 LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ + Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SIL + + L + ++DI H++ K+KMS +E++ E K+ G+P Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ +++ +AR + + A++++ + Y P ++A+G+ A Sbjct: 233 HIEAKRRQLAREAQFSSLQDRIGFASVVVYS--SSVAVALYYGGIGTLPWVLARGEGEAA 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++ ++A + P LA +L+ P I ++ VAQL+ Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338 >gi|171322217|ref|ZP_02911064.1| type III secretion exporter [Burkholderia ambifaria MEX-5] gi|171092454|gb|EDT37799.1| type III secretion exporter [Burkholderia ambifaria MEX-5] Length = 343 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 69/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + P++K++ DA +G+ P S E + + + L + + Sbjct: 1 MAEKD------QKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ +A + + + L+ + + L + ++ G+ + +Q V+ Sbjct: 55 LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ + Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SIL + + L + ++DI H++ K+KMS +E++ E K+ G+P Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ +++ +AR + + A++++ + Y P ++A+G+ A Sbjct: 233 HIEAKRRQLAREAQFSSLPDRIGFASVVVYS--SSVAVALYYGGVGTLPWVLARGEGEAA 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++ ++A + P LA +L+ P I ++ VAQL+ Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338 >gi|312172198|emb|CBX80455.1| Surface presentation of antigens protein SpaS [Erwinia amylovora ATCC BAA-2158] Length = 363 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 145/349 (41%), Gaps = 12/349 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK +D+ +G++ ++ ++++ +LL +L Sbjct: 3 QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMD--FSRFIDCYTNILID 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + L P + + + G+ + L Q + +K +FK Sbjct: 61 VSSVNINDF------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIATQALKLNFK 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+KRI+S+ + F+KS +++ + + L A ++ Sbjct: 115 ALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIVSM 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K + + + + + D Y LKM K E+K E K+S GNP IK+ ++ Sbjct: 175 LSLTVKAVTIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + M A ++++I+ NPTH A+A+ + P + + N A+ + A Sbjct: 235 AHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLVYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354 + IP+ L R L+K +S I A+ ++ + +I Sbjct: 295 KIGIPVVRNIFLTRRLYKSYVQHSFISLNDDDL-MAIMDILIWLRQVEI 342 >gi|167724223|ref|ZP_02407459.1| surface presentation of antigens protein SpaS [Burkholderia pseudomallei DM98] Length = 352 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T + Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ + F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASTGAQLNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S + + +K+ + + + + + + + A P + + Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + +LD Y ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 +P+ +LARS+++ P Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315 >gi|292488070|ref|YP_003530947.1| surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] gi|291553494|emb|CBA20539.1| Surface presentation of antigens protein SpaS [Erwinia amylovora CFBP1430] Length = 363 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 145/349 (41%), Gaps = 12/349 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK +D+ +G++ ++ ++++ +LL +L Sbjct: 3 QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMD--FSRFIDCYTNILID 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + L P + + + G+ + L Q + +K +FK Sbjct: 61 VSSVNINDF------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIATQALKLNFK 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ EG+KRI+S+ + F+KS +++ + + L A ++ Sbjct: 115 ALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIVSM 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 K + + + + + D Y LKM K E+K E K+S GNP IK+ ++ Sbjct: 175 LSLTVKAVTIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSARRR 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + M A ++++I+ NPTH A+A+ + P + + N A+ + A Sbjct: 235 AHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLVYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354 + IP+ L R L+K +S I A+ ++ + +I Sbjct: 295 KIGIPVVRNIFLTRRLYKSYVQHSFISLNDDDL-MAIMDILIWLRQVEI 342 >gi|167840165|ref|ZP_02466849.1| surface presentation of antigens protein SpaS [Burkholderia thailandensis MSMB43] Length = 366 Score = 243 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 137/321 (42%), Gaps = 8/321 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P++KK+ DA +G +R+ I + +P + +T Sbjct: 3 EKTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGALA-----APALVDLTRIAAEFARI 57 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A+ D F L L R+ P +LL G L+Q L + ++ Sbjct: 58 ASSGAQPDPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 + +G+KR++S ++ + K+ + + + + + + + A + + Sbjct: 115 ALDPVKGMKRLFSWRSVKDAAKALLYVAVFAVTVRVFADLCHHDLFGLFRARAALLGHMW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +++++ LL + ++D Y+ ++ +LKM K E+K E K+S GN IK++++ Sbjct: 175 IVLTIRLVLLFLLCALPVLIVDAAVEYYLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I + + ++ ++ I+ NPTH A+ + P + + N A + + A Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVP 329 + + +LARS+++ P Sbjct: 295 ACGVTVVRNVALARSIYRNSP 315 >gi|153003614|ref|YP_001377939.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5] gi|152027187|gb|ABS24955.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5] Length = 343 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 159/347 (45%), Gaps = 8/347 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 ++TE P+ K++ +A G+ RE +++ L+ L S+T +L LL Sbjct: 3 GDRTERPTPKRLREARRRGDVAQGRELGGAAALAGGLLALALTGP----SMTRELASLLR 58 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + Q + + LL ++ RL + + + + +Q V + P Sbjct: 59 AQLQAAAQPSADPAALLHAALVTVGRLALAPASAALAAAVLAGALQTGFVFAPGALSPRA 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +RV+ G++R+ S + + + K ++ + + L ++ + L+ Sbjct: 119 ERVNPLRGLRRLLSPASALAVLLGLAKAAVLLGVAVVWLRSAAPSLAGLARLDAR-ALWG 177 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + ++ ++ A L + D+ + + L+M++ E++ E K+ G+P + ++ Sbjct: 178 SLPMLGGLVARLVAAYALLALGDVALARFRHRRALRMTRDEVRREHKEDEGDPAHRAERR 237 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + R+ + SRAT+++ NPTH A+ALR+ + DAP +VAKG A ++R A Sbjct: 238 RLHRALLEAGP---VSRATVVVVNPTHVAVALRHDRDGEDAPRVVAKGSGPAAARIRSAA 294 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 +PI + LAR+L + + IP Y+A A ++ +Y ++ Sbjct: 295 RRAGVPIVRDVPLARALHRLAEVGDEIPEELYEAAAAVLAHLYGLEV 341 >gi|220913714|ref|YP_002489023.1| type III secretion exporter [Arthrobacter chlorophenolicus A6] gi|219860592|gb|ACL40934.1| type III secretion exporter [Arthrobacter chlorophenolicus A6] Length = 359 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 162/353 (45%), Gaps = 9/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ +TE + K++ D ++G S++ + + + A + L + Sbjct: 1 MSD---SQERTEQATDKRMRDVRSKGQLSRSQDLTAWLGVGAGAVMLPATIDRASNAAVD 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + + A D + V L S + ++ P ++ + + +Q Sbjct: 58 QVFSVRAIMES---PDPAKAVHALELGLGSMAGVLAPMFVVVFLVVLAGSAVQGGVHF-- 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + F+ +L G+KR++ + + +K+ +K ++VG ++ + +L Sbjct: 113 KKFRAEFEHFNLLSGMKRLFGMQAVWGGLKALLKAVVVGIVLYSVVQGLIPVLLTAGGLP 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ A + ++ + L +D+ + K +MSK+E+ DE K + G+P Sbjct: 173 VSGVIAAAADGIGALVQCAVAAGLVLAAVDVLVVMRRNRKKTRMSKKEVTDENKNTEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++++ ++S + R++M+ A + A +++ NPTH A+AL+Y + AP +VAKG +IA Sbjct: 233 LVRSHRRSRQLAMSRNRMIAAIADADVVLVNPTHVAVALKYDAGK-SAPRVVAKGAGVIA 291 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++R A +P+ ++ LAR+L + IP Y+AVA ++ + K Sbjct: 292 ARIRAEAEAKEVPMVQDIPLARALHSACELGQEIPVELYRAVAGVLAFVMSLK 344 >gi|170702400|ref|ZP_02893289.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] gi|172063760|ref|YP_001811411.1| type III secretion exporter [Burkholderia ambifaria MC40-6] gi|170132694|gb|EDT01133.1| type III secretion exporter [Burkholderia ambifaria IOP40-10] gi|171996277|gb|ACB67195.1| type III secretion exporter [Burkholderia ambifaria MC40-6] Length = 343 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D + P++K++ +A +G+ P S E + + + L + + Sbjct: 1 MAEKD------QKPTAKRLREARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ +A + + + L+ + + L + ++ G+ + +Q V+ Sbjct: 55 LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + + P R++ EG+K ++S+ NLVN K +K +L+ + + E+ + Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P SIL + + L + ++DI H++ K+KMS +E++ E K+ G+P Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 I+ +++ +AR + + A++++ + Y P ++A+G+ A Sbjct: 233 HIEAKRRQLAREAQFSSLQDRIGFASVVVYS--SSVAVALYYGGIGTLPWVLARGEGEAA 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +++ ++A + P LA +L+ P I ++ VAQL+ Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338 >gi|238755990|ref|ZP_04617315.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473] gi|238705779|gb|EEP98171.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473] Length = 386 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 150/346 (43%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D+ +G + ++ + ++ + + F + ++ L +L S Sbjct: 3 EKTEQPTDKKVRDSAKKGQSFKGKDLIAAAVLVCGALAISGF--SSLTALGHLLQKVLLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 ++ K+ L L VIP LL ++ G+ L+Q L +K +F Sbjct: 61 PSEIKIS------AYLDELYRLFLYAVIPVLLCCLLPGMLLSLLQSRFRLATEALKINFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G K+I+ I L +K+ + ++ GT I + + A ++ Sbjct: 115 HLNPISGFKKIFGIRPLKELVKALLYLLAFGTSIYTFILLWRREVFMLYHAELEEMITQW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + L L +LD + LKM KQE+K E K++ G+P IK +K Sbjct: 175 GRLCIIFIFVFLASSLILLLLDTLTELFLFIKDLKMEKQEVKKEYKENEGDPQIKQARKE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 I R + + + +++ NPTH AL + + + + P+++ K QN A+ + A Sbjct: 235 IHREILSEETKNGIKNSQVVMANPTHIALGIYFDPSVAELPLIIVKAQNAQARAVIAYAE 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 E IP+ + LAR L++ I S I + ++ + ++ Sbjct: 295 EQGIPVVRDIPLARRLYRNNSIFSFIRDDDLLDIMNILIWLKRIEL 340 >gi|326404521|ref|YP_004284603.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum AIU301] gi|325051383|dbj|BAJ81721.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum AIU301] Length = 324 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 156/319 (48%), Gaps = 3/319 (0%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + +S+ L ++ + + L A ++ + + L +++ Sbjct: 1 MATLASLGVALAVMIGVLPSSAERLANTLASAFTRAAT--VDSGAGLSRALWQAGMASLG 58 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 + IP + I L+Q N + +F R++ GI +++ NL +S + Sbjct: 59 VFIPFAGAIALSAIVVSLLQTGFRTNWGAIGLNFARLNPLAGIGKLFGTPNLAASGQSIL 118 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 K+ +G + + + + + + ++L F ++ +L ++ +D Sbjct: 119 KLAAIGAALYVVMDARLHGLEAMLLGSEKTLLAAIFGSIVAILSAAVMIQVVSGAVDFVL 178 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 +++ + +KMS+QE+KDE K++ G+P ++ R K+ + + + A +RA ++ITNPT Sbjct: 179 VRNRFSTSVKMSRQEVKDEQKETDGDPHVRARIKAARSALAKRSLNVAMARAAVVITNPT 238 Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 HYA+AL Y + +AP +VAKG + A ++R +A E IPI P LAR+LF+Q + + Sbjct: 239 HYAVALEYRAGQAEAPKIVAKGADERAARIRDLAREARIPIVANPPLARALFQQ-DVETE 297 Query: 334 IPPVFYKAVAQLIYKIYHK 352 I P Y+AVA++I I+ Sbjct: 298 ILPEHYRAVAEIIAYIWKL 316 >gi|161502069|ref|YP_001569181.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863416|gb|ABX20039.1| hypothetical protein SARI_00086 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 356 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 145/321 (45%), Gaps = 8/321 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ K++ED+ +G + S++ + L + YL+ + S + +++ Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A ++ + D S V + + +IP +LL ++ L+Q VL +K + Sbjct: 60 AENFEQSMADYSLAVLGVG------LKYLIPFMLLCLVCSALPTLLQTGFVLATEALKLN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++ EG K+++S+ + + +K+ + + I + + ++ N I Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVMGIAV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + +++ L + +LD Y +KM K+E+K E+K+ GNP +K+++ Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + ++ + +I+ NPTH + + + P++ N A +R Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPFPMISVYETNQRALAVRSY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQ 327 A + +P+ + LARSLFK Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314 >gi|28628135|gb|AAO34619.1| HrcU [Erwinia chrysanthemi] Length = 347 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 147/333 (44%), Gaps = 9/333 (2%) Query: 24 NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83 +G S++ A L +L G+ + + + + L+ + + Sbjct: 4 KKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSRISDPFGHAADEV--- 60 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 + + + + + + ++ + IQ P+ + +K F R++ IK+++++ Sbjct: 61 FSEALVLLATFCLLTISVALLMRVVGGWIQYGPLFAVEALKLDFNRLNPINQIKQMFTMR 120 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 + + + + +K + + + + +++ + ++ ++ V L + Sbjct: 121 KITDMLTNLLKATTIWVVFWLVVIPQLEWLVELAYGDLNAFWKGVENVLKSVSCTTLSAL 180 Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH----KMM 259 L V D G + + + +M ++I++E K S G+P +K +KS+A+ + + Sbjct: 181 LALGVFDFGLQKYYFLKQQRMIHEDIRNEYKNSEGDPHMKGHRKSVAQEILNEPASPRAK 240 Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 A +++ NPT YA+AL Y + P ++ KG++ AK + A++ +P+ Sbjct: 241 PKVEDADLLLVNPTDYAVALFYRPGKTPLPRILLKGEDDQAKALIARAHQAGVPVIRFIW 300 Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 LAR+L++ VP IP + VAQ+ YK+ + Sbjct: 301 LARTLYR-VPEGHYIPRDTLQPVAQV-YKVLRQ 331 >gi|13449103|ref|NP_085319.1| Type III secretion protein [Shigella flexneri 5a] gi|31983539|ref|NP_858289.1| surface presentation of antigens protein SpaS [Shigella flexneri 2a str. 301] gi|60415918|sp|P0A1M8|SPAS_SHIFL RecName: Full=Surface presentation of antigens protein spaS; AltName: Full=Spa40 protein gi|60415919|sp|P0A1M9|SPAS_SHISO RecName: Full=Surface presentation of antigens protein spaS; AltName: Full=Spa40 protein gi|13310651|gb|AAK18475.1|AF348706_164 Type III secretion protein [Shigella flexneri 5a] gi|303896|dbj|BAA02832.1| spa40 [Shigella flexneri] gi|829083|dbj|BAA09165.1| ORF25 [Shigella sonnei] gi|12329100|emb|CAC05831.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella flexneri] gi|18462531|gb|AAL72303.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603911|gb|ADA76894.1| surface presentation of antigens protein SpaS [Shigella flexneri 2002017] Length = 342 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 69/343 (20%), Positives = 139/343 (40%), Gaps = 8/343 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G + ++ + IL ++ FFS + ++ Sbjct: 3 NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFSLSDVMLLYRYVIINDF 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L ++ + L+Q VL +K F Sbjct: 63 EINEGKYFFAVVIVFFKIIGFP--------LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ +G+K+I+SI + F KS + +I++ + + + ++ + Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIFSQVFSSVDGLYLIW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L F + +LD + + + M KQEIK E + G+ K+R++ Sbjct: 175 GRLFKDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHFETKSRRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +++ NPTH A+ + + AP + N A +RK A Sbjct: 235 LHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYAN 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E IP + LAR L+K S + V +LI + Sbjct: 295 EVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 337 >gi|74314954|ref|YP_313372.1| surface presentation of antigens protein SpaS [Shigella sonnei Ss046] gi|82524599|ref|YP_406194.1| surface presentation of antigens protein SpaS [Shigella dysenteriae Sd197] gi|187734501|ref|YP_001883219.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94] gi|194435373|ref|ZP_03067572.1| Spa40 [Shigella dysenteriae 1012] gi|32307049|gb|AAP79019.1| Spa40 [Shigella flexneri] gi|73858431|gb|AAZ91137.1| Spa40 [Shigella sonnei Ss046] gi|81243997|gb|ABB64706.1| Spa40 [Shigella dysenteriae Sd197] gi|187426997|gb|ACD06272.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94] gi|194416383|gb|EDX32553.1| Spa40 [Shigella dysenteriae 1012] gi|320182867|gb|EFW57742.1| surface presentation of antigens protein SpaS [Shigella flexneri CDC 796-83] Length = 342 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 69/343 (20%), Positives = 139/343 (40%), Gaps = 8/343 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G + ++ + IL ++ FFS + ++ Sbjct: 3 NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFSLSDVMLLYRYVIINDF 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L ++ + L+Q VL +K F Sbjct: 63 EINEGKYFFAVVIVFFKIIGFP--------LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ +G+K+I+SI + F KS + +I++ + + + ++ + Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIFSQVFSSVDGLYLIW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L F + +LD + + + M KQEIK E + G+ K+R++ Sbjct: 175 GGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHFETKSRRRE 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +++ NPTH A+ + + AP + N A +RK A Sbjct: 235 LHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYAN 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E IP + LAR L+K S + V +LI + Sbjct: 295 EVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 337 >gi|284007395|emb|CBA72801.1| type III secretion system protein SpaS [Arsenophonus nasoniae] Length = 345 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 153/343 (44%), Gaps = 8/343 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ KK++DA +G + S++ +++CLI+L + + T+ + + Sbjct: 2 SANKTEKPTPKKLKDAAQKGKSFKSKDL-----VISCLIFLGCLYLTNYINFTTIIEIWA 56 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + + F+L +A ++ +P L L ++ + + + Q + +K Sbjct: 57 NTLKNNHSITPLNYTFVL---FFTALKIFLPFLFLCILIIMLTTMAQTGFKIATKVLKFD 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+I+SI + +F+K+F+ II+ + I N + I N S+ Sbjct: 114 FNNLNPINGVKKIFSIRTIKDFIKTFLFIIIFFIVTYIYWNNNKKIIFSQIYLNIESVFI 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 V +I++LL + +LD Y LKM K E+K E K+ GNP IK+++ Sbjct: 174 VWKELVSNFIIILLLSSFIILILDAVAEYFIHIKDLKMDKNEVKREYKEQEGNPEIKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 K + + ++ + +I NPTH + + P++ N A R Sbjct: 234 KELHVEILSEQVKSDIESSKFMIANPTHIIIGIYLNPQIVAIPMVSVLETNQRALAARAY 293 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 A + +P+ E LAR ++ + S I V +++ + Sbjct: 294 AEKEGVPVIENIVLARRIYNTHQLYSFINLEEIGEVIKILSWL 336 >gi|285018286|ref|YP_003375997.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473504|emb|CBA16007.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 358 Score = 238 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 69/343 (20%), Positives = 148/343 (43%), Gaps = 5/343 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK D+ +G + + + ++ + + F F + L L S Sbjct: 3 EKTEKPTQKKRADSEKKGKSFKAADIGAMLLLIVGGVAIPFLFD---FDSIFSLFKLFGS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 A Q K D+ + L A + + +++ LIQ L + ++ F Sbjct: 60 AVQAK--DLPGPFAYVKTLGWVAVKGTVIFIVVCSFATTVPSLIQSRLTLAFDAIRFDFD 117 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+K++++I + +K+ + II + I + + + + ++ Sbjct: 118 ALNPANGLKKLFNIRVAKDLVKTLLYIITTSAAVAIFIHNHCRELFMTMRMPEFALCSEL 177 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + + + ++ + VLD Y + LKM K E+K EIKQS GNP +K+RQ+ Sbjct: 178 GHLAKYLCLYMIGMAIPVLVLDCLTEYFLYIHGLKMEKYEVKQEIKQSQGNPEVKSRQRQ 237 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 ++R + K+ E +T ++ NPTH A+ + P++ + + A+++ A Sbjct: 238 LSREVLSEKVKENVKGSTFVLANPTHIAIGIYADFKVAPFPMVSVREVDARAREVIDYAM 297 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + +P+ + LAR +F + + + + +++ + Sbjct: 298 KCGVPVLRDIPLARRIFDRTQRYQFVSTEDLEPIIRILTWLRQ 340 >gi|319795601|ref|YP_004157241.1| type III secretion exporter [Variovorax paradoxus EPS] gi|315598064|gb|ADU39130.1| type III secretion exporter [Variovorax paradoxus EPS] Length = 346 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 10/348 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +AP+ K++ +A G S + + A ++ ++ IYS+ Sbjct: 1 MAEKD------QAPTRKRLREARRRGEVAFSADVASTVG-FAAVLCAVWLGGHSIYSLLR 53 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L L A++T L+ H + +P + + + GI L Q + Sbjct: 54 EL-WLHATSTSLLSRPDDRFGELVLHTGEALLWGTVPIMGIAALAGIVGSLFQVGGMAAW 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P R++ EG KRI+S + +N +K +K +L+G ++ + + T L A Sbjct: 113 GRLVPDMNRMNPAEGFKRIFSTRSAINLLKMVLKTVLLGALMFLVVRGYLDTALKLGYAT 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P IL V + LL A + +D +H++ + +MS ++I+ E K+S G+P Sbjct: 173 PAGILAAGARMVLQAFGWALLVYALMAAIDYAHEHHEFIKQQRMSFEDIRQEHKESDGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 + + R++S + + + A+ +I + A+AL+Y+ + P ++A+G+ + Sbjct: 233 LTQARRRSAHFEAVYASLADRVRAASAVICS-ARVAVALQYLGERD-LPRVIARGEGEVG 290 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 ++R+ A E IP EPSLA L++ VP + AIP Y VA+L+ Sbjct: 291 AQIRRFASEGLIPTEFEPSLAERLYEDVPQDQAIPRSLYAPVARLLRW 338 >gi|323388139|gb|ADX60335.1| type III secretion protein RscU [Pseudomonas fluorescens] Length = 365 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 70/350 (20%), Positives = 158/350 (45%), Gaps = 11/350 (3%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 K A + KK++D +G S++ + A LF + L + Sbjct: 2 SDSGEKKHAATPKKLKDQRQKGQVAQSQDVGKLLVLTALSEIALFTAETSMQRFQQLLVM 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++ Q + + + LT + + L + + S IQ + +K Sbjct: 62 PMSRFGQPFVRALEEV---LTEGLIVFFSFALLMAGLAIAVKLISGWIQFGFLFAPESLK 118 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 +F R++ +K+++S ++ N + K +L+ I+ + ++ + +++ +++ S Sbjct: 119 LNFSRLNPISQVKQMFSAKSVTNLLMGLAKALLLALILYVVISPSLGALINLATSDLQSY 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + R +L L + L ++D+ H + ++M++ E+ E K G+P +K Sbjct: 179 ILALIILFRHLLHACLGLLLVLALIDMALQKHFFAKSMRMTQVEVVKEYKDMEGDPHVKG 238 Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +++++A+ + + + A +++ NPTH+A+AL Y + P+LV KG + A+ Sbjct: 239 QRRALAQQLAQEEPKVKLPKLEEADMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAEAR 298 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 K+ A ++P+ + LAR+L+++ + + IP +AVA +Y Sbjct: 299 KLIDRAKAADVPVIQCVWLARTLYEK-KLGANIPRETLQAVA----FLYR 343 >gi|293412209|ref|ZP_06654932.1| conserved hypothetical protein [Escherichia coli B354] gi|291468980|gb|EFF11471.1| conserved hypothetical protein [Escherichia coli B354] Length = 337 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 131/295 (44%), Gaps = 8/295 (2%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 +L +YL + F ++ + S L +L + + D + + + +IP L Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGIGWLKTIIPFL 52 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 L+ M I Q L +K F ++ G+KRI+ + + F+K+ + II Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFA 112 Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219 I + + + + + + S+L + +++ L + + + D Y + Sbjct: 113 LAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 +KM KQE+K E K+ GNP IK++++ + + ++ S + ++I NPTH A+ + Sbjct: 173 KDMKMDKQEVKREYKEQEGNPEIKSKRRERHQEILSEQLKSDVSNSRLMIANPTHIAIGI 232 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 + + P++ + N +A +RK A E IPI + LAR ++ + Sbjct: 233 YFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 287 >gi|312958831|ref|ZP_07773350.1| type III secretion system rscU [Pseudomonas fluorescens WH6] gi|311286601|gb|EFQ65163.1| type III secretion system rscU [Pseudomonas fluorescens WH6] Length = 365 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 158/344 (45%), Gaps = 7/344 (2%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 K S+KK+ D +G S++ + A LF + + + Sbjct: 2 SDSGEKKHLASAKKLRDQRKKGQVAQSQDVGKLLVLTAISEIALFTAETSLQRFQQLMVL 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 +A TQ + + ++ + S + L++ + + + S +Q + +K Sbjct: 62 PMARLTQPFVRTLEEVLLEGLLVFFSFALLMV---GVAITVKLISSWMQFGILFAPETLK 118 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 FKR++ +K+++S +L+N + S K L+G ++ + + + +++ +++ S Sbjct: 119 LDFKRLNPLSQLKQMFSAQSLMNLLMSIAKAFLLGLVVYLVVWPSLGALINLATSDLQSY 178 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 + R +L L + L ++D+ H + +++M++ E+ E K G+P +K Sbjct: 179 VLALIALFRYLLHACLGLLLVLALIDLVLQKHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238 Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +++S+A + + + A +++ NPTH+A+AL Y + P+LV KG + A+ Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEEADMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAGAR 298 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 ++ A ++P+ + LAR+L+ + IP +AVA + Sbjct: 299 RLIARAKAADVPVIQCVWLARTLY-TKKRGANIPRETLQAVALI 341 >gi|213859844|ref|ZP_03385548.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 242 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 120/244 (49%), Gaps = 2/244 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F + Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L R + D + I+ + L +A ++P + ++ + S ++ + + Sbjct: 60 MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++P F +++ GIKR++S +K+ +K LVG + L ++ M+ ++ + Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P + +A V ++++L + + D+ + KL+MS+Q+I+DE K+S G+P Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238 Query: 241 IIKN 244 +K Sbjct: 239 HVKG 242 >gi|293406351|ref|ZP_06650277.1| antigen surface presentation protein SpaS [Escherichia coli FVEC1412] gi|291426357|gb|EFE99389.1| antigen surface presentation protein SpaS [Escherichia coli FVEC1412] Length = 337 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 64/295 (21%), Positives = 131/295 (44%), Gaps = 8/295 (2%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 +L +YL + F ++ + S L +L + + D + + + +IP L Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGIGWLKTIIPFL 52 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 L+ M I Q L +K F ++ G+KRI+ + + F+K+ + II Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFA 112 Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219 I + + + + + + S+L + +++ L + + + D Y + Sbjct: 113 LAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 +KM KQE+K E K+ G+P IK++++ + + ++ S + ++I NPTH A+ + Sbjct: 173 KDMKMDKQEVKREYKEQEGSPEIKSKRRERHQEILSEQLKSDVSNSRLMIANPTHIAIGI 232 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 + + P++ + N +A +RK A E IPI + LAR ++ + Sbjct: 233 YFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 287 >gi|82940565|emb|CAJ44294.1| putative flagellar biosynthetic transmembrane protein FlhB [Rhizobium leguminosarum bv. viciae] Length = 213 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 151/203 (74%) Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 F KS K+++VG I+ L YF +D + ++P +IL +RK++I++L+ A + Sbjct: 1 FGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQTILVRMMAAMRKIIIVMLIATAIVA 60 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+ RAT+ Sbjct: 61 IADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATL 120 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F Q Sbjct: 121 VIANPTHYAVALRYAREENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQ 180 Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350 V I+S IP VFYKAVA+LI+++Y Sbjct: 181 VSIDSVIPSVFYKAVAELIHRVY 203 >gi|27376933|ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110] gi|12620529|gb|AAG60805.1|AF322012_110 RhcU [Bradyrhizobium japonicum] gi|27350075|dbj|BAC47087.1| RhcU protein [Bradyrhizobium japonicum USDA 110] Length = 345 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 149/347 (42%), Gaps = 7/347 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS + K P+ KK+ DA +G + S + S AC + ++ G Sbjct: 1 MS--STSEEKKLPPTPKKLRDARKKGQSARSSDLVSGVS--ACAGFGCLWWRAGAIEDKW 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 V L Q + + L L LS + + + + L + Sbjct: 57 QETVRLVDKLQEQPFTSAVPQALSGLLELSIATVAPLLAAAVTAALLANVLANGGFMFAS 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP +++ +G+KRI S + + K+ K++L+G I +++T ++ ++ ++ Sbjct: 117 EPLKPKLEKLDPIKGLKRIVSKRSAIELGKTLAKVVLLGAIFFLTVTASWKALV-YLPVC 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F V+ ++ + + D+ + ++M++ E K E K+ GNP Sbjct: 176 GMGCFGFVFTEVKLLIGIAAGAFLVGGLADLLIQRWLFMQDMRMTETEAKRENKEQQGNP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K + + + + SRAT+I+ P + LRY++ E PVLV +G+ A Sbjct: 236 QVKREHRRLRQESANEAPL-GISRATLILRGPATL-IGLRYVRGETGVPVLVCRGEGEAA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 ++ A + I E+ LAR L + + + +P ++++VA+ +Y Sbjct: 294 SQLLGEARALRLNIVEDNVLARQLLGKARLGNPVPSQYFESVAKALY 340 >gi|197286514|ref|YP_002152386.1| type III secretion system protein [Proteus mirabilis HI4320] gi|227357588|ref|ZP_03841941.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis ATCC 29906] gi|194684001|emb|CAR45289.1| putative type III secretion system protein [Proteus mirabilis HI4320] gi|227162298|gb|EEI47302.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis ATCC 29906] Length = 353 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 70/346 (20%), Positives = 141/346 (40%), Gaps = 8/346 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK++D+ +G + S+E +IYL F + LL Sbjct: 3 EKTEKPTQKKLDDSAKKGQSFKSKELVSGLVYFIGVIYL--FNQVKLDEFNQFYQSLLLH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 T L+ ++ L +V+P +++ + G L L +K F Sbjct: 61 PTGISLKSYVEVISKL------FFDIVLPIIIVTFLSGAIPSLFSSHFKLATEAIKIDFN 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G K+I+SI + +F+K+ + II+ + + + ++ A+ ++ Sbjct: 115 HINPISGFKKIFSIRTIKDFLKTILFIIIFLITCYVFMILHMGEVVILYRADLEGVIDKW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 V + + + + +L+I + + + M K E+K E K GNP IK+ ++ Sbjct: 175 CSLVVSFIFIFFILSIPILILNIIADFFLFIKDMMMEKHEVKQEHKNMEGNPEIKSVRRQ 234 Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + M ++ +I NPTH A+ + + P++ N A ++ A Sbjct: 235 LHQELLDEPMKRVIRDSSAVIVNPTHVAVGIYFDPDNGIMPIVSLSCTNAKALAVKAYAK 294 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354 + P+ P LAR L + + I V ++ + +I Sbjct: 295 KVGTPVIRYPELARKLHHKYHLFEVIIDQDLLDVMDVLIWLKRVEI 340 >gi|317012581|gb|ADU83189.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Lithuania75] Length = 302 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 77/275 (28%), Positives = 143/275 (52%), Gaps = 1/275 (0%) Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138 + L L+ L++P L++ ++ S ++Q + ++P F +++ G+K Sbjct: 17 SVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPKVIEPKFSKINPINGVKN 76 Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198 ++S+ L++ +K+ L + + + N L ++ Sbjct: 77 LFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKSKALLLISS 136 Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258 +L L +D+ Q+ + LKM+KQE+KDE KQ GNP IK + + + +KM Sbjct: 137 LLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKM 196 Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318 M+ +A +++TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E Sbjct: 197 MQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENK 255 Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +LAR L+K V +N+ IP ++AVA + ++ + Sbjct: 256 TLARELYKDVKLNATIPEELFEAVAIVFAQVAKLE 290 >gi|307947535|ref|ZP_07662868.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4] gi|307769353|gb|EFO28581.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4] Length = 350 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 65/349 (18%), Positives = 154/349 (44%), Gaps = 4/349 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D + K + + A +G S++ L L +++ + + ++ Sbjct: 1 MSGGDTSEEKNLPATEHTLRKAREKGQVAQSKDFVTMLITLGGLFFVIMAWPSFVRMFSN 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LN 119 L L Q +LED +F+++ L +IP +++ ++ I + ++ + + + Sbjct: 61 SLDFALR-GFQMELEDSYRPMFVVS--ILETLYSLIPLVVILVLTAILANILHKKGIPFS 117 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179 ++ + P FK+++ G K+++ + F S +K+++ + + + +L+ Sbjct: 118 MHPIVPDFKKINPASGFKKMFGARGMTEFSVSLLKVLIWFVVAGMFIWLALPAILNSPIC 177 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 + K+++ + + VLD+ + + KM++ ++K E+K++ GN Sbjct: 178 EFPCTTAVTNDLLIKIILAAAILLVIGGVLDLPLQEALFKKENKMTRTQLKKELKETMGN 237 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P K+ +K + + +I + A+ALR+ + P++VAKG+ Sbjct: 238 PEYKSARKEAHKEMTQVNTTAGKDATANLIVSGADMAIALRFHAEDTPVPIVVAKGRGEQ 297 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 ++ + ++PI EP LA+ LF+ + I ++ +A LI + Sbjct: 298 GDEILASGGQMSVPIEHEPELAQDLFRTLLPGQQIEERQFQKIALLIIR 346 >gi|317009219|gb|ADU79799.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7] Length = 302 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 131/248 (52%), Gaps = 1/248 (0%) Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 S ++Q + ++P F +++ G+K ++S+ L++ +K+ L + Sbjct: 44 AFLSNVLQFGWLFAPKVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFI 103 Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 + + N L ++ +L L +D+ Q+ + LKM+ Sbjct: 104 FSLFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMT 163 Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 KQE+KDE KQ GNP IK + + + +KMM+ +A +++TNPTHYA+AL++ E Sbjct: 164 KQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EE 222 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 + PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+AIP ++AVA + Sbjct: 223 HPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIV 282 Query: 346 IYKIYHKK 353 ++ + Sbjct: 283 FAQVAKLE 290 >gi|292899281|ref|YP_003538650.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199129|emb|CBJ46243.1| type III secretion system protein [Erwinia amylovora ATCC 49946] Length = 365 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 140/341 (41%), Gaps = 12/341 (3%) Query: 17 KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED 76 KK +D+ +G++ ++ ++++ +LL +L + + D Sbjct: 13 KKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMD--FSRFIDCYTNILIDVSSVNIND 70 Query: 77 ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 + + L P + + + G+ + L Q + +K +FK ++ EG+ Sbjct: 71 F------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIATQALKLNFKALNPVEGL 124 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 KRI+S+ + F+KS +++ + + L A ++ K + Sbjct: 125 KRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIVSMLSLTVKAV 184 Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256 + + + + D Y LKM K E+K E K+S GNP IK+ ++ + + Sbjct: 185 TIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSARRRAHQELLSG 244 Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316 + M A ++++I+ NPTH A+A+ + P + + N A+ + A + IP+ Sbjct: 245 EEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLVYAEKIGIPVVR 304 Query: 317 EPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354 L R L+K +S I A+ ++ + +I Sbjct: 305 NIFLTRRLYKSYVQHSFISLNDDDL-MAIMDILIWLRQVEI 344 >gi|237678814|emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii] Length = 345 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 72/341 (21%), Positives = 147/341 (43%), Gaps = 5/341 (1%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + K P+ KK+ DA +G + S + S A L L ++ G V L Sbjct: 5 SEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCL--WWRAGAIEDKWHETVRL 62 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 Q + + L L LS + + + + L ++ L +KP Sbjct: 63 IDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLKPK 122 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +++ +G+ RI S + + K+ VK++L+GT ++T ++ ++ ++ Sbjct: 123 LEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALV-YLPVCGMGCFG 181 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 F V+ + + + D+ + +++M++ E K E K+ GNP +K Sbjct: 182 LVFTEVKLLAGIAGGAFLVGGLTDLLIQRWLFLQEMRMTETEAKRENKEQQGNPQVKREH 241 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + + + + RA +I+T T + LRY++ E P+LV +G++ A K+ Sbjct: 242 RRLRQESANEAPL-GVHRANLILTGSTTL-VGLRYVRGETGVPILVCRGESETASKLLGE 299 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 A + + ++ LAR L + + +P +++AVA+ +Y Sbjct: 300 ARALGLKVVDDDVLARQLLGTAKLGNPVPSQYFEAVAKALY 340 >gi|227820507|ref|YP_002824478.1| translocation protein in type III secretion system, RhcU [Sinorhizobium fredii NGR234] gi|227339506|gb|ACP23725.1| translocation protein in type III secretion system, RhcU [Sinorhizobium fredii NGR234] Length = 345 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 150/349 (42%), Gaps = 11/349 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + K+ S KKI DA +G S + +L ++L + S+ Sbjct: 1 MSET--SEEKSLPASDKKIRDARRKGQVMHSPDMVSGIVVLFSTLFLFYVAP----SLQV 54 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQR-IPVL 118 + LL A+ + + + L+ ++ A V+P L + ++ + + + V Sbjct: 55 KIERLLDEASHIYERPFADVWYRLSTIAADALWTTVLPILGITIVAILATNVAITKGFVF 114 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 + + P F RV+ G+KRI S+ ++V+F K+ KI + + ++ + Sbjct: 115 SAEPLAPDFNRVNPASGLKRIASLKSVVDFGKALFKIAALSIAFAVVFHAGLGSLFQSPT 174 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + ++ + + + + +D+ + +++M++ E K E K + G Sbjct: 175 CGFACLHATSLSMLKTITSIAIAAFVVMGAVDLFLQRWLFLREMRMTRSESKREHKDTEG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+I+ ++ +AR + + A ++I ++ +RY++ E P++V + Sbjct: 235 DPLIRQERRKLAR--LLGTTKTGLAGAVLLIGEEGAVSVGIRYVRDETPVPIVVCRAFGP 292 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 A MR A IP + LA L + PI + +P ++ VA + Sbjct: 293 AASSMRAQARSRTIPFMADAKLAAEL-GKTPIGAPVPDRLFQEVANALV 340 >gi|13475308|ref|NP_106872.1| translocation protein in type III secretion system, hrcU [Mesorhizobium loti MAFF303099] gi|14026059|dbj|BAB52658.1| translocation protein in type III secretion system; HrcU [Mesorhizobium loti MAFF303099] Length = 345 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 75/346 (21%), Positives = 140/346 (40%), Gaps = 7/346 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D+ + KT A + KK+ DA +G P S + A L YL S Sbjct: 1 MS--DSSEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYLWLRGSAIEDKCRE 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L Q D + L+ L+ + + L + S L V +L Sbjct: 59 AL--LFVDKLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVLLASILANGGFVFSL 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F +++ +G+KR+ S ++V K+ K+ ++G + L + TM+ Sbjct: 117 EPMTPNFDKINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMVYLPF-C 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + ++ + + ++D+ + +++M+K E+ E+K G P Sbjct: 176 GMGCLGLVVTGAKLLIGIGAGALLAAGLIDLLVQRALFLREMRMTKTEVTRELKDQQGAP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K+ ++ I + AT+I T + LRY++ E PVLV + A Sbjct: 236 ELKSERRRIRDESADEPPL-GVHHATLIFKG-TAILIGLRYVRGETGVPVLVCRADGERA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 + A + I + LA L + + IP +++ VA+ + Sbjct: 294 SHLLSEARALRLEIVDNDVLAHQLIGKTQLGRPIPMQYFEPVARAL 339 >gi|330963711|gb|EGH63971.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 348 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 152/345 (44%), Gaps = 6/345 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K++ + KK+ DA +G S++ IL C + + + + Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58 Query: 65 LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNH 122 L+ +E + + LL H + +P + + + I + ++ R V ++ Sbjct: 59 LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITLPVVAVTVGAVILTNIVTMRGVVFSVEP 118 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++ Sbjct: 119 IQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + ++ ++ +L + +D+ + ++KMS E K E K G+P+I Sbjct: 179 CIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++ R RA+++I + + + +RY++ E P++V + + Sbjct: 239 KRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYVRGETPVPIVVCRAAPHDSAA 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + A I + + SLA ++ ++ +P ++AVA + Sbjct: 299 LLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAVADALV 343 >gi|237800778|ref|ZP_04589239.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023636|gb|EGI03693.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 348 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 153/344 (44%), Gaps = 4/344 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K++ + KK+ DA +G S++ IL C + + P + L Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLL-PRARAQVEALID 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNHV 123 L A D+ LL H + +P + + + I + ++ + V ++ V Sbjct: 62 LAALIYIEPFNDVWP--RLLDHAEQIVIGITLPVVAVTVGAVILTNIVTMKGVVFSVEPV 119 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 +P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++ Sbjct: 120 QPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVMLLGLAFYVVGRQALQALMESSRCGEGC 179 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 I + ++ ++ +L + +D+ + ++KMS E K E K G+P+IK Sbjct: 180 IESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMIK 239 Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303 ++ R +RA+++I + + + +RY++ E P++V + + + Sbjct: 240 RERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGETPVPIVVCRAAQHESAVL 299 Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 A I ++ + +LA S+ K+ +P ++AVA + Sbjct: 300 LAEATPLGIAVWPDAALAESIAKRSVAGDPVPENTFQAVADALV 343 >gi|330876191|gb|EGH10340.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 348 Score = 228 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 151/345 (43%), Gaps = 6/345 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K++ + KK+ DA +G S++ IL C + + + + Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58 Query: 65 LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNH 122 L+ +E + + LL H + +P + + I + ++ R V ++ Sbjct: 59 LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITLPVVAFTVGAVILTNIVTMRGVVFSVEP 118 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++ Sbjct: 119 IQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + ++ ++ +L + +D+ + ++KMS E K E K G+P+I Sbjct: 179 CIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++ R RA+++I + + + +RY++ E P++V + + Sbjct: 239 KRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYVRGETPVPIVVCRAAPHDSAA 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + A I + + SLA ++ ++ +P ++AVA + Sbjct: 299 LLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAVADALV 343 >gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88] Length = 539 Score = 228 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 137/275 (49%), Gaps = 1/275 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A ++KTE + K+++A +G S+E L ++L + + F I ++ + + Sbjct: 265 ASEDKTEEATPHKLQEARKKGQVAKSKEVGLAFTLLMSTLVISFLGQYAIENLQNVMTAF 324 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L +L + ++ ++ + + ++ +++P ++ M+ GI + IQ + +KP Sbjct: 325 LKDFMGMEL-NYKNLFYISLTIVMRSALIILPLIIPIMIMGIFANFIQTGFIFTKETLKP 383 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 K+++ G K+I+S LV +K + +VG + L +NY +L+ + +L Sbjct: 384 DIKKLNPVNGFKKIFSTRTLVELVKDLALVNVVGYVGYRFLKKNYIEILNLNNLRFPIML 443 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 K I L + + V D + ++ +KMSKQE+K+E KQ G+P IK + Sbjct: 444 KAFKGIAVKAFFNITLVMIFIAVGDFIFQKKKYKKDMKMSKQEVKEEFKQQEGDPQIKGK 503 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 + R +MM++ AT++ITNPTH A +L+ Sbjct: 504 IRQKQREMAMRRMMQSVPDATVVITNPTHIASSLK 538 >gi|323152631|gb|EFZ38907.1| flagellar biosynthetic protein flhB [Escherichia coli EPECa14] Length = 213 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 110/181 (60%) Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 M+ ++ +P + + +A V ++++L + + D+ + KL+MS+Q+I+DE Sbjct: 1 MMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDE 60 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 KQS G+P +K R + + R+ R +MM +A +I+ NPTHY++AL+Y + + AP +V Sbjct: 61 FKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVV 120 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG L+A ++R+I E+N+P E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 121 AKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 180 Query: 353 K 353 K Sbjct: 181 K 181 >gi|298487107|ref|ZP_07005157.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158350|gb|EFH99420.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 348 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 153/349 (43%), Gaps = 8/349 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + + K++ S KK+ DA +G S++ IL C + + + Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARA 54 Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118 + L+ +E + + LL H + +P + + + I + ++ R V Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVSAVILTNIVTMRGVVF 114 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++ Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 I + ++ ++ +L + +D+ + ++KMS E K E K G Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P++K ++ R RA+++I + + + +RY++ E P++V + + Sbjct: 235 DPMVKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + + A I + + SLA + ++ +P ++AVA + Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343 >gi|71736693|ref|YP_274734.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557246|gb|AAZ36457.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 348 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 153/349 (43%), Gaps = 8/349 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + + K++ S KK+ DA +G S+E IL C + + + Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQELVSGMVILMCTLCISVLLP----KARA 54 Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118 + L+ +E + + LL H + +P + + + I + ++ R V Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++ Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 I + ++ ++ +L + +D+ + ++KMS E K E K G Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK ++ R RA+++I + + + +RY++ E P++V + + Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + + A I + + SLA + ++ +P ++AVA + Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343 >gi|257487953|ref|ZP_05641994.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320324520|gb|EFW80597.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328893|gb|EFW84892.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330985219|gb|EGH83322.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008642|gb|EGH88698.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 348 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 153/349 (43%), Gaps = 8/349 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + + K++ S KK+ DA +G S++ IL C + + + Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLP----KARA 54 Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118 + L+ +E + + LL H + +P + + + I + ++ R V Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++ Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 I + ++ ++ +L + +D+ + ++KMS E K E K G Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK ++ R RA+++I + + + +RY++ E P++V + + Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + + A I + + SLA + ++ +P ++AVA + Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343 >gi|289624372|ref|ZP_06457326.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646629|ref|ZP_06477972.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868644|gb|EGH03353.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 348 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 153/349 (43%), Gaps = 8/349 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE + + K++ S KK+ DA +G S++ IL C + + + Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARA 54 Query: 61 DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118 + L+ +E + + LL H + +P + + + I + ++ R V Sbjct: 55 QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 ++ ++P KR++ EG KRI+++ NL+ F+K VK++L+ + + +++ Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 I + ++ ++ +L + +D+ + ++KMS E K E K G Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P+IK ++ R RA+++I + + + +RY++ E P++V + + Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLMIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + + A I + + SLA + ++ +P ++AVA + Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343 >gi|1648939|gb|AAB17687.1| putative [Sinorhizobium fredii] Length = 351 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 155/346 (44%), Gaps = 7/346 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D + K+ + KK+ DA G P S + ++ A L YL + + Sbjct: 1 MS--DTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKC 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +LL Q +++ L+ + L+ + + LF + + L R V +L Sbjct: 57 REALLLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSL 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+F++++ + +KR+ S + V K+ K++++G ++ + TM+ ++ Sbjct: 117 EPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV-YLPVC 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F ++++ + + ++D+ + +++M+K EIK E+K+ G P Sbjct: 176 GMGCFGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++ I + RAT++ T + LRY++ E P+LV + + A Sbjct: 236 ELKGERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 M + A + I ++ LA L + +AIP +++ +A+ + Sbjct: 294 SDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPIARAL 339 >gi|24251294|gb|AAN46413.1| HrcU [Xanthomonas oryzae pv. oryzae] Length = 277 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 112/254 (44%), Gaps = 2/254 (0%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 + KTE P+ KK+ DA +G P+S + + + + L+ + + + + + Sbjct: 2 SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 D + I L H+ + L++P L ++ G+ Q +L V P Sbjct: 62 D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ G+K+++S+ +L+N +K +K IL+G ++ + + ++ P I Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDISQ 179 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A+ T+ + + +L + D + + +MSK E K E K+S G+P IK ++ Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239 Query: 247 KSIARSRIRHKMME 260 K I + + Sbjct: 240 KGIRQGTGLRRPPP 253 >gi|254691439|ref|ZP_05154693.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str. 870] Length = 210 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 137/207 (66%) Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 F+KS K++ I+ + + D ++ +P ++ V ++L+ +L IA + Sbjct: 1 EFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATDPGALPEFLRKNVVRLLVANVLAIAAI 60 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 D+ WS W +L+M++QE+KDE+KQS G+P++K+R +S+ R R R +M+ A AT Sbjct: 61 AGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGRDRARRRMINAVPTAT 120 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 +I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+IP+FE+ LAR+L+K Sbjct: 121 LIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFEDVQLARALYK 180 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 QV ++ I P FYKAVA+LI I ++ Sbjct: 181 QVNVDQMIAPEFYKAVAELIRIINTRR 207 >gi|46203826|ref|ZP_00050927.2| COG1377: Flagellar biosynthesis pathway, component FlhB [Magnetospirillum magnetotacticum MS-1] Length = 196 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 113/193 (58%), Gaps = 1/193 (0%) Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220 + L + F P + L K++ +L A + + D + H+W + Sbjct: 1 MAGAILWHEHDRAESFAQLEPGAALQGTLSLALKMMGGMLAAYAGIALGDALYQRHRWRN 60 Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 +L+M+K+E+K E K+S G+P +K R + + +SR++ +MM A AT+++TNPTH+A+ALR Sbjct: 61 RLRMTKEEMKQEHKESEGSPEVKARIRQLRQSRLKKRMMAAVPTATVVVTNPTHFAVALR 120 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y APV VAKG + +A ++R +A EH++P+ E P LAR+L V +++ IP Y+ Sbjct: 121 YEAG-MAAPVCVAKGVDSLALRIRAVAAEHDVPVMENPPLARALHATVEVDAEIPAEHYR 179 Query: 341 AVAQLIYKIYHKK 353 AVA++I + + Sbjct: 180 AVAEVIGFVLRLR 192 >gi|330953285|gb|EGH53545.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 348 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 155/345 (44%), Gaps = 6/345 (1%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K++ + KK+ DA +G S++ IL C + + + + Sbjct: 3 ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58 Query: 65 LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNH 122 L+ A +E + + LL H + +P + + + I + ++ R V ++ Sbjct: 59 LIDLAALIYIEPFNDVWPRLLDHAEQIVIGITLPVVAVTVAAVILTNIVTMRGVVFSVEP 118 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++P KR++ EG KRI+++ NL+ F+K VK++L+G + + +++ Sbjct: 119 IQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 I + ++ ++ +L + +D+ + ++KMS E K E K G+P+I Sbjct: 179 CIESSFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238 Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302 K ++ R +RA+++I + + + +RY++ E P++V + + Sbjct: 239 KRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGETPVPIVVCRAAQHESAA 298 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 + A I ++ + SLA S+ K+ +P ++AVA + Sbjct: 299 LLADAAPLGIALWPDASLAESIAKRSVAGDPVPENTFQAVADALV 343 >gi|11276519|gb|AAG33887.1| HrcU [Pseudomonas syringae pv. tomato] Length = 311 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 5/299 (1%) Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPV 117 + L LLA + V L+ LS + + L M+ + S +Q + Sbjct: 1 MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL 60 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +K K++ K+++S N++N + S +K + +G + + T++ Sbjct: 61 FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA 120 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +++ + L+ + VL +IL + + ++D + KL+MS ++IK E KQS Sbjct: 121 NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE 180 Query: 238 GNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P +K ++ +A + + A A +++ NPTHYA+AL Y E P++ K Sbjct: 181 GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK 240 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G++ A + A + IP+ + LAR+L+K V + IP AV + + + Sbjct: 241 GEDEDALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 298 >gi|253990923|ref|YP_003042279.1| type III secretion system EscU protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782373|emb|CAQ85537.1| Putative type III secretion system EscU protein [Photorhabdus asymbiotica] Length = 346 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 68/353 (19%), Positives = 155/353 (43%), Gaps = 17/353 (4%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K P++KK+ D +G P + A SI+ I + F V Sbjct: 2 ESTEPKKYPPTAKKLRDLRKKGQFPKTELAEPTFSIVLFFISISLFI------------V 49 Query: 65 LLASATQRKLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 LL S +E I + + + +S + +++ + +F I ++++ VLN Sbjct: 50 LLFSDFNYWVEFIVYADLSSGFDAILVSLTVMMVFFAIAKFIFFIVNWVVINKVVLNTKG 109 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SANP 181 + + +++ G K + + N + ++++ + ++ + +NP Sbjct: 110 IGFNLDKINPVNGFKNTLGFDAITNSFRKVLELVFLIFLLKYVFDTYGVELNKLHKVSNP 169 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241 +Y + + ++++++ + +D + +++ K +M+ E+K+E+K + G+P+ Sbjct: 170 SFFVYDLVYYIGGASLLMVIYGICVGAVDFLFESYRFQKKNRMTMTEMKNEMKDTEGSPL 229 Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 IK ++ R + M + R T + NPTH + + Y + AP++++ N +A Sbjct: 230 IKMERRHKMRELMNEPMTKG-RRPTFALANPTHILVPICYEPEIDQAPIVLSIYTNDMAL 288 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353 R +PI E+ LAR + ++ I FY+ +A +I + KK Sbjct: 289 GKRSYYESLGVPIIEDKPLARKILHKMKRGENYIDKEFYRDIALIIVALNRKK 341 >gi|323975952|gb|EGB71046.1| FlhB HrpN YscU SpaS family protein [Escherichia coli TW10509] Length = 233 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 106/203 (52%) Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 K ++V ++ ISL N+ L + + V+ ++ ++D Sbjct: 1 MTAKSVVVLVMLWISLRNNFAAFLGLQALPFKLAMNEGLSLYASVMRNFVILFIFFALID 60 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 + + + LKM+KQE+K+E K G P +K R + + R ++ + +A ++IT Sbjct: 61 VPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVIT 120 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NPTHYA+AL+Y Q+ AP +VAKG + IA +R++A E+ + + E P LARS++ + Sbjct: 121 NPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQV 180 Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353 N IP Y+A+A ++ + K Sbjct: 181 NQQIPFQLYRAIAHVLTYVLQMK 203 >gi|261885614|ref|ZP_06009653.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 266 Score = 221 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 126/271 (46%), Gaps = 5/271 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ KTE P+ KK+EDA N+GN S++ S F ++L L+ + + Sbjct: 1 MADD---QEKTEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVN 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 ++ + H L +++P + M+ GI S ++Q + + Sbjct: 58 LYLYYQGLIGVEITREL--FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTV 115 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + P+F ++ +GI ++S+ L++ +K +K+ V + + + I + Sbjct: 116 EPIMPNFSKIDPIKGIANLFSLKKLIDAVKIILKVSAVFGVAFYFFLQFVKELPHTIFFS 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + L + + ++LL + + D+ +Q++ L+MSKQE+KDE KQ G+P Sbjct: 176 MFNQLLWLKEKMLILAGVMLLLFLIIAIADVFIVRYQYFKGLRMSKQEVKDEFKQMEGDP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITN 271 +K R + + R +MM+ A ++ITN Sbjct: 236 KVKGRIRQLQMQAARKRMMQNIPTADVVITN 266 >gi|16520047|ref|NP_444167.1| innermembrane protein RhcU; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2494576|sp|P55723|Y4YO_RHISN RecName: Full=Probable translocation protein y4yO gi|2182740|gb|AAB91954.1| innermembrane protein RhcU; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 345 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 151/342 (44%), Gaps = 7/342 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D + K+ + KK+ DA G P S + ++ A L YL + + Sbjct: 1 MS--DTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLGYL--WLRGSVIEDKC 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +LL Q +++ L+ + L+ + + LF + + L R V +L Sbjct: 57 REALLLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSL 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+F +++ + +KR+ S + V K+ K++++G ++ + TM+ ++ Sbjct: 117 EPMKPNFDKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV-YLPVC 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F ++++ + + ++D+ + +++M+K EIK E+K+ G P Sbjct: 176 GMGCFGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++ I + RAT++ T + LRY++ E P+LV + + A Sbjct: 236 ELKGERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 M + A + I ++ LA L + +AIP +++ + Sbjct: 294 SDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335 >gi|3603323|gb|AAC35808.1| hrp type III pathway protein [Pseudomonas syringae pv. glycinea] Length = 325 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 132/298 (44%), Gaps = 5/298 (1%) Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPV 117 L LLA + + + V L+ LS + + + M+ + S +Q + Sbjct: 15 VDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSNWMQIGFL 74 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 +K +++ K+++S N++N + S +K + +G + + + ++ Sbjct: 75 FAPKALKLDINKINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLA 134 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 +++ + + R +L +IL + + ++D + KL+MS ++IK E KQS Sbjct: 135 NSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSE 194 Query: 238 GNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAK 294 G+P +K ++ ++ + + A A +++ NPTHYA+AL Y E P++ K Sbjct: 195 GDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPCETPLPLIHCK 254 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 G++ A + A IP+ L R+L++ + IP +AV + + Sbjct: 255 GEDEEALALIARAKNAGIPVVHSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKMVRQL 311 >gi|19749331|gb|AAL98701.1| Y4yO [Sinorhizobium fredii] Length = 345 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 152/342 (44%), Gaps = 7/342 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D + K+ + KK+ DA G P S + ++ A L YL + + Sbjct: 1 MS--DTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKC 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +LL Q +++ L+ + L+ + + LF + + L R V +L Sbjct: 57 REALLLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSL 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +KP+F++++ + +KR+ S + V K+ K++++G ++ + TM+ ++ Sbjct: 117 EPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV-YLPVC 175 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 F ++++ + + ++D+ + +++M+K EIK E+K+ G P Sbjct: 176 GMGCFGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTP 235 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +K ++ I + RAT++ T + LRY++ E P+LV + + A Sbjct: 236 ELKGERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342 M + A + I ++ LA L + +AIP +++ + Sbjct: 294 SDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335 >gi|304415257|ref|ZP_07395954.1| putative type III secretion system protein [Candidatus Regiella insecticola LSR1] gi|304282883|gb|EFL91349.1| putative type III secretion system protein [Candidatus Regiella insecticola LSR1] Length = 385 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 143/349 (40%), Gaps = 12/349 (3%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 NKTE P+ KK++D+ +G + S++ + IL YL+ S + ++ Sbjct: 2 SSNKTEKPTQKKLKDSAKKGQSFKSKDFIIACLILCGAQYLISMGS--FVELMGAYRRVI 59 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 A+ + + T + ++++P +LL + L+Q V+ +K + Sbjct: 60 ANDFDYDIHRYT------TAVLWIGLQILLPIILLCVFASALPTLLQTGFVIATKALKFN 113 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F ++ +G K+I+S+ + +KS + + + + + P+ + Sbjct: 114 FGAINPAKGFKKIFSLRTAKDAVKSLLYLATFFISALLVWHNKKGLLFQQLHGTPYDMTV 173 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 ++ ++ L+ I + +LD + + LKM KQE K E+K+ GNP IK+++ Sbjct: 174 VWGELLQAIIFTCLVCIIIILILDALAEFFLYIKDLKMDKQEFKREMKEQDGNPEIKSKR 233 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA----PVLVAKGQNLIAKK 302 + + + ++ + II NPTH A+ + Y A P+ G Sbjct: 234 RELHSELLSEQIKSDVKNSNFIIANPTHIAVGIYYRPDPETASITIPLCFGIGNQSACIS 293 Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + + ++ LAR + K S I + QL+ ++ Sbjct: 294 GKGVCQKNGCSYHPNVPLARRILKTHKRYSFISLDAIDEIIQLMIWLHQ 342 >gi|262360426|gb|ACY57147.1| type III secretion apparatus protein [Yersinia pestis D106004] Length = 215 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 92/198 (46%) Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 MKS +K+ ++ I L + + L + +L ++ ++ Sbjct: 1 MKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSL 60 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268 +D + + +LKMS E+K E K S G+P IK +++ + R+T + Sbjct: 61 MDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQHEVQSGSFATNVRRSTAV 120 Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + NPTH+A+ L Y E P+++ KG + A + +A + IP+ E +LAR+L + V Sbjct: 121 VRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDV 180 Query: 329 PINSAIPPVFYKAVAQLI 346 IP F++ VA L+ Sbjct: 181 ACGDTIPEQFFEPVAALL 198 >gi|145298359|ref|YP_001141200.1| flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851131|gb|ABO89452.1| Flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp. salmonicida A449] Length = 281 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 4/217 (1%) Query: 139 IYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 ++ + + + VKI+ +G + + M + A ++Y + +LI Sbjct: 42 VFGLLMVKESLASAMVKILTIGFTLDRDQAFDPNAMGAMLPALLRELVYPLG--LLWMLI 99 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257 ++ + + +D+ + +LKM+KQE+KDE K S G P +K R + + + Sbjct: 100 ILCCALIPIVAIDVPFQTWNHTRQLKMTKQEVKDEFKDSEGKPEVKGRIRQLQMQMAMRR 159 Query: 258 MMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316 MM +A +IITNPTHY++AL+Y AP +VAKG + IA K+R+IA E+ IPI Sbjct: 160 MMGDVPKADVIITNPTHYSVALKYDIAKPGAAPKVVAKGTDEIAMKIREIAREYEIPIMP 219 Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 P+L R++F I IP + AVAQ++ IY K Sbjct: 220 SPALTRAIFHSTEIGHEIPEGLFAAVAQVLAYIYQLK 256 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 4/123 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ D +TE P+ K+++ A +G S+E S++LA + LL ++ Sbjct: 1 MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASALLAAVFGLLMVKESLASAMVK 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYLIQRIPVLN 119 L + + + + D + + +L L + + +L+ + + + +P Sbjct: 59 ILTIGF-TLDRDQAFDPNAMGAMLPALLRELVYPLGLLWMLIILCCALIPIVAIDVPFQT 117 Query: 120 LNH 122 NH Sbjct: 118 WNH 120 >gi|12083752|dbj|BAB20911.1| putative HrpN [Acidovorax avenae subsp. avenae] Length = 214 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 1/203 (0%) Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 F KS +K ++ G ++ +T ++ + P + A+ + K+ L + Sbjct: 1 EFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIAWSALLKLFSFAFLVFLVI 60 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266 LD G + + +MSK ++K E K S G+P +K KS+ E AT Sbjct: 61 GPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKSLREEMATSPPQERVPGAT 120 Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 +++TNPTHYA+ALRY P++VAKG + A +R +A H+IP+ P LAR+L K Sbjct: 121 VVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHK 180 Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349 +P++ IP ++AV+ ++ + Sbjct: 181 -LPLDQPIPEELFEAVSVVLRWV 202 >gi|321472934|gb|EFX83903.1| hypothetical protein DAPPUDRAFT_315303 [Daphnia pulex] Length = 217 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 122/210 (58%), Gaps = 1/210 (0%) Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 +V F+K F K++++ TI + F F S P I+ A + ++L+ ++ + Sbjct: 1 MVEFLKGFGKLVIILTIAFFIFGKTNFPFQPFGSLAPQVIMPEASRLILQILLSLIAAMG 60 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHKMMEATS 263 L LD G+ + + + +L MS+QE+KDE K + + +RQ+ + + + + Sbjct: 61 VLAALDYGYQWFRVFRELYMSRQELKDEHKDLEKDASVISRQRQMQKELAQMRSLGDKIP 120 Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323 +AT++ITNPTHYA+ALR+ E AP ++AKG + +A+++R++A H +P+ E P LA++ Sbjct: 121 KATVVITNPTHYAVALRWNPREMSAPQVIAKGTDRVAQRIRELAQHHFVPLVENPPLAQA 180 Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 L+K V I I P Y+AV+++I + + Sbjct: 181 LYKSVKIGQEISPEHYRAVSEVIRYVLRIQ 210 >gi|332669212|ref|YP_004452220.1| type III secretion exporter [Cellulomonas fimi ATCC 484] gi|332338250|gb|AEE44833.1| type III secretion exporter [Cellulomonas fimi ATCC 484] Length = 400 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 70/353 (19%), Positives = 150/353 (42%), Gaps = 9/353 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE ++TE + +++ + +G S++ S + + A L + Sbjct: 1 MSE---GGDRTEKATPQRMREIRRKGGLGRSQDLSAWVGLGAAAAVLPLVVDRARAAALD 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + A D + +V +L + ++P + ++ + Q L Sbjct: 58 QMAAFRDVAAD---PDGTDVVQVLGDGLGTILTTLLPLFAVGVVAAVAVSAAQGGVHL-- 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + ++ + + R+ +K+ +K V ++ ++ +L Sbjct: 113 HRLRLHADHLKPKGVASRLVGGQAWWQGIKTLLKTAAVALVLLAAVQAIAPALLASGRLP 172 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 ++ A +L + L V D+ + + + +M+ +E+K+E K++ G+P Sbjct: 173 LSHLIGIATDGTATLLRTGIAAGVLLAVADVVVVWRRNRKQTRMTLREVKEEHKRTEGDP 232 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++K +S + R++MM + A +++ NPTH A+ALRY AP +VAKG +A Sbjct: 233 MLKGAIRSKQLAMSRNRMMAEVANADVVLVNPTHVAVALRYEPG-TGAPRVVAKGAGAVA 291 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 K+R A + +P+ E+ LAR+L + IP + AVA+++ + + Sbjct: 292 AKIRSAASDARVPMVEDVPLARALHAACELGQEIPAHLFTAVARVLAFVMALR 344 >gi|256370976|ref|YP_003108800.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331] gi|256007560|gb|ACU53127.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331] Length = 390 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A TE P+ +K+E A EG S + F +L F + + + + Sbjct: 2 ARQEGTEEPTPRKLERARKEGMVARSVDLVSFVVLLIA----SFALPLAVRDASVRIGDV 57 Query: 66 LASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A+A + S L +LV P ++ ++ L Q ++ Sbjct: 58 AAAAWSGAIPATSAGALRFLGTGLDLVVQLVGPVAVVAVVIVAVGNLAQVGLRFVPKRLR 117 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 P + S ++RI+S + K+ VK++ + ++ + M S+ + Sbjct: 118 PRAETFSPAANLRRIFSAQPGIEVAKAIVKLVATAAVAAAIVSSSIDAMAQGASSPLAAA 177 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244 A ++ V ++ +L + ++D+ +L+M++ E++DE+++ G+ +K Sbjct: 178 DAAAGASLELVRVVAVLGVVL-GIVDLVRQRRSLRRRLRMTRHEVRDELREHEGDLAVKA 236 Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 R++ +AR +R M+ ++A +++ NPTH A+ALRY + AP +VAKG + +A +R Sbjct: 237 RRRRLAREFVRRAMLADVAQADVVVVNPTHVAVALRYDPRRDRAPTVVAKGLDHLAMTIR 296 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + A +PI E+P LAR ++ + IP + VA+L+ +Y Sbjct: 297 ERARAARVPIVEDPPLARVVYVASRVGEPIPASLFLVVARLLAFVYRL 344 >gi|85060041|ref|YP_455743.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] gi|84780561|dbj|BAE75338.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 2/247 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D K+EAP+ + E A EG P SRE + +L L + + + Sbjct: 1 MAE-DIDLEKSEAPTQHRQEKAREEGQIPRSRELTSMLMLLVGCAMLWLDGAYLARQLAA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + + L +I ++ +G+ ++ N Sbjct: 60 MLAQGL-HFDHGLIGKDRQSLTAAAPLLSQTVLALISLFAGLILVALGAPMLLGGITFNP 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +K K+V+ G+KR++S L K+ +K ++ G + L N+ ML + Sbjct: 119 SLIKFDIKKVNPLSGLKRMFSSQVLAELFKAILKAVVFGCVTGSFLWHNWPRMLHLVMEP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L A + + ++ I++ ++ + D+ W KL+M +Q+I+DE K G+P Sbjct: 179 AVPALGDAMWIITACMLFIIVGLSPIVGFDVFWQLWSHLKKLRMIRQDIRDEFKNQEGDP 238 Query: 241 IIKNRQK 247 +KNR + Sbjct: 239 HVKNRIR 245 >gi|115379113|ref|ZP_01466237.1| translocation protein in type III secretion [Stigmatella aurantiaca DW4/3-1] gi|115363896|gb|EAU63007.1| translocation protein in type III secretion [Stigmatella aurantiaca DW4/3-1] Length = 265 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 1/256 (0%) Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 L P L ++ + L LN+ HV P+ +R+S G KR+ S+ V +K Sbjct: 1 MLGLSGPALGGALVASLAVSLAVAGVGLNMEHVAPNLERISPFAGWKRLLSVRAGVEGLK 60 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + + ++ ++ + E L + L H + +L+ + + L D Sbjct: 61 ALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVHLLDRLEPLLLRLSGCLLLLGGAD 120 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270 + + + L MS++E+K E ++S G+P K ++K++ R + +A+ ++ Sbjct: 121 YALARARHFKDLCMSREEVKREYQESEGDPRHKAQRKALHRQLAQGGSARGVRKASAVVI 180 Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NPTH A+ALRY E +AP LVAK Q A +R A IP+ + LARSL + Sbjct: 181 NPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEAQRRGIPVVRDVPLARSLI-SYDV 239 Query: 331 NSAIPPVFYKAVAQLI 346 IP Y+A A ++ Sbjct: 240 GEQIPEELYQAAAAVL 255 >gi|330862333|emb|CBX72493.1| hypothetical protein YEW_GP28240 [Yersinia enterocolitica W22703] Length = 225 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 102/194 (52%) Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219 + + + + +L + + F +L+ + I +DI S + + Sbjct: 3 YTLYLMVKNSLPDLLRLQALPLQEAITEGFTLYHGILVYFIAIIVIFAAIDIPLSNYLFT 62 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279 K+KM+KQE+K E K + GNP IK R + + R ++ + A +IITNPTH+++AL Sbjct: 63 KKMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQFAMGQINKTVPNADVIITNPTHFSVAL 122 Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 +Y + AP ++AKG++ IA +R +A ++I I E P LAR+++ +N +P Y Sbjct: 123 KYAPEKASAPYIIAKGKDDIALYIRTVAKNNDIEIVEFPPLARAIYHTTKVNQQVPAQLY 182 Query: 340 KAVAQLIYKIYHKK 353 +A AQ++ + K Sbjct: 183 RATAQVLTYVMQVK 196 >gi|153836050|ref|ZP_01988717.1| VcsU2 [Vibrio parahaemolyticus AQ3810] gi|149750804|gb|EDM61549.1| VcsU2 [Vibrio parahaemolyticus AQ3810] Length = 351 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 67/365 (18%), Positives = 149/365 (40%), Gaps = 34/365 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ + K P+ KK+ D +G P + A + + Sbjct: 1 MAE-ESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLEL-----------IVFTIIIIF 48 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119 L+ L + + + + + + + GL L ++ I +++ V++ Sbjct: 49 TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAIFEWVMINKAVIS 108 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTEN 169 + +++ G K I+ + + +SF K++ V ++ L Sbjct: 109 TESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY-- 163 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 +L+ I+ P+ +Y+ +++ + L++ + +D + + K +M+ E+ Sbjct: 164 ---LLNEINNYPY-FIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 219 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E+K++ G+P IK+ +K R + + + T + NPTH + + Y P Sbjct: 220 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 278 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYK 348 V++ +A + RK IPI E LAR+++ ++ +P F+ VA +I Sbjct: 279 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISY 338 Query: 349 IYHKK 353 + K Sbjct: 339 LKRLK 343 >gi|260362767|ref|ZP_05775636.1| protein VcsU2 [Vibrio parahaemolyticus K5030] gi|260880055|ref|ZP_05892410.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034] gi|260895172|ref|ZP_05903668.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466] gi|308085801|gb|EFO35496.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466] gi|308091813|gb|EFO41508.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034] gi|308112085|gb|EFO49625.1| protein VcsU2 [Vibrio parahaemolyticus K5030] Length = 351 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 149/365 (40%), Gaps = 34/365 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ + K P+ KK+ D +G P + A + + Sbjct: 1 MAE-ESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLEL-----------IVFTIIIIF 48 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119 L+ L + + + + + + + GL L ++ + +++ V++ Sbjct: 49 TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAVFEWVMINKAVIS 108 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTEN 169 + +++ G K I+ + + +SF K++ V ++ L Sbjct: 109 TESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY-- 163 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 +L+ I+ P+ +Y+ +++ + L++ + +D + + K +M+ E+ Sbjct: 164 ---LLNEINNYPY-FIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 219 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E+K++ G+P IK+ +K R + + + T + NPTH + + Y P Sbjct: 220 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 278 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYK 348 V++ +A + RK IPI E LAR+++ ++ +P F+ VA +I Sbjct: 279 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISY 338 Query: 349 IYHKK 353 + K Sbjct: 339 LKRLK 343 >gi|28901209|ref|NP_800864.1| putative type III secretion system EscU protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809722|dbj|BAC62697.1| putative type III secretion system EscU protein [Vibrio parahaemolyticus RIMD 2210633] Length = 352 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 149/365 (40%), Gaps = 34/365 (9%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ + K P+ KK+ D +G P + A + + Sbjct: 2 MAE-ESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLEL-----------IVFTIIIIF 49 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119 L+ L + + + + + + + GL L ++ + +++ V++ Sbjct: 50 TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAVFEWVMINKAVIS 109 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTEN 169 + +++ G K I+ + + +SF K++ V ++ L Sbjct: 110 TESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY-- 164 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 +L+ I+ P+ +Y+ +++ + L++ + +D + + K +M+ E+ Sbjct: 165 ---LLNEINNYPY-FIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 220 Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289 K+E+K++ G+P IK+ +K R + + + T + NPTH + + Y P Sbjct: 221 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 279 Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYK 348 V++ +A + RK IPI E LAR+++ ++ +P F+ VA +I Sbjct: 280 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISY 339 Query: 349 IYHKK 353 + K Sbjct: 340 LKRLK 344 >gi|229529200|ref|ZP_04418590.1| Type III secretion inner membrane protein [Vibrio cholerae 12129(1)] gi|229332974|gb|EEN98460.1| Type III secretion inner membrane protein [Vibrio cholerae 12129(1)] Length = 350 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 70/362 (19%), Positives = 152/362 (41%), Gaps = 33/362 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + K P+ KK+ D +G P + A ++ I ++F L+ Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIF-----------TLY 50 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNH 122 L + + + + + + I GL L ++ I +++ V++ Sbjct: 51 YLFEYSGEWLSAVLYADIDVGLATGVDVLWWCIGGLALLKLVMAIFEWVMINKAVISTEA 110 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTENYFT 172 + +++ G K I+ + + +SF K++ V ++ L + Sbjct: 111 LGLKMDKINPVNGAKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLYQ---- 163 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 L+ I+ P+ +Y+ ++V L++ + +D + + K +M+ E+K+E Sbjct: 164 -LNEINNYPY-FIYYLMYSVGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNE 221 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K++ G+P IK +K R + + + R T + NPTH + + Y PV++ Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVL 280 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYH 351 +A + RK +IPI E LAR+++ ++ +P F++ VA +I + Sbjct: 281 KICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVIISNLKR 340 Query: 352 KK 353 +K Sbjct: 341 QK 342 >gi|229515162|ref|ZP_04404622.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21] gi|254285284|ref|ZP_04960249.1| VcsU2 [Vibrio cholerae AM-19226] gi|71480619|gb|AAZ32241.1| VcsU2 [Vibrio cholerae non-O1/non-O139] gi|150424556|gb|EDN16492.1| VcsU2 [Vibrio cholerae AM-19226] gi|229347867|gb|EEO12826.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21] Length = 350 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 69/362 (19%), Positives = 152/362 (41%), Gaps = 33/362 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + K P+ KK+ D +G P + A ++ I ++F L+ Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIF-----------TLY 50 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNH 122 L + + + + + + I GL L ++ I +++ V++ Sbjct: 51 YLFEYSGEWLSAVLYADIDVGLATGVDVLWWCIGGLALLKLVMAIFEWVMINKAVISTEA 110 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTENYFT 172 + +++ G K I+ + + +SF K++ V ++ L + Sbjct: 111 LGLKMDKINPVNGAKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLYQ---- 163 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 L+ I+ P+ +Y+ +++ L++ + +D + + K +M+ E+K+E Sbjct: 164 -LNEINNYPY-FIYYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNE 221 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K++ G+P IK +K R + + + R T + NPTH + + Y PV++ Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVL 280 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYH 351 +A + RK +IPI E LAR+++ ++ +P F++ VA +I + Sbjct: 281 KICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVIISNLKR 340 Query: 352 KK 353 +K Sbjct: 341 QK 342 >gi|254224928|ref|ZP_04918543.1| Type III secretory pathway, component EscU [Vibrio cholerae V51] gi|125622616|gb|EAZ50935.1| Type III secretory pathway, component EscU [Vibrio cholerae V51] Length = 350 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 68/362 (18%), Positives = 153/362 (42%), Gaps = 33/362 (9%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 ++ + K P+ KK+ D +G P + A ++ I ++F L+ Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIF-----------TLY 50 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNH 122 L + + + +++ + I GL L ++ I +++ V++ Sbjct: 51 YLFEYSGEWLSAVLYADIYVGLATGVDVLWWCIGGLALLKLVMVIFEWVMINKAVISTEA 110 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTENYFT 172 + +++ G K I+ + + +SF K++ V ++ L + Sbjct: 111 LGLKMDKINPVNGAKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLYQ---- 163 Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 L+ I+ P+ +Y+ +++ L++ + +D + + K +M+ E+K+E Sbjct: 164 -LNEINNYPY-FIYYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNE 221 Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292 +K++ G+P IK +K R + + + R T + NPTH + + Y PV++ Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVL 280 Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYH 351 +A + RK +IPI E LAR+++ ++ +P F++ +A +I + Sbjct: 281 KICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDIAVIISNLKR 340 Query: 352 KK 353 +K Sbjct: 341 QK 342 >gi|262274307|ref|ZP_06052118.1| type III secretion inner membrane protein HrpY [Grimontia hollisae CIP 101886] gi|262220870|gb|EEY72184.1| type III secretion inner membrane protein HrpY [Grimontia hollisae CIP 101886] Length = 344 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 72/366 (19%), Positives = 154/366 (42%), Gaps = 43/366 (11%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57 ++ + K P+ KK+ D +G P + E +F+ I+ +Y LF +S +S Sbjct: 2 EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTVIIILALYYLFEYSSEWFS 61 Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 +L + Q L+ +++ + LL ++ +++ V Sbjct: 62 ------AILQADVQVGLDSGYDVLW----------WCIGGLALLKLVMAAFEWVMINKAV 105 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLT 167 ++ + +++ G K I+ I + +S KI+ V ++ L Sbjct: 106 VSTEALGLKMDKINPVNGAKNIFGIEAIS---RSLRKILELLFLLFLLKYVADVLGSKLY 162 Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + I+ P+ +Y+ ++ + L+F + +D + + K +M+ Sbjct: 163 QLHE-----INNYPY-FIYYLMLSILAASVFYLIFGVCVGTVDFMAEKYHFMQKNRMTFT 216 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E+K+E+K++ G+P IK +K R + + + R + NPTH + + Y Sbjct: 217 EMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPNFALANPTHILVPICYDPKIER 275 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLI 346 PV++ +A + R +IPI E LAR+++ ++ +PP F++ VA +I Sbjct: 276 VPVVLKICTESLALEERSRLETMDIPIIENVPLARAIYTKMKQGEDFLPPEFFRDVAIII 335 Query: 347 YKIYHK 352 ++ K Sbjct: 336 SRLKRK 341 >gi|86157785|ref|YP_464570.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] gi|85774296|gb|ABC81133.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] Length = 355 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 85/351 (24%), Positives = 165/351 (47%), Gaps = 7/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + +N+TE S++++ A +EG P+ +A+L + + + L+ + Sbjct: 1 MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALTLVAQARGLGGGLAE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + S + + + +LS + G + L Q Sbjct: 61 LMRHAAGSVDRAPFATLPALAARPAAAALSVCA-------AAALAGAAATLAQTRGGCWP 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P R+ + R S + L++ + K+ +G + + + + A Sbjct: 114 RLAAPDPSRLLQPGRLLRPLSRDFLLDLALALAKVGAIGAAAWSAARDGVARLPALLGAA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L F V +V + +LL A L + ++G + ++ K +M+K E K E+K+ G+P Sbjct: 174 PGEQLALVFSLVARVALPVLLAAAALALAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ R++ R +R++ RA ++ NPTH A+ALRY + E AP + AKG+ +A Sbjct: 234 LVRGRRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++MR +A EH +P+ ++ LAR L+++V + IP YKAVA ++ +Y Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344 >gi|153215439|ref|ZP_01950023.1| VcsU2 [Vibrio cholerae 1587] gi|153827954|ref|ZP_01980621.1| VcsU2 [Vibrio cholerae 623-39] gi|124114733|gb|EAY33553.1| VcsU2 [Vibrio cholerae 1587] gi|148876535|gb|EDL74670.1| VcsU2 [Vibrio cholerae 623-39] Length = 346 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 68/357 (19%), Positives = 148/357 (41%), Gaps = 25/357 (7%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K P+ KK+ D +G P + A + I ++ L Sbjct: 2 ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFIFCIIIVI-----------TLFN 50 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNHV 123 L A + I + + S I L+ F ++ + +++ V++ + Sbjct: 51 LFEYANEWITSAIQSDINVGIDNMFSILGYAIGFLMFFKIVMAVFEWVMINKSVISTEAL 110 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT------IITISLTENYFTMLDFI 177 +++ G K I+ I + +S K++ + + L + + + Sbjct: 111 GFKIDKINPVNGAKNIFGIEAIS---RSSRKVLELLFLLFLLKYVFDVLGSELYKLNEIN 167 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 + +Y+ +++ V + L++ + +D + ++ K +M+ E+K+E+K++ Sbjct: 168 NYP--YFIYYLLYSIGAVSLFYLVYGVCIGSVDYLAEKYHFHQKNRMTFTEMKNELKETE 225 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297 G+P IK ++ R ++ + + + T + NPTH + + Y PV++ Sbjct: 226 GSPEIKYERRRRMREVMKTPVKKG-RKPTFALANPTHILVPIYYDPKVEKIPVVLKISTE 284 Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHKK 353 +A RK E IPI E LARSL++++ +P FY+ VA +I + +K Sbjct: 285 SLALAERKRLEEQGIPIIENIPLARSLYRKMKSGEDFLPKEFYRDVAVIISTLNRQK 341 >gi|220917693|ref|YP_002492997.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] gi|219955547|gb|ACL65931.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] Length = 355 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 166/351 (47%), Gaps = 7/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + +N+TE S++++ A +EG P+ +A+L + + + L ++ Sbjct: 1 MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALALGAQARALGGGLSE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + AS + L L+L + + + G + L Q Sbjct: 61 LMRQAAASVDRTPFSS-------LPALALRPASAALAVCAAAALAGAAATLAQTRGGFWP 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P R+ + R S + L++ + K+ +G + + + + A Sbjct: 114 RLAAPDPSRLLQPGRLLRPLSRDFLLDLALALAKVAALGAAAWTAARDGLARLPALLGAA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L F V +V + +LL A L ++G + ++ K +M+K E K E+K+ G+P Sbjct: 174 PGEQLAMVFALVARVALPVLLAAAALAAAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ +++ R +R++ RA ++ NPTH A+ALRY + E AP + AKG+ +A Sbjct: 234 LVRGQRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++MR +A EH +P+ ++ LAR L+++V + IP YKAVA ++ +Y Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344 >gi|197122901|ref|YP_002134852.1| type III secretion exporter [Anaeromyxobacter sp. K] gi|196172750|gb|ACG73723.1| type III secretion exporter [Anaeromyxobacter sp. K] Length = 355 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 166/351 (47%), Gaps = 7/351 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ + +N+TE S++++ A +EG P+ +A+L + + + L ++ Sbjct: 1 MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALALGAQAHALGGGLSE 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 + AS + L L+L + + + G + L Q Sbjct: 61 LMRHAAASVDRTPFSS-------LPALALRPATAALAVCAAAALAGAAATLAQTRGGFWP 113 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P R+ + R S + L++ + K+ +G + + + + A Sbjct: 114 RLAAPDPSRLLQAGRLLRPLSRDFLLDLALALAKVAALGAAAWTTARDGLARLPALLGAA 173 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 P L F V +V + +LL A L ++G + ++ K +M+K E K E+K+ G+P Sbjct: 174 PGEQLAVVFALVARVALPVLLAAAALAAAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233 Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 +++ +++ R +R++ RA ++ NPTH A+ALRY + E AP + AKG+ +A Sbjct: 234 LVRGQRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293 Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 ++MR +A EH +P+ ++ LAR L+++V + IP YKAVA ++ +Y Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344 >gi|304412856|ref|ZP_07394454.1| type III secretion exporter [Shewanella baltica OS183] gi|307306020|ref|ZP_07585765.1| type III secretion exporter [Shewanella baltica BA175] gi|304348773|gb|EFM13193.1| type III secretion exporter [Shewanella baltica OS183] gi|306910893|gb|EFN41320.1| type III secretion exporter [Shewanella baltica BA175] Length = 348 Score = 201 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 72/361 (19%), Positives = 151/361 (41%), Gaps = 26/361 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPIS------REASLFSSILACLIYLLFFFSPG 54 MS N++ + K P+ KK+ + +G P + E +F+ I IY +F S Sbjct: 1 MS-NESTEPKKYPPTEKKLRELRKKGQFPKTELAEPTMELVVFAVIFIGTIYFVFDSSND 59 Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 + V + I L + + + L++ + S+++ Sbjct: 60 WFEVMLY----------------ADISTGLDIIYTVIAWGIFILLMIKLAMAAISWVMLN 103 Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174 V+N + +++S G K I+ I + ++ +++I + ++ + Sbjct: 104 KSVINTESLGLKMEKISPVTGAKNIFGIEAISRSLRKVLELIFLLFLLKYVFDIGGAELT 163 Query: 175 DFIS-ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 N +Y+ V V ++ ++ +L +D + + K +M+ E+K+E+ Sbjct: 164 RLAQINNVPYFIYNLMLYVGLVSLLFFVYGVSLGCVDFMAESYHFNHKNRMTFTEMKNEM 223 Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293 K++ G+P +K+ +K R + M + T I NPTH + + Y + + PV++ Sbjct: 224 KETEGSPEMKSERKRQMREVMDAPMTKG-RTPTFAIANPTHILVPICYDRMIDKVPVVLK 282 Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHK 352 A R+ NIPI E LAR+ +K + IP FY+ +A ++ ++ + Sbjct: 283 ITTESFALDERRRLEALNIPILEHIGLARAFYKSMRTGEDYIPKEFYRHIAFILLELNKQ 342 Query: 353 K 353 + Sbjct: 343 E 343 >gi|229138469|ref|ZP_04267058.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26] gi|228645006|gb|EEL01249.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26] Length = 259 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 124/263 (47%), Gaps = 14/263 (5%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N T++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236 Query: 246 QK---------SIARSRIRHKMM 259 +K + R + +++ Sbjct: 237 RKTLCTPYCKGQLRRRWMAQRLL 259 >gi|171319013|ref|ZP_02908140.1| type III secretion exporter [Burkholderia ambifaria MEX-5] gi|171095768|gb|EDT40721.1| type III secretion exporter [Burkholderia ambifaria MEX-5] Length = 250 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 109/248 (43%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K+E P+ ++ A EG SR+ + + + L F G + + +L Sbjct: 3 EKSEQPTDNRLRQARREGQISKSRDLTQALAGAMWPLALAGTFYLGFGTAVRVMQGVLDM 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + I F ++ + + L + L+ + I L+Q +L++ + P+ Sbjct: 63 IGEGAAREPTRIDFAVSRVIVPTITLSVGVALVGAVTAIAMELLQTKGLLSVKPIVPNLG 122 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +K I+S+ LV+ K+ VK+ +GT I + + + + +IL Sbjct: 123 KLNPISQLKNIFSLRTLVDLAKNLVKVTAIGTCTLIVIRLGLPDLAGLAAVDAPAILAVT 182 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + K+ + L +D+G+ +++ LKM+K E+K + KQ G+P+IK ++ Sbjct: 183 THLLFKIATASAGVLVVLAAIDVGYQKYEYIKGLKMTKDEVKRDYKQQEGDPLIKGERRR 242 Query: 249 IARSRIRH 256 + Sbjct: 243 LHAEMADR 250 >gi|260757056|ref|ZP_05869404.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str. 870] gi|260677164|gb|EEX63985.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str. 870] Length = 165 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 78/162 (48%), Positives = 119/162 (73%) Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 + ++L+ +L IA + D+ WS W +L+M++QE+KDE+KQS G+P++K+R +S+ R Sbjct: 1 MVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGR 60 Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311 R R +M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+ Sbjct: 61 DRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHS 120 Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IP+FE+ LAR+L+KQV ++ I P FYKAVA+LI I ++ Sbjct: 121 IPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 162 >gi|228900351|ref|ZP_04064580.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222] gi|228859238|gb|EEN03669.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222] Length = 259 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 119/246 (48%), Gaps = 5/246 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + +K + + EGN S++ + SIL + + FF + + + + VL Sbjct: 2 AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 + + + + ++ P L+L F + +Y+IQ + + +KP Sbjct: 62 FNQIGKN-----TDSTEYFYLMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 R++ + R++S +LV+ +KS + L+G + + +N ++ I N + L Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 ++ + + IL+ + L+++D + ++ +KM K+E+K E K + G+P +K + Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236 Query: 246 QKSIAR 251 +K++ Sbjct: 237 RKTLCM 242 >gi|330895854|gb|EGH28140.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica str. M301072PT] Length = 224 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%) Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 ++N + S +K I +G + + + T++ +++ + + R +L +IL + Sbjct: 1 MLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHALVELFRHILRVILGLLL 60 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA--- 261 + ++D + KL+MS ++IK E KQS G+P +K ++ +A+ + + A Sbjct: 61 AIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEILNQEPSAAPKP 120 Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321 A +++ NPTHYA+AL Y E P++ KG++ A + A + IP+ + L Sbjct: 121 VEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLT 180 Query: 322 RSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 R+L++ + IP +AV + + Sbjct: 181 RTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 210 >gi|270487694|ref|ZP_06204768.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM D27] gi|270336198|gb|EFA46975.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM D27] Length = 161 Score = 198 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 83/132 (62%) Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 +KM+KQE+K E K + GNP IK+R + + R ++ + A +IITNPTH+++AL+Y Sbjct: 1 MKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKY 60 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 + AP +VAKG++ IA +R IA +H I I E P LAR+++ +N IP Y+A Sbjct: 61 APEKASAPYIVAKGKDDIALYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRA 120 Query: 342 VAQLIYKIYHKK 353 +AQ++ + K Sbjct: 121 IAQVLTYVMQIK 132 >gi|14422432|dbj|BAB60839.1| epaS1 [Escherichia coli] Length = 243 Score = 198 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 8/243 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + ++ I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYVVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IAR 251 R Sbjct: 235 RIR 237 >gi|154175036|ref|YP_001408825.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus 525.92] gi|112803672|gb|EAU01016.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus 525.92] Length = 139 Score = 198 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 54/127 (42%), Positives = 89/127 (70%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSKQE+KDE KQ G+P +K R + + + +MM+ +A ++ITNPTHYA+A+RY + Sbjct: 1 MSKQEVKDEYKQMEGDPQVKGRIRRMQMQAAKRRMMQNVPQADVVITNPTHYAVAVRYDK 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 +++ APV++AKG +++A ++RKIA EH + I+E P LAR L++ + IP ++AVA Sbjct: 61 SKDSAPVILAKGVDMMALQIRKIALEHGVQIYENPPLARELYRVCEVEDTIPAELFRAVA 120 Query: 344 QLIYKIY 350 +++ +Y Sbjct: 121 EVLSFVY 127 >gi|157159225|ref|YP_001464194.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A] gi|209920314|ref|YP_002294398.1| putative type III secretion protein [Escherichia coli SE11] gi|256019342|ref|ZP_05433207.1| surface presentation of antigens protein SpaS [Shigella sp. D9] gi|293449182|ref|ZP_06663603.1| type III secretion protein SctU [Escherichia coli B088] gi|300815712|ref|ZP_07095936.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 107-1] gi|307310523|ref|ZP_07590171.1| type III secretion exporter [Escherichia coli W] gi|331678844|ref|ZP_08379518.1| type III secretion protein EprS [Escherichia coli H591] gi|332280456|ref|ZP_08392869.1| type III secretion protein EprS [Shigella sp. D9] gi|157081255|gb|ABV20963.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A] gi|209913573|dbj|BAG78647.1| putative type III secretion protein [Escherichia coli SE11] gi|291322272|gb|EFE61701.1| type III secretion protein SctU [Escherichia coli B088] gi|300531641|gb|EFK52703.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 107-1] gi|306909418|gb|EFN39913.1| type III secretion exporter [Escherichia coli W] gi|320202503|gb|EFW77073.1| surface presentation of antigens protein SpaS [Escherichia coli EC4100B] gi|323377251|gb|ADX49519.1| type III secretion exporter [Escherichia coli KO11] gi|324119899|gb|EGC13778.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1167] gi|331073674|gb|EGI44995.1| type III secretion protein EprS [Escherichia coli H591] gi|332102808|gb|EGJ06154.1| type III secretion protein EprS [Shigella sp. D9] Length = 243 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 8/243 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + F+K+ + I+ I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IAR 251 R Sbjct: 235 RIR 237 >gi|221271473|dbj|BAH15025.1| putative type III secretion system apparatus protein VscU2 [Vibrio parahaemolyticus] gi|328469635|gb|EGF40571.1| putative type III secretion system EscU protein [Vibrio parahaemolyticus 10329] Length = 346 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 64/356 (17%), Positives = 150/356 (42%), Gaps = 23/356 (6%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K P+ KK+ D +G P + A + I ++ ++S+ + Sbjct: 2 ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFVFCIIIVIT----LHSLFEYTNE 57 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++SA Q + +F + ++ ++ + +++ V++ + Sbjct: 58 WISSAIQSDINVGIDNMFSILGYTIGF------LAFFKIVMAVFEWVMINKSVISTEALG 111 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT------IITISLTENYFTMLDFIS 178 +++ G K I+ + + +S K++ + + L + + + + Sbjct: 112 FKIDKINPVNGAKNIFGVEAIS---RSSRKVLELLFLLFLLKYVFDVLGAELYKLNEINN 168 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 +Y+ +++ V + L++ + +D + ++ K +M+ E+K+E+K++ G Sbjct: 169 YP--YFIYYLLYSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNELKETEG 226 Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298 +P IK ++ R + + + + T + NPTH + + Y PV++ Sbjct: 227 SPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLKISTES 285 Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHKK 353 +A RK E IPI E LARSL++ + +P FY+ VA +I + +K Sbjct: 286 LALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQK 341 >gi|213021563|ref|ZP_03336010.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 243 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 102/244 (41%), Gaps = 3/244 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ + + ++ F + +LD + Y++ LKMSK ++K E K G+P +K R++ Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239 Query: 249 IARS 252 + Sbjct: 240 MQSE 243 >gi|260899851|ref|ZP_05908246.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037] gi|308107387|gb|EFO44927.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037] Length = 346 Score = 196 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 63/355 (17%), Positives = 145/355 (40%), Gaps = 21/355 (5%) Query: 5 DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64 ++ + K P+ KK+ D +G P + A + I ++ + + Sbjct: 2 ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFVFCIIIVITLHSLLEYTNEWISS 61 Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + S ++++ I+ ++ + +++ V++ + Sbjct: 62 AIQSDINVGIDNMFSILGYTIGF----------LAFFKIVMAVFEWVMINKSVISTEDLG 111 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI-----ITISLTENYFTMLDFISA 179 +++ G K I+ + + +S K++ + + + L+ I+ Sbjct: 112 FKIDKINPVNGAKNIFGVEAIS---RSSRKVLELLFLLFLLKYVFDVLGAKLYKLNEINN 168 Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239 P+ +Y+ ++ V + L++ + +D + ++ K +M+ E+K+E+K++ G+ Sbjct: 169 YPY-FIYYLLNSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNELKETEGS 227 Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299 P IK ++ R + + + + T + NPTH + + Y PV++ + Sbjct: 228 PEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLKISTESL 286 Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHKK 353 A RK E IPI E LARSL++ + +P FY+ VA +I + +K Sbjct: 287 ALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQK 341 >gi|255030633|ref|ZP_05302584.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28] Length = 197 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 103/186 (55%) Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220 + I ++ T++ + N L F + + + L IA + +LD + + + Sbjct: 1 MAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKK 60 Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280 L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ +R Sbjct: 61 GLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMR 120 Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y +T++ AP L+ KG++ +A +R++A +P+ LARS++ + I YK Sbjct: 121 YDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYK 180 Query: 341 AVAQLI 346 V +++ Sbjct: 181 DVIEVM 186 >gi|226327763|ref|ZP_03803281.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198] gi|225203467|gb|EEG85821.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198] Length = 139 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M++QEIKDE KQ G+P +K R + + R +MM A +I+TNPTHYA+AL+Y Sbjct: 1 MTRQEIKDEFKQQEGDPQLKARIRQQQHAMSRRRMMADVPNADVIVTNPTHYAVALQYN- 59 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 + AP ++AKG IA K+++I E+ IP+ E P LAR+L++ I AIP Y AVA Sbjct: 60 DKMTAPKVLAKGAGAIALKIKEIGAENRIPLLEAPPLARALYRHSEIGHAIPSTLYAAVA 119 Query: 344 QLIYKIYHKK 353 +++ +Y K Sbjct: 120 EVLAWVYQLK 129 >gi|256024634|ref|ZP_05438499.1| surface presentation of antigens protein SpaS [Escherichia sp. 4_1_40B] gi|300950611|ref|ZP_07164513.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 116-1] gi|300958192|ref|ZP_07170346.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 175-1] gi|300315144|gb|EFJ64928.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 175-1] gi|300450091|gb|EFK13711.1| putative surface presentation of antigens protein SpaS [Escherichia coli MS 116-1] gi|309703219|emb|CBJ02554.1| type III secretion system protein [Escherichia coli ETEC H10407] gi|323935780|gb|EGB32083.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1520] Length = 243 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 8/243 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + +K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IAR 251 R Sbjct: 235 RIR 237 >gi|301643802|ref|ZP_07243839.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 146-1] gi|301077835|gb|EFK92641.1| surface presentation of antigens protein SpaS family protein [Escherichia coli MS 146-1] Length = 243 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 8/243 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLVTEAVKFKLD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ G+KRI+ + + +K+ + II I + + + + + + S+L Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSGW 174 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 Query: 249 IAR 251 R Sbjct: 235 RIR 237 >gi|153846242|ref|ZP_01993844.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] gi|149744950|gb|EDM56290.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus AQ3810] Length = 150 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 49/125 (39%), Positives = 79/125 (63%) Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288 +KDE K++ G P +K R + + R + +MM +A +I+TNP HY++ALRY Q + A Sbjct: 1 VKDEYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRA 60 Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 PV++AKG + +A K+R++A EH+I I P LAR+L+ + IP + AVAQ++ Sbjct: 61 PVVIAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAF 120 Query: 349 IYHKK 353 ++ K Sbjct: 121 VFQLK 125 >gi|116515090|ref|YP_802719.1| hypothetical protein BCc_150 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256944|gb|ABJ90626.1| type III protein export, membrane component [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 371 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 156/348 (44%), Gaps = 1/348 (0%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 + +NKTE + KI+ G S + + F + + I+ L +L Sbjct: 5 SQENKTEEATPNKIKKFKKNGIFQSSHDLNSFFIL-LFFFSFFYINKKFIFFYFLKLFIL 63 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 S + + + I S ++ + + + Sbjct: 64 SFSFQTNIINQPHFFFDSFFQNIKFLLIFFLILFIGIFFILIISPVLIYKEITKIKFLNF 123 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 + +++ +K+ + ++ F SF KIILV + I + YF F S + S + Sbjct: 124 NLNFLNILNNVKKKSLFDLIIEFFFSFFKIILVFFVSFIFVKTMYFKKKYFYSYSFFSNI 183 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245 + + V + + ++L+ + ++D Y + ++ LKM+ QEIKDE K+ GNPIIK R Sbjct: 184 FLGYKFVYRFISLLLMIFLIIAIIDSSIKYFKHFNNLKMTIQEIKDEQKELDGNPIIKQR 243 Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 + + + +R + ++ +II + ++A+A++Y N P++ AKG +A ++ K Sbjct: 244 IRFLMKQTLRKSVFSQVIKSNVIIYDSVNFAVAIQYNIHLNSTPIISAKGSGKVALRIIK 303 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IA E+NIPIF S+A+ L+ I + I + ++A+++ + K Sbjct: 304 IAEENNIPIFFSNSIAKYLYNNFFIGNNISVNLHYSIAKILAWAWKLK 351 >gi|255019035|ref|ZP_05291161.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL F2-515] Length = 193 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 58/193 (30%), Positives = 112/193 (58%) Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 +++P +++ ++FG+ +Y +Q + + VKP FKR++ KR++S+ +V +K+ + Sbjct: 1 MLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALL 60 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 I L+ + I ++ T++ + N L F + + + L IA + +LD + Sbjct: 61 LITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFY 120 Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273 + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPT Sbjct: 121 QRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPT 180 Query: 274 HYALALRYIQTEN 286 H ++ +RY +T++ Sbjct: 181 HISVVMRYDKTKD 193 >gi|323166469|gb|EFZ52233.1| surface presentation of antigens protein spaS [Shigella sonnei 53G] Length = 250 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 104/245 (42%) Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166 + L+Q VL +K F ++ +G+K+I+SI + F KS + +I++ Sbjct: 1 MLPTLVQTKFVLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFW 60 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 + + + ++ + + +++ L F + +LD + + + M K Sbjct: 61 INDRKIIFSQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDK 120 Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QEIK E + G+ K+R++ + + + + +++ NPTH A+ + + Sbjct: 121 QEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIA 180 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP + N A +RK A E IP + LAR L+K S + V +LI Sbjct: 181 PAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLI 240 Query: 347 YKIYH 351 + Sbjct: 241 VWLEQ 245 >gi|190894062|ref|YP_001984356.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] gi|190699723|gb|ACE93806.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] Length = 265 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 110/263 (41%), Gaps = 1/263 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ND + KT PS K++ EG P S+E + S+LA +Y+ + + T Sbjct: 1 MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPAILEDFTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L SA + L D + T ++L + +P + S L + ++ Sbjct: 61 SFDSGLQSAGRADLSDAVTVGLSETGVAL-LDLIWLPLATGLAATILVSILDGQGFPVSF 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 H+ F R++ EGIKR++S+ ++ F+K VK +L+ T ++ ++ Sbjct: 120 KHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAILYFLNSIFWSPLCG 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + +L++ + DI S + + +M+K E + E K + G+P Sbjct: 180 EACTLSATAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEARREYKDTQGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEATS 263 +K+ ++ I Sbjct: 240 KLKSARRQIGAEMRSSPPRRQGP 262 >gi|21492901|ref|NP_659976.1| type III secretion system translocation protein [Rhizobium etli CFN 42] gi|21467326|gb|AAM54989.1| type III secretion system translocation protein [Rhizobium etli CFN 42] Length = 265 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 111/261 (42%), Gaps = 1/261 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M++ND + KT PS K++ EG P S+E + S+LA +Y+ + + T Sbjct: 1 MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPDILEDFTR 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L SA + + D + T ++L + +P + + S L + ++ Sbjct: 61 SFDAGLQSAARADVSDAVTVGLSETGVAL-LDLIWLPLAMGLAATILVSILDGQGFPVSF 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 H+ F R++ EGIKR++S+ ++ F+K VK +L+ T ++ ++ Sbjct: 120 KHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAILYFLNSIFWSPLCG 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 L + +L++ + DI S + + +M+K E + E K + G+P Sbjct: 180 EACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEARREYKDTQGDP 239 Query: 241 IIKNRQKSIARSRIRHKMMEA 261 +K+ ++ I Sbjct: 240 KLKSARRQIGAEMRSSPPRRQ 260 >gi|207109438|ref|ZP_03243600.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPKX_438_CA4C1] Length = 157 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 96/146 (65%), Gaps = 1/146 (0%) Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 +D+ Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A + Sbjct: 1 FIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANV 60 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 ++TNPTHYA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E +LAR L+++ Sbjct: 61 VVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRE 119 Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353 V +N+AIP ++AVA + ++ + Sbjct: 120 VKLNAAIPEELFEAVAIVFAQVAKLE 145 >gi|284007676|emb|CBA73401.1| surface presentation of antigens protein SpaS,YscU,EscU,HrcU,SsaU [Arsenophonus nasoniae] Length = 275 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 116/257 (45%) Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157 + + + I LIQ +L +K FK++ + +GIKR+ L N K+ + + + Sbjct: 1 MIFISALAAIIPSLIQSKFILATEAIKLDFKKLDIVQGIKRLVDKRALKNLFKALLFLAI 60 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 + + T+L I+Y K ++ LLF + LD Y Sbjct: 61 FISSCYFFIQSYQSTLLFTQRKTIWHIIYDWRILTLKFVLFFLLFSLPILFLDALCEYFL 120 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277 +S++KM K E+K E K++ GNP IK+ ++ + + + +A +++++I+ NPTH A+ Sbjct: 121 HHSEMKMEKHEVKREYKENEGNPEIKSARRGAHQELLNAETKQAIAQSSMILANPTHIAI 180 Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 + + + P++ + N A ++ A + IPI LAR ++ + + + Sbjct: 181 GIYFDPDNSILPLVAVRMANQYALAVQAYAKQIGIPIVRNIKLARQIYHRYRLYETVVKQ 240 Query: 338 FYKAVAQLIYKIYHKKI 354 V + + ++ Sbjct: 241 DLLDVIDIFIWLKQVEM 257 >gi|217032176|ref|ZP_03437675.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128] gi|216946166|gb|EEC24775.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128] Length = 153 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 56/139 (40%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274 Q+ + LKM+KQE+KDE KQ GNP IK + + + +KMM+ +A +++TNPTH Sbjct: 4 RRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTH 63 Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 YA+AL++ E+ PV+VAKG + +A +++ IA EH+I I E +LAR L++ V +N+ I Sbjct: 64 YAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATI 122 Query: 335 PPVFYKAVAQLIYKIYHKK 353 P ++AVA + ++ + Sbjct: 123 PEELFEAVAIVFAQVAKLE 141 >gi|315301911|ref|ZP_07872923.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596] gi|313629719|gb|EFR97840.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596] Length = 162 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 91/151 (60%) Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255 + + L IA + +LD + + + L+MSKQEIKDE+K S G P +K RQ+SIAR ++ Sbjct: 1 FLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQ 60 Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315 + + + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A +R++A +P+ Sbjct: 61 GSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDEVPMI 120 Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 LARS++ + I YK V +++ Sbjct: 121 TNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 151 >gi|171323057|ref|ZP_02911702.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] gi|171091551|gb|EDT37164.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5] Length = 216 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 106/211 (50%), Gaps = 2/211 (0%) Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 + +++ ++ VK+ + T+ + + + + +L+ Sbjct: 1 MQTVLDAARACVKLGVYCTLAYRCIADAVRAASH-AGLTAAGLARTLGSASFALATQLLI 59 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-KMME 260 A TV D ++ +++MS+ E+K E KQ G+P IK R++ + R ++ + + Sbjct: 60 AAALFTVFDYALVRRRFAKQMRMSRHEVKQEFKQHDGDPRIKQRRRQLQRGLLQRSRSLR 119 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 A +++TNPTHYA+ LRY E AP +V+KG A ++RK+A+ H + I E P+L Sbjct: 120 GMRGADVLVTNPTHYAIGLRYTPAEMAAPTIVSKGAGEFALRLRKLAFIHRVQIVEAPAL 179 Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 AR LF+ +++ IPP + A A + ++ Sbjct: 180 ARQLFRHGALDTEIPPQLFVATAAIYLRVRR 210 >gi|218673114|ref|ZP_03522783.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56] Length = 137 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 72/127 (56%), Positives = 104/127 (81%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 M++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+ RAT++I NPTHYA+ALRY + Sbjct: 1 MTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAR 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA Sbjct: 61 EENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVA 120 Query: 344 QLIYKIY 350 +LI+++Y Sbjct: 121 ELIHRVY 127 >gi|197121152|ref|YP_002133103.1| type III secretion exporter [Anaeromyxobacter sp. K] gi|196171001|gb|ACG71974.1| type III secretion exporter [Anaeromyxobacter sp. K] Length = 343 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 149/347 (42%), Gaps = 8/347 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 N+TE P+ +++ +A G +SRE + +++ L L T++L +L Sbjct: 2 SGNRTEQPTPRRLREARRRGEVAVSRELTGAAALAGGLAALAVSAPGA----TAELGAML 57 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 +A + + L + + RL +P + G G+ +Q P L+L + P Sbjct: 58 RAALAAANGEPAGPAAALQGAAAAVLRLSLPACGAALAAGAGAAALQAGPGLSLAALAPR 117 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +R+ G++R+ S L K ++ + L ++ P + L+ Sbjct: 118 LERLDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALPRLGP-AALW 176 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A + + + A L LD+ + L M++ E++ E ++ G+P+ + + Sbjct: 177 RAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDEGDPLHRAER 236 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R+ + + + NPTH A+AL + + AP +VAKG A ++R Sbjct: 237 QRRHRALLEAPAVARATVVV---VNPTHLAVALHHDRRGGGAPRVVAKGAGEAAARIRSA 293 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +P+ + +LAR+L + + IP Y+A A ++ +Y + Sbjct: 294 ARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLYGLE 340 >gi|330975860|gb|EGH75926.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 175 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 4/162 (2%) Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ +A+ Sbjct: 1 HILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEI 60 Query: 254 IRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310 + + A A +++ NPTHYA+AL Y E P++ KG++ A + A + Sbjct: 61 LNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKA 120 Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 IP+ + L R+L++ + IP +AV + + Sbjct: 121 GIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 161 >gi|254439657|ref|ZP_05053151.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307] gi|198255103|gb|EDY79417.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307] Length = 176 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 5/150 (3%) Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA-----RSRIRHKMMEAT 262 + D+ W +Q + KM+ QE+KDE K++ G+P +K + + + R++ R M+ Sbjct: 1 MFDVVWQQYQHNQEQKMTLQEVKDESKETEGSPELKAKIRRLQMTAGKRAKERRAAMDKV 60 Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322 +T IITNPTH+A+AL+Y AP ++A G+ A ++ +I E + +F LAR Sbjct: 61 PTSTAIITNPTHFAVALKYEVGTPGAPEILAMGRGHQAHEIIRIGTESGVTVFRNELLAR 120 Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 +LF I IP Y AVA ++ IY Sbjct: 121 ALFFAGNIGEEIPSPLYTAVASVLAFIYQL 150 >gi|226327764|ref|ZP_03803282.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198] gi|225203468|gb|EEG85822.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198] Length = 227 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 2/221 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ KTE P+ K E A +G S+E S IL + L + + Sbjct: 1 MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKELSSVLMILGGVSLLWMSGGFITRELYA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L + + + + ++ L A + P L + IG + + Sbjct: 60 MLTEGF-TFNHHLIGNENLLIPRFGSLIKQAVFALSPVFLGLVFVAIGGSALLGGINFSS 118 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +K K+ + G+KRI+S+N L K+ +K VG T+ L N+ +L I+ Sbjct: 119 KSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSTFVGIAATVFLWHNWNDILHLITLP 178 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 P S L +A + + + + + + DI + K Sbjct: 179 PLSALANAMQLLIFAVYITVFMLIPMVAFDIIFQIRSHLKK 219 >gi|222082192|ref|YP_002541557.1| type III secretion system translocation protein [Agrobacterium radiobacter K84] gi|221726871|gb|ACM29960.1| type III secretion system translocation protein [Agrobacterium radiobacter K84] Length = 268 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 108/266 (40%), Gaps = 3/266 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS+ND + K+ PS K++ EG S+E + S+LA YL + + Sbjct: 1 MSKNDDTEEKSLPPSRVKLDRLRREGQVARSKEIPVAISVLAIAAYLAWALGDILRDFAR 60 Query: 61 DLHVLLASA--TQRKLEDISHIVFLLTHLS-LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 V +A T D + +T+++ + L +P LL + S L + Sbjct: 61 IFGVGFEAAGLTGSPQADPGFPLTAVTNMAEILFGILWVPMLLGLAITIAVSILDGQGFP 120 Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ H+ R++ GI +++S+ NLV F+K VK+IL+ ++ + Sbjct: 121 VSTKHMNFDLNRLNPASGIMKLFSVTNLVEFLKGIVKVILLSVAGGGAVLYFLNGIFWAP 180 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 L A + ++++ + D+ S + + +M+K E + E K + Sbjct: 181 LCGEACSLSVAAHLIGTIVVVAAAIMLAAAFFDLSISRLLFRREHRMTKTEARREHKDTQ 240 Query: 238 GNPIIKNRQKSIARSRIRHKMMEATS 263 G+P +K+ ++ + Sbjct: 241 GDPHLKSARRRVGAEMRNAPPRREKP 266 >gi|86157128|ref|YP_463913.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] gi|85773639|gb|ABC80476.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C] Length = 343 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 149/346 (43%), Gaps = 8/346 (2%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 N+TE P+ +++ +A G +SRE + ++ L L + ++L +L Sbjct: 3 GNRTEQPTPRRLREARRRGEVAVSRELTGAAA----LAGGLAALAASAPGAAAELGAMLR 58 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 +A L + + RL +P ++ G + +Q P L+L + P Sbjct: 59 AALAAAGGAPGSPAAALQGAASAVLRLSLPACGGALLAGAAAAALQAGPGLSLAALAPRL 118 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +R+ G++R+ S + L VK ++ + L ++ P + L+ Sbjct: 119 ERLDPARGLRRLLSTSQLAAAALGLVKAAVLAALACGWLAGAAPSLAALPRLGP-AALWR 177 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + + + A L LD+ + L M++ E++ E ++ G+P+ + ++ Sbjct: 178 SPAVLGGLTWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDEGDPLHRAERQ 237 Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 R+ + + + NPTH A+AL + + + AP +VAKG A ++R A Sbjct: 238 RRHRALLEAPAVARATVVV---VNPTHLAVALHHDRRDGGAPRVVAKGAGDAAARIRSAA 294 Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 +P+ + +LAR+L + + IP Y+A A ++ +Y + Sbjct: 295 RRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLYGLE 340 >gi|211939072|pdb|2W0R|A Chain A, Crystal Structure Of The Mutated N263d Yscu C-Terminal Domain Length = 144 Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 75/136 (55%) Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 +LKMSK EIK E K+ G+P IK++++ + M E R+++++ +PTH A+ Sbjct: 1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVADPTHIAIG 60 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 + Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120 Query: 339 YKAVAQLIYKIYHKKI 354 +A A+++ + + I Sbjct: 121 IEATAEVLRWLERQNI 136 >gi|222446917|pdb|2JLH|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia Pestis Yscu N263a Mutant Length = 144 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 74/136 (54%) Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 +LKMSK EIK E K+ G+P IK++++ + M E R+++++ PTH A+ Sbjct: 1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAPTHIAIG 60 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 + Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120 Query: 339 YKAVAQLIYKIYHKKI 354 +A A+++ + + I Sbjct: 121 IEATAEVLRWLERQNI 136 >gi|167841195|ref|ZP_02467879.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 250 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 102/248 (41%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ ++ G SR+ + + A + F + LH L Sbjct: 3 EKTEQPTESRLRRERRAGRISKSRDLTQAVAGAAWPLAFALSFDFVFGAAVRVLHGLFEL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + D + + F ++ + + L + I L+Q +L++ V P+F Sbjct: 63 IGEGGPPDSARMDFAMSRVIVPTIALSVGVAAAGAAISIALELMQTKGLLSMKPVTPNFG 122 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ +K I+S+ LV K+ VK+ VG + + + + + S L Sbjct: 123 KLNPINQLKSIFSLRTLVELAKNLVKVAAVGACTLVVIRVALPDLAVVATVDLPSALNLT 182 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + ++ + + L V+D+G+ +++ LKM+K E+K + KQ G+P++K ++ Sbjct: 183 TSLLFRIATASIAVLVALAVIDVGYQRYEYIKGLKMTKDEVKRDYKQQEGDPLVKGERRR 242 Query: 249 IARSRIRH 256 Sbjct: 243 QHAELADR 250 >gi|289805082|ref|ZP_06535711.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 224 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 3/224 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + ++ + L SA + G ++ +GS +Q V+ + + Sbjct: 63 VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 ++ K+I+S++++V KS +K+I++ I T + Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232 ++ + + ++ F + +LD + Y++ LKMSK ++K E Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQE 223 >gi|238759386|ref|ZP_04620551.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236] gi|238702413|gb|EEP94965.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236] Length = 240 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 90/206 (43%) Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 MK+F+ +++ G + + + ++ +I+ L + + Sbjct: 1 MKAFLYLLVFGASAALFFIFWRQEIFMLYRTTINGMIGQWGHLCITFIIVFLAVALLILL 60 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268 +D + + LKM KQE+K E K + G+P IK+ ++ + + + ++ +T I Sbjct: 61 IDTLTEFFLFMKDLKMEKQEVKKEHKDNDGDPHIKSARRGLHQELLSEEVKANVRDSTFI 120 Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + NPTH A+A+ + P ++ K + L AK + A +P+ + LAR L++ Sbjct: 121 MANPTHIAMAIYFNTDIAPLPFIMMKTKGLQAKAVVAYAESQGVPVVRDIPLARQLWRHY 180 Query: 329 PINSAIPPVFYKAVAQLIYKIYHKKI 354 +S I V +I + ++ Sbjct: 181 RKDSFIDEQGLDDVMHVINWLIRVEL 206 >gi|211938988|pdb|2V5G|A Chain A, Crystal Structure Of The Mutated N263a Yscu C-Terminal Domain Length = 144 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 72/136 (52%) Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 +LK SK EIK E K+ G+P IK++++ + E R+++++ PTH A+ Sbjct: 1 IKELKXSKDEIKREYKEXEGSPEIKSKRRQFHQEIQSGNXRENVKRSSVVVAAPTHIAIG 60 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 + Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120 Query: 339 YKAVAQLIYKIYHKKI 354 +A A+++ + + I Sbjct: 121 IEATAEVLRWLERQNI 136 >gi|222446919|pdb|2JLJ|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia Pestis Yscu N263a P264a Mutant Length = 144 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 73/136 (53%) Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278 +LKMSK EIK E K+ G+P IK++++ + M E R+++++ TH A+ Sbjct: 1 IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIG 60 Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 + Y + E P++ K + + +RKIA E +PI + LAR+L+ ++ IP Sbjct: 61 ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120 Query: 339 YKAVAQLIYKIYHKKI 354 +A A+++ + + I Sbjct: 121 IEATAEVLRWLERQNI 136 >gi|220915853|ref|YP_002491157.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] gi|219953707|gb|ACL64091.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1] Length = 343 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 145/347 (41%), Gaps = 8/347 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 N+TE P+ +++ +A G +SRE + A L L + ++L +L Sbjct: 2 SGNRTEQPTPRRLREARRRGEVAVSRELTGA----AALAGGLAALAASAPGAAAELGAML 57 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 +A + L + + RL +P + G + +Q P L+ + P Sbjct: 58 RAALAAAGGAPASPAAALQGAAAAVLRLSLPACGAALAVGAAAAALQAGPGLSFAALAPR 117 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 +R+ G++R+ S L K ++ + L ++ P + L+ Sbjct: 118 LERIDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALPRLGP-AALW 176 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 A + + + A L LD+ + L M++ E++ E ++ G+P+ + + Sbjct: 177 RAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDEGDPLHRAAR 236 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 + R+ + + + NPTH A+AL++ + AP +VAKG A ++R Sbjct: 237 QRRHRALLEAPAVARATVVV---VNPTHLAVALQHDRRGGGAPRVVAKGAGEAAARIRSA 293 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 A +P+ + +LAR+L + + IP Y+A A ++ +Y + Sbjct: 294 ARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLYGLE 340 >gi|296162493|ref|ZP_06845284.1| type III secretion exporter [Burkholderia sp. Ch1-1] gi|295887306|gb|EFG67133.1| type III secretion exporter [Burkholderia sp. Ch1-1] Length = 246 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 110/245 (44%), Gaps = 3/245 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NK+EAP+ K+I A +G S ++ S L +YL F +P +Y++ ++L + + + Sbjct: 3 NKSEAPTPKRIRRARRDGEISKSTHLTVAFSGLCWWLYL-FIEAPHLYALGNELILRVTT 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + + + V+ L + + + L+Q +L V P K Sbjct: 62 LDGSR--EFGDRLASTCAALYAFMSPVLAALGVGALAVLVPELMQTRGLLAWKRVMPDVK 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ G+K+++S+ + + + + ++ ++ + +L + + + L +A Sbjct: 120 RLNPVNGLKQMFSLRLVWDTVLTIIQFTILLFLFVQALVAWLRQLAPIWTFSLPVHLGYA 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 + +L+ + + V D W L+M K EIK E + G+P +K+R+++ Sbjct: 180 AVSHSHLLLWMTVSQIAPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRA 239 Query: 249 IARSR 253 + R Sbjct: 240 LHREL 244 >gi|185177891|pdb|3BZR|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d Mutation, Space Group P 41 21 2 gi|185177892|pdb|3BZS|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d Mutation, Space Group P 21 21 21 Length = 137 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 70/123 (56%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSK E+K E K + GNP IK ++ + + ++T+I+ +PTH A+ L Y Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKL 66 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126 Query: 344 QLI 346 QLI Sbjct: 127 QLI 129 >gi|330874619|gb|EGH08768.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] Length = 234 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 99/235 (42%), Gaps = 3/235 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ ++ L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S N++N + S +K + +G + + + ++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVK 234 >gi|218507112|ref|ZP_03504990.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5] Length = 218 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 95/167 (56%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP++KK DA +GN P SRE S+F+++LA IYL+FF + ++ L Sbjct: 17 DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATVLATFIYLVFFLPENVGRMSETLR 76 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 77 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 +P R+S +G R++S+ L+ F KS +++VG I+ L N Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFNVVVVGVILFFVLRANI 183 >gi|185177890|pdb|3BZP|A Chain A, Crystal Structural Of The Mutated N262a Escu C-Terminal Domain Length = 137 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 69/123 (56%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSK E+K E K + GNP IK ++ + + ++T+I+ PTH A+ L Y Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKAPTHIAICLYYKL 66 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126 Query: 344 QLI 346 QLI Sbjct: 127 QLI 129 >gi|110632475|ref|YP_672683.1| type III secretion exporter [Mesorhizobium sp. BNC1] gi|110283459|gb|ABG61518.1| type III secretion exporter [Chelativorans sp. BNC1] Length = 339 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 122/330 (36%), Gaps = 8/330 (2%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66 KTEAP+ +++E+ EG P + + + ++ L++ F P ++ + + Sbjct: 2 SGEKTEAPTPRRLEERRREGQVPQRKNIIEAALLTFVVVLLIWLFRPLSEALLNLSAAVF 61 Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 +S + D+ ++ ++ +F + + + + P Sbjct: 62 SSISH----DLEAATATSLVAAMPVVHWMLAICGASALFTLLLSCVLNKFMFAPKALAPK 117 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 F+R + IK I+S L +FM+ V V I N L + Sbjct: 118 FERFNPVGQIKSIFSKATLYSFMRMIVLFTAVSAIFIYLYVANMDNSLQASHCGEACLYD 177 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246 + ++ +L + L ++D + S+ KM+K+E+K E K G+ IK + Sbjct: 178 LFTSRIGMLVAAVLGVLIVLALIDYKIQDRMFISQNKMTKEEVKREYKDQEGDREIKAGR 237 Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306 KSIA + ++ ++ + + A+ + P LV K + + Sbjct: 238 KSIALNDAAAPLLSESTH----VVHSDQVLAAVIFYPGAGYPPYLVFKAMGASVPGLCRK 293 Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 NIP F P A ++ +P Sbjct: 294 FLAMNIPTFNVPGAALEFYRMSAPGQYLPA 323 >gi|91782705|ref|YP_557911.1| putative type III secretion transmembrane protein, EscU/SctU/YscU-like [Burkholderia xenovorans LB400] gi|91686659|gb|ABE29859.1| Putative type III secretion transmembrane protein, EscU/SctU/YscU-like protein [Burkholderia xenovorans LB400] Length = 246 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 106/245 (43%), Gaps = 3/245 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +K+EAP+ ++I A +G S ++ S L +YL F +P +Y++ S L + + + Sbjct: 3 DKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYL-FIEAPHLYALGSQLILHVTT 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + D + + V+ L + ++ + L+Q VL V P K Sbjct: 62 LDASR--DFGDQLASTCAALYAFMAPVLTALGVGVLAVLVPELMQTRGVLAWKRVAPDVK 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ G+K+++S+ L + + + ++ ++ + T ++ + + L + Sbjct: 120 RLNPINGLKQMFSLRLLWDSVLTIIQFTILLFLFTQAVVAWLRQLAPAWEFSLPVHLGYT 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 +L + V D W L+M K EIK E + G+P +K+R+++ Sbjct: 180 AIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRA 239 Query: 249 IARSR 253 + R Sbjct: 240 LHREL 244 >gi|330879005|gb|EGH13154.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 279 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 113/246 (45%), Gaps = 1/246 (0%) Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 LL H + +P + + + I + ++ R V ++ ++P KR++ EG KRI++ Sbjct: 31 LLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVFSIEPIQPDIKRINPTEGFKRIFA 90 Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 + NL+ F+K VK++L+ + + +++ I + ++ ++ +L Sbjct: 91 MRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSRCGEGCIESTFYLVLKPLVFTVLA 150 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261 + +D+ + ++KMS E K E K G+P+IK ++ R Sbjct: 151 AFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLG 210 Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321 RA+++I + + + +RY++ E P++V + + + + A I + + SLA Sbjct: 211 LGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLA 270 Query: 322 RSLFKQ 327 + ++ Sbjct: 271 EMIARR 276 >gi|307944387|ref|ZP_07659728.1| putative secretion system apparatus protein SsaU [Roseibium sp. TrichSKD4] gi|307772733|gb|EFO31953.1| putative secretion system apparatus protein SsaU [Roseibium sp. TrichSKD4] Length = 259 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 9/265 (3%) Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 +S +V+P ++L + F + + ++ V + +KP F +++ G+K I+ + L Sbjct: 1 MSDGYIVLPIMMLVIFFSVLASIMMTQGFVFSTERMKPDFNKLNPANGLKNIFGLQALKT 60 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 + +++ GTI+ + T+ + VL+ +L+ Sbjct: 61 ALMHVLRLSFSGTILIFLIYYFVPTVFLSPYCELDCGISVNATVYFYVLLALLILSIIFA 120 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267 ++D ++ + KM+ E K E K+ GNP IK R K I + + + A+ Sbjct: 121 MIDFVVQRSEFLRQNKMTDTEQKQEKKEQLGNPEIKGRIKEIQQEVVTKTV--GMRNASF 178 Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 I+ + A+A+RY+ + P +VAK + A + ++A E P+ L +L K+ Sbjct: 179 IVADGLKQAVAIRYVPGGEEMPTIVAKARGRNA--VLRLASESGKPVEHSAEL-LALVKK 235 Query: 328 VPINSAIPPVFYKAVAQLIYKIYHK 352 + + I +A + + HK Sbjct: 236 IGVGDPI---MDEAAVKHLVPFLHK 257 >gi|185177893|pdb|3BZT|A Chain A, Crystal Structural Of The Mutated P263a Escu C-Terminal Domain gi|313507295|pdb|3C03|A Chain A, Crystal Structure Of The Escu C-Terminal Domain With P263a Mutation,Space Group P 1 21 1 Length = 137 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 69/123 (56%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSK E+K E K + GNP IK ++ + + ++T+I+ N TH A+ L Y Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNATHIAICLYYKL 66 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + I F++ VA Sbjct: 67 GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126 Query: 344 QLI 346 QLI Sbjct: 127 QLI 129 >gi|148645118|gb|ABR01083.1| FlhB [uncultured Geobacter sp.] gi|148645120|gb|ABR01084.1| FlhB [uncultured Geobacter sp.] Length = 114 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 70/113 (61%) Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE K G+P +K++ K + + ++ + A +IITNPTH+A+AL+Y + Sbjct: 1 QEVKDEHKDMEGDPQVKSKIKGLQFQKAFQRLQKIIPTADVIITNPTHFAVALKYDRDRM 60 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339 APV++AKG + +A++++ +A E+NI + E LAR L+ QV IP Y Sbjct: 61 AAPVVIAKGADFMAQRIKALARENNITLVENRFLARELYAQVKEGEEIPEALY 113 >gi|218678319|ref|ZP_03526216.1| flagellar biosynthesis protein FlhB [Rhizobium etli CIAT 894] Length = 169 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 100/169 (59%) Query: 12 EAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 EAP++KK DA +GN P SRE S+F++ILA IYL+FF G+ +T L + Q Sbjct: 1 EAPTAKKQSDAAEKGNLPSSRELSIFATILATYIYLVFFLPEGVGRMTETLRDIFEQPDQ 60 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131 K+E I+ L L +++ LV P L++FM+FGI S + Q +P L ++P R+S Sbjct: 61 WKIETGPDILSLFVRLGWASAALVAPALIMFMVFGIASSVFQNLPTPVLERIRPQASRIS 120 Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 +G R++S+ L+ F KS K+++VG I+ L YF+ +D + ++ Sbjct: 121 PAKGWGRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSD 169 >gi|222446918|pdb|2JLI|A Chain A, Atomic Resolution Structure Of The Cytoplasmic Domain Of Yersinia Pestis Yscu, A Regulatory Switch Involved In Type Iii Secretion Length = 123 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%) Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 EIK E K+ G+P IK++++ + M E R+++++ NPTH A+ + Y + E Sbjct: 1 EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP 60 Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347 P++ K + + +RKIA E +PI + LAR+L+ ++ IP +A A+++ Sbjct: 61 LPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLR 120 Query: 348 KI 349 + Sbjct: 121 WL 122 >gi|313639087|gb|EFS04065.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL S4-171] Length = 134 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 77/123 (62%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MSKQEIKDE+K S G P +K RQ+SIAR ++ + + + AT ++ NPTH ++ +RY + Sbjct: 1 MSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDK 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 ++ AP L+AKG++ +A +R++A +P+ LARS++ + I YK V Sbjct: 61 AKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI 120 Query: 344 QLI 346 +++ Sbjct: 121 EVM 123 >gi|254460321|ref|ZP_05073737.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium HTCC2083] gi|206676910|gb|EDZ41397.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium HTCC2083] Length = 137 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 78/130 (60%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283 MS +E++DE K+S G P +K +++ A+ ++MM A ++I NPTHYA+AL++ Sbjct: 1 MSHKELQDESKESEGAPHLKQARRARAQEVAMNQMMGEFPTADVVIVNPTHYAIALKWEG 60 Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343 + + AP+ VAKG + IA ++++ A + + I +P AR+++ V I I P +Y+AVA Sbjct: 61 SRSAAPICVAKGVDDIAMRIKEAAKDAKVAIHSDPPTARAIYAVVEIGQEINPEYYEAVA 120 Query: 344 QLIYKIYHKK 353 I K Sbjct: 121 VAIRFAEALK 130 >gi|213423874|ref|ZP_03356854.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 228 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 81/186 (43%) Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 + + + +K+ + + I + + ++ N I + +++ L Sbjct: 1 MRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAVIWRELLLALVLTCLA 60 Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261 + +LD Y +KM K+E+K E+K+ GNP +K++++ + + ++ Sbjct: 61 CALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSD 120 Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321 + +I+ NPTH + + + P++ N A +R A + +P+ + LA Sbjct: 121 IENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLA 180 Query: 322 RSLFKQ 327 RSLFK Sbjct: 181 RSLFKT 186 >gi|323180302|gb|EFZ65854.1| surface presentation of antigens protein spaS [Escherichia coli 1180] Length = 210 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 8/212 (3%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 +L +YL + F ++ + S L +L + + D + + + IP L Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGVGWLKTNIPFL 52 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 L+ M I Q L VK F ++ G+KRI+ + + F+K+ + I+ Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIVFFA 112 Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219 I + + + + + + S+L + +++ L + + + D Y + Sbjct: 113 LAIKVFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172 Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 +KM KQE+K E K+ GNP IK++++ R Sbjct: 173 KDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 204 >gi|187919907|ref|YP_001888938.1| putative type III secretion transmembrane protein, EscU/SctU/YscU-like protein [Burkholderia phytofirmans PsJN] gi|187718345|gb|ACD19568.1| putative type III secretion transmembrane protein, EscU/SctU/YscU-like protein [Burkholderia phytofirmans PsJN] Length = 246 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 108/247 (43%), Gaps = 3/247 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 +KTEAP+ ++ A +G+ S S+ S L L++LL +P +Y V + + Sbjct: 3 DKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFLLMD-APHVYQVCVHVVEVATQ 61 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 Q + + ++ +T +A +++ L + + + + Q V + P FK Sbjct: 62 IDQGQPFAVRYL--QITRAFGAAMPILLATLGVGALAVVVPEVAQAGGVFAVKRALPDFK 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R++ G+K ++ + L++ ++ ++ ++ + +L + L Sbjct: 120 RLNPVTGLKNLFGLKTLIDTGIVLMQFCILVFVLWHAFATWCAQLLPAFALAFGGQLSVT 179 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248 ++ ++ ++ +D QW +L+M K EIK E + G+P +K R+++ Sbjct: 180 AQSLAQLQGLMAASQLAPAAIDFWLQRLQWRRRLRMDKNEIKREHRDEDGDPHVKGRRRA 239 Query: 249 IARSRIR 255 + R R Sbjct: 240 LHRELSR 246 >gi|323152630|gb|EFZ38906.1| flagellar biosynthetic flhB domain protein [Escherichia coli EPECa14] Length = 169 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ + S ++ V + Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 ++P F +++ GIKR++S +K+ +K ILVG++ Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFF 162 >gi|254460203|ref|ZP_05073619.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium HTCC2083] gi|206676792|gb|EDZ41279.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium HTCC2083] Length = 217 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 1/218 (0%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D +K+ P+ KK++D +G S E ++ S + L + S + Sbjct: 1 MAEEDDVADKSHDPTQKKLDDVRKKGEVAKSNEVNVALSYFGIWVLLAVLGGVSVSSFGT 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L +A R+ + L L L A + V ++ + + L +R + Sbjct: 61 TLQSGLLNAFSRE-PSLHFSPGLFAPLLLGAGQFVGLMAIMPAALIVLALLARRTFLFTS 119 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 + +KP R+S+ + K + L F KSFVK+++ + + L N+ T++ +A+ Sbjct: 120 SKLKPKASRISILKNAKNKFGRGGLFEFAKSFVKLLVFSLCLGLFLNANFDTIVVTSAAS 179 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 + F + L + +L A + ++D GW + Sbjct: 180 ERGAISVLFDLMTSFLSLAVLIAAVIAIIDYGWQVSEH 217 >gi|270487693|ref|ZP_06204767.1| conserved domain protein [Yersinia pestis KIM D27] gi|270336197|gb|EFA46974.1| conserved domain protein [Yersinia pestis KIM D27] Length = 216 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 3/218 (1%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +++ K+E P++ K+ A +G+ P S++ ++ + ++ I L F P ++ S Sbjct: 2 SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKALVSQSF 60 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 V +A + + + FLL +L + A L L+ +F + + LI + Sbjct: 61 VSVAQLASQLDDQGALEQFLLANLFIFAKFL--ATLIPIPLFSMLATLIPGGWNFTPVKL 118 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 P K++S GIKRI+S +N +K K +V + + + + +L + Sbjct: 119 IPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEE 178 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221 + F +L+ + + +DI S+H + K Sbjct: 179 AITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKK 216 >gi|330893300|gb|EGH25961.1| type III secretion component protein HrcU [Pseudomonas syringae pv. mori str. 301020] Length = 140 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTE 285 IK E KQS G+P +K ++ ++ + + A A +++ NPTHYA+AL Y E Sbjct: 1 IKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGE 60 Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345 P++ KG++ A + A + IP+ + L R+L++ + IP +AV + Sbjct: 61 TPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHI 119 Query: 346 IYKIYHK 352 + Sbjct: 120 YKVVRQL 126 >gi|330883669|gb|EGH17818.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] Length = 138 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 R +L +IL + + ++D + KL+MS ++IK E KQS G+P +K ++ ++ Sbjct: 1 LFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLS 60 Query: 251 RSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307 + + A A +++ NPTHYA+AL Y E P++ KG++ A + A Sbjct: 61 HEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARA 120 Query: 308 YEHNI 312 + I Sbjct: 121 KKAGI 125 >gi|224170147|ref|XP_002339344.1| predicted protein [Populus trichocarpa] gi|222874949|gb|EEF12080.1| predicted protein [Populus trichocarpa] Length = 113 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 44/100 (44%), Positives = 67/100 (67%) Query: 253 RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312 R +MM AT+++TNPTH+A+A+RY APV+VAKGQ+ +A +RKIA E + Sbjct: 1 MARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVALNIRKIAREARV 60 Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 P+ E P LAR+L+ P++ IP FY+AVA+++ +Y + Sbjct: 61 PVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 100 >gi|213024578|ref|ZP_03339025.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 183 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 61/127 (48%) Query: 201 LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260 + +LD Y +KM K+E+K E+K+ GNP +K++++ + + ++ Sbjct: 15 ACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKS 74 Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320 + +I+ NPTH + + + P++ N A +R A + +P+ + L Sbjct: 75 DIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKL 134 Query: 321 ARSLFKQ 327 ARSLFK Sbjct: 135 ARSLFKT 141 >gi|315301909|ref|ZP_07872922.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596] gi|313629725|gb|EFR97845.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596] Length = 182 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 5/186 (2%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQGFVAL 61 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L +++ I + ++++P +++ ++FG+ +Y +Q + + VKP Sbjct: 62 LKQP-----PNLASIESYSLFYIMEFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185 FKR++ KR++S+ +V +K+ + I L+ + I ++ T++ + N L Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSL 176 Query: 186 YHAFFT 191 F Sbjct: 177 KQIFSL 182 >gi|149912839|ref|ZP_01901373.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b] gi|149813245|gb|EDM73071.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b] Length = 119 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 58/107 (54%) Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301 +K ++ A + + A ++I NPTHYA+AL + + N APV VAKG + +A Sbjct: 1 MKQERRQRASRLASDQTIADVPNADVVIVNPTHYAVALTWSRAPNSAPVCVAKGVDYMAL 60 Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 +R++A +H +P+ +P AR++ I I P Y+AVA I Sbjct: 61 AIREMAEDHGVPVRSDPPTARAIHATTEIGMEIDPGQYQAVAAAIRF 107 >gi|154175076|ref|YP_001408824.1| putative flagellar assembly protein [Campylobacter curvus 525.92] gi|112803684|gb|EAU01028.1| putative flagellar assembly protein [Campylobacter curvus 525.92] Length = 215 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D KTE +SKKIEDA +GN P S++ + F++++ ++ LL + Sbjct: 1 MADDD--QEKTEEATSKKIEDAKKDGNVPKSQDIAGFATLVIAILVLLAML-NFMREQVV 57 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L++ + ++ S + ++ + + +++P + + GI + ++Q + Sbjct: 58 ALYIYYSKFIGVEI-TPSALNLIVINTLARSLLMILPICICVAIAGIVANVMQFGFIFTT 116 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168 + P +++ +G+K ++S+ ++ +K K+ V + + Sbjct: 117 KPITPDINKINPLKGLKNLFSMKKAIDSVKIVAKVSAVFGVAFYFFLQ 164 >gi|46204446|ref|ZP_00049997.2| COG1377: Flagellar biosynthesis pathway, component FlhB [Magnetospirillum magnetotacticum MS-1] Length = 97 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/93 (49%), Positives = 68/93 (73%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M+ RAT++I NPTH+A+ALRY TEN AP+++AKGQ+LIA ++R IA E I + E+ Sbjct: 1 MLANVDRATVVIANPTHFAVALRYEPTENPAPLVLAKGQDLIALRIRAIAEEKGIAVIED 60 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 LARSL+ V ++ IP FY+AVAQ+++ ++ Sbjct: 61 KPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 93 >gi|226326420|ref|ZP_03801938.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198] gi|225205203|gb|EEG87557.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198] Length = 145 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 60/133 (45%) Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281 + M K E+K E K G+P IK+ +K + + + M + ++ +I NPTH A+ + + Sbjct: 1 MMMEKHEVKQENKNMEGDPEIKSTRKQLHQELLDEPMKKVIRDSSAVIVNPTHVAVGIYF 60 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341 P++ K N A ++ A E P+ P LAR ++ + + + Sbjct: 61 DPDNGIMPLVSLKCVNAKALAVKSYAKEVGTPVVRYPELARKIYHRYHLFEVMMDQDLLD 120 Query: 342 VAQLIYKIYHKKI 354 + ++ + +I Sbjct: 121 IMDILIWLKKIEI 133 >gi|315256731|gb|EFU36699.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 85-1] Length = 192 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 ++ G+KRI+ + + F+K+ + IIL Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFFFCHW 150 >gi|300906602|ref|ZP_07124293.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 84-1] gi|300401641|gb|EFJ85179.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 84-1] Length = 192 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 ++ G+KRI+ + + F+K+ + IIL + Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFFFLHW 150 >gi|261884065|ref|ZP_06008104.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 99 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 52/92 (56%), Positives = 71/92 (77%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M+ A AT+I+ NPTH+++ALRY E+ APV+VAKGQ+LIA K+R+IA H+IP+FE+ Sbjct: 1 MINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFED 60 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 LAR+L+KQV ++ I P FYKAVA+LI I Sbjct: 61 VQLARALYKQVNVDQMIAPEFYKAVAELIRII 92 >gi|71388156|gb|AAZ31290.1| EpaS1 [Escherichia coli] Length = 155 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 8/155 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 ++ G+KRI+ + + F+K+ + IIL I Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFFCIG 149 >gi|323183412|gb|EFZ68809.1| surface presentation of antigens protein spaS [Escherichia coli 1357] Length = 190 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 ++ G+KRI+ + + F+K+ + IIL Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFL 146 >gi|309793919|ref|ZP_07688344.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 145-7] gi|308122326|gb|EFO59588.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 145-7] Length = 188 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 11/179 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPNIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSI 184 ++ G+KRI+ + + F+K+ + I+ + + + + +L IS + I Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFLHWRSKYFGVIINHCFLKLLMEISYLYYQI 173 >gi|300820658|ref|ZP_07100809.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 119-7] gi|300526922|gb|EFK47991.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 119-7] Length = 188 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 11/179 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSI 184 ++ G+KRI+ + + F+K+ + I+ + + + + +L IS + I Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFLHWRSKYFGVIINHCFLKLLMEISYLYYQI 173 >gi|229195982|ref|ZP_04322734.1| Flagellar biosynthetic protein [Bacillus cereus m1293] gi|228587364|gb|EEK45430.1| Flagellar biosynthetic protein [Bacillus cereus m1293] Length = 108 Score = 117 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 60/102 (58%) Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309 + ++ + + AT I+ NPTH ++ LRY + + AP++VAKG++ +A +R +A E Sbjct: 1 MHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRTLARE 60 Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 IP+ E LARSL+ QV + AIP Y AV +++ + Sbjct: 61 QEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 102 >gi|213620930|ref|ZP_03373713.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 123 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 34/75 (45%), Positives = 52/75 (69%) Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 + +MME +A +I+TNPTHY++AL+Y + + AP +VAKG LIA ++R+I EH +P Sbjct: 1 QRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPT 60 Query: 315 FEEPSLARSLFKQVP 329 E P LAR+L++ Sbjct: 61 LEAPPLARALYRHAE 75 >gi|301026126|ref|ZP_07189600.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 196-1] gi|299879821|gb|EFI88032.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 196-1] Length = 188 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 11/179 (6%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L +L Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + IP LL+ M I Q L VK Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSI 184 ++ G+KRI+ + + +K+ + II + + + + +L IS + I Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFLHWRSKYFGVIINHCFLKLLMEISYLYYQI 173 >gi|217032175|ref|ZP_03437674.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128] gi|216946165|gb|EEC24774.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128] Length = 164 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ M+ ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILMVVAFLFNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165 ++P F +++ G+K ++S+ L++ +K+ LV S Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLVFFSWGFS 159 >gi|254691438|ref|ZP_05154692.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str. 870] Length = 146 Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 70/146 (47%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++ ++KTE + +KI DAL++GN P SREA + + I + L+ +F +P + Sbjct: 1 MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+ L L + L+L+ ++P ++ + GI + Q P Sbjct: 61 FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLV 146 ++P R+S +G +RI+ V Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQV 146 >gi|1196944|gb|AAD15121.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 154 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 68/147 (46%) Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 R + D + I+ + L +A ++P + ++ + S ++ + + ++P F Sbjct: 7 HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKF 66 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 +++ GIKR++S +K+ +K LVG + L ++ M+ ++ +P + + Sbjct: 67 SKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAESPIVAMGN 126 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWS 214 A V ++++L + + D+ + Sbjct: 127 ALDLVGLCALLVVLGVIPMVGFDVFFQ 153 >gi|213029691|ref|ZP_03344138.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 107 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%) Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315 + ++ ++ ++ NPTH A+ L Y T+ P ++ KG + A + IA + IP+ Sbjct: 2 GSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVV 61 Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E LARSLF +V IP ++ VA L+ + Sbjct: 62 ENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 97 >gi|74317194|ref|YP_314934.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] gi|74056689|gb|AAZ97129.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans ATCC 25259] Length = 261 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 108/257 (42%), Gaps = 11/257 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + ++TE S+++++DA G+ P S E + + +LA + L + + Sbjct: 1 MAEEND-LSRTEPASARRLQDARAAGDVPRSSEFAAWLVLLAAIGVLSWQGP----RLLG 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L+A+A Q + S V SA V+P L + + + L+ V Sbjct: 56 SLQTLVATALQHAAKPFSPAV---VEAVGSALWAVLPVLGAVFVAALIAPLLLSRWVYAP 112 Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180 P R + R++S++++ + + +K+ L + + + + + Sbjct: 113 -GSHPR--RRHPFHAVARLFSLDSVADLALTLLKVALAALAVWWAFGASTPGIAALDAIA 169 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240 + A + ++ ++ +A + LD GW + ++ + M+ QE+ E +++ +P Sbjct: 170 ADAAPEAAAGWLGHGVLALVAGLALVAALDAGWQWLRYLRRHAMTWQEVLAEAREAEVHP 229 Query: 241 IIKNRQKSIARSRIRHK 257 I+ + + + Sbjct: 230 EIRAQLRGRQQQAGARP 246 >gi|302390418|ref|YP_003826239.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646] gi|302201046|gb|ADL08616.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646] Length = 96 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL+Y ++ AP +VA G+ A+++ + A EH IP+ +P LA +L V + Sbjct: 8 PQRKAVALKYDPEKDGAPRVVASGRGETAERIIQTAKEHGIPLHTDPELAGALL-SVEVG 66 Query: 332 SAIPPVFYKAVAQLIYKIYHK 352 IPP Y+AVA+++ IY Sbjct: 67 LEIPPELYRAVAEILAFIYRL 87 >gi|301303006|ref|ZP_07209133.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 124-1] gi|300841670|gb|EFK69430.1| surface presentation of antigens protein SpaS domain protein [Escherichia coli MS 124-1] Length = 155 Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 8/142 (5%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 NKTE P+ KK++DA +G SR+ ++ +L +YL + F ++ + S L + Sbjct: 3 NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + D + + + +IP LL+ M I Q L VK F Sbjct: 61 NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114 Query: 129 RVSLREGIKRIYSINNLVNFMK 150 ++ G+KRI+ + + F+K Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVK 136 >gi|330975861|gb|EGH75927.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 195 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 78/196 (39%), Gaps = 3/196 (1%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGFTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 +++ K+++S NL+N + S +K I +G + + + T++ +++ + + Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179 Query: 189 FFTVRKVLIMILLFIA 204 R +L +IL + Sbjct: 180 VELFRHILRVILGLLL 195 >gi|218515300|ref|ZP_03512140.1| flagellar biosynthesis protein FlhB [Rhizobium etli 8C-3] Length = 151 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 70/121 (57%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63 +D D+KTEAP+++K DA +GN P SRE S+F++ILA IYL+FF + ++ L Sbjct: 31 DDDKDSKTEAPTARKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 90 Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + Q K+E I+ L L +++ L+ P +L M+FGI S + Q +P L + Sbjct: 91 DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 150 Query: 124 K 124 + Sbjct: 151 R 151 >gi|108762856|ref|YP_630671.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] gi|108466736|gb|ABF91921.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622] Length = 94 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +++ A+AL+Y + ++ AP +VAKG L A+K+R+IA EHNIP+ +LA +L++ V Sbjct: 1 MSDDAEIAIALKYDKEKDGAPRVVAKGMRLKAEKIREIAREHNIPLMRNVNLANALYR-V 59 Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353 + +P Y AVA+++ +Y + Sbjct: 60 EVGQEVPEELYDAVAEVLNFVYELQ 84 >gi|317051555|ref|YP_004112671.1| type III secretion exporter [Desulfurispirillum indicum S5] gi|316946639|gb|ADU66115.1| type III secretion exporter [Desulfurispirillum indicum S5] Length = 128 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y Q ++ AP++ AKGQ +A+ + A EH + I E+P L +L + I+ IP Sbjct: 47 AVALKY-QDKSRAPLVSAKGQGHVAEAIIDKAREHGVAIHEDPDLVVAL-SALEIDQEIP 104 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA+++ +Y + Sbjct: 105 EELYQAVAEVLAFLYKQ 121 >gi|289811230|ref|ZP_06541859.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 93 Score = 107 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 43/83 (51%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + NPTH A+ L Y T+ P ++ KG + A + IA + IP+ E LARSLF +V Sbjct: 1 MRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEV 60 Query: 329 PINSAIPPVFYKAVAQLIYKIYH 351 IP ++ VA L+ + Sbjct: 61 ERGDKIPETLFEPVAALLRMVMK 83 >gi|167463786|ref|ZP_02328875.1| FlhB domain protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382570|ref|ZP_08056450.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153486|gb|EFX45891.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 110 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + APV++AKG IA+ + A EH IP+ E+PSL L ++ ++ IP Sbjct: 20 AVALKYNPGQGQAPVVIAKGTGKIAEDILSKAEEHGIPVQEDPSLVEVL-SKLDLDQEIP 78 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ VA+++ IY Sbjct: 79 PELYQLVAEILTFIYR 94 >gi|115377833|ref|ZP_01465021.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca DW4/3-1] gi|310820311|ref|YP_003952669.1| type III secretion exporter family protein [Stigmatella aurantiaca DW4/3-1] gi|115365165|gb|EAU64212.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca DW4/3-1] gi|309393383|gb|ADO70842.1| Type III secretion exporter family protein [Stigmatella aurantiaca DW4/3-1] Length = 93 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + + A+AL+Y Q ++ AP +VAKG L A+K+R+IA ++NIP+ + LA +L++ V Sbjct: 1 MNDEAEIAIALKYDQNKDSAPRVVAKGMRLKAEKIREIAKQYNIPVMKNLPLASALYR-V 59 Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353 + +P Y AVA+++ +Y + Sbjct: 60 DVGQEVPEELYDAVAEVLNFVYALQ 84 >gi|148645122|gb|ABR01085.1| FlhB [uncultured Geobacter sp.] Length = 89 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 58/89 (65%) Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286 QE+KDE K S G+P +K +QK R +M + A +++TNPTHYA+AL+Y + + Sbjct: 1 QEVKDEHKNSEGDPAVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRFKM 60 Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315 APV++ KG + +A +++ +A E+N+ + Sbjct: 61 AAPVVLFKGVDQMALQIKIVARENNVMLV 89 >gi|297617102|ref|YP_003702261.1| type III secretion exporter [Syntrophothermus lipocalidus DSM 12680] gi|297144939|gb|ADI01696.1| type III secretion exporter [Syntrophothermus lipocalidus DSM 12680] Length = 92 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++APV+ AKG+ L+A+K+ ++A E +PI E+P L L + I IP Sbjct: 11 AVALRYDPEIHEAPVVTAKGRGLLAEKIIELARESGVPIKEDPQLVEYL-AMLDIYQEIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+ VA+++ +Y Sbjct: 70 PELYQVVAEILAFVYRL 86 >gi|167949065|ref|ZP_02536139.1| flagellar biosynthesis protein FlhB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 169 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 70/152 (46%) Query: 67 ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + +++++ D+S ++ LT SA +++P L+ ++ + S ++ ++ ++ P Sbjct: 5 FTISRQEIFDVSSMLVRLTESLQSAFMMLLPYFLVMVVLAVASSVVLGGLAVSSENLMPK 64 Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186 ++S +GIKR++S L+ +K+ K +L+G + + L L + H Sbjct: 65 LSKLSPLKGIKRMFSAKALIEVVKAIAKFVLIGGLTVLLLWNTLENYLQLHEMDLHQGFD 124 Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 V +I++ + + +D+ + Sbjct: 125 LISSLVGWSVILLASTLILIAAIDVPFQLWDH 156 >gi|213855713|ref|ZP_03383953.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 93 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 AKG LIA ++R+I EH +P E P LAR+L++ I IP Y AVA+++ ++ Sbjct: 1 AKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 60 Query: 353 K 353 K Sbjct: 61 K 61 >gi|226313194|ref|YP_002773088.1| hypothetical protein BBR47_36070 [Brevibacillus brevis NBRC 100599] gi|226096142|dbj|BAH44584.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 96 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +AP +VAKG+ +A + K A EH+IP+ E+PSL L ++ ++ IP Sbjct: 14 AVALKYQAGTMEAPKVVAKGKGYVADNILKTAKEHDIPVQEDPSLVEVL-GKLDLDQQIP 72 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ VA+++ +Y Sbjct: 73 PELYQVVAEILAFVYR 88 >gi|258404776|ref|YP_003197518.1| hypothetical protein Dret_0648 [Desulfohalobium retbaense DSM 5692] gi|257797003|gb|ACV67940.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692] Length = 89 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++++DAP +VA GQ +A+++ A E ++P+ E+P L L QVP+ IP Sbjct: 9 AVALKYERSKDDAPRVVASGQGRLAERILATAEEADVPLREDPDLLEVL-AQVPVGDEIP 67 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA+++ +Y Sbjct: 68 EDLYQAVAEILAFVYRL 84 >gi|320102430|ref|YP_004178021.1| hypothetical protein Isop_0882 [Isosphaera pallida ATCC 43644] gi|319749712|gb|ADV61472.1| hypothetical protein Isop_0882 [Isosphaera pallida ATCC 43644] Length = 310 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 107/303 (35%), Gaps = 19/303 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF----SPGIY 56 MSE +T+AP+ ++ +A G P + + + + A L+ L + S I Sbjct: 1 MSE-----ERTQAPTPRQRAEARRNGLVPFAPNLTAAAGLAAGLVGLAAWGNAAASGWIG 55 Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116 T L+ + I+H +T L L+ + +L ++ ++ Q + Sbjct: 56 LATRSWSDLMLNPPSHAPLSINHATTSVTSLVLATVTPTLNIILAPVVAMTLIHVTQTLG 115 Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSI-----NNLVNFMKSFVKIILVGTIITISLTENYF 171 + + P +R+ + + + + ++ + ++ L Sbjct: 116 NITPARLIPDPRRLWRPHHWEEL-GMGTALGRGVGEALRFLGFLGATIGVVGWGLMAVDH 174 Query: 172 TMLDFISANPHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227 + + L A + + + +A L +L+ W + +L + + Sbjct: 175 VSETMTTFPLPNALPSRFAQAVQLTWRWSLSLTAGLAILGLLEFAWRWRDVERRLMRTPE 234 Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287 E +DE + S NP + R++ +AR R A + T P+ + + Sbjct: 235 ENRDERRSSESNPAWRARRRELARQRGLRLDPRQDRTANLAATPPSLSVPSNLERPADPS 294 Query: 288 APV 290 P+ Sbjct: 295 LPI 297 >gi|86749459|ref|YP_485955.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris HaA2] gi|86572487|gb|ABD07044.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris HaA2] Length = 89 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL Y + AP +VAKG+ I K+ ++A EHN+PI E LA +L V + Sbjct: 8 QIAVALYYD--KGGAPRVVAKGRGTIGAKIIEVAKEHNVPIEENEVLAGAL-SHVELGDE 64 Query: 334 IPPVFYKAVAQLIYKIYHK 352 IP YKAVA+++ + Sbjct: 65 IPEELYKAVAEVLVFVLKL 83 >gi|313896280|ref|ZP_07829833.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975079|gb|EFR40541.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 107 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + M A + A+A+RY ++ AP + AKG++ +A ++ A ++ IP Sbjct: 1 MPENWMPDAPPADDLSEEQEQKAVAVRYDVEKDRAPRVTAKGRSFVADRILAEAKKNGIP 60 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++ SL L + I+ IPP Y+ +A+++ +Y Sbjct: 61 VYQNKSLVNMLMA-LEIDREIPPELYRTIAEVLAHVYR 97 >gi|222055862|ref|YP_002538224.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32] gi|221565151|gb|ACM21123.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32] Length = 106 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG + A+ + +A E+ + + E P L L K V + IP Sbjct: 11 AVALAYNPAGDYAPRVVAKGCGVTAEAIIALARENGVYVHESPDLVNLLLK-VDQDRYIP 69 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+AVA+L+ +Y + Sbjct: 70 PELYRAVAELLAWLYQLE 87 >gi|330883125|gb|EGH17274.1| type III secretion component protein HrcU [Pseudomonas syringae pv. glycinea str. race 4] Length = 116 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314 + A +++ NPTHYA+AL Y E P++ KG++ A + A + IP+ Sbjct: 6 PSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPV 65 Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 + L R+L++ + IP +AV + + Sbjct: 66 VQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 102 >gi|207109322|ref|ZP_03243484.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPKX_438_CA4C1] Length = 134 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + FF + + Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 +L + + L L+ L++P L++ ++ S ++Q + Sbjct: 57 MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114 Query: 121 NHVKPSFKRVSLREGIKRIY 140 ++P F +++ G+K ++ Sbjct: 115 KVIEPKFSKINPINGVKNLF 134 >gi|297570293|ref|YP_003691637.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2] gi|296926208|gb|ADH87018.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2] Length = 104 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+ALRY + AP +VAKG +A+K+ IA EH +PI E+ L + ++ Sbjct: 18 TPPRKKAVALRYDAEQQSAPQMVAKGSGTVAEKLIAIAREHGVPIHEDADLTE-ILSRLD 76 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 + IPP Y VA+++ IY Sbjct: 77 LYQEIPPETYLLVAEILAFIYR 98 >gi|185177885|pdb|3BZL|C Chain C, Crystal Structural Of Native Escu C-Terminal Domain gi|185177887|pdb|3BZL|D Chain D, Crystal Structural Of Native Escu C-Terminal Domain gi|185177889|pdb|3BZO|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain gi|185177903|pdb|3C00|B Chain B, Crystal Structural Of The Mutated G247t EscuSPAS C- Terminal Domain Length = 83 Score = 99.9 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 45/75 (60%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|295399795|ref|ZP_06809776.1| type III secretion exporter [Geobacillus thermoglucosidasius C56-YS93] gi|312111693|ref|YP_003990009.1| type III secretion exporter [Geobacillus sp. Y4.1MC1] gi|294978198|gb|EFG53795.1| type III secretion exporter [Geobacillus thermoglucosidasius C56-YS93] gi|311216794|gb|ADP75398.1| type III secretion exporter [Geobacillus sp. Y4.1MC1] Length = 92 Score = 99.5 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++APV+VAKG+ +A+ + A +H IPI E+PSL + L ++ IN IP Sbjct: 8 AVALSYDANIHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSELEINEVIP 66 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA++ IY Sbjct: 67 EDLYRLVAEVFAFIYRL 83 >gi|320529139|ref|ZP_08030231.1| FlhB domain protein [Selenomonas artemidis F0399] gi|320138769|gb|EFW30659.1| FlhB domain protein [Selenomonas artemidis F0399] Length = 107 Score = 99.5 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313 + M A + A+A+RY ++ AP + AKG++L+A ++ A ++ IP Sbjct: 1 MPENWMMDAPPADDLSEEQEQKAVAVRYDVEKDRAPRVTAKGRSLVADRILAEAKKNGIP 60 Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 +++ SL L + I+ IPP Y+ +A+++ +Y Sbjct: 61 VYQNKSLVNMLMA-LEIDREIPPELYRTIAEVLAHVYR 97 >gi|319789483|ref|YP_004151116.1| type III secretion exporter [Thermovibrio ammonificans HB-1] gi|317113985|gb|ADU96475.1| type III secretion exporter [Thermovibrio ammonificans HB-1] Length = 92 Score = 99.5 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + + AP +VAKG+ ++A+K+ +IA +P+ + L L QV + + IP Sbjct: 6 AAALKYERGKMRAPRVVAKGEGVVAEKIVEIARRSGVPVLQNRGLVEFLL-QVDLGAEIP 64 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+AVA+L+ +Y Sbjct: 65 PELYRAVAELLAYVYR 80 >gi|304404230|ref|ZP_07385892.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9] gi|304347208|gb|EFM13040.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9] Length = 104 Score = 99.5 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E APV++AKG+ +A+ + A E+ +PI E+ SL L ++ I+ IP Sbjct: 20 AVALKYEPGERSAPVVIAKGKGHLAEAIVAKAAENGVPIQEDSSLVEVL-SKLDIDQEIP 78 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+++ +Y Sbjct: 79 QELYALVAEILSFVYR 94 >gi|39936268|ref|NP_948544.1| Type III secretion proteins related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris CGA009] gi|39650123|emb|CAE28646.1| Type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris CGA009] Length = 91 Score = 99.5 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 + T T ALA+ AP +VAKG+ ++ K+ ++A +H+IPI E LA +L Sbjct: 1 MTTTDTKNALAIALHYDYAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SH 59 Query: 328 VPINSAIPPVFYKAVAQLIYKIYHK 352 V + IP YKAVA+++ + Sbjct: 60 VELGDEIPEELYKAVAEVLAFVLRL 84 >gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacterium sp. Marseille] gi|151283317|gb|ABR91727.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 95 Score = 99.1 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+AL Y Q+ + AP +VAKG+ IA+++ + A EH + I E L +L QV Sbjct: 4 TTPPQQAVALAY-QSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELV-ALLLQVE 61 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 ++ IPP Y+AVA+L+ +Y Sbjct: 62 LDEHIPPALYRAVAELLAWLYR 83 >gi|92117130|ref|YP_576859.1| type III secretion protein [Nitrobacter hamburgensis X14] gi|91800024|gb|ABE62399.1| type III secretion protein [Nitrobacter hamburgensis X14] Length = 89 Score = 99.1 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL Y + + AP +VAKG+ + K+ ++A EH+IPI E LA +L V + Sbjct: 8 QVAVALHYDKG-SGAPRVVAKGRGSLGAKIIEVAREHDIPIEENEVLAGAL-SHVELGDE 65 Query: 334 IPPVFYKAVAQLIYKIYHK 352 IP YKAVA+++ + Sbjct: 66 IPSELYKAVAEVLVFVLRL 84 >gi|297538192|ref|YP_003673961.1| type III secretion exporter [Methylotenera sp. 301] gi|297257539|gb|ADI29384.1| type III secretion exporter [Methylotenera sp. 301] Length = 119 Score = 99.1 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 + NP A+AL Y E AP +VAKG+ IA+++ A EH++ + E L +L Q Sbjct: 25 SVVNPNQQAIALAYAAGEY-APKVVAKGRGAIAEQIIARAKEHDVFVHESKDLV-ALLMQ 82 Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353 V ++ IPP Y+A+A+++ +Y + Sbjct: 83 VDLDDHIPPALYQAIAEILAWLYKLE 108 >gi|167630262|ref|YP_001680761.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167593002|gb|ABZ84750.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 99 Score = 99.1 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + + AP ++A G+ +A+K+ +IA E IP++E+P+L + L ++ + IP Sbjct: 15 AVALRYDPSADAAPKVIATGKGHLARKILEIAREKEIPVYEDPTLVQ-LLSKLDLGVEIP 73 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+ VA+++ +Y Sbjct: 74 PELYRMVAEVLAFVYRL 90 >gi|83647067|ref|YP_435502.1| flagellar protein FhlB cytoplasmic domain-containing protein [Hahella chejuensis KCTC 2396] gi|83635110|gb|ABC31077.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Hahella chejuensis KCTC 2396] Length = 116 Score = 99.1 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKG+ +A+++ IA EH +P++E P L RSL Q+ + IP Sbjct: 24 AIALFYDGKQ--APKVSAKGEADLAEEIIAIAREHGVPLYENPELVRSL-AQLDLGDEIP 80 Query: 336 PVFYKAVAQLIYKIYHKK 353 + Y+ +A++I YH + Sbjct: 81 ELLYRVIAEIIAFAYHIQ 98 >gi|149183637|ref|ZP_01862054.1| flagellar biosynthesis [Bacillus sp. SG-1] gi|148848654|gb|EDL62887.1| flagellar biosynthesis [Bacillus sp. SG-1] Length = 94 Score = 98.7 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP +VAKG+ LIA+ + + A EH +P+ E+ +L L + IN +IP Sbjct: 12 AIALQYESEKQQAPKVVAKGKGLIAENILEKAREHGVPVQEDRNLVE-LLGNLDINESIP 70 Query: 336 PVFYKAVAQLIYKIYH 351 Y+AVA++ +Y Sbjct: 71 EELYQAVAEVFAFLYR 86 >gi|327398785|ref|YP_004339654.1| type III secretion exporter [Hippea maritima DSM 10411] gi|327181414|gb|AEA33595.1| type III secretion exporter [Hippea maritima DSM 10411] Length = 83 Score = 98.3 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E++AP +VAKG+ +A K+ K A +H+I I ++P LA SL+K V +N IP Sbjct: 8 AVALRYKNQEDNAPKVVAKGRGFLADKIEKTAKKHSIYIEKDPLLAESLYK-VKLNEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ IY Sbjct: 67 EELYEAVAKILAYIY 81 >gi|89094428|ref|ZP_01167368.1| probable flagellar biosynthesis-related protein [Oceanospirillum sp. MED92] gi|89081320|gb|EAR60552.1| probable flagellar biosynthesis-related protein [Oceanospirillum sp. MED92] Length = 109 Score = 98.3 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y Q AP++VAKG IA+++ +A E+ I I E P L L + + + IP Sbjct: 15 AIALKYDQELGKAPLIVAKGMGEIAEQIINLAEENGIHIHESPELVEVLIR-LELGDEIP 73 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+A+A++I Y K Sbjct: 74 ESLYRAIAEVIAFAYSLK 91 >gi|85859194|ref|YP_461396.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] gi|85722285|gb|ABC77228.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] Length = 92 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A A+RY T + AP + AKG +A+K+ ++A ++NIP+ +P L + L + + I+ Sbjct: 5 QLAAAIRYDGTVDVAPKVTAKGCGFVAEKIIELAQKNNIPVRNDPGLVQILCR-LDIDEQ 63 Query: 334 IPPVFYKAVAQLIYKIY 350 IP YKAVA+++ +Y Sbjct: 64 IPEDLYKAVAEILAYVY 80 >gi|300982208|ref|ZP_07175920.1| conserved domain protein [Escherichia coli MS 200-1] gi|300307278|gb|EFJ61798.1| conserved domain protein [Escherichia coli MS 200-1] Length = 149 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120 L L + D + I+ + L A ++P + ++ I S ++ L Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGWYLAE 117 Query: 121 NHVKPSF 127 N SF Sbjct: 118 NPCSRSF 124 >gi|149376614|ref|ZP_01894374.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter algicola DG893] gi|149359132|gb|EDM47596.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter algicola DG893] Length = 100 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y APV+ A G + +A+++ +IA EHN+P++E P LA S+ ++ +N IP Sbjct: 13 AVALKYDGE--RAPVIAASGTHELAEEIIRIAREHNVPLYENPELA-SILARLELNDEIP 69 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ VA+++ ++ + Sbjct: 70 ETLYRVVAEILAFAFNLQ 87 >gi|229541105|ref|ZP_04430165.1| conserved hypothetical protein [Bacillus coagulans 36D1] gi|229325525|gb|EEN91200.1| conserved hypothetical protein [Bacillus coagulans 36D1] Length = 96 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + APV+ AKG+ +A+++ + A + N+PI ++P LA +L ++ IN AIP Sbjct: 11 AVALQYSPDAHSAPVVKAKGKGDVARRIIEEAKKANVPIQQDPDLA-ALLGRLDINEAIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 Y AVA++ IY Sbjct: 70 EELYAAVAEVFAMIYRL 86 >gi|154175297|ref|YP_001407951.1| FlhB domain-containing protein [Campylobacter curvus 525.92] gi|112802155|gb|EAT99499.1| FlhB domain protein [Campylobacter curvus 525.92] Length = 87 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G IA K+ +A EH IPI E+P L + +V I+ IP Sbjct: 8 AVALGYNREKNSAPKVLATGSGEIANKIISLAREHEIPIKEDPDLIE-ILSKVEIDQEIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ +Y Sbjct: 67 PNLYKAVAEIFSFLYK 82 >gi|313673501|ref|YP_004051612.1| type iii secretion exporter [Calditerrivibrio nitroreducens DSM 19672] gi|312940257|gb|ADR19449.1| type III secretion exporter [Calditerrivibrio nitroreducens DSM 19672] Length = 87 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 ALRY Q ++ AP +VAKG+ +IA+K+ + A EHN+ I E+P L +L+K + I IP Sbjct: 9 ALRYDQEKDSAPKVVAKGRGIIAEKILEKAKEHNVLIKEDPDLLEALYK-LDIYQEIPEN 67 Query: 338 FYKAVAQLIYKIYH 351 Y+ VA+++ ++Y Sbjct: 68 LYRVVAEILSEVYR 81 >gi|192291990|ref|YP_001992595.1| type III secretion protein [Rhodopseudomonas palustris TIE-1] gi|316933568|ref|YP_004108550.1| type III secretion exporter [Rhodopseudomonas palustris DX-1] gi|192285739|gb|ACF02120.1| type III secretion protein [Rhodopseudomonas palustris TIE-1] gi|315601282|gb|ADU43817.1| type III secretion exporter [Rhodopseudomonas palustris DX-1] Length = 91 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y AP +VAKG+ ++ K+ ++A +H+IPI E LA +L V + I Sbjct: 10 LAIALHYD--YAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SHVELGDEI 66 Query: 335 PPVFYKAVAQLIYKIYHK 352 P YKAVA+++ + Sbjct: 67 PEELYKAVAEVLAFVLRL 84 >gi|157165363|ref|YP_001466488.1| FlhB domain-containing protein [Campylobacter concisus 13826] gi|112800644|gb|EAT97988.1| FlhB domain protein [Campylobacter concisus 13826] Length = 87 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +++++AP ++A G IA K+ +A EH+IPI E+P L + +V ++ IP Sbjct: 8 AVALGYNRSQDNAPKVLASGAGEIANKIISLAKEHDIPIKEDPDLIE-ILSKVEVDQEIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ +Y Sbjct: 67 PNLYKAVAEIFSFLYK 82 >gi|119503687|ref|ZP_01625770.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma proteobacterium HTCC2080] gi|119460749|gb|EAW41841.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma proteobacterium HTCC2080] Length = 97 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++ALRY + AP++VA G IA ++ A E +P+ E+P LA+ L QVP+ IP Sbjct: 16 SVALRYD--GSQAPIVVATGSGEIADAIKAKAEESGVPVVEDPRLAQ-LLSQVPLGEEIP 72 Query: 336 PVFYKAVAQLIYKIYHKKI 354 Y+AVA+++ + ++ Sbjct: 73 AELYRAVAEVLVFVMQMEM 91 >gi|260887870|ref|ZP_05899133.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185] gi|330838735|ref|YP_004413315.1| type III secretion exporter [Selenomonas sputigena ATCC 35185] gi|260862376|gb|EEX76876.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185] gi|329746499|gb|AEB99855.1| type III secretion exporter [Selenomonas sputigena ATCC 35185] Length = 110 Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + AP +VAKG+ +A+ + A ++ IP+++ SL L + ++ IP Sbjct: 24 AVALRYAPEKQHAPKVVAKGRGFVAENILAAAQKNAIPVYQNKSLVNMLMA-LELDREIP 82 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+AVA+++ +Y Sbjct: 83 PELYRAVAEVLAYVYR 98 >gi|292670874|ref|ZP_06604300.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541] gi|292647495|gb|EFF65467.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541] Length = 110 Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP Sbjct: 25 AVAIKYDVKNDQAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 83 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ +A+++ +Y Sbjct: 84 PELYRTIAEVLAHVYR 99 >gi|308068636|ref|YP_003870241.1| FhlB domain-containing protein [Paenibacillus polymyxa E681] gi|305857915|gb|ADM69703.1| FhlB domain-containing protein [Paenibacillus polymyxa E681] Length = 99 Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++AP++VAKG +A + + A EH +P+ E+ +L L ++ ++ IP Sbjct: 15 AVALKYTPGESEAPIVVAKGSGRVADSILEKAKEHGVPVQEDAALVEVL-SKLDLDEQIP 73 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ IY Sbjct: 74 AELYQLVAEVLTYIYQM 90 >gi|206889780|ref|YP_002247874.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741718|gb|ACI20775.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio yellowstonii DSM 11347] Length = 88 Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ AP +VAKG+ IA+K+ ++A +H +P+ E+ +L L ++ I IP Sbjct: 7 AVALKYEAEKDAAPKVVAKGRGFIAQKIIELARQHGVPMKEDEALVEVL-SKLDIYEEIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 YKAVA+++ +Y K Sbjct: 66 VELYKAVAEILVFVYQVK 83 >gi|91977593|ref|YP_570252.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB5] gi|91684049|gb|ABE40351.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris BisB5] Length = 88 Score = 97.2 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL Y + AP +VAKG+ I K+ ++A +H+IPI E LA +L V + Sbjct: 8 QIAVALHYDR--AGAPRVVAKGKGTIGAKIIEVAKQHDIPIEENEVLAGAL-SHVELGEE 64 Query: 334 IPPVFYKAVAQLIYKIYHK 352 IP YKAVA+++ + Sbjct: 65 IPEELYKAVAEVLAFVLKL 83 >gi|90424888|ref|YP_533258.1| type III secretion protein [Rhodopseudomonas palustris BisB18] gi|90106902|gb|ABD88939.1| type III secretion protein [Rhodopseudomonas palustris BisB18] Length = 88 Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y + AP ++AKG+ I K+ ++A H+IPI E LA +L +V I Sbjct: 5 GPNQIAVALHYDR--TGAPTVIAKGKGAIGAKIVEVARAHDIPIEENEILAGAL-SKVEI 61 Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352 IP YKAVA+++ + Sbjct: 62 GDEIPQELYKAVAEVLVFVLRL 83 >gi|220934523|ref|YP_002513422.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995833|gb|ACL72435.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7] Length = 94 Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y + +AP + A G +A+++ +IA EH++P+ E+ L +L QVP+ Sbjct: 6 KPPRKAVALHY--SGRNAPRVTASGVGQVAERILEIAREHDVPVHEDALLTAAL-SQVPL 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y AVA+++ +Y Sbjct: 63 GDEIPENLYVAVAEVLAFVY 82 >gi|154686024|ref|YP_001421185.1| YlqH [Bacillus amyloliquefaciens FZB42] gi|154351875|gb|ABS73954.1| YlqH [Bacillus amyloliquefaciens FZB42] Length = 93 Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y + ++ AP +VA G+ +A+ + K A + +PI E+ +L L + + + Sbjct: 5 TPLRRAVALHYDRQKDQAPKVVATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTV 63 Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352 + IP Y+ VA++ +Y Sbjct: 64 DDQIPEALYETVAEIFSFVYRL 85 >gi|75675592|ref|YP_318013.1| type III secretion proteins, related to flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi Nb-255] gi|74420462|gb|ABA04661.1| type III secretion protein, related to flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi Nb-255] Length = 89 Score = 96.8 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL Y + + AP +VAKG+ + K+ ++A EH+IPI + LA +L V + Sbjct: 8 QVAVALHYDKG-SGAPRVVAKGRGSLGAKIIEVANEHDIPIEQNEVLADAL-SHVELGDE 65 Query: 334 IPPVFYKAVAQLIYKIYHK 352 IP YKAVA+++ + Sbjct: 66 IPAELYKAVAEVLVFVLRM 84 >gi|30250018|ref|NP_842088.1| flagellar biosynthetic protein [Nitrosomonas europaea ATCC 19718] gi|30139125|emb|CAD85989.1| possible similar to flagellar biosynthetic protein [Nitrosomonas europaea ATCC 19718] Length = 119 Score = 96.8 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y AP +VAKG+ LIA+++ + A E + + E L +L QV + Sbjct: 25 TPIPGAVALAYHSG-MTAPQVVAKGRGLIAEEIIRRAQEAGVYVHESAELV-ALLMQVDL 82 Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353 + IPP Y AVA+L+ +Y + Sbjct: 83 DDHIPPELYIAVAELLAWLYRLE 105 >gi|126654068|ref|ZP_01725894.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905] gi|126589448|gb|EAZ83595.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905] Length = 100 Score = 96.8 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L L Q+ +N +IP Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVH-LLGQLDLNESIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA++ IY Sbjct: 70 EELYQAVAEVFAFIYRL 86 >gi|88704263|ref|ZP_01101977.1| FlhB domain protein [Congregibacter litoralis KT71] gi|88701314|gb|EAQ98419.1| FlhB domain protein [Congregibacter litoralis KT71] Length = 100 Score = 96.8 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M + R+ P + AL Y AP+LVAKG+N IA ++ ++A ++++PI ++ Sbjct: 1 MSDNDKRSQSSAKGPATQSAALSYSGE--GAPLLVAKGENAIADRIVELASQNDVPIVQD 58 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 L L Q+P+ +PP Y AVA+++ +Y Sbjct: 59 GQLTE-LLCQIPLGEEVPPELYLAVAEVLAYVYRL 92 >gi|185177895|pdb|3BZV|B Chain B, Crystal Structural Of The Mutated T264a Escu C-Terminal Domain Length = 83 Score = 96.8 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P H A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 1 PAHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|239826600|ref|YP_002949224.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] gi|239806893|gb|ACS23958.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] Length = 90 Score = 96.8 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++APV+VAKG+ +A+ + A +H IPI E+PSL + L ++ IN IP Sbjct: 8 AVALSYDSNVHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSELEINETIP 66 Query: 336 PVFYKAVAQLIYKIYHK 352 Y VA+L IY Sbjct: 67 EDLYYLVAELFAFIYRL 83 >gi|85715097|ref|ZP_01046081.1| type III secretion protein [Nitrobacter sp. Nb-311A] gi|85698012|gb|EAQ35885.1| type III secretion protein [Nitrobacter sp. Nb-311A] Length = 89 Score = 96.4 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL Y + + AP +VAKG + K+ ++A EH+IPI E LA +L V + Sbjct: 8 QVAVALHYDKG-SGAPRVVAKGSGSLGAKIIEVAKEHDIPIEENEVLAGAL-SHVELGDE 65 Query: 334 IPPVFYKAVAQLIYKIYHK 352 IP YKAVA+++ + Sbjct: 66 IPAELYKAVAEVLVFVLRM 84 >gi|169827108|ref|YP_001697266.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41] gi|168991596|gb|ACA39136.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41] Length = 100 Score = 96.4 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L + L Q+ +N +IP Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA++ IY Sbjct: 70 EELYQAVAEVFAFIYRL 86 >gi|257092546|ref|YP_003166187.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045070|gb|ACV34258.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 108 Score = 96.4 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 TNP A+AL Y QT + AP +VAKG+ L+A+++ A+EH + + E L SL QV Sbjct: 6 TNPLKNAVALAYSQT-DAAPRVVAKGRGLVAEQIIARAHEHGVYVHESAELV-SLLLQVD 63 Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353 ++ IPP Y AVA+L+ +Y + Sbjct: 64 LDQHIPPQLYLAVAELLAWLYRLE 87 >gi|299536764|ref|ZP_07050072.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1] gi|298727776|gb|EFI68343.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1] Length = 100 Score = 96.4 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + D+P +VAKG+ IA+ + A EHN+PI+E+P+L + L Q+ +N +IP Sbjct: 11 AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA++ IY Sbjct: 70 EELYQAVAEVFAFIYRL 86 >gi|121533785|ref|ZP_01665612.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus carboxydivorans Nor1] gi|121307776|gb|EAX48691.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus carboxydivorans Nor1] Length = 96 Score = 96.4 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY Q AP +VAKG +A+++ A +H +P++++ +LA SL V ++ IP Sbjct: 12 AIALRYDQQTQQAPKVVAKGSGYVAEQILATAAQHAVPVYKDTALA-SLLMAVELDKEIP 70 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ VA+++ IY Sbjct: 71 PELYQVVAEVLAYIYR 86 >gi|71906417|ref|YP_284004.1| flagellar biosynthetic protein [Dechloromonas aromatica RCB] gi|71846038|gb|AAZ45534.1| possible flagellar biosynthetic protein [Dechloromonas aromatica RCB] Length = 93 Score = 96.4 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 ++PT A+AL Y QT + AP +VAKG+ LIA+++ A EH + + E P L +L QV Sbjct: 6 SDPTREAIALAYSQT-DAAPRVVAKGKGLIAEQIIARAKEHGVYVHESPELV-ALLTQVD 63 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 ++ IPP Y A+A+L+ +Y Sbjct: 64 LDEHIPPQLYIAIAELLAWLYR 85 >gi|310641524|ref|YP_003946282.1| flagellar protein fhlb-like protein [Paenibacillus polymyxa SC2] gi|309246474|gb|ADO56041.1| Flagellar protein FhlB-like protein [Paenibacillus polymyxa SC2] Length = 99 Score = 96.4 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++AP++VAKG IA + + A EH +P+ E+ +L L ++ ++ IP Sbjct: 15 AVALKYTPGESEAPIVVAKGSGRIADSILEKAKEHGVPVQEDAALVEVL-SKLDLDEQIP 73 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ IY Sbjct: 74 AELYQLVAEVLTYIYQM 90 >gi|289208366|ref|YP_003460432.1| type III secretion exporter [Thioalkalivibrio sp. K90mix] gi|288943997|gb|ADC71696.1| type III secretion exporter [Thioalkalivibrio sp. K90mix] Length = 119 Score = 96.4 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 253 RIRHKMMEATSRATIIITNPTH-YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311 + + + P A+AL + + AP + A G + A+++ +IA EH Sbjct: 1 MSKRRPPHEHDEPYVEPRGPRRPQAVALEWDR--QRAPRITASGSGVTAEQILRIAEEHG 58 Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 IP+ ++P L +L QVP+ +P Y AVA+++ I+ Sbjct: 59 IPLHQDPGLTEAL-AQVPLGEEVPESLYVAVAEVLAFIF 96 >gi|185177914|pdb|3C03|C Chain C, Crystal Structure Of The Escu C-Terminal Domain With P263a Mutation,Space Group P 1 21 1 Length = 83 Score = 96.4 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 44/74 (59%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 2 THIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQ 61 Query: 333 AIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 62 YITEDFFEPVAQLI 75 >gi|329929329|ref|ZP_08283082.1| putative FlhB domain protein [Paenibacillus sp. HGF5] gi|328936698|gb|EGG33141.1| putative FlhB domain protein [Paenibacillus sp. HGF5] Length = 104 Score = 96.0 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++APV+VAKGQ +A+ + A EH +P+ E+ +L + ++ ++ IP Sbjct: 17 AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVE-ILSKLDLDQQIP 75 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ +Y Sbjct: 76 EELYQLVAEVLTYVYR 91 >gi|322419281|ref|YP_004198504.1| type III secretion exporter [Geobacter sp. M18] gi|320125668|gb|ADW13228.1| type III secretion exporter [Geobacter sp. M18] Length = 94 Score = 96.0 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y E AP ++AKG + A+ + +A EH + + + P L ++ QV +++ IP Sbjct: 11 AVAMAYSPEEGSAPRVIAKGSGISAEAIISLAREHGVYVHQSPELV-AMLMQVDLDAEIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+AVA+L+ +Y Sbjct: 70 PELYQAVAELLAWLYSL 86 >gi|261408003|ref|YP_003244244.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] gi|261284466|gb|ACX66437.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10] Length = 104 Score = 96.0 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++APV+VAKGQ +A+ + A EH +P+ E+ +L + ++ ++ IP Sbjct: 17 AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVE-ILSKLDLDQQIP 75 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ +Y Sbjct: 76 EELYQLVAEVLTYVYR 91 >gi|185177901|pdb|3BZZ|B Chain B, Crystal Structural Of The Mutated R313t EscuSPAS C- Terminal Domain Length = 83 Score = 96.0 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LA SL+K + Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLATSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|209884850|ref|YP_002288707.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] gi|209873046|gb|ACI92842.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans OM5] Length = 91 Score = 96.0 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y + AP +VAKG+ IA+K+ ++A EH++ I E LA +L V I I Sbjct: 12 LAVALHYDRK--GAPRVVAKGKGEIARKIIEVAAEHDVAIEENEILAGAL-SNVEIGDEI 68 Query: 335 PPVFYKAVAQLIYKIYHK 352 P YKAVA+++ + Sbjct: 69 PAELYKAVAEVLIFVLRL 86 >gi|117926314|ref|YP_866931.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus sp. MC-1] gi|117610070|gb|ABK45525.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus sp. MC-1] Length = 100 Score = 96.0 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++ +P + A G+ +A+ + K A E ++P+ E+P L L +++P+ S +P Sbjct: 16 AVALRYRLGKDTSPRVTASGRGRLAETILKRAKEGDVPLLEDPDLVH-LLEKIPVGSEVP 74 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+AVA+++ IY Sbjct: 75 PQLYQAVAEVLAYIYR 90 >gi|258592464|emb|CBE68773.1| Cytoplasmic domain of flagellar protein FhlB-like protein protein [NC10 bacterium 'Dutch sediment'] Length = 104 Score = 96.0 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y EN AP +VA G+ IA+++ +A H I + ++P L L ++ I AIP Sbjct: 14 AVALKYEAGENGAPEVVASGRGRIAEQIIALAKAHGIYVKQDPELVEVL-SRLDIGDAIP 72 Query: 336 PVFYKAVAQLIYKIYH 351 P Y VA+++ +Y Sbjct: 73 PELYAVVAEILAFVYR 88 >gi|134095072|ref|YP_001100147.1| putative part of export apparatus for flagellar proteins (partial) [Herminiimonas arsenicoxydans] Length = 97 Score = 96.0 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y Q+ + AP +VAKG+ LIA+++ + A EH + I E L +L QV + Sbjct: 8 KPPPSAVALAY-QSGDSAPRIVAKGRGLIAEQIIERAKEHGVAIHESKELV-ALLLQVEL 65 Query: 331 NSAIPPVFYKAVAQLIYKIYH 351 + IPP Y+AVA+L+ +Y Sbjct: 66 DDNIPPALYRAVAELLAWLYR 86 >gi|302670908|ref|YP_003830868.1| FlhB domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395381|gb|ADL34286.1| FlhB domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 98 Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E+ AP ++A G+ +A K+ + A E+ IP+ E+ LA +L ++ I IP Sbjct: 13 AVALGYDPNEDGAPKVIASGKGALADKIIEQAKENKIPVHEDDKLADTL-SRLEIGEMIP 71 Query: 336 PVFYKAVAQLIYKI 349 P Y+ VA+++ + Sbjct: 72 PELYEVVAEVLVFV 85 >gi|304436819|ref|ZP_07396785.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370191|gb|EFM23850.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 103 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP Sbjct: 18 AVAIKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ +A+++ +Y Sbjct: 77 PELYRTIAEVLAHVYR 92 >gi|27380472|ref|NP_772001.1| hypothetical protein bsl5361 [Bradyrhizobium japonicum USDA 110] gi|27353636|dbj|BAC50626.1| bsl5361 [Bradyrhizobium japonicum USDA 110] Length = 87 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +++P+ A+AL Y + + APV+VAKG+ I +K+ +IA ++IPI E LA +L +V Sbjct: 1 MSDPSKLAIALHYEKG-SGAPVVVAKGKGTIGEKIVEIAKANDIPIEENEILAGAL-SKV 58 Query: 329 PINSAIPPVFYKAVAQLIYKIYHK 352 + IPP YKAVA+++ + Sbjct: 59 ELGEEIPPDLYKAVAEVLVFVLRL 82 >gi|332798509|ref|YP_004460008.1| type III secretion exporter [Tepidanaerobacter sp. Re1] gi|332696244|gb|AEE90701.1| type III secretion exporter [Tepidanaerobacter sp. Re1] Length = 101 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y E++AP ++A G+ +IA+K+ ++A EHNI I+++P+L +L Q+ + IP Sbjct: 13 ATALKYNSAEDNAPKIIASGKGIIAEKILELAQEHNIAIYKDPALVEALV-QLEVGQEIP 71 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ IY Sbjct: 72 LELYQAVAEILAFIY 86 >gi|77918709|ref|YP_356524.1| hypothetical protein Pcar_1105 [Pelobacter carbinolicus DSM 2380] gi|77544792|gb|ABA88354.1| putative cytoplasmic domain of flagellar protein [Pelobacter carbinolicus DSM 2380] Length = 90 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + APV+VA G+ +A+K+ A E + + +P L + +VP+ IP Sbjct: 10 AVALTYQKASGKAPVVVASGKGAVAEKILATAGEAGVEVVRDPDLVE-ILDKVPLGQEIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 Y+AVA+++ +Y Sbjct: 69 EELYQAVAEILAFVYR 84 >gi|300311379|ref|YP_003775471.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1] gi|300074164|gb|ADJ63563.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1] Length = 114 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y ++ AP +VAKG+ L+A+ + A E + + E L SL QV ++ Sbjct: 7 PLQNAVALAYNASQA-APQVVAKGRGLVAEAIIARARESGVYVHESKELV-SLLMQVELD 64 Query: 332 SAIPPVFYKAVAQLIYKIYH 351 IPP Y+ VA+L+ +Y Sbjct: 65 QQIPPALYRTVAELLAWLYR 84 >gi|94263289|ref|ZP_01287105.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] gi|94272298|ref|ZP_01292101.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] gi|93450174|gb|EAT01485.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] gi|93456372|gb|EAT06496.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1] Length = 96 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP LVAKG +A+K+ ++A EH +PI E+ L + ++ + IP Sbjct: 16 AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74 Query: 336 PVFYKAVAQLIYKIYH 351 P Y VA+++ IY Sbjct: 75 PETYLLVAEILAFIYR 90 >gi|296132572|ref|YP_003639819.1| type III secretion exporter [Thermincola sp. JR] gi|296031150|gb|ADG81918.1| type III secretion exporter [Thermincola potens JR] Length = 100 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y DAP +VA GQ L+A+ + ++A E+NIPI E+P L +L + + + IP Sbjct: 19 AVALEYKPGLQDAPQVVATGQGLVAENIVRLAKEYNIPIEEDPVLVDAL-RVLQLGEEIP 77 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+ VA+++ + Sbjct: 78 PELYRVVAEILVFVMDL 94 >gi|185177897|pdb|3BZX|B Chain B, Crystal Structure Of The Mutated H265a Escu C-Terminal Domain Length = 83 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PT A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL+K + Sbjct: 1 PTAIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|251797459|ref|YP_003012190.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] gi|247545085|gb|ACT02104.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2] Length = 101 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + APV+ AKG+ +A ++ + A EH++P+ ++ SL L ++ ++ +IP Sbjct: 17 AVALKYEPGAHKAPVVTAKGRGYLADQILEQAAEHHVPVQQDSSLVEVL-SKLDVDQSIP 75 Query: 336 PVFYKAVAQLIYKIYH 351 P Y VA+++ +Y Sbjct: 76 PELYTLVAEILSFVYR 91 >gi|253996297|ref|YP_003048361.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8] gi|253982976|gb|ACT47834.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8] Length = 119 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 2/83 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 NP A+AL Y T + AP +VAKG+ LIA+++ A +H++ + E L +L QV + Sbjct: 25 NPNQQAIALTY-ATGDYAPRVVAKGRGLIAEQIIARAKQHDVFVHESKDLV-ALLMQVDL 82 Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353 + IPP Y+A+A+++ +Y + Sbjct: 83 DDHIPPTLYQAIAEILSWLYRME 105 >gi|308173570|ref|YP_003920275.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens DSM 7] gi|307606434|emb|CBI42805.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens DSM 7] gi|328553497|gb|AEB23989.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens TA208] gi|328911711|gb|AEB63307.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens LL3] Length = 93 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + ++ AP ++A G+ +A+ + K A + +PI E+ +L L + + ++ IP Sbjct: 10 AVALHYDRQKDQAPKVIATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTVDDQIP 68 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA++ +Y Sbjct: 69 EALYETVAEIFSFVYRL 85 >gi|238926781|ref|ZP_04658541.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] gi|238885313|gb|EEQ48951.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC 43531] Length = 103 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP + AKG++L+A ++ A ++ IP+++ SL L + I+ IP Sbjct: 18 AVAVKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ +A+++ +Y Sbjct: 77 PELYRTIAEVLAHVYR 92 >gi|299135221|ref|ZP_07028412.1| type III secretion exporter [Afipia sp. 1NLS2] gi|298590198|gb|EFI50402.1| type III secretion exporter [Afipia sp. 1NLS2] Length = 91 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y + AP +VAKG+ IAKK+ ++A EH++ I E LA +L V I I Sbjct: 12 LAVALHYDRK--GAPRVVAKGKGEIAKKIIEVASEHDVAIQENEVLAGAL-SNVEIGDEI 68 Query: 335 PPVFYKAVAQLIYKIYHK 352 P Y+AVA+++ + Sbjct: 69 PAELYRAVAEVLVFVMRL 86 >gi|206603123|gb|EDZ39603.1| Probable flagellar biosynthesis protein [Leptospirillum sp. Group II '5-way CG'] Length = 100 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y ++DAPV++A GQ+ IA+K+ +IA E+ IP+ P LA L + VP I Sbjct: 10 IAIALGYHPEKDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAEFLIR-VPPGHPI 68 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA L+ +Y Sbjct: 69 PAELYQAVALLLAYLYR 85 >gi|302392093|ref|YP_003827913.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501] gi|302204170|gb|ADL12848.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501] Length = 96 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y +N+AP +VAKG N +AKK+ A E++IPI ++ +L ++L Q+ + I Sbjct: 14 AAALKYDPEQNNAPQVVAKGSNEVAKKIIAKAKENDIPIHQDDTLVKNLI-QLDLEEEIT 72 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ IY Sbjct: 73 GELYQIVAEVLSFIYQL 89 >gi|185177899|pdb|3BZY|B Chain B, Crystal Structure Of The Mutated Y316d Escu C-Terminal Domain Length = 83 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 44/75 (58%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+ L Y E P+++ G++ A ++ K+A ++IP+ E+ LARSL K + Sbjct: 1 PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKG 60 Query: 332 SAIPPVFYKAVAQLI 346 I F++ VAQLI Sbjct: 61 QYITEDFFEPVAQLI 75 >gi|295111515|emb|CBL28265.1| Flagellar biosynthesis pathway, component FlhB [Synergistetes bacterium SGP1] Length = 95 Score = 94.9 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +AP + A+G+ IA+K+ + A E ++P+ E+ +L +L + + IP Sbjct: 9 AVALKYDRETMNAPTVTARGEGFIARKIVERALEADVPVLEDAALVSALL-SLELGEEIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+++ +Y Sbjct: 68 AELYTVVARVLTWVYR 83 >gi|169831979|ref|YP_001717961.1| flagellar protein FhlB-like cytoplasmic domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638823|gb|ACA60329.1| flagellar protein FhlB-like cytoplasmic domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 117 Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + P +VA G+ L A ++ ++A +P++ +P LA +L + ++ I Sbjct: 18 VAAALTYEDGPDAVPRVVAVGKGLFAARIEEVARASGVPVYRDPQLAWTL-AGLGLDREI 76 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+ VAQ+I +Y+ + Sbjct: 77 PPELYQVVAQVIAWVYYLE 95 >gi|225849676|ref|YP_002729910.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] gi|225646306|gb|ACO04492.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1] Length = 92 Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + +NDAP +VAKGQ LIA+++ +IA E+ I I ++ L + + Q+ I IP Sbjct: 7 AVALRYDREKNDAPEVVAKGQGLIAERIVEIAREYGIEIKQDRELVQ-ILSQLDIKQEIP 65 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA+++ IY Sbjct: 66 PELYKAVAEILIFIYR 81 >gi|94267692|ref|ZP_01290961.1| FlhB domain protein [delta proteobacterium MLMS-1] gi|93451894|gb|EAT02625.1| FlhB domain protein [delta proteobacterium MLMS-1] Length = 96 Score = 94.1 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP LVAKG +A+K+ ++A EH +PI E+ L + ++ + IP Sbjct: 16 AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74 Query: 336 PVFYKAVAQLIYKIYH 351 P Y VA+++ IY Sbjct: 75 PETYLLVAEILAFIYR 90 >gi|57167848|ref|ZP_00366988.1| FlhB domain protein [Campylobacter coli RM2228] gi|305432127|ref|ZP_07401293.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20] gi|57020970|gb|EAL57634.1| FlhB domain protein [Campylobacter coli RM2228] gi|304444792|gb|EFM37439.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20] gi|315931143|gb|EFV10116.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 327] Length = 93 Score = 94.1 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L + ++ + IP Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQM 86 >gi|319649580|ref|ZP_08003736.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2] gi|317398742|gb|EFV79424.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2] Length = 98 Score = 94.1 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP + AKG+ L+A+ + A EH+IP+ E+P+L L ++ IN IP Sbjct: 12 AVALTYDPVNQGAPRISAKGKGLVAENILVKAKEHDIPVQEDPALVE-LLGKLNINEGIP 70 Query: 336 PVFYKAVAQLIYKIYH 351 Y+AVA++ IY Sbjct: 71 EELYQAVAEVFVFIYR 86 >gi|320354269|ref|YP_004195608.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032] gi|320122771|gb|ADW18317.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032] Length = 102 Score = 94.1 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + AP ++A G NLIA+K+ A E + I E+ L L ++P+ IP Sbjct: 11 AVALLYDQDKGTAPKVIASGSNLIAEKIIATAMEAGVHIREDKDLVE-LLAKIPLGQEIP 69 Query: 336 PVFYKAVAQLIYKIY 350 Y+ +A+++ +Y Sbjct: 70 VELYQTIAEVLAFVY 84 >gi|288553079|ref|YP_003425014.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4] gi|288544239|gb|ADC48122.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4] Length = 91 Score = 94.1 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + D+P ++AKG+ +IA+++ + A H+IPI E+ SL L Q+ IN IP Sbjct: 9 AVALRYDAAKQDSPEVIAKGKGIIAEEIIEKAKNHHIPIQEDASLVE-LLSQLNINQTIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ VA++ IY Sbjct: 68 PELYEVVAEVFAFIYR 83 >gi|311068129|ref|YP_003973052.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942] gi|310868646|gb|ADP32121.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942] Length = 93 Score = 93.7 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y + ++ AP ++A G+ IA+ + A + +PI E+ +L L + + + Sbjct: 5 TPLRKAVALHYDEQKDKAPKVIATGRGHIAENIIAEAKKAGVPIQEDRTLVE-LMRHLTV 63 Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352 + IP Y+ VA++ +Y Sbjct: 64 DDQIPEALYETVAEIFSFVYKL 85 >gi|224826964|ref|ZP_03700062.1| putative flagellar biosynthesis-related protein [Lutiella nitroferrum 2002] gi|224600797|gb|EEG06982.1| putative flagellar biosynthesis-related protein [Lutiella nitroferrum 2002] Length = 110 Score = 93.7 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q AP +VAKG +A+++ + A E + + + P+L SL QV ++ IP Sbjct: 13 AIALSY-QDGARAPKVVAKGYGELAERIIERAQEAGVFVHDSPALV-SLLMQVDLDQQIP 70 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ +Y Sbjct: 71 PELYRAVAEVLAFVY 85 >gi|308273541|emb|CBX30143.1| hypothetical protein N47_D29520 [uncultured Desulfobacterium sp.] Length = 92 Score = 93.7 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY+ AP ++A G+ +A+K+ ++A EHNI I +P L L Q+ + IP Sbjct: 10 AVALRYVPEREQAPRVIATGKGKLAEKIIQVAKEHNIHIHSDPDLVEML-SQLKPDQEIP 68 Query: 336 PVFYKAVAQLIYKIYHK 352 YK VA+++ +Y Sbjct: 69 SDLYKVVAEILVFVYSL 85 >gi|296330823|ref|ZP_06873298.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674341|ref|YP_003866013.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151828|gb|EFG92702.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412585|gb|ADM37704.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 93 Score = 93.7 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y + ++ AP ++A G+ +A + K A + +PI E+ +L L + + + Sbjct: 5 TPIRKAVALHYDEQKDKAPKVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTV 63 Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352 + IP Y+ VA++ IY Sbjct: 64 DDQIPEALYETVAEIFSFIYRL 85 >gi|153952619|ref|YP_001398106.1| FlhB domain-containing protein [Campylobacter jejuni subsp. doylei 269.97] gi|152940065|gb|ABS44806.1| FlhB domain protein [Campylobacter jejuni subsp. doylei 269.97] Length = 93 Score = 93.7 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L + ++ + IP Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQM 86 >gi|197118783|ref|YP_002139210.1| FlhB cytoplasmic domain-containing protein [Geobacter bemidjiensis Bem] gi|197088143|gb|ACH39414.1| uncharacterized FlhB cytoplasmic domain protein-like protein [Geobacter bemidjiensis Bem] Length = 100 Score = 93.7 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y E+ AP +VAKG + A+ + +A EH + + + P L SL QV ++S IP Sbjct: 11 AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+AVA+L+ +Y Sbjct: 69 PELYQAVAELLAWLYSL 85 >gi|114330763|ref|YP_746985.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas eutropha C91] gi|114307777|gb|ABI59020.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas eutropha C91] Length = 113 Score = 93.7 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP +VAKGQ LIA+++ + A E + + E L +L QV ++ IP Sbjct: 30 AVALTYHSG-MTAPQVVAKGQGLIAEEIIRRAQEAGVYVHESAELV-ALLMQVDLDEHIP 87 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y A+A+L+ +Y + Sbjct: 88 PELYVAIAELLAWLYQLE 105 >gi|57237689|ref|YP_178937.1| FlhB domain-containing protein [Campylobacter jejuni RM1221] gi|86150272|ref|ZP_01068499.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152177|ref|ZP_01070389.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153293|ref|ZP_01071497.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597543|ref|ZP_01100777.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121612445|ref|YP_001000532.1| FlhB domain-containing protein [Campylobacter jejuni subsp. jejuni 81-176] gi|148926549|ref|ZP_01810231.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp. jejuni CG8486] gi|157415115|ref|YP_001482371.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81116] gi|167005466|ref|ZP_02271224.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356346|ref|ZP_03223111.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562476|ref|YP_002344255.1| hypothetical protein Cj0848c [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283957164|ref|ZP_06374628.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 1336] gi|57166493|gb|AAW35272.1| FlhB domain protein [Campylobacter jejuni RM1221] gi|85839388|gb|EAQ56650.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840962|gb|EAQ58212.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843019|gb|EAQ60230.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249511|gb|EAQ72471.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88190135|gb|EAQ94110.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360182|emb|CAL34976.1| conserved hypothetical protein Cj0848c [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845243|gb|EDK22337.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp. jejuni CG8486] gi|157386079|gb|ABV52394.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345731|gb|EDZ32369.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp. jejuni CG8421] gi|283791340|gb|EFC30145.1| putative flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 1336] gi|284926093|gb|ADC28445.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307747756|gb|ADN91026.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni M1] gi|315058298|gb|ADT72627.1| cytoplasmic domain of flagellar protein FhlB-like protein [Campylobacter jejuni subsp. jejuni S3] gi|315926508|gb|EFV05890.1| flhB domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929380|gb|EFV08585.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 93 Score = 93.7 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A EH +PI E+ L + ++ + IP Sbjct: 11 AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQM 86 >gi|124516284|gb|EAY57792.1| probable flagellar biosynthesis protein [Leptospirillum rubarum] Length = 100 Score = 93.7 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y E+DAPV++A GQ+ IA+K+ +IA E+ IP+ P LA L + VP I Sbjct: 10 IAIALGYHPEEDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAELLIR-VPPGHPI 68 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA L+ +Y Sbjct: 69 PAELYQAVALLLAYLYR 85 >gi|16126150|ref|NP_420714.1| flhB-like protein [Caulobacter crescentus CB15] gi|221234921|ref|YP_002517357.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000] gi|13423358|gb|AAK23882.1| flhB-related protein [Caulobacter crescentus CB15] gi|220964093|gb|ACL95449.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000] Length = 87 Score = 93.3 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y E +AP +VA GQ I +K+ + A EH +PI E+P LA++L + I+ I Sbjct: 13 IAVALLY--EEPNAPKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQAL-STIEIDEEI 69 Query: 335 PPVFYKAVAQLIYKIYHK 352 P Y+AVA+++ + + Sbjct: 70 PEALYRAVAEVLSFLLKR 87 >gi|50954412|ref|YP_061700.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950894|gb|AAT88595.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str. CTCB07] Length = 295 Score = 93.3 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%) Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 AP +VAKG + +A ++R+ A +P+ ++ LAR+L + VP+ IP + VA ++ Sbjct: 209 SAPRVVAKGADFVATRIREEARSAGVPMVQDLPLARALHRDVPLGQPIPNEHFGQVAHVL 268 Query: 347 YKIYHKK 353 + + Sbjct: 269 AFVMMLR 275 >gi|167646750|ref|YP_001684413.1| flhB-like protein [Caulobacter sp. K31] gi|167349180|gb|ABZ71915.1| flhB-related protein [Caulobacter sp. K31] Length = 90 Score = 93.3 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALRY E +AP +VA G+ + K+ + A EH +PI E +LA++L + ++ I Sbjct: 12 IAVALRY--EEPNAPRVVATGRGWLGDKIIETAREHGVPIEENAALAQAL-STIELDEEI 68 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA+++ I Sbjct: 69 PEALYRAVAEILGFILR 85 >gi|315648157|ref|ZP_07901258.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] gi|315276803|gb|EFU40146.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453] Length = 103 Score = 93.3 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E++AP++VAKGQ +A+ + A EH +P+ E+ +L + ++ ++ IP Sbjct: 17 AVALKYTPGESEAPMVVAKGQGKLAESILDKAKEHGVPVQEDAALVE-ILSKLDLDQQIP 75 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+++ +Y Sbjct: 76 AELYQLVAEVLTYVYR 91 >gi|297584023|ref|YP_003699803.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10] gi|297142480|gb|ADH99237.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10] Length = 98 Score = 93.3 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y T + AP + AKG+ +A+++ A EH+IPI E+ SL L Q+ I+ IP Sbjct: 15 AVALGYEVTRDSAPTIKAKGKGYVAEEIISRAKEHDIPIQEDKSLVE-LLSQLEIHEKIP 73 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA++ IY Sbjct: 74 EDLYEVVAEVFAFIYR 89 >gi|225849513|ref|YP_002729678.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] gi|225644207|gb|ACN99257.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense Az-Fu1] Length = 87 Score = 93.3 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + ++ AP +VAKG+ IA+K+ ++A ++ + I E+ L L + + IP Sbjct: 8 AVALKYERYKDTAPKVVAKGKGEIAQKIIEVARQYGVYIKEDKDLVEVL-SGLDLYQEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 YK VA+L+ IY K Sbjct: 67 EDLYKVVAELLAFIYKTK 84 >gi|328544226|ref|YP_004304335.1| cytoplasmic domain of flagellar protein FhlB-like protein [polymorphum gilvum SL003B-26A1] gi|326413968|gb|ADZ71031.1| Cytoplasmic domain of flagellar protein FhlB-like protein [Polymorphum gilvum SL003B-26A1] Length = 105 Score = 93.3 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y + AP + AKG+ +A+++ + A H +PI +P LA +L Q+ I+ I Sbjct: 23 LAVALHYD--KAGAPTVTAKGRGAVARRIEETARAHGVPIEADPLLAEAL-AQIEIDQEI 79 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA LI I Sbjct: 80 PVELYQAVAVLIGFILR 96 >gi|226939559|ref|YP_002794632.1| flagellar biosynthesis-related protein [Laribacter hongkongensis HLHK9] gi|226714485|gb|ACO73623.1| probable flagellar biosynthesis-related protein [Laribacter hongkongensis HLHK9] Length = 114 Score = 93.3 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKGQ +A ++ + A + + + E P L +L QV ++S IP Sbjct: 11 AVALAYREGSV-APKVTAKGQGELALRIIERAQQAGVFVHESPQLV-NLLMQVDLDSQIP 68 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+++ +Y Sbjct: 69 PELYQAVAEVLAFVY 83 >gi|258511352|ref|YP_003184786.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478078|gb|ACV58397.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 85 Score = 93.3 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++ AP +VAKG +AK + + A H +P+ E+ L +LF + ++ IP Sbjct: 7 AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+AVA+++ IY + Sbjct: 66 PELYQAVAEILAYIYRFR 83 >gi|296135643|ref|YP_003642885.1| type III secretion exporter [Thiomonas intermedia K12] gi|295795765|gb|ADG30555.1| type III secretion exporter [Thiomonas intermedia K12] Length = 108 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY AP +VAKGQ L+A+ + A E + + E P L + L V +++ IP Sbjct: 18 AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ ++ + Sbjct: 77 PALYTAVAELLAWLWRLE 94 >gi|114566998|ref|YP_754152.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337933|gb|ABI68781.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 89 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY +++ PV+VAKGQ IA+K++K+A E +PI E+ LA L + + IP Sbjct: 9 AVALRYDMEKDEVPVVVAKGQGFIAEKIKKVARESGVPIKEDRELADYLMA-LDLYEEIP 67 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y VA+++ IY Sbjct: 68 PELYAVVAEILAFIYRM 84 >gi|95929897|ref|ZP_01312638.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas acetoxidans DSM 684] gi|95134193|gb|EAT15851.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas acetoxidans DSM 684] Length = 92 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 + +P A+A++Y + DAP++VA G+ +A+ + + A + + I +P L L + Sbjct: 1 MSDDPVKKAVAVKYDKEVADAPLIVASGKGQLAENIIQAAEKAGLEISHDPDLVE-LLAK 59 Query: 328 VPINSAIPPVFYKAVAQLIYKIYH 351 +P+ S IP Y+AVA+++ +Y Sbjct: 60 IPVGSEIPSELYQAVAEILAYVYR 83 >gi|218288274|ref|ZP_03492573.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius LAA1] gi|218241633|gb|EED08806.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius LAA1] Length = 85 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++ AP +VAKG +AK + + A H +P+ E+ L +LF + ++ IP Sbjct: 7 AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+AVA+++ IY + Sbjct: 66 PELYQAVAEILAYIYRFR 83 >gi|188586969|ref|YP_001918514.1| flagellar biosynthesis protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351656|gb|ACB85926.1| flagellar biosynthesis protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 96 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 268 IITNPTHY--ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 + P H+ A AL+Y Q +N AP L+A GQ L+A ++ + A E I I+++P LA +L Sbjct: 1 MARKPKHFKRAAALKYDQDKNQAPQLIAAGQGLVADEIIRRAEEEGIYIYQDPELANTL- 59 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYH 351 Q+ + IP Y+ VA+++ I Sbjct: 60 SQLSLYQEIPEELYQGVAEVLAFIQR 85 >gi|16078671|ref|NP_389490.1| flagellar biosynthesis protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309483|ref|ZP_03591330.1| hypothetical protein Bsubs1_08861 [Bacillus subtilis subsp. subtilis str. 168] gi|221313808|ref|ZP_03595613.1| hypothetical protein BsubsN3_08797 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318732|ref|ZP_03600026.1| hypothetical protein BsubsJ_08731 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323003|ref|ZP_03604297.1| hypothetical protein BsubsS_08837 [Bacillus subtilis subsp. subtilis str. SMY] gi|321315374|ref|YP_004207661.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5] gi|81342418|sp|O34867|YLQH_BACSU RecName: Full=Uncharacterized protein ylqH gi|2462966|emb|CAA04418.1| YlqH protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633980|emb|CAB13481.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp. subtilis str. 168] gi|291484159|dbj|BAI85234.1| hypothetical protein BSNT_02627 [Bacillus subtilis subsp. natto BEST195] gi|320021648|gb|ADV96634.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5] Length = 93 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y + ++ AP ++A G+ +A + K A + +PI E+ +L L + + + Sbjct: 5 TPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTV 63 Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352 + IP Y+ VA++ IY Sbjct: 64 DDQIPEALYETVAEIFSFIYKL 85 >gi|118474492|ref|YP_892339.1| FlhB domain-containing protein [Campylobacter fetus subsp. fetus 82-40] gi|118413718|gb|ABK82138.1| FlhB domain protein [Campylobacter fetus subsp. fetus 82-40] Length = 87 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + ++AP ++A G+ +A K+ + A +H IPI E+ L + ++ IN IP Sbjct: 7 AVALGYNKKRDNAPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVE-ILSKIDINQEIP 65 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ +Y Sbjct: 66 PNLYKAVAEVFSFLYR 81 >gi|114777940|ref|ZP_01452854.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1] gi|114551727|gb|EAU54279.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1] Length = 95 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 ++ H A+AL + + AP + AKG +A ++ ++A E+NIPI E+ L + +F Q+ Sbjct: 1 MSERKHQAIALNWDPYLDAAPKITAKGSGQLADEIIRLARENNIPIREDRDLVQ-IFSQL 59 Query: 329 PINSAIPPVFYKAVAQLIYKIY 350 I +++PP + A+A+++ IY Sbjct: 60 DIGASVPPEVHTAIAEILAFIY 81 >gi|311695179|gb|ADP98052.1| flagellar protein FhlB cytoplasmic domain protein [marine bacterium HP15] Length = 104 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP + A G + +A+++ +IA EHN+P++E LA S+ ++ +N IP Sbjct: 12 AVALKYDGEK--APTISATGTHELAEEIIRIAREHNVPLYENAELA-SILARLSLNEEIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A+++ +H + Sbjct: 69 ESLYRVIAEILAFAFHIR 86 >gi|317129223|ref|YP_004095505.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] gi|315474171|gb|ADU30774.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] Length = 100 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++E++APV+ AKG+ +A ++ K A E+NIPI E+ SL + Q+ +N IP Sbjct: 16 AVALGYNRSEDEAPVVKAKGKGYVADEIIKRARENNIPIQEDSSLVE-ILSQLEMNERIP 74 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA++ +Y Sbjct: 75 TALYGVVAEVFSFVYR 90 >gi|258515578|ref|YP_003191800.1| hypothetical protein Dtox_2366 [Desulfotomaculum acetoxidans DSM 771] gi|257779283|gb|ACV63177.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM 771] Length = 104 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALR+ ++ APV+VA G+ IA+ ++K+A E +IPI ++P LA++L + N IP Sbjct: 23 ASALRFDPNKDQAPVVVATGKGDIARSIKKMAGELHIPIVKDPVLAQTLH-TLGTNIEIP 81 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+++ +Y Sbjct: 82 EHLYEAVAKVLAYVY 96 >gi|289547861|ref|YP_003472849.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484] gi|289181478|gb|ADC88722.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484] Length = 87 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY Q ++ APV+VAKG +A+K+ ++A E+ +P+ E+P L +L V + IP Sbjct: 6 AVALRYHQEKDRAPVVVAKGMGDVAEKILQLAKEYGVPVVEDPQLVTALMG-VELLEEIP 64 Query: 336 PVFYKAVAQLIYKI 349 P Y+AVAQ++ + Sbjct: 65 PRLYRAVAQILLFV 78 >gi|327441069|dbj|BAK17434.1| uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Solibacillus silvestris StLB046] Length = 97 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ P +VAKG+ IA+ + + A H +P++E+P+L L Q+ +N++IP Sbjct: 11 AIALSYDPQKSSGPTIVAKGKGKIAENILEKAAMHEVPVYEDPNLVE-LLGQLDLNTSIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA++ IYH Sbjct: 70 EELYQAVAEVFAFIYHL 86 >gi|118581817|ref|YP_903067.1| FlhB domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504527|gb|ABL01010.1| FlhB domain protein [Pelobacter propionicus DSM 2379] Length = 108 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A A+ Y Q APV+VA+G+ ++A+ + A E + I E P L + L QV + IP Sbjct: 11 AAAISYKQGYY-APVVVARGKGVMAEAIIACAREAGVYIHESPELVQ-LLMQVDTDQFIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+AVA+++ +Y + Sbjct: 69 PELYRAVAEVLVWLYRME 86 >gi|82702472|ref|YP_412038.1| flagellar biosynthetic protein-like protein [Nitrosospira multiformis ATCC 25196] gi|82410537|gb|ABB74646.1| flagellar biosynthetic protein-like protein [Nitrosospira multiformis ATCC 25196] Length = 101 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +T + AP +VAKG+ L+A+ + + A H + + E P L SL QV ++ IP Sbjct: 10 AVALAY-RTGDHAPQVVAKGRGLVAENIIREARRHGVFVHESPELV-SLLIQVDLDQHIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+AVA+L+ +Y + Sbjct: 68 PQLYRAVAELLVWLYKME 85 >gi|294339812|emb|CAZ88175.1| putative Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Thiomonas sp. 3As] Length = 108 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY AP +VAKGQ L+A+ + A E + + E P L + L V +++ IP Sbjct: 18 AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ ++ + Sbjct: 77 PALYTAVAELLAWLWRLE 94 >gi|52080210|ref|YP_079001.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580] gi|52785587|ref|YP_091416.1| YlqH [Bacillus licheniformis ATCC 14580] gi|319646011|ref|ZP_08000241.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2] gi|52003421|gb|AAU23363.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580] gi|52348089|gb|AAU40723.1| YlqH [Bacillus licheniformis ATCC 14580] gi|317391761|gb|EFV72558.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2] Length = 93 Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y + ++ AP +VAKG A+K+ + A + +PI E+ +L L + + ++ Sbjct: 6 PLRRAVALHYDEMKDKAPKVVAKGSGYTAEKIIEEAQKAGVPIQEDATLVE-LMRHLELD 64 Query: 332 SAIPPVFYKAVAQLIYKIYHK 352 IP Y+ VA++ +Y Sbjct: 65 DHIPEALYEIVAEIFSFVYTL 85 >gi|253700436|ref|YP_003021625.1| cytoplasmic domain of flagellar protein FhlB-like protein [Geobacter sp. M21] gi|251775286|gb|ACT17867.1| cytoplasmic domain of flagellar protein FhlB-like protein [Geobacter sp. M21] Length = 92 Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y E+ AP +VAKG + A+ + +A EH + + + P L SL QV ++S IP Sbjct: 11 AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+AVA+L+ +Y Sbjct: 69 PELYQAVAELLAWLYSL 85 >gi|254517031|ref|ZP_05129089.1| FlhB domain protein [gamma proteobacterium NOR5-3] gi|219674536|gb|EED30904.1| FlhB domain protein [gamma proteobacterium NOR5-3] Length = 96 Score = 92.6 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 TH A AL Y AP+LVAKG+N IA ++ ++A E+ +PI ++ L L Q+P+ Sbjct: 13 THSA-ALSYSGE--GAPLLVAKGENAIADRIVELAAENGVPIVQDAQLTE-LLCQIPLGD 68 Query: 333 AIPPVFYKAVAQLIYKIYHK 352 +PP Y AVA+++ +Y Sbjct: 69 EVPPALYVAVAEVLAYVYRL 88 >gi|253573505|ref|ZP_04850848.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847033|gb|EES75038.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 101 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +APV+VAKG+ LIA ++ A EH IPI E+ +L L ++ ++ IP Sbjct: 15 AVALKYDPGQGEAPVVVAKGKGLIADRILDAALEHGIPIQEDAALVEVL-SKLDLDQQIP 73 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+++ IY Sbjct: 74 AELYDLVAEILTFIYR 89 >gi|91776332|ref|YP_546088.1| putative flagellar biosynthetic protein [Methylobacillus flagellatus KT] gi|91710319|gb|ABE50247.1| putative flagellar biosynthetic protein [Methylobacillus flagellatus KT] Length = 102 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG+ +IA+++ A EH + + E L +L QV ++ IP Sbjct: 10 AIALAYESG-DFAPRVVAKGRGVIAEQIIAKAKEHGVFVHESREL-LALLMQVDLDDHIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+A+A+++ +Y + Sbjct: 68 PALYQAIAEILAWLYRLE 85 >gi|194014522|ref|ZP_03053139.1| FlhB domain protein [Bacillus pumilus ATCC 7061] gi|194013548|gb|EDW23113.1| FlhB domain protein [Bacillus pumilus ATCC 7061] Length = 91 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 + P A+AL Y + + AP +VA G +A + + A + +PI E+ +L L + + Sbjct: 4 SKPLRRAVALHYDEEKQKAPKVVATGSGYVADHIIEEAKKSGVPIQEDRNLVE-LMRHLT 62 Query: 330 INSAIPPVFYKAVAQLIYKIYHK 352 ++ IP Y VA++ IY Sbjct: 63 LDEEIPEALYDTVAEIFSFIYRL 85 >gi|222823585|ref|YP_002575159.1| flagellar biosynthesis protein [Campylobacter lari RM2100] gi|222538807|gb|ACM63908.1| conserved hypothetical protein, possible flagellar biosynthesis protein [Campylobacter lari RM2100] Length = 96 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + T A+AL Y + + +AP ++A + A K+ +A E+ IPI E+ L L ++ Sbjct: 1 MAKKTKKAVALGYNKEDQNAPKILANAKGENAAKIISLAKENGIPIKEDKDLVEVL-SKL 59 Query: 329 PINSAIPPVFYKAVAQLIYKIYH 351 + IPP YKAVA++ +Y Sbjct: 60 DLGDEIPPNMYKAVAEIFAFLYK 82 >gi|148264415|ref|YP_001231121.1| flagellar protein FhlB-like protein [Geobacter uraniireducens Rf4] gi|146397915|gb|ABQ26548.1| cytoplasmic domain of flagellar protein FhlB-like protein [Geobacter uraniireducens Rf4] Length = 94 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y + AP ++AKG + A+ + +A E+ + + E P L +L QV + IP Sbjct: 11 AVAMAYDPG-DYAPRVIAKGCGVTAEAIIALARENGVYVHESPDLM-NLLLQVDQDRFIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+AVA+L+ +Y + Sbjct: 69 PELYRAVAELLAWLYRLE 86 >gi|163856461|ref|YP_001630759.1| hypothetical protein Bpet2150 [Bordetella petrii DSM 12804] gi|163260189|emb|CAP42491.1| hypothetical protein predicted by Glimmer/Critica [Bordetella petrii] Length = 104 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG IA + + A EH + + E L SL QV +++ IP Sbjct: 16 AVALSYG-EHDTAPRVVAKGYGQIADTIVRTAREHGLYVHESRELV-SLLMQVDLDAHIP 73 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 74 PQLYAAVAELLAWLYRLE 91 >gi|224370762|ref|YP_002604926.1| FlhB1 [Desulfobacterium autotrophicum HRM2] gi|223693479|gb|ACN16762.1| FlhB1 [Desulfobacterium autotrophicum HRM2] Length = 88 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +P + AKG ++A+K+ IA +H++P+ ++P L L + IN IP Sbjct: 6 AVALKYDRAAGSSPKVTAKGSGIVAQKIIDIAEQHDVPVKKDPDLVEVL-AGLDINQEIP 64 Query: 336 PVFYKAVAQLIYKIY 350 Y AVA+L+ +Y Sbjct: 65 QEIYVAVAELLAFVY 79 >gi|293605030|ref|ZP_06687424.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC 43553] gi|292816579|gb|EFF75666.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC 43553] Length = 105 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP Sbjct: 19 AVAISYD-DKDGAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 76 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 77 PQLYVAVAELLAWLYRLE 94 >gi|283954420|ref|ZP_06371940.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414] gi|283794037|gb|EFC32786.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414] Length = 93 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N AP ++A G+ A K+ +A E+ +PI E+ L + ++ + IP Sbjct: 11 AVALGYQREKNSAPKVLASGKGESAAKIISLAKEYGVPIKEDEDLIE-ILSKLDLGDEIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 P YKAVA++ IY Sbjct: 70 PNMYKAVAEVFAFIYQM 86 >gi|195953347|ref|YP_002121637.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932959|gb|ACG57659.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 87 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + +++AP LVAKG+ IA+K+ + A EH +P+ ++ L + + + I IP Sbjct: 8 AIALKYERGKDNAPRLVAKGKGYIAQKIIEFAKEHQVPVIQDEKLLSAAY-NLDIYEEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 P YKAVA+++ + K Sbjct: 67 PELYKAVAKVLVFVEKLK 84 >gi|268678710|ref|YP_003303141.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM 6946] gi|268616741|gb|ACZ11106.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM 6946] Length = 92 Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T+ T A+AL+Y + + AP +VA G+ +A + K+A EH+I I ++ L L ++ Sbjct: 5 TSKTQKAVALKYDREKQGAPKVVASGKGEVANNIIKLAQEHDIFIKKDADLVE-LLSKIE 63 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 IN IPP+ YKAVA++ IY Sbjct: 64 INKEIPPMLYKAVAEVFSFIYK 85 >gi|52842789|ref|YP_096588.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629900|gb|AAU28641.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 112 Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N I Sbjct: 31 VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEI 87 Query: 335 PPVFYKAVAQLIYKIY 350 P Y AVAQ++ +Y Sbjct: 88 PKALYIAVAQILAFLY 103 >gi|223039449|ref|ZP_03609737.1| FlhB domain protein [Campylobacter rectus RM3267] gi|222879245|gb|EEF14338.1| FlhB domain protein [Campylobacter rectus RM3267] Length = 89 Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y + +++AP ++A G +AK + +A H+IPI E+ L + +V +N Sbjct: 7 TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLVE-ILSKVDLNE 65 Query: 333 AIPPVFYKAVAQLIYKIYHK 352 +PP YKAVA++ +Y Sbjct: 66 EVPPNLYKAVAEIFNFLYRM 85 >gi|157692287|ref|YP_001486749.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] gi|157681045|gb|ABV62189.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032] Length = 91 Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 + P A+AL Y + + AP +VA G +A + + A + +PI E+ +L L + + Sbjct: 4 SKPLRRAVALHYDEEKQKAPKVVATGSGYVADNIIEEAKKSGVPIQEDRNLVE-LMRHLT 62 Query: 330 INSAIPPVFYKAVAQLIYKIYHK 352 ++ IP Y VA++ IY Sbjct: 63 LDEEIPEALYDTVAEIFSFIYRL 85 >gi|83589852|ref|YP_429861.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073] gi|83572766|gb|ABC19318.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073] Length = 94 Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E+ AP +VA G+ IA K+ A E +PI + LA L + + S IP Sbjct: 10 AVALRYNSEEDKAPRVVASGRGAIADKIITAAREAGVPIHRDTHLAEML-AGLDVGSEIP 68 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ IY Sbjct: 69 VELYQMVAEILVFIYSL 85 >gi|242309108|ref|ZP_04808263.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT 98-5489] gi|239524149|gb|EEQ64015.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT 98-5489] Length = 92 Score = 91.8 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+ +L SL + I Sbjct: 4 PPPQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIH-LEI 62 Query: 331 NSAIPPVFYKAVAQLIYKIYH 351 + IPP YKAV ++ +Y Sbjct: 63 DEEIPPELYKAVVEVFIWLYK 83 >gi|89098659|ref|ZP_01171541.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911] gi|89086621|gb|EAR65740.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911] Length = 99 Score = 91.4 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +AP + AKG+ L A+ + + A EHNIPI E+ SL L ++ I+ IP Sbjct: 12 AVALSY-RDGQEAPKVKAKGKGLTAENILEKAKEHNIPIQEDASLVE-LLGKLNIDENIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 Y+AVA++ +Y Sbjct: 70 EELYQAVAEIFAFVYK 85 >gi|295689582|ref|YP_003593275.1| type III secretion exporter [Caulobacter segnis ATCC 21756] gi|295431485|gb|ADG10657.1| type III secretion exporter [Caulobacter segnis ATCC 21756] Length = 87 Score = 91.4 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL + + AP ++A GQ + +K+ + A EH +PI E+P LA++L + I+ I Sbjct: 13 IAVALLHD--DASAPRVLASGQGWVGEKIIETAREHGVPIEEDPVLAQAL-STIEIDEEI 69 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA+++ + Sbjct: 70 PDALYRAVAEVLGFLLQ 86 >gi|255322604|ref|ZP_05363749.1| FlhB domain protein [Campylobacter showae RM3277] gi|255300512|gb|EET79784.1| FlhB domain protein [Campylobacter showae RM3277] Length = 89 Score = 91.4 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y + +++AP ++A G +AK + +A H+IPI E+ L L +V +N Sbjct: 7 TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLIEVL-SKVDLNE 65 Query: 333 AIPPVFYKAVAQLIYKIYHK 352 +PP YKAVA++ +Y Sbjct: 66 EVPPNLYKAVAEIFNFLYQM 85 >gi|147676798|ref|YP_001211013.1| flagellar protein FhlB cytoplasmic domain-containing protein [Pelotomaculum thermopropionicum SI] gi|146272895|dbj|BAF58644.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Pelotomaculum thermopropionicum SI] Length = 95 Score = 91.0 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 31/75 (41%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A ALRY +N APV+VA G+ L AKK+++IA + +P++++ +LAR+L + I I Sbjct: 8 VAAALRYEAGKNGAPVVVAAGRGLKAKKIKEIAEQAGVPVYQDEALARTLH-DLGIGVEI 66 Query: 335 PPVFYKAVAQLIYKI 349 PP Y+AVA+++ + Sbjct: 67 PPRLYQAVARILVFV 81 >gi|307946460|ref|ZP_07661795.1| type III secretion protein [Roseibium sp. TrichSKD4] gi|307770124|gb|EFO29350.1| type III secretion protein [Roseibium sp. TrichSKD4] Length = 99 Score = 91.0 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALRY AP + AKG +A ++ +IA E +PI ++P +A +L Q+ I+ I Sbjct: 15 VAVALRYDNE--GAPTVTAKGTGSVADRIEEIARESGVPIEQDPMMAEAL-SQIDIDEEI 71 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA LI + Sbjct: 72 PIELYQAVAVLIGFVMR 88 >gi|327441037|dbj|BAK17402.1| flagellar biosynthesis pathway, component FlhB [Solibacillus silvestris StLB046] Length = 155 Score = 91.0 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 56/133 (42%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 KTE + KK +D+ +G S++ + +L +LLFF + L L Sbjct: 16 GEKTEKATPKKRQDSRKKGQVLKSQDVTAAVLLLLSFFFLLFFAPFMYEGMKDFLLQALN 75 Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + ++ + + +V+P +++ ++ GIG+ Q + +K Sbjct: 76 RNMLIETLNAETVMDMYVESIKEMAIIVLPIMVIAIIAGIGANFFQFGLLFTTETLKIDL 135 Query: 128 KRVSLREGIKRIY 140 K+ +G KR++ Sbjct: 136 KKWIRLKGSKRLF 148 >gi|261885341|ref|ZP_06009380.1| FlhB domain-containing protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 87 Score = 91.0 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +++P ++A G+ +A K+ + A +H IPI E+ L + ++ IN IP Sbjct: 7 AVALGYNKKRDNSPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVE-ILSKIDINQEIP 65 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAVA++ +Y Sbjct: 66 PNLYKAVAEVFSFLYR 81 >gi|78485097|ref|YP_391022.1| flagellar protein FhlB-like protein [Thiomicrospira crunogena XCL-2] gi|78363383|gb|ABB41348.1| FlhB domain protein [Thiomicrospira crunogena XCL-2] Length = 104 Score = 91.0 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +A+ AP + AKG +A+++ K+A E+NIPI E+ L + L QV ++ IP Sbjct: 14 VAITLEYDGESAPKVTAKGSGTLAEQIIKVAKENNIPITEDHDLVQ-LLAQVELDQEIPE 72 Query: 337 VFYKAVAQLIYKIYHK 352 + Y+AV Q++ Y Sbjct: 73 LLYEAVVQVLIFAYQL 88 >gi|205373357|ref|ZP_03226161.1| flagellar biosynthesis protein [Bacillus coahuilensis m4-4] Length = 94 Score = 91.0 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY DAP L+AKG+ L+A+++ + A E+ I + E+P+L L Q+ +N IP Sbjct: 9 AIALRYDDMSMDAPKLIAKGKGLVAEQIIEKAKENGIQVQEDPNLVEML-SQLNMNETIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA++ +Y Sbjct: 68 AELYEVVAEVFAYVYK 83 >gi|326204817|ref|ZP_08194671.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782] gi|325985029|gb|EGD45871.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782] Length = 98 Score = 91.0 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP +VA G+ IA+++ + A E+N+P++++ +LA++L + I IP Sbjct: 13 AAALQYSPDSDAAPRIVAAGKGQIAERIIQKAQENNVPLYQDTNLAQTL-SSLSIGDEIP 71 Query: 336 PVFYKAVAQLIYKI 349 P Y+ VA+++ I Sbjct: 72 PEIYEVVAEILIFI 85 >gi|168698715|ref|ZP_02730992.1| FlhB domain protein [Gemmata obscuriglobus UQM 2246] Length = 89 Score = 90.6 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ AP +VAKG+ A+++ +A ++ +P+ E+P+L + L ++ ++ IP Sbjct: 9 AVALSYDPAKDRAPKVVAKGKGRTAEQILALARKNAVPVREDPTLVQVL-SRLKVDQEIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+AVA ++ + Sbjct: 68 PEVYRAVALILAFLNR 83 >gi|157363588|ref|YP_001470355.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] gi|157314192|gb|ABV33291.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO] Length = 83 Score = 90.6 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y DAP ++AKG+ IA+++ K A E +P+ P L R L++ + + I Sbjct: 7 LAVALGYDPDVFDAPFVIAKGKEEIAERIIKQALEAKVPVVSSPELVRKLYR-LEVLEEI 65 Query: 335 PPVFYKAVAQLIYKIYHK 352 P Y AVA+++ + + Sbjct: 66 PDDLYFAVAEILVFVQNL 83 >gi|304311129|ref|YP_003810727.1| Probably flagellar biosynthesis-related protein [gamma proteobacterium HdN1] gi|301796862|emb|CBL45074.1| Probably flagellar biosynthesis-related protein [gamma proteobacterium HdN1] Length = 113 Score = 90.6 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + A G N +A+ + +IA EH +PI+E L ++ ++ I IP Sbjct: 13 AVALTYD--GSRAPFISASGDNELAETILRIAREHGVPIYENKDLV-NILSRLEIGEEIP 69 Query: 336 PVFYKAVAQLIYKIYHKK 353 + Y+ +A++I +Y K Sbjct: 70 ELLYRTIAEIIAFVYMLK 87 >gi|54295419|ref|YP_127834.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens] gi|53755251|emb|CAH16745.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens] Length = 88 Score = 90.6 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N I Sbjct: 7 VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVDLNEEI 63 Query: 335 PPVFYKAVAQLIYKIY 350 P Y AVAQ++ +Y Sbjct: 64 PKALYIAVAQILAFLY 79 >gi|310658875|ref|YP_003936596.1| hypothetical protein CLOST_1571 [Clostridium sticklandii DSM 519] gi|308825653|emb|CBH21691.1| conserved protein of unknown function [Clostridium sticklandii] Length = 92 Score = 90.6 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E AP +V KGQ +AK++ + A E++IP++++ LA L + I+S IP Sbjct: 11 AVALRYDMNEFIAPKIVGKGQGEVAKRIIEKAKENDIPVYQDEKLAGQL-SAMEIDSFIP 69 Query: 336 PVFYKAVAQLIYKI 349 Y+AVAQ++ I Sbjct: 70 EELYEAVAQILAFI 83 >gi|218778848|ref|YP_002430166.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans AK-01] gi|218760232|gb|ACL02698.1| FlhB domain-containing protein [Desulfatibacillum alkenivorans AK-01] Length = 90 Score = 90.6 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++AP + A G+ +IA+K+ +A +H +P+ E+P L L ++ +N IP Sbjct: 8 AVALKYNALADNAPRVTATGKGIIAEKIIDLARKHGVPVQEDPDLVEVL-ARLDLNEEIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 Y VA+L+ +Y Sbjct: 67 AELYVVVAELLSFVYK 82 >gi|78224352|ref|YP_386099.1| FlhB domain-containing protein [Geobacter metallireducens GS-15] gi|78195607|gb|ABB33374.1| FlhB domain protein, putative [Geobacter metallireducens GS-15] Length = 94 Score = 90.6 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VAKG + A+ + A E + + E P+L L QV I+ IP Sbjct: 10 AVALSYREGQY-APQVVAKGHGVTAEAIIACAREAGVFVHESPALVSQLM-QVDIDHYIP 67 Query: 336 PVFYKAVAQLIYKIY 350 P Y+AVA+L+ +Y Sbjct: 68 PELYRAVAELLAWLY 82 >gi|291613084|ref|YP_003523241.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1] gi|291583196|gb|ADE10854.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1] Length = 113 Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL Y + + AP +VA G+ LIA+ + + A EH + + E L L QV ++ Sbjct: 11 QLAVALAY-RNGDAAPKVVASGRGLIAQAIIERAKEHGVYVHESEELVGMLM-QVELDQH 68 Query: 334 IPPVFYKAVAQLIYKIYHKK 353 IPP Y AVA+L+ +Y + Sbjct: 69 IPPQLYLAVAELLAWLYRLE 88 >gi|220928169|ref|YP_002505078.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10] gi|219998497|gb|ACL75098.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10] Length = 98 Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP +VA G+ IA+++ + A E N+P++++ +LA++L + I IP Sbjct: 13 AAALQYSPDTDSAPKIVAAGKGQIAERIIQKAQETNVPLYQDSNLAQTL-SSLCIGDEIP 71 Query: 336 PVFYKAVAQLIYKI 349 P Y+ VA+++ I Sbjct: 72 PEIYEVVAEILIFI 85 >gi|307826053|ref|ZP_07656266.1| type III secretion exporter [Methylobacter tundripaludum SV96] gi|307732892|gb|EFO03756.1| type III secretion exporter [Methylobacter tundripaludum SV96] Length = 94 Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL+Y +AP + AKG L A+++ +IA H IP+ EP LAR + Q+P+ I Sbjct: 10 IAIALKYDGK--NAPKVTAKGSGLTAEQILQIAELHGIPLQTEPELAR-ILAQIPLGDEI 66 Query: 335 PPVFYKAVAQLIYKIY 350 P Y AVA++I Y Sbjct: 67 PNELYVAVAEIIAFAY 82 >gi|39995477|ref|NP_951428.1| FlhB domain-containing protein [Geobacter sulfurreducens PCA] gi|39982240|gb|AAR33701.1| FlhB domain protein, putative [Geobacter sulfurreducens PCA] gi|298504477|gb|ADI83200.1| FlhB cytoplasmic domain-related protein [Geobacter sulfurreducens KN400] Length = 90 Score = 90.3 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VAKG + A+ + A E + + + P L R L QV I+S IP Sbjct: 10 AVALSY-REGHYAPQVVAKGYGVTAEAIIACAREAGVYVHQSPELVRQLI-QVDIDSCIP 67 Query: 336 PVFYKAVAQLIYKIY 350 Y+AVA+L+ +Y Sbjct: 68 ADLYRAVAELLAWLY 82 >gi|187478213|ref|YP_786237.1| flagellar biosynthesis protein [Bordetella avium 197N] gi|115422799|emb|CAJ49327.1| putative flagellar biosynthesis protein [Bordetella avium 197N] Length = 97 Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y + AP +VAKG +A+ + + A EH++ + E P L L QV ++S IP Sbjct: 12 AVAISYD-EADGAPRVVAKGYGQMAETIVRTAREHDLYVHESPELV-GLLMQVDLDSHIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 P Y AVA+L+ +Y Sbjct: 70 PALYTAVAELLAWLYR 85 >gi|146282896|ref|YP_001173049.1| FlhB domain-containing protein [Pseudomonas stutzeri A1501] gi|145571101|gb|ABP80207.1| FlhB domain protein [Pseudomonas stutzeri A1501] gi|327481236|gb|AEA84546.1| FlhB domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 110 Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +AP L AKG + +A+ + IA EH +PI+E L L ++ + IP Sbjct: 9 AIALSYD--GVNAPSLSAKGDDELAEAILAIAREHEVPIYENADLV-KLLARLELGDEIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I ++ K Sbjct: 66 EALYRTIAEIIAFAWYLK 83 >gi|15615036|ref|NP_243339.1| flagellar biosynthesis [Bacillus halodurans C-125] gi|10175093|dbj|BAB06192.1| flagellar biosynthesis [Bacillus halodurans C-125] Length = 92 Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+RY + + AP ++ KG+ L+A ++ K A E +PI ++PSL L Q+ IN IP Sbjct: 10 AVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVE-LLGQLEINETIP 68 Query: 336 PVFYKAVAQLIYKIYH 351 Y+ VA+L IY Sbjct: 69 EELYEVVAELFAFIYQ 84 >gi|167950811|ref|ZP_02537885.1| FlhB domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 94 Score = 89.9 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y ++AP L AKG+ +A+++ IA EHNIP+ ++ L+ +L Q+P+ I Sbjct: 11 LAIALNYD--GSNAPRLTAKGRGAVAEQILSIAKEHNIPLHQDTELS-ALLAQIPLGDEI 67 Query: 335 PPVFYKAVAQLIYKIY 350 P Y+AVA++I Y Sbjct: 68 PEALYRAVAEVIAFAY 83 >gi|70729068|ref|YP_258804.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68343367|gb|AAY90973.1| FlhB domain protein [Pseudomonas fluorescens Pf-5] Length = 109 Score = 89.9 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 + P A+AL+Y AP L AKG + +A+ + KIA ++ +PI+E L L ++ Sbjct: 4 SPPPRQAIALKYD--GQQAPTLTAKGDDELAEAILKIARDYEVPIYENAELV-KLLARLE 60 Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353 + +IPP Y+ +A++I ++ K Sbjct: 61 LGESIPPELYRTIAEIIAFAWNLK 84 >gi|34499326|ref|NP_903541.1| flagellar biosynthesis-like protein [Chromobacterium violaceum ATCC 12472] gi|34105177|gb|AAQ61533.1| probable flagellar biosynthesis-related protein [Chromobacterium violaceum ATCC 12472] Length = 112 Score = 89.9 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + +P +VAKG +A+++ A + + + + P L SL QV ++ IP Sbjct: 13 AVALSYKEGQ-RSPRVVAKGYGQMAQRIIDCAQDAGVFVHDSPELV-SLLMQVDLDKHIP 70 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+AVA+++ IY+ + Sbjct: 71 PELYRAVAEILAFIYYLE 88 >gi|312959804|ref|ZP_07774320.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] gi|311285970|gb|EFQ64535.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6] Length = 109 Score = 89.5 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T + A+AL+Y AP L AKG + +A+ + K+A E+ +PI+E L L ++ Sbjct: 4 TESSRQAIALKYD--GQQAPTLTAKGDDALAEAILKLARENEVPIYENAELV-KLLARME 60 Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353 + +IP Y+ +A++I + K Sbjct: 61 LGDSIPEELYRTIAEIIAFAWTLK 84 >gi|297530618|ref|YP_003671893.1| type III secretion exporter [Geobacillus sp. C56-T3] gi|297253870|gb|ADI27316.1| type III secretion exporter [Geobacillus sp. C56-T3] Length = 95 Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP++ AKG +A+ + A +H +PI ++P+L L +V IN IP Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINETIP 66 Query: 336 PVFYKAVAQLIYKIYHK 352 Y VA+L +Y Sbjct: 67 EELYALVAELFAFLYQL 83 >gi|89894622|ref|YP_518109.1| hypothetical protein DSY1876 [Desulfitobacterium hafniense Y51] gi|219669058|ref|YP_002459493.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2] gi|89334070|dbj|BAE83665.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539318|gb|ACL21057.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2] Length = 88 Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y Q+ AP +VAKG +A+K+ + A E+ IPI ++ L +L + V IP Sbjct: 5 AAALAYDQS--GAPKVVAKGTGEVARKIIEQAIEYGIPIQKDEVLVETLMR-VEYGEEIP 61 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+ VA+L+ +Y Sbjct: 62 PQLYQVVAELLAFVYRL 78 >gi|115525542|ref|YP_782453.1| type III secretion protein [Rhodopseudomonas palustris BisA53] gi|115519489|gb|ABJ07473.1| type III secretion protein [Rhodopseudomonas palustris BisA53] Length = 88 Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y Q AP++VAKG+ I K+ ++A H++PI E LA +L +V + I Sbjct: 9 LAIALHYDQ--LGAPLVVAKGKGAIGAKIIEVAKAHDVPIEENEVLAGAL-SKVELGEEI 65 Query: 335 PPVFYKAVAQLIYKIYHK 352 P YKAVA+++ + Sbjct: 66 PQELYKAVAEVLVFVLRL 83 >gi|325982832|ref|YP_004295234.1| type III secretion exporter [Nitrosomonas sp. AL212] gi|325532351|gb|ADZ27072.1| type III secretion exporter [Nitrosomonas sp. AL212] Length = 109 Score = 89.5 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP ++AKG+ LIA+++ + A E NI + E L +L QV ++ IP Sbjct: 10 AVALAYREGQI-APKVIAKGRGLIAQEIIRRAKEANIYVHESSELV-ALLMQVNLDDRIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 68 PQLYVAVAELLAWLYRLE 85 >gi|104782789|ref|YP_609287.1| hypothetical protein PSEEN3784 [Pseudomonas entomophila L48] gi|95111776|emb|CAK16500.1| conserved hypothetical protein; FlhB domain protein [Pseudomonas entomophila L48] Length = 114 Score = 89.5 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA EH +PI+E L R L ++ + IP Sbjct: 9 AIALSYD--GQQAPTLSAKGDDELAEAILAIAREHEVPIYENAELVR-LLARLELGEQIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A++I + + Sbjct: 66 EALYLTIAEIIAFAWQLR 83 >gi|54298571|ref|YP_124940.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris] gi|148358686|ref|YP_001249893.1| flagellar protein FlhB [Legionella pneumophila str. Corby] gi|296108224|ref|YP_003619925.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] gi|53752356|emb|CAH13788.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris] gi|148280459|gb|ABQ54547.1| flagellar protein FlhB [Legionella pneumophila str. Corby] gi|295650126|gb|ADG25973.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] Length = 88 Score = 89.1 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N I Sbjct: 7 VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEI 63 Query: 335 PPVFYKAVAQLIYKIY 350 P Y AVAQ++ +Y Sbjct: 64 PKALYIAVAQILAFLY 79 >gi|333008534|gb|EGK28003.1| surface presentation of antigens protein spaS domain protein [Shigella flexneri K-218] gi|333017441|gb|EGK36757.1| surface presentation of antigens protein spaS domain protein [Shigella flexneri K-227] gi|333020371|gb|EGK39635.1| surface presentation of antigens protein spaS domain protein [Shigella flexneri K-304] Length = 108 Score = 89.1 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 41/103 (39%) Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308 + + + + +++ NPTH A+ + + AP + N A +RK A Sbjct: 1 MHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYAN 60 Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 E IP + LAR L+K S + V +LI + Sbjct: 61 EVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 103 >gi|330960251|gb|EGH60511.1| FlhB domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 107 Score = 89.1 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 269 ITNPTH---YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +T P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L Sbjct: 1 MTPPDHSPRQAIALSYD--GQSAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|229589274|ref|YP_002871393.1| hypothetical protein PFLU1756 [Pseudomonas fluorescens SBW25] gi|229361140|emb|CAY48003.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 109 Score = 89.1 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A+AL+Y AP L A+G + +A+ + K+A E+ +PI+E L L ++ + Sbjct: 5 TPPRQAIALKYD--GQQAPTLTARGDDALAEAILKLARENEVPIYENAELV-KLLARMEL 61 Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353 +IP Y+ +A++I + K Sbjct: 62 GDSIPEELYRTIAEIIAFAWTLK 84 >gi|330808246|ref|YP_004352708.1| FlhB domain-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376354|gb|AEA67704.1| Conserved hypothetical protein, FlhB domain-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 109 Score = 89.1 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP L AKG +A+++ +IA E +PI+E L L ++ + +IP Sbjct: 10 AIALKYD--GHHAPTLTAKGDEALAEEILRIARESEVPIYENAELV-KLLARMELGDSIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I ++ K Sbjct: 67 EELYRTIAEIIAFAWNLK 84 >gi|74317614|ref|YP_315354.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259] gi|74057109|gb|AAZ97549.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259] Length = 124 Score = 89.1 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PT A A + + AP +VAKG+ ++A + + A + + E L +L Q+ ++ Sbjct: 32 PTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHESREL-LALLMQIDLD 90 Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353 S IPP Y AVA+L+ +YH + Sbjct: 91 SHIPPQLYIAVAELLAWLYHLE 112 >gi|325271963|ref|ZP_08138414.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51] gi|324102911|gb|EGC00307.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51] Length = 117 Score = 89.1 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + IA+ + +A EH +PI+E L R L ++ + IP Sbjct: 9 AIALSYD--GQQAPSLTAKGDDSIAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A++I + + Sbjct: 66 EALYLTIAEIIAFAWQLR 83 >gi|313200541|ref|YP_004039199.1| flagellar biosynthetic protein [Methylovorus sp. MP688] gi|312439857|gb|ADQ83963.1| putative flagellar biosynthetic protein [Methylovorus sp. MP688] Length = 101 Score = 89.1 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y + AP +VAKG+ L+A+++ A EH++ + E L SL Q+ ++ Sbjct: 11 TQQAIALAYETG-DFAPRVVAKGRGLVAEQIIARAREHDVFVHESKELV-SLLMQIDLDD 68 Query: 333 AIPPVFYKAVAQLIYKIYHKK 353 IPP Y A+A+++ +Y + Sbjct: 69 HIPPKLYMAIAEILAWLYRLE 89 >gi|187935380|ref|YP_001887350.1| flagella-associated protein [Clostridium botulinum B str. Eklund 17B] gi|188588297|ref|YP_001922288.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska E43] gi|251780672|ref|ZP_04823592.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187723533|gb|ACD24754.1| flagella-associated protein [Clostridium botulinum B str. Eklund 17B] gi|188498578|gb|ACD51714.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska E43] gi|243084987|gb|EES50877.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 86 Score = 89.1 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y +AP++ A G IA K+ + A E+ +PI LA +L V + IP Sbjct: 7 AAALKYELNNTEAPMIAASGMGHIADKIIEKAQENEVPIVYNKELA-NLLCNVDVGDEIP 65 Query: 336 PVFYKAVAQLIYKI 349 Y+AVA +I + Sbjct: 66 TELYEAVAHVIAFV 79 >gi|296273468|ref|YP_003656099.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299] gi|296097642|gb|ADG93592.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299] Length = 91 Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL+Y ++ AP +VAKG +A + KIA E+NIPI ++ L L ++ +N IP Sbjct: 12 ALKYNMQDDTAPRVVAKGIGELASNIIKIAKENNIPIKKDEDLVE-LLTKLDVNQQIPNN 70 Query: 338 FYKAVAQLIYKIYHK 352 YKAVA++ IY Sbjct: 71 LYKAVAEVFAFIYDL 85 >gi|163782344|ref|ZP_02177342.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1] gi|159882377|gb|EDP75883.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1] Length = 90 Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 50/74 (67%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+RY + ++ AP++VAKG +A+++ ++A + +P+ E+ L +L K + + IP Sbjct: 8 AVAIRYTEGKDRAPIVVAKGAGELAERIIELAKKEGVPVLEDRHLIEALLK-IEVFEEIP 66 Query: 336 PVFYKAVAQLIYKI 349 PV Y+AVA+++ + Sbjct: 67 PVLYEAVAKVLVFV 80 >gi|317406222|gb|EFV86468.1| flagellar protein [Achromobacter xylosoxidans C54] Length = 107 Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP Sbjct: 18 AVAISYD-DKDAAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 75 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 76 PQLYVAVAELLAWLYRLE 93 >gi|303241146|ref|ZP_07327654.1| type III secretion exporter [Acetivibrio cellulolyticus CD2] gi|302591273|gb|EFL61013.1| type III secretion exporter [Acetivibrio cellulolyticus CD2] Length = 98 Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL+Y N AP ++ G IA+K+ + A E++IPI++ LA +L I IPP Sbjct: 13 ALKYSPQSNRAPEIIGLGSGEIAEKIIEKAKENDIPIYKNDELASTL-SHFKIGDEIPPE 71 Query: 338 FYKAVAQLIYKI 349 Y+ VA+++ + Sbjct: 72 LYEVVAEILVFV 83 >gi|302387748|ref|YP_003823570.1| type III secretion exporter [Clostridium saccharolyticum WM1] gi|302198376|gb|ADL05947.1| type III secretion exporter [Clostridium saccharolyticum WM1] Length = 115 Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +N APV+VA G +A+K+ + A E+ +P++E+ SLA ++ Q+ + S +P Sbjct: 12 AVALKYDDAKNSAPVIVASGMGYMAEKIIETANENGVPVYEDNSLA-TILTQLELGSQVP 70 Query: 336 PVFYKAVAQLIYKIY 350 Y+A+ ++ +Y Sbjct: 71 EELYQAIVEI--YLY 83 >gi|307611462|emb|CBX01131.1| hypothetical protein LPW_28301 [Legionella pneumophila 130b] Length = 88 Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALRY N P + AKG+ L A+++ A EH IP+ + P L +L QV +N I Sbjct: 7 VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVHLNEEI 63 Query: 335 PPVFYKAVAQLIYKIY 350 P Y AVAQ++ +Y Sbjct: 64 PKALYIAVAQILAFLY 79 >gi|307721269|ref|YP_003892409.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979362|gb|ADN09397.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM 16294] Length = 85 Score = 89.1 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +N APV+ AKG+ A+K+ KIA EH +PI ++ L L +V +N +P Sbjct: 5 AVALTYDKEKNRAPVISAKGKGTTAQKIIKIAKEHGVPIKKDEDLIE-LLSKVELNKEVP 63 Query: 336 PVFYKAVAQLIYKIY 350 P YKA+A++ IY Sbjct: 64 PQMYKAIAEVFSFIY 78 >gi|254501917|ref|ZP_05114068.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11] gi|222437988|gb|EEE44667.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11] Length = 97 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 T P A+AL Y APV+ AKG AK++ +IA E +PI + P +A +L Q+ Sbjct: 5 TKPEKIAVALEYEDG--GAPVVSAKGTGSAAKRIEEIAREAGVPIEQNPMMAEAL-SQIE 61 Query: 330 INSAIPPVFYKAVAQLIYKIYH 351 ++ IP Y+AVA L+ I Sbjct: 62 VDHEIPMELYQAVAVLVGFIMR 83 >gi|224419116|ref|ZP_03657122.1| hypothetical protein HcanM9_07572 [Helicobacter canadensis MIT 98-5491] gi|253828052|ref|ZP_04870937.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142623|ref|ZP_07804816.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT 98-5491] gi|253511458|gb|EES90117.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131654|gb|EFR49271.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT 98-5491] Length = 93 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+ +L SL + I+ IP Sbjct: 9 AVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIH-LEIDEEIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAV ++ +Y Sbjct: 68 PDLYKAVVEVFIWLYK 83 >gi|154250425|ref|YP_001411250.1| flagellar biosynthetic protein (FlhB)-like protein [Fervidobacterium nodosum Rt17-B1] gi|154154361|gb|ABS61593.1| flagellar biosynthetic protein (FlhB)-like protein [Fervidobacterium nodosum Rt17-B1] Length = 96 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL+Y ++ AP +VAKG+ +A+ + K A E N+PI + P L LF+ + I I Sbjct: 17 LAVALKYQMGKDFAPFVVAKGRCQLAEAIIKKAEESNVPIVKSPDLVEELFR-LDILEMI 75 Query: 335 PPVFYKAVAQLIYKI 349 P Y AVA+++ + Sbjct: 76 PSKLYVAVAEVLAFV 90 >gi|313682765|ref|YP_004060503.1| type iii secretion exporter [Sulfuricurvum kujiense DSM 16994] gi|313155625|gb|ADR34303.1| type III secretion exporter [Sulfuricurvum kujiense DSM 16994] Length = 83 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY +T+ DAP +VAKG+ A+ + KIA HN+PI ++ L L +V ++ IP Sbjct: 4 AVALRYDRTKEDAPRVVAKGKGASAENIIKIAELHNLPIHKDEDLVE-LLSKVELDKEIP 62 Query: 336 PVFYKAVAQLIYKIYH 351 Y AV ++ IY Sbjct: 63 EKLYVAVVEVFGFIYK 78 >gi|33596160|ref|NP_883803.1| putative flagellar protein [Bordetella parapertussis 12822] gi|33601568|ref|NP_889128.1| putative flagellar protein [Bordetella bronchiseptica RB50] gi|33573163|emb|CAE36815.1| conserved hypothetical protein [Bordetella parapertussis] gi|33576004|emb|CAE33084.1| putative flagellar protein [Bordetella bronchiseptica RB50] Length = 104 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y E AP +VAKG +A + + A EH + + E L L QV +++ I Sbjct: 16 VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHI 73 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y AVA+L+ +Y + Sbjct: 74 PPQLYTAVAELLAWLYRLE 92 >gi|149928166|ref|ZP_01916412.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105] gi|149823151|gb|EDM82389.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105] Length = 95 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y+ + AP +VAKGQ LIA+++ + A E + + E L SL V ++ IP Sbjct: 10 AVALAYL-EHSGAPKVVAKGQGLIAEQIIQKAKESGVFVHESRELV-SLLMNVDLDQQIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+A+A+L+ +Y Sbjct: 68 PGLYQAIAELLAWVYQ 83 >gi|325294769|ref|YP_004281283.1| type III secretion exporter [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065217|gb|ADY73224.1| type III secretion exporter [Desulfurobacterium thermolithotrophum DSM 11699] Length = 88 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L+Y + +++AP +VAKG+ ++A+++ ++A +HNIPI E+ L L K + I IP Sbjct: 5 AVVLKYNKAKDNAPKVVAKGEGILAERILELAQKHNIPIVEDKELVSFLLK-LNIGEEIP 63 Query: 336 PVFYKAVAQLIYKIYH 351 P YK +A+++ Y+ Sbjct: 64 PTLYKIIAKILSYAYN 79 >gi|56419742|ref|YP_147060.1| hypothetical protein GK1207 [Geobacillus kaustophilus HTA426] gi|56379584|dbj|BAD75492.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 95 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP++ AKG +A+ + A +H +PI ++P+L L +V IN IP Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINEMIP 66 Query: 336 PVFYKAVAQLIYKIYHK 352 Y VA+L +Y Sbjct: 67 EELYALVAELFAFLYQL 83 >gi|302878303|ref|YP_003846867.1| type III secretion exporter [Gallionella capsiferriformans ES-2] gi|302581092|gb|ADL55103.1| type III secretion exporter [Gallionella capsiferriformans ES-2] Length = 97 Score = 88.3 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y QT + AP +VA+G+ LIA+ + + A ++ + + E L L QV ++ IP Sbjct: 9 AVALAYGQT-SGAPKVVARGRGLIAQAIIERAKQNGVYVHESADLV-GLLMQVELDEQIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 67 PQLYLAVAELLAWLYRLE 84 >gi|57505499|ref|ZP_00371427.1| FlhB domain protein [Campylobacter upsaliensis RM3195] gi|315638835|ref|ZP_07894007.1| FlhB domain protein [Campylobacter upsaliensis JV21] gi|57016324|gb|EAL53110.1| FlhB domain protein [Campylobacter upsaliensis RM3195] gi|315481053|gb|EFU71685.1| FlhB domain protein [Campylobacter upsaliensis JV21] Length = 96 Score = 88.3 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTE-NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y + + AP ++A G+ A K+ +A EH +PI E+ L + ++ + I Sbjct: 11 AVALGYQREKKESAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEI 69 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP YKAVA++ IY Sbjct: 70 PPNMYKAVAEVFAFIYQM 87 >gi|170722818|ref|YP_001750506.1| hypothetical protein PputW619_3655 [Pseudomonas putida W619] gi|169760821|gb|ACA74137.1| conserved hypothetical protein [Pseudomonas putida W619] Length = 114 Score = 88.3 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + +A EH +PI+E L R L ++ + IP Sbjct: 9 AIALSYD--GQQAPTLSAKGDDELAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A++I + + Sbjct: 66 EALYLTIAEIIAFAWQLR 83 >gi|119899000|ref|YP_934213.1| flagellar related protein [Azoarcus sp. BH72] gi|119671413|emb|CAL95326.1| conserved hypothetical flagellar related protein [Azoarcus sp. BH72] Length = 125 Score = 88.3 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL Y E AP +VAKG+ LIA+++ + A + I + + L +L QV ++ Sbjct: 13 PRGEAVALTYASGEA-APRVVAKGRGLIAQEIIERARDAGIYVHQSRELV-ALLMQVDLD 70 Query: 332 SAIPPVFYKAVAQLIYKIYH 351 S IPP Y VA+L+ +Y Sbjct: 71 SHIPPQLYVVVAELLAWLYR 90 >gi|329915167|ref|ZP_08276222.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] gi|327544973|gb|EGF30311.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium IMCC9480] Length = 97 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 +P A+AL Y Q+ + AP +VAKG+ LIA ++ + A EH + + E L +L QV + Sbjct: 6 SPLKNAVALAY-QSGDAAPKIVAKGRGLIATQIIERAKEHGVFVHESKELV-ALLMQVDL 63 Query: 331 NSAIPPVFYKAVAQLIYKIYH 351 + IPP Y+A+A+L+ +YH Sbjct: 64 DGQIPPALYRAIAELLAWLYH 84 >gi|225569990|ref|ZP_03779015.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM 15053] gi|225161460|gb|EEG74079.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM 15053] Length = 117 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + +PV+VA G +A+K+ + A + +P++E+ SLA +L Q+ + S IP Sbjct: 12 AVALTYDEDKQASPVIVASGMGYLAEKIVETAEKSGVPVYEDNSLA-TLLTQLDLGSEIP 70 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+A+ + + K Sbjct: 71 EELYQAIVDIYIYFLNYK 88 >gi|311105963|ref|YP_003978816.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8] gi|310760652|gb|ADP16101.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8] Length = 105 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y ++ AP +VAKG +A + + A E+ + + E L L QV +++ IP Sbjct: 19 AVAISYE-DKDGAPRVVAKGYGQLADTIVRAAQENGLYVHESRELV-GLLMQVDLDAHIP 76 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 77 PQLYVAVAELLAWLYRLE 94 >gi|148546777|ref|YP_001266879.1| flagellar protein FhlB-like protein [Pseudomonas putida F1] gi|148510835|gb|ABQ77695.1| cytoplasmic domain of flagellar protein FhlB-like protein [Pseudomonas putida F1] Length = 112 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ + IP Sbjct: 9 AIALNYD--GHQAPTLTAKGDEDLAEAILALAREHEVPIYENADLVR-LLARLELGDQIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A++I + + Sbjct: 66 EALYLTIAEIIAFAWQLR 83 >gi|194292856|ref|YP_002008763.1| flagellar protein [Cupriavidus taiwanensis LMG 19424] gi|193226760|emb|CAQ72711.1| putative flagellar protein [Cupriavidus taiwanensis LMG 19424] Length = 96 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + + AP +VAKG ++A+ + A E + + + P+L +L QV ++S IP Sbjct: 11 AVALSYQPS-DKAPRIVAKGYGVVAEAIIARAKEAGVYVHDSPTLV-NLLMQVDLDSQIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 69 PQLYVAVAELLAWLYQLE 86 >gi|212639580|ref|YP_002316100.1| hypothetical protein Aflv_1754 [Anoxybacillus flavithermus WK1] gi|212561060|gb|ACJ34115.1| Uncharacterized protein containing cytoplasmic domain of flagellar protein FhlB [Anoxybacillus flavithermus WK1] Length = 87 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ APV+VAKG+ +A ++ + A ++++PI+E+ +LA ++ Q+ +N IP Sbjct: 6 AVALSYD-EQHIAPVVVAKGEGAVADRIIERAKQYDVPIYEDETLA-TMLGQLQLNETIP 63 Query: 336 PVFYKAVAQLIYKIYH 351 YK VA++ IY Sbjct: 64 EELYKVVAEVFAFIYQ 79 >gi|33592505|ref|NP_880149.1| putative flagellar protein [Bordetella pertussis Tohama I] gi|33572151|emb|CAE41695.1| putative flagellar protein [Bordetella pertussis Tohama I] gi|332381923|gb|AEE66770.1| putative flagellar protein [Bordetella pertussis CS] Length = 108 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y E AP +VAKG +A + + A EH + + E L L QV +++ I Sbjct: 20 VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHI 77 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y AVA+L+ +Y + Sbjct: 78 PPQLYTAVAELLAWLYRLE 96 >gi|125973277|ref|YP_001037187.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405] gi|256003757|ref|ZP_05428745.1| FlhB domain protein [Clostridium thermocellum DSM 2360] gi|281417480|ref|ZP_06248500.1| type III secretion exporter [Clostridium thermocellum JW20] gi|125713502|gb|ABN51994.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405] gi|255992318|gb|EEU02412.1| FlhB domain protein [Clostridium thermocellum DSM 2360] gi|281408882|gb|EFB39140.1| type III secretion exporter [Clostridium thermocellum JW20] gi|316940491|gb|ADU74525.1| type III secretion exporter [Clostridium thermocellum DSM 1313] Length = 94 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 AL+Y EN+AP ++ G+ IA+K+ + A E+NIPI+E LA +L + I IPP Sbjct: 12 ALKYSPEENNAPQIIGLGKGEIAEKILEKAKENNIPIYENEELAAAL-NAMNIGDEIPPE 70 Query: 338 FYKAVAQLIYKI 349 Y VAQ++ + Sbjct: 71 LYDIVAQILVFV 82 >gi|120554879|ref|YP_959230.1| flagellar protein FhlB cytoplasmic domain-containing protein [Marinobacter aquaeolei VT8] gi|120324728|gb|ABM19043.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter aquaeolei VT8] Length = 106 Score = 88.3 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y APV+ A G +A+++ +IA ++N+P++E LA + ++ +N IP Sbjct: 12 AVALKYDGE--RAPVISATGTWELAEEIIRIARDNNVPLYENAELA-GILARLSLNEEIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A+++ +H + Sbjct: 69 EELYRVIAEILAFAFHIR 86 >gi|237653555|ref|YP_002889869.1| flagellar related protein [Thauera sp. MZ1T] gi|237624802|gb|ACR01492.1| flagellar related protein [Thauera sp. MZ1T] Length = 114 Score = 87.9 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP +VAKG+ ++A+++ + A E + + E P L +L QV +++ IP Sbjct: 12 AVALAYTAGEA-APRVVAKGKGVVAREILERAREAGVFVHESPELV-ALLMQVDLDARIP 69 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y AVA+L+ +Y + Sbjct: 70 PQLYVAVAELLAWLYRLE 87 >gi|323956512|gb|EGB52254.1| flagellar biosynthetic protein FlhB [Escherichia coli H263] Length = 115 Score = 87.9 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MS D D+KTEAP+ ++E A EG P SRE + +L + + F ++ Sbjct: 1 MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115 L L + D + I+ + L A ++P + ++ I S ++ Sbjct: 59 MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGG 112 >gi|313497828|gb|ADR59194.1| Flagellar protein FhlB-like protein [Pseudomonas putida BIRD-1] Length = 112 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ + IP Sbjct: 9 AIALNYD--GHQAPTLTAKGDEELAEAILALAREHEVPIYENAELVR-LLARLELGDQIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A++I +H + Sbjct: 66 EALYLTIAEIIAFAWHLR 83 >gi|332284044|ref|YP_004415955.1| putative flagellar protein [Pusillimonas sp. T7-7] gi|330427997|gb|AEC19331.1| putative flagellar protein [Pusillimonas sp. T7-7] Length = 99 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y + AP +VAKG +A+ + + A EH + + E P L L QV +++ IP Sbjct: 15 AVAVTYD-KHDAAPRVVAKGYGTVAENIIRSAKEHGLHVHESPELV-GLLMQVDLDAHIP 72 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y A+A+L+ +Y + Sbjct: 73 PELYLAIAELLAWLYALE 90 >gi|126664979|ref|ZP_01735962.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter sp. ELB17] gi|126630349|gb|EBA00964.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Marinobacter sp. ELB17] Length = 96 Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y AP + A G + +A ++ +IA EH +P++E LA +L ++ +N IP Sbjct: 13 AVALKYDGE--RAPTISAVGNHELADEIIRIAREHGVPLYENAELASTL-ARLSLNDEIP 69 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ VA+++ +H + Sbjct: 70 EQLYQLVAEILAFAFHIR 87 >gi|253998466|ref|YP_003050529.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4] gi|253985145|gb|ACT50002.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4] Length = 101 Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y + AP +VAKG+ L+A+++ A EH++ + E L SL Q+ ++ Sbjct: 11 TQQAIALAYETG-DFAPRVVAKGRGLVAEQIIARAREHDVFLHESKELV-SLLMQIDLDD 68 Query: 333 AIPPVFYKAVAQLIYKIYHKK 353 IPP Y A+A+++ +Y + Sbjct: 69 HIPPKLYMAIAEILAWLYRLE 89 >gi|26991019|ref|NP_746444.1| FlhB domain-containing protein [Pseudomonas putida KT2440] gi|24986048|gb|AAN69908.1|AE016629_10 FlhB domain protein [Pseudomonas putida KT2440] Length = 112 Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP L AKG +A+ + +A EH +PI+E L R L ++ + IP Sbjct: 9 AIALNYD--GHQAPTLTAKGDEDLAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A++I +H + Sbjct: 66 EALYLTIAEIIAFAWHLR 83 >gi|188996729|ref|YP_001930980.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931796|gb|ACD66426.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 87 Score = 87.6 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + + AP +VAKG+ +IA+++ ++A +H + + E+P+L L + + IP Sbjct: 8 AVALRYERYRDSAPKVVAKGKGIIAERIIEVAKQHGVYLKEDPTLVEVL-SGLELYEEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 YK +A++ IY K Sbjct: 67 EELYKVIAEIFVLIYQAK 84 >gi|118587806|ref|ZP_01545216.1| flhB-related protein [Stappia aggregata IAM 12614] gi|118439428|gb|EAV46059.1| flhB-related protein [Stappia aggregata IAM 12614] Length = 94 Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL+Y APV+ AKG +A+++ ++A E +PI + P +A +L Q+ ++ I Sbjct: 11 LAVALQYESE--GAPVVTAKGTGSMAEQIERLAREAGVPIEQNPMMAEAL-SQIEVDQEI 67 Query: 335 PPVFYKAVAQLIYKIYH 351 P Y+AVA LI I Sbjct: 68 PIELYQAVAVLIGFIMR 84 >gi|302188650|ref|ZP_07265323.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae 642] Length = 107 Score = 86.8 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +T P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L Sbjct: 1 MTLPDHTPRQAIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|28870794|ref|NP_793413.1| FlhB domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213968921|ref|ZP_03397061.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1] gi|301385357|ref|ZP_07233775.1| FlhB domain protein [Pseudomonas syringae pv. tomato Max13] gi|302061231|ref|ZP_07252772.1| FlhB domain protein [Pseudomonas syringae pv. tomato K40] gi|302133130|ref|ZP_07259120.1| FlhB domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854043|gb|AAO57108.1| FlhB domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213926220|gb|EEB59775.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1] gi|330879117|gb|EGH13266.1| FlhB domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967862|gb|EGH68122.1| FlhB domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015905|gb|EGH95961.1| FlhB domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 107 Score = 86.8 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 +T P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L Sbjct: 1 MTLPDHVPRQAIALSYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|218458074|ref|ZP_03498165.1| flagellar biosynthesis protein FlhB [Rhizobium etli Kim 5] Length = 71 Score = 86.8 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 36/61 (59%), Positives = 53/61 (86%) Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++ Sbjct: 1 MVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRV 60 Query: 350 Y 350 Y Sbjct: 61 Y 61 >gi|121601225|ref|YP_994245.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei SAVP1] gi|121230035|gb|ABM52553.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei SAVP1] Length = 150 Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAK 294 S P + + A S + + T N A L Y + + AP +VAK Sbjct: 16 SEAQPARRVGRAERASSIAHRRRRRSRPTTTGSSRN--ERAAVLAYDAKGGDTAPRVVAK 73 Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 G L+A+++ + A + + + P + SL QV +++ IPP Y+AVA+L+ +Y + Sbjct: 74 GYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLAWLYALE 131 >gi|323703510|ref|ZP_08115156.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574] gi|323531501|gb|EGB21394.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574] Length = 89 Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A ALRY E+ APV+VA G+ +A + KIA EHNIP++++ LAR+L ++ + I Sbjct: 8 LAAALRYRHGEDAAPVVVAAGKGELAAAIEKIAREHNIPVYQDQHLARTL-TELGLGVEI 66 Query: 335 PPVFYKAVAQLIYKI 349 PP Y+ VA+++ + Sbjct: 67 PPELYEVVAKILVHV 81 >gi|144900470|emb|CAM77334.1| Type III secretion exporter [Magnetospirillum gryphiswaldense MSR-1] Length = 122 Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL+Y + DAP + A G+ +A+++ ++A+ + + + +P LA+ L V +++ I Sbjct: 30 IAVALQYDPDQADAPTVTASGKGAVAEQILQLAFANGVKVRTDPDLAQVL-AAVEVDTVI 88 Query: 335 PPVFYKAVAQLIYKIYH 351 P + AVA+++ +Y Sbjct: 89 PLEAFAAVAEILAYVYR 105 >gi|330894459|gb|EGH27120.1| type III secretion component protein HrcU [Pseudomonas syringae pv. mori str. 301020] Length = 148 Score = 86.8 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 3/135 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K+I DA +G S++ ++ L + + + L + Sbjct: 3 EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119 Query: 129 RVSLREGIKRIYSIN 143 +++ K+++S Sbjct: 120 KINPFSHAKQMFSGQ 134 >gi|289678892|ref|ZP_06499782.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 107 Score = 86.4 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L ++ + +IP Sbjct: 11 AIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|254491433|ref|ZP_05104612.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxidans DMS010] gi|224462911|gb|EEF79181.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxydans DMS010] Length = 96 Score = 86.4 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++AP + A G+ IA+++ +IA EHNIP+ E+ LA L + + IP Sbjct: 10 AIALQYD--GDNAPTVTASGEGAIAEEILRIAREHNIPLKEDALLAE-LLSDLNLGEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 P+ Y+ +A++I Y Sbjct: 67 PMLYRVIAEVIAYAY 81 >gi|77457802|ref|YP_347307.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf0-1] gi|77381805|gb|ABA73318.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 112 Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y N AP L AKG +A+++ +IA + +PI+E L L ++ + +IP Sbjct: 10 AIALKYD--GNHAPTLTAKGDEELAEEILRIARDCEVPIYENAELV-KLLARMELGDSIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I ++ K Sbjct: 67 EELYRTIAEIIAFAWNLK 84 >gi|269792960|ref|YP_003317864.1| FhlB domain-containing flagellar protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100595|gb|ACZ19582.1| flagellar protein with uncharacterized cytoplasmic FhlB domain-like protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 98 Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + + APV++A G+ +A+++ ++A E ++PI E+ +L + + + IP Sbjct: 15 AAALRYDEERDRAPVVMASGRGHVAERILEVAREASVPIVEDAALVGA-LLALEVGEEIP 73 Query: 336 PVFYKAVAQLIYKI 349 P Y AVA+++ + Sbjct: 74 PELYGAVAKVLAFV 87 >gi|66046624|ref|YP_236465.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63257331|gb|AAY38427.1| FlhB domain protein [Pseudomonas syringae pv. syringae B728a] gi|330953816|gb|EGH54076.1| FlhB domain-containing protein [Pseudomonas syringae Cit 7] gi|330972504|gb|EGH72570.1| FlhB domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 107 Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L ++ + +IP Sbjct: 11 AIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|237753416|ref|ZP_04583896.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC BAA-430] gi|229375683|gb|EEO25774.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC BAA-430] Length = 94 Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + AP ++AKG+ +A+K+ + A E +IP+F+ +L SL + ++ IP Sbjct: 11 AVALAYEQNKQRAPKVIAKGEGFLAEKIIEKAKEFDIPLFQSKALVDSLIH-LELDEEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 P YKAV ++ +Y Sbjct: 70 PTLYKAVVEVFIWLYQ 85 >gi|261855050|ref|YP_003262333.1| cytoplasmic domain of flagellar protein FhlB-like protein [Halothiobacillus neapolitanus c2] gi|261835519|gb|ACX95286.1| cytoplasmic domain of flagellar protein FhlB-like protein [Halothiobacillus neapolitanus c2] Length = 125 Score = 86.4 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M + +P A+AL+Y + P +VA GQ+L+A+++ A ++P+ E+ Sbjct: 1 MSRNIPKPKSE-KHPISRAVALKY--EGTELPQVVATGQHLVAEQIVARAKAADVPLVED 57 Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348 P+LA L + I IP ++AVA+++ Sbjct: 58 PALADML-ASLDIGDHIPNNLFRAVAEVLSY 87 >gi|157737630|ref|YP_001490313.1| FlhB domain-containing protein [Arcobacter butzleri RM4018] gi|157699484|gb|ABV67644.1| FlhB domain protein [Arcobacter butzleri RM4018] Length = 94 Score = 86.4 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +++AP + AKG+ + A + KIA E+ IPI ++ L L Q+ I+ IP Sbjct: 13 AVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDIDKEIP 71 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA++ IY Sbjct: 72 TSMYRAVAEIFSFIYDL 88 >gi|330899495|gb|EGH30914.1| FlhB domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 107 Score = 86.4 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L ++ + +IP Sbjct: 11 AIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|315637405|ref|ZP_07892618.1| FlhB domain protein [Arcobacter butzleri JV22] gi|315478297|gb|EFU69017.1| FlhB domain protein [Arcobacter butzleri JV22] Length = 94 Score = 86.0 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +++AP + AKG+ + A + KIA E+ IPI ++ L L Q+ ++ IP Sbjct: 13 AVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDVDKEIP 71 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+AVA++ IY Sbjct: 72 TSMYRAVAEIFSFIYDL 88 >gi|257484836|ref|ZP_05638877.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986556|gb|EGH84659.1| FlhB domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011126|gb|EGH91182.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 107 Score = 86.0 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 ++ P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L Sbjct: 1 MSLPDHVPRQAIALSYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|288940399|ref|YP_003442639.1| type III secretion exporter [Allochromatium vinosum DSM 180] gi|288895771|gb|ADC61607.1| type III secretion exporter [Allochromatium vinosum DSM 180] Length = 122 Score = 86.0 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 T A+AL + + AP + A G L A+++ KIA EH+IP+ +P L +L Q+P+ Sbjct: 8 PKTTKAVALHWDRE--HAPRITATGTGLTAEQILKIAEEHDIPLRADPVLVEAL-AQIPL 64 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 + IP Y AVA+++ ++ Sbjct: 65 GAEIPRALYVAVAEVLAFVF 84 >gi|114320959|ref|YP_742642.1| flagellar protein FhlB-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227353|gb|ABI57152.1| Uncharacterized cytoplasmic domain of flagellar protein FhlB-like protein [Alkalilimnicola ehrlichii MLHE-1] Length = 119 Score = 86.0 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y AP + AKG +A+++ ++A EH++P+ + L ++ Q+ + AI Sbjct: 17 LAVALEY--GGQGAPRVTAKGAGPLAERIIELAAEHDVPLETDADLV-AVLAQLELEQAI 73 Query: 335 PPVFYKAVAQLIYKIYHKK 353 P Y+ VA++I Y K Sbjct: 74 PESLYRVVAEVIAFAYLVK 92 >gi|224436936|ref|ZP_03657917.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313143408|ref|ZP_07805601.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] gi|313128439|gb|EFR46056.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818] Length = 91 Score = 86.0 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++AP +VAKGQN IA K+ A E ++P+F P L +SL Q+P++S IP Sbjct: 6 AVALAYNAEFDNAPRVVAKGQNDIALKIIAKAKEFDVPLFSNPLLVQSLL-QIPLDSHIP 64 Query: 336 PVFYKAVAQLIYKIYH 351 P Y AV ++ + Sbjct: 65 PEMYNAVVEVFVWLLQ 80 >gi|220932827|ref|YP_002509735.1| FlhB domain protein [Halothermothrix orenii H 168] gi|219994137|gb|ACL70740.1| FlhB domain protein [Halothermothrix orenii H 168] Length = 95 Score = 86.0 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY ++++AP +VA G+ IA+K+ + A +H+IPI ++ + +L + + I + IP Sbjct: 16 AVALRYNTSKDNAPRIVASGKGTIAEKIMETARKHDIPIEKDQDIVDALIR-LNIGTEIP 74 Query: 336 PVFYKAVAQLIYKIYHKK 353 YK +A+++ IY + Sbjct: 75 QELYKVIAEILSFIYKLE 92 >gi|73538920|ref|YP_299287.1| putative flagellar protein [Ralstonia eutropha JMP134] gi|72122257|gb|AAZ64443.1| putative flagellar protein [Ralstonia eutropha JMP134] Length = 93 Score = 86.0 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y QT++ AP +VAKG ++A+ + A E + + P+L +L QV ++S IP Sbjct: 11 AIALSY-QTDDKAPRVVAKGYGVVAEAIIARAREAGVYVHGSPTLV-NLLMQVDLDSHIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y A+A+L+ +Y + Sbjct: 69 PQLYVAIAELLAWLYQLE 86 >gi|182419087|ref|ZP_02950341.1| flagella-associated protein [Clostridium butyricum 5521] gi|237669411|ref|ZP_04529393.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377042|gb|EDT74612.1| flagella-associated protein [Clostridium butyricum 5521] gi|237655298|gb|EEP52856.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 85 Score = 86.0 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP + A G IA K+ + A E+N+PI L L V + + IP Sbjct: 7 AAALKYEFNSD-APTVAASGMGYIADKIIEKAEENNVPIVYNKELTD-LLCNVDVGTEIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y+AVA +I I Sbjct: 65 EELYEAVAHVIAFI 78 >gi|297531383|ref|YP_003672658.1| type III secretion exporter [Geobacillus sp. C56-T3] gi|297254635|gb|ADI28081.1| type III secretion exporter [Geobacillus sp. C56-T3] Length = 98 Score = 86.0 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +T PT A +RY ++ +P +VA+G +A+K+ ++A +H+IPI E+P L ++L Q+ Sbjct: 14 MTGPT--AAVIRYDESSGQSPTVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70 Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353 + IPP Y +A+++ I + Sbjct: 71 DLGDRIPPQLYAVIAEILILIQELE 95 >gi|225620909|ref|YP_002722167.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae WA1] gi|225215729|gb|ACN84463.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae WA1] Length = 89 Score = 86.0 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y + ++AP++V+KG N +AK+M IA +H +P+ + A+ L Q+ I IP Sbjct: 11 AAALLYNREIHNAPIVVSKGNNYLAKRMVDIARKHKVPVISDEDTAKHLM-QLEIGEEIP 69 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+AV+ ++ IY K Sbjct: 70 YSLYEAVSIILKYIYKLK 87 >gi|237799335|ref|ZP_04587796.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022191|gb|EGI02248.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 107 Score = 86.0 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 ++ P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L Sbjct: 1 MSLPDHVPRQAIALTYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|71733987|ref|YP_275475.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289626814|ref|ZP_06459768.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646515|ref|ZP_06477858.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487768|ref|ZP_07005809.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554540|gb|AAZ33751.1| flagellar biosynthetic FlhB domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157860|gb|EFH98939.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323986|gb|EFW80070.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328122|gb|EFW84127.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330869033|gb|EGH03742.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876079|gb|EGH10228.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330883294|gb|EGH17443.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 107 Score = 85.6 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 ++ P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L Sbjct: 1 MSLPDHVPRQAIALSYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|146307815|ref|YP_001188280.1| flagellar protein FhlB-like protein [Pseudomonas mendocina ymp] gi|145576016|gb|ABP85548.1| cytoplasmic domain of flagellar protein FhlB-like protein [Pseudomonas mendocina ymp] Length = 114 Score = 85.6 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +APVL AKG + +A+ + IA E+ +PI+E L R L ++ + AIP Sbjct: 13 AIALNYD--GQNAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 69 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I ++ + Sbjct: 70 EALYRCIAEIIAFAWYLQ 87 >gi|49089132|gb|AAT51646.1| PA1473 [synthetic construct] Length = 112 Score = 85.6 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|291525311|emb|CBK90898.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Eubacterium rectale DSM 17629] Length = 103 Score = 85.6 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y+ E AP ++A G+ +IA K+ + A E N+P +++ LA +L ++ I IP Sbjct: 19 AVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGDMIP 76 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ + Sbjct: 77 TELYEVVAEILVFVNDL 93 >gi|134298145|ref|YP_001111641.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1] gi|134050845|gb|ABO48816.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1] Length = 90 Score = 85.6 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A ALRY ++ AP +VA G+ +A + ++A EHNIP++ + +LA +L ++ + + I Sbjct: 8 VAAALRYHHGKDHAPTVVAVGKGDLATAIERLATEHNIPLYRDETLAHTL-TELGLGTEI 66 Query: 335 PPVFYKAVAQLIYKI 349 PP Y+AVA+++ + Sbjct: 67 PPELYEAVAKILIHV 81 >gi|116049416|ref|YP_791781.1| FlhB domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390161|ref|ZP_06879636.1| FlhB domain-containing protein [Pseudomonas aeruginosa PAb1] gi|115584637|gb|ABJ10652.1| putative FlhB domain protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 111 Score = 85.6 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|291529230|emb|CBK94816.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Eubacterium rectale M104/1] Length = 103 Score = 85.6 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y+ E AP ++A G+ +IA K+ + A E N+P +++ LA +L ++ I IP Sbjct: 19 AVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGDMIP 76 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ + Sbjct: 77 TELYEVVAEILVFVNDL 93 >gi|254785931|ref|YP_003073360.1| FlhB domain-containing protein [Teredinibacter turnerae T7901] gi|237687521|gb|ACR14785.1| FlhB domain protein [Teredinibacter turnerae T7901] Length = 95 Score = 85.6 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PT A+AL Y AP + AKG A+++ +IA E +P+ + L L Q+ + Sbjct: 6 PTK-AVALFYDGE--SAPTITAKGSGEQAEEILRIAREAEVPLCDNGPLVE-LLSQLELG 61 Query: 332 SAIPPVFYKAVAQLIYKIYHK 352 +IP Y AVA +I Y Sbjct: 62 DSIPKELYIAVAHIIAFAYQL 82 >gi|238916975|ref|YP_002930492.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750] gi|238872335|gb|ACR72045.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750] Length = 96 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y E AP ++A G+ IA+ + + A E ++PI+ + LA +L ++ I I Sbjct: 12 IAVALEYTPGEQ-APKILATGRGYIAESIIEKAGEADVPIYADSKLADTL-SKLEIGEMI 69 Query: 335 PPVFYKAVAQLIYKI 349 PP Y VA+++ + Sbjct: 70 PPELYTVVAEILVFV 84 >gi|209963527|ref|YP_002296442.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum centenum SW] gi|209956993|gb|ACI97629.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum centenum SW] Length = 109 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y Q + P +VA G+ +A+++ +A+ H +P+ E+ LAR L + + IP Sbjct: 13 AAALTYEQGSDALPRVVASGRGAVAERIVDLAFLHGVPVREDADLARVL-AAIDPGTEIP 71 Query: 336 PVFYKAVAQLIYKIYHK 352 P AVA+++ +Y Sbjct: 72 PDAIMAVAEVLAHLYRL 88 >gi|291288699|ref|YP_003505515.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM 12809] gi|290885859|gb|ADD69559.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM 12809] Length = 90 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A A+RY + + P LVAKGQ LIA K+ A EH++ I E+ L +L + + IP Sbjct: 8 AAAIRYDKDIDKVPKLVAKGQGLIADKIIAKAKEHDVHITEDKDLVEAL-STLDLYEEIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 YK VA L+ ++Y Sbjct: 67 EELYKVVAYLLAELYK 82 >gi|51246336|ref|YP_066220.1| flagellar biosynthetic protein (FlhB) [Desulfotalea psychrophila LSv54] gi|50877373|emb|CAG37213.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea psychrophila LSv54] Length = 86 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY Q E+ AP +VA G+ ++A+ + + + I E+ + L Q+ +N IP Sbjct: 5 AVALRYHQEEDRAPRVVASGKGIVAENIIETGEAAGVYIQEDRDMVE-LLAQIELNQEIP 63 Query: 336 PVFYKAVAQLIYKIYH 351 Y AV++++ +Y Sbjct: 64 MELYGAVSEILSFVYK 79 >gi|15596670|ref|NP_250164.1| hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1] gi|107100906|ref|ZP_01364824.1| hypothetical protein PaerPA_01001936 [Pseudomonas aeruginosa PACS2] gi|218892654|ref|YP_002441523.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58] gi|254234571|ref|ZP_04927894.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719] gi|254239822|ref|ZP_04933144.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192] gi|313106471|ref|ZP_07792702.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa 39016] gi|9947426|gb|AAG04862.1|AE004576_11 hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1] gi|126166502|gb|EAZ52013.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719] gi|126193200|gb|EAZ57263.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192] gi|218772882|emb|CAW28694.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58] gi|310879204|gb|EFQ37798.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa 39016] Length = 111 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|330888994|gb|EGH21655.1| FlhB domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 107 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325 ++ P H A+AL Y AP L AKG + +A+ + IA E+ +PI+E L L Sbjct: 1 MSLPDHVPRQAIALSY--GGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57 Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353 ++ + +IP Y+ +A++I +H K Sbjct: 58 ARMELGDSIPEPLYRTIAEIIAFAWHLK 85 >gi|330502794|ref|YP_004379663.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01] gi|328917080|gb|AEB57911.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01] Length = 113 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y APVL AKG + +A+ + IA E+ +PI+E L R L ++ + AIP Sbjct: 12 AIALNYD--GQSAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I ++ + Sbjct: 69 EALYRCIAEIIAFAWYLQ 86 >gi|254517947|ref|ZP_05130003.1| flagella-associated protein [Clostridium sp. 7_2_43FAA] gi|226911696|gb|EEH96897.1| flagella-associated protein [Clostridium sp. 7_2_43FAA] Length = 84 Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP + A G IA K+ + A E+++PI L L V I IP Sbjct: 7 AAALKYEENLI-APTVTASGMGHIADKILEKAEENDVPIVYNKELTD-LLCNVDIGEYIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y+AVA +I + Sbjct: 65 SDLYEAVAHIIAYV 78 >gi|238924650|ref|YP_002938166.1| flagellar biosynthesis [Eubacterium rectale ATCC 33656] gi|238876325|gb|ACR76032.1| flagellar biosynthesis [Eubacterium rectale ATCC 33656] Length = 103 Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y+ E AP ++A G+ +IA K+ + A E N+P +++ LA +L ++ I IP Sbjct: 19 AVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGDMIP 76 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ + Sbjct: 77 TELYEVVAEILVFVNDL 93 >gi|116696302|ref|YP_841878.1| flagellar biosynthesis protein [Ralstonia eutropha H16] gi|113530801|emb|CAJ97148.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 97 Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + AP +VAKG ++A+ + A E + I + P+L +L QV ++S +P Sbjct: 11 AIALSY-QHRDRAPRVVAKGYGVVAEAIIARAREAGVYIHDSPTLV-NLLMQVDLDSHVP 68 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y AVA+L+ IYH Sbjct: 69 PQLYVAVAELLAWIYHL 85 >gi|189426369|ref|YP_001953546.1| FlhB domain protein [Geobacter lovleyi SZ] gi|189422628|gb|ACD97026.1| FlhB domain protein [Geobacter lovleyi SZ] Length = 91 Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y Q APV+VAKG+ ++A+ + A E + + E P L +L QV ++ IP Sbjct: 13 AAALSYKQGFY-APVVVAKGKGIMAEAIIACAKEAGVYVHESPELV-TLLMQVDLDEHIP 70 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+AVA+++ IY + Sbjct: 71 AELYRAVAEILVWIYKME 88 >gi|330902019|gb|EGH33340.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica str. M301072PT] Length = 131 Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 3/132 (2%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE + K++ DA +G S++ ++A L + + + L + Sbjct: 3 EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 + + I + LS + + + M+ + S +Q + +K Sbjct: 63 IDRSFAASVELIASEGLTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119 Query: 129 RVSLREGIKRIY 140 +++ K+++ Sbjct: 120 KINPFSHAKQMF 131 >gi|124384516|ref|YP_001028101.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei NCTC 10229] gi|254201857|ref|ZP_04908221.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei FMH] gi|254207188|ref|ZP_04913539.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei JHU] gi|147747751|gb|EDK54827.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei FMH] gi|147752730|gb|EDK59796.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei JHU] Length = 127 Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMR 304 + A S + + T N A L Y + + AP +VAKG L+A+++ Sbjct: 3 RAERASSIAHRRRRRSRPTTTGSSRN--ERAAVLAYDAKGGDTAPRVVAKGYGLVAERII 60 Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 + A + + + P + SL QV +++ IPP Y+AVA+L+ +Y + Sbjct: 61 ERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLAWLYALE 108 >gi|90415325|ref|ZP_01223259.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium HTCC2207] gi|90332648|gb|EAS47818.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium HTCC2207] Length = 98 Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 + P+ A+AL Y APV+ AKGQ +A+ + + A + I I E+P L +L Q Sbjct: 1 MTYKPSRRAVALEY--GNRAAPVMTAKGQGEVAELIIEEAKKQGIQIAEDPQLV-ALLGQ 57 Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353 + +N IP Y AV+ ++ +Y K Sbjct: 58 LELNEEIPESLYVAVSVILSWVYWLK 83 >gi|83594159|ref|YP_427911.1| hypothetical protein Rru_A2827 [Rhodospirillum rubrum ATCC 11170] gi|83577073|gb|ABC23624.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 123 Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 275 YALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL Y P ++A G+ +A ++ +A+ H + + ++ LAR L V ++S Sbjct: 28 LAIALAYEPVDGAPPPRVIATGRGAVADQIIALAFAHGVKVRQDADLARVL-SAVDLDSE 86 Query: 334 IPPVFYKAVAQLIYKIYH 351 IP + AVA+++ +Y Sbjct: 87 IPVEAFVAVAEILAYVYR 104 >gi|302338392|ref|YP_003803598.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293] gi|301635577|gb|ADK81004.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293] Length = 84 Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKG AK++ +A +H +P+ + L + L+ + + IP Sbjct: 5 AIALAYDRDTYSAPRITAKGSGEAAKRLIALAKKHGVPVMGDEELVQRLY-LFDLEAVIP 63 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ VA++ +++ + Sbjct: 64 EDLYEVVAEIYSFVWNLR 81 >gi|126438997|ref|YP_001057280.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 668] gi|126218490|gb|ABN81996.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 668] Length = 105 Score = 84.5 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 268 IITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 + P A L Y + + AP +VAKG L+A+++ + A + + + P + SL Sbjct: 1 MSGPPRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLM 59 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 QV +++ IPP Y+AVA+L+ +Y + Sbjct: 60 QVDLDARIPPQLYQAVAELLAWLYALE 86 >gi|330940611|gb|EGH43653.1| FlhB domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 107 Score = 84.5 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA E+ +PI+E L L ++ + +IP Sbjct: 11 AIALSYD--GQHAPTLSAKGDEQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|313905165|ref|ZP_07838534.1| type III secretion exporter [Eubacterium cellulosolvens 6] gi|313470068|gb|EFR65401.1| type III secretion exporter [Eubacterium cellulosolvens 6] Length = 103 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY +N APV+VA G +A+K+ + A + +P++E+ SLA SL Q+ + IP Sbjct: 12 AAALRYDPEKNGAPVIVASGMGYMAEKITETAMKAGVPVYEDDSLA-SLLTQLKLGKEIP 70 Query: 336 PVFYKAVAQLIYKIY 350 ++A+ ++ +Y Sbjct: 71 EELFQAIVEI--YVY 83 >gi|240147023|ref|ZP_04745624.1| flagellar basal body protein FlhB [Roseburia intestinalis L1-82] gi|257200815|gb|EEU99099.1| flagellar basal body protein FlhB [Roseburia intestinalis L1-82] gi|291535190|emb|CBL08302.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Roseburia intestinalis M50/1] gi|291539720|emb|CBL12831.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Roseburia intestinalis XB6B4] Length = 104 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y + AP ++A G+ +A+++ + A E+++P +++ LA +L ++ I IP Sbjct: 17 AVAVAYEPG-DAAPKILAAGKGEVAERIIEKAKENDVPFYQDNKLAETL-SKLQIGDTIP 74 Query: 336 PVFYKAVAQLIYKI 349 P Y VA+++ + Sbjct: 75 PELYDVVAEILVFV 88 >gi|192361951|ref|YP_001982536.1| FlhB domain-containing protein [Cellvibrio japonicus Ueda107] gi|190688116|gb|ACE85794.1| FlhB domain protein [Cellvibrio japonicus Ueda107] Length = 100 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +AP + AKG +A+++ IA EH +P+ + PSL L + + +P Sbjct: 12 AVALFYD--GVNAPQVTAKGAGKVAEEIIAIAQEHGVPLCDNPSLVD-LLVNLELGDEVP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y AVA +I Y + Sbjct: 69 EALYIAVAYIIAFAYQLE 86 >gi|196247653|ref|ZP_03146355.1| flagellar biosynthesis [Geobacillus sp. G11MC16] gi|196212437|gb|EDY07194.1| flagellar biosynthesis [Geobacillus sp. G11MC16] Length = 95 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++APV+ AKG +A+ + +A ++ + + ++PSL L +V IN AIP Sbjct: 8 AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 66 Query: 336 PVFYKAVAQLIYKIYHK 352 Y VA+L +Y Sbjct: 67 EGLYALVAELFAFLYQL 83 >gi|118443083|ref|YP_877449.1| flagella-associated protein [Clostridium novyi NT] gi|118133539|gb|ABK60583.1| flagella-associated protein [Clostridium novyi NT] Length = 90 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP++ A G +A K+ + A ++ +P+ LA L V + S IP Sbjct: 9 AAALKYEMNYD-APIVSAAGMGYVADKIIEEAKKNEVPVVYNKELAE-LLTNVDVGSYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|152985566|ref|YP_001349208.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas aeruginosa PA7] gi|150960724|gb|ABR82749.1| flagellar biosynthetic FlhB domain protein [Pseudomonas aeruginosa PA7] Length = 111 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP L AKG +A+ + IA ++ +PI+E L R L ++ + AIP Sbjct: 12 AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 69 EALYRTIAEIIAFAWHLK 86 >gi|225174800|ref|ZP_03728798.1| cytoplasmic domain of flagellar protein FhlB-like protein [Dethiobacter alkaliphilus AHT 1] gi|225169927|gb|EEG78723.1| cytoplasmic domain of flagellar protein FhlB-like protein [Dethiobacter alkaliphilus AHT 1] Length = 89 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + ++DAP +VA+G IA+++ +A EH +P+ + LA +L V IP Sbjct: 9 AVALQYQEEKDDAPRVVARGAGKIAEQILLLAQEHGVPVKQSKVLAETL-SLVEPGDEIP 67 Query: 336 PVFYKAVAQLIYKIY 350 Y AVAQ++ ++ Sbjct: 68 EGLYLAVAQIMSEVL 82 >gi|218509883|ref|ZP_03507761.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5] Length = 67 Score = 84.1 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 49/57 (85%) Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350 KGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y Sbjct: 1 KGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 57 >gi|168185551|ref|ZP_02620186.1| flagella-associated protein [Clostridium botulinum C str. Eklund] gi|169296547|gb|EDS78680.1| flagella-associated protein [Clostridium botulinum C str. Eklund] Length = 90 Score = 83.7 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP++ A G +A K+ + A + +P+ LA L V + S IP Sbjct: 9 AAALKYEMNYD-APIVSAAGMGHVADKIIEEAEKSEVPVVYNKELAE-LLTNVDVGSYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|308048779|ref|YP_003912345.1| FlhB domain-containing protein [Ferrimonas balearica DSM 9799] gi|307630969|gb|ADN75271.1| FlhB domain-containing protein [Ferrimonas balearica DSM 9799] Length = 105 Score = 83.7 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y DAP +VA G+ +A+++R+ A E + + ++ LA L Q+ + Sbjct: 10 TDKAVALGYDGK--DAPKVVASGEGELARQIRQAAEEAGVLVHQDAQLAH-LLSQLELGQ 66 Query: 333 AIPPVFYKAVAQLIYKIY 350 +IPP Y +A+LI Y Sbjct: 67 SIPPALYVVIAELIAYAY 84 >gi|90021509|ref|YP_527336.1| flagellar protein FhlB-like protein [Saccharophagus degradans 2-40] gi|89951109|gb|ABD81124.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Saccharophagus degradans 2-40] Length = 98 Score = 83.7 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y P++ AKG A+++ +IA E +P+ + L L Q+ + +IP Sbjct: 14 AVALYYDGENT--PIVTAKGLGEEAQEIIRIAEESGVPLCDNALLVE-LLAQLELGDSIP 70 Query: 336 PVFYKAVAQLIYKIYHKKI 354 Y A+A ++ Y ++ Sbjct: 71 GSLYTAIAHILSFAYQLEL 89 >gi|53717877|ref|YP_106863.1| putative export system protein [Burkholderia pseudomallei K96243] gi|76809013|ref|YP_331835.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia pseudomallei 1710b] gi|126452833|ref|YP_001064522.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 1106a] gi|134283659|ref|ZP_01770358.1| flagellar biosynthesis protein-like protein [Burkholderia pseudomallei 305] gi|167717608|ref|ZP_02400844.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei DM98] gi|167736651|ref|ZP_02409425.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 14] gi|167813749|ref|ZP_02445429.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 91] gi|167822265|ref|ZP_02453736.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 9] gi|167843859|ref|ZP_02469367.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei B7210] gi|167892359|ref|ZP_02479761.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 7894] gi|167900856|ref|ZP_02488061.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei NCTC 13177] gi|167909073|ref|ZP_02496164.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 112] gi|167917114|ref|ZP_02504205.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei BCC215] gi|217425046|ref|ZP_03456542.1| FlhB domain protein [Burkholderia pseudomallei 576] gi|226199749|ref|ZP_03795300.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei Pakistan 9] gi|237810417|ref|YP_002894868.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia pseudomallei MSHR346] gi|242314705|ref|ZP_04813721.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1106b] gi|254182179|ref|ZP_04888776.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 1655] gi|254188109|ref|ZP_04894621.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei Pasteur 52237] gi|254196973|ref|ZP_04903397.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei S13] gi|254259290|ref|ZP_04950344.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1710a] gi|254295778|ref|ZP_04963235.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 406e] gi|52208291|emb|CAH34223.1| putative export system protein [Burkholderia pseudomallei K96243] gi|76578466|gb|ABA47941.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia pseudomallei 1710b] gi|126226475|gb|ABN90015.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1106a] gi|134245068|gb|EBA45163.1| flagellar biosynthesis protein-like protein [Burkholderia pseudomallei 305] gi|157805669|gb|EDO82839.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 406e] gi|157935789|gb|EDO91459.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei Pasteur 52237] gi|169653716|gb|EDS86409.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei S13] gi|184212717|gb|EDU09760.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei 1655] gi|217392066|gb|EEC32092.1| FlhB domain protein [Burkholderia pseudomallei 576] gi|225928100|gb|EEH24136.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei Pakistan 9] gi|237505628|gb|ACQ97946.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia pseudomallei MSHR346] gi|242137944|gb|EES24346.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1106b] gi|254217979|gb|EET07363.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei 1710a] Length = 105 Score = 83.7 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 268 IITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 + P A L Y + + AP +VAKG L+A+++ + A + + + P + SL Sbjct: 1 MSGPPRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLM 59 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 QV +++ IPP Y+AVA+L+ +Y + Sbjct: 60 QVDLDARIPPQLYQAVAELLAWLYALE 86 >gi|138894728|ref|YP_001125181.1| flagellar biosynthesis protein [Geobacillus thermodenitrificans NG80-2] gi|134266241|gb|ABO66436.1| Flagellar biosynthesis [Geobacillus thermodenitrificans NG80-2] Length = 98 Score = 83.7 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++APV+ AKG +A+ + +A ++ + + ++PSL L +V IN AIP Sbjct: 11 AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 Y VA+L +Y Sbjct: 70 EGLYALVAELFAFLYQL 86 >gi|306821511|ref|ZP_07455113.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550469|gb|EFM38458.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 87 Score = 83.7 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ AP ++AKG N +AK M + A E +IPI+ + + L + + IN IP Sbjct: 9 AIALKYDSEEDIAPKVIAKGDNYVAKNMVEKAEELDIPIYRDEKIVHQL-RNLEINDNIP 67 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+A+AQ++ I Sbjct: 68 QELYEAIAQVLIFITKL 84 >gi|291519508|emb|CBK74729.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Butyrivibrio fibrisolvens 16/4] Length = 96 Score = 83.3 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 49/78 (62%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP ++A G+ +A+++ + A ++++P +++ LA++L ++ I AIP Sbjct: 13 AVALSYEVG-DAAPKILASGKGYVAEQIIEEAKKNDVPFYQDNELAQTL-SKLNIGDAIP 70 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+ VA+++ + + Sbjct: 71 PELYEVVAEILVFVNDME 88 >gi|317122916|ref|YP_004102919.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM 12885] gi|315592896|gb|ADU52192.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM 12885] Length = 211 Score = 83.3 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS---LARSLFK 326 T P A ALRY + AP +VA G +A+ + + A E +P P LAR Sbjct: 18 TRPPRAAAALRYDPARDGAPRVVAAGFGAMAEAILRRAREAGVPQVTSPVAPILAR---- 73 Query: 327 QVPINSAIPPVFYKAVAQLIY 347 +P IPP Y+ VA+++ Sbjct: 74 -IPPGQEIPPALYEVVARIMA 93 >gi|149182544|ref|ZP_01861016.1| flagellar biosynthesis [Bacillus sp. SG-1] gi|148849736|gb|EDL63914.1| flagellar biosynthesis [Bacillus sp. SG-1] Length = 98 Score = 83.3 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY ++E AP ++A+G +A K+ ++A EHNI + E+ SL +SL + Sbjct: 14 MNGPT--AAVIRYEESEGKAPKVIAQGTGHLATKIMELAKEHNITMQEDSSLVQSLL-DI 70 Query: 329 PINSAIPPVFYKAVAQLIYKI 349 + +PP Y +A+++ I Sbjct: 71 DLGENVPPQLYSVIAEILLFI 91 >gi|326796438|ref|YP_004314258.1| type III secretion exporter [Marinomonas mediterranea MMB-1] gi|326547202|gb|ADZ92422.1| type III secretion exporter [Marinomonas mediterranea MMB-1] Length = 82 Score = 82.9 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y +AP + AKG L+A+++ ++A E+++ + E P L L + I IP Sbjct: 4 AVALQYD--YQNAPKVTAKGSGLLAERIMEVAEENDVLLHESPELVEVL-ATLEIGDEIP 60 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y AVA++I ++ K Sbjct: 61 ESLYLAVAEIIAFAHNIK 78 >gi|295678020|ref|YP_003606544.1| type III secretion exporter [Burkholderia sp. CCGE1002] gi|295437863|gb|ADG17033.1| type III secretion exporter [Burkholderia sp. CCGE1002] Length = 122 Score = 82.9 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y AP +VAKG L+A + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAHGGEPAPRVVAKGYGLLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPELYQAVAELLAWLHRLE 86 >gi|302343755|ref|YP_003808284.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii DSM 2075] gi|301640368|gb|ADK85690.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii DSM 2075] Length = 106 Score = 82.9 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%) Query: 276 ALALRYIQT---ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 A+ALRY A + AKG+ +A+++ ++A +H +PI ++P L + ++ I+ Sbjct: 16 AVALRYGPEGHETTGA--VAAKGRLRLAERIIELARQHGVPIKQDPDLVE-ILARLDIDE 72 Query: 333 AIPPVFYKAVAQLIYKIYH 351 IPP Y A+++ ++ Sbjct: 73 EIPPELYVVAAEILAFVHR 91 >gi|239995701|ref|ZP_04716225.1| uncharacterized C-terminal FlhB domain-containing protein [Alteromonas macleodii ATCC 27126] Length = 105 Score = 82.9 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 273 THYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 T A+ L+Y + +AP +VAKG +A+ + +A E I I E+P L+ L + + Sbjct: 7 TKRAIGLKYDGGDKKNAPKVVAKGYGDLAEAIIAMAEETGILIHEDPYLSEVL-ATLDVG 65 Query: 332 SAIPPVFYKAVAQLIY--KIYHKKI 354 IP Y +A+L+ + KI Sbjct: 66 QDIPESLYYVIAELLAYSYVLQGKI 90 >gi|227871678|ref|ZP_03990091.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] gi|227842477|gb|EEJ52694.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus F0268] Length = 111 Score = 82.9 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y +N AP++VA G +A+K+ + A + +P++E+ SLA SL Q+ + + IP Sbjct: 12 AAALKYDNEKNGAPMIVAAGMGHMAEKITETAMKSGVPVYEDDSLA-SLLTQMKLGAEIP 70 Query: 336 PVFYKAVAQLIYKIY 350 ++A+ ++ IY Sbjct: 71 EELFQAIVEI--YIY 83 >gi|330976060|gb|EGH76126.1| FlhB domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 107 Score = 82.9 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ALAL Y AP L AKG + +A+ + IA E+ +PI+E L L ++ + +IP Sbjct: 11 ALALSYD--GQHAPTLSAKGDDQLAEAILAIAPEYEVPIYENAELV-KLLARMELGDSIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A++I +H K Sbjct: 68 EPLYRTIAEIIAFAWHLK 85 >gi|330903429|gb|EGH34001.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica str. M301072PT] Length = 159 Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 62/162 (38%), Gaps = 3/162 (1%) Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79 DA +G S++ ++A L + + + L + + + Sbjct: 1 RDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKGIDRSFAASVEL 60 Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139 I + LS + + + M+ + S +Q + +K +++ K++ Sbjct: 61 IASEGLTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPNKINPFSHAKQM 117 Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 +S NL+N + S +K I +G + + + T++ +++ Sbjct: 118 FSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDL 159 >gi|239817130|ref|YP_002946040.1| flagellar biosynthesis protein [Variovorax paradoxus S110] gi|239803707|gb|ACS20774.1| flagellar biosynthesis protein [Variovorax paradoxus S110] Length = 97 Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A+AL APV+VAKG + A+ + + A E+ + + P L R L QV ++ Sbjct: 7 PRQSAVALS-HADTAKAPVVVAKGYGVTAESILRQARENGVYVHASPDLIR-LLMQVDLD 64 Query: 332 SAIPPVFYKAVAQLIYKI 349 IPP Y AVA+++ I Sbjct: 65 RQIPPQLYLAVAEVMAWI 82 >gi|330862334|emb|CBX72494.1| hypothetical protein YEW_GP28250 [Yersinia enterocolitica W22703] Length = 143 Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 14 PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73 P+S K+ A +G+ P S++ ++ + ++ LI L F + + +A + Sbjct: 12 PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLPYYKELIGESFLAVGRTAGR-- 69 Query: 74 LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 ++D + I LL + ++ L + I + L+ + P FK++S Sbjct: 70 IDDPTAIEQLLLANLFIFFKFLL-TLAPIPLVSILATLVPGGWNFTPVKLIPDFKKLSPL 128 Query: 134 EGIKRIY 140 GIK+ + Sbjct: 129 AGIKKYF 135 >gi|92114151|ref|YP_574079.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens DSM 3043] gi|91797241|gb|ABE59380.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens DSM 3043] Length = 101 Score = 82.6 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + APV+VAKG +A+++ + A I + + P L +L QV +++ IP Sbjct: 11 AVALAY-QDASAAPVVVAKGYGELAERIVEKAKHEGIFVHDAPELV-ALLMQVDMDAEIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+ +A+L+ +Y + Sbjct: 69 PTLYQVIAELLAWVYDLE 86 >gi|222100070|ref|YP_002534638.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM 4359] gi|221572460|gb|ACM23272.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM 4359] Length = 80 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY + +AP +VAKG +A+K+ +IA + IPI E P L L + + + S IP Sbjct: 9 AVALRYDPSSMNAPEVVAKGAGEVAEKIIEIAKRYGIPIEERPDLVDDLLR-LELFSEIP 67 Query: 336 PVFYKAVAQ 344 Y +A+ Sbjct: 68 EEMYLVIAE 76 >gi|309389531|gb|ADO77411.1| FlhB domain protein [Halanaerobium praevalens DSM 2228] Length = 89 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL+Y Q + AP ++A G+ IA+ + K A E NIPI ++ + + L ++ I IP Sbjct: 10 VALKYDQKNDQAPRIIASGKGSIAEMIIKKAKEENIPIKKDKDVVQVL-AELNIGEQIPE 68 Query: 337 VFYKAVAQLIYKIYHKK 353 Y +A+++ Y + Sbjct: 69 ELYTVIAEILSFFYDLE 85 >gi|15644420|ref|NP_229472.1| flagellar biosynthesis-related protein [Thermotoga maritima MSB8] gi|4982247|gb|AAD36739.1|AE001808_14 flagellar biosynthesis-related protein [Thermotoga maritima MSB8] Length = 86 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y T AP +VAKG +A+++ ++A H IPI E P + L + + + S IP Sbjct: 9 AVALKYDPTRTSAPEVVAKGVGEVAERIIEMARRHGIPIEERPDIIDDLLR-LDLFSEIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 Y +A++ + Sbjct: 68 EEMYLVIAEIYAFLKR 83 >gi|109899563|ref|YP_662818.1| FlhB domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109701844|gb|ABG41764.1| FlhB domain protein [Pseudoalteromonas atlantica T6c] Length = 110 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL++ + + +AP +VAKG +A ++ +A E + I E+P L+ L + + I Sbjct: 15 AVALKHHEGDKKNAPQVVAKGFGDLADEIITLAKESGVLIHEDPYLSEFL-ASLDLGQEI 73 Query: 335 PPVFYKAVAQLI--YKIYHKK 353 P Y +A+LI + K Sbjct: 74 PEELYHVIAELISFSYVLQGK 94 >gi|239828347|ref|YP_002950971.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] gi|239808640|gb|ACS25705.1| flagellar biosynthesis protein [Geobacillus sp. WCH70] Length = 98 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 I PT A +RY + +P +VA+G +A+K+ ++A +HN+ I E+P L ++L + Sbjct: 14 INGPT--AAVIRYDEETGKSPTVVAQGTGYVAQKIIELAKQHNVHIQEDPLLVQNLL-NL 70 Query: 329 PINSAIPPVFYKAVA 343 + +IPP Y +A Sbjct: 71 DLGDSIPPQLYAVIA 85 >gi|288573050|ref|ZP_06391407.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568791|gb|EFC90348.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002] Length = 91 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + E +AP LVA G IA+++ ++A E +PI E+ +L + + I IP Sbjct: 11 AAALKYDREEREAPHLVASGSGRIAERIVEVAREAEVPIVEDAALVSA-LLALDIGEEIP 69 Query: 336 PVFYKAVAQLIYKIYH 351 Y+AVA+++ IY Sbjct: 70 LDLYEAVARVLAFIYK 85 >gi|325290208|ref|YP_004266389.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271] gi|324965609|gb|ADY56388.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271] Length = 101 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A AL Y AP +VAKG+ IA+K+ + A E IPI + +L +L V ++ Sbjct: 11 PKEKAAALAY--EHTGAPRVVAKGEGYIAQKIIEKAGEQGIPIQKNEALVNALM-LVELS 67 Query: 332 SAIPPVFYKAVAQLIYKIYHK 352 IP Y+ VAQ++ IY Sbjct: 68 GEIPVELYEVVAQVLAFIYRL 88 >gi|160880531|ref|YP_001559499.1| flagellar protein FhlB-like protein [Clostridium phytofermentans ISDg] gi|160429197|gb|ABX42760.1| cytoplasmic domain of flagellar protein FhlB-like protein [Clostridium phytofermentans ISDg] Length = 122 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A+ Y ++ AP ++A G+N++A K+ + A E +IPI ++ LA +L ++ + IP Sbjct: 34 AVAISYDP-KDPAPRIIASGKNILADKIIEKALEEDIPIHKDVPLANTL-SKLELGDCIP 91 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y V+Q++ + Sbjct: 92 PELYGIVSQVLLFVDRM 108 >gi|260437011|ref|ZP_05790827.1| FlhB domain protein [Butyrivibrio crossotus DSM 2876] gi|292810320|gb|EFF69525.1| FlhB domain protein [Butyrivibrio crossotus DSM 2876] Length = 96 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y E AP ++A G +IA K+ + A ++P++E+ LA +L ++ I IP Sbjct: 11 AIAIQYNPDEV-APKILASGTGIIADKIIEKAKSSDVPLYEDNKLANTL-SKLDIGEYIP 68 Query: 336 PVFYKAVAQLIYKI 349 P Y VA+++ + Sbjct: 69 PELYSIVAEILVFV 82 >gi|320015477|gb|ADV99048.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 120 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 2/114 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E D+ K+E P++ K+E A +G P SRE + + A L L +++ Sbjct: 1 MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114 + L + + ++ + L ++P ++ + ++ Sbjct: 60 MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLG 112 >gi|167770250|ref|ZP_02442303.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM 17241] gi|167667572|gb|EDS11702.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ AP+++A G +A+++ +A + IP+F + S A SL + + S IP Sbjct: 9 AVALKYNAEEDVAPIVIASGYGELAQRIIDVAEKQGIPVFRDDS-AVSLMCMLEVGSNIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ VA + ++ Sbjct: 68 PELYQVVAAIYCQLLQ 83 >gi|23016629|ref|ZP_00056383.1| COG2257: Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Magnetospirillum magnetotacticum MS-1] Length = 117 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 A+AL P + A G+ +A+++ ++A+ H + + +P LA L V +++ Sbjct: 26 QVAVALADDPDNPGLPTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTV 84 Query: 334 IPPVFYKAVAQLIYKIYH 351 IP + AVA+++ +Y Sbjct: 85 IPVEAFVAVAEILAYVYR 102 >gi|224373751|ref|YP_002608123.1| flagellar basal body protein FlhB [Nautilia profundicola AmH] gi|223589598|gb|ACM93334.1| flagellar basal body protein FlhB [Nautilia profundicola AmH] Length = 87 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E +AP ++AKG+ +A+K+ + A +++P+F+ +LA L V + IP Sbjct: 4 AVALKYKAYEENAPKVLAKGKGELARKIIEKAKLYDVPLFQNETLADMLL-NVEVGEEIP 62 Query: 336 PVFYKAVAQLIYKIYHKK 353 P YKAV + +Y + Sbjct: 63 PKMYKAVVDVFIWLYKLE 80 >gi|289805561|ref|ZP_06536190.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 82 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E ++ D+KTEAP+ ++E A EG P SRE + +L + + F G S+ Sbjct: 1 MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWF----GGESLAR 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL 87 L +L++ ++ +L + Sbjct: 56 QLAGMLSAGLHFDHRMVNDPNLILGQI 82 >gi|315185654|gb|EFU19422.1| type III secretion exporter [Spirochaeta thermophila DSM 6578] Length = 104 Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y AP ++AKG+ A + ++A EH IPI E +AR + + IP Sbjct: 16 AVAMKYTPEL-PAPFVIAKGRGKTADLILELAREHRIPIVEHR-IAREGYDLFLPGTYIP 73 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA + +Y Sbjct: 74 EDLYEVVATIFAFVY 88 >gi|88812111|ref|ZP_01127363.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Nitrococcus mobilis Nb-231] gi|88790615|gb|EAR21730.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Nitrococcus mobilis Nb-231] Length = 113 Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I + A+AL Y T + AP + A+G +A+++ ++A H+IP++ L + L Q Sbjct: 12 MIEHDRRLAVALEY--TGHGAPRVTAQGHGALAEEIIRLAQAHDIPLYPNRDLVQVL-AQ 68 Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350 + ++ IP + Y AVA+LI Y Sbjct: 69 IELDQEIPELLYHAVAELIAFAY 91 >gi|150019417|ref|YP_001311671.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052] gi|149905882|gb|ABR36715.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052] Length = 86 Score = 81.8 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + APV+ A G IA K+ + A ++ +PI L L V + IP Sbjct: 7 AAALKYEFNSD-APVVTAAGMGHIADKIIEKATQNEVPIVYNKELTD-LLCNVDVGDEIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y+AVA +I + Sbjct: 65 TELYEAVAHVIAFL 78 >gi|229824938|ref|ZP_04451007.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC 49176] gi|229790941|gb|EEP27055.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC 49176] Length = 97 Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +AP ++A G+ +A+K+ + +++IP +E+ L +SL Q+ I IP Sbjct: 10 AVALGYDTESGEAPYVIAAGKGALAEKIISESKKNDIPQYEDEKLVKSL-SQLEIGENIP 68 Query: 336 PVFYKAVAQLIYKI 349 P Y+ VAQ++ + Sbjct: 69 PELYEVVAQVLLFV 82 >gi|209522461|ref|ZP_03271060.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] gi|209497100|gb|EDZ97356.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160] Length = 114 Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y AP +VAKG LIA+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAHGGEPAPRVVAKGYGLIAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPQLYQAVAELLAWLHRLE 86 >gi|32266819|ref|NP_860851.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC 51449] gi|32262871|gb|AAP77917.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC 51449] Length = 92 Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG+N +A K+ A E ++P+F P L SL ++P++S IP Sbjct: 6 AVALAYNAQNDSAPRVVAKGKNELALKIIAKAQEFDVPLFSNPLLVDSLL-EIPLDSHIP 64 Query: 336 PVFYKAVAQLIYKIYH 351 P Y AV ++ + Sbjct: 65 PEMYNAVVEVFVWLLK 80 >gi|332994252|gb|AEF04307.1| hypothetical protein ambt_13945 [Alteromonas sp. SN2] Length = 103 Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ L+Y + AP +VAKG +A+ + +A E I I E+P L+ L + + I Sbjct: 8 AIGLKYDGGDKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDI 66 Query: 335 PPVFYKAVAQLIY--KIYHKKI 354 P Y +A+L+ + KI Sbjct: 67 PESLYFVIAELLAYSYVLQGKI 88 >gi|254459185|ref|ZP_05072607.1| FlhB domain protein [Campylobacterales bacterium GD 1] gi|207084078|gb|EDZ61368.1| FlhB domain protein [Campylobacterales bacterium GD 1] Length = 83 Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + AP +VAKGQ A+ + KIA HN+PI ++ L L +V ++ +P Sbjct: 4 AAALRYNIDKESAPRVVAKGQGKSAENIIKIAELHNLPIKKDEDLME-LLSKVELDKEVP 62 Query: 336 PVFYKAVAQLIYKIYH 351 YKAVA++ IY Sbjct: 63 AALYKAVAEVFSFIYK 78 >gi|152997420|ref|YP_001342255.1| hypothetical protein Mmwyl1_3417 [Marinomonas sp. MWYL1] gi|150838344|gb|ABR72320.1| conserved hypothetical protein [Marinomonas sp. MWYL1] Length = 82 Score = 81.8 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP +VAKG L+A+K+ +A E+++ + + P L L + + IP Sbjct: 4 AVALKYDFS--AAPTVVAKGSGLLAEKILAVAKENDVLLHQSPELVEML-STLELGEEIP 60 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y AVA++I + K Sbjct: 61 ESLYLAVAEVIAFAHRIK 78 >gi|34558360|ref|NP_908175.1| hypothetical protein WS2076 [Wolinella succinogenes DSM 1740] gi|34484079|emb|CAE11075.1| hypothetical protein WS2076 [Wolinella succinogenes] Length = 102 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 ++ P A AL Y + AP L+AKG+ +IA+++ + A E IP+F+ L SL Sbjct: 11 LLAMPPLPKAAALAYDSQKQRAPKLLAKGKGIIAERIIERARELEIPLFQNELLVNSLL- 69 Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349 + P++ IPP YKAV ++ + Sbjct: 70 ESPLDQEIPPALYKAVVEVFVWL 92 >gi|296126255|ref|YP_003633507.1| type III secretion exporter [Brachyspira murdochii DSM 12563] gi|296018071|gb|ADG71308.1| type III secretion exporter [Brachyspira murdochii DSM 12563] Length = 87 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A A+ Y + ++APV++AKG++ +AK+M + A+++ +P+ + A L Q+ I IP Sbjct: 9 AAAILYNRDIHNAPVVIAKGRHYLAKRMAETAHKNKVPVVSDEKTAHHLM-QLEIGEEIP 67 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+AV+ ++ IY K Sbjct: 68 YSLYEAVSIILKYIYKLK 85 >gi|261420589|ref|YP_003254271.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61] gi|319768259|ref|YP_004133760.1| type III secretion exporter [Geobacillus sp. Y412MC52] gi|261377046|gb|ACX79789.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61] gi|317113125|gb|ADU95617.1| type III secretion exporter [Geobacillus sp. Y412MC52] Length = 98 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 +T PT A +RY ++ +P++VA+G +A+K+ ++A +H+IPI E+P L ++L Q+ Sbjct: 14 MTGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDRIPPQLYAVIA 85 >gi|163794135|ref|ZP_02188108.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199] gi|159180749|gb|EDP65268.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199] Length = 109 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333 ++AL + + AP ++AKG ++A+++ ++A+++++ + ++P LA+ + + V ++ Sbjct: 17 QVSIALSHDIGSDQAPTVIAKGYGVLAEQILRLAFDNDVKVRKDPDLAQ-ILEVVDVDCE 75 Query: 334 IPPVFYKAVAQLIYKIYH 351 IP + AVA+++ +Y Sbjct: 76 IPVQAFAAVAEILTYVYR 93 >gi|170696027|ref|ZP_02887164.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] gi|170139019|gb|EDT07210.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M] Length = 123 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP ++AKG ++A + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDANGGDPAPRVIAKGYGMLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPQLYQAVAELLAWLHRLE 86 >gi|167628834|ref|YP_001679333.1| flagellar biosynthesis protein, putative [Heliobacterium modesticaldum Ice1] gi|167591574|gb|ABZ83322.1| flagellar biosynthesis protein, putative [Heliobacterium modesticaldum Ice1] Length = 100 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 ALRY + APV++A+G+ +A+K+ ++A E NIPI E+P L +L + + IPP Sbjct: 21 ALRYDPNSD-APVVIAQGKGHLARKIIEMAKEKNIPIQEDPLLVENLI-DMDLGDTIPPQ 78 Query: 338 FYKAVAQLIYKI 349 Y VA+++ I Sbjct: 79 LYLVVAEILLMI 90 >gi|119775405|ref|YP_928145.1| FlhB domain-containing protein [Shewanella amazonensis SB2B] gi|119767905|gb|ABM00476.1| FlhB domain protein [Shewanella amazonensis SB2B] Length = 100 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL Y N AP + AKG+ L+A+++ +A E I I E+P+LA L + +N +I Sbjct: 7 IAVALSYD--GNGAPKVTAKGEALLAEEIIALARECGIHIHEDPALANFL-TMMELNESI 63 Query: 335 PPVFYKAVAQLIYKIY 350 P Y +A+L+ +Y Sbjct: 64 PKELYVLIAELLSFVY 79 >gi|94314177|ref|YP_587386.1| putative flagellar protein [Cupriavidus metallidurans CH34] gi|93358029|gb|ABF12117.1| putative flagellar protein [Cupriavidus metallidurans CH34] Length = 91 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + E AP +VAKG + A+ + A E + + P+L +L QV ++S IP Sbjct: 9 AVALSYEEGE-KAPRVVAKGYGVTAESIIARAQEAGVYVHNSPALV-NLLMQVDMDSQIP 66 Query: 336 PVFYKAVAQLIYKIYH 351 P Y AVAQL+ ++ Sbjct: 67 PQLYLAVAQLLAWLHQ 82 >gi|312879569|ref|ZP_07739369.1| type III secretion exporter [Aminomonas paucivorans DSM 12260] gi|310782860|gb|EFQ23258.1| type III secretion exporter [Aminomonas paucivorans DSM 12260] Length = 94 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + APV+VA G+ ++A+++ +IA E IP+ E+ +L + + + IP Sbjct: 10 AAALRYEEGHESAPVVVASGKGVLAERIVEIAREAQIPVVEDAALVSA-LLALELGEEIP 68 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+AVA+++ +Y Sbjct: 69 PELYQAVARVLVFVYDL 85 >gi|186477673|ref|YP_001859143.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815] gi|184194132|gb|ACC72097.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815] Length = 112 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y ++AP +VAKG L+A + + A E + + E P + SL QV ++S I Sbjct: 9 AAALVYDSHGHDEAPRVVAKGYGLVADMIVQRAKEAGLYVHESPDMV-SLLMQVDLDSRI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPRLYQAVAELLAWLHRLE 86 >gi|253681686|ref|ZP_04862483.1| flagella-associated protein [Clostridium botulinum D str. 1873] gi|253561398|gb|EES90850.1| flagella-associated protein [Clostridium botulinum D str. 1873] Length = 90 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP++ A G IA K+ + A ++ +P+ LA L V + S+IP Sbjct: 9 AAALKYELNYD-APIVSAAGMGHIADKIVEEAKKNEVPVVYNKELAD-LLTNVDVGSSIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|148270251|ref|YP_001244711.1| FlhB domain-containing protein [Thermotoga petrophila RKU-1] gi|170288949|ref|YP_001739187.1| FlhB domain-containing protein [Thermotoga sp. RQ2] gi|281412554|ref|YP_003346633.1| FlhB domain protein [Thermotoga naphthophila RKU-10] gi|147735795|gb|ABQ47135.1| FlhB domain protein [Thermotoga petrophila RKU-1] gi|170176452|gb|ACB09504.1| FlhB domain protein [Thermotoga sp. RQ2] gi|281373657|gb|ADA67219.1| FlhB domain protein [Thermotoga naphthophila RKU-10] Length = 86 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP +VAKG +A+++ ++A + IPI E P + L + + + S IP Sbjct: 9 AVALKYDPSRTSAPEVVAKGVGEVAERIIEVAKRYGIPIEERPDIIDDLLR-LDLFSEIP 67 Query: 336 PVFYKAVAQLIYKIYH 351 Y +A++ + Sbjct: 68 EEMYLVIAEIYAFLKR 83 >gi|56421679|ref|YP_148997.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426] gi|56381521|dbj|BAD77429.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426] Length = 98 Score = 81.0 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY ++ +P++VA+G +A+K+ ++A +H++PI E+P L ++L Q+ Sbjct: 14 MNGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHVPIQEDPLLVQNLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDRIPPQLYAVIA 85 >gi|307731337|ref|YP_003908561.1| type III secretion exporter [Burkholderia sp. CCGE1003] gi|307585872|gb|ADN59270.1| type III secretion exporter [Burkholderia sp. CCGE1003] Length = 123 Score = 80.6 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQGGDAAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPQLYQAVAELLAWLHRLE 86 >gi|91785606|ref|YP_560812.1| flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400] gi|91689560|gb|ABE32760.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400] Length = 119 Score = 80.6 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q+ + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPQLYQAVAELLAWLHRLE 86 >gi|326791379|ref|YP_004309200.1| type III secretion exporter [Clostridium lentocellum DSM 5427] gi|326542143|gb|ADZ84002.1| type III secretion exporter [Clostridium lentocellum DSM 5427] Length = 94 Score = 80.6 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q + +AP +VA G +A+ + + A +H++P++E+ LA ++ ++ + IP Sbjct: 9 AVALSY-QEDMNAPTIVASGSGKVAENILEEAKKHHVPVYEDKKLA-TILAELQVGEQIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y+ VA+++ + Sbjct: 67 TELYELVAKVLVFV 80 >gi|309703218|emb|CBJ02553.1| type III secretion system protein [Escherichia coli ETEC H10407] Length = 130 Score = 80.6 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60 Query: 318 PSLARSLFKQVPINSAI 334 LAR ++ + Sbjct: 61 KKLARKIYATHRRYDYV 77 >gi|78776339|ref|YP_392654.1| FlhB domain-containing protein [Sulfurimonas denitrificans DSM 1251] gi|78496879|gb|ABB43419.1| FlhB domain protein [Sulfurimonas denitrificans DSM 1251] Length = 83 Score = 80.6 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + AP +VAKGQ A+ + KIA HN+PI ++ L L +V ++ +P Sbjct: 4 AAALRYDVEKEGAPRVVAKGQGRSAENIIKIAQLHNLPIRKDEDLIE-LLSKVELDKEVP 62 Query: 336 PVFYKAVAQLIYKIYH 351 YKAVA++ IY Sbjct: 63 SALYKAVAEVFSFIYK 78 >gi|296157427|ref|ZP_06840262.1| type III secretion exporter [Burkholderia sp. Ch1-1] gi|295892199|gb|EFG71982.1| type III secretion exporter [Burkholderia sp. Ch1-1] Length = 119 Score = 80.6 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q+ + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPQLYQAVAELLAWLHRLE 86 >gi|307546936|ref|YP_003899415.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581] gi|307218960|emb|CBV44230.1| K04061 flagellar biosynthesis protein [Halomonas elongata DSM 2581] Length = 90 Score = 80.6 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y E AP +VA+G +A+++ + A +H I + + P L L Q+ ++ AIP Sbjct: 10 AVGLAYGDDET-APKVVARGYGELAERIVEQAKQHGIHVHDAPELV-GLLMQLDLDEAIP 67 Query: 336 PVFYKAVAQLIYKI 349 P Y+ VA+L+ + Sbjct: 68 PELYRIVAELLVWL 81 >gi|256024635|ref|ZP_05438500.1| surface presentation of antigens protein SpaS [Escherichia sp. 4_1_40B] Length = 130 Score = 80.2 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60 Query: 318 PSLARSLFKQVPINSAI 334 LAR ++ + Sbjct: 61 KKLARKIYATHRRYDYV 77 >gi|291280386|ref|YP_003497221.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans SSM1] gi|290755088|dbj|BAI81465.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans SSM1] Length = 90 Score = 80.2 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340 Y ++ AP LVAKGQ LIA+K+ + A EH + I E+P + + + + IP Y+ Sbjct: 12 YDANKDKAPKLVAKGQGLIAEKIIEKAKEHGVFIKEDPDIVE-ILSTLDLFEEIPDKLYQ 70 Query: 341 AVAQLIYKIYH 351 A+A ++ ++Y Sbjct: 71 AIANILVEVYK 81 >gi|332305476|ref|YP_004433327.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172805|gb|AEE22059.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5] Length = 110 Score = 80.2 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 276 ALALRYIQTEN-DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL++ + +N +AP +VAKG +A ++ +A + + I E+P L+ L + + I Sbjct: 15 AVALKHNEGDNKNAPQVVAKGFGELADEIIALAKQSGVLIHEDPYLSEFL-ASLDLGQEI 73 Query: 335 PPVFYKAVAQLIYKIY 350 P Y +A+LI Y Sbjct: 74 PEELYHVIAELISFSY 89 >gi|196249409|ref|ZP_03148107.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp. G11MC16] gi|196211166|gb|EDY05927.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp. G11MC16] Length = 98 Score = 80.2 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY +T AP +VA+G +A+K+ ++A +H++ I E+P L + L Q+ Sbjct: 14 MNGPT--AAVIRYDETSGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDRIPPQLYAVIA 85 >gi|83720874|ref|YP_440763.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia thailandensis E264] gi|167617543|ref|ZP_02386174.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia thailandensis Bt4] gi|257140587|ref|ZP_05588849.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia thailandensis E264] gi|83654699|gb|ABC38762.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia thailandensis E264] Length = 108 Score = 80.2 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A L Y + + AP +VAKG L+A+++ + A + + + P + SL QV +++ I Sbjct: 9 AAVLAYDAKGGDSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ +Y + Sbjct: 68 PPQLYQAVAELLAWLYALE 86 >gi|331268716|ref|YP_004395208.1| flagella-associated protein [Clostridium botulinum BKT015925] gi|329125266|gb|AEB75211.1| flagella-associated protein [Clostridium botulinum BKT015925] Length = 90 Score = 80.2 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y + AP++ A G IA K+ + A ++ +P+ LA L V + S+IP Sbjct: 9 AAALKYELNYD-APIVSAAGMGRIADKIIEEAKKNEVPVVYNKELAD-LLTNVDVGSSIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I I Sbjct: 67 EELYNAVAEVIAYI 80 >gi|291562062|emb|CBL40878.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [butyrate-producing bacterium SS3/4] Length = 103 Score = 80.2 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ APV+VA G +A+K+ + A + +P++E+ SLA +L ++ + +A+P Sbjct: 12 AVALQYSPEKDTAPVIVASGMGYMAEKITEAARKSGVPVYEDDSLA-TLLSRLQLGAAVP 70 Query: 336 PVFYKAVAQLIYKIY 350 Y+A+ ++ IY Sbjct: 71 EELYQAIIEI--YIY 83 >gi|238028882|ref|YP_002913113.1| putative flagellar protein FhlB [Burkholderia glumae BGR1] gi|237878076|gb|ACR30409.1| Putative flagellar protein FhlB [Burkholderia glumae BGR1] Length = 129 Score = 80.2 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG L+A+ + A E + + P + SL QV ++ I Sbjct: 10 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARESGLYVHTAPEMV-SLLMQVDLDDRI 68 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ +Y + Sbjct: 69 PPALYRAVAELLAWLYALE 87 >gi|150021423|ref|YP_001306777.1| flagellar protein FhlB-like protein [Thermosipho melanesiensis BI429] gi|149793944|gb|ABR31392.1| cytoplasmic domain of flagellar protein FhlB-like protein [Thermosipho melanesiensis BI429] Length = 89 Score = 80.2 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 ++ T+ A+AL+Y + P +VAKG+ +A+K+ ++A + +PI + LFK Sbjct: 1 MVYTSREKLAVALKYNPKTDFVPFVVAKGKEEVAEKIMELAKKSGVPIVRSSKIVGELFK 60 Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353 + + IP Y +A++I I +K Sbjct: 61 -LNVLEEIPEKMYVVIAEIIAFIQSQK 86 >gi|153956205|ref|YP_001396970.1| hypothetical protein CKL_3609 [Clostridium kluyveri DSM 555] gi|219856530|ref|YP_002473652.1| hypothetical protein CKR_3187 [Clostridium kluyveri NBRC 12016] gi|146349063|gb|EDK35599.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219570254|dbj|BAH08238.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 88 Score = 80.2 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y T +AP++ A G IA + A E N+PI + L +L V + +IP Sbjct: 7 AVALKYEPT-YEAPMVTAAGIGQIADNILNKARESNVPIVYDRELT-NLLSNVDVGDSIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y VA++I + Sbjct: 65 VELYDVVAKVIAYV 78 >gi|87119456|ref|ZP_01075353.1| FlhB domain protein [Marinomonas sp. MED121] gi|86164932|gb|EAQ66200.1| FlhB domain protein [Marinomonas sp. MED121] Length = 80 Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKG LIA+++ ++A E+NI + + P L L + + IP Sbjct: 5 AIALNYDF--HGAPTITAKGSGLIAERIMQVAEENNIILHKSPELVEVL-GHLELGDEIP 61 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y AVA++I + K Sbjct: 62 EALYLAVAEIIAFAHSLK 79 >gi|146297151|ref|YP_001180922.1| flagellar protein FhlB-like protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410727|gb|ABP67731.1| cytoplasmic domain of flagellar protein FhlB-like protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 94 Score = 79.9 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + AP ++AKGQ L+A+++ + A E NIPI+ + +A LF + + IP Sbjct: 9 AVAIKYD-IKEIAPKVIAKGQGLVAERILEKAKEKNIPIYHDQYIAERLF-NLELQQYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y+ VAQ++ I Sbjct: 67 EDLYEVVAQILVFI 80 >gi|289523587|ref|ZP_06440441.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503279|gb|EFD24443.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 100 Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY + + AP ++A G+ IA+K+ A + IP+ E+ L L V + IP Sbjct: 13 AAALRYDKKLDSAPRVIASGRGWIAEKIIDEARKRGIPLVEDSLLVSVLLG-VNLGEEIP 71 Query: 336 PVFYKAVAQLIYKI 349 Y AVA+++ + Sbjct: 72 EEAYLAVARILVFL 85 >gi|85712296|ref|ZP_01043347.1| Uncharacterized conserved protein, related to C-terminal FlhB domain [Idiomarina baltica OS145] gi|85693923|gb|EAQ31870.1| Uncharacterized conserved protein, related to C-terminal FlhB domain [Idiomarina baltica OS145] Length = 91 Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y +AP ++AKG + +A+++ ++A H + + E+P L+ SL ++ + IP Sbjct: 9 AIGLSYD--GLNAPQVIAKGFDELAEEIIEVAKAHGVMVHEDPMLSDSL-ARLNVGEEIP 65 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI Y Sbjct: 66 RELYVLIAELIAFSY 80 >gi|167579446|ref|ZP_02372320.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia thailandensis TXDOH] Length = 108 Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A L Y + + AP +VAKG L+A+++ + A + + + P + SL QV +++ I Sbjct: 9 AAVLAYDAKGGDSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ +Y + Sbjct: 68 PPQLYQAVAELLAWLYALE 86 >gi|127512324|ref|YP_001093521.1| FlhB domain-containing protein [Shewanella loihica PV-4] gi|126637619|gb|ABO23262.1| FlhB domain protein [Shewanella loihica PV-4] Length = 118 Score = 79.5 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PT A ALRY AP + AKG++L+A+++ IA E I I ++ +L+ L +++ I Sbjct: 23 PTQ-AAALRYDGKL--APQITAKGEDLVAEEIIAIAKEAGIYIHQDANLSNFL-QKLEIG 78 Query: 332 SAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 79 EEIPKELYLLIAELIAFVY 97 >gi|157961216|ref|YP_001501250.1| FlhB domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846216|gb|ABV86715.1| FlhB domain protein [Shewanella pealeana ATCC 700345] Length = 102 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP + AKG++ +A+++ +A + IPI ++ L L +++ + IP Sbjct: 10 AVALSYQPGT--APKVSAKGEDRLAEEIIALAQQAGIPIHQDEYLCDFL-QRLEVGDEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI +Y Sbjct: 67 SELYLLIAELIAFVY 81 >gi|221199692|ref|ZP_03572735.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2M] gi|221208703|ref|ZP_03581703.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2] gi|221215527|ref|ZP_03588490.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD1] gi|221164515|gb|EED96998.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD1] gi|221171514|gb|EEE03961.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2] gi|221179931|gb|EEE12335.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia multivorans CGD2M] Length = 105 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG +A+ + A E + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKEAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYAL 85 >gi|167568373|ref|ZP_02361247.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis C6786] Length = 107 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A L Y + + AP +VAKG L+A+++ + A + + + P + SL QV +++ I Sbjct: 9 AAVLAYDAKGGDAAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ +Y + Sbjct: 68 PPQLYQAVAELLAWLYALE 86 >gi|167561155|ref|ZP_02354071.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis EO147] Length = 105 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A L Y + + AP +VAKG L+A+++ + A + + + P + SL QV +++ I Sbjct: 9 AAVLAYDAKGGDAAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ +Y + Sbjct: 68 PPQLYQAVAELLAWLYALE 86 >gi|119476289|ref|ZP_01616640.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine gamma proteobacterium HTCC2143] gi|119450153|gb|EAW31388.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine gamma proteobacterium HTCC2143] Length = 113 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 P A +L+Y + AP++ A G +A+++ IA +H IP+FE +L L + + Sbjct: 9 PEKKAASLQYD--GSGAPIVSAAGSGEVAEQIIAIARQHEIPLFENEALLE-LLVNIGVG 65 Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353 IP Y +AQ+I Y + Sbjct: 66 EEIPESLYLCIAQVIAFAYKIQ 87 >gi|53724870|ref|YP_104758.1| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei ATCC 23344] gi|67641500|ref|ZP_00440277.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei GB8 horse 4] gi|167001486|ref|ZP_02267281.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei PRL-20] gi|254174894|ref|ZP_04881555.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei ATCC 10399] gi|254359693|ref|ZP_04975964.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei 2002721280] gi|262193313|ref|YP_001082911.2| flagellar biosynthetic protein FlhB domain-containing protein [Burkholderia mallei NCTC 10247] gi|52428293|gb|AAU48886.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei ATCC 23344] gi|148028907|gb|EDK86839.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei 2002721280] gi|160695939|gb|EDP85909.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei ATCC 10399] gi|238522443|gb|EEP85887.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei GB8 horse 4] gi|243062693|gb|EES44879.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei PRL-20] gi|261825984|gb|ABN01805.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei NCTC 10229] gi|261835037|gb|ABO04245.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia mallei NCTC 10247] Length = 95 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 279 LRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 L Y + + AP +VAKG L+A+++ + A + + + P + SL QV +++ IPP Sbjct: 2 LAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQ 60 Query: 338 FYKAVAQLIYKIYHKK 353 Y+AVA+L+ +Y + Sbjct: 61 LYQAVAELLAWLYALE 76 >gi|330818617|ref|YP_004362322.1| Flagellar protein FhlB [Burkholderia gladioli BSR3] gi|327371010|gb|AEA62366.1| Flagellar protein FhlB [Burkholderia gladioli BSR3] Length = 118 Score = 79.1 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG L+A+ + A E + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARAREAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ +Y + Sbjct: 68 PPALYQAVAELLAWLYALE 86 >gi|312622764|ref|YP_004024377.1| type iii secretion exporter [Caldicellulosiruptor kronotskyensis 2002] gi|312203231|gb|ADQ46558.1| type III secretion exporter [Caldicellulosiruptor kronotskyensis 2002] Length = 92 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y E+ AP ++AKG+ +A+++ + A + +IP++E+ +A LF + + IP Sbjct: 9 AVAIKYDL-EDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVAEKLF-NLELQEYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y+ +AQ++ I Sbjct: 67 EDLYEVIAQILVFI 80 >gi|255528146|ref|ZP_05394973.1| conserved hypothetical protein [Clostridium carboxidivorans P7] gi|255508159|gb|EET84572.1| conserved hypothetical protein [Clostridium carboxidivorans P7] Length = 87 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY Q +APV+ A G +A K+ + A + N+PI + L L V + +IP Sbjct: 7 AAALRYEQG-YEAPVVTAAGMGYVADKIIENAEKANVPIVYDKELTD-LLSSVDVGDSIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I + Sbjct: 65 FELYDAVAKVIAYV 78 >gi|226944518|ref|YP_002799591.1| flagellar protein [Azotobacter vinelandii DJ] gi|226719445|gb|ACO78616.1| flagellar protein [Azotobacter vinelandii DJ] Length = 94 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ALAL Y + AP +VAKG +A+++ A+ +P+ P L L QV +++ IP Sbjct: 11 ALALSY-AEGDAAPRVVAKGYGRLAERIVAEAHRQGVPVHAAPELV-GLLMQVDLDAQIP 68 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+ VA+L+ Y + Sbjct: 69 PQLYQVVAELLVWAYGLE 86 >gi|149194925|ref|ZP_01872018.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus TB-2] gi|149134846|gb|EDM23329.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus TB-2] Length = 92 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ALRY E+ AP ++AKG+ IA+K+ + A E +IP+F+ L SL K N IP Sbjct: 9 AAALRYKAYEDLAPKVIAKGKGEIAEKIIQKAKEFDIPLFQNEELVDSLLKID--NDTIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 P YKAV ++ +Y + Sbjct: 67 PELYKAVVEVFIWLYKME 84 >gi|222528969|ref|YP_002572851.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii DSM 6725] gi|222455816|gb|ACM60078.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii DSM 6725] Length = 92 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y E+ AP ++AKG+ +A+++ + A + +IP++E+ + LF + + IP Sbjct: 9 AVAIKYDL-EDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVVEKLF-NLELQEYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y+ VAQ++ I Sbjct: 67 EDLYEVVAQILVFI 80 >gi|83309712|ref|YP_419976.1| flagellar protein FhlB cytoplasmic domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82944553|dbj|BAE49417.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Magnetospirillum magneticum AMB-1] Length = 117 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL P + A G+ +A+++ ++A+ H + + +P LA L V +++ IP Sbjct: 29 VALADDPDHPGLPTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTVIPV 87 Query: 337 VFYKAVAQLIYKIYH 351 + AVA+++ +Y Sbjct: 88 EAFVAVAEILAYVYR 102 >gi|213422289|ref|ZP_03355355.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 103 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 45/97 (46%) Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 R + D + I+ + L +A ++P + ++ + S ++ + + ++P F Sbjct: 7 HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKF 66 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164 +++ GIKR++S +K+ +K LVG + Sbjct: 67 SKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGF 103 >gi|218672785|ref|ZP_03522454.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56] Length = 124 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+++D D+KTEAP++KK DA +GN P SRE S+F++ILA IYL+FF + + Sbjct: 1 MADDD-KDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGAHER 59 Query: 61 DLHVLLASAT 70 + L ++ Sbjct: 60 NAARYLQASL 69 >gi|138896706|ref|YP_001127159.1| flagellar biosynthesis, FlhS-like protein [Geobacillus thermodenitrificans NG80-2] gi|134268219|gb|ABO68414.1| Flagellar biosynthesis, FlhS-related protein [Geobacillus thermodenitrificans NG80-2] Length = 98 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY + AP +VA+G +A+K+ ++A +H++ I E+P L + L Q+ Sbjct: 14 MNGPT--AAVIRYNEASGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70 Query: 329 PINSAIPPVFYKAVA 343 + IPP Y +A Sbjct: 71 DLGDCIPPQLYAVIA 85 >gi|307718745|ref|YP_003874277.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM 6192] gi|306532470|gb|ADN02004.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM 6192] Length = 104 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y AP ++AKG+ A + +A EH IP+ E +AR + + +P Sbjct: 16 AVAMKYTPEL-PAPFVIAKGRGKTADLILDLAREHRIPVVEHR-IAREGYDLFLPGTYVP 73 Query: 336 PVFYKAVAQLIYKIY 350 Y+ VA + +Y Sbjct: 74 EDLYEVVATIFAFVY 88 >gi|323527687|ref|YP_004229840.1| type III secretion exporter [Burkholderia sp. CCGE1001] gi|323384689|gb|ADX56780.1| type III secretion exporter [Burkholderia sp. CCGE1001] Length = 122 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAHGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ ++ + Sbjct: 68 PPQLYQAVAELLAWLHRLE 86 >gi|187925735|ref|YP_001897377.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans PsJN] gi|187716929|gb|ACD18153.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans PsJN] Length = 119 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y Q + AP ++AKG ++A+ + + A E + + E P + SL QV +++ I Sbjct: 9 AAALVYDAQGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+++ ++ + Sbjct: 68 PPQLYQAVAEMLAWLHRLE 86 >gi|115353155|ref|YP_774994.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD] gi|115283143|gb|ABI88660.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD] Length = 106 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYSL 85 >gi|317128463|ref|YP_004094745.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] gi|315473411|gb|ADU30014.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522] Length = 99 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 I PT A +RY + + P +VA+G+ +A+K+ +A E+ IP+ E+ L SL + Sbjct: 15 INGPT--AAVIRYDEASGEEPKVVAQGKGHVAQKILALAKENGIPMEEDTHLLESLL-DM 71 Query: 329 PINSAIPPVFYKAVAQLIYKI 349 + IPP Y +A+++ I Sbjct: 72 DLGENIPPQLYSVMAEILLFI 92 >gi|161526225|ref|YP_001581237.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC 17616] gi|189349061|ref|YP_001944689.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC 17616] gi|160343654|gb|ABX16740.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC 17616] gi|189333083|dbj|BAG42153.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC 17616] Length = 105 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG +A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYAL 85 >gi|217031730|ref|ZP_03437234.1| hypothetical protein HPB128_155g43 [Helicobacter pylori B128] gi|298737133|ref|YP_003729663.1| flagellar biosynthesis protein [Helicobacter pylori B8] gi|216946577|gb|EEC25177.1| hypothetical protein HPB128_155g43 [Helicobacter pylori B128] gi|298356327|emb|CBI67199.1| flagellar biosynthesis protein [Helicobacter pylori B8] Length = 90 Score = 78.3 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A+AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAVALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ IP Y++V Q+ + Sbjct: 60 LDCTIPEELYESVVQVFLWL 79 >gi|313903321|ref|ZP_07836713.1| type III secretion exporter [Thermaerobacter subterraneus DSM 13965] gi|313466409|gb|EFR61931.1| type III secretion exporter [Thermaerobacter subterraneus DSM 13965] Length = 174 Score = 78.3 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 P A ALR+ + AP +VA G +A+ + + A E +P P LA L +VP Sbjct: 16 PPQRAAAALRFDPGTDPAPRVVAAGFGTMAEAILRRAREAGVPEVTSP-LAPVL-ARVPP 73 Query: 331 NSAIPPVFYKAVAQLIY 347 AIP ++ VA+++ Sbjct: 74 GQAIPAALFEVVARIMA 90 >gi|167835063|ref|ZP_02461946.1| putative flagellar biosynthesis protein [Burkholderia thailandensis MSMB43] Length = 108 Score = 78.3 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A L Y + + AP +VAKG L+A+++ + A + + + P + SL QV +++ I Sbjct: 9 AAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA+L+ +Y + Sbjct: 68 PPQLYRAVAELLAWLYALE 86 >gi|300870471|ref|YP_003785342.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli 95/1000] gi|300688170|gb|ADK30841.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli 95/1000] Length = 86 Score = 78.3 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + ++AP++++KG+ L+AK+M +IA ++ +PI + + L + I IP Sbjct: 8 AVALLYEREIHNAPIVISKGEKLLAKRMIEIAKKNKVPIVSDEDTVKELMH-LEIGEEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+AV+ ++ +Y K Sbjct: 67 YSVYEAVSIILKYVYKLK 84 >gi|134297235|ref|YP_001120970.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4] gi|134140392|gb|ABO56135.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4] Length = 105 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG L+A + + A + + + P + SL QV ++ I Sbjct: 7 AAALVYDPKGGDAAPRVVAKGYGLVADMIVERARDAGLYVHTAPEMV-SLLMQVDLDDRI 65 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 66 PPQLYQAVADLLAWLYAL 83 >gi|209964217|ref|YP_002297132.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum centenum SW] gi|209957683|gb|ACI98319.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum centenum SW] Length = 104 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ALR+ P +VA G +A+++ ++A+ + + E+ LA + + ++S I Sbjct: 12 VAVALRHQPGGESLPRIVASGHGAVAEQILEMAFAAGVKVREDADLAE-ILSALDLDSEI 70 Query: 335 PPVFYKAVAQLIYKIYH 351 P AVA+++ +Y Sbjct: 71 PLEAIAAVAEILAYVYR 87 >gi|171317301|ref|ZP_02906498.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5] gi|171097562|gb|EDT42399.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5] Length = 106 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYSL 85 >gi|78067877|ref|YP_370646.1| putative flagellar protein FhlB [Burkholderia sp. 383] gi|77968622|gb|ABB10002.1| putative flagellar protein FhlB [Burkholderia sp. 383] Length = 105 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG +A+ + A++ + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYSL 85 >gi|217033813|ref|ZP_03439238.1| hypothetical protein HP9810_877g17 [Helicobacter pylori 98-10] gi|216943711|gb|EEC23154.1| hypothetical protein HP9810_877g17 [Helicobacter pylori 98-10] gi|317178297|dbj|BAJ56086.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori F16] gi|317179776|dbj|BAJ57564.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori F30] Length = 90 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A+AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAVALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|158321501|ref|YP_001514008.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs] gi|158141700|gb|ABW20012.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs] Length = 98 Score = 77.9 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y + APV+ A G ++A K+ + E+ + I+E+ L + L Q + + IP Sbjct: 10 AVAIKYDVENDRAPVITASGMGVVADKIIEKGMENEVAIYEDERLVKELI-QFKVGTEIP 68 Query: 336 PVFYKAVAQLIYKI 349 P Y+ VAQ++ I Sbjct: 69 PELYEIVAQVLVFI 82 >gi|312127964|ref|YP_003992838.1| type iii secretion exporter [Caldicellulosiruptor hydrothermalis 108] gi|311777983|gb|ADQ07469.1| type III secretion exporter [Caldicellulosiruptor hydrothermalis 108] Length = 92 Score = 77.5 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E+ AP +VAKG+ +A+K+ + A + +IP++E+ ++A LF + + IP Y+ VAQ Sbjct: 17 EDIAPKVVAKGKGYVAEKIVEKAKQEDIPVYEDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75 Query: 345 LIYKI 349 ++ I Sbjct: 76 ILVFI 80 >gi|160939648|ref|ZP_02086996.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC BAA-613] gi|158437439|gb|EDP15203.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC BAA-613] Length = 130 Score = 77.5 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY E+ +PV++A G +A+ + IA + IP+F++ S A SL + + S IP Sbjct: 9 AVALRYNVDEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGSNIP 67 Query: 336 PVFYKAVAQL 345 Y+ VA + Sbjct: 68 VELYEVVAAI 77 >gi|172057901|ref|YP_001814361.1| hypothetical protein Exig_1892 [Exiguobacterium sibiricum 255-15] gi|171990422|gb|ACB61344.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15] Length = 86 Score = 77.5 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP +VAKG +A+++ + A +HNIPI E+ +L +L V ++ IP Sbjct: 4 AIALSYE-EQMQAPKVVAKGSERVAERILEEALQHNIPIREDATLI-TLLNTVQVSEQIP 61 Query: 336 PVFYKAVAQLIYKIYHK 352 Y +A+L +Y Sbjct: 62 NELYGVIAELFAFLYQL 78 >gi|150388629|ref|YP_001318678.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF] gi|149948491|gb|ABR47019.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF] Length = 96 Score = 77.5 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + AP + A GQ ++A+++ + A E+++ I+ + L + L + + + IP Sbjct: 10 AIALQYDVERDHAPRITAAGQGMMAERILERAEENDVAIYHDERLVKELI-EFKVGTEIP 68 Query: 336 PVFYKAVAQLIYKI 349 Y+ VAQ++ I Sbjct: 69 TELYEVVAQVLVFI 82 >gi|262360425|gb|ACY57146.1| type III secretion apparatus protein [Yersinia pestis D106004] Length = 139 Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 K E P+ K++++A +G S E + ++A +IY L YS+ L+ S Sbjct: 4 EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59 Query: 69 ATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 + + + ++ + + ++ +V+ ++ I + + Q P+L V Sbjct: 60 SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG 119 Query: 128 KRVSLREGIKR 138 +R++ + + Sbjct: 120 ERITPFKMLNN 130 >gi|325526461|gb|EGD04041.1| putative flagellar protein FhlB [Burkholderia sp. TJI49] Length = 105 Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG +A+ + A++ + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYAL 85 >gi|312878031|ref|ZP_07737969.1| flagellar protein FhlB-like protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795183|gb|EFR11574.1| flagellar protein FhlB-like protein [Caldicellulosiruptor lactoaceticus 6A] Length = 94 Score = 77.2 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E+ AP +VAKG+ +A+K+ + A + +IP++E+ S+A LF + + IP Y+ VAQ Sbjct: 17 EDIAPKIVAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVVAQ 75 Query: 345 LIYKI 349 ++ I Sbjct: 76 ILVFI 80 >gi|170699624|ref|ZP_02890662.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10] gi|170135440|gb|EDT03730.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10] Length = 106 Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYAL 85 >gi|212640409|ref|YP_002316929.1| hypothetical protein Aflv_2591 [Anoxybacillus flavithermus WK1] gi|212561889|gb|ACJ34944.1| Uncharacterized protein containing cytoplasmic domain of flagellar protein FhlB [Anoxybacillus flavithermus WK1] Length = 95 Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A +RY Q + AP +VA G+ +A+K+ ++A ++ +PI ++ +L + L + + IP Sbjct: 17 AAVIRYEQG-DKAPTVVAHGRGYVAEKIIELAKQNGVPIEQDAALVQHLL-DLDLGDTIP 74 Query: 336 PVFYKAVAQLI 346 P Y +A+++ Sbjct: 75 PQLYAVIAEIL 85 >gi|172062010|ref|YP_001809662.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6] gi|171994527|gb|ACB65446.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6] Length = 106 Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG L+A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYAL 85 >gi|556364|gb|AAA50308.1| flhB [Proteus mirabilis] Length = 74 Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 IP+ E P LAR+L++ I AIP Y AVA+++ +Y + Sbjct: 1 IPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLR 42 >gi|217077929|ref|YP_002335647.1| flagellar biosynthesis [Thermosipho africanus TCF52B] gi|217037784|gb|ACJ76306.1| flagellar biosynthesis [Thermosipho africanus TCF52B] Length = 75 Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL+Y + P ++AKG+ +AKK+ +IA + +PI + L L+K + + IP Sbjct: 1 MALKYDPKVDFVPFVIAKGKEEVAKKILEIAKKSGVPIVKSSELVDELYK-LKVLEEIPK 59 Query: 337 VFYKAVAQLIYKI 349 Y AVA++I + Sbjct: 60 KLYLAVAEIIVFL 72 >gi|170726000|ref|YP_001760026.1| FlhB domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811347|gb|ACA85931.1| FlhB domain protein [Shewanella woodyi ATCC 51908] Length = 104 Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL + N+AP + AKG LIA+++ +A E I I + L+ L + + + Sbjct: 9 TQQAVALGFD--GNNAPKVTAKGSGLIAEEIISVAKEAGIHIHKNADLSNFL-QNLELGD 65 Query: 333 AIPPVFYKAVAQLIYKIY 350 IP Y +A++I Y Sbjct: 66 EIPKELYLLIAEIIAFAY 83 >gi|157376171|ref|YP_001474771.1| FlhB domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318545|gb|ABV37643.1| FlhB domain protein [Shewanella sediminis HAW-EB3] Length = 111 Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL + P + AKG L+A+++ +A E + I + P L+ L +++ + IP Sbjct: 19 AVALGFDGQHT--PTVTAKGTGLVAEEIIALAEEAGVHIHKNPHLSDFL-QRLELGEEIP 75 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI +Y Sbjct: 76 KELYFLIAELIAFVY 90 >gi|312793166|ref|YP_004026089.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180306|gb|ADQ40476.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii 177R1B] Length = 94 Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 E+ AP ++AKG+ +A+K+ + A + +IP++E+ S+A LF + + IP Y+ VAQ Sbjct: 17 EDIAPKIIAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVVAQ 75 Query: 345 LIYKI 349 ++ I Sbjct: 76 ILVFI 80 >gi|288958046|ref|YP_003448387.1| flagellar protein FhlB cytoplasmic domain-containing protein [Azospirillum sp. B510] gi|288910354|dbj|BAI71843.1| flagellar protein FhlB cytoplasmic domain-containing protein [Azospirillum sp. B510] Length = 119 Score = 76.4 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+AL+Y P +VA G+ +A+++ ++A+ + + + E+ L + + ++S I Sbjct: 24 VAVALKYQLGTETLPRIVATGKGTVAEQILELAFANGVKVREDADLVE-ILSAIEVDSDI 82 Query: 335 PPVFYKAVAQLIYKIYH 351 P AVA+++ +Y Sbjct: 83 PVEAIAAVAEILAHVYR 99 >gi|120598277|ref|YP_962851.1| FlhB domain-containing protein [Shewanella sp. W3-18-1] gi|120558370|gb|ABM24297.1| FlhB domain protein [Shewanella sp. W3-18-1] Length = 103 Score = 76.4 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N T A+AL Y + AP +VA G+ LIA+++ +A E + I ++ L+ L + + + Sbjct: 6 NKTKQAVALSYDRK--HAPKIVATGEGLIAEEIIALAKESGVYIHQDAHLSNFL-RLLEL 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 63 GEEIPKELYILIAELIAFVY 82 >gi|308062858|gb|ADO04746.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori Cuz20] Length = 90 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ IP Y++V Q+ + Sbjct: 60 LDCTIPEELYESVVQVFLWL 79 >gi|320536637|ref|ZP_08036655.1| FlhB domain protein [Treponema phagedenis F0421] gi|320146513|gb|EFW38111.1| FlhB domain protein [Treponema phagedenis F0421] Length = 104 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 + T + AL Y + AP++VAKG+ IA+K+ +IA +H++PI ++ LA L +Q Sbjct: 1 MTKKKTPCSAALSYTLG-SSAPIIVAKGKGQIAEKILEIADKHSVPIIQDTILAEILSEQ 59 Query: 328 VPINSAIPPVFYKAVAQLIYKI 349 I + IP Y+AVA + + Sbjct: 60 -QIGACIPDETYQAVAAIFAFL 80 >gi|167585157|ref|ZP_02377545.1| putative flagellar protein FhlB [Burkholderia ubonensis Bu] Length = 105 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + + AP ++AKG +A+ + A + + + P + SL QV ++ I Sbjct: 9 AAALVYDAKGGDAAPRVIAKGYGAVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHKK 353 PP Y+AVA L+ +Y + Sbjct: 68 PPQLYQAVADLLAWLYALE 86 >gi|312134792|ref|YP_004002130.1| type iii secretion exporter [Caldicellulosiruptor owensensis OL] gi|311774843|gb|ADQ04330.1| type III secretion exporter [Caldicellulosiruptor owensensis OL] Length = 92 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 ++ AP ++AKG+ +A+K+ + A + IP+FE +A LF + + IP Y+ VAQ Sbjct: 17 KDIAPKVIAKGKGYVAEKIIEKAKQEEIPVFEHKDVAEKLF-SLELQEYIPEDLYEVVAQ 75 Query: 345 LIYKI 349 ++ I Sbjct: 76 ILVFI 80 >gi|302872175|ref|YP_003840811.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47] gi|302575034|gb|ADL42825.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47] Length = 92 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344 ++ AP +VAKG+ +A+K+ + A + NIP++++ ++A LF + + IP Y+ VAQ Sbjct: 17 KDIAPKVVAKGKGYVAEKIIEKAKQENIPVYKDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75 Query: 345 LIYKI 349 ++ I Sbjct: 76 ILVFI 80 >gi|210135753|ref|YP_002302192.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori P12] gi|210133721|gb|ACJ08712.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori P12] gi|317011812|gb|ADU85559.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori SouthAfrica7] Length = 90 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ IP Y++V Q+ + Sbjct: 60 LDCTIPEELYESVVQVFLWL 79 >gi|207093353|ref|ZP_03241140.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori HPKX_438_AG0C1] gi|207108746|ref|ZP_03242908.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori HPKX_438_CA4C1] Length = 90 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E+NI +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYNIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|188528367|ref|YP_001911054.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori Shi470] gi|188144607|gb|ACD49024.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori Shi470] gi|308064357|gb|ADO06244.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori Sat464] Length = 90 Score = 76.4 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|315585981|gb|ADU40362.1| FlhB domain protein [Helicobacter pylori 35A] gi|332674386|gb|AEE71203.1| FlhB domain protein [Helicobacter pylori 83] Length = 90 Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTTKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIVLFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|116328316|ref|YP_798036.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331042|ref|YP_800760.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121060|gb|ABJ79103.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124731|gb|ABJ76002.1| FhlB-related protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 90 Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 ++AL++I +++APV+ A L+ +RKIA ++++P+ E+ LA SLF ++P+ S I Sbjct: 2 ISVALKFIPQKDNAPVITASASGLLGDVIRKIANKNSVPVVEDSVLAESLF-ELPVGSEI 60 Query: 335 PPVFYKAVAQLIYKIYHK 352 P Y+AV + I Sbjct: 61 PENLYRAVGAIFSMILEL 78 >gi|24374711|ref|NP_718754.1| FlhB domain-containing protein [Shewanella oneidensis MR-1] gi|24349369|gb|AAN56198.1|AE015758_2 FlhB domain protein [Shewanella oneidensis MR-1] Length = 102 Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y AP +VA G+ L+A ++ +A + I ++P L+ L + + + Sbjct: 7 TQQAVALSYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLELGE 63 Query: 333 AIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 64 EIPRELYLLIAELIAFVY 81 >gi|308183730|ref|YP_003927857.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori PeCan4] gi|308065915|gb|ADO07807.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori PeCan4] Length = 90 Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNIGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|291277367|ref|YP_003517139.1| putative flagellar biosynthesis protein flhB2 [Helicobacter mustelae 12198] gi|290964561|emb|CBG40414.1| putative flagellar biosynthesis protein flhB2 [Helicobacter mustelae 12198] Length = 89 Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y +N AP +VA G+ IA+++ + A E+++P+F +L SL + I+S IP Sbjct: 4 AAALAYAPYQNSAPKVVASGKGTIAEQIIQKAREYDVPLFSNTALVDSLIG-IEIDSQIP 62 Query: 336 PVFYKAVAQLIYKIYH 351 P Y+ V ++ + H Sbjct: 63 PELYQGVVEVFIWLEH 78 >gi|209920313|ref|YP_002294397.1| putative type III secretion protein [Escherichia coli SE11] gi|209913572|dbj|BAG78646.1| putative type III secretion protein [Escherichia coli SE11] Length = 130 Score = 76.0 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I+NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60 Query: 318 PSLARSLFKQVPINSAI 334 LAR + + Sbjct: 61 KKLARKNYATHRRYDYV 77 >gi|256019343|ref|ZP_05433208.1| surface presentation of antigens protein SpaS [Shigella sp. D9] Length = 130 Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317 M S + ++I+NPTH A+ + + + P++ + N +A +RK A E IPI + Sbjct: 1 MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60 Query: 318 PSLARSLFKQVPINSAI 334 LAR + + Sbjct: 61 KKLARKNYATHRRYDYV 77 >gi|217972643|ref|YP_002357394.1| FlhB domain-containing protein [Shewanella baltica OS223] gi|217497778|gb|ACK45971.1| FlhB domain-containing protein [Shewanella baltica OS223] Length = 102 Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +AP +VA G+ LIA+++ +A + + I ++P L+ L + + + IP Sbjct: 10 AVALSYD--GRNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFL-QLLELGEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI +Y Sbjct: 67 KELYVLIAELIAFVY 81 >gi|88800022|ref|ZP_01115593.1| FlhB domain protein [Reinekea sp. MED297] gi|88777300|gb|EAR08504.1| FlhB domain protein [Reinekea sp. MED297] Length = 112 Score = 76.0 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A L+Y + P++ A G+N A++M ++A +P++E+ LA ++ Q+ + Sbjct: 6 TTRAATLKYKGRKT--PIISALGKNEQAEEMIQLAKACGVPVYEDEDLA-AILSQLDVGQ 62 Query: 333 AIPPVFYKAVAQLIYKIY 350 AIP Y+ VA ++ + Sbjct: 63 AIPAELYEWVASVLAFAF 80 >gi|261838862|gb|ACX98628.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori 51] gi|297380750|gb|ADI35637.1| FlhB domain protein [Helicobacter pylori v225d] Length = 90 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|302873574|ref|YP_003842207.1| type III secretion exporter [Clostridium cellulovorans 743B] gi|307688245|ref|ZP_07630691.1| type III secretion exporter [Clostridium cellulovorans 743B] gi|302576431|gb|ADL50443.1| type III secretion exporter [Clostridium cellulovorans 743B] Length = 88 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y Q P++ A+G +A+K+ + A E+++PI +A L V + +IP Sbjct: 7 AAALKYEQGYES-PIVAAQGVGYVAEKIVEKADENDVPIVYNKEMAD-LLTNVDVGDSIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y AVA+++ I Sbjct: 65 EELYAAVAEIMAHI 78 >gi|15646182|ref|NP_208366.1| ABC transporter, putative [Helicobacter pylori 26695] gi|308185362|ref|YP_003929495.1| ABC transporter, putative [Helicobacter pylori SJM180] gi|2314760|gb|AAD08615.1| ABC transporter, putative [Helicobacter pylori 26695] gi|308061282|gb|ADO03178.1| ABC transporter, putative [Helicobacter pylori SJM180] Length = 90 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|317010266|gb|ADU80846.1| hypothetical protein HPIN_08350 [Helicobacter pylori India7] Length = 90 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V ++ AIP Sbjct: 7 AAALAYNMGQDHAPKVIASGVGEVAKRIIQKAREYDIALFSNPMLVDSLLK-VELDCAIP 65 Query: 336 PVFYKAVAQLIYKI 349 Y++V Q+ + Sbjct: 66 EELYESVVQVFLWL 79 >gi|188595909|pdb|2VT1|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of Spa40, The Specificity Switch For The Shigella Flexneri Type Iii Secretion System Length = 93 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 33/80 (41%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331 PTH A+ + + AP + N A +RK A E IP + LAR L+K Sbjct: 1 PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKY 60 Query: 332 SAIPPVFYKAVAQLIYKIYH 351 S + V +LI + Sbjct: 61 SFVDFEHLDEVLRLIVWLEQ 80 >gi|109948156|ref|YP_665384.1| putative flagellar biosynthesis protein [Helicobacter acinonychis str. Sheeba] gi|109715377|emb|CAK00385.1| putative flagellar biosynthesis protein [Helicobacter acinonychis str. Sheeba] Length = 90 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++S IP Y++V Q+ + Sbjct: 60 LDSVIPEELYESVVQVFLWL 79 >gi|15612548|ref|NP_224201.1| putative flagellar biosynthesis protein [Helicobacter pylori J99] gi|108563949|ref|YP_628265.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori HPAG1] gi|208435454|ref|YP_002267120.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori G27] gi|254780106|ref|YP_003058213.1| hypothetical protein HELPY_1578 [Helicobacter pylori B38] gi|2440007|gb|AAC45665.1| AbcB [Helicobacter pylori] gi|4156117|gb|AAD07068.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] gi|107837722|gb|ABF85591.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori HPAG1] gi|208433383|gb|ACI28254.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori G27] gi|254002019|emb|CAX30278.1| Conserved hypothetical protein; putative flagellar biosynthetic protein flhB [Helicobacter pylori B38] gi|261840268|gb|ACY00034.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori 52] gi|317013390|gb|ADU83998.1| hypothetical protein HPLT_08135 [Helicobacter pylori Lithuania75] gi|317181277|dbj|BAJ59063.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori F32] gi|317182800|dbj|BAJ60584.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori F57] Length = 90 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|167949067|ref|ZP_02536141.1| flagellar biosynthesis protein FlhB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 59 Score = 76.0 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59 M+EN KTE P++K++ D+ +G P SRE + + L +I L+ + Sbjct: 1 MAENKDGQEKTEQPTAKRMSDSRRKGQVPRSRELNTMAVTLGGVITLVMMSGHFAQAAA 59 >gi|107023990|ref|YP_622317.1| flagellar protein FhlB [Burkholderia cenocepacia AU 1054] gi|116691077|ref|YP_836700.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424] gi|170734411|ref|YP_001766358.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3] gi|254246929|ref|ZP_04940250.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184] gi|105894179|gb|ABF77344.1| putative flagellar protein FhlB [Burkholderia cenocepacia AU 1054] gi|116649166|gb|ABK09807.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424] gi|124871705|gb|EAY63421.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184] gi|169817653|gb|ACA92236.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3] Length = 105 Score = 75.6 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG ++A+ + A++ + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYAL 85 >gi|311030145|ref|ZP_07708235.1| hypothetical protein Bm3-1_06301 [Bacillus sp. m3-13] Length = 98 Score = 75.6 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y Q + APV+ AKG +IA+ + + A +H IP+ E+ +L ++ +N +IP Sbjct: 11 AVAIKYDQAKTVAPVVKAKGAGIIAENIIQEAKKHQIPLQEDGALLEV-LMELELNESIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ VA+++ +Y+ Sbjct: 70 EELYEVVAEVLAYVYNL 86 >gi|167751329|ref|ZP_02423456.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702] gi|167655575|gb|EDR99704.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702] gi|291530383|emb|CBK95968.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Eubacterium siraeum 70/3] gi|291557246|emb|CBL34363.1| Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Eubacterium siraeum V10Sc8a] Length = 94 Score = 75.6 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y N APV+VA G +AKK+ IA E+ +P++ + S A +L + IP Sbjct: 11 AAALKYNPDLNYAPVVVASGLGELAKKIINIADENGVPVYRDDSTA-ALLVMLNSGETIP 69 Query: 336 PVFYKAVAQLIYKI 349 Y+ +A + ++ Sbjct: 70 VELYRIIAAIYAEV 83 >gi|146293645|ref|YP_001184069.1| FlhB domain-containing protein [Shewanella putrefaciens CN-32] gi|145565335|gb|ABP76270.1| FlhB domain protein [Shewanella putrefaciens CN-32] gi|319427044|gb|ADV55118.1| type III secretion exporter [Shewanella putrefaciens 200] Length = 103 Score = 75.6 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 N T A+AL Y AP +VA G+ LIA+++ +A E + I ++ L+ L + + + Sbjct: 6 NKTKQAVALSYDGK--HAPKIVATGEGLIAEEIIALAKESGVYIHQDAHLSNFL-RLLEL 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 63 GEEIPKELYLLIAELIAFVY 82 >gi|113969652|ref|YP_733445.1| FlhB domain-containing protein [Shewanella sp. MR-4] gi|113884336|gb|ABI38388.1| FlhB domain protein [Shewanella sp. MR-4] Length = 103 Score = 75.6 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 T A+AL Y AP +VA G+ L+A ++ +A + I ++P L+ L + + + Sbjct: 6 PKTQQAVALGYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLEL 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 63 GEEIPKELYLLIAELIAFVY 82 >gi|206558931|ref|YP_002229691.1| putative export system protein [Burkholderia cenocepacia J2315] gi|198034968|emb|CAR50840.1| putative export system protein [Burkholderia cenocepacia J2315] Length = 105 Score = 75.6 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A AL Y + AP +VAKG ++A+ + A++ + + P + SL QV ++ I Sbjct: 9 AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67 Query: 335 PPVFYKAVAQLIYKIYHK 352 PP Y+AVA L+ +Y Sbjct: 68 PPQLYQAVADLLAWLYAL 85 >gi|114046882|ref|YP_737432.1| FlhB domain-containing protein [Shewanella sp. MR-7] gi|113888324|gb|ABI42375.1| FlhB domain protein [Shewanella sp. MR-7] Length = 103 Score = 75.6 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 T A+AL Y AP +VA G+ L+A ++ +A + I ++P L+ L + + + Sbjct: 6 PKTQQAVALSYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLEL 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 63 GEEIPKELYLLIAELIAFVY 82 >gi|261419407|ref|YP_003253089.1| hypothetical protein GYMC61_1991 [Geobacillus sp. Y412MC61] gi|319766222|ref|YP_004131723.1| type III secretion exporter [Geobacillus sp. Y412MC52] gi|261375864|gb|ACX78607.1| conserved hypothetical protein [Geobacillus sp. Y412MC61] gi|317111088|gb|ADU93580.1| type III secretion exporter [Geobacillus sp. Y412MC52] Length = 95 Score = 75.6 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP++ AKG +A+ + A EH +PI ++P+L L +V IN IP Sbjct: 8 AVALSYDAALDAAPIVKAKGVGKVAEAIIAAAREHGVPIRQDPTLVE-LLGKVEINETIP 66 Query: 336 PVFYKAVAQLIYKIYHK 352 Y VA+L +Y Sbjct: 67 EELYALVAELFAFLYQL 83 >gi|300853474|ref|YP_003778458.1| hypothetical protein CLJU_c02710 [Clostridium ljungdahlii DSM 13528] gi|300433589|gb|ADK13356.1| hypothetical protein CLJU_c02710 [Clostridium ljungdahlii DSM 13528] Length = 88 Score = 75.6 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 +AP++ A G IA + A E +PI + LA +L V I +P Y AVA++I Sbjct: 17 EAPIVTAAGIGQIADNILNKAKESGVPIVYDKELA-NLLSNVDIGDNVPFELYDAVAKVI 75 Query: 347 YKI 349 + Sbjct: 76 AYV 78 >gi|332140356|ref|YP_004426094.1| uncharacterized C-terminal FlhB domain-containing protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550378|gb|AEA97096.1| uncharacterized C-terminal FlhB domain-containing protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 105 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 A+ L+Y + + P +V+KG +A+ + +A E I I E+P L+ L + + I Sbjct: 10 AIGLKYEGGDKKNTPKVVSKGYGDLAEAIIAMAEETGILIHEDPYLSEVL-ATLDVGQDI 68 Query: 335 PPVFYKAVAQLIY--KIYHKKI 354 P Y +A+L+ + KI Sbjct: 69 PESLYFVIAELLAYSYVLQGKI 90 >gi|257457069|ref|ZP_05622247.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] gi|257445543|gb|EEV20608.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC 35580] Length = 88 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL Y E P++ A G +IA+K+R+IA + +IP+ + P LA L + I S IP Sbjct: 8 SVALSYTFGE-SVPLIAASGHGVIAQKIREIADKCHIPLIKNPLLAEVLV-EAEIGSCIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+AVA L + KK Sbjct: 66 EETYQAVAALFAFL-QKK 82 >gi|126175101|ref|YP_001051250.1| FlhB domain-containing protein [Shewanella baltica OS155] gi|153001425|ref|YP_001367106.1| FlhB domain-containing protein [Shewanella baltica OS185] gi|160876150|ref|YP_001555466.1| FlhB domain-containing protein [Shewanella baltica OS195] gi|304409932|ref|ZP_07391551.1| type III secretion exporter [Shewanella baltica OS183] gi|307302355|ref|ZP_07582113.1| type III secretion exporter [Shewanella baltica BA175] gi|125998306|gb|ABN62381.1| FlhB domain protein [Shewanella baltica OS155] gi|151366043|gb|ABS09043.1| FlhB domain protein [Shewanella baltica OS185] gi|160861672|gb|ABX50206.1| FlhB domain protein [Shewanella baltica OS195] gi|304351341|gb|EFM15740.1| type III secretion exporter [Shewanella baltica OS183] gi|306914393|gb|EFN44814.1| type III secretion exporter [Shewanella baltica BA175] gi|315268346|gb|ADT95199.1| type III secretion exporter [Shewanella baltica OS678] Length = 102 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y +AP +VA G+ LIA+++ +A + + I ++P L+ L + + + IP Sbjct: 10 AVALSYD--GRNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFL-QLLELGEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI +Y Sbjct: 67 KELYLLIAELIAFVY 81 >gi|167034893|ref|YP_001670124.1| hypothetical protein PputGB1_3898 [Pseudomonas putida GB-1] gi|166861381|gb|ABY99788.1| conserved hypothetical protein [Pseudomonas putida GB-1] Length = 112 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T A+AL Y AP L AKG + +A+ + +A EH +PI+E L R L ++ + Sbjct: 6 TRQAIALNYD--GQQAPTLSAKGDDALAEAILALAREHEVPIYENAELVR-LLARLELGE 62 Query: 333 AIPPVFYKAVAQLIYKIYHKK 353 IP Y +A++I + + Sbjct: 63 QIPEALYLTIAEIIAFAWQLR 83 >gi|119468354|ref|ZP_01611445.1| hypothetical protein ATW7_09923 [Alteromonadales bacterium TW-7] gi|119447862|gb|EAW29127.1| hypothetical protein ATW7_09923 [Alteromonadales bacterium TW-7] Length = 102 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y P + KG +A+++ A + I I E+P LA++L + + IP Sbjct: 10 AIGLLYEAGST--PSVSVKGFGELAEEIISAAKQKGIMIHEDPDLAKTL-SHLELGEEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A+LI Y + Sbjct: 67 KELYFVIAELIAFSYVLR 84 >gi|117919817|ref|YP_869009.1| FlhB domain-containing protein [Shewanella sp. ANA-3] gi|117612149|gb|ABK47603.1| FlhB domain protein [Shewanella sp. ANA-3] Length = 103 Score = 75.2 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330 T A+AL Y +AP +VA G+ L+A ++ +A + I ++P L+ L + + + Sbjct: 6 PKTQQAVALSYDGK--NAPKVVASGEGLVADEIIALAKASGVFIHQDPHLSNFL-RLLEL 62 Query: 331 NSAIPPVFYKAVAQLIYKIY 350 IP Y +A+LI +Y Sbjct: 63 GEEIPKELYLLIAELIAFVY 82 >gi|266621940|ref|ZP_06114875.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] gi|288866374|gb|EFC98672.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM 13479] Length = 127 Score = 75.2 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ +PV++A G +A+ + IA + IP+F++ S A SL + + S IP Sbjct: 9 AVALKYNVEEDASPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLEVGSNIP 67 Query: 336 PVFYKAVAQL 345 Y+ VA + Sbjct: 68 VELYEVVAAI 77 >gi|187918556|ref|YP_001884119.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH] gi|119861404|gb|AAX17199.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH] Length = 86 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 AL ++Y T+ AP ++AK + A +++++A + IPI E+ L+ SLF + I Sbjct: 6 LALLIKYD-TKFPAPFILAKARGEKALRIKELAKQEGIPIVEDKYLSESLF-LINEGDFI 63 Query: 335 PPVFYKAVAQLIYKIYHKK 353 ++K VAQ++ +Y K Sbjct: 64 DFKYFKVVAQILSVVYKLK 82 >gi|239628974|ref|ZP_04672005.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519120|gb|EEQ58986.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 127 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y E+ +PV++A G +A+ + IA + IP+F++ S A SL + + IP Sbjct: 9 AVALKYNADEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGCNIP 67 Query: 336 PVFYKAVAQL 345 Y+ VA + Sbjct: 68 VELYEVVAGI 77 >gi|6822153|emb|CAB71025.1| putative ABC transporter [Helicobacter pylori] Length = 80 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEMAKRIIQEAEEYDIALFSNPMLVDSLLK-VE 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|289578627|ref|YP_003477254.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus Ab9] gi|289528340|gb|ADD02692.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus Ab9] Length = 93 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ AP +VAKGQ IA K+ + A + +PI+++ + L+ + I IP Sbjct: 9 AVALKYDV-QDIAPKVVAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66 Query: 336 PVFYKAVAQLIYKI 349 YK VA+++ I Sbjct: 67 EDLYKIVAEILIFI 80 >gi|251772415|gb|EES52982.1| probable flagellar biosynthesis protein [Leptospirillum ferrodiazotrophum] Length = 90 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 ++ALRY+ ++AP+++ GQ IA+ + +A IP+ + P L++ L + VP + Sbjct: 3 LSVALRYLPGVDEAPLVLVSGQGEIARGIVLLAQSLKIPVVKAPDLSQQLLR-VPPGHPV 61 Query: 335 PPVFYKAVAQLIYKIY 350 P Y+AVA ++ ++ Sbjct: 62 PEELYEAVAVILAALF 77 >gi|168334054|ref|ZP_02692270.1| hypothetical protein Epulo_03924 [Epulopiscium sp. 'N.t. morphotype B'] Length = 84 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +AP + AKG+ +A+ + A ++ IP++E+ +LA +L +V I S IP Sbjct: 4 AVALSY---KAEAPEVTAKGKGKVAENIIATAEKNEIPVYEDKNLA-NLLTEVEIGSQIP 59 Query: 336 PVFYKAVAQLIYKI 349 Y+ VA+++ + Sbjct: 60 EEVYELVAKILIMV 73 >gi|157162317|ref|YP_001459635.1| hypothetical protein EcHS_A3014 [Escherichia coli HS] gi|300906604|ref|ZP_07124295.1| hypothetical protein HMPREF9536_04565 [Escherichia coli MS 84-1] gi|300950610|ref|ZP_07164512.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300958191|ref|ZP_07170345.1| hypothetical protein HMPREF9547_03909 [Escherichia coli MS 175-1] gi|301303004|ref|ZP_07209131.1| hypothetical protein HMPREF9347_01589 [Escherichia coli MS 124-1] gi|301643803|ref|ZP_07243840.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|307139547|ref|ZP_07498903.1| surface presentation of antigens protein SpaS [Escherichia coli H736] gi|331643547|ref|ZP_08344678.1| surface presentation of antigens protein SpaS [Escherichia coli H736] gi|71388155|gb|AAZ31289.1| EpaS2 [Escherichia coli] gi|157067997|gb|ABV07252.1| conserved hypothetical protein [Escherichia coli HS] gi|300315143|gb|EFJ64927.1| hypothetical protein HMPREF9547_03909 [Escherichia coli MS 175-1] gi|300401643|gb|EFJ85181.1| hypothetical protein HMPREF9536_04565 [Escherichia coli MS 84-1] gi|300450090|gb|EFK13710.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300841668|gb|EFK69428.1| hypothetical protein HMPREF9347_01589 [Escherichia coli MS 124-1] gi|301077836|gb|EFK92642.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|315256729|gb|EFU36697.1| type III secretion system protein BsaZ [Escherichia coli MS 85-1] gi|323935781|gb|EGB32084.1| type III secretion protein SctU [Escherichia coli E1520] gi|331037018|gb|EGI09242.1| surface presentation of antigens protein SpaS [Escherichia coli H736] Length = 120 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++ Sbjct: 1 MIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT 60 Query: 328 VPINSAI 334 + Sbjct: 61 HRRYDYV 67 >gi|323155905|gb|EFZ42072.1| escU domain protein [Escherichia coli EPECa14] Length = 55 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253 +L +V D + H+ K+KMSK E+K E K + GNP IK ++ + Sbjct: 1 MLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRLHSEI 55 >gi|45657435|ref|YP_001521.1| flagellar biosynthetic transmembrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600674|gb|AAS70158.1| flagellar biosynthetic transmembrane protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 87 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 ++AL++I +++APV+ A + +R IA ++++P + P LA SL ++PI S I Sbjct: 2 ISVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVPTVKNPILAESL-SELPIGSEI 60 Query: 335 PPVFYKAVAQLIYKI 349 P Y+AV + I Sbjct: 61 PENLYRAVGAIFSMI 75 >gi|297544850|ref|YP_003677152.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842625|gb|ADH61141.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 93 Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y ++ AP ++AKGQ IA K+ + A + +PI+++ + L+ + I IP Sbjct: 9 AVALKYDV-QDIAPKVIAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66 Query: 336 PVFYKAVAQLIYKI 349 Y VA+++ I Sbjct: 67 EDLYNIVAEILIFI 80 >gi|307638262|gb|ADN80712.1| putative ABC transporter [Helicobacter pylori 908] gi|317015012|gb|ADU82448.1| hypothetical protein HPGAM_08420 [Helicobacter pylori Gambia94/24] gi|325996854|gb|ADZ52259.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori 2018] gi|325998446|gb|ADZ50654.1| putative flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 90 Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329 N T A AL Y ++ AP ++A G +AK++ + A E++I +F P L SL K V Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VG 59 Query: 330 INSAIPPVFYKAVAQLIYKI 349 ++ AIP Y++V Q+ + Sbjct: 60 LDCAIPEELYESVVQVFLWL 79 >gi|90579953|ref|ZP_01235761.1| Uncharacterized conserved protein [Vibrio angustum S14] gi|90438838|gb|EAS64021.1| Uncharacterized conserved protein [Vibrio angustum S14] Length = 102 Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T +A+AL+Y ++ P + AKG +A+ + + +H I ++P LA+ L + Sbjct: 8 TSHAIALKYDGEKS--PYITAKGHQQLAEHIIEQVKQHGGLIHQDPVLAQYL-NSFDVGD 64 Query: 333 AIPPVFYKAVAQLIYK 348 IP Y +A+LI Sbjct: 65 EIPQELYLIIAELIAF 80 >gi|288555870|ref|YP_003427805.1| FlhB protein [Bacillus pseudofirmus OF4] gi|288547030|gb|ADC50913.1| FlhB protein [Bacillus pseudofirmus OF4] Length = 99 Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 I PT A +RY + + AP +VA+G+ +A ++ ++A++++I + E+ +L +L Sbjct: 14 IQNGPT--AAVIRYDKEDGSAPKVVAQGRGQLANQIIQLAHKNDIHMQEDATLVSNLL-D 70 Query: 328 VPINSAIPPVFYKAVAQLI 346 + + IPP Y +A+++ Sbjct: 71 MDLGDNIPPQLYSVMAEIL 89 >gi|148378183|ref|YP_001252724.1| hypothetical protein CBO0180 [Clostridium botulinum A str. ATCC 3502] gi|148287667|emb|CAL81732.1| putative protein exporter [Clostridium botulinum A str. ATCC 3502] Length = 89 Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 ++I N A AL+Y ++ PV+ A G +A K+ + A E +PI + LA +L Sbjct: 1 MVILNERKKAAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58 Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349 + I +IP Y AVA++I + Sbjct: 59 NIDIGDSIPYELYDAVAKVIAYV 81 >gi|153933699|ref|YP_001382583.1| hypothetical protein CLB_0219 [Clostridium botulinum A str. ATCC 19397] gi|153935408|ref|YP_001386136.1| hypothetical protein CLC_0233 [Clostridium botulinum A str. Hall] gi|153938549|ref|YP_001389542.1| hypothetical protein CLI_0242 [Clostridium botulinum F str. Langeland] gi|168177512|ref|ZP_02612176.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|170757316|ref|YP_001779806.1| hypothetical protein CLD_0601 [Clostridium botulinum B1 str. Okra] gi|170761762|ref|YP_001785507.1| hypothetical protein CLK_3357 [Clostridium botulinum A3 str. Loch Maree] gi|226947401|ref|YP_002802492.1| hypothetical protein CLM_0228 [Clostridium botulinum A2 str. Kyoto] gi|152929743|gb|ABS35243.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152931322|gb|ABS36821.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] gi|152934445|gb|ABS39943.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|169122528|gb|ACA46364.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] gi|169408751|gb|ACA57162.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] gi|182670835|gb|EDT82809.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|226844528|gb|ACO87194.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] gi|295317640|gb|ADF98017.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] gi|322804447|emb|CBZ01997.1| flagellar biosynthesis related protein [Clostridium botulinum H04402 065] Length = 86 Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y ++ PV+ A G +A K+ + A E +PI + LA +L + I +IP Sbjct: 7 AAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDIGDSIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I + Sbjct: 65 YELYDAVAKVIAYV 78 >gi|329898296|ref|ZP_08272379.1| hypothetical protein IMCC3088_498 [gamma proteobacterium IMCC3088] gi|328920861|gb|EGG28304.1| hypothetical protein IMCC3088_498 [gamma proteobacterium IMCC3088] Length = 92 Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 A AP ++AK + + + A + IP+ E P LA +L + V I+ IP Sbjct: 13 AYAVEYGSKAAPTVMAKASGYDVEILIEAARDLQIPVIENPQLA-ALLEGVEIDEEIPEE 71 Query: 338 FYKAVAQLIYKIY 350 Y +VA ++ ++ Sbjct: 72 LYHSVAIVLSWVF 84 >gi|167623406|ref|YP_001673700.1| FlhB domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167353428|gb|ABZ76041.1| FlhB domain protein [Shewanella halifaxensis HAW-EB4] Length = 102 Score = 73.7 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP + AKG++ +A+++ +A + I I ++ L L +++ I IP Sbjct: 10 AVALSYQSG--AAPKVSAKGEDKLAEEIIALAQQAGIHIHQDEYLCDFL-QRLEIGDEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI +Y Sbjct: 67 SELYLLIAELIAFVY 81 >gi|119953478|ref|YP_945687.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135] gi|119862249|gb|AAX18017.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135] Length = 86 Score = 73.7 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 AL ++Y T+ AP ++AK + +++++A IPI E+ L+ SLF V I Sbjct: 6 LALLIKYD-TKFPAPFILAKARGEKVLRIKELAKREGIPIVEDKYLSESLF-LVNEGDFI 63 Query: 335 PPVFYKAVAQLIYKIYHKK 353 ++K VA ++ +Y K Sbjct: 64 DSKYFKVVAHILSVVYKLK 82 >gi|187777232|ref|ZP_02993705.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC 15579] gi|187774160|gb|EDU37962.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC 15579] Length = 89 Score = 73.3 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326 +II N A AL+Y ++ PV+ A G +A K+ + A E +PI + LA +L Sbjct: 1 MIILNERKKAAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58 Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349 + I +IP Y AVA++I + Sbjct: 59 NIDIGDSIPYELYDAVAKVIAYV 81 >gi|301303005|ref|ZP_07209132.1| hypothetical protein HMPREF9347_01590 [Escherichia coli MS 124-1] gi|300841669|gb|EFK69429.1| hypothetical protein HMPREF9347_01590 [Escherichia coli MS 124-1] Length = 67 Score = 73.3 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 + +++ L + + + D Y + +KM KQE+K E K+ GNP IK++++ Sbjct: 1 MLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKKQEGNPEIKSKRRERI 60 Query: 251 R 251 R Sbjct: 61 R 61 >gi|310659608|ref|YP_003937329.1| hypothetical protein CLOST_2307 [Clostridium sticklandii DSM 519] gi|308826386|emb|CBH22424.1| conserved protein of unknown function [Clostridium sticklandii] Length = 95 Score = 72.9 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+++ Y E AP++ AKGQ +A+K+ + A E + + + L SL V I IP Sbjct: 11 AVSVTYE-DELRAPIVSAKGQGYVAEKIIEKAQESGVATYFDEELLESLMA-VAIGDEIP 68 Query: 336 PVFYKAVAQLIYKI 349 Y+ VA+++ I Sbjct: 69 VELYEIVAKVLAFI 82 >gi|297584528|ref|YP_003700308.1| putative cytoplasmic domain of flagellar protein FhlB-like protein [Bacillus selenitireducens MLS10] gi|297142985|gb|ADH99742.1| putative cytoplasmic domain of flagellar protein FhlB-like protein [Bacillus selenitireducens MLS10] Length = 99 Score = 72.9 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328 + PT A +RY +T D P +VA G+ IA+++ ++A E++I + E+ L +L + Sbjct: 15 VNGPT--AAVIRYDETNGDDPKIVASGKGYIAERILELAKENHIHMEEDSLLLENLI-DM 71 Query: 329 PINSAIPPVFYKAVAQLIYKI 349 + IPP Y +A+++ I Sbjct: 72 DLGENIPPQLYAVIAEILLMI 92 >gi|309793917|ref|ZP_07688342.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308122324|gb|EFO59586.1| conserved hypothetical protein [Escherichia coli MS 145-7] Length = 120 Score = 72.9 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++ Sbjct: 1 MIANPTHIAIGIYFKPHLSTIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT 60 Query: 328 VPINSAI 334 + Sbjct: 61 HRRYDYV 67 >gi|91792711|ref|YP_562362.1| FlhB domain-containing protein [Shewanella denitrificans OS217] gi|91714713|gb|ABE54639.1| FlhB domain protein [Shewanella denitrificans OS217] Length = 99 Score = 72.9 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL + AP + A G +L+A+++ +A + + I ++P+L+ L + + + +P Sbjct: 7 AVALSFDGK--SAPKVTASGTDLLAEEIIALAEKAGVHIHQDPNLSNFL-QMLELGEEVP 63 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI IY Sbjct: 64 KELYLLIAELIAFIY 78 >gi|307310524|ref|ZP_07590172.1| type III secretion exporter [Escherichia coli W] gi|306909419|gb|EFN39914.1| type III secretion exporter [Escherichia coli W] gi|323377252|gb|ADX49520.1| type III secretion exporter [Escherichia coli KO11] Length = 120 Score = 72.5 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I NPTH A+ + + + P++ + N +A +RK A E IPI + LAR ++ Sbjct: 1 MIFNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKIYAT 60 Query: 328 VPINSAI 334 + Sbjct: 61 HRRYDYV 67 >gi|15639896|ref|NP_219346.1| hypothetical protein TP0911 [Treponema pallidum subsp. pallidum str. Nichols] gi|189026134|ref|YP_001933906.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum SS14] gi|3323223|gb|AAC65862.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018709|gb|ACD71327.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum SS14] gi|291060268|gb|ADD73003.1| FlhB domain protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 83 Score = 72.5 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 ++AL Y T + AP++VA G IA+K+ +IA + +I + ++ LAR L + I + IP Sbjct: 8 SVALSY-ATGDKAPIIVASGTGAIAEKIVEIAKKFDIALVQDELLARVLSEH-RIGACIP 65 Query: 336 PVFYKAVAQLIYKIYHKK 353 P Y+ V+ + +Y ++ Sbjct: 66 PETYQVVSAIFAFLYTQQ 83 >gi|168182211|ref|ZP_02616875.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237793498|ref|YP_002861050.1| hypothetical protein CLJ_B0225 [Clostridium botulinum Ba4 str. 657] gi|182674642|gb|EDT86603.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229261705|gb|ACQ52738.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 86 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y ++ PV+ G +A K+ + A E +PI + LA +L + I +IP Sbjct: 7 AAALKYEESYTS-PVVTVAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDIGDSIP 64 Query: 336 PVFYKAVAQLIYKI 349 Y AVA++I + Sbjct: 65 YELYDAVAKVIAYV 78 >gi|15614038|ref|NP_242341.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans C-125] gi|10174092|dbj|BAB05194.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans C-125] Length = 99 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A ++Y +T DAP LVA G+ IA+++ +A +NI + E+P L +L + + IP Sbjct: 20 AAVIQYDETSGDAPKLVAHGKGQIAEQIIDMAKRNNIHMQEDPLLVENLL-DMDLGDNIP 78 Query: 336 PVFYKAVAQLI 346 P Y +A+++ Sbjct: 79 PQLYSVMAEIL 89 >gi|89073439|ref|ZP_01159962.1| Uncharacterized conserved protein, C-terminal FlhB domain protein-like [Photobacterium sp. SKA34] gi|89050703|gb|EAR56184.1| Uncharacterized conserved protein, C-terminal FlhB domain protein-like [Photobacterium sp. SKA34] Length = 102 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332 T +A+AL+Y ++ P + AKG +A+ + + +H I ++P LA+ L + Sbjct: 8 TTHAIALKYDGEKS--PYITAKGHQQLAEHIIEQVKQHGGLIHQDPVLAKYL-NSFDVGD 64 Query: 333 AIPPVFYKAVAQLIYK 348 IP Y +A+LI Sbjct: 65 DIPQELYLIIAELIAF 80 >gi|218671828|ref|ZP_03521497.1| type III secretion system translocation protein [Rhizobium etli GR56] Length = 107 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 5/103 (4%) Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 G I+ ++ L + +L++ + DI S + Sbjct: 5 GAILYF-----LNSIFWSPLCGEACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALF 59 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261 + +M+K E + E K + G+P +K+ ++ I Sbjct: 60 RHEHRMTKTEARREYKDTQGDPKLKSARRQIGAEMRSSPPRRQ 102 >gi|322379284|ref|ZP_08053670.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1] gi|322379844|ref|ZP_08054132.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5] gi|321147722|gb|EFX42334.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5] gi|321148321|gb|EFX42835.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1] Length = 86 Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ AP +VA G IA+ + + A +IP+F SL SL +P++ AIP Sbjct: 4 AVALAYNIEQDHAPKVVASGVGSIAEAIMQKAKAFDIPLFCNESLVESLLH-LPVDHAIP 62 Query: 336 PVFYKAVAQLIYKI 349 P Y++V ++ + Sbjct: 63 PELYQSVVEVFIWL 76 >gi|323941620|gb|EGB37800.1| type III secretion protein SctU [Escherichia coli E482] Length = 120 Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 8/121 (6%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 +L +YL + F ++ + S L +L + + D + + + +IP L Sbjct: 1 MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGVGWLKTIIPFL 52 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 L+ M I Q L VK F ++ G+KRI+ + + F+K+ + II Sbjct: 53 LVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFV 112 Query: 160 T 160 Sbjct: 113 I 113 >gi|226326421|ref|ZP_03801939.1| hypothetical protein PROPEN_00269 [Proteus penneri ATCC 35198] gi|225205204|gb|EEG87558.1| hypothetical protein PROPEN_00269 [Proteus penneri ATCC 35198] Length = 176 Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 53/138 (38%) Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 + +S +++P L++ + G L + L +K R++ G K+I+S+ Sbjct: 33 IEVISKVFFDIILPILVVTALVGTIPSLFESRFKLATEAIKLDLTRINPISGFKKIFSLR 92 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 + +F+K+ + I++ + + + + + ++ V + + + Sbjct: 93 TVKDFIKTLLFIVVFIITCYLFIIVYGREIFFLYRSGLNQVIDKWGSLVVSFIFVFFYIV 152 Query: 204 ATLTVLDIGWSYHQWYSK 221 T + + + + Sbjct: 153 FTYSYFKYYNGFLSFLKR 170 >gi|294140230|ref|YP_003556208.1| FlhB domain-containing protein [Shewanella violacea DSS12] gi|293326699|dbj|BAJ01430.1| FlhB domain protein [Shewanella violacea DSS12] Length = 114 Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y AP++ A G+ +A ++ +A E + I ++ L+ L +++ I IP Sbjct: 22 AVALSYD--GQQAPMITATGKGAVADEIIALAKEAGVLIHKDAHLSDFL-QRLEIGDEIP 78 Query: 336 PVFYKAVAQLIYKIYHK 352 Y +A+LI Y Sbjct: 79 KELYLLIAELIAFAYTL 95 >gi|42527803|ref|NP_972901.1| FlhB domain-containing protein [Treponema denticola ATCC 35405] gi|41818631|gb|AAS12820.1| FlhB domain protein [Treponema denticola ATCC 35405] gi|325474963|gb|EGC78149.1| FlhB domain-containing protein [Treponema denticola F0402] Length = 87 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y E AP++ A G+ L AK++++ A + I I E+ +LA L I S IP Sbjct: 12 AVALSY-ALEAKAPIITASGRGLTAKRIKEAAERNKIKIVEDETLANILIHH-EIGSCIP 69 Query: 336 PVFYKAVAQLIYKIYHK 352 YKAVA + + K Sbjct: 70 EYTYKAVAAIFAFLLKK 86 >gi|300820657|ref|ZP_07100808.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7] gi|309793918|ref|ZP_07688343.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7] gi|300526921|gb|EFK47990.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7] gi|308122325|gb|EFO59587.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7] Length = 55 Score = 70.6 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 + + + D Y + +KM KQE+K E K+ GNP IK++++ R Sbjct: 1 MIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 49 >gi|229918614|ref|YP_002887260.1| FlhB domain protein [Exiguobacterium sp. AT1b] gi|229470043|gb|ACQ71815.1| FlhB domain protein [Exiguobacterium sp. AT1b] Length = 86 Score = 70.6 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y Q+ DAP +VAKG ++A++M +IA + +P+ E+P+L + I IP Sbjct: 7 AMALSYEQS-MDAPHVVAKGTGIVAERMLEIALANGVPVHEDPALLSL-LSALNIEEQIP 64 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y+ +A+L +Y + Sbjct: 65 EDVYQVIAELFVFLYQME 82 >gi|332533097|ref|ZP_08408966.1| hypothetical protein PH505_am00120 [Pseudoalteromonas haloplanktis ANT/505] gi|332037379|gb|EGI73833.1| hypothetical protein PH505_am00120 [Pseudoalteromonas haloplanktis ANT/505] Length = 102 Score = 70.2 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y P + KG +A ++ A I I E+ +LA++L + + IP Sbjct: 10 AIGLLYEAGNT--PTVSVKGFGELADEIIAAAKLKGIMIHEDAALAKTL-SHLELGEEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A+LI Y + Sbjct: 67 KELYYVIAELIAFSYVLR 84 >gi|14422431|dbj|BAB60838.1| epaS2 [Escherichia coli] Length = 120 Score = 70.2 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I+NPTH A+ + + + P++ + N +A +RK A E IPI + LAR + Sbjct: 1 MISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKNYAT 60 Query: 328 VPINSAI 334 + Sbjct: 61 HRRYDYV 67 >gi|328947869|ref|YP_004365206.1| type III secretion exporter [Treponema succinifaciens DSM 2489] gi|328448193|gb|AEB13909.1| type III secretion exporter [Treponema succinifaciens DSM 2489] Length = 87 Score = 70.2 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 +A++L+Y DAP + AK ++AKKM +IA E+NIP+ E +A ++ I I Sbjct: 8 FAVSLKY-PENADAPFISAKESGILAKKMVEIAQENNIPVVEN-DIAANILSMRQIGECI 65 Query: 335 PPVFYKAVAQLIYKIYHKK 353 P ++A+A++ I + + Sbjct: 66 PESTWEAIAEIFTFIKNME 84 >gi|56460216|ref|YP_155497.1| FlhB domain-containing protein [Idiomarina loihiensis L2TR] gi|56179226|gb|AAV81948.1| Uncharacterized conserved protein, related to C-terminal FlhB domain [Idiomarina loihiensis L2TR] Length = 93 Score = 70.2 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y +AP ++A+G + +A+++ +A EH + + E+P L+ SL ++ + IP Sbjct: 9 AIGLSYD--GFNAPKVIARGFDELAEEIIAVAKEHGVLVHEDPLLSDSL-AKLNVGDEIP 65 Query: 336 PVFY 339 Y Sbjct: 66 RELY 69 >gi|291529025|emb|CBK94611.1| Flagellar biosynthesis pathway, component FlhB [Eubacterium rectale M104/1] Length = 93 Score = 70.2 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 2 SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61 +++ KTE + KK++DA EG S+E + ++ + L F S ++ Sbjct: 25 AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84 Query: 62 LHV 64 Sbjct: 85 FST 87 >gi|293449181|ref|ZP_06663602.1| type III secretion protein SctU [Escherichia coli B088] gi|300815713|ref|ZP_07095937.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300820656|ref|ZP_07100807.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|331669594|ref|ZP_08370440.1| surface presentation of antigens protein SpaS [Escherichia coli TA271] gi|331678843|ref|ZP_08379517.1| surface presentation of antigens protein SpaS [Escherichia coli H591] gi|291322271|gb|EFE61700.1| type III secretion protein SctU [Escherichia coli B088] gi|300526920|gb|EFK47989.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300531642|gb|EFK52704.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|323946509|gb|EGB42533.1| type III secretion protein SctU [Escherichia coli H120] gi|324119898|gb|EGC13777.1| type III secretion protein SctU [Escherichia coli E1167] gi|331063262|gb|EGI35175.1| surface presentation of antigens protein SpaS [Escherichia coli TA271] gi|331073673|gb|EGI44994.1| surface presentation of antigens protein SpaS [Escherichia coli H591] Length = 120 Score = 70.2 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 +I+NPTH A+ + + + P++ + N +A +RK A E IPI + LAR + Sbjct: 1 MISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKNYAT 60 Query: 328 VPINSAI 334 + Sbjct: 61 HRRYDYV 67 >gi|296283248|ref|ZP_06861246.1| flagellar biosynthetic protein FlhB [Citromicrobium bathyomarinum JL354] Length = 66 Score = 69.8 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352 IA +++IPI E+P LAR+L ++ IP Y AVA++I + Sbjct: 15 IAKDNDIPIIEKPPLARALHASAKLDQPIPAEHYLAVAEIISYVMKL 61 >gi|160901650|ref|YP_001567231.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95] gi|160359294|gb|ABX30908.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95] Length = 87 Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ALRY Q + AP +VAKG + IA+++ +IA E NIPI + + + ++ IP Sbjct: 7 AVALRYKQGTDQAPKVVAKGIDSIARRIIEIAEEENIPIVKSEKAVEEFYG-LDLDEEIP 65 Query: 336 PVFYKAVAQLIYKIYHK 352 P Y+ A++I ++ Sbjct: 66 PELYELAAEIIAFVFKL 82 >gi|24215084|ref|NP_712565.1| FlhB-like protein [Leptospira interrogans serovar Lai str. 56601] gi|24196142|gb|AAN49583.1| FlhB-related protein [Leptospira interrogans serovar Lai str. 56601] Length = 87 Score = 69.5 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 ++AL++I +++APV+ A + +R IA ++++ + P LA SL ++PI S I Sbjct: 2 ISVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVLTVKNPILAESL-SELPIGSEI 60 Query: 335 PPVFYKAVAQLIYKI 349 P Y+AV + I Sbjct: 61 PENLYRAVGAIFSMI 75 >gi|77359769|ref|YP_339344.1| hypothetical protein PSHAa0820 [Pseudoalteromonas haloplanktis TAC125] gi|76874680|emb|CAI85901.1| conserved protein of unknown function; similar to FlhB domain protein [Pseudoalteromonas haloplanktis TAC125] Length = 102 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y + P++ KG +A ++ A + I I ++ +LA++L + + IP Sbjct: 10 AIGLLYAAGNS--PMVSTKGFGKLADEIIAAAEKKGIMIHQDEALAKTL-SHLELGEEIP 66 Query: 336 PVFYKAVAQLIYKIYHKK 353 Y +A+LI Y + Sbjct: 67 KELYYVIAELIAFSYVLR 84 >gi|330445392|ref|ZP_08309044.1| hypothetical protein PMSV_307 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489583|dbj|GAA03541.1| hypothetical protein PMSV_307 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 99 Score = 69.1 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y + P + AKG +A+ + + + I ++P LA+ L + IP Sbjct: 8 AIALKYDGEKT--PYITAKGHQQLAEHIIEQVKQQGGLIHQDPVLAQYL-NSFDVGDEIP 64 Query: 336 PVFYKAVAQLIYK 348 Y +A+LI Sbjct: 65 QELYLIIAELIAF 77 >gi|94500688|ref|ZP_01307218.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Oceanobacter sp. RED65] gi|94427243|gb|EAT12223.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Oceanobacter sp. RED65] Length = 93 Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y P++ A+ + A E IPI+E P+L L IP Sbjct: 6 AVALFYDGDTT--PIVSQNQLGEAAQFLIDAALEAGIPIYENPALIEQLAHLSE-GDEIP 62 Query: 336 PVFYKAVAQLIYKIY 350 Y+ +A+++ + Sbjct: 63 VELYRLIAEILAFAF 77 >gi|315127291|ref|YP_004069294.1| hypothetical protein PSM_A2228 [Pseudoalteromonas sp. SM9913] gi|315015805|gb|ADT69143.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 102 Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y + P++ AKG +A ++ +A E I I ++ +LA +L ++ + IP Sbjct: 10 AIGLLYEAGHS--PIVSAKGFGELADEIIALAKEKGILIHQDEALANTL-SKLDLAEEIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI Y Sbjct: 67 KELYFVIAELIAFSY 81 >gi|300906603|ref|ZP_07124294.1| hypothetical protein HMPREF9536_04564 [Escherichia coli MS 84-1] gi|300401642|gb|EFJ85180.1| hypothetical protein HMPREF9536_04564 [Escherichia coli MS 84-1] gi|315256730|gb|EFU36698.1| surface presentation of antigens protein SpaS [Escherichia coli MS 85-1] gi|323183411|gb|EFZ68808.1| surface presentation of antigens protein spaS domain protein [Escherichia coli 1357] Length = 55 Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 + + + D Y + +KM KQE+K E K+ GNP IK++++ R Sbjct: 1 MIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKKQEGNPEIKSKRRERIR 49 >gi|255523689|ref|ZP_05390655.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|296186693|ref|ZP_06855095.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|255512558|gb|EET88832.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] gi|296048730|gb|EFG88162.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans P7] Length = 320 Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A D+KTE + KK DA +G S+E +L ++LA I ++ + S L V Sbjct: 261 ASDDKTEEATPKKKSDARKKGQIAKSKEIALALTLLASTIVIVALGGYVGNGLKSTLIVF 320 >gi|15893927|ref|NP_347276.1| flagellar biosynthesis related protein [Clostridium acetobutylicum ATCC 824] gi|15023512|gb|AAK78616.1|AE007579_6 Flagellar biosynthesis related protein [Clostridium acetobutylicum ATCC 824] gi|325508054|gb|ADZ19690.1| Flagellar biosynthesis related protein [Clostridium acetobutylicum EA 2018] Length = 90 Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL+Y +AP++ A G IA + K A E+ +P+ L L V + S+IP Sbjct: 8 AAALKYDLG-YEAPIVTAVGVGKIADNIVKKASENEVPVVYNKELTD-LLLNVDVGSSIP 65 Query: 336 PVFYKAVAQLIYKI 349 Y VA++I I Sbjct: 66 YEIYDVVAEVIAYI 79 >gi|158524068|gb|ABW71141.1| putative type III secretion apparatus protein [Vibrio parahaemolyticus] Length = 160 Score = 67.9 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 88 SLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + GL L ++ + +++ V++ + +++ G K I+ + + Sbjct: 12 GIDVLWWCVGGLALLKLVMAVFEWVMINKAVISTESLGLKMDKINPINGTKNIFGVEAIS 71 Query: 147 NFMKSFVKIILVGTIITI--SLTENYFTMLDFISA--NPHSILYHAFFTVRKVLIMILLF 202 +SF K++ + ++ + + + + L ++ N +Y+ +++ + L++ Sbjct: 72 ---RSFRKVLELLFLLFLLKYVADVLGSQLYLLNEINNYPYFIYYLIYSIGAASVFYLVY 128 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + +D + + K +M+ E+K+E+K Sbjct: 129 GLCVGTVDFMAEKYHFLHKNRMTFTEMKNELK 160 >gi|114563973|ref|YP_751487.1| FlhB domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335266|gb|ABI72648.1| FlhB domain protein [Shewanella frigidimarina NCIMB 400] Length = 104 Score = 67.9 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL + AP + A G++L+A++M IA E I I ++P L+ L + + + +P Sbjct: 12 AVALSFDGK--SAPKITATGKDLVAEEMILIAKEAGIHIHQDPHLSEFL-QLLELGDEVP 68 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI +Y Sbjct: 69 KELYLLIAELIAFVY 83 >gi|13811425|gb|AAK40113.1|AF354753_1 FlhB [Yersinia enterocolitica] Length = 52 Score = 67.9 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL 48 M+E D+ +K+E P++ K+E A +G P SRE + + A L L Sbjct: 1 MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILW 47 >gi|237749753|ref|ZP_04580233.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374618|gb|EEO25009.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 91 Score = 67.5 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y + ++ AP +VA GQ IA+ + A E+ +P+F L SL K + +NS +P Sbjct: 5 AAALAYEEYKDHAPRIVASGQGKIAEAIIAKAQEYQVPLFCNAELVDSLIK-MEVNSNVP 63 Query: 336 PVFYKAVAQLIYKI 349 Y+AV + + Sbjct: 64 EALYQAVVDVFIWL 77 >gi|212634395|ref|YP_002310920.1| FlhB domain-containing protein [Shewanella piezotolerans WP3] gi|212555879|gb|ACJ28333.1| FlhB domain protein [Shewanella piezotolerans WP3] Length = 102 Score = 66.8 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+A++Y Q AP + AK ++ +A++M +A E I I ++ L L +++ + AIP Sbjct: 10 AVAVKYDQG--AAPSISAKAEDELAQEMIALAEEAGIFIHKDEHLCEFL-QKMDVGEAIP 66 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI Y Sbjct: 67 KELYLLIAELIAFAY 81 >gi|158524090|gb|ABW71152.1| putative type III secretion apparatus protein [Vibrio parahaemolyticus] Length = 147 Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 64/141 (45%), Gaps = 7/141 (4%) Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157 LL ++ + +++ V++ + +++ G K I+ + + +SF K++ Sbjct: 10 LALLKLVMAVFEWVMINKAVISTESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLE 66 Query: 158 VGTIITI--SLTENYFTMLDFISA--NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 + ++ + + + + L ++ N +Y+ +++ + L++ + +D Sbjct: 67 LLFLLFLLKYVADVLGSQLYLLNEINNYPYFIYYLIYSIGAASVFYLVYGLCVGTVDFMA 126 Query: 214 SYHQWYSKLKMSKQEIKDEIK 234 + + K +M+ E+K+E+K Sbjct: 127 EKYHFLHKNRMTFTEMKNELK 147 >gi|185177884|pdb|3BZL|A Chain A, Crystal Structural Of Native Escu C-Terminal Domain gi|185177886|pdb|3BZL|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain gi|185177888|pdb|3BZO|A Chain A, Crystal Structural Of Native Escu C-Terminal Domain gi|185177894|pdb|3BZV|A Chain A, Crystal Structural Of The Mutated T264a Escu C-Terminal Domain gi|185177896|pdb|3BZX|A Chain A, Crystal Structure Of The Mutated H265a Escu C-Terminal Domain gi|185177898|pdb|3BZY|A Chain A, Crystal Structure Of The Mutated Y316d Escu C-Terminal Domain gi|185177900|pdb|3BZZ|A Chain A, Crystal Structural Of The Mutated R313t EscuSPAS C- Terminal Domain Length = 54 Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 MSK E+K E K + GNP IK ++ + + ++T+I+ N Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKN 54 >gi|183221054|ref|YP_001839050.1| hypothetical protein LEPBI_I1667 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911148|ref|YP_001962703.1| FhlB-like protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775824|gb|ABZ94125.1| FhlB-related protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779476|gb|ABZ97774.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 86 Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336 +AL Y E+ AP LVAK + L+A + +IA + + I ++ + ++L +P IP Sbjct: 6 VALAYNPNEDPAPKLVAKAEGLLASHLVRIAKDAGVFIVQDEMMVKTL-AHLPNGKEIPR 64 Query: 337 VFYKAVAQLI 346 Y+ VA + Sbjct: 65 ELYEVVASVF 74 >gi|167949063|ref|ZP_02536137.1| flagellar biosynthesis protein FlhB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 67 Score = 66.4 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353 PI E P LAR+++ +N +IP Y AVA+L+ ++ K Sbjct: 2 PIIESPMLARAIYFSTELNESIPAGLYLAVAKLLAYVFQLK 42 >gi|185177905|pdb|3C01|E Chain E, Crystal Structural Of Native Spas C-Terminal Domain gi|185177907|pdb|3C01|F Chain F, Crystal Structural Of Native Spas C-Terminal Domain gi|185177909|pdb|3C01|G Chain G, Crystal Structural Of Native Spas C-Terminal Domain gi|185177911|pdb|3C01|H Chain H, Crystal Structural Of Native Spas C-Terminal Domain Length = 98 Score = 66.0 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327 PTH + + + P++ N A +R A + +P+ + LARSLFK Sbjct: 1 PTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKT 56 >gi|255028553|ref|ZP_05300504.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28] Length = 78 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 30/64 (46%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASA 69 L Sbjct: 62 LKQP 65 >gi|313620099|gb|EFR91604.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378] Length = 80 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65 A DNKTE + ++I+ A NEGN S+E + S+L L FF I + L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61 Query: 66 LASATQRKLEDISHIVFLL 84 L + + + +L+ Sbjct: 62 LKQPPKLASMESYSLFYLM 80 >gi|88858080|ref|ZP_01132722.1| hypothetical protein PTD2_11859 [Pseudoalteromonas tunicata D2] gi|88819697|gb|EAR29510.1| hypothetical protein PTD2_11859 [Pseudoalteromonas tunicata D2] Length = 98 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+ L Y +AP + KG ++A+++ +A E NI I ++ L+ + KQ+ + IP Sbjct: 6 AIGLLYDGK--NAPSVSVKGFGVLAEEILALAKEKNILIHQDEGLSDVI-KQLELGQEIP 62 Query: 336 PVFYKAVAQLIYKIY 350 Y +A+LI Y Sbjct: 63 RELYLIIAELIAFSY 77 >gi|185177913|pdb|3C03|B Chain B, Crystal Structure Of The Escu C-Terminal Domain With P263a Mutation,Space Group P 1 21 1 Length = 54 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269 MSK E+K E K + GNP IK ++ + + ++T+I+ Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIV 52 >gi|185177902|pdb|3C00|A Chain A, Crystal Structural Of The Mutated G247t EscuSPAS C- Terminal Domain Length = 54 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 MSK E+K E K + GNP IK ++ + + ++T+I+ N Sbjct: 7 MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSTSLANNIKKSTVIVKN 54 >gi|306820966|ref|ZP_07454586.1| FlhB domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551080|gb|EFM39051.1| FlhB domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 91 Score = 65.2 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + +APV+ AKG +A M + A I + + L SL + I IP Sbjct: 14 AVALEYD-EQYNAPVVSAKGSGYVAMNMLEKARLDGISTYFDEDLLNSLMA-LSIGDEIP 71 Query: 336 PVFYKAVAQLIYKI 349 Y VA+++ + Sbjct: 72 YQLYDIVAKVLQYV 85 >gi|289606861|emb|CBI60977.1| unnamed protein product [Sordaria macrospora] Length = 87 Score = 64.8 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 MSE+ KTE+P+ K+++ A +G+ S+E +LA +L F + + + Sbjct: 1 MSED-----KTESPTQKRLDKAREDGDILKSKELGTALVVLAGCGWLAMFGPTLVAACKA 55 Query: 61 DLHVLLASATQRKLEDISHIVFLL 84 + + +ED L+ Sbjct: 56 VMTASFR-FGRADVEDFQPWRPLV 78 >gi|213025709|ref|ZP_03340156.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 119 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 43/103 (41%) Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 + +IP +LL ++ L+Q VL +KP+ ++ EG K+++S+ + + +K Sbjct: 17 GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLSALNPVEGAKKLFSMRTVKDTVK 76 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 + + + I + + ++ N I + Sbjct: 77 TLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAVIWRELLL 119 >gi|133872993|gb|ABO40489.1| EscU [Vibrio parahaemolyticus] Length = 54 Score = 64.1 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 NPTH + + Y PV++ +A + RK IPI E LAR++ Sbjct: 1 NPTHILVPVCYDPKIERRPVVLKICTESLALEERKRLEAMGIPIIEHIPLARAM 54 >gi|317009220|gb|ADU79800.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7] Length = 61 Score = 63.7 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA LI + F G ++ Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFLYGGWMALAR 56 Query: 61 DLHVL 65 + + Sbjct: 57 CIAMY 61 >gi|317012580|gb|ADU83188.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Lithuania75] Length = 61 Score = 63.3 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M+E + KTE PS+KKI+ A EGN P S E +LA L+ + F G ++ Sbjct: 1 MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFLYGGWMALAR 56 >gi|185177904|pdb|3C01|A Chain A, Crystal Structural Of Native Spas C-Terminal Domain gi|185177906|pdb|3C01|B Chain B, Crystal Structural Of Native Spas C-Terminal Domain gi|185177908|pdb|3C01|C Chain C, Crystal Structural Of Native Spas C-Terminal Domain gi|185177910|pdb|3C01|D Chain D, Crystal Structural Of Native Spas C-Terminal Domain Length = 48 Score = 63.3 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 28/48 (58%) Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 M K+E+K E+K+ GNP +K++++ + + ++ + +I+ N Sbjct: 1 MDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVAN 48 >gi|330893582|gb|EGH26243.1| type III secretion component protein HrcU [Pseudomonas syringae pv. mori str. 301020] Length = 83 Score = 63.3 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 38/82 (46%) Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S +K + +G + + + ++ +++ + + R +L +IL + + ++D Sbjct: 2 SILKAVAIGATLYMQVKPALGALILLANSDLTTYWHALVELFRHILRVILGLLLVVAMVD 61 Query: 211 IGWSYHQWYSKLKMSKQEIKDE 232 + KL+MS ++IK E Sbjct: 62 FAMQKYFHAKKLRMSHEDIKKE 83 >gi|213162232|ref|ZP_03347942.1| secretion system apparatus protein SsaU [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 83 Score = 62.9 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KK+ D EG S E + ++A +Y FF I + + L Sbjct: 3 EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62 Query: 69 ATQRKLEDISHIVFLLTH 86 + ++ + L Sbjct: 63 VNKPFSYALTQLSHALIE 80 >gi|291519579|emb|CBK74800.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio fibrisolvens 16/4] Length = 145 Score = 62.1 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%) Query: 4 NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52 + KTE P+SKK+ DA EG S+E ++L L F S Sbjct: 18 DGEGGEKTEQPTSKKLSDARKEGKVAKSKEIVNGIALLGFFFALRVFLS 66 >gi|330882956|gb|EGH17105.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 46 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL 47 MSE + + K++ S KK+ DA +G S++ IL C + + Sbjct: 1 MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCI 45 >gi|225374460|ref|ZP_03751681.1| hypothetical protein ROSEINA2194_00075 [Roseburia inulinivorans DSM 16841] gi|225213698|gb|EEG96052.1| hypothetical protein ROSEINA2194_00075 [Roseburia inulinivorans DSM 16841] Length = 67 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 +A+K+ A E+++P +++ LA +L ++ I AIPP Y+ VA+++ + Sbjct: 1 MAEKIIAKAKENDVPFYKDNKLAETL-SKLEIGDAIPPELYEVVAEILVFV 50 >gi|301026127|ref|ZP_07189601.1| conserved domain protein [Escherichia coli MS 196-1] gi|312972921|ref|ZP_07787094.1| surface presentation of antigens spaS domain protein [Escherichia coli 1827-70] gi|299879822|gb|EFI88033.1| conserved domain protein [Escherichia coli MS 196-1] gi|310332863|gb|EFQ00077.1| surface presentation of antigens spaS domain protein [Escherichia coli 1827-70] Length = 39 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251 +KM KQE+K E K+ GNP IK++++ R Sbjct: 1 MKDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 33 >gi|56964047|ref|YP_175778.1| flagellar biosynthesis protein [Bacillus clausii KSM-K16] gi|56910290|dbj|BAD64817.1| flagellar biosynthesis protein [Bacillus clausii KSM-K16] Length = 161 Score = 60.6 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A AL Y + AP LVAKG A+ M A + IP+ + L+ L + IP Sbjct: 9 AYALSYK-DGDVAPRLVAKGARKQAEAMVAEAKKQGIPVIKHQQLSEEL-AHLREMQFIP 66 Query: 336 PVFYKAVAQLIYKIYHK 352 Y+ A+L ++ Sbjct: 67 ESLYEVAAELFVFLHSL 83 >gi|332297553|ref|YP_004439475.1| FlhB domain protein [Treponema brennaborense DSM 12168] gi|332180656|gb|AEE16344.1| FlhB domain protein [Treponema brennaborense DSM 12168] Length = 98 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y DAP + + +A ++ +A E IP+ ++ LA L S +P Sbjct: 16 AVALQY-PAGADAPFIAVSAKGALADRVEALAKELGIPVKKDEILANVL-SVCDAGSYVP 73 Query: 336 PVFYKAVAQLIYKI 349 Y+A+A++ I Sbjct: 74 VQTYEALAKIFIFI 87 >gi|262276369|ref|ZP_06054178.1| hypothetical protein VHA_003354 [Grimontia hollisae CIP 101886] gi|262220177|gb|EEY71493.1| hypothetical protein VHA_003354 [Grimontia hollisae CIP 101886] Length = 97 Score = 60.2 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL+Y P + AKG + +A+ + + ++ I + +L L + + IP Sbjct: 7 AIALKYDGINT--PKVSAKGYDQLAEILIEEMEKNGGLIHSDEALMNWL-SALEVGDEIP 63 Query: 336 PVFYKAVAQLIYKIYHK 352 FY +A+LI ++ Sbjct: 64 EQFYLVIAELIAFAWYL 80 >gi|258626190|ref|ZP_05721038.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581545|gb|EEW06446.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 110 Score = 59.4 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 20 EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79 + A +G S+E + S ++ + L++F + + + L S + ++ DI Sbjct: 2 QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFTAMQRLF-SLDREEIFDIGK 60 Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126 + ++ ++ ++ L+ + + L P+ Sbjct: 61 LFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGLTFPLKRRCPN 107 >gi|313610165|gb|EFR85468.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL F2-208] Length = 38 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILA 42 A DNKTE + ++I+ A NEGN S+E + S+L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLI 38 >gi|213420256|ref|ZP_03353322.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 50 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 26/46 (56%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52 NKTE P+ K++ED+ +G + S++ + L + YL+ + S Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS 47 >gi|188595908|pdb|2VT1|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Spa40, The Specificity Switch For The Shigella Flexneri Type Iii Secretion System Length = 52 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%) Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271 + M KQEIK E + G+ K+R++ + + + + +++ N Sbjct: 2 DMMMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMN 52 >gi|331005471|ref|ZP_08328850.1| hypothetical protein IMCC1989_1995 [gamma proteobacterium IMCC1989] gi|330420747|gb|EGG95034.1| hypothetical protein IMCC1989_1995 [gamma proteobacterium IMCC1989] Length = 94 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAY--EHNIPIFEEPSLARSLFKQVPINSAI 334 + LRY + E P ++ KG A+ + + + I + LA+ L+K I++ I Sbjct: 12 VGLRYKKDEG-LPRVILKGAGHFAEDIIDKGHNLKKGPLIIQNELLAKQLYKMS-IDTEI 69 Query: 335 PPVFYKAVAQLIYKIY 350 P ++ VA ++ +Y Sbjct: 70 RPELFELVATVLTHLY 85 >gi|313639094|gb|EFS04070.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL S4-171] Length = 42 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 6 APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL 44 A DNKTE + ++I+ A NEGN S+E + S+L Sbjct: 2 AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVA 40 >gi|213021866|ref|ZP_03336313.1| surface presentation of antigens protein SpaS [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 61 Score = 56.4 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 26/46 (56%) Query: 7 PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52 NKTE P+ K++ED+ +G + S++ + L + YL+ + S Sbjct: 2 SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS 47 >gi|229916629|ref|YP_002885275.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp. AT1b] gi|229468058|gb|ACQ69830.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp. AT1b] Length = 96 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A +RY +T + APV+VA+G +A+K+ + A + + + SL + + AIP Sbjct: 13 AAVVRYDETTDKAPVVVARGTGAVAEKILQEARARGVAVENDHSLLGH-LLDLDLGDAIP 71 Query: 336 PVFYKAVAQLI 346 P Y +A+++ Sbjct: 72 PQLYDVMAEVL 82 >gi|228900352|ref|ZP_04064581.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222] gi|228859239|gb|EEN03670.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222] Length = 44 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + E LARSL+ QV + IP Y AV +++ + Sbjct: 1 MVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 38 >gi|315453181|ref|YP_004073451.1| flagellar biosynthesis protein flhB2 [Helicobacter felis ATCC 49179] gi|315132233|emb|CBY82861.1| flagellar biosynthesis protein flhB2 [Helicobacter felis ATCC 49179] Length = 88 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y ++ AP +VA G ++A+ + A ++P+F +L SL V +++ IP Sbjct: 6 AVALAYNVGQDSAPKVVASGVGVVARAIVDKAKAFDVPLFCNEALVESLL-DVRLDTPIP 64 Query: 336 PVFYKAVAQLIYKI 349 P Y +V ++ + Sbjct: 65 PELYASVVEVFIWL 78 >gi|238759387|ref|ZP_04620552.1| hypothetical protein yaldo0001_4790 [Yersinia aldovae ATCC 35236] gi|238702414|gb|EEP94966.1| hypothetical protein yaldo0001_4790 [Yersinia aldovae ATCC 35236] Length = 103 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Query: 9 NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68 KTE P+ KKI D+ +G + S++ ++A + F + + S L +L S Sbjct: 3 EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAVSGF--SSLMGLGSLLQKILLS 60 Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103 + +E LL L V+P LL Sbjct: 61 PSAIGVE------ALLDKLYSLFLLAVVPVLLACF 89 >gi|331005339|ref|ZP_08328725.1| hypothetical protein IMCC1989_1712 [gamma proteobacterium IMCC1989] gi|330420854|gb|EGG95134.1| hypothetical protein IMCC1989_1712 [gamma proteobacterium IMCC1989] Length = 105 Score = 52.5 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A+AL Y + AP + AKG+ A+++ IA EH + + E +L + + IP Sbjct: 21 AVALFYD--GDSAPTISAKGEGNTAQEIIDIAREHGVTLCENKALLEL-LMTLELGEEIP 77 Query: 336 PVFY 339 Y Sbjct: 78 ENLY 81 >gi|229138470|ref|ZP_04267059.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26] gi|228645007|gb|EEL01250.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26] Length = 44 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%) Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + E LARSL+ QV + AIP Y AV +++ + Sbjct: 1 MVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 38 >gi|312876516|ref|ZP_07736499.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor lactoaceticus 6A] gi|311796727|gb|EFR13073.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor lactoaceticus 6A] Length = 52 Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 20/37 (54%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY 46 KTE + +K ++A G SRE + ++L +++ Sbjct: 16 KTEKATRRKRQEARKRGMVAKSREVTSAFALLISVLF 52 >gi|323183410|gb|EFZ68807.1| surface presentation of antigens protein spaS domain protein [Escherichia coli 1357] Length = 98 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 ++ + N +A +RK A E IPI + LAR ++ + Sbjct: 1 MISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 45 >gi|172058438|ref|YP_001814898.1| flagellar biosynthesis, FlhS-related protein [Exiguobacterium sibiricum 255-15] gi|171990959|gb|ACB61881.1| flagellar biosynthesis, FlhS-related protein [Exiguobacterium sibiricum 255-15] Length = 96 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A LRY + +AP++VA+ A ++ + A + I ++ SL + + +AIP Sbjct: 13 AAVLRYDEASGNAPIVVARATGAAADRILQEARASGVAIEQDTSLLGH-LLDLDLGTAIP 71 Query: 336 PVFYKAVA 343 P Y +A Sbjct: 72 PQLYDVMA 79 >gi|313610159|gb|EFR85464.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL F2-208] Length = 53 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346 ++A +P+ LARS++ + I YK V +++ Sbjct: 1 QVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 42 >gi|7350919|gb|AAF61287.1| HrpC1 [Xanthomonas oryzae pv. oryzae] Length = 21 Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 5/26 (19%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEG 26 MSE KTE P+ KK+ DA +G Sbjct: 1 MSE-----EKTEKPTEKKLRDARKDG 21 >gi|229088879|ref|ZP_04220342.1| Na+/H+ antiporter NhaC [Bacillus cereus Rock3-44] gi|228694438|gb|EEL47951.1| Na+/H+ antiporter NhaC [Bacillus cereus Rock3-44] Length = 480 Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 59/184 (32%), Gaps = 4/184 (2%) Query: 28 APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87 S A+L + LI F + + ++ + ++ ++ T Sbjct: 65 IAKSMSATLILITVGALIGTWMFSGTIPMMIFYGIELINPNYLFVTAFLVTALISTFTGT 124 Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S ++ V ++ M S I V+ +S + + + +NL Sbjct: 125 SWGSAGTVGVAIMGIAMVQGVSLPITAGAVVAGAFFGDKLSPLSDTTNLSPVVAGSNLYE 184 Query: 148 FMKSFVK----IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 ++ + L+G ++ + + +T F ++ +++I+ + Sbjct: 185 HIRHLLYTTIPASLIGLVVYFIVGWSTYTSNAFDREKIEAMTSALTAMFHWNVLLIVPVL 244 Query: 204 ATLT 207 L Sbjct: 245 IVLV 248 >gi|332878715|ref|ZP_08446432.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683352|gb|EGJ56232.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 471 Score = 44.4 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 15/195 (7%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-------VI 96 ++ ++FF I V + E+ S + FLL + L + I Sbjct: 125 VLSIVFFAFIAIRIVGLLWAQYFDYGVRILFEEESIVFFLLVPIILLGFSVSQRQQFSFI 184 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM-----K- 150 + + + ++ ++ KP F ++L +G +L + K Sbjct: 185 AICFKGFLLLLVANVVFYSFAISAEGTKPFFSFLTLNKGYLSDNEGFSLYEILFWTRFKH 244 Query: 151 -SFVK-IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 SF+ IILV + L + Y T++ +++L F + + + I+ + + Sbjct: 245 PSFLSWIILVVGGLGFFLWKKYRTIITTPEVIAYALLLFGFIFMMQARVNIIAYFVVIAF 304 Query: 209 LDIGWSYHQWYSKLK 223 H + +LK Sbjct: 305 FVYLSVTHLFSKRLK 319 >gi|323342205|ref|ZP_08082437.1| hypothetical protein HMPREF0357_10617 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463317|gb|EFY08511.1| hypothetical protein HMPREF0357_10617 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 603 Score = 44.4 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 23/180 (12%) Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG--- 98 A + + F + S + L + + ++F+ ++ + + IPG Sbjct: 45 AVTVLFIRFGLEKPQVLMSSAYTLSFALKFVLVSIPVGLLFMFLQAIINNTIIFIPGDYV 104 Query: 99 -----------LLLFMMFGIGSYLIQRIPVLNLNHVKPS---FKRVSLREGIKRIYSINN 144 L++ ++ G + R + P F +S +G Sbjct: 105 RTRGHRIVNSILVILIVIGAAFFFFSRWFTAFFGALTPEQFIFNLISPVKGTGDSV---- 160 Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 + +K VK LVG + + L L + ++ ++I I+L + Sbjct: 161 MTELLKPIVKTALVGIVFALILLNKKD--LHIFRKHRREVITAKQLRTSTLIIGIVLALV 218 >gi|307166106|gb|EFN60358.1| Chitin synthase 8 [Camponotus floridanus] Length = 1627 Score = 44.0 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 85/216 (39%), Gaps = 24/216 (11%) Query: 57 SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG--IGSYLIQR 114 ++ + + +L+ + K+ D ++++ + L ++ PG + M+ G + ++ I Sbjct: 894 TIANIMDLLMDAKRTIKINDNISLLYIFYQILLMGGTILGPGTIFLMLVGAFVAAFKIDN 953 Query: 115 IPVLNLNHVKPSFKRV--SLREGIKRIYSINNLVNFMKSFVKIILVG------------- 159 N + + + ++ L + ++VG Sbjct: 954 WTSFYYNIIPILLFMIVCFTCKANMQLLCAQILSTAYAMIMMAVIVGTALQLGEDGIGSP 1013 Query: 160 -TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 I ISL+ ++F I+ + + + +LL + ++ L++ S+ Sbjct: 1014 SAIFLISLSSSFFIAACLHPQEFWCIVPGIIYLLSIPCMYLLLILYSIINLNVV-SWGTR 1072 Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254 + K +K+E++ E +++ + ++K+ +S + Sbjct: 1073 EVQTKKTKKELEQEKREAE-----EAKRKAKQKSLL 1103 >gi|168180065|ref|ZP_02614729.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum NCTC 2916] gi|182669160|gb|EDT81136.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum NCTC 2916] Length = 629 Score = 43.7 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ ++ + +L K + IK +SI LV+ + Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180 K+F+ I + +I S+ Y M F++ + Sbjct: 159 KTFILIYFIVSISGASIIYRYELMDLFMAES 189 >gi|170017166|ref|YP_001728085.1| putative glycerophosphodiester phosphodiesterase [Leuconostoc citreum KM20] gi|169804023|gb|ACA82641.1| Putative glycerophosphodiester phosphodiesterase [Leuconostoc citreum KM20] Length = 616 Score = 43.7 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 73/190 (38%), Gaps = 6/190 (3%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 + + ++ + I + + + + ++I+ +L + +A ++ Sbjct: 31 WFAYFFLVLAVNSLIINLILPICNYVMRFILYVNDIPFLSYTNILLILIYQPFAAIEIIF 90 Query: 97 PGLLLFMMFGI-GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 ++LF + S+LIQ + + + H +++ + + ++ NF+ Sbjct: 91 LVIVLFFGTFLHFSFLIQGVMYIKVYH---RLDWINIIKITGKDLGKISVFNFLIYAFYF 147 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 +L+ I + + + + + IL + + V I I+ +L +L + Sbjct: 148 VLILPISGVFFKSPFISKVKLPNFLLDFILSNTILSTLLVAIYIICLYFSLRMLMVLP-- 205 Query: 216 HQWYSKLKMS 225 ++ K K+S Sbjct: 206 LTFFEKQKIS 215 >gi|226948671|ref|YP_002803762.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum A2 str. Kyoto] gi|226843883|gb|ACO86549.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum A2 str. Kyoto] Length = 629 Score = 43.7 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ ++ + +L K + IK +SI LV+ + Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180 K+F+ I + +I S+ Y M F++ + Sbjct: 159 KTFILIYFIVSISGASIIYRYELMDLFMAES 189 >gi|320202502|gb|EFW77072.1| surface presentation of antigens protein SpaS [Escherichia coli EC4100B] Length = 89 Score = 43.3 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 +A +RK A E IPI + LAR ++ + Sbjct: 1 MALGVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 36 >gi|148379368|ref|YP_001253909.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum A str. ATCC 3502] gi|153932651|ref|YP_001383744.1| peptide ABC transporter permease [Clostridium botulinum A str. ATCC 19397] gi|153936934|ref|YP_001387294.1| peptide ABC transporter permease [Clostridium botulinum A str. Hall] gi|148288852|emb|CAL82936.1| putative ABC transporter, permease protein [Clostridium botulinum A str. ATCC 3502] gi|152928695|gb|ABS34195.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum A str. ATCC 19397] gi|152932848|gb|ABS38347.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum A str. Hall] Length = 629 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ ++ + +L K + IK +SI LV+ + Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180 K+F+ I + +I S+ Y + F++ + Sbjct: 159 KTFILIYFIVSISGASIIYRYELIDLFMAES 189 >gi|170759534|ref|YP_001786781.1| peptide ABC transporter permease [Clostridium botulinum A3 str. Loch Maree] gi|169406523|gb|ACA54934.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum A3 str. Loch Maree] Length = 629 Score = 42.9 bits (100), Expect = 0.069, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ ++ + +L K + IK +SI LV+ + Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180 K+F+ I + +I S+ Y + F++ + Sbjct: 159 KTFILIYFIVSISGASIIYRYELIDLFMAES 189 >gi|186682344|ref|YP_001865540.1| hypothetical protein Npun_F1945 [Nostoc punctiforme PCC 73102] gi|186464796|gb|ACC80597.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102] Length = 288 Score = 42.9 bits (100), Expect = 0.073, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 15/154 (9%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI-VFLLTHLSLSAS 92 F+S+L L LFF L + + + + + + Sbjct: 12 LGKFTSVLGLLGAALFFAGWIYRWSYFYFFQLELNTLDLPAQSFLIVPLQIFLGDGWTIC 71 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL------- 145 + I + + +LI+ I ++ + R+ KR ++ L Sbjct: 72 KTAIAFFITAIAIQATLWLIKIISETVVSASQLLLSRIISATQYKRSWTAKQLKSLAEFG 131 Query: 146 ------VNFMKSFV-KIILVGTIITISLTENYFT 172 V F++S V +I++V ++ + + Sbjct: 132 FGQLRSVEFLRSLVNEIVIVSWVLIVIFWLARWQ 165 >gi|330885029|gb|EGH19178.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 39 Score = 42.9 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 14/35 (40%) Query: 18 KIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52 K+ DA +G S++ IL C + + Sbjct: 1 KLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLP 35 >gi|168184288|ref|ZP_02618952.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum Bf] gi|237794744|ref|YP_002862296.1| peptide ABC transporter permease [Clostridium botulinum Ba4 str. 657] gi|182672634|gb|EDT84595.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum Bf] gi|229260903|gb|ACQ51936.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum Ba4 str. 657] Length = 629 Score = 42.9 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 72/180 (40%), Gaps = 20/180 (11%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKSFSGASVIIALFVFIFIWYSNSFFIKKRKKEIGLYSMLGIKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ + + +L F+ + IK +SI L + + Sbjct: 108 ---ETMTMGVIALAIGIFLGAFFSKGFILVF------FRLIDAENIIKTGFSIKALFSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN-----PHSILYHAFFTVRKVLIMILLFIA 204 K+F+ I V +I S+ Y + F++ + P + A ++ +L +L+I Sbjct: 159 KTFILIYFVVSISGASIIYRYELIDLFMAESKREKEPKASKVKAVLSLIFLLGGYILYIL 218 >gi|23098997|ref|NP_692463.1| flagellar biosynthesis [Oceanobacillus iheyensis HTE831] gi|22777225|dbj|BAC13498.1| flagellar biosynthesis [Oceanobacillus iheyensis HTE831] Length = 41 Score = 42.5 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYH 351 + ++ IN +IP Y AVA++ +Y Sbjct: 4 ILAELNINESIPDELYMAVAEVFAFVYQ 31 >gi|62261263|gb|AAX77972.1| unknown protein [synthetic construct] Length = 548 Score = 42.5 bits (99), Expect = 0.100, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 65/187 (34%), Gaps = 21/187 (11%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 137 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 192 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ V Sbjct: 193 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKMSWFKGFVV 252 Query: 148 FMKSFVKIILVG--------------TIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 + + + I ++G I ++L + ML ++ ++ Sbjct: 253 LLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERKRMIVALILIIQ 312 Query: 194 KVLIMIL 200 ++ +L Sbjct: 313 GIIFFVL 319 >gi|229823760|ref|ZP_04449829.1| hypothetical protein GCWU000282_01062 [Catonella morbi ATCC 51271] gi|229786799|gb|EEP22913.1| hypothetical protein GCWU000282_01062 [Catonella morbi ATCC 51271] Length = 447 Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 14/205 (6%) Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84 +GN +++ + S + L G L L A Q K SH + L Sbjct: 89 KGNTASWKDSWVLLSACLAFLSLSLALRYG-------LQWLKAQDDQNKYFAASHGLIFL 141 Query: 85 THLSLSASRLVIP---GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 L +P G+ ++ + +L + + F R+ R + + Sbjct: 142 AQGVLLLLGTKLPYEWGVAALVVAILAGWLAPFYFLRDRQVPALDFDRLKDRTSLMTMMY 201 Query: 142 INNLVNF----MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 LV S L+G I+ L +Y +D + ++ ++I Sbjct: 202 SAGLVVLSLGTFLSLETTTLLGLILVACLVLHYKVQIDRVPQGADQSAAGFIYSHYVIMI 261 Query: 198 MILLFIATLTVLDIGWSYHQWYSKL 222 + L I L + L Sbjct: 262 GLSLVIIALGGFMTPYVRISHIVDL 286 >gi|159480832|ref|XP_001698486.1| xanthine/uracil/vitamin C permease [Chlamydomonas reinhardtii] gi|158282226|gb|EDP07979.1| xanthine/uracil/vitamin C permease [Chlamydomonas reinhardtii] Length = 660 Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 11/169 (6%) Query: 24 NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83 +GN P S ++ L + + + + + I +F Sbjct: 399 EKGNMPRS---NMAFIADGFGTMLGGLLGSSALTTYVESASAVREGGRTGITAIVCALFF 455 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 LS VIP + + + LI V +N + + Sbjct: 456 FAACFLSPLFSVIPAIATGPILALIGVLIFMPSVFEINWH----DITDAIPAFVTMLGMP 511 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192 F + I+ G ++ + + + + DF + P + LY + T Sbjct: 512 ----FTHNIAYGIIGGLLVHVIIKFFTYQLFDFQHSWPGAALYRRWATA 556 >gi|329726145|gb|EGG62617.1| putative membrane protein [Staphylococcus epidermidis VCU144] Length = 383 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 35/248 (14%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +G S ILA + +LF I + + L+ L S L+ I Sbjct: 108 AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 158 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138 + + + ++ L+ + I + + + R +L+EG K Sbjct: 159 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 218 Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 I F + I L+ +II L + +S + V VL Sbjct: 219 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 278 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257 + L +I +++ G+ +K++++ + + Sbjct: 279 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRRHKNKDINKGN 316 Query: 258 MMEATSRA 265 + + Sbjct: 317 VNDKVDTT 324 >gi|27468667|ref|NP_765304.1| lytic regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|293366114|ref|ZP_06612802.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27316214|gb|AAO05348.1|AE016749_294 lytic regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|291319837|gb|EFE60195.1| conserved hypothetical protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329735699|gb|EGG71982.1| hypothetical protein SEVCU028_1481 [Staphylococcus epidermidis VCU028] Length = 334 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 35/247 (14%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +G S ILA + +LF I + + L+ L S L+ I Sbjct: 59 AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 109 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138 + + + ++ L+ + I + + + R +L+EG K Sbjct: 110 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 169 Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 I F + I L+ +II L + +S + V VL Sbjct: 170 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 229 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257 + L +I +++ G+ +K++++ + + Sbjct: 230 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRRHKNKDINKGN 267 Query: 258 MMEATSR 264 + + Sbjct: 268 VNDKVDT 274 >gi|332671779|ref|YP_004454787.1| LacI family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340817|gb|AEE47400.1| transcriptional regulator, LacI family [Cellulomonas fimi ATCC 484] Length = 340 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL--ALRYIQTENDAPVLVAKGQ 296 + + R++ A ++ A ++ + TH A+R + P +V Sbjct: 197 DAHLTARERREAFVGALAELGIEVPPAAVVASAFTHEGGEDAMRTLLRSGPLPEVVFAVN 256 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLA 321 +++A A + + + + +LA Sbjct: 257 DVMALGALAAARDAGVEVPRDVALA 281 >gi|57867657|ref|YP_189322.1| lytic regulatory protein [Staphylococcus epidermidis RP62A] gi|251812139|ref|ZP_04826612.1| possible lytic regulatory protein [Staphylococcus epidermidis BCM-HMP0060] gi|57638315|gb|AAW55103.1| lytic regulatory protein, putative [Staphylococcus epidermidis RP62A] gi|251804319|gb|EES56976.1| possible lytic regulatory protein [Staphylococcus epidermidis BCM-HMP0060] gi|329734182|gb|EGG70500.1| putative membrane protein [Staphylococcus epidermidis VCU045] Length = 383 Score = 42.1 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 35/247 (14%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +G S ILA + +LF I + + L+ L S L+ I Sbjct: 108 AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 158 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138 + + + ++ L+ + I + + + R +L+EG K Sbjct: 159 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 218 Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 I F + I L+ +II L + +S + V VL Sbjct: 219 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 278 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257 + L +I +++ G+ +K++++ + + Sbjct: 279 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRRHKNKDINKGN 316 Query: 258 MMEATSR 264 + + Sbjct: 317 VNDKVDT 323 >gi|319399630|gb|EFV87885.1| lytic regulatory protein [Staphylococcus epidermidis FRI909] Length = 334 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 35/248 (14%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +G S ILA + +LF I + + L+ L S L+ I Sbjct: 59 AFKKGKYAKS-------VILALITLVLFIIIVLILMLLNKLYNLALSPLFIGLQQ--SIS 109 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138 + + + ++ L+ + I + + + R +L+EG K Sbjct: 110 GYENPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 169 Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 I F + I L+ +II L + +S + V VL Sbjct: 170 IKNGKKTWFKFFIGVLLIGLLASIINRPLLFGVQYLTSSMSQMVAQTIVIIARIVSIVLR 229 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257 + L +I +++ +K G+ +K++++ + + Sbjct: 230 LCLYYILIFGIINYF----------------VKR------GDQPVKSKRRHKNKDVNKDT 267 Query: 258 MMEATSRA 265 + + Sbjct: 268 VNDKVDTT 275 >gi|242241557|ref|ZP_04796002.1| lytic regulatory protein [Staphylococcus epidermidis W23144] gi|242235011|gb|EES37322.1| lytic regulatory protein [Staphylococcus epidermidis W23144] Length = 334 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 35/248 (14%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +G S ILA + +LF I + + L+ L S L+ I Sbjct: 59 AFKKGKYAKS-------VILALITLVLFIIIVLILMLLNKLYNLALSPLFIGLQQ--SIS 109 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138 + + + ++ L+ + I + + + R +L+EG K Sbjct: 110 GYENPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 169 Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 I F + I L+ +II L + +S + V VL Sbjct: 170 IKNGKKTWFKFFIGVLLIGLLASIINRPLLFGVQYLTSSMSQMVAQTIVIIARIVSIVLR 229 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257 + L +I +++ +K G+ +K++++ + + Sbjct: 230 LCLYYILIFGIINYF----------------VKR------GDQPVKSKRRHKNKDVNKDT 267 Query: 258 MMEATSRA 265 + + Sbjct: 268 VNDKVDTT 275 >gi|294674738|ref|YP_003575354.1| sensor histidine kinase [Prevotella ruminicola 23] gi|294473211|gb|ADE82600.1| putative sensor histidine kinase [Prevotella ruminicola 23] Length = 349 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 20/166 (12%) Query: 79 HIVFLLTHLSLSASRLVIPGLLLFMM-----FGIGSYLIQRIPVLNLNHVKP-SFKRVSL 132 +I LLT L + A ++ L F+ S+ + + + + +F Sbjct: 8 NIWLLLTQLGVWAIIILAMPLATFLSTQDLHATKTSFFVVWGILHSPFVIYFINFYLFGP 67 Query: 133 REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192 +R + L N + IL+ L + + I+ P+ + + Sbjct: 68 FLFFRRRFWWFALCNLL-----TILLMNSQFFMLWFHRDRIPHEITMTPNMWIGIFAGML 122 Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE-IKQSY 237 +L+ + + + + + +++ KQ++KDE K + Sbjct: 123 LFMLLNCFVGAIAIGI--------RHFMRIRQIKQQLKDEKAKNTE 160 >gi|322805708|emb|CBZ03273.1| ABC transporter, permease protein [Clostridium botulinum H04402 065] Length = 629 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ ++ + +L K + IK +SI LV+ + Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFYKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180 K+F+ I + +I S+ Y + F++ + Sbjct: 159 KTFILIYFIVSISGASIIYRYELIDLFMAES 189 >gi|257791170|ref|YP_003181776.1| hypothetical protein Elen_1418 [Eggerthella lenta DSM 2243] gi|317488097|ref|ZP_07946674.1| hypothetical protein HMPREF1023_00372 [Eggerthella sp. 1_3_56FAA] gi|257475067|gb|ACV55387.1| protein of unknown function DUF214 [Eggerthella lenta DSM 2243] gi|316912805|gb|EFV34337.1| hypothetical protein HMPREF1023_00372 [Eggerthella sp. 1_3_56FAA] Length = 730 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 78/224 (34%), Gaps = 30/224 (13%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS-HIVFLLTHLSLS 90 + +FS ++AC++ L ++ G + + + S ++ LL +++ Sbjct: 60 QMLGMFSVVIACVLGFLVLYANGF--LIRRRKQEFGTYLMLGMNPSSVSVIVLLETVAVG 117 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR------------VSLREGIKR 138 L + L F + S++ + + + + F + G+ Sbjct: 118 LVSLGVGLALGFALSQGLSFVTAGLFNIQMEQYRFVFSTNAFLLTLGCFVLIFAVTGLFN 177 Query: 139 IYSIN--NLVNFMKSFVK----------IILVGTIITI-SLTENYFTMLDFISANPHSIL 185 SI L++ + + K I LVG + + + +Y T++D Sbjct: 178 TLSIRRYKLIDLLSARSKNARFRVRNPWISLVGFLAAVAVIAWSYVTLVDNGLMQFDEGF 237 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM--SKQ 227 + A + + +A + I + ++ L M ++Q Sbjct: 238 WRATALMVAGTFLFFWSLAGFALAAIERTRGIYFKGLAMFTTRQ 281 >gi|325832891|ref|ZP_08165564.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1] gi|325485756|gb|EGC88220.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1] Length = 730 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 78/224 (34%), Gaps = 30/224 (13%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS-HIVFLLTHLSLS 90 + +FS ++AC++ L ++ G + + + S ++ LL +++ Sbjct: 60 QMLGMFSVVIACVLGFLVLYANGF--LIRRRKQEFGTYLMLGMNPSSVSVIVLLETVAVG 117 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR------------VSLREGIKR 138 L + L F + S++ + + + + F + G+ Sbjct: 118 LVSLGVGLALGFALSQGLSFVTAGLFNIQMEQYRFVFSTNAFLLTLGYFVLIFAVTGLFN 177 Query: 139 IYSIN--NLVNFMKSFVK----------IILVGTIITI-SLTENYFTMLDFISANPHSIL 185 SI L++ + + K I LVG + + + +Y T++D Sbjct: 178 TLSIRRYKLIDLLSARSKNARFRVRNPWISLVGFLAAVAVIAWSYVTLVDNGLMQFDEGF 237 Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM--SKQ 227 + A + + +A + I + ++ L M ++Q Sbjct: 238 WRATALMVAGTFLFFWSLAGFALAAIERTRGIYFKGLAMFTTRQ 281 >gi|322435980|ref|YP_004218192.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX9] gi|321163707|gb|ADW69412.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX9] Length = 698 Score = 41.7 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 57/182 (31%), Gaps = 26/182 (14%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 +F ++LA ++L G + V + + K + + F ++ A+ Sbjct: 386 PVFIALLASGLFLFALSLAGQFDVGLSMTSV--GGDLAKKQGYTGSFFTGVLATIVATPC 443 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHV-----------KPSFKRVSLREGIKRIYSIN 143 P + + F + V + +P++ R+ R G Sbjct: 444 TAPLMGAAIGFALAQPAGITFAVFTALGLGLAVPYLVLSFQPAWTRILPRPG-------- 495 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 + +K + L T+I ++ SA P H + L++ + Sbjct: 496 AWMEVLKQLTAVPLFATVIWLAWVYG-----QLFSAQPGEAADHIARLLCCFLVLAIAGW 550 Query: 204 AT 205 A Sbjct: 551 AL 552 >gi|323703395|ref|ZP_08115044.1| protein of unknown function DUF583 [Desulfotomaculum nigrificans DSM 574] gi|323531664|gb|EGB21554.1| protein of unknown function DUF583 [Desulfotomaculum nigrificans DSM 574] Length = 485 Score = 41.7 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 29/220 (13%) Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85 G + R+ + +++ I +L GI + + +E+IS Sbjct: 286 GQVIV-RDNNPLFTLVLLWIPVLL----GILATLFITYGFFTKDATTSIENISGQPLRSI 340 Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK--RIYSIN 143 L + L +P + L + IG + + + + V + G K + +N Sbjct: 341 WLGFVSVVLGLPLMFLLFISIIGIPVSISLGIALILASLVGLSGVCQKIGQKVSAAFGLN 400 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 +L + + I+LV +I I IL V ++ + + + Sbjct: 401 SLSQIKEMLLGILLVAHLIWI------------------PILGWIVLLVLWLMGLGSVTM 442 Query: 204 ATLTVLDIGWSYHQWYSKLK----MSKQEIKDEIKQSYGN 239 L W + K + S+ +++E K S N Sbjct: 443 LWWPRLKTRWQSWRQSRKTRDTGNQSETTVEEEPKDSDEN 482 >gi|229160759|ref|ZP_04288751.1| Na+/H+ antiporter NhaC [Bacillus cereus R309803] gi|228622774|gb|EEK79608.1| Na+/H+ antiporter NhaC [Bacillus cereus R309803] Length = 460 Score = 41.3 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 60/183 (32%), Gaps = 4/183 (2%) Query: 28 APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87 S A+L + LI F V + ++ + ++ ++ T Sbjct: 45 ITKSMSATLILITVGMLIGTWMFSGTIPMMVFYGIELINPNYLFVTAFIVTALISTFTGT 104 Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S ++ V ++ M S I V+ +S + + + +NL Sbjct: 105 SWGSAGTVGVAIMGIAMVQGVSLPITAGAVVAGAFFGDKLSPLSDTTNLSPVVAGSNLYE 164 Query: 148 FMKSFVKIIL----VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 ++ + + +G ++ + ++ +T F ++ +++I+ + Sbjct: 165 HIRHLLYTTIPASFIGLVVYFIVGKSTYTSNAFDKGKIEAMTSALTAMFHWNVLLIVPIL 224 Query: 204 ATL 206 L Sbjct: 225 IVL 227 >gi|227543300|ref|ZP_03973349.1| hypothetical protein HMPREF0293_2619 [Corynebacterium glucuronolyticum ATCC 51866] gi|227180913|gb|EEI61885.1| hypothetical protein HMPREF0293_2619 [Corynebacterium glucuronolyticum ATCC 51866] Length = 396 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 13/132 (9%) Query: 113 QRIPVLNLNHVKPSFKR----VSLREGIKRIYSINNLV--NFMKSFVKIILVGTIITISL 166 V + + + P + R + L G+ + + +L ++ + + ++G I+ + L Sbjct: 170 GFGGVDSNDPLPPDWDRRRKIILLVAGLA--FPVLSLFSGDYAGQMLGVTVIGGILGVVL 227 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI---ATLTVLDIGWSYHQWYSKLK 223 + I+ A+ V L + + VL + W +L+ Sbjct: 228 VWMNYEHYKSGGKAHGCIVETAWQMVFFGLWFYAIAFNFPMGVAVLYVAIKRRVWARQLR 287 Query: 224 --MSKQEIKDEI 233 M KQ+ + E Sbjct: 288 REMKKQQEEHEY 299 >gi|145223704|ref|YP_001134382.1| apolipoprotein N-acyltransferase [Mycobacterium gilvum PYR-GCK] gi|145216190|gb|ABP45594.1| apolipoprotein N-acyltransferase [Mycobacterium gilvum PYR-GCK] Length = 560 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 19/216 (8%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M E A + E P+ A G A + R L ++I+A L + F G + + Sbjct: 1 MGETAADADAPERPT-----RARRFGQAVVDRLPRLTAAIVAGLALCVSFPPFGWWYIAI 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--LLFMMFGIGSYLIQRIPVL 118 +L R+ ++ L+ ++P + L+ + + +++ + Sbjct: 56 LAFAVLGWVLTRERTTVAGGAGYGLLFGLAFYVPLLPWISGLVGAVPWLALSVVEALFCA 115 Query: 119 NLNHVKPSFKRVS-LREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFTMLDF 176 + +R+ ++S ++KS V ++ S +E+ L + Sbjct: 116 LFGMLAVVVRRLPGWPLWFAGLWSAQ---EWLKSTVPFGGFPWGVVGFSQSESPLLPLAY 172 Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 + P + VL+ L L V D Sbjct: 173 VGGAP-------LVSFALVLLAFSLGALVLGVADWW 201 >gi|332184002|gb|AEE26256.1| Di/tripeptide permease DtpA [Francisella cf. novicida 3523] Length = 512 Score = 41.0 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 45/206 (21%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 112 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 167 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 168 VSMLLTPIIAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 219 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 S+ K ++L+G I I + N ++ I++ IA Sbjct: 220 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTS-------------------IVVVIAI 257 Query: 206 LTVLDIGWSYHQWYSKLKMSKQEIKD 231 L ++ K S+ E K Sbjct: 258 LALIYFFIQMF------KQSEHERKR 277 >gi|134301862|ref|YP_001121831.1| amino acid/peptide transporter (peptide:H+ symporter) [Francisella tularensis subsp. tularensis WY96-3418] gi|134049639|gb|ABO46710.1| amino acid/peptide transporter (Peptide:H+ symporter) [Francisella tularensis subsp. tularensis WY96-3418] Length = 513 Score = 41.0 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|328676919|gb|AEB27789.1| Di/tripeptide permease DtpA [Francisella cf. novicida Fx1] Length = 513 Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|134094671|ref|YP_001099746.1| hypothetical protein HEAR1448 [Herminiimonas arsenicoxydans] gi|133738574|emb|CAL61619.1| Conserved hypothetical protein, putative membrane protein [Herminiimonas arsenicoxydans] Length = 308 Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 VK I + +L L + ++ S L ++ K ++++ + + Sbjct: 133 VKFIFF-DALGAALWSGSAIFLGSLFSSAVSDLLDILASLGKWGLVLVAVALAIYIARKW 191 Query: 213 WSYHQWYSKLKM---SKQEIKDEIKQSYGNP 240 W H + L+M S E+ +KQ GNP Sbjct: 192 WQRHSFLKDLRMARISVDELDQLLKQ--GNP 220 >gi|118497424|ref|YP_898474.1| proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter [Francisella tularensis subsp. novicida U112] gi|195536114|ref|ZP_03079121.1| proton-dependent oligopeptide transport [Francisella tularensis subsp. novicida FTE] gi|254374245|ref|ZP_04989727.1| proton-dependent oligopeptide transporter family protein [Francisella novicida GA99-3548] gi|118423330|gb|ABK89720.1| proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter [Francisella novicida U112] gi|151571965|gb|EDN37619.1| proton-dependent oligopeptide transporter family protein [Francisella novicida GA99-3548] gi|194372591|gb|EDX27302.1| proton-dependent oligopeptide transport [Francisella tularensis subsp. novicida FTE] Length = 513 Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|312983945|ref|ZP_07791294.1| amino acid/peptide transporter [Lactobacillus crispatus CTV-05] gi|310894622|gb|EFQ43695.1| amino acid/peptide transporter [Lactobacillus crispatus CTV-05] Length = 497 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 12/179 (6%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + L I L+ + + SD+ L S R+ + I +L + Sbjct: 106 LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 165 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146 ++P F I + +L + F V G K+ S +L Sbjct: 166 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDR 225 Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 + + + +K +++G ++ + M F N +++ + I + + Sbjct: 226 GDLL-NIIKWVVIGFVVIALV---LAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 280 >gi|262046119|ref|ZP_06019082.1| di-tripeptide transporter [Lactobacillus crispatus MV-3A-US] gi|260573449|gb|EEX30006.1| di-tripeptide transporter [Lactobacillus crispatus MV-3A-US] Length = 497 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 12/179 (6%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + L I L+ + + SD+ L S R+ + I +L + Sbjct: 106 LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 165 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146 ++P F I + +L + F V G K+ S +L Sbjct: 166 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDR 225 Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 + + + +K +++G ++ + M F N +++ + I + + Sbjct: 226 GDLL-NIIKWVVIGFVVIALV---LAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 280 >gi|56708047|ref|YP_169943.1| proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89256569|ref|YP_513931.1| proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. holarctica LVS] gi|110670518|ref|YP_667075.1| proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. tularensis FSC198] gi|115314999|ref|YP_763722.1| POT family proton dependent peptide transporter [Francisella tularensis subsp. holarctica OSU18] gi|156502691|ref|YP_001428755.1| proton-dependent oligopeptide transporter (POT) family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010033|ref|ZP_02274964.1| proton-dependent oligopeptide transport [Francisella tularensis subsp. holarctica FSC200] gi|224457134|ref|ZP_03665607.1| proton-dependent oligopeptide transporter (POT) family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254367887|ref|ZP_04983907.1| proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. holarctica 257] gi|254370533|ref|ZP_04986538.1| proton-dependent oligopeptide transporter family protein [Francisella tularensis subsp. tularensis FSC033] gi|254874849|ref|ZP_05247559.1| proton-dependent oligopeptide transport family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|290953086|ref|ZP_06557707.1| proton-dependent oligopeptide transporter (POT) family protein [Francisella tularensis subsp. holarctica URFT1] gi|295313717|ref|ZP_06804298.1| proton-dependent oligopeptide transporter (POT) family protein [Francisella tularensis subsp. holarctica URFT1] gi|56604539|emb|CAG45586.1| Proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89144400|emb|CAJ79690.1| Proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. holarctica LVS] gi|110320851|emb|CAL08969.1| Proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. tularensis FSC198] gi|115129898|gb|ABI83085.1| POT family proton dependent peptide transporter [Francisella tularensis subsp. holarctica OSU18] gi|134253697|gb|EBA52791.1| proton-dependent oligopeptide transport (POT) family protein [Francisella tularensis subsp. holarctica 257] gi|151568776|gb|EDN34430.1| proton-dependent oligopeptide transporter family protein [Francisella tularensis subsp. tularensis FSC033] gi|156253294|gb|ABU61800.1| proton-dependent oligopeptide transporter (POT) family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254840848|gb|EET19284.1| proton-dependent oligopeptide transport family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159242|gb|ADA78633.1| proton-dependent oligopeptide transport [Francisella tularensis subsp. tularensis NE061598] Length = 513 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|187931711|ref|YP_001891695.1| proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter [Francisella tularensis subsp. mediasiatica FSC147] gi|187712620|gb|ACD30917.1| proton-dependent oligopeptide transporter (POT) family protein, di- or tripeptide:H+ symporter [Francisella tularensis subsp. mediasiatica FSC147] Length = 513 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|254372785|ref|ZP_04988274.1| proton-dependent oligopeptide transporter family protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570512|gb|EDN36166.1| proton-dependent oligopeptide transporter family protein [Francisella novicida GA99-3549] Length = 513 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|170754972|ref|YP_001781045.1| peptide ABC transporter permease [Clostridium botulinum B1 str. Okra] gi|169120184|gb|ACA44020.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum B1 str. Okra] Length = 629 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ ++ + +L K + IK +SI LV+ + Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++F+ I + +I S+ Y M F++ + Sbjct: 159 RTFILIYFIVSISGASIIYRYELMDLFMAES 189 >gi|227878540|ref|ZP_03996473.1| di-tripeptide transporter [Lactobacillus crispatus JV-V01] gi|256843985|ref|ZP_05549472.1| di-tripeptide transporter [Lactobacillus crispatus 125-2-CHN] gi|256849451|ref|ZP_05554883.1| di-tripeptide transporter [Lactobacillus crispatus MV-1A-US] gi|293381799|ref|ZP_06627773.1| amino acid/peptide transporter (Peptide:H+ symporter) [Lactobacillus crispatus 214-1] gi|227861863|gb|EEJ69449.1| di-tripeptide transporter [Lactobacillus crispatus JV-V01] gi|256613890|gb|EEU19092.1| di-tripeptide transporter [Lactobacillus crispatus 125-2-CHN] gi|256713567|gb|EEU28556.1| di-tripeptide transporter [Lactobacillus crispatus MV-1A-US] gi|290921635|gb|EFD98663.1| amino acid/peptide transporter (Peptide:H+ symporter) [Lactobacillus crispatus 214-1] Length = 497 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 12/179 (6%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + L I L+ + + SD+ L S R+ + I +L + Sbjct: 106 LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 165 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146 ++P F I + +L + F V G K+ S +L Sbjct: 166 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDK 225 Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 + + + +K +++G ++ + M F N +++ + I + + Sbjct: 226 GDLL-NIIKWVVIGFVVIALV---LAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 280 >gi|254369446|ref|ZP_04985458.1| proton-dependent oligopeptide transport family protein [Francisella tularensis subsp. holarctica FSC022] gi|157122396|gb|EDO66536.1| proton-dependent oligopeptide transport family protein [Francisella tularensis subsp. holarctica FSC022] Length = 513 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L L+ + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P KR+S G +++ Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|325290917|ref|YP_004267098.1| binding-protein-dependent transport systems inner membrane component [Syntrophobotulus glycolicus DSM 8271] gi|324966318|gb|ADY57097.1| binding-protein-dependent transport systems inner membrane component [Syntrophobotulus glycolicus DSM 8271] Length = 361 Score = 40.6 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 62/180 (34%), Gaps = 10/180 (5%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF---LLTHLSLSAS 92 +F +L L + ++ L++++H++ LL H+ + Sbjct: 9 IFRMMLRLSGIFLVAVLWELLPRIGIVNHTFLPPLSVVLQEVAHLILTQHLLGHVLATLW 68 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 RL++ +L ++ ++ + P F+ + G +S+ + Sbjct: 69 RLMVGIVLAVLLAVPLGAVLGYWLPGAAVALNPLFRIL----GQINPFSLMTVFFLFLGV 124 Query: 153 ---VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 K+++V + L + T + + + + ++ + +LL +L Sbjct: 125 GEKAKLVVVTWVAFWPLIHHTITGIQTVEPDLIKAARSMGMSRGRLFLNVLLPGTVPAIL 184 >gi|153938094|ref|YP_001390754.1| peptide ABC transporter permease [Clostridium botulinum F str. Langeland] gi|152933990|gb|ABS39488.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum F str. Langeland] gi|295318826|gb|ADF99203.1| peptide ABC transporter, Pep4E family, permease protein [Clostridium botulinum F str. 230613] Length = 629 Score = 40.6 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 +S+ S S I+A +++ ++S + + L S K ++I+ ++F Sbjct: 54 VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 + G++ +M + +L K + IK +SI LV+ + Sbjct: 108 ---ETMTMGIIALVMGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180 ++F+ I + +I S+ Y + F++ + Sbjct: 159 RTFILIYFIVSISGASIIYRYELIDLFMAES 189 >gi|332361024|gb|EGJ38828.1| FmtA family protein [Streptococcus sanguinis SK1056] Length = 596 Score = 40.6 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 17/157 (10%) Query: 26 GNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 G+ ++ + ++ ++A ++ ++F + DL L+ Q K I Sbjct: 443 GDNFRVKDSEILADWAMLIAAVVGIVFSIILFLVRGGLDLFRLVFKKGQPKTPKKLRIWT 502 Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSY---------LIQRIPVLNLNHVKPSFKRVSLR 133 LT L+ L GL+ + SY +L + P F + Sbjct: 503 YLTSLAAVGVALNFYGLVAAFLASNRSYPYSIWPYIVFAVLGLILAGCAIYPLFSKARKG 562 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170 G R+ L+ MKS + +V I+ SL + + Sbjct: 563 LGKGRL-----LLTIMKSLSALAIVANILYWSLYQWW 594 >gi|295693743|ref|YP_003602353.1| di-/tripeptide transporter [Lactobacillus crispatus ST1] gi|295031849|emb|CBL51328.1| Di-/tripeptide transporter [Lactobacillus crispatus ST1] Length = 445 Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 9/176 (5%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + L I L+ + + SD+ L S R+ + I +L + Sbjct: 54 LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 113 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146 ++P F I + +L + F V G K+ S +L Sbjct: 114 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDR 173 Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 + + + +K +++G ++ + N ++L + +++L Sbjct: 174 GDLL-NIIKWVVIGFVVIALVLAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 228 >gi|311032940|ref|ZP_07711030.1| carbon starvation protein CstA [Bacillus sp. m3-13] Length = 580 Score = 40.6 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 63/182 (34%), Gaps = 10/182 (5%) Query: 33 EASLFSSILACLIYLLFFFSPG--------IYSVTSDLHVLLASATQRKLEDISHIVFLL 84 + S IL I L + + P +++ L + + K + I + L Sbjct: 64 SVAGASPILGPAIALYWGWGPAFLWVILGTVFAAGVHDFGTLVLSVRNKGQSIGTLTDRL 123 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144 L I +L+ M+ + +++I + + V P F + + I Sbjct: 124 IGKRAKMLFLFIILILVLMVNAVFAWVISNLFIQFPAAVIPIFIEIPIAIWIGYAVYKRK 183 Query: 145 LVNFMKSFVKIILV--GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 + S + + ++ ++T L ++ + +++L+ + I++ Sbjct: 184 AKMLVPSLIALAVMYGSAVLTSKLPFLQIDLVRYFGGADNTVLFGLDGVSMSFFVWIVIL 243 Query: 203 IA 204 + Sbjct: 244 LV 245 >gi|254478088|ref|ZP_05091471.1| integral membrane protein MviN [Carboxydibrachium pacificum DSM 12653] gi|214035950|gb|EEB76641.1| integral membrane protein MviN [Carboxydibrachium pacificum DSM 12653] Length = 524 Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 19/186 (10%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97 S+ L + F Y + L S K I+ + +L ++ L+ + Sbjct: 345 STYLTSIALFYFAIGMTAYGLRDVLSRSFYSMKDTKTPMINGALAVLVNIILNLILVRYL 404 Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157 L + + + + N SLR+ I RI L++F+K+ ++ Sbjct: 405 ELGGLALSTSIAAIFATFLLFN-----------SLRKKIGRINGRYMLISFLKASAGSLI 453 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 + ++ F+ P +Y A + I ++ + ++D Y+ Sbjct: 454 MALVVYFFFN-------RFMLMFPDKKIYEAIALFITIGIGAFVYFLAVILMDKNVFYY- 505 Query: 218 WYSKLK 223 + +K Sbjct: 506 FKKGVK 511 >gi|167949064|ref|ZP_02536138.1| hypothetical protein Epers_22151 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 35 Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 8/17 (47%), Positives = 15/17 (88%) Query: 224 MSKQEIKDEIKQSYGNP 240 M++QE++DE+K++ G P Sbjct: 1 MTRQEVRDEMKETEGRP 17 >gi|300712179|ref|YP_003737993.1| aldo/keto reductase [Halalkalicoccus jeotgali B3] gi|299125862|gb|ADJ16201.1| aldo/keto reductase [Halalkalicoccus jeotgali B3] Length = 274 Score = 40.2 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL-IYKI 349 + +R+ A EH++P+ LAR VP I + AQ+ + + Sbjct: 172 ETLREYADEHDLPLVAYSPLARGEVFDVPELEEIAEKHDASAAQVSLAWL 221 >gi|328856809|gb|EGG05929.1| hypothetical protein MELLADRAFT_87612 [Melampsora larici-populina 98AG31] Length = 569 Score = 40.2 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 72/202 (35%), Gaps = 10/202 (4%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT---HLSLS 90 + SIL+ + FF I S+ + + ++ ++ F+ + ++ Sbjct: 286 LLVLVSILSAARNAMSFFMLLIVSLGYSIVKDSLGSMMIRIRLLAAAHFVFGVVYAIGMA 345 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 GL +F M ++ + + + + + + E K+ Y V + Sbjct: 346 TFPFESAGLWIFFMVFPLAFTLTGFMMWIMAALS---QTIQDLESRKQTYKKQMFVRLHR 402 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + +V + + + ++ L P + F + ++ ++ ++ L Sbjct: 403 ILIAAAVVIILFFLVSSISFSNRLQE-DYAPETWRTRWFILDGWLALLYIVCFISVAFLW 461 Query: 211 IGWSYHQWYSKLKMSKQEIKDE 232 + +++ L MS + +DE Sbjct: 462 RPTARNRY---LAMSDELAQDE 480 >gi|312139110|ref|YP_004006446.1| nad(p) transhydrogenase beta subunit pntb [Rhodococcus equi 103S] gi|311888449|emb|CBH47761.1| NAD(P) transhydrogenase beta subunit PntB [Rhodococcus equi 103S] Length = 476 Score = 40.2 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 60/186 (32%), Gaps = 17/186 (9%) Query: 32 REASLFSSILACLIYLLFFFSPGI----YSVTSDLHVLLASATQRKLEDISHIVFL-LTH 86 R+ + I+ L+ + P + L L + I+ FL Sbjct: 52 RDTDHWGLIIGGLLVGIVLGVPPALRTKMTAMPQLVALFNGVGGGTVALIAWAEFLNSDG 111 Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + +P ++ + I + ++ ++ F + K++ + Sbjct: 112 FTTVKTVPSVPFIVGSLFAAIIGSVSFWGSLVAFAKLQELFNK----NFEKKVVASAKAF 167 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 + ++ VG I I + + + +P S L+ V ++ + + + + Sbjct: 168 QLANMILAVVSVGIAIYIGIQAD-------PANDPTSALWIVGLLVAAGVMGLFVVL-PI 219 Query: 207 TVLDIG 212 D+ Sbjct: 220 GGADMP 225 >gi|219121585|ref|XP_002181144.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407130|gb|EEC47067.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 480 Score = 40.2 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 24/205 (11%) Query: 11 TEAPSSKKIEDALNEGNAPI-SREASLFSSILACLIYLLFFFSPGI---------YSVTS 60 TE + ++ + N P ++ + +A LI +L S G+ Sbjct: 44 TEEATPERRQ------NPPKQYQDVAWALLFVAHLIAMLVVISMGLTGSNQNAYGGGYGG 97 Query: 61 DLHVLLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119 + V++ + + + ++ H + +I +L + GI ++I I Sbjct: 98 TIFVVVGVTGLSSLIFSSLALSQMMKHTEILVQVALIFSVLCSLAIGIVGFMIGSIMTGV 157 Query: 120 LNHVKPSFKRVSLREGIKRI-YSINNLVNFMKSF-----VKIILVGTIITISLTENYFTM 173 + + +F + RI ++ NLV + + + I G + +F Sbjct: 158 IGLIAFAFGCCYAKIVWPRIPFAATNLVTALSAVRANLGLAIAAYGMTALAFVWS-FFWF 216 Query: 174 LDFISANPHSILYHAFFTVRKVLIM 198 A S L F + Sbjct: 217 TGLADAFAGSNLGIIFLLFLSFYWV 241 >gi|325673589|ref|ZP_08153280.1| NAD(P) transhydrogenase beta subunit [Rhodococcus equi ATCC 33707] gi|325555610|gb|EGD25281.1| NAD(P) transhydrogenase beta subunit [Rhodococcus equi ATCC 33707] Length = 476 Score = 39.8 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 60/186 (32%), Gaps = 17/186 (9%) Query: 32 REASLFSSILACLIYLLFFFSPGI----YSVTSDLHVLLASATQRKLEDISHIVFL-LTH 86 R+ + I+ L+ + P + L L + I+ FL Sbjct: 52 RDTDHWGLIIGGLLVGIVLGVPPALRTKMTAMPQLVALFNGVGGGTVALIAWAEFLNSDG 111 Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + +P ++ + I + ++ ++ F + K++ + Sbjct: 112 FTTVETVPSVPFIVGSLFAAIIGSVSFWGSLVAFAKLQELFNK----NFEKKVVASAKAF 167 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 + ++ VG I I + + + +P S L+ V ++ + + + + Sbjct: 168 QLANMILAVVSVGIAIYIGIQAD-------PANDPTSALWIVGLLVAAGVMGLFVVL-PI 219 Query: 207 TVLDIG 212 D+ Sbjct: 220 GGADMP 225 >gi|222153868|ref|YP_002563045.1| membrane protein [Streptococcus uberis 0140J] gi|222114681|emb|CAR43759.1| putative membrane protein [Streptococcus uberis 0140J] Length = 520 Score = 39.8 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 40/234 (17%) Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL------------LASATQR 72 +G P S S + +I + + V ++ + Q+ Sbjct: 77 KGQIPYSEVFSTGGMLYFAMIAFSYLLKSTWWLVLFEMIAFYVSGIYLYKLINFFTGIQK 136 Query: 73 KLEDISHIVFLLTHL----SLSASRLVIPGLLL-----------------FMMFGIGSYL 111 S + + L + + +P +L+ F++FG+ + Sbjct: 137 VAWAFSFLFYFLMGTLGFGGIYPIQFALPFVLISLWFLTKYFAALIKDEAFILFGLAGAM 196 Query: 112 IQRIPVLNLNHVKPSF--KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169 +L + V + K+ + + S + ++LV + Sbjct: 197 AM---LLEPRALIFWLVSSIVIIVYNSKQHHVARGFYQLLASILGMLLVFYTAGYFILNL 253 Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMI--LLFIATLTVLDIGWSYHQWYSK 221 A + + T+ +L ++ ++F L + +Y + + + Sbjct: 254 QILGPYLAQAVRYQFTFFKVGTLSVLLSVLVQVIFAFGLGISYGVIAYLKHFKE 307 >gi|297691190|ref|XP_002822977.1| PREDICTED: taste receptor type 2 member 49-like [Pongo abelii] Length = 309 Score = 39.8 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 32/239 (13%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 F I+ ++ L+ F + L +A ++K+ I+ L + Sbjct: 1 MMSFLHIVFSILVLVAFILGNFANGFIALTNFIAWVKRQKISSADQIIAALAVSRVGLLW 60 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF----- 148 +++ ++ S L I V N V F I+ + +VNF Sbjct: 61 VILLHWYSTVLNPTSSSLKVTIFVSNAWAVTNHFSI--WLATSLSIFYLRKIVNFSRLIF 118 Query: 149 ------MKSFVKIILVGTIITIS-----------LTENYFTMLDFISANPHSILYHAFFT 191 KS V +I++G + + + + + +Y + T Sbjct: 119 HHLKRKAKSVVLVIVLGALFFLVCHLVMENTYINVWTKEYEGNVTWKIKLRNAMYLSNLT 178 Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 V + +I + ++VL + +S + K+++ + +P K K++ Sbjct: 179 VATLANLIPFTLTLISVLLLIYSLCKHLKKMQL--------HGKGSQDPSTKIHIKALQ 229 >gi|149176234|ref|ZP_01854849.1| hypothetical protein PM8797T_23094 [Planctomyces maris DSM 8797] gi|148844836|gb|EDL59184.1| hypothetical protein PM8797T_23094 [Planctomyces maris DSM 8797] Length = 512 Score = 39.8 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 7/188 (3%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 + CL+ F G++ + + +A R+L L + V Sbjct: 13 FIQCLLEAAPFILAGLF-IAAIFQRFFGAAETRRLFGEGTRAALFRAWVIGMLLPVCSLG 71 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 ++ + + + ++ P F +SL G+ + L + S + + LVG Sbjct: 72 VIPVARQLKKAGLAGGTIIAFAMSAPLFNPLSLLYGLTLSEPVTILAFALFSLLIVTLVG 131 Query: 160 TII--TISLTENYFTMLDFISANPHSILYHAFFTVRKV----LIMILLFIATLTVLDIGW 213 TI Y T I +L V++ LI I++ +A + +L + Sbjct: 132 TIWDRLFPEKPEYPTDDQVIPYGMKRMLSVGVSAVKEASGTSLIYIMIGLAGVALLGVAL 191 Query: 214 SYHQWYSK 221 Sbjct: 192 PQSSLQRS 199 >gi|290989086|ref|XP_002677176.1| predicted protein [Naegleria gruberi] gi|284090782|gb|EFC44432.1| predicted protein [Naegleria gruberi] Length = 2103 Score = 39.8 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 84/218 (38%), Gaps = 29/218 (13%) Query: 24 NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83 + ISR ++ + ++A ++ L + I + + L +T D++ Sbjct: 1628 RKSQPLISRLSTPYLGMIALMVESLLIY---IIQRSVLVDQLFKDSTNWSSGDLA----- 1679 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI----------PVLNLNHVKPSFKRVSLR 133 + + +V+ + + I +YLIQ + + L + + + SL Sbjct: 1680 ----ANWIANIVMIFVNTLNLTAILAYLIQVLRFQLMKYLYNILHQLRKSQSNISQSSLL 1735 Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 + +KR ++ +VN S + ++ ++ +L + + Y + Sbjct: 1736 KNLKR-FTSKKVVN---SILLTFVILNLLYWTLWVILRRCDVI---SLTAYTYIISISYI 1788 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 ++ + L I+ V+D +S + +S K S +E K Sbjct: 1789 IIIFALSLVISGTAVVDFIYSMIKQHSSNKKSIEETKK 1826 >gi|146161256|ref|XP_976982.2| hypothetical protein TTHERM_00031840 [Tetrahymena thermophila] gi|146146788|gb|EAR86574.2| hypothetical protein TTHERM_00031840 [Tetrahymena thermophila SB210] Length = 1591 Score = 39.8 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 22/183 (12%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 ++ CLI+L FFF+P I L+ +L+ ++++I +IV + ++ + Sbjct: 1126 MVTCLIFLYFFFAPSI------LNRILSYMACAQIDEIQYIVGMSNLTCFNSEHKLYLFT 1179 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS--INN--LVNFMKSFVKI 155 LF + + + I L + ++ ++ IY + F+K F+K Sbjct: 1180 FLFPVCLLWALFIPIYFFFKLKSNREYLDQIRMKFQFGFIYQEYKRSCYYWEFVKIFLKF 1239 Query: 156 ILVGTIITIS------------LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 ++ T++ L Y ++ I +L A LI I Sbjct: 1240 TIISTLMIFYEQQTIKIILVATLVLAYNQLIYIIQPFVSKVLNQAEKYSTITLIFTGFLI 1299 Query: 204 ATL 206 + Sbjct: 1300 LPI 1302 >gi|82751748|ref|YP_417489.1| membrane-embedded lytic regulatory protein [Staphylococcus aureus RF122] gi|82657279|emb|CAI81720.1| membrane-embedded lytic regulatory protein [Staphylococcus aureus RF122] Length = 351 Score = 39.8 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 86/211 (40%), Gaps = 14/211 (6%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +G S L + +I +L + +Y + S + ++ ++ Q D +H+ Sbjct: 109 AFKKGIYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL- 164 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 + ++ + I ++ ++ I ++L+ IP+ N ++ + + Sbjct: 165 -----IGIAITTQSIIIFVVLLIKAIITWLL-VIPIFNFMTSFVESTNDKVKTHLANGF- 217 Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199 + N K+F K + ++ + + + IS N S+ + +V ++ I Sbjct: 218 -KAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTI 276 Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 +LFI ++ +G + K++K ++K Sbjct: 277 ILFIVIHAIILMGIVQYYLKRGQKITKDKVK 307 >gi|16081193|ref|NP_393486.1| V-type ATP synthase subunit I [Thermoplasma acidophilum DSM 1728] gi|12585459|sp|Q9HM61|VATI_THEAC RecName: Full=V-type ATP synthase subunit I; AltName: Full=V-ATPase subunit I gi|10639155|emb|CAC11157.1| A1AO H+ ATPase, subunit I related protein [Thermoplasma acidophilum] Length = 637 Score = 39.8 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 6/131 (4%) Query: 91 ASRLVIPGLLLFMMFGIG---SYLIQRIPVLNLNHVKPSFKRVSLR--EGIKRIYSINNL 145 LV P M+ G + L+ + +++ P+ + + I S +L Sbjct: 332 IFALVFPVFFGLMVGDWGYGLAILLISLFIIHRVDHPPAKSHIPRVISRFVLMIMSPQSL 391 Query: 146 VNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 K+ + +V I + E + F +L F + +++L + + +++F Sbjct: 392 KTLAKALIPSSIVAIIAGLLFNEFFGFAILPFTVFHVYAVLPKLMLIAGYIGLGMVVFGF 451 Query: 205 TLTVLDIGWSY 215 L ++ W Sbjct: 452 ILGFIEDLWMK 462 >gi|315444032|ref|YP_004076911.1| apolipoprotein N-acyltransferase [Mycobacterium sp. Spyr1] gi|315262335|gb|ADT99076.1| apolipoprotein N-acyltransferase [Mycobacterium sp. Spyr1] Length = 560 Score = 39.8 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 29/221 (13%) Query: 1 MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60 M E A + E P+ A G A + R L ++I+A L + F G + Sbjct: 1 MGETAADADAPERPT-----RARRFGQAVVDRLPRLTAAIVAGLALCVSFPPFGWWYTAI 55 Query: 61 DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--------LLFMMFGIGSYLI 112 +L R+ ++ L+ ++P + L + S+ Sbjct: 56 LAFAVLGWVLTRERTTVAGGAGYGLLFGLAFYVPLLPWISGLVGAVPWLALSVVEASFCA 115 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYF 171 + + P + ++S ++KS V ++ S +E+ Sbjct: 116 LFGMLAVVVRRLPGW-----PLWFAGLWSAQ---EWLKSTVPFGGFPWGVVGFSQSESPL 167 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 L ++ P + VL+ L L + D Sbjct: 168 LPLAYVGGAP-------LVSFALVLLAFSLGALVLGIADWW 201 >gi|55976673|sp|Q645V6|T2R20_PONPY RecName: Full=Taste receptor type 2 member 20; AltName: Full=Taste receptor type 2 member 49; Short=T2R49 gi|51989237|gb|AAU21163.1| taste receptor T2R49 [Pongo pygmaeus] Length = 309 Score = 39.8 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 32/239 (13%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 F I+ ++ L+ F + L +A ++K+ I+ L + Sbjct: 1 MMSFLHIVFSILVLVAFILGNFANGFIALTNFIAWVKRQKISSADQIIAALAVSRVGLLW 60 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF----- 148 +++ ++ S L I V N V F I+ + +VNF Sbjct: 61 VILLHWYSTVLNPTSSSLKVTIFVSNAWAVTNHFSI--WLATSLSIFYLRKIVNFSRLIF 118 Query: 149 ------MKSFVKIILVGTIITIS-----------LTENYFTMLDFISANPHSILYHAFFT 191 KS V +I++G + + + + + +Y + T Sbjct: 119 HHLKRKAKSVVLVIVLGALFFLVCHLVMENTYINVWTKEYEGNVTWKIKLRNAMYLSNLT 178 Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 V + +I + ++VL + +S + K+++ + +P K K++ Sbjct: 179 VATLANLIPFTLTLISVLLLIYSLCKHLKKMQL--------HGKGSQDPSTKIHIKALQ 229 >gi|28209877|ref|NP_780821.1| hypothetical protein CTC00106 [Clostridium tetani E88] gi|28202312|gb|AAO34758.1| conserved membrane protein [Clostridium tetani E88] Length = 351 Score = 39.8 bits (92), Expect = 0.73, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 ++ + +FF+ + S + L ++ + K+ +I + L L A Sbjct: 163 IPYIFMLIFFTLISTYFFTKDLSSAKNKLFSIIPNDKSDKISNIFNESKKL--LVNYALS 220 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 +I L+ F+ IG +++ + L+ + F + GI +Y LVN Sbjct: 221 YLIIILITFVETLIGFLVLRVNYAIILSIIAAIFDIL-PILGIGSVYIPLALVNLFIKKD 279 Query: 154 KIILVGTIITISLTENYFTML------DFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 +G +I + +L + +P SIL F ++ I + F L Sbjct: 280 YFTAIGVLIWYLVVTIIRQILEPKIVSSSLGMHPISILAAIFIGLKAAGITGMFFCIFLV 339 Query: 208 VLDIGW 213 V + Sbjct: 340 VFYKVF 345 >gi|284034239|ref|YP_003384170.1| major facilitator superfamily protein [Kribbella flavida DSM 17836] gi|283813532|gb|ADB35371.1| major facilitator superfamily MFS_1 [Kribbella flavida DSM 17836] Length = 410 Score = 39.8 bits (92), Expect = 0.73, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 15/200 (7%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED------------ISHIVF 82 +++ + L + G + L + A+A+ + Sbjct: 90 GSLLMLVSMVFALQAWLDWGQLWLLYVLTAIGAAASAIDTPARRTFIPRVLPPKLLPAAA 149 Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR--EGIKRIY 140 L LS A+ + P L ++ +G + L V S +R+ EG + Sbjct: 150 ALHQLSFQAAIIAAPVLAGVLISAVGLEAAYGLDALTFVAVLVSVRRLPPMPPEGGGATF 209 Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTML-DFISANPHSILYHAFFTVRKVLIMI 199 + ++V ++ V+ L+G I I L M A + TV + I Sbjct: 210 GVRSVVEGLRYAVRHPLIGMIFLIDLNATVLAMPTALFPALADTRFGGGAQTVGYLYAAI 269 Query: 200 LLFIATLTVLDIGWSYHQWY 219 + +L + + Sbjct: 270 GVGGIVAGILSGPLGHLRHQ 289 >gi|312383457|gb|EFR28541.1| hypothetical protein AND_03421 [Anopheles darlingi] Length = 2400 Score = 39.4 bits (91), Expect = 0.78, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 7/84 (8%) Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA--- 204 +K+ + + L+G + + + ++ + D S + +V ++LI + + Sbjct: 924 LIKTLL-VTLMGLVYCLFIELSHANIFDCYDQRVESAIPLHTISVARILIFMFAILVHGR 982 Query: 205 ---TLTVLDIGWSYHQWYSKLKMS 225 LD W K +MS Sbjct: 983 QVEWTARLDFLWQLQASQEKKEMS 1006 >gi|9635620|ref|NP_061524.1| Orf28 [Pseudomonas phage D3] gi|8895130|gb|AAF80788.1| putative O-antigen acetylase [Pseudomonas phage D3] Length = 687 Score = 39.4 bits (91), Expect = 0.80, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 14/195 (7%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+FS + + L + + L + I F ++ ++ Sbjct: 182 ISVFSVLCVFAVSLYGCIALSGDGAGKNYSFFLMPLRAWEFIAGGAIAF-----AVPFAQ 236 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY-----SINNLVNF 148 + L + L I N P+ K + G I + LV+ Sbjct: 237 RLGRLALEIIAIAGVVMLFYAIFFFNGKSPYPAGKALVPVIGAALIILCGVSNHKILVSR 296 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 + SF +++G + ++ ++ H + ++ I +A +T Sbjct: 297 ILSFRVFVMIGLVSYAWYLWHWP----LLTFGRIYSFGHKSIALDLSMVAIAFVLACITY 352 Query: 209 LDIGWSYHQWYSKLK 223 + + W LK Sbjct: 353 VYVDKKVLNWRKSLK 367 >gi|323180301|gb|EFZ65853.1| surface presentation of antigens protein spaS domain protein [Escherichia coli 1180] Length = 93 Score = 39.4 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334 +A +RK A E IPI + LAR + + Sbjct: 1 MALGVRKYAKEIGIPIITDKKLARKNYATHRRYDYV 36 >gi|193664492|ref|XP_001942608.1| PREDICTED: proton-coupled folate transporter-like [Acyrthosiphon pisum] Length = 563 Score = 39.4 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 26/226 (11%) Query: 24 NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83 EG +R + + ++ ++ + + ++ Sbjct: 296 KEGQ--YNRRLRIIALMVVVIVVMGPLHGEMSVMYLFTRVRFNWDEVNYSMFSTYSMITN 353 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSF--KRVSLREGIKRI 139 L S + + G+ S + I V F + Sbjct: 354 LVGTMFSVGVFSHMLQIDDALIGVISCMSKILAGFVYAFATTDFVFYLAPLVDIVNGTSF 413 Query: 140 YSINNLV-------NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA-FFT 191 ++ +++ K + + + ++ I +S +Y A T Sbjct: 414 IAMRSIISKLVPPDELGK----VNSLFGVC--------EALVPLIYGPMYSAVYKATLKT 461 Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237 V ++ + L W Y++ + + + EI+DE K+S Sbjct: 462 VPGAFFLLGGALTAPAALIFLWMYNEHKKERREKEAEIRDEEKKSE 507 >gi|291239388|ref|XP_002739605.1| PREDICTED: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A, putative-like [Saccoglossus kowalevskii] Length = 581 Score = 39.4 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 11/196 (5%) Query: 45 IYLLFFFSPGI----YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100 ++L FFS Y +T +L L + I ++ L+ + + Sbjct: 127 VFLAPFFSSLTTLVTYHLTKELKALGVFGLCQIHAFIDYVRSRLSKEYFEILFRTLVLVA 186 Query: 101 LFMMFGIGSYLIQRIPVLNLNH-----VKPSFKRVS-LREGIKRIYSINNLVNFMKSFVK 154 ++ +G+ L + + PS+ + + + +F Sbjct: 187 ALIVTAVGAVLTATGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSFYFDLQM 246 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214 ++ + + FI + LY + VR +++++ + L + + Sbjct: 247 LVFMFPVGMYYCFSKLTDANIFIIMYGITSLYFSGVMVR-LMLVLAPVMCILAGIGVSSV 305 Query: 215 YHQWYSKLKMSKQEIK 230 + L MS++E K Sbjct: 306 LSNYMKNLDMSRREKK 321 >gi|327288432|ref|XP_003228930.1| PREDICTED: transient receptor potential cation channel subfamily M member 7-like [Anolis carolinensis] Length = 1967 Score = 39.4 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 22/99 (22%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K+I RI ++ + +I P L Y+Q PV+V +G Sbjct: 343 EVKLRRELEKTINLQRIHARIGQGVPVVALIFEGGPNVVLTVLEYLQESPPVPVVVCEGT 402 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A + ++KQ IP Sbjct: 403 G-RAADILAY-----------------VYKQTEEGGNIP 423 >gi|300853242|ref|YP_003778226.1| hypothetical protein CLJU_c00140 [Clostridium ljungdahlii DSM 13528] gi|300433357|gb|ADK13124.1| conserved membrane protein [Clostridium ljungdahlii DSM 13528] Length = 905 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 1/179 (0%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE-DISHIVFLLTHLSLS 90 R+ F ++ + F S Y + + + + L DIS +F L + Sbjct: 94 RKIVFFIDLIVSFLASYVFASAYWYRILQFTNSVPFNKKDPILNLDISFYIFKLPLIQSI 153 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 S LV +LL ++ +++ + K +F ++++ + ++ L Sbjct: 154 YSALVSLFILLGLITLFTYFILSMKDKFVSRNFKRNFGKINILDSGLTRFAGKQLAVLAA 213 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 + I +G I+ + F ++ + + F+ + V I + ++++ Sbjct: 214 LIILCISIGYILKCINLVYSQNGVAFGASYTDAHVSLLFYKIIAVASFIAAIVIFISII 272 >gi|208779217|ref|ZP_03246563.1| proton-dependent oligopeptide transport [Francisella novicida FTG] gi|208745017|gb|EDZ91315.1| proton-dependent oligopeptide transport [Francisella novicida FTG] Length = 513 Score = 39.4 bits (91), Expect = 0.96, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 29/206 (14%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E ++ LA + F S+ S L + + ++ ++ Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPAQDGAMTLYYMAINIGSF 166 Query: 91 ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ P + ++ + S + + +++ P +R+S G +++ Sbjct: 167 LSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTVFYPKIQRISTEAGKQKM-------- 218 Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197 S+ K ++L+G I I + N ++ I A ++ Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275 Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222 MI+ I + + Y Q + L Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301 >gi|123503305|ref|XP_001328480.1| Clan CA, family C2, calpain-like cysteine peptidase [Trichomonas vaginalis G3] gi|121911424|gb|EAY16257.1| Clan CA, family C2, calpain-like cysteine peptidase [Trichomonas vaginalis G3] Length = 1437 Score = 39.0 bits (90), Expect = 0.98, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 64/190 (33%), Gaps = 13/190 (6%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 + S++ I+ + + + + + L + ++ L L L Sbjct: 412 VIVSVIILTIFTSLVLAMWLTDYQYGMPTFIFNIFPIFLFFLIAVIMLSFMLGLHMDAY- 470 Query: 96 IPGLLLFMMFGIGSYLIQRIP--VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 L +++ +IQ + L +++ F S G +Y++ V + + + Sbjct: 471 --DLRVYVSVAWSFLMIQILLKRTFKLQYIEYIFTDFSAAFGPYWVYTLYTGVVLLLTIL 528 Query: 154 KIILVGT--------IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 + + I + F++ + + ++ + F T+ L + + + Sbjct: 529 YFVFIFCFGNTKFISIAVYLIFIFLFSIYNLATQEDNNYYFKTFITLIVFLFVSCIALVV 588 Query: 206 LTVLDIGWSY 215 + + W Y Sbjct: 589 IAFVYFNWKY 598 >gi|261380497|ref|ZP_05985070.1| rod shape-determining protein RodA [Neisseria subflava NJ9703] gi|284796750|gb|EFC52097.1| rod shape-determining protein RodA [Neisseria subflava NJ9703] Length = 383 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 10/189 (5%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 LF ++LA I LF +YS L + T + + + + +A+++ Sbjct: 22 LFFAMLAIYIMSLFL----LYSADGQEFGQLENKTIHTVLGFALLWIIAVFKPHTAAKVA 77 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF------M 149 +P ++ ++ IG + + + F R+ E +K + F + Sbjct: 78 LPVYIVGVLLLIGVEVAGVTVNGSTRWLSLGFTRIQPSEIMKIGIPMTVAWYFQRYEGRL 137 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 K I+ + I+ L + S ++ FF + IA + L Sbjct: 138 KWIHYIVALVLILVPVALILKQPDLGTAALIMASGIFVIFFAGLPWKAIFSAIIAFVAAL 197 Query: 210 DIGWSYHQW 218 + W+Y Sbjct: 198 PLLWNYGMH 206 >gi|261364018|ref|ZP_05976901.1| rod shape-determining protein RodA [Neisseria mucosa ATCC 25996] gi|288568046|gb|EFC89606.1| rod shape-determining protein RodA [Neisseria mucosa ATCC 25996] Length = 387 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 27/177 (15%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 LF +LA I LF +YS L T + + + F+ + A+++ Sbjct: 23 LFFPMLAIYIMSLFL----LYSADGQDFGQLEHKTMHTVTGFALLWFVASFKPRDAAKVA 78 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +P L+ ++ + + + ++ F R+ E +KI Sbjct: 79 LPMYLIGVLLLVAVEVAGVTVNGSTRWLELGFTRIQPSE-----------------IMKI 121 Query: 156 ILVGTIITIS------LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 +L T+ L ++ + + P +++ VLIM Sbjct: 122 VLPMTVAWYFQRHEGRLKWFHYIIAMLLILIPVALILKQPDLGTAVLIMASGIFIVF 178 >gi|221133802|ref|ZP_03560107.1| cell division protein FtsW [Glaciecola sp. HTCC2999] Length = 428 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 62/202 (30%), Gaps = 15/202 (7%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS--- 90 +L + ++ GI + ++ L I + L+ +S+ Sbjct: 35 VALALVSIGIIMVASASMPEGIAKYNNQYFFIIRHVIFSCLSFIVALFVLMIPISMWQKY 94 Query: 91 ---ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINN-- 144 L L+ ++ G QR L +++ ++ + + Sbjct: 95 NPYLLFLAFGLLVAVLLVGRSVNGAQRWLTLGPINIQAAEPTKLFFFCFLAGYLERRHTE 154 Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 + +K F+K +LV ++ + L D + I + + + + Sbjct: 155 VTENIKGFIKPLLVFFVLGLCLWSQ----PDLGTTIVMFITTIGLLFLAGAKLWQFIGLL 210 Query: 205 TLTVLDIGWSYHQWYSKLKMSK 226 V + + + + +M + Sbjct: 211 LTGV--VLFITMIFLEEYRMRR 230 >gi|18976843|ref|NP_578200.1| hypothetical protein PF0471 [Pyrococcus furiosus DSM 3638] gi|18892446|gb|AAL80595.1| hypothetical protein PF0471 [Pyrococcus furiosus DSM 3638] Length = 397 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 78/211 (36%), Gaps = 20/211 (9%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 +L + L +++ G S + +S E + L L+A ++ + Sbjct: 87 LLGFAVGSLLYYTGGWASGDVLILAAFSSLLPYAPESAKYKAPYAVVLPLNALTILFNSI 146 Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159 LL I L+ +K F +GI+ ++ ++ + F S +++ Sbjct: 147 LLIFPLIFVYAFAGLIAKKKLSLLKELF-----VKGIRNVFEVSLWIMF--SVTLFVVIS 199 Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG------- 212 + ISL +L F+ S + + + ++ + ++ + L Sbjct: 200 INLGISLHPLLRWILTFLLIAFLSKIRVIGDILGVLSLVYVTYLVGFSSLYFFLRLVIIL 259 Query: 213 WSYHQWYSKLKMSKQEI------KDEIKQSY 237 +++ S +KM ++E+ +E+K+ Sbjct: 260 YAFKLLLSSVKMLRKEVLTKVKRVEELKEGE 290 >gi|269114794|ref|YP_003302557.1| ATP synthase subunit A [Mycoplasma hominis] gi|268322419|emb|CAX37154.1| ATP synthase A chain [Mycoplasma hominis ATCC 23114] Length = 284 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 10/164 (6%) Query: 77 ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 + + L LSL + GL + S+L I K FK ++ E Sbjct: 93 LFAFLILGNMLSLVGLAPIGTGLSAIFAATVISWLGTHIIGFIYKKFKYLFKILNPLEAS 152 Query: 137 KRIYSINNL-VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195 + +L + + +++ ++++ L + ++ +P + L + Sbjct: 153 SNFSPLISLTFRMYGNILGGVVLVALVSLFLNNIWTKIIGANLESPSAELNPIGLLILPA 212 Query: 196 LIMIL----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235 + FI + + SY ++ ++IK++ K Sbjct: 213 FNLYFDIFDSFIQAFVFMILTISYWMQSAE-----EDIKEKHKD 251 >gi|313678811|ref|YP_004056551.1| membrane protein [Mycoplasma bovis PG45] gi|312950227|gb|ADR24822.1| putative membrane protein [Mycoplasma bovis PG45] Length = 352 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Query: 150 KSFVKI-----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 K+F KI + I+ +++ + ++ N I + + + ++++ IL I Sbjct: 108 KNFAKIYTWPLTIYFIILFVNIWNSVSAIIQGRDINASGIKDFSTYILVRMILTILFTII 167 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250 + + + ++ Q+ ++ KQ NP ++ ++I Sbjct: 168 LAVAYFVFVRKYMFIKAAYITVQKYEEAQKQLEDNPELRELVQNIQ 213 >gi|260555178|ref|ZP_05827399.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] gi|260411720|gb|EEX05017.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] Length = 303 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + SL I L + F ++ + +L + L ++ + L + Sbjct: 2 QSVSLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 S ++ P LL+ + +GS+ F + E +K S+ +N +K+ Sbjct: 62 STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110 Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 K L +G I+ I LT+ + + + + AF + + + I Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170 Query: 204 ATLTVL 209 L Sbjct: 171 VPLAAF 176 >gi|295106175|emb|CBL03718.1| sodium/proton antiporter, CPA1 family (TC 2.A.36) [Gordonibacter pamelaeae 7-10-1-b] Length = 657 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 60/204 (29%), Gaps = 16/204 (7%) Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 I+ + S++ F F GI + ++ + + + + F + Sbjct: 155 QFAIAAAVTGTFSLVGATANFFFAFLGGILVGVALGYLGNFIVRRVRSWGLENTTFHVLF 214 Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + L I + V++ + PS R+++ L Sbjct: 215 EVFVPFIVYLVANALGTSGIIAVVAAGILNVVSPRTIGPSVSRMNIVS----TSVWRVLA 270 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 + V +L+GT + + ++ + +L + L +A Sbjct: 271 FALNGIV-FVLLGT-----------QLPRAMQRTWENVTIDNGVLIGYILGITALMLAVR 318 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIK 230 V +M+ E++ Sbjct: 319 FVWVFAMERLHRQRTGRMTLDELR 342 >gi|304439090|ref|ZP_07399009.1| AGCS family alanine/glycine:sodium (Na+) symporter [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372449|gb|EFM26036.1| AGCS family alanine/glycine:sodium (Na+) symporter [Peptoniphilus duerdenii ATCC BAA-1640] Length = 455 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 39/120 (32%) Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163 + I I VL +N + + +G+K I + + + + Sbjct: 303 LVAIVGVFIDTFVVLTINALVIIATGANQIDGLKGIKVTQKAFELGIGHIGVAFIAVALF 362 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + AN + ++L ++ +++ T+ +D+ W ++ + Sbjct: 363 FFAFSTIIGWYFYGEANVRYLFGQKGIGAYRILALVFIYLGTMFEVDLVWELADMFNAMM 422 >gi|310799811|gb|EFQ34704.1| ion transporter [Glomerella graminicola M1.001] Length = 690 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 23/176 (13%) Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL----- 99 I L + + +Y S+ + ++ ++ + ++ + R++ Sbjct: 318 IVLYIWLAAFLYDELSEWADAGTIFYATDVWNLFDMIMIGIGIAFAVLRVIGIANNDRHI 377 Query: 100 --LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157 F +F + + L V +L + P + + L K FVK ++ Sbjct: 378 TNTAFNVFALEA-LFMVPRVFSLLSLSPYWGTLIPC-----------LKEMGKDFVKFMV 425 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 + +I + + T I + ++ + + + I + +D + Sbjct: 426 LVVVIYLG----FLTTFSLIGQDAYNFSHMTMILTKIFFGSAYVGIEIMDDIDKVF 477 >gi|320106650|ref|YP_004182240.1| protein-disulfide reductase [Terriglobus saanensis SP1PR4] gi|319925171|gb|ADV82246.1| Protein-disulfide reductase [Terriglobus saanensis SP1PR4] Length = 708 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 58/207 (28%), Gaps = 33/207 (15%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 F SILA ++ G++ + L Q+ E + F ++ A+ Sbjct: 394 PGFVSILAIFLFFFSLSLAGMFDLGLSLTSAGGGLAQK--EGYAGSFFTGVLATVVATPC 451 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHV-----------KPSFKRVSLREGIKRIYSIN 143 P + + F + + + +P + ++ R G Sbjct: 452 TAPLMGAAIGFALTQPTWITFAIFTSLALGLASPYLILSARPEWTKILPRPG-------- 503 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL--- 200 + +K + L GT+I L+ Y + + V + +L Sbjct: 504 AWMETLKQLTSVPLFGTVIW--LSWLYAKLFPSALGIDNLAWLLVGLLVVAIAGWVLYRW 561 Query: 201 -------LFIATLTVLDIGWSYHQWYS 220 L A + V + Sbjct: 562 PAGWKSTLVAALIAVFAASVPFLMREK 588 >gi|293376870|ref|ZP_06623088.1| phosphotransferase system, EIIC [Turicibacter sanguinis PC909] gi|325840116|ref|ZP_08166943.1| PTS system fructose-specific EIIABC component [Turicibacter sp. HGF1] gi|292644480|gb|EFF62572.1| phosphotransferase system, EIIC [Turicibacter sanguinis PC909] gi|325490408|gb|EGC92730.1| PTS system fructose-specific EIIABC component [Turicibacter sp. HGF1] Length = 460 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%) Query: 40 ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 ++A + + F GI+S + +L I + S+S Sbjct: 143 VVAGGVLIAISFLWGIHSADPTHETYNQFAAMLKQIGGVAFGFIVPVFTAYIASSISGRP 202 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 +I G + M+ V + L +G+ R + +KS Sbjct: 203 GLIAGFVGGMIANDTGAGFIGGIVAGFFAGYLVLGLIHLLKGLPRQF------EGLKSIF 256 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + ++G ++T L + I+ ++++ I++ + I + D Sbjct: 257 ILPIIGVLLTGMLMLFLGEPVAAIN---NAVMSWLADLQDSNAILLGIVIGCMCAFDF 311 >gi|29028605|ref|NP_803295.1| tape measure protein [Staphylococcus phage 11] gi|18920529|gb|AAL82270.1| tape measure protein [Staphylococcus phage 11] Length = 910 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 288 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 347 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 348 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 402 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 403 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 455 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 456 IVIGVIAALIAIFVLLWNKNEGFRN 480 >gi|78356288|ref|YP_387737.1| hypothetical protein Dde_1241 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218693|gb|ABB38042.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 675 Score = 38.6 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 69/195 (35%), Gaps = 15/195 (7%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 ++E +L SI+ +L + YS TS + + T+ + + F ++ Sbjct: 169 QAKEITLALSIMCFGSFLYSIY----YSYTSPVAAYFNTFTRIWELLLGGLAFFISRRFF 224 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSL-REGIKRIYSINNLVNF 148 A R +++ G+ S + + + V P + + + + N F Sbjct: 225 FA-RTTARLMVILGGLGVASSI----FLFSAKTVFPGWLALIPTVSSVLILLGGANCAGF 279 Query: 149 MKSFV---KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 + + + + VG + ++ ++ + S + + +++ L AT Sbjct: 280 LHALLSNRPALAVGDLSYAIYLWHWPLIIFYRQHISES--FSVIHGLLFCSVVLALSYAT 337 Query: 206 LTVLDIGWSYHQWYS 220 +++ + + Sbjct: 338 KVLIEDPFRRLSFAR 352 >gi|282889726|ref|ZP_06298265.1| hypothetical protein pah_c004o082 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500300|gb|EFB42580.1| hypothetical protein pah_c004o082 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 417 Score = 38.6 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 16/124 (12%) Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100 + +++L FS S+ +D LL S I I + L A + + Sbjct: 143 VIGVLFLAMLFSFATLSLPNDKRELLHSFFSGLYAAIMKITTWIVWLMPFAIFAFLTLFI 202 Query: 101 -------------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 L++ + + L+Q + +L V K++S + K ++ +L Sbjct: 203 RDMREGLEIKSLALYLSCVVIANLVQGLLIL---PVFLKIKKISPFQTAKGMFPALSLAF 259 Query: 148 FMKS 151 F KS Sbjct: 260 FSKS 263 >gi|88195719|ref|YP_500528.1| phage tape measure protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87203277|gb|ABD31087.1| phage tape measure protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329727749|gb|EGG64203.1| TMP repeat protein [Staphylococcus aureus subsp. aureus 21189] Length = 1155 Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|222153067|ref|YP_002562244.1| transporter permease [Streptococcus uberis 0140J] gi|222113880|emb|CAR42042.1| putative transporter permease protein [Streptococcus uberis 0140J] Length = 651 Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 3/149 (2%) Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 LLAS+ L I I+ + + ++ GL ++ + + L Sbjct: 21 FLLASSVLFMLNGIVIIILMSPISEGMQNGKILLGLAAVVLTIFATIMEIYSYNFLLKQR 80 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN 180 F ++ K+ + +++ F+ +I++G+I + + ++ + L + Sbjct: 81 SREFGLYNILGMTKKQIGLVSILELWILFLAVIIIGSIASYIFSHLFYLIFVNLVHYNKL 140 Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVL 209 I AF V +I + + + + Sbjct: 141 QLEITPIAFVQTSIVFALIFVLLMFIGLF 169 >gi|215401220|ref|YP_002332525.1| putative tape measure protein [Staphylococcus phage phiSauS-IPLA88] gi|215260447|gb|ACJ64578.1| gp50 [Staphylococcus phage phiSauS-IPLA88] Length = 1155 Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|119494160|ref|XP_001263990.1| FAD binding domain protein [Neosartorya fischeri NRRL 181] gi|119412152|gb|EAW22093.1| FAD binding domain protein [Neosartorya fischeri NRRL 181] Length = 1100 Score = 38.3 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 73/247 (29%), Gaps = 33/247 (13%) Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-- 99 + I + + + L + + ED S + LL L S L+I + Sbjct: 488 SGSIVISWLGKTPASGFLNMLVSVFSFPILD--EDPSARLHLLNFLPQLISPLLIYTIEG 545 Query: 100 -------LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 L + + + +Q + + + F + G + I S Sbjct: 546 YRLGNQGSLLALPSLFTAGMQVQGIGRMAPLHAIFSAI---FGTESIPGRAVPKEVAMSL 602 Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 V + +G + + + +P + L + L V Sbjct: 603 VPAVTLGFV-----------LPTIMFFSPTANLPAWQNWIALWQFAPPLVNVLTAVFSAV 651 Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272 + S +E + E K+ K S+ R+ + +++T + Sbjct: 652 LRRWRHRHS---SPEEHEAEFKRYE-----KRDVPSLQRAYMYAFAVQSTVHIATMAYAW 703 Query: 273 THYALAL 279 TH +++ Sbjct: 704 THPGISI 710 >gi|319894690|gb|ADV76501.1| phage tape measure protein [Staphylococcus phage TEM126] Length = 910 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 288 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 347 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 348 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 402 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 403 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 455 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 456 IVIGVIAALIAIFVLLWNKNEGFRN 480 >gi|187779392|ref|ZP_02995865.1| hypothetical protein CLOSPO_02988 [Clostridium sporogenes ATCC 15579] gi|187773017|gb|EDU36819.1| hypothetical protein CLOSPO_02988 [Clostridium sporogenes ATCC 15579] Length = 464 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 144 FVVAGGVLIAISFLWGIYSFDPKSTQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 203 Query: 97 PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 PG++ + G+ + + ++ FK++ G+ + + +K Sbjct: 204 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 255 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S + ++G ++T L + ++ I+ + I++ + I ++ D Sbjct: 256 SIFILPIIGILVTGVLMTLLGEPVAALN---KGIMAWLASLEQANPILLGIIIGCMSAFD 312 Query: 211 I 211 Sbjct: 313 F 313 >gi|254390605|ref|ZP_05005819.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces clavuligerus ATCC 27064] gi|294812202|ref|ZP_06770845.1| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces clavuligerus ATCC 27064] gi|197704306|gb|EDY50118.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces clavuligerus ATCC 27064] gi|294324801|gb|EFG06444.1| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces clavuligerus ATCC 27064] Length = 360 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 13/111 (11%) Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + V I + F + + P + F++ L L FI V Sbjct: 71 MLSMLATVAFIACFVI----FPIDKLVYIWPFGRVSALNFSLGWTLGAALFFIGAGAV-- 124 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261 W L MS +EI D+ +P +K + + R M Sbjct: 125 ------HWARTL-MSDEEIADDRHPIEASPEVKAKVMADFRQGAEESGMGR 168 >gi|114570438|ref|YP_757118.1| hypothetical protein Mmar10_1888 [Maricaulis maris MCS10] gi|114340900|gb|ABI66180.1| hypothetical protein Mmar10_1888 [Maricaulis maris MCS10] Length = 296 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 69/188 (36%), Gaps = 1/188 (0%) Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85 G S E + F L + + +S + + R +S + L Sbjct: 44 GQMAQSAELTGFWLTLDAVALIALTVGSLAFSAMAFRLAVRGEYDGRFGLRLSADEWRLF 103 Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145 +++ + LV+ LL MF I + + + + L ++ + + + + Sbjct: 104 VVAMLNAALVLIVALLAAMFAIVVFGTVAAGAVERAGIDAREAGIDLPMAMQYLTTADWV 163 Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 + + ++LVG ++ L ++ S S+ + ++L I+ +A Sbjct: 164 AVGAVNVLALLLVGWLVAR-LCLSFPASFAQRSVRVLSVWSLSEGQAWRILASIVAALAP 222 Query: 206 LTVLDIGW 213 L +++IG Sbjct: 223 LVIVEIGL 230 >gi|148267335|ref|YP_001246278.1| Phage-related protein-like protein [Staphylococcus aureus subsp. aureus JH9] gi|150393387|ref|YP_001316062.1| phage tape measure protein [Staphylococcus aureus subsp. aureus JH1] gi|258418119|ref|ZP_05682384.1| phage tail tape measure protein [Staphylococcus aureus A9763] gi|258448887|ref|ZP_05696996.1| phage tape measure protein [Staphylococcus aureus A6224] gi|258453874|ref|ZP_05701846.1| phage tape measure protein [Staphylococcus aureus A5937] gi|282929099|ref|ZP_06336680.1| tape measure protein [Staphylococcus aureus A10102] gi|295406605|ref|ZP_06816411.1| tape measure protein [Staphylococcus aureus A8819] gi|147740404|gb|ABQ48702.1| Phage-related protein-like protein [Staphylococcus aureus subsp. aureus JH9] gi|149945839|gb|ABR51775.1| phage tape measure protein [Staphylococcus aureus subsp. aureus JH1] gi|257838912|gb|EEV63391.1| phage tail tape measure protein [Staphylococcus aureus A9763] gi|257857783|gb|EEV80675.1| phage tape measure protein [Staphylococcus aureus A6224] gi|257863739|gb|EEV86495.1| phage tape measure protein [Staphylococcus aureus A5937] gi|282589291|gb|EFB94385.1| tape measure protein [Staphylococcus aureus A10102] gi|285816581|gb|ADC37068.1| phage tape measure protein [Staphylococcus phage phiSaST5K] gi|294968750|gb|EFG44773.1| tape measure protein [Staphylococcus aureus A8819] Length = 1155 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|56961800|ref|YP_173522.1| NahC family Na(+)/H(+) antiporter [Bacillus clausii KSM-K16] gi|56908034|dbj|BAD62561.1| NhaC family Na+:H+ antiporter [Bacillus clausii KSM-K16] Length = 472 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 18/185 (9%), Positives = 61/185 (32%), Gaps = 8/185 (4%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDI---SHIVFLLTHLSLS 90 I+ + + + GI + + + S + + + + + + Sbjct: 69 LPAVVIIILVGLTIGAWIGGGIVATMVFYGLKIMSPSFFLVSICVICAAVSLSIGSSWST 128 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 + + + G+ + + GI + ++ V++ + +S + + +L +K Sbjct: 129 MATIGVAGMGIGLSMGIPAAMV-AGAVISGAYFGDKLSPLSDTTNLAAGLTGTDLFEHIK 187 Query: 151 ----SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 S + +L+ I+ L N A+ + ++++ +A + Sbjct: 188 CMLVSTIPALLISLIVYWFLGRNEVEGNTASFADIERTMASLQENFVLSPWLLIVPLAVI 247 Query: 207 TVLDI 211 + Sbjct: 248 VFVMF 252 >gi|282919657|ref|ZP_06327389.1| tape measure protein [Staphylococcus aureus subsp. aureus C427] gi|282316295|gb|EFB46672.1| tape measure protein [Staphylococcus aureus subsp. aureus C427] Length = 1155 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|126641621|ref|YP_001084605.1| hypothetical protein A1S_1576 [Acinetobacter baumannii ATCC 17978] gi|169796128|ref|YP_001713921.1| hypothetical protein ABAYE2057 [Acinetobacter baumannii AYE] gi|213157137|ref|YP_002319183.1| hypothetical protein AB57_1820 [Acinetobacter baumannii AB0057] gi|215483582|ref|YP_002325803.1| hypothetical protein ABBFA_001900 [Acinetobacter baumannii AB307-0294] gi|239502180|ref|ZP_04661490.1| hypothetical protein AbauAB_07695 [Acinetobacter baumannii AB900] gi|332851782|ref|ZP_08433707.1| hypothetical protein HMPREF0021_01279 [Acinetobacter baumannii 6013150] gi|126387505|gb|ABO12003.1| putative membrane protein [Acinetobacter baumannii ATCC 17978] gi|169149055|emb|CAM86932.1| conserved hypothetical protein; putative membrane protein [Acinetobacter baumannii AYE] gi|213056297|gb|ACJ41199.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213988447|gb|ACJ58746.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|332729789|gb|EGJ61124.1| hypothetical protein HMPREF0021_01279 [Acinetobacter baumannii 6013150] Length = 303 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + SL I L + F ++ + +L + L ++ + L + Sbjct: 2 QSISLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 S ++ P LL+ + +GS+ F + E +K S+ +N +K+ Sbjct: 62 STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110 Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 K L +G I+ I LT+ + + + + AF + + + I Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170 Query: 204 ATLTVL 209 L Sbjct: 171 VPLAAF 176 >gi|326431829|gb|EGD77399.1| hypothetical protein PTSG_08494 [Salpingoeca sp. ATCC 50818] Length = 1587 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 11/131 (8%) Query: 12 EAPSSKKIEDALNE----GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67 E +K++D + G ++ S S L + S I + +L+ Sbjct: 985 EQKEQRKLDDLRKKGRLRGQLLR-QQQSSAKSTLGFFTLTYYSLSLWISRLWRNLYQFFT 1043 Query: 68 S---ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + +R E ++ + A L++ + + + + Q I + Sbjct: 1044 TFELFGRRLHEVEGQFGTVVYQYFVFARSLILLNFICAIAWAAFVIIPQSILL---QEPD 1100 Query: 125 PSFKRVSLREG 135 F L G Sbjct: 1101 VDFDPSDLLTG 1111 >gi|66395294|ref|YP_239580.1| ORF001 [Staphylococcus phage 69] gi|62635645|gb|AAX90756.1| ORF001 [Staphylococcus phage 69] Length = 1155 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|332865838|ref|ZP_08436622.1| hypothetical protein HMPREF0020_00228 [Acinetobacter baumannii 6013113] gi|332735050|gb|EGJ66135.1| hypothetical protein HMPREF0020_00228 [Acinetobacter baumannii 6013113] Length = 303 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + SL I L + F ++ + +L + L ++ + L + Sbjct: 2 QSISLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 S ++ P LL+ + +GS+ F + E +K S+ +N +K+ Sbjct: 62 STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110 Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 K L +G I+ I LT+ + + + + AF + + + I Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170 Query: 204 ATLTVL 209 L Sbjct: 171 VPLAAF 176 >gi|118430776|ref|YP_874001.1| phage tape measure protein [Staphylococcus phage phiNM] gi|151221992|ref|YP_001332814.1| phage tape measure protein [Staphylococcus aureus subsp. aureus str. Newman] gi|104641668|gb|ABF73082.1| phage tape measure protein [Staphylococcus aureus phage phiNM1] gi|150374792|dbj|BAF68052.1| phage tape measure protein [Staphylococcus aureus subsp. aureus str. Newman] Length = 1155 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|152981779|ref|YP_001353589.1| hypothetical protein mma_1899 [Janthinobacterium sp. Marseille] gi|151281856|gb|ABR90266.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 309 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 28/71 (39%) Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 ++ + +L L + ++ + L ++ K I+++ + + W Sbjct: 135 FIIFDALGAALWAGSAIFLGSLFSSAVADLLDILASLGKWGILLVALAFAVYLAKKWWQR 194 Query: 216 HQWYSKLKMSK 226 H + L+M++ Sbjct: 195 HSFLKDLRMAR 205 >gi|326440643|ref|ZP_08215377.1| putative ubiquinol-cytochrome c reductase iron-sulphur subunit [Streptomyces clavuligerus ATCC 27064] Length = 331 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 13/111 (11%) Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + V I + F + + P + F++ L L FI V Sbjct: 42 MLSMLATVAFIACFVI----FPIDKLVYIWPFGRVSALNFSLGWTLGAALFFIGAGAV-- 95 Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261 W L MS +EI D+ +P +K + + R M Sbjct: 96 ------HWARTL-MSDEEIADDRHPIEASPEVKAKVMADFRQGAEESGMGR 139 >gi|258440739|ref|ZP_05690681.1| phage tape measure protein [Staphylococcus aureus A8115] gi|282894704|ref|ZP_06302931.1| tape measure protein [Staphylococcus aureus A8117] gi|257852480|gb|EEV76400.1| phage tape measure protein [Staphylococcus aureus A8115] gi|282762981|gb|EFC03114.1| tape measure protein [Staphylococcus aureus A8117] Length = 1155 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|308176267|ref|YP_003915673.1| disulfide bond formation protein [Arthrobacter arilaitensis Re117] gi|307743730|emb|CBT74702.1| putative disulfide bond formation protein [Arthrobacter arilaitensis Re117] Length = 299 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 20/183 (10%) Query: 33 EASLFSSILACLIYLL----------FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 + L S+ L ++ LL FF S LH L+ + + + Sbjct: 2 DIGLLSAFLGGMLALLSPCSALLLPAFFASTVGSGPRLYLHGLVFYLGLALVLVPAGLGV 61 Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 L L+ R +I + M+ +G +L+ P F ++ R Sbjct: 62 GAVGLFLATERELIVLIASLMLIAMGIIYF-AGFGFDLSRWIPGFSKL-----QHRASGG 115 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 L +K+ + VG + ML + ++ V +++ +F Sbjct: 116 KGL---LKTLA-LGAVGGVSGFCAGPILGAMLTLAAVQGDAVSGGVLLAVYGAGMVVPMF 171 Query: 203 IAT 205 + Sbjct: 172 VLA 174 >gi|184157943|ref|YP_001846282.1| hypothetical protein ACICU_01623 [Acinetobacter baumannii ACICU] gi|183209537|gb|ACC56935.1| predicted membrane protein [Acinetobacter baumannii ACICU] gi|322508262|gb|ADX03716.1| Putative membrane protein [Acinetobacter baumannii 1656-2] gi|323517888|gb|ADX92269.1| hypothetical protein ABTW07_1840 [Acinetobacter baumannii TCDC-AB0715] Length = 303 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + SL I L + F ++ + +L + L ++ + L + Sbjct: 2 QSISLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 S ++ P LL+ + +GS+ F + E +K S+ +N +K+ Sbjct: 62 STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110 Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 K L +G I+ I LT+ + + + + AF + + + I Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170 Query: 204 ATLTVL 209 L Sbjct: 171 VPLAAF 176 >gi|269838968|ref|YP_003323660.1| ribonuclease BN [Thermobaculum terrenum ATCC BAA-798] gi|269790698|gb|ACZ42838.1| ribonuclease BN [Thermobaculum terrenum ATCC BAA-798] Length = 363 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 27/176 (15%) Query: 27 NAPISREASLF-SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED--ISHIVFL 83 S+ F S L ++ L+ S SV ++V+ R + I+ Sbjct: 105 QIAQSKATGAFGLSALVSILLALWGVSGAFRSVMEAMNVMYEVKEGRPFWKRYLISILLS 164 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 L L + LV+ + I PV + + Sbjct: 165 LGAAVLIIAALVLVVFGADIATAIARASAGLGPVFRWTWIILQW----PV---------- 210 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199 V +L+ + + FI+ P S++ A + V +L + Sbjct: 211 --------LVGFVLLAFALIYYFAPDVEQQFRFIT--PGSLVAVALWLVFSLLFSL 256 >gi|256825137|ref|YP_003149097.1| choline/carnitine/betaine transport [Kytococcus sedentarius DSM 20547] gi|256688530|gb|ACV06332.1| choline/carnitine/betaine transport [Kytococcus sedentarius DSM 20547] Length = 603 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 22/205 (10%), Positives = 64/205 (31%), Gaps = 35/205 (17%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 E ++ L+ +F + G ++ ++ + D + +F + Sbjct: 384 EFLAGVLLVPALLSFFWFSTLGGTALFREIFGGGGLIGEGGAVDTNTALFQMLQDLPGGV 443 Query: 93 RLVIPGLLLFMMFGIGSY----LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148 L LL+ ++F + S + + + P++ R Sbjct: 444 FLAGVALLMVVVFFVTSSDSGSFVVDMLASGGSQEPPTWSR------------------- 484 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 I + + +L +A+P + L + +LL + + Sbjct: 485 ------------IFWAVVEGSIAAILILATADPAAALGALQTMSILTALPVLLLLVAIAW 532 Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEI 233 + + + + ++ Q +++E+ Sbjct: 533 ALVRALSAEHHRERRLEHQMMREEM 557 >gi|297246955|ref|ZP_06930723.1| tape measure protein [Staphylococcus aureus A8796] gi|297176212|gb|EFH35510.1| tape measure protein [Staphylococcus aureus A8796] Length = 731 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 163 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 222 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 223 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 277 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 278 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 330 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 331 IVIGVIAALIAIFVLLWNKNEGFRN 355 >gi|18397813|ref|NP_564374.1| unknown protein [Arabidopsis thaliana] gi|13272451|gb|AAK17164.1|AF325096_1 unknown protein [Arabidopsis thaliana] gi|4512625|gb|AAD21694.1| ESTs gb|T20423, gb|AA712864, gb|H76323 and gb|Z25560 come from this gene [Arabidopsis thaliana] gi|19698823|gb|AAL91147.1| unknown protein [Arabidopsis thaliana] gi|21386969|gb|AAM47888.1| unknown protein [Arabidopsis thaliana] gi|21553567|gb|AAM62660.1| unknown [Arabidopsis thaliana] gi|332193194|gb|AEE31315.1| uncharacterized protein [Arabidopsis thaliana] Length = 321 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 46/133 (34%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 A++ ++ + FS + ++ L + L ++ L + Sbjct: 98 AAVVFTVASLYTGKPVSFSSTLSAIPKVFKRLFITFLWVALLMFAYNAVFFVFLVMLLVA 157 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 L + L L ++ G+ ++ + + +S+ E + I ++ +K Sbjct: 158 LDLNSLGLAIVAGVIISVLYFGVHVYFTALWHLGSVISVLEPVYGIAAMRKAYELLKGKT 217 Query: 154 KIILVGTIITISL 166 K+ + + + L Sbjct: 218 KMAMGLIFVYLFL 230 >gi|299137852|ref|ZP_07031033.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX8] gi|298600493|gb|EFI56650.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX8] Length = 749 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 59/199 (29%), Gaps = 30/199 (15%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 +F ++LA + L G + + L + A K + ++ F ++ A+ Sbjct: 436 PVFVAVLASFFFFLALSLAGQFELG--LSLTSAGGGLAKKQGLTGSFFTGVLATVVATPC 493 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHV-----------KPSFKRVSLREGIKRIYSIN 143 P + + F + V + +P + ++ R G Sbjct: 494 TGPLMGAAIGFALAQPAWLTFLVFTALALGLALPYLALTMQPQWTKILPRPG-------- 545 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM----- 198 + K +IL T I ++ + D I + + ++ Sbjct: 546 AWMEVFKQLTSVILFITAIWLTWVFGHLYANDGIDRIVALLACFLVLAIAGWVLGRWPAK 605 Query: 199 ----ILLFIATLTVLDIGW 213 I+ + L L I Sbjct: 606 WGSTIVAVLLILGGLIIPL 624 >gi|296188574|ref|ZP_06856962.1| putative hydrogenase 4 subunit F [Clostridium carboxidivorans P7] gi|296046838|gb|EFG86284.1| putative hydrogenase 4 subunit F [Clostridium carboxidivorans P7] Length = 486 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 15/191 (7%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 S+ + + ++ LF S ++++++ ++ S L I F LSL A+ Sbjct: 97 SISINFAKIYYFLFNLFVLSMIAVAISNNIILMWISLEATTLSTAFLIGFNRHKLSLEAA 156 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 I + ++ G+ ++ + PS K ++ +K +N KS Sbjct: 157 WKYIIICSIGIVLGLIGIIL-----FIYSSGDPSNKVLNWTYLVKNYSLLN------KSI 205 Query: 153 VKI----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 VK I VG L + + D S P I + + + ++L + Sbjct: 206 VKFGFCFIFVGIATKAGLAPMHTWLPDAHSEAPSPISAMMSGVLLNLALYVVLRFYIIVK 265 Query: 209 LDIGWSYHQWY 219 L G ++ Sbjct: 266 LISGLEKMKYL 276 >gi|158289571|ref|XP_559367.3| AGAP000727-PA [Anopheles gambiae str. PEST] gi|157018581|gb|EAL41121.3| AGAP000727-PA [Anopheles gambiae str. PEST] Length = 2046 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA--- 204 +K+ + + L+ + + + ++ + D S + +V ++LI ++ +A Sbjct: 831 LIKTVL-VTLMALVYCLFIELSHANIFDCYDQRVESAIPLHTISVARILIFMIAILAHGR 889 Query: 205 ---TLTVLDIGWSYHQWYSKLKMS 225 LD W K +MS Sbjct: 890 QVEWTARLDFLWQLQASQEKKEMS 913 >gi|116617300|ref|YP_817671.1| hypothetical protein LEUM_0148 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096147|gb|ABJ61298.1| Uncharacterized conserved membrane protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 387 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 5/162 (3%) Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLI 112 + S S + + L Q++ + I + + L A + +L F+ G + Sbjct: 91 MLSEISGIFMFLLIYFQQQRQQIDKLRRKTSWRVLPALTVAFAIILAFVTSGFFWAINYL 150 Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF-MKSFVKIILVGTIITISLTENYF 171 + +L F + IYS ++ + S + ++G ++T +T + Sbjct: 151 FQTASFDLFTSIALFTMFNGIINFLMIYSALSISTLFITSIFVMTIIGGVLTAMVTNSSR 210 Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 + + + +A + + +IL + L ++D + Sbjct: 211 MWWQYNLSFLGT--DNALDSWQFNATLILAGLIWLALVDYLF 250 >gi|255065639|ref|ZP_05317494.1| rod shape-determining protein RodA [Neisseria sicca ATCC 29256] gi|255049957|gb|EET45421.1| rod shape-determining protein RodA [Neisseria sicca ATCC 29256] Length = 387 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 27/177 (15%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 LF +LA I LF +YS L T + + + F+ + A+++ Sbjct: 23 LFFPMLAIYIMSLFL----LYSADGQDFGQLEHKTLHTVVGFALLWFVASFKPRDAAKVA 78 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +P L+ ++ + + + ++ F R+ E +KI Sbjct: 79 LPMYLIGVLLLVAVEVAGVTVNGSTRWLELGFTRIQPSE-----------------IMKI 121 Query: 156 ILVGTIITIS------LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 +L T+ L ++ + + P +++ VLIM Sbjct: 122 VLPMTVAWYFQRHEGRLKWFHYIIAMLLILIPVALILKQPDLGTAVLIMASGIFIVF 178 >gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum ATCC 700975] gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum ATCC 700975] gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum ATCC 700975] Length = 1212 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 7/54 (12%) Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349 N +A + R++A + +LA L + IP +AV ++ + Sbjct: 228 TNEVAARARELARKFG----GNAALAELL---TKVGEHIPAEGMEAVLAVLADV 274 >gi|167760727|ref|ZP_02432854.1| hypothetical protein CLOSCI_03112 [Clostridium scindens ATCC 35704] gi|167661614|gb|EDS05744.1| hypothetical protein CLOSCI_03112 [Clostridium scindens ATCC 35704] Length = 491 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 11/107 (10%) Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 +GT+ L + +++ I A T +++L FI L + Sbjct: 9 IGTVYWWILDHLF--LINIIFALLIIFFQRRNPTTVWAWLLLLYFIPVLGFVLYLVLGQN 66 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264 + +M K +K+ G IK + S R K+ Sbjct: 67 FRKD-RMFK------MKEIEG--EIKYAVRRQEESIYRKKLRLRDPE 104 >gi|311249016|ref|XP_003123426.1| PREDICTED: EGF-like module-containing mucin-like hormone receptor-like 2-like, partial [Sus scrofa] Length = 828 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 80/218 (36%), Gaps = 22/218 (10%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 E + SI+A ++ L+ S + + LH+ L +A + + S + + L Sbjct: 601 EIKVLCSIIAGALHYLYLAS-FTWMLLEGLHLFL-TARNLMVVNYSSVNRFMKKLMFPVG 658 Query: 93 RLVIPGLLLFMMFGIGSYLIQR----------IPVLNLNHVKPSFKRVSLREGI------ 136 V P +++ + +L + + ++L + Sbjct: 659 YGV-PAVIVTISAATRPHLYGTSSRCWLHTEEGFIWTFLGPVCTIFSINLVFFLITFWIL 717 Query: 137 -KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195 ++ S+NN V+ +++ +++ + + + + ++ + F + + Sbjct: 718 KNKLSSLNNDVSTLRNI-RVLTFKATAQLFILGCTWCLGILQVGPAAHVMAYLFTIINSL 776 Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233 + + + L + Y +WY ++K +K E +E Sbjct: 777 QGVFIFLVYCLLSQQVRDQYRKWYKRVKETKTE-SEEY 813 >gi|16330156|ref|NP_440884.1| hypothetical protein sll1350 [Synechocystis sp. PCC 6803] gi|1652644|dbj|BAA17564.1| sll1350 [Synechocystis sp. PCC 6803] Length = 398 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 64/176 (36%), Gaps = 29/176 (16%) Query: 75 EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPSFKRVSLR 133 E I+ L + + +P LL+ + GIG + Q + + V Sbjct: 16 ETIAPRRSLPQWVFQESVEPAMPWLLVVTVVGIGLGLIFQSSWLGFTSAV---------- 65 Query: 134 EGIKRIYSINNLVNFMKSFV--KIIL---------VGTIITISLTENYFTMLDFISANPH 182 + ++S+ ++ +KS+V + + +G ++ I +Y + + + Sbjct: 66 --LALMFSLQVILPTIKSWVQHYLTVQERRSLLGGLGFVLAIGALAHYLGVYSSLKYWLN 123 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL-----KMSKQEIKDEI 233 Y F + + + + + + + + W + L ++++Q+ D Sbjct: 124 QFKYDEFGSWAEWVGALGQIMIAVLAVYVAWQQYVISKDLTIQQNRITQQQTVDAY 179 >gi|304443252|ref|YP_003857082.1| phage tape measure protein [Staphylococcus phage SAP-26] gi|302749860|gb|ADL66945.1| phage tape measure protein [Staphylococcus phage SAP-26] Length = 1155 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYVQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136 L L LV L + S + + + + F + Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647 Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + + +K +KII V + + F + I ++ + Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700 Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221 I+I + A + + + W+ ++ + Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725 >gi|122891770|ref|YP_001004316.1| tail protein [Staphylococcus phage phiETA2] gi|121309249|dbj|BAF43871.1| tail protein [Staphylococcus phage phiETA2] Length = 1155 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 60/187 (32%), Gaps = 13/187 (6%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 L ++ ++ L F+ + + S + + + T + ++ L L Sbjct: 552 PLIMQLIGNIVRGLVAFATAMAPIASAVLRVAVAITGW-IANLFEAHPATAQLVGVIITL 610 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 V L + S + + + + F + + + +K +K Sbjct: 611 VGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR-----AGLTILKGAFMLLKGPLK 665 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214 II V + + F + I ++ + I+I + A + + + W+ Sbjct: 666 IISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVIAALIAIFVLLWN 718 Query: 215 YHQWYSK 221 ++ + Sbjct: 719 KNEGFRN 725 >gi|194206663|ref|XP_001918225.1| PREDICTED: transient receptor potential cation channel subfamily M member 7 [Equus caballus] Length = 1909 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 22/99 (22%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 302 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 361 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A L ++KQ +P Sbjct: 362 GRAA------------------DLLAYIYKQTEEGGNLP 382 >gi|163943361|ref|YP_001642591.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163865558|gb|ABY46616.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 801 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 28/214 (13%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+FS +++ I++ F ++A ++ + F ++ S Sbjct: 10 LSIFSLLVSAAIFIQVFTIHSRRYFEKFYGGIIA---------VTLMFFSFPYMGFSYDL 60 Query: 94 LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 +P +L F+ FG + S +I RI + P + + L Sbjct: 61 RAVPLILSFIYFGRIAGWITLISIIIMRIFYIGGYWEPPVMA----------YFGMGILF 110 Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 K++ K + + S+ ++ F +LI + L A Sbjct: 111 TIFKTYFKSLHPFKSAPLYFSVFVGMKWLVGVFFITTVLYTPGLVFIALGLLIGVFLMEA 170 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + KLK SKQE+KD + + G Sbjct: 171 YQRLYYLTQDLSKMNQKLKKSKQELKDTVHELQG 204 >gi|119961620|ref|YP_947519.1| major facilitator transporter [Arthrobacter aurescens TC1] gi|119948479|gb|ABM07390.1| putative major facilitator superfamily (MFS) transporter [Arthrobacter aurescens TC1] Length = 451 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 13/171 (7%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 +A S ++A + PG S ++ L A+ Sbjct: 248 DAGTVSGLMALFVATAIVAGPGFGRFVSR---------HPMRRSAMVLLIALATTMAWAA 298 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSLREGIKRIYSINNLVNFMKS 151 LV+P + I ++ ++ + F R + I I N+ F+ + Sbjct: 299 VLVLPERAPLWLLAILVVVLAVGGPGSM--IGFDFARTFNPSHRIGTATGIVNVGGFIAA 356 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V I L+G ++ L + F+ D P I F + + +++L Sbjct: 357 LVAIYLIGVVL-DVLYASGFSDGDLYGLAPFRIALSVQFILLALGTVLILA 406 >gi|325972233|ref|YP_004248424.1| ABC transporter transmembrane protein [Spirochaeta sp. Buddy] gi|324027471|gb|ADY14230.1| ABC-type transporter, integral membrane subunit [Spirochaeta sp. Buddy] Length = 335 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 41/217 (18%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 RE+ FS ++ + LF + LL + +++ +++ + + Sbjct: 9 RMRESEFFSLLITIVAIFLFMY-------------LLNGSKFLSFRNLTTMMYQMPTIGF 55 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-KRVSLREGIKRIYSINNLVNF 148 A ++I L + I + V+++ + V+ G + Sbjct: 56 MAIGMLIAELTGGINLSIVAAANFNGIVIHVVLKSLTMGDTVNASNG-------QVYIAL 108 Query: 149 MKSFVKIILVGTIITISLTEN--------------------YFTMLDFISANPHSILYHA 188 + + IL+G I + +++ TM IS P I + Sbjct: 109 LIGLLACILIGFINGLLISKLKIPALLVTLGMSTLLQGLSILITMGYTISGFPEQITWFG 168 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225 V + + I+LFI + VL + +L M+ Sbjct: 169 VGEVIGIPVSIILFIVVVFVLHFILDRTVYGKQLYMT 205 >gi|190337434|gb|AAI63719.1| Trpm7 protein [Danio rerio] Length = 1789 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K I RI ++ + +I P L Y+Q PV+V +G Sbjct: 256 EVRLRRELEKHIQLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 315 Query: 297 NLIA 300 A Sbjct: 316 GRAA 319 >gi|300694685|ref|YP_003750658.1| transcription regulator [Ralstonia solanacearum PSI07] gi|299076722|emb|CBJ36062.2| putative transcription regulator [Ralstonia solanacearum PSI07] Length = 346 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE--------EPSLARSLFKQ-VPINSAIP 335 P + G + +A + ++A H I + E + L+R L+ + I Sbjct: 242 REPRPTAIFAGNDDMAAGVLRVAQAHGIRVPEELSIAGYDDTPLSRQLWPSLTTVRQPIQ 301 Query: 336 PVFYKAVAQLIY 347 + Y AV QLI Sbjct: 302 DMAYAAVEQLIA 313 >gi|126278251|ref|XP_001380566.1| PREDICTED: similar to transient receptor potential cation channel, subfamily M, member 7 [Monodelphis domestica] Length = 2120 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 506 EVRLRRELEKAINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 565 Query: 297 NLIA 300 A Sbjct: 566 GRAA 569 >gi|170744661|ref|YP_001773316.1| cytochrome c biogenesis protein transmembrane region [Methylobacterium sp. 4-46] gi|168198935|gb|ACA20882.1| cytochrome c biogenesis protein transmembrane region [Methylobacterium sp. 4-46] Length = 734 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 10/165 (6%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS-LSASRLVIPG 98 ++A L YLLF + ++ F L+ + A+ P Sbjct: 402 VVAGLAYLLFAMGLSLSGALPIGGGIVGLGDGLTRRAGLEGSFFTGVLATIVATPCTAPF 461 Query: 99 LLLFMMFGIGSYLIQRIPVLN---LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 + + F + + + L P G++R+ + +K F+ Sbjct: 462 MAAAVGFALTQGAALGLAIFAALGLGLALPFLLLTLWPAGLRRLPRPGAWMETLKGFLAF 521 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 L T+ + +L L F + +L Sbjct: 522 PLYATVAWLVW------VLSQQVGPAGLFLALIGFVLIGFCAFVL 560 >gi|210062492|ref|YP_002300509.1| putative integral membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213027042|ref|ZP_03341489.1| hypothetical protein Salmonelentericaenterica_33279 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|134270034|emb|CAL91907.1| putative integral membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 141 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 22/160 (13%) Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 + P L + + +G + + + N +KR+ K I+ + Sbjct: 3 LFDLFNITHPVLTVPITIIMGLIFLTVLFNVFKNQFLTKYKRLDESGFWKNIFHLLKW-- 60 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 +K KI + + S+T + M+ + + IL ++ Sbjct: 61 -LKG--KINYLVGVYFFSMTLLFSIMVFIFRDETFGL---------DLTAYILCGFISIG 108 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + + ++Y LK + ++++ E K+ K R+K Sbjct: 109 LSILFYTYRDINFDLK-TYKQVRQEQKE-------KRRRK 140 >gi|290979700|ref|XP_002672571.1| predicted protein [Naegleria gruberi] gi|284086149|gb|EFC39827.1| predicted protein [Naegleria gruberi] Length = 329 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 78/220 (35%), Gaps = 45/220 (20%) Query: 33 EASLFSSILACLIYLLFFFSPGIYS-----------VTSDLHVLLASATQRKLEDISHIV 81 E +L S+L+ +++ F++ + + + +L++ K+ H + Sbjct: 35 ELTLVVSVLSFGVFVGVFYTAWYNAEKITMRDYIGVFITVIGILISVIFSDKIYQPLHPI 94 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 ++ +S IP L + ++ + LI +V + +S Sbjct: 95 -TISFISGQILDFNIPILFVILIVILPFILIVLGIFRVFKNVFFN-SSISATFAASNFII 152 Query: 142 INNLVNFMKSFV------------KIILVGTIITISLTEN-----------------YFT 172 + +K+ V +IL+ +++ L + Y+T Sbjct: 153 FKLFIELVKTSVETDDNQFKHWATYLILILSVVYTILHTHFTQVTLVQYEFTISNVLYYT 212 Query: 173 MLDFISANPHSILYHAFF---TVRKVLIMILLFIATLTVL 209 ++ FI+ +++ + + VL+ I FI + +L Sbjct: 213 IMSFITVCGGELIFREWSDTEIFQLVLLFIGWFIQFIGIL 252 >gi|71834284|ref|NP_001025232.1| transient receptor potential cation channel subfamily M member 7 [Danio rerio] gi|62001713|gb|AAX58598.1| transient receptor potential melastatin 7 [Danio rerio] Length = 1774 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K I RI ++ + +I P L Y+Q PV+V +G Sbjct: 256 EVRLRRELEKHIQLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 315 Query: 297 NLIA 300 A Sbjct: 316 GRAA 319 >gi|256087536|ref|XP_002579923.1| cation efflux protein/ zinc transporter [Schistosoma mansoni] gi|238665420|emb|CAZ36162.1| cation efflux protein/ zinc transporter, putative [Schistosoma mansoni] Length = 2163 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 10/149 (6%) Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L LAS ++ + I L + +L + ++IP LL F S + + + Sbjct: 1521 LDAGLASISRTLVTSIGGAKRLYSLSALISFIILIPLFLLTHFFNENSLHTKVNWLFWMV 1580 Query: 122 HVKP----SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177 ++ F SL G ++ K +++ ++I L + ++ F+ Sbjct: 1581 YISIMHVIDFYMTSLVSG---RLGAQSVTRLAKLT---VVITSLIFSLLWSSSDSVEQFV 1634 Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATL 206 S + + IL ++F ++ I +++ + + Sbjct: 1635 SFDRNEILVNSFLPKHQMSIGVIVSVVCI 1663 >gi|320162124|ref|YP_004175349.1| hypothetical protein ANT_27230 [Anaerolinea thermophila UNI-1] gi|319995978|dbj|BAJ64749.1| hypothetical protein ANT_27230 [Anaerolinea thermophila UNI-1] Length = 257 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 26/183 (14%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 L + + L+F I ++ + + L D + L+ + L Sbjct: 79 LLNGLKVFGGGLVFLLPSLILAIKAFVLYFGGMVVFAALADAGREGLAFLLMFLAVTLLF 138 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 + +L F+ + IG L+Q P+ ++LRE ++ K Sbjct: 139 VFQMLGFLFYLIGGTLLQ-----------PALAHMALRESFSALFDFKGWWR----VFKA 183 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 G I+T L F + A + I L F+ LT +++ Sbjct: 184 SKGGFIVTFLLGVMLFYGIQL-----------ALALTFPIWIFFLFFLPVLTSFAFAYAF 232 Query: 216 HQW 218 W Sbjct: 233 TLW 235 >gi|147921370|ref|YP_684816.1| putative oligosaccharyltransferase [uncultured methanogenic archaeon RC-I] gi|110620212|emb|CAJ35490.1| putative oligosaccharyltransferase [uncultured methanogenic archaeon RC-I] Length = 845 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 23/198 (11%) Query: 31 SREASLFSSILACLIYLLFFFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFL-LTH 86 S E I+ ++ LL + + + ++ + S L FL + Sbjct: 298 SSEYLSSVGIVTAVVALLLVGPAAVTSYHGMRFEISAIHLSLFHLILMAGLAGFFLCMEG 357 Query: 87 LSLSASRLVIPGLLL----FMMFGIGSYLIQR-------------IPVLNLNHVKPSFKR 129 L L+ +R P +L ++ IG+ +++ + + + V S Sbjct: 358 LRLAVARAKAPWFVLPAGIVILGAIGALVVKTFLPAVFHNLEAGLTFLRSGSLVLSSISE 417 Query: 130 VSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 V+ +S+ L+ F+ S V + +VG I L + I S+ Sbjct: 418 VAPLLYWTGQFSL-TLIEAFLSSAVLLAIVGMAWFIYLFPARRPSNEEIFFLTWSVAIIV 476 Query: 189 FFTVRKVLIMILLFIATL 206 ++ I +L + Sbjct: 477 LGLLQSRFIYLLGACVAI 494 >gi|322806257|emb|CBZ03825.1| PTS system, galactose-inducible IIB component [Clostridium botulinum H04402 065] Length = 465 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 64/181 (35%), Gaps = 17/181 (9%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 PG++ + G+ + + ++ FK++ G+ + + +K Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S + ++G +IT L + ++ I+ + I++ + I ++ D Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGIMAWLASLEQANPILLGIIIGCMSAFD 313 Query: 211 I 211 Sbjct: 314 F 314 >gi|312793490|ref|YP_004026413.1| rod shape-determining protein roda [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180630|gb|ADQ40800.1| rod shape-determining protein RodA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 369 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 65/193 (33%), Gaps = 7/193 (3%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 I+ CLI + S T ++++ L + VF L + A+ V Sbjct: 18 TILMIILCLIGFILIASATNVLETGKYKLVISQVIWFCLGLSLYFVFSLIDYRIFANFYV 77 Query: 96 IPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLVNF 148 I +++ ++ GI QR + +P ++ + ++ ++ +N Sbjct: 78 IIYMIMVILLLYVDIKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENINK 137 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 K+ VK+++ I + + + + + + + + + Sbjct: 138 FKTLVKVLIFTAIPIVLVLKQPDLGTASVFIAIIATILFVAGLDLRYFYAAIGALLVFIP 197 Query: 209 LDIGWSYHQWYSK 221 + + H++ Sbjct: 198 IAWEFVLHEYQKD 210 >gi|73662042|ref|YP_300823.1| hypothetical protein SSP0733 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494557|dbj|BAE17878.1| hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 368 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 70/177 (39%), Gaps = 17/177 (9%) Query: 48 LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107 + F+ + + L VL Q + + + + + + LV+ L+ ++F Sbjct: 19 ILMFTIVSFIILFALTVLTFMPVQPAIYKLLMAMAMQQPIGGAIFSLVLAILIPLIVFIF 78 Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI----------YSINNLVNFMKSFVKIIL 157 Y + + ++ +V+ ++ +S+ LV + + + +L Sbjct: 79 IGYPLIAGTIYTIDKALNK-DKVNFKDLFSTFKKGKYLKGLKFSLFTLVFVIIALLLNLL 137 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL------FIATLTV 208 V ++ + + + + + +S++ H++ + + + I++ + F+A + + Sbjct: 138 VSKVLNLGIVQLFSALQGPLSSSDHALGWSLAYQIVAATIVLFIQSFIYWFLAIIAI 194 >gi|229096886|ref|ZP_04227855.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29] gi|228686496|gb|EEL40405.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29] Length = 801 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 77/214 (35%), Gaps = 28/214 (13%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+FS +++ I++ F ++A ++ ++F ++ S Sbjct: 10 LSIFSLLVSAAIFIQVFLIHSRRYFEKFYGGIIA---------VTLMLFSFPYMGFSYDL 60 Query: 94 LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 V+P +L F+ FG + S +I RI + P + S++ L Sbjct: 61 RVVPLILSFIYFGRIAGWITLISIIIMRIFFIGGYWEPPVIAYL----------SMSVLF 110 Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 K++ K + + S+ ++ + + +LI + L A Sbjct: 111 FTFKTYFKNLHPFKSASLYFSIFVGIKWLVGVLFNTTLLYTGGLLYIALGLLIGLFLMEA 170 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + +LK SKQE+ D + + G Sbjct: 171 YQRLYYLTQDLSKMNRELKKSKQELTDTVHELQG 204 >gi|229115874|ref|ZP_04245272.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3] gi|228667617|gb|EEL23061.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3] Length = 801 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 77/214 (35%), Gaps = 28/214 (13%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+FS +++ I++ F ++A ++ ++F ++ S Sbjct: 10 LSIFSLLVSAAIFIQVFLIHSRRYFEKFYGGIIA---------VTLMLFSFPYMGFSYDL 60 Query: 94 LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 V+P +L F+ FG + S +I RI + P + S++ L Sbjct: 61 RVVPLILSFIYFGRIAGWITLISIIIMRIFFIGGYWEPPVIAYL----------SMSVLF 110 Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 K++ K + + S+ ++ + + +LI + L A Sbjct: 111 FTFKTYFKNLHPFKSASLYFSIFVGIKWLVGVLFNTTLLYTGGLLYIALGLLIGLFLMEA 170 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + +LK SKQE+ D + + G Sbjct: 171 YQRLYYLTQDLSKMNRELKKSKQELTDTVHELQG 204 >gi|315150948|gb|EFT94964.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0012] Length = 683 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A + +E + L +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFAQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|116618915|ref|YP_819286.1| membrane protein, putative toxin regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097762|gb|ABJ62913.1| Predicted membrane protein, putative toxin regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 352 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 14/206 (6%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 LF +++A I L+ + + + + +A AT+ + + ++ + + Sbjct: 142 PLFVAVIAGGIGLMTLQPISV--LQTWIGDGVAYATELTPLVMGAALGVIFAFLIVSPLS 199 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 + + + G+GS + + V+ G + + + VK Sbjct: 200 SVGIAMAISLAGVGSGAANAGITVASFTLALMGASVNPIGGTLAHFVGSPKIQMANMLVK 259 Query: 155 ----------IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMILLF 202 ++G + T+ + F + L + + + + ILL Sbjct: 260 PKLFIPTSIGAAIMGAVATMLNIKGTPFSAGFGFSGLVGPLTAWSESDKSLVSIFSILLV 319 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQE 228 L V+ + +KLKM K E Sbjct: 320 FVILPVIIATVLKWLFMTKLKMIKAE 345 >gi|25027808|ref|NP_737862.1| putative cytochrome D ubiquinol oxidase subunit II [Corynebacterium efficiens YS-314] gi|259506198|ref|ZP_05749100.1| cytochrome D ubiquinol oxidase, subunit II [Corynebacterium efficiens YS-314] gi|23493091|dbj|BAC18062.1| putative cytochrome D ubiquinol oxidase subunit II [Corynebacterium efficiens YS-314] gi|259166175|gb|EEW50729.1| cytochrome D ubiquinol oxidase, subunit II [Corynebacterium efficiens YS-314] Length = 340 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 12/183 (6%) Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100 LA ++ ++ LH L + + + A+ +P + Sbjct: 156 LAAMLNPYALLGAAAFTALFTLHGLAFIRLKTTGDVRDQARKAFWPVFGLAAVTAVPYAV 215 Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 ++ G + I I VL G+ + + + + F+ S + ++ V Sbjct: 216 WTVLAHDGQWWIAGIAVLCA------------VAGMGFMLANRDGLAFLSSTISVVAVAA 263 Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220 ++ ++L N A+ + ++L L + L + GW+Y + Sbjct: 264 LLFVALFPNVMPTTLVDGASLDIWNASSNPYTLRILTWTALILTPLVLAYQGWTYWVFRK 323 Query: 221 KLK 223 +++ Sbjct: 324 RIR 326 >gi|328465387|gb|EGF36634.1| Na+/H+ antiporter [Listeria monocytogenes 1816] Length = 608 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 FS + A +LL L ++ R+L + F+L + L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 95 VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149 ++ + ++ + ++ + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + IL F + + IL F Sbjct: 286 -----FILLGTQLLQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 333 >gi|315607250|ref|ZP_07882251.1| NSS family sodium-dependent symporter [Prevotella buccae ATCC 33574] gi|315251067|gb|EFU31055.1| NSS family sodium-dependent symporter [Prevotella buccae ATCC 33574] Length = 457 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 23/138 (16%) Query: 91 ASRLVIP-GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI---------- 139 AS+L++P +L ++ + + L+ KP F +++ + + Sbjct: 171 ASKLLMPTLFILLLVIVVAACLLPGAGKGIAFLFKPDFGKMNSGVFLGALGQSFYSLSIA 230 Query: 140 ----------YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 +S N +KS +++ +V T++ + F + NP S F Sbjct: 231 MGCICTYASYFSRQT--NLLKSALQVAVVDTLVAVLAGLMIFPAAFSVGVNPDSGPSLIF 288 Query: 190 FTVRKVLIMILLFIATLT 207 T+ V + + + Sbjct: 289 ITLPNVFNVAFASMPLVG 306 >gi|254511002|ref|ZP_05123069.1| glycerophosphoryl diester phosphodiesterase family protein [Rhodobacteraceae bacterium KLH11] gi|221534713|gb|EEE37701.1| glycerophosphoryl diester phosphodiesterase family protein [Rhodobacteraceae bacterium KLH11] Length = 612 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%) Query: 69 ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL--FMMFGIGSYLIQRI----PVLNLNH 122 + Q L D +FLL+ A+ +V+ LL +F + + ++ Sbjct: 51 SDQSALTDQDIAMFLLSPAGFIAAIVVLSLFLLAEVFVFSVMAGSLRMGERDPWRAGSAS 110 Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182 ++ RV G + + LV + + + G I LTE + + +++ +P Sbjct: 111 IRLILSRVPALFGFAARFILRVLV---LALPFVAVAGAIAWWMLTE--YDINYYLTFHPP 165 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219 S VL + + I L+ + + Sbjct: 166 SFWVAVVLIGFVVLCLAWVLIRRLSAWALALHLVLFE 202 >gi|331006455|ref|ZP_08329758.1| putative integral membrane protein [gamma proteobacterium IMCC1989] gi|330419755|gb|EGG94118.1| putative integral membrane protein [gamma proteobacterium IMCC1989] Length = 141 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 1/134 (0%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + + + +A + L F+ ++V ++ + T+ + ++ + +SL + Sbjct: 8 QNINYIAVAIATIASYLLGFAWYHWAVFGEVWANALNITKEEADNTEGLGGAFI-VSLVS 66 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 + L M S ++ + + + G R S L+N S Sbjct: 67 GLTKALCVALLMAATNISGVLNGAFFGAVVAIVFIVTSLGYYNGFARTSSKLTLINSTHS 126 Query: 152 FVKIILVGTIITIS 165 V+I LVG II Sbjct: 127 IVEITLVGAIIGAF 140 >gi|307708835|ref|ZP_07645297.1| membrane protein, putative [Streptococcus mitis NCTC 12261] gi|307615201|gb|EFN94412.1| membrane protein, putative [Streptococcus mitis NCTC 12261] Length = 293 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 64/188 (34%), Gaps = 17/188 (9%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + ++ I+LL + + I+ +++ + L+A Sbjct: 91 LTAHVYVIGLFIWLLLVL------IGKFFKPFFILPYRTHFHVITFLIWFVIEFDLAAIG 144 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 L +P L + +F IG L+ + L K + +Y L + Sbjct: 145 LALPFLTILGLFAIGCILL-ALIYWMLRIELKDLKNL--------MYGEVKLPTLLDKIA 195 Query: 154 KIILV--GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 K + + ++ +++ NY I+ + L F + I ++ + + Sbjct: 196 KDLAIYGAGLLGLAVIVNYIFKAFSINFSHSVTLLGLFICWILLNIGLIAMLIFMEFPYF 255 Query: 212 GWSYHQWY 219 ++Y++W Sbjct: 256 LYAYYKWK 263 >gi|311258634|ref|XP_003127709.1| PREDICTED: transient receptor potential cation channel subfamily M member 1-like [Sus scrofa] Length = 385 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 308 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 367 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 368 G-RASDILSFAHKY 380 >gi|282876444|ref|ZP_06285310.1| lytic regulatory family protein [Staphylococcus epidermidis SK135] gi|281294696|gb|EFA87224.1| lytic regulatory family protein [Staphylococcus epidermidis SK135] Length = 309 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 35/230 (15%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +G S ILA + +LF I + + L+ L S L+ I Sbjct: 108 AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 158 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138 + + + ++ L+ + I + + + R +L+EG K Sbjct: 159 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 218 Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 I F + I L+ +II L + +S + V VL Sbjct: 219 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 278 Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247 + L +I +++ G+ +K++++ Sbjct: 279 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRR 306 >gi|257055641|ref|YP_003133473.1| hypothetical protein Svir_16110 [Saccharomonospora viridis DSM 43017] gi|256585513|gb|ACU96646.1| hypothetical protein Svir_16110 [Saccharomonospora viridis DSM 43017] Length = 543 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 61/199 (30%), Gaps = 23/199 (11%) Query: 23 LNEGNAP--ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80 +G P ++ F + A +I L V++A + ++ D++ Sbjct: 274 RVKGEPPPPRAKGELTFIVLGAVVISLAAMVKIHAIVALGFFGVMIARRGKGRIADLA-- 331 Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140 +A+ L++ + + + + + L+ + VS + ++ Sbjct: 332 ---------AAAVLMLVVFVTVTLAIGFATGLGLGWISALDTPSKVWSWVSPAAELGQLG 382 Query: 141 SINNLVNFM----------KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190 + +V + S + + G + L +++ + S+ Sbjct: 383 GVFGVVLGLGNHTGSIIAILSVLGYAVAGAVTVKFLWDSFHWRYRPLIGLGVSLGAFMML 442 Query: 191 TVRKVLIMILLFIATLTVL 209 V +L + L Sbjct: 443 HVSMQPWWLLWAVIPLAAA 461 >gi|149057061|gb|EDM08384.1| rCG24726, isoform CRA_a [Rattus norvegicus] Length = 665 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 329 G-RASDILSFAHKY 341 >gi|145481343|ref|XP_001426694.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393770|emb|CAK59296.1| unnamed protein product [Paramecium tetraurelia] Length = 2703 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 29/315 (9%), Positives = 100/315 (31%), Gaps = 58/315 (18%) Query: 29 PISREASLFSSILACLI----YLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84 ++ + L L+ + F ++ +++++ + + + Sbjct: 2359 FKIQQVQTMAIYLFLLLQPNYVMEFMTLISSRVISGNMYIMANVSYRYDTFKHDQWIAAF 2418 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSI 142 L +V+P + ++ + + + + + R +I+ Sbjct: 2419 GVPGLILWLIVLPVIFWYICYQGAQQMKLNSIIFRQSWGFFYYEYSRKRYYWEFLKIF-Y 2477 Query: 143 NNLVNFM----------KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192 +L++ + K + I++ +++ N + + + S + + V Sbjct: 2478 RSLISVLICYFQEEIIVKGILSFIVIYGYYGLTIHFNPYDLRKLNYLDQLSTVVLSLSLV 2537 Query: 193 RKVLI----------MILLFIATLTVLDIGWS-----------YHQWYSKLKMSKQEIKD 231 V + + + +L+ + + ++ L + +IK+ Sbjct: 2538 VGVFLYRTIQINFFGLTYAGYVVIAILNAIFLLLLFYNLFEEKFQEFAQSLDQVRDKIKE 2597 Query: 232 EIKQSYGNPII------KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285 + NP I + + AR + ++ + +R+ + + Q + Sbjct: 2598 KYPHLQQNPHIGPLLQNRTKLNQKAR-IMWQQLSKIVNRS------------IINWRQDK 2644 Query: 286 NDAPVLVAKGQNLIA 300 + P++ A ++ A Sbjct: 2645 SK-PLVFAIYEDEPA 2658 >gi|15614020|ref|NP_242323.1| glycine betaine transporter [Bacillus halodurans C-125] gi|10174074|dbj|BAB05176.1| glycine betaine transporter [Bacillus halodurans C-125] Length = 566 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 RE I+ L+ L++F + G ++ +++ A + + L L LSA Sbjct: 347 REFMAGVLIVPSLLALIWFTTFGGTALNLEMYGPGGIAELVTSQVELALFATLGELPLSA 406 Query: 92 SRLVIPGLLLFMMFGIGSYLIQR--IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 VI LL+ + F + + + ++P V + G Sbjct: 407 VTNVIAVLLILIFFITSADSASYVLGAMTSKGSLEPKLS-VKMVWGF------------- 452 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 L+ ++ L + +A+ + L A + ++ ++ +F Sbjct: 453 -------LIAGTASVLLLSGGGGLQALQTASIIAALPFAVIMIMMIISLLFMF----AKD 501 Query: 210 DIGWSYHQWYSKLKMSKQEIKDEI 233 D + +L K+EI+DE+ Sbjct: 502 DRAERKQKQTKQLSTLKEEIRDEM 525 >gi|86140165|ref|ZP_01058727.1| membrane protein, putative [Roseobacter sp. MED193] gi|85823102|gb|EAQ43315.1| membrane protein, putative [Roseobacter sp. MED193] Length = 503 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 6/204 (2%) Query: 28 APISR-EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 IS + S +LA + Y F + + V A+ ++ Sbjct: 49 VAISMGDPSAALILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGYPMAKQGKAGKA 108 Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 L+++A G + ++ I + + + +L + + G+ I + Sbjct: 109 LTIAAIASFAGGSIGALLLMIFAPALSSVALLFHSAEYFALM----VVGLSAIAAFAGTG 164 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 K+ + L G I+ F + F F T+ + + + + Sbjct: 165 QVAKALMMTTL-GLIMATVGEGALFNLPRFTMGIMDLQSGFGFITLAMAMFALPEALFLV 223 Query: 207 TVLDIGWSYHQWYSKLKMSKQEIK 230 I + L++++QE K Sbjct: 224 LKPKIQVGKGEEIKDLRITRQEAK 247 >gi|257069779|ref|YP_003156034.1| putative acyltransferase [Brachybacterium faecium DSM 4810] gi|256560597|gb|ACU86444.1| predicted acyltransferase [Brachybacterium faecium DSM 4810] Length = 691 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 16/188 (8%), Positives = 58/188 (30%), Gaps = 6/188 (3%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 + + A + F +S + ++ S + S + + + + Sbjct: 185 VVLVLFALVALASFAWSLVSTAAQQEIAYFDTSTRMWEFAAGSLLALWPAANAAAPASRR 244 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY-----SINNLVNFMK 150 + + + + LI +++ + P + G ++ + + Sbjct: 245 ARRVRTVLGWAGLAALISTGALIDGRSMFPGWIAAIPLLGATGVFLAGTTGSRLGADRLL 304 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + +G + ++ + + ++ T+ + ++L ++ T V+D Sbjct: 305 ASRPFSFLGDVSYGLYLVHWPLLTLLLLSSGRETAGLLRGTLVIAVSLLLAWLLTR-VVD 363 Query: 211 IGWSYHQW 218 +W Sbjct: 364 TPIRRWRW 371 >gi|262279071|ref|ZP_06056856.1| enterobactin exporter entS [Acinetobacter calcoaceticus RUH2202] gi|262259422|gb|EEY78155.1| enterobactin exporter entS [Acinetobacter calcoaceticus RUH2202] Length = 416 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 1/186 (0%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 S+ A + G VT+ + ++ + + I + L+ S + Sbjct: 109 SLYAIYFLSAWDGFFGALGVTAMMAIMPVIVGRENIVQARAISMVSVRLATVISPAIGGI 168 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 L+ F ++ +L + + + + + LV K K +V Sbjct: 169 LIAFSGVATVYWVSTVGTLLTV-FLLMGLPALKPQHAANGESPLRQLVQGFKFVFKNKVV 227 Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218 G+ I I ++ + + I ++H ++ + +TL L GW+ Sbjct: 228 GSTILIGTLLSFSSAIRIIFPQMADEIFHGGAFELGLMYSAVPLGSTLGALLSGWTTRLR 287 Query: 219 YSKLKM 224 L M Sbjct: 288 RPGLVM 293 >gi|56461575|ref|YP_156856.1| DNA adenine methylase [Idiomarina loihiensis L2TR] gi|56180585|gb|AAV83307.1| DNA adenine methylase [Idiomarina loihiensis L2TR] Length = 290 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Query: 296 QNLIAKKMRKIAYEHNIPIF---EEPSLARSLFKQVPI 330 Q+ +A++ ++A + +IP+ + L R+L+K I Sbjct: 206 QDELARRAVQVAKKRHIPVLISNHDTDLTRALYKHADI 243 >gi|307942346|ref|ZP_07657697.1| integral membrane protein [Roseibium sp. TrichSKD4] gi|307774632|gb|EFO33842.1| integral membrane protein [Roseibium sp. TrichSKD4] Length = 504 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 10/201 (4%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 + S +LA + Y F + + V AT ++ L+++A Sbjct: 55 DPSAALILLAGVYYGAIFGGSTSSILINAPGVASTVATSFDGYPLTRQGKAGKALTVAAI 114 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 + G + ++ I + ++ + +L + + G+ I + K+ Sbjct: 115 SSFVGGTVGAILLMIFAPMLASVALLFHSAEYFALM----VVGLSAIAAFAGTGQVGKAM 170 Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 + + L+G I+ F M F L F + + M L A +LD Sbjct: 171 L-MTLLGLIMATVGEGALFNMPRFTMGVMD--LQSGFGFITLAMAMFALPEAIFLILDPN 227 Query: 213 WSYH---QWYSKLKMSKQEIK 230 S L+++K+E K Sbjct: 228 RSKTGSSNEIKDLRITKEEAK 248 >gi|254294956|ref|YP_003060979.1| major facilitator superfamily MFS_1 [Hirschia baltica ATCC 49814] gi|254043487|gb|ACT60282.1| major facilitator superfamily MFS_1 [Hirschia baltica ATCC 49814] Length = 439 Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 15/186 (8%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S L S++ ++ L + V + + ++ + I L T + Sbjct: 106 SASIGLMSALWGLIVLRLIIGAAEAVVVPASYRWIRSNFDPNESGTAVGIYMLGTKFGPA 165 Query: 91 ASRLVIPGL-------LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 + L L+F++ GI L + + + P ++ S K+ I Sbjct: 166 FGAPIAAWLIVTMNWQLMFIVTGIAGLLWLIPWIFIVKNDMP--EQFSRTGNNKKKSPIP 223 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 +KS + L+ + I+ NYFT P ++ T++++ + Sbjct: 224 -----VKSILSSPLIWGTLVINFCYNYFTFFCMTWM-PSYLVEQRGLTLKEMGLYTFFSF 277 Query: 204 ATLTVL 209 A + ++ Sbjct: 278 AGIAIV 283 >gi|317490342|ref|ZP_07948827.1| Na+/H+ antiporter [Eggerthella sp. 1_3_56FAA] gi|316910556|gb|EFV32180.1| Na+/H+ antiporter [Eggerthella sp. 1_3_56FAA] Length = 667 Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 66/207 (31%), Gaps = 22/207 (10%) Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVLLASATQRKLEDISHIVFL 83 I+ + S++ F F G+ ++ + ++ LE+ + L Sbjct: 164 QFAIAAAVTGTFSLVGATANFFFAFLGGVLVGVALGLTGNFIVRRVRSWGLENTT-FHVL 222 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 LV L + + + I V++ + PS R+++ Sbjct: 223 FEVFVPFIVYLVANALGTSGIIAVVAAGILN--VVSPRAIGPSVSRMNIVSASV----WR 276 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 L + V +L+GT + + ++ + +L + +L + Sbjct: 277 VLTFALNGIV-FVLLGT-----------QLPRAMQRTWENVTIDNDALIGYILGITVLML 324 Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIK 230 A + + + +M+ E++ Sbjct: 325 AARFLWVLIMERVHRQRRGRMTLDELR 351 >gi|257792476|ref|YP_003183082.1| sodium/hydrogen exchanger [Eggerthella lenta DSM 2243] gi|325833576|ref|ZP_08166025.1| putative Na+/H+ antiporter [Eggerthella sp. HGA1] gi|257476373|gb|ACV56693.1| sodium/hydrogen exchanger [Eggerthella lenta DSM 2243] gi|325485500|gb|EGC87969.1| putative Na+/H+ antiporter [Eggerthella sp. HGA1] Length = 667 Score = 37.5 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 66/207 (31%), Gaps = 22/207 (10%) Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVLLASATQRKLEDISHIVFL 83 I+ + S++ F F G+ ++ + ++ LE+ + L Sbjct: 164 QFAIAAAVTGTFSLVGATANFFFAFLGGVLVGVALGLTGNFIVRRVRSWGLENTT-FHVL 222 Query: 84 LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143 LV L + + + I V++ + PS R+++ Sbjct: 223 FEVFVPFIVYLVANALGTSGIIAVVAAGILN--VVSPRAIGPSVSRMNIVSASV----WR 276 Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 L + V +L+GT + + ++ + +L + +L + Sbjct: 277 VLTFALNGIV-FVLLGT-----------QLPRAMQRTWENVTIDNDVLIGYILGITVLML 324 Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIK 230 A + + + +M+ E++ Sbjct: 325 AARFLWVLIMERVHRQRRGRMTLDELR 351 >gi|328722024|ref|XP_003247461.1| PREDICTED: hypothetical protein LOC100574766 [Acyrthosiphon pisum] Length = 168 Score = 37.5 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 172 TMLDFISANPHSILYHA-FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 ++ I +S +Y A TV ++ + L W Y++ + + + EI+ Sbjct: 46 ALVPLIYGPMYSAVYKATLKTVPGAFFLLGGALTAPAALIFLWMYNEHKKERREKEAEIR 105 Query: 231 DEIKQSY 237 DE K+S Sbjct: 106 DEEKKSE 112 >gi|325846944|ref|ZP_08169801.1| branched-chain amino acid ABC transporter, permease protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481186|gb|EGC84230.1| branched-chain amino acid ABC transporter, permease protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 311 Score = 37.5 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 11/178 (6%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 E + L + +P + + L + + ++ ++++ Sbjct: 42 EGMMTIGALVAATVGYYVGNPWLGFLAGGLAGMFFGLIHAIVSVTFAGDQTISGIAIN-- 99 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 + PGL LF+ Q + N + F + +G+K I+S Sbjct: 100 -TLAPGLALFLARLFFDGATQTPSIPLENKIPRLFDGLIKNQGLKNIFSQYA-------T 151 Query: 153 VKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 V + L+ I + + L + + + +VRK+ + ++F + L Sbjct: 152 VYLALISVILLYVFLYKTKWGLRLIAVGEHPKAAETLDISVRKIRYLAVMFSGFMGGL 209 >gi|291403995|ref|XP_002718334.1| PREDICTED: transient receptor potential cation channel, subfamily M, member 6-like [Oryctolagus cuniculus] Length = 1653 Score = 37.5 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVALVVEGGPNVVSVVLEYLREDPPVPVVVCDGS 328 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 329 G-RASDILSFAHKY 341 >gi|221127332|ref|XP_002165091.1| PREDICTED: similar to GF24139, partial [Hydra magnipapillata] Length = 539 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 13/189 (6%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 A +L L+ + +YS++ D + + + I +L+ L + Sbjct: 345 SAGAICGLLGSLLVSIIPIPRMLYSMSQDGLLFNFFSIVHPKSQVPVISTILSGLFIGIL 404 Query: 93 RLVIPGLLLFMMFGIG-----SYLIQRIPVLNLNHVKP---SFKRVSLREGIKRIYSINN 144 +I L M IG S ++ + +L + P +++ SL E K S N Sbjct: 405 AAIIDLAELVEMMSIGTLLAYSIVVICVLILRYDLTPPPNNNYESESLIENEKNK-SAKN 463 Query: 145 LVNFMKSFVKIILVGTIITISL----TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 I LV T+I + + +N + I P L+ + + + + Sbjct: 464 CFEAGCIIFIIALVATVIYLFVKDTTKDNLAFKVPMIPWIPVVALFFNVYLMSMLSQITW 523 Query: 201 LFIATLTVL 209 + + Sbjct: 524 IRFGIWLFI 532 >gi|218530989|ref|YP_002421805.1| ABC transporter [Methylobacterium chloromethanicum CM4] gi|218523292|gb|ACK83877.1| ABC transporter related [Methylobacterium chloromethanicum CM4] Length = 595 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 1/165 (0%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 ++ +L ++ + + A I + L T L + Sbjct: 33 LVTAITLATLADVMLPLYAGRLVDALAGAERQAALQAALPAFAIMTALSLATVLLRHVAW 92 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN-FMKSF 152 ++ L L M I S R+ + +F ++R+ + +++++ L + + S Sbjct: 93 SLVVPLTLGTMSDIASQSFARVQRFSTEWHANTFSGSTVRKISRGMWALDGLNDVLLLSI 152 Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197 + ++V T+ L ++ M I + + A F +V+ Sbjct: 153 LPSVVVLAGTTVVLGLHWPAMGAVIGLGTLAYVGTAVFLATRVIA 197 >gi|325962988|ref|YP_004240894.1| nitrate/nitrite transporter [Arthrobacter phenanthrenivorans Sphe3] gi|323469075|gb|ADX72760.1| nitrate/nitrite transporter [Arthrobacter phenanthrenivorans Sphe3] Length = 448 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 17/174 (9%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 +A ++++A + P I S L +T L + L Sbjct: 248 DAGTVAALMALYVAAAMAVGPFIGRFVS--RHPLRRSTMVLLIAGATAGAWAAVLLTPGR 305 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN---FM 149 + L ++ +G + + R+ + +VN F+ Sbjct: 306 APLWLLAGLVVVLAVGGPGSMIGFDFA--------RTFNPA---HRMGTATGIVNVGGFI 354 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 + V I L+G ++ + + + +P I F + + +L Sbjct: 355 AALVAIFLIGLVLDVLFASGFSNGV-LYGLDPFRIAMSVQFLLLGLGAGAMLVC 407 >gi|198463605|ref|XP_001352881.2| GA20373 [Drosophila pseudoobscura pseudoobscura] gi|198151332|gb|EAL30382.2| GA20373 [Drosophila pseudoobscura pseudoobscura] Length = 1379 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 63/177 (35%), Gaps = 21/177 (11%) Query: 81 VFLLTHLSLSASRLVIPG-LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139 +++ L ++ PG + L M+ + + I L + P + +K+ Sbjct: 887 MYVWYQGMLMIGTVLGPGTIFLMMVGALVAVFTINIWTAFLWNFFPILFFILSCVYLKQK 946 Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199 + + L+ F+ S + +++ ++ + + A+ +L T+ ++ Sbjct: 947 FQL--LIAFVISALYCLVMMAVLIGIIVQMMEDGP-LAPASLFFLLVAVQITIAGLMHPQ 1003 Query: 200 LLFIATLTVLDIGWSYHQWYSKLKM-------------SKQE--IKDEIKQSYGNPI 241 + V+ + L M +++ +KD+ K S G+P Sbjct: 1004 EFWALLCGVIYYITIPSMYM--LLMIFSVFNMNDVSWGTREAPVLKDDDKDSPGDPE 1058 >gi|325989805|ref|YP_004249504.1| hypothetical protein Msui04570 [Mycoplasma suis KI3806] gi|323574890|emb|CBZ40550.1| hypothetical protein Msui04570 [Mycoplasma suis] Length = 165 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 8/165 (4%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++ +++ D S ++L T L + L IP + L +++ + S+ P ++ + Sbjct: 1 MIFFNNGQQMIDNSGDIYLATRLLMMFYWLTIPSIALILIWSLYSF-----PKMDWSKNF 55 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PSF R I+ L + + IL+ +L N Sbjct: 56 PSFSRFFPYLKNLSIFGWVILGTLI--LINTILLVFYAIDTLALNNVDKYAVYWKYKVQE 113 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 F V ++ IL +I + + W + + SKL +S +++ Sbjct: 114 RPVLSFFVVTIMGFILYWILAIVCYNTFWEKY-FNSKLNLSLKDL 157 >gi|170690340|ref|ZP_02881507.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis C4D1M] gi|170144775|gb|EDT12936.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis C4D1M] Length = 635 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 69/196 (35%), Gaps = 23/196 (11%) Query: 28 APISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLASATQRKLEDISHIVFLLTH 86 P R+AS+ + +Y S++ L+ L H L Sbjct: 83 VPRHRKASVLIGGFVGNLAANLLGGESLYVSLSFTACGLIEVCAAALLLPQVHSANELIV 142 Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRI------------PVLNLNHVKPSFKR--VSL 132 + ++I G+ ++ G+ + L+ V++ + F +++ Sbjct: 143 PRILFRFVIIAGIFAPLISGLAAVLLLEGVFTTHPFSSFSNWVISDSLGILIFTPVTINM 202 Query: 133 REGIKRIY---SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189 G R + KS ++LVG + + +N ++L ++ + +HA Sbjct: 203 ISGEWRSFLQPGSRA-----KSVALLLLVGCVTALIFGQNTHSLLYWVLPPLALLAFHAE 257 Query: 190 FTVRKVLIMILLFIAT 205 + + I+I + IA Sbjct: 258 LSTVLLGILICISIAV 273 >gi|297625376|ref|YP_003687139.1| Cytochrome d ubiquinol oxidase, subunit II [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921141|emb|CBL55688.1| Cytochrome d ubiquinol oxidase, subunit II [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 377 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 76/210 (36%), Gaps = 25/210 (11%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96 +L ++++L F + G + + + T + + ++ + + + + A+ + Sbjct: 183 FGLLGGVLFILLFCTHGSMFLALKTYGSIHDKTVKFVHTLAPVTVAVLLIFVLAANIFYG 242 Query: 97 ----PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 P L + + + + VL L + +R G I + + Sbjct: 243 TSKNPYLGSLSTVLMWAAGLLSVVVLGLAALAQRAER----NGWAFIGTGAS-------- 290 Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 I+L+ +I + + + +S + + + K++ F+ + + G Sbjct: 291 --ILLMLAMIFVKMYGTLGFISADMSNPLNMVTASSSPLTLKLMTWFACFLVPVVLAYQG 348 Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242 WSY + +L +K E+ + P + Sbjct: 349 WSYWVFSKRLS-TK-----EMPEHEHEPNV 372 >gi|299069990|emb|CBJ41276.1| putative transcription regulator [Ralstonia solanacearum CMR15] Length = 328 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%) Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFE--------EPSLARSLFKQ-VPINSAIPPV 337 P + G + +A + ++A H I + E + L+R L+ + I + Sbjct: 226 PRPTAIFAGNDDMAAGVLRVAQAHGIRVPEDLSIAGYDDTPLSRQLWPSLTTVRQPIQDM 285 Query: 338 FYKAVAQLIY 347 Y AV QLI Sbjct: 286 AYAAVEQLIA 295 >gi|119196979|ref|XP_001249093.1| hypothetical protein CIMG_02864 [Coccidioides immitis RS] gi|303322072|ref|XP_003071029.1| Endomembrane family protein [Coccidioides posadasii C735 delta SOWgp] gi|240110728|gb|EER28884.1| Endomembrane family protein [Coccidioides posadasii C735 delta SOWgp] gi|320032767|gb|EFW14718.1| endosomal integral membrane protein [Coccidioides posadasii str. Silveira] Length = 652 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 19/199 (9%), Positives = 51/199 (25%), Gaps = 27/199 (13%) Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL--------EDISHIVFLLTHLSLSASR 93 LI F S G Y A ++ + + + F L + Sbjct: 391 VILILYTFLGSIGGYVSARAYKSFGGEAWKQLIIATPLVLPAIVFSVFFFLNFILWIKGA 450 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS-------------FKRVSLREGIKRIY 140 ++ + ++I + + + +++ G R+ Sbjct: 451 SGAVPFTTMVVIVLIWFIISVPLSVAGSWIGFKQPALEGPTKTNQIPRQIPPAVGSLRLI 510 Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 + + + + + + + ++ L + + + IL Sbjct: 511 P----STLIAGLLPFAAIFVELYFIMNSLWTGKIYYMFGFL--FLCYGLMIMMSAMTTIL 564 Query: 201 LFIATLTVLDIGWSYHQWY 219 L L D W + + Sbjct: 565 LVYFLLCAEDYRWQWRSFI 583 >gi|226942575|ref|YP_002797648.1| glucose/galactose transporter protein [Azotobacter vinelandii DJ] gi|226717502|gb|ACO76673.1| glucose/galactose transporter protein [Azotobacter vinelandii DJ] Length = 429 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 11/189 (5%) Query: 28 APISREASLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLASATQRKLEDISHIVFLLTH 86 P ++ S A L+ FFF+ + S+ L + + ++ L Sbjct: 46 VPKLKDLFSLSYTEAMLVQSAFFFAYFVASIPAGLLISRIGYMKAAVVGLLTMAAGCLMF 105 Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 + + S L L + +G +Q + L+ + P S + S+ V Sbjct: 106 IPATLSTLFPAFLGALFILAVGVTTVQVVANPLLSLLGPGSTAHSRLTLGQGFNSLGTTV 165 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 +G I+ + A + L H + + I L I + Sbjct: 166 --------APYIGAILILGALNEVDP-STLSGAELSAFLAHEASVISNTYVGIALIICLI 216 Query: 207 TVLDIGWSY 215 + + Sbjct: 217 AAI-VWLQR 224 >gi|315576293|gb|EFU88484.1| membrane family protein [Enterococcus faecalis TX0309B] gi|315582785|gb|EFU94976.1| membrane family protein [Enterococcus faecalis TX0309A] Length = 542 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + + +E + L +L++ A + ++L ++ I LI P++ L Sbjct: 102 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 161 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 162 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 207 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 208 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 248 >gi|297583801|ref|YP_003699581.1| TRAP transporter, 4TM/12TM fusion protein [Bacillus selenitireducens MLS10] gi|297142258|gb|ADH99015.1| TRAP transporter, 4TM/12TM fusion protein [Bacillus selenitireducens MLS10] Length = 652 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 19/214 (8%) Query: 15 SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL 74 + K+I AL EG + + A +I + F+ + L L L Sbjct: 411 TPKRIIAALEEG--ARVALPVIAACASAGIIVGIVVFTGLGGKIAGGLLGLAGDNLFLLL 468 Query: 75 EDISHIVFLLTHLS------LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128 LL + + + P L+ F + I ++ + + P Sbjct: 469 FFTMIACILLGMGLPTTANYVVTASMAAPALIEFGVPEISAHFFVFYFGIVADITPPVCL 528 Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188 GI R + V + K+ + G II Y L + A+ ++++ Sbjct: 529 AAYAGAGIARANPMKAGV----TAFKLAIAGFIIPYVFV--YNPALLLVDADVMTVIFLV 582 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 ++ + I+ + + +S+ + L Sbjct: 583 LTSLLGM-----AAISAVMMNYFIYSFKWYERLL 611 >gi|17549856|ref|NP_523196.1| transcription regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17432112|emb|CAD18788.1| probable transcription regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 355 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%) Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFE--------EPSLARSLFKQ-VPINSAIPPV 337 P + G + +A + ++A H I + E + L+R L+ + I + Sbjct: 253 PRPTAIFAGNDDMAAGVLRVAQAHGIRVPEELSIAGYDDTPLSRQLWPSLTTVRQPIQDM 312 Query: 338 FYKAVAQLIY 347 Y AV QLI Sbjct: 313 AYAAVEQLIA 322 >gi|332686321|ref|YP_004456095.1| hypothetical protein MPTP_0822 [Melissococcus plutonius ATCC 35311] gi|332370330|dbj|BAK21286.1| hypothetical protein MPTP_0822 [Melissococcus plutonius ATCC 35311] Length = 462 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 21/192 (10%), Positives = 67/192 (34%), Gaps = 4/192 (2%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 + ++F + ++ + + + ++ + + Sbjct: 69 DYNIFLLLFIGVMCVTTIINRQYGLFANIKLIMNEAIYFFVIYRFGQTQTNAMLTIQRFV 128 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 +++I L+F+ +G +L Q L + F + L R++ + + NF + Sbjct: 129 KILIGLWLIFVTISLGMFLTQTKYSFTLKN---RFHPLRLGFLENRLFGVFSDPNFASTI 185 Query: 153 VKIILVGTIITISLTENYFTMLDFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDI 211 I+++ ++ + + ++ F++ N +L+ R +I + + +A + Sbjct: 186 SLIVIIMSLYYLFAIKIKISIKVFLAINVFFQLLFILLSGSRTGMIELTIGLAFFLFIYC 245 Query: 212 GWSYHQWYSKLK 223 + K Sbjct: 246 YTTNLMHIKNSK 257 >gi|281208928|gb|EFA83103.1| presenilin family protein [Polysphondylium pallidum PN500] Length = 2764 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK-------RIYSINNL 145 ++V + +F + + +I+ I V + P R+ + G K + +N L Sbjct: 151 QMVSIAIPVFFTMVVVTAVIRAISVPDNQSSPPPANRIDIPAGFKYDTDPNIQQVFLNTL 210 Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 +N + F+ ++++ T+I + L + F + SIL F ++++ Sbjct: 211 INSL-IFLGVVVLSTVIMVILYKFKFMKALYGWLMATSILLLGVFGGFLFILILTYVNIA 269 Query: 206 LTVLDIGWSYHQW 218 L L + + Sbjct: 270 LDYLTFVFVVWNF 282 >gi|281412763|ref|YP_003346842.1| metal dependent phosphohydrolase [Thermotoga naphthophila RKU-10] gi|281373866|gb|ADA67428.1| metal dependent phosphohydrolase [Thermotoga naphthophila RKU-10] Length = 428 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 15/195 (7%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97 SILA +L+F FS + VL+ T + F T + S + I Sbjct: 18 LSILAFYFFLIFVFSDYTDNWHGFGFVLILFLTSVFFDIARTKTFEFTGGKVETSAVFIV 77 Query: 98 GLLLFMMF-GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV--- 153 + + + + L+ + +K F +S + F+ S + Sbjct: 78 NIFTAALLNPLEASLVAASSAITFKIIKLFFGERYPISRYVFNFSQIAVSTFLTSLLFHR 137 Query: 154 ----------KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 IL+ T++ L N F I A + + + L I Sbjct: 138 LSGTNTFQNILAILLSTVVY-FLINNVFVFFGVYILTKGDIRETASKVLSGPVTSMALMI 196 Query: 204 ATLTVLDIGWSYHQW 218 + V+ I + Y + Sbjct: 197 PVIAVIYILYQYIGF 211 >gi|292488730|ref|YP_003531617.1| hypothetical protein EAMY_2259 [Erwinia amylovora CFBP1430] gi|292899886|ref|YP_003539255.1| signal transduction protein [Erwinia amylovora ATCC 49946] gi|291199734|emb|CBJ46854.1| putative signal transduction protein [Erwinia amylovora ATCC 49946] gi|291554164|emb|CBA21371.1| Uncharacterized protein yegE [Erwinia amylovora CFBP1430] Length = 848 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 23/198 (11%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 R L + + ACL ++L + + V + L L+T + Sbjct: 13 RSLCLNALLFACLSFVLTLYCLELIKVIGQISPLWF------------PTALMTVVVFRH 60 Query: 92 SRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPSFKRVSLREG---IKRIYSINNLVN 147 +P LL + G+ + ++ L+ + V P + G ++R+ N+ +N Sbjct: 61 PTRDLPYLLSGCVIGLTCANVLFSGFSLS-SLVFPLVNLLQALAGGMLLRRLLDRNSPLN 119 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 + S++K+++V I L L + + + + L Sbjct: 120 SLLSWLKMVVVAGIFISVLGGVMAYWL------LQPAANSTLHFLTTWTLSEAIGMLALG 173 Query: 208 VLDIGWSYHQWYSKLKMS 225 + + W L+ + Sbjct: 174 PVGLLWQTDYVRRHLRQT 191 >gi|212696640|ref|ZP_03304768.1| hypothetical protein ANHYDRO_01181 [Anaerococcus hydrogenalis DSM 7454] gi|212676371|gb|EEB35978.1| hypothetical protein ANHYDRO_01181 [Anaerococcus hydrogenalis DSM 7454] Length = 311 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 11/178 (6%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 E + L + +P + + L + + ++ ++++ Sbjct: 42 EGMMTIGALVAATVGYYVGNPWLGFLAGGLAGMFFGLIHAIVSVTFAGDQTISGIAIN-- 99 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 + PGL LF+ Q + N + F + +G+K I+S Sbjct: 100 -TLAPGLALFLARLFFDGATQTPSIPLENKIPRLFDGLIKNQGLKNIFSQYA-------T 151 Query: 153 VKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 V + L+ I + + L + + + +VRK+ + ++F + L Sbjct: 152 VYLALISVILLYVFLYKTKWGLRLIAVGEHPKAAETLDISVRKIRYLAVMFSGFMGGL 209 >gi|47092451|ref|ZP_00230241.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes str. 4b H7858] gi|47019228|gb|EAL09971.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes str. 4b H7858] Length = 602 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 FS + A +LL L ++ R+L + F+L + L Sbjct: 124 GTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 183 Query: 95 VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149 ++ + ++ + ++ + + P +++L I+S+N LV Sbjct: 184 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 237 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + IL F + + IL F Sbjct: 238 -----FILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 285 >gi|320542222|ref|NP_001188648.1| paralytic, isoform BA [Drosophila melanogaster] gi|318069438|gb|ADV37730.1| paralytic, isoform BA [Drosophila melanogaster] Length = 2132 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1306 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1365 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1366 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1424 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1425 VQAIPSIFNVLLVCLIFWLIF 1445 >gi|320542208|ref|NP_001188641.1| paralytic, isoform AT [Drosophila melanogaster] gi|318069431|gb|ADV37723.1| paralytic, isoform AT [Drosophila melanogaster] Length = 2056 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1230 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1289 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1290 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1348 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1349 VQAIPSIFNVLLVCLIFWLIF 1369 >gi|320542206|ref|NP_001188640.1| paralytic, isoform AS [Drosophila melanogaster] gi|318069430|gb|ADV37722.1| paralytic, isoform AS [Drosophila melanogaster] Length = 2067 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1241 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1300 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1301 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1359 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1360 VQAIPSIFNVLLVCLIFWLIF 1380 >gi|320542188|ref|NP_001188631.1| paralytic, isoform AJ [Drosophila melanogaster] gi|318069421|gb|ADV37713.1| paralytic, isoform AJ [Drosophila melanogaster] Length = 2132 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1306 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1365 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1366 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1424 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1425 VQAIPSIFNVLLVCLIFWLIF 1445 >gi|229102993|ref|ZP_04233682.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28] gi|228680408|gb|EEL34596.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28] Length = 801 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 28/214 (13%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+FS +++ I++ F ++A ++ ++F ++ S Sbjct: 10 LSIFSLLVSAAIFIQVFLVHSRRYFEKFYGGIIA---------VTLMLFSFPYMGFSYDL 60 Query: 94 LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 V+P +L F+ FG + S +I RI + P + S++ L Sbjct: 61 RVVPLILSFIYFGRIAGWITLISIIIMRIFFIGGYWEPPVIAYL----------SMSVLF 110 Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 K++ K + + S+ ++ + +LI + L A Sbjct: 111 FTFKTYFKNLHPFKSASLYFSIFVGIKWLVGVFFNTTLLYSGGLLYIALGLLIGLFLMEA 170 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + +LK SKQE+ D + + G Sbjct: 171 YQRLYYLTQDLSKMNRELKKSKQELTDTVHELQG 204 >gi|163788499|ref|ZP_02182945.1| hypothetical protein FBALC1_08958 [Flavobacteriales bacterium ALC-1] gi|159876819|gb|EDP70877.1| hypothetical protein FBALC1_08958 [Flavobacteriales bacterium ALC-1] Length = 1103 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 12/139 (8%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 L LLF FS + L L+ +L D + V++ T L ++ + Sbjct: 104 FLGSFTVLLFVFSGIPLGMI--LGELMPWTAADELLDFNGFVYIKTFLLVTIPTVFFGAA 161 Query: 100 LLFMMFGIGSYLI----QRIPVLN----LNHVKPSF--KRVSLREGIKRIYSINNLVNFM 149 L F+ + L+ Q I + + F + + + Sbjct: 162 LFFVTGALSRNLVVVYTQGIFLFVVFMLTKAITNDFWQAVLDPFSLTTTTFITKSWTALE 221 Query: 150 KSFVKIILVGTIITISLTE 168 KS ++ +G ++ L Sbjct: 222 KSTQELPFIGALLYNKLFW 240 >gi|403444|gb|AAB59192.1| sodium channel alpha subunit [Drosophila melanogaster] Length = 2077 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1251 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1310 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1311 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1369 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1370 VQAIPSIFNVLLVCLIFWLIF 1390 >gi|320542196|ref|NP_001188635.1| paralytic, isoform AN [Drosophila melanogaster] gi|318069425|gb|ADV37717.1| paralytic, isoform AN [Drosophila melanogaster] Length = 2143 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1317 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1376 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1377 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1435 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1436 VQAIPSIFNVLLVCLIFWLIF 1456 >gi|228470577|ref|ZP_04055434.1| ABC-type transporter permease protein [Porphyromonas uenonis 60-3] gi|228307704|gb|EEK16680.1| ABC-type transporter permease protein [Porphyromonas uenonis 60-3] Length = 447 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 73/196 (37%), Gaps = 10/196 (5%) Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84 +G S + + +L F S V S + + + + ++ Sbjct: 174 KGEEAKSSGSLAGVIGMVLSGIILAFMSNYSGQVMSGVLEEKKNRIMEVIVSTVRPIEMM 233 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE--GIKRIYSI 142 + + + + ++++FG +++ + + + + ++ + G+ S+ Sbjct: 234 IAKMVGVFLVGLTQVAIWLIFGGIIFVVGSLVAVGGVYDLSALSQLDPAQMGGLAGGMSM 293 Query: 143 NNLVNFMKSF--------VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194 +++ S V++I++ + I Y ++ I ++ S + F + Sbjct: 294 DSVTEMQSSLEVLQSINFVQLIIMLLVYFIGGYLLYASLFAAIGSSVSSDEDASQFMMPF 353 Query: 195 VLIMILLFIATLTVLD 210 VL+M+L F + +D Sbjct: 354 VLVMMLGFYIAMGSMD 369 >gi|168179699|ref|ZP_02614363.1| PTS system, fructose family, IIBC component [Clostridium botulinum NCTC 2916] gi|182669439|gb|EDT81415.1| PTS system, fructose family, IIBC component [Clostridium botulinum NCTC 2916] Length = 465 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSTQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 PG++ + G+ + + ++ FK++ G+ + + +K Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S + ++G +IT L + ++ ++ + I++ + I ++ D Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313 Query: 211 I 211 Sbjct: 314 F 314 >gi|116007172|ref|NP_001036281.1| paralytic, isoform C [Drosophila melanogaster] gi|113193613|gb|ABI30986.1| paralytic, isoform C [Drosophila melanogaster] Length = 2131 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444 >gi|157120488|ref|XP_001659662.1| adenylate cyclase type [Aedes aegypti] gi|108874930|gb|EAT39155.1| adenylate cyclase type [Aedes aegypti] Length = 1982 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 30/188 (15%) Query: 58 VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117 ++S L +LLA + D+S L RL I + +++ +G + Sbjct: 739 ISSILMLLLAVRLKWIFWDLSQSFSL---------RLAITVFTIVLLYSVGQVNVFTCLS 789 Query: 118 LNLNHVKPSFKRVSLRE--GIKRIYSINNLVNFM------------KSFVKIILVGTIIT 163 + + K V + + + S++ +F+ K+F+ I+L+G + Sbjct: 790 DHPCTTNFTTKAVDPFQHCALPQYISLSAAFSFLTVSIFLRLPIMVKTFL-IMLMGIMYC 848 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA------TLTVLDIGWSYHQ 217 + + ++ + D S + ++ +++I ++ +A LD W Sbjct: 849 LFIELSHTNIFDCYDQRVESAIPLHTISLARIIIFMIAILAHGRQVEWTARLDFLWQLQA 908 Query: 218 WYSKLKMS 225 K +MS Sbjct: 909 SQEKKEMS 916 >gi|194893768|ref|XP_001977935.1| GG19319 [Drosophila erecta] gi|190649584|gb|EDV46862.1| GG19319 [Drosophila erecta] Length = 2130 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444 >gi|30582781|gb|AAP35617.1| tubulin, beta, 4 [Homo sapiens] gi|61362358|gb|AAX42206.1| tubulin beta 4 [synthetic construct] gi|61362363|gb|AAX42207.1| tubulin beta 4 [synthetic construct] gi|119587079|gb|EAW66675.1| hCG2042771 [Homo sapiens] Length = 797 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS---- 88 + SS+L+ L +L S+ L R ++ I S Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFI 180 Query: 89 ------LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 LV+ L + ++ + + + + KR + + + Sbjct: 181 AYYDHVAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312 >gi|24642537|ref|NP_523371.2| paralytic, isoform A [Drosophila melanogaster] gi|150421666|sp|P35500|SCNA_DROME RecName: Full=Sodium channel protein para; AltName: Full=Protein paralytic; AltName: Full=Sodium channel 1; Short=DmNav1 gi|22832381|gb|AAF48617.2| paralytic, isoform A [Drosophila melanogaster] Length = 2131 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444 >gi|320542194|ref|NP_001188634.1| paralytic, isoform AM [Drosophila melanogaster] gi|318069424|gb|ADV37716.1| paralytic, isoform AM [Drosophila melanogaster] Length = 2083 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1257 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1316 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1317 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1375 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1376 VQAIPSIFNVLLVCLIFWLIF 1396 >gi|194768088|ref|XP_001966146.1| GF19518 [Drosophila ananassae] gi|190623031|gb|EDV38555.1| GF19518 [Drosophila ananassae] Length = 2136 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444 >gi|225154882|ref|ZP_03723380.1| cell cycle protein [Opitutaceae bacterium TAV2] gi|224804412|gb|EEG22637.1| cell cycle protein [Opitutaceae bacterium TAV2] Length = 403 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 6/191 (3%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 + S + FS ++ L L A A + F + L + Sbjct: 21 ILLSAIGVAFIYSAQFSTSLHDWKKQLVWLAAGAVTYTAVSLIDYRFWMNIAHLFYIACM 80 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKP----SFKRVSLREGIKRIYSINNLVNFMKS 151 IP L++ + G + QR +P + + I I L +++ Sbjct: 81 IP-LVIVLFAGEERFGAQRWLDFGFFAFQPSETAKAGTLLITASILARSQIGTLRESLRT 139 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 K+ L + + + + I P + M +L + V + Sbjct: 140 LGKLALAVGLPIFLILQQ-PDLKSAIVLPPMVFSMLYIAQLSTRFFMAVLGAFAVVVGIV 198 Query: 212 GWSYHQWYSKL 222 W H + + Sbjct: 199 AWDAHGYMKFM 209 >gi|403447|gb|AAB59195.1| sodium channel alpha subunit [Drosophila melanogaster] Length = 2131 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1364 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444 >gi|12852708|dbj|BAB29509.1| unnamed protein product [Mus musculus] Length = 372 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|325571081|ref|ZP_08146653.1| malate permease [Enterococcus casseliflavus ATCC 12755] gi|325156166|gb|EGC68352.1| malate permease [Enterococcus casseliflavus ATCC 12755] Length = 318 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 I+ L ++ +F+ ++ + + A + I L +P Sbjct: 73 MIIPLLSMMITYFAGYLWRRFAQVEAKHQGAFSAMFTFSNTIFIGLPINLAIFGEKAVPY 132 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSF--KRVS--LREGIKRIYSINNLVNFMKSFVK 154 +LL+ + + + L I + L P F R+S +K+I+S Sbjct: 133 VLLYYI--VNTTLFWTIGIFELAKDNPDFGEARISFHPLVMLKKIFSP------------ 178 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214 L+G II + + + S + + + + +FI + V Sbjct: 179 -ALIGFIIGL--------IWMLFTLPLPSFVDGLGSYLADLTTPLSMFIIGIIV------ 223 Query: 215 YHQWYSKLKMSKQ 227 Y L+M+K Sbjct: 224 YFGGLKNLRMTKD 236 >gi|320542184|ref|NP_001188629.1| paralytic, isoform AH [Drosophila melanogaster] gi|318069419|gb|ADV37711.1| paralytic, isoform AH [Drosophila melanogaster] Length = 2107 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1281 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1340 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1341 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1399 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1400 VQAIPSIFNVLLVCLIFWLIF 1420 >gi|170760976|ref|YP_001787382.1| PTS system, fructose family, IIBC component [Clostridium botulinum A3 str. Loch Maree] gi|169407965|gb|ACA56376.1| PTS system, fructose family, IIBC component [Clostridium botulinum A3 str. Loch Maree] Length = 465 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 PG++ + G+ + + ++ FK++ G+ + + +K Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S + ++G +IT L + ++ ++ + I++ + I ++ D Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313 Query: 211 I 211 Sbjct: 314 F 314 >gi|320542158|ref|NP_001188616.1| paralytic, isoform U [Drosophila melanogaster] gi|318069406|gb|ADV37698.1| paralytic, isoform U [Drosophila melanogaster] Length = 2118 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1292 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1351 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1352 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1410 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1411 VQAIPSIFNVLLVCLIFWLIF 1431 >gi|312172882|emb|CBX81138.1| Uncharacterized protein yegE [Erwinia amylovora ATCC BAA-2158] Length = 734 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 23/198 (11%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 R L + + ACL ++L + + V + L L+T + Sbjct: 13 RSLCLNALLFACLSFVLTLYCLELIKVIGQISPLWF------------PTALMTVVVFRH 60 Query: 92 SRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPSFKRVSLREG---IKRIYSINNLVN 147 +P LL + G+ + ++ L+ + V P + G ++R+ N+ +N Sbjct: 61 PTRDLPYLLSGCVIGLTCANVLFSGFSLS-SLVFPLVNLLQALAGGMLLRRLLDRNSPLN 119 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 + S++K+++V I L L + + + + L Sbjct: 120 SLLSWLKMVVVAGIFISVLGGVMAYWL------LQPAANSTLHFLTTWTLSEAIGMLALG 173 Query: 208 VLDIGWSYHQWYSKLKMS 225 + + W L+ + Sbjct: 174 PVGLLWQTDYVRRHLRQT 191 >gi|258569325|ref|XP_002543466.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237903736|gb|EEP78137.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 650 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 16/192 (8%), Positives = 50/192 (26%), Gaps = 15/192 (7%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 F + + + S G + + + F+L S + Sbjct: 395 TFLGFIGGYVASRTYKSFGGEAWKRLIIATPLILPAIIFSVFFFLNFILWVKGASGAVPF 454 Query: 96 IPGLLLFMMFGIGSYLIQRIPVL---------NLNHVKPSFKRVSLREGIKRIYSINNLV 146 +++ +++ + S + +++ G R+ Sbjct: 455 TTMIVIVLIWFVISVPLSVGGSWIGFKQPALEGPTKTNQIPRQIPPAVGSLRLVP----S 510 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 + F + + + + + ++ L + + + +LL L Sbjct: 511 TLIAGFFPFAAIFVELYFIMNSLWTGKIYYMFGFL--FLCYGLMIMMSAMTTVLLVYFLL 568 Query: 207 TVLDIGWSYHQW 218 D W + + Sbjct: 569 CAEDYRWQWRSF 580 >gi|320542192|ref|NP_001188633.1| paralytic, isoform AL [Drosophila melanogaster] gi|318069423|gb|ADV37715.1| paralytic, isoform AL [Drosophila melanogaster] Length = 2111 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1285 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1344 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1345 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1403 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1404 VQAIPSIFNVLLVCLIFWLIF 1424 >gi|260433570|ref|ZP_05787541.1| cytochrome oxidase assembly [Silicibacter lacuscaerulensis ITI-1157] gi|260417398|gb|EEX10657.1| cytochrome oxidase assembly [Silicibacter lacuscaerulensis ITI-1157] Length = 381 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 19/185 (10%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 ++ L +L F + I+ + + L+ + ++ S LL L Sbjct: 187 LATHLGLAFVILGFLAWYIFMLGREERDLMQARRAKEARLFSLSTGLLHFAFLQ------ 240 Query: 97 PGLLLFMMFGI-GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 L+ ++ GI P++ + P + + + LV F+ + Sbjct: 241 -ILIGALVAGIDAGRSFTDWPLIGGQVLPPDATALDPM--WRNFFESPGLVQFIHRC--V 295 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 V I + SA+P + AF + L + ++ V W Sbjct: 296 GYVLFAFGIFVWRR-----GSSSAHPQT--RFAFNAMFAALSLQVVVGILTVVYGAPWQI 348 Query: 216 HQWYS 220 ++ Sbjct: 349 AIFHQ 353 >gi|320542180|ref|NP_001188627.1| paralytic, isoform AF [Drosophila melanogaster] gi|318069417|gb|ADV37709.1| paralytic, isoform AF [Drosophila melanogaster] Length = 2110 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1284 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1343 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1344 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1402 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1403 VQAIPSIFNVLLVCLIFWLIF 1423 >gi|320542148|ref|NP_001188611.1| paralytic, isoform P [Drosophila melanogaster] gi|318069401|gb|ADV37693.1| paralytic, isoform P [Drosophila melanogaster] Length = 2121 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1295 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1354 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1355 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1413 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1414 VQAIPSIFNVLLVCLIFWLIF 1434 >gi|261207182|ref|ZP_05921871.1| predicted protein [Enterococcus faecium TC 6] gi|289565303|ref|ZP_06445754.1| predicted protein [Enterococcus faecium D344SRF] gi|294616133|ref|ZP_06695938.1| hypothetical protein EfmE1636_2202 [Enterococcus faecium E1636] gi|294619511|ref|ZP_06698951.1| hypothetical protein EfmE1679_2293 [Enterococcus faecium E1679] gi|260078810|gb|EEW66512.1| predicted protein [Enterococcus faecium TC 6] gi|289162959|gb|EFD10808.1| predicted protein [Enterococcus faecium D344SRF] gi|291591010|gb|EFF22714.1| hypothetical protein EfmE1636_2202 [Enterococcus faecium E1636] gi|291594242|gb|EFF25676.1| hypothetical protein EfmE1679_2293 [Enterococcus faecium E1679] Length = 595 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 12/196 (6%) Query: 33 EASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + S+F ++ I++ F F IY L + + + +F L L Sbjct: 100 DGSIFYFLVYFSIFVYSFLFLQSIYLSMPKLETFFTAQNTQAFSSRKYFLFFTVFLVLCW 159 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN------L 145 ++ ++ S + Q + + +++ P + L + + L Sbjct: 160 LPYLLALYPGVVLPDSLSSVAQSMGDVPISNHHPVLFTL-LVKLFVHDLPTDTINHGVFL 218 Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISAN----PHSILYHAFFTVRKVLIMILL 201 + ++ + + + L N IS +A + L I Sbjct: 219 FSIFQTLITASAISYSLCWLLKRNIHFFPVLISLCYFAFAPVFPIYALNMQKDTLFSIAC 278 Query: 202 FIATLTVLDIGWSYHQ 217 F+ +L V D + + Sbjct: 279 FLFSLAVFDFIFQREK 294 >gi|30584215|gb|AAP36356.1| Homo sapiens tubulin, beta, 4 [synthetic construct] gi|60653943|gb|AAX29664.1| tubulin beta 4 [synthetic construct] Length = 798 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS---- 88 + SS+L+ L +L S+ L R ++ I S Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFI 180 Query: 89 ------LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 LV+ L + ++ + + + + KR + + + Sbjct: 181 AYYDHVAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312 >gi|311245144|ref|XP_003121712.1| PREDICTED: transient receptor potential cation channel subfamily M member 1-like [Sus scrofa] Length = 1688 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 302 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 361 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 362 G-RASDILSFAHKY 374 >gi|320542166|ref|NP_001188620.1| paralytic, isoform Y [Drosophila melanogaster] gi|318069410|gb|ADV37702.1| paralytic, isoform Y [Drosophila melanogaster] Length = 2138 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1312 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1371 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1372 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1430 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1431 VQAIPSIFNVLLVCLIFWLIF 1451 >gi|254501320|ref|ZP_05113471.1| Integral membrane protein [Labrenzia alexandrii DFL-11] gi|222437391|gb|EEE44070.1| Integral membrane protein [Labrenzia alexandrii DFL-11] Length = 505 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 11/202 (5%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 + S +LA + Y F + + V AT ++ L+++A Sbjct: 55 DPSAALILLAGVYYGAIFGGSTSSILINAPGVASTVATSFDGYPLARQGKAGKALTVAAI 114 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 G + ++ I + + + +L + + G+ I + +K+ Sbjct: 115 SSFAGGSIGAVLLMIFAPALATVALLFHSAEYFALM----VVGLSAIAAFAGTGQVIKAL 170 Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 + + ++G I+ F M F L F + + M L A VLD Sbjct: 171 L-MTILGVIMATVGEGALFNMPRFTMGMMD--LQSGFGFITLAMAMFALPEALYLVLDPN 227 Query: 213 WSYHQW----YSKLKMSKQEIK 230 S + L+++K+E K Sbjct: 228 RSKTESGSNEIKDLRITKEEAK 249 >gi|195351464|ref|XP_002042254.1| GM13396 [Drosophila sechellia] gi|194124097|gb|EDW46140.1| GM13396 [Drosophila sechellia] Length = 1674 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1294 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1353 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1354 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1412 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1413 VQAIPSIFNVLLVCLIFWLIF 1433 >gi|7020006|dbj|BAA90958.1| unnamed protein product [Homo sapiens] Length = 575 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|320542128|ref|NP_001188601.1| paralytic, isoform F [Drosophila melanogaster] gi|318069391|gb|ADV37683.1| paralytic, isoform F [Drosophila melanogaster] Length = 2108 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1282 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1341 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1342 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1400 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1401 VQAIPSIFNVLLVCLIFWLIF 1421 >gi|311113604|ref|YP_003984826.1| amino acid transporter [Rothia dentocariosa ATCC 17931] gi|310945098|gb|ADP41392.1| amino acid transporter [Rothia dentocariosa ATCC 17931] Length = 528 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 25/191 (13%) Query: 25 EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84 EG S A++ + + L+YLL ++ TS + L ++ ++ +L Sbjct: 271 EGEHTTSGHAAVGTILTVVLLYLLISVGTLAFAGTSSEGLGLGNSDNQENIFAVLSGPVL 330 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144 L + S V+ L + S + + + P F +S + Sbjct: 331 GSLGIIMSFAVLISALASLQSTAVSPARTLLAMGYYKALGPKFASISPKYQSPS------ 384 Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 TI + + ++ ++ FIS + + T+ + +M+ L+ Sbjct: 385 -------------YATIASCLIATLFYVLMRFISTSV------LWDTISALSLMVCLYYG 425 Query: 205 TLTVLDIGWSY 215 + + Sbjct: 426 VTAFACVWYFR 436 >gi|57114170|ref|NP_001009152.1| melanocyte-stimulating hormone receptor [Pan troglodytes] gi|30420766|gb|AAP30960.1| melanocortin-1 receptor [Pan troglodytes] Length = 317 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLH---VLLASATQRKLEDISHIVFLLTHLSL 89 + SS+L+ L +L S+ L ++ +R + I L + L + Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAIAAIWVASVLFSTLFI 180 Query: 90 S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 + LV+ L + ++ + + + + KR + + + Sbjct: 181 AYCDHTAVLLCLVVFFLAVLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIXLCPEHPTCGCIFKNFNLFLALIIC 289 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312 >gi|403446|gb|AAB59194.1| sodium channel alpha subunit [Drosophila melanogaster] Length = 2121 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1295 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1354 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1355 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1413 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1414 VQAIPSIFNVLLVCLIFWLIF 1434 >gi|403445|gb|AAB59193.1| sodium channel alpha subunit [Drosophila melanogaster] Length = 2118 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1292 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1351 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1352 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1410 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1411 VQAIPSIFNVLLVCLIFWLIF 1431 >gi|329121659|ref|ZP_08250279.1| Na+/H+ antiporter [Dialister micraerophilus DSM 19965] gi|327468519|gb|EGF13999.1| Na+/H+ antiporter [Dialister micraerophilus DSM 19965] Length = 452 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 18/202 (8%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA------SATQRKLEDISHIVFLLTHL 87 L +L + + I +V + +++ +A + + I T + Sbjct: 74 VPLIIFMLIGTLVASLIAAGTIPTVVVYGYKIISAKYLPVTAFIICIAEGFTIGSSFTTI 133 Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ G + + + I N++ P +L I I +L N Sbjct: 134 STMGVVLIALGRISEIPDAYIAGAIVSGAFFA-NNMSPLADVPNLCSAIGEIPLSKHLRN 192 Query: 148 FMKSFVKIILVGTIITISLTEN-----------YFTMLDFISANPHSILYHAFFTVRKVL 196 KS + ++++ II + L + ++ F +P +++ + Sbjct: 193 LAKSTLPVLVISIIIYVILGGSANEVSGGIAETIQSLNKFFFVSPITLVPILLIFIASWR 252 Query: 197 IMILLFIATLTVLDIGWSYHQW 218 + + + ++ Y + Sbjct: 253 KLPAIASLLIGIISALIIYVFF 274 >gi|29377005|ref|NP_816159.1| hypothetical protein EF2516 [Enterococcus faecalis V583] gi|29344471|gb|AAO82229.1| membrane protein, putative [Enterococcus faecalis V583] Length = 681 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + + +E + L +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|320542170|ref|NP_001188622.1| paralytic, isoform AA [Drosophila melanogaster] gi|320542174|ref|NP_001188624.1| paralytic, isoform AC [Drosophila melanogaster] gi|318069412|gb|ADV37704.1| paralytic, isoform AA [Drosophila melanogaster] gi|318069414|gb|ADV37706.1| paralytic, isoform AC [Drosophila melanogaster] Length = 2084 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1258 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1317 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1318 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1376 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1377 VQAIPSIFNVLLVCLIFWLIF 1397 >gi|300117538|ref|ZP_07055325.1| branched-chain amino acid ABC transporter, permease [Bacillus cereus SJ1] gi|298725073|gb|EFI65728.1| branched-chain amino acid ABC transporter, permease [Bacillus cereus SJ1] Length = 286 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 71/184 (38%), Gaps = 11/184 (5%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + S++ L+ +L F G+++ + V L + T + ++ + + L R Sbjct: 21 LASGLSLIFGLMSVLNFAHGGLFAWGAFTGVWLFNMTGSYVLALTGAIAMGMFLGFILER 80 Query: 94 LVIPGL----LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 +I + + ++ +G L+ + P ++ L ++ ++ ++ + Sbjct: 81 FLIRPVYGNHVRQLLVTLGGMLVLSECIKVFWGPNPIGAKLPL--WLQGSFTFGGVI-LI 137 Query: 150 KSFVKIILVGTIITISLTENY----FTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 K + +IL+G II ++L ++ ++ V+ + + L A Sbjct: 138 KYRLFVILIGIIIYVALLVLLKKTKIGLMIRAGVMDKEMVQALGINVKAIFSFVFLLGAG 197 Query: 206 LTVL 209 + L Sbjct: 198 MAAL 201 >gi|210629781|ref|ZP_03296125.1| hypothetical protein COLSTE_00008 [Collinsella stercoris DSM 13279] gi|210160808|gb|EEA91779.1| hypothetical protein COLSTE_00008 [Collinsella stercoris DSM 13279] Length = 438 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 18/164 (10%) Query: 63 HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122 L T + + + + L L A V+P ++ F++ GIG ++ + V Sbjct: 10 QSLFVGVTLFSMFFGAGNLIIPPLLGLQAGEAVVPTMVGFLVTGIGLPVLGIVAVGLAGT 69 Query: 123 VKPSFKRVSLREGIKRIY----------------SINNLVNFMKSFVKIILVGTIITISL 166 ++ RV ++ + + + + + + + Sbjct: 70 IRDLAARVHPL--FASVFVAAVYLAIGPCLAIPRTSSTSFEMFEPLLPACVSLEVARLVF 127 Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 + +F + ++ +P ++ LI++L+F+ + D Sbjct: 128 SVAFFAVAYLLAMHPSALTRLLGRITGPALIVLLVFVIGAALFD 171 >gi|320542214|ref|NP_001188644.1| paralytic, isoform AW [Drosophila melanogaster] gi|318069434|gb|ADV37726.1| paralytic, isoform AW [Drosophila melanogaster] Length = 2062 Score = 37.1 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1236 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1295 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1296 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1354 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1355 VQAIPSIFNVLLVCLIFWLIF 1375 >gi|320542132|ref|NP_001188603.1| paralytic, isoform H [Drosophila melanogaster] gi|320542190|ref|NP_001188632.1| paralytic, isoform AK [Drosophila melanogaster] gi|318069393|gb|ADV37685.1| paralytic, isoform H [Drosophila melanogaster] gi|318069422|gb|ADV37714.1| paralytic, isoform AK [Drosophila melanogaster] Length = 2097 Score = 37.1 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1271 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1330 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1331 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1389 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1390 VQAIPSIFNVLLVCLIFWLIF 1410 >gi|255525494|ref|ZP_05392431.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium carboxidivorans P7] gi|255510859|gb|EET87162.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium carboxidivorans P7] Length = 297 Score = 37.1 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 15/191 (7%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 S+ + + ++ LF S ++++++ ++ S L I F LSL A+ Sbjct: 97 SISINFAKIYYFLFNLFVLSMIAVAISNNIILMWISLEATTLSTAFLIGFNRHKLSLEAA 156 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 I + ++ G+ ++ + PS K ++ +K +N KS Sbjct: 157 WKYIIICSIGIVLGLIGIIL-----FIYSSGDPSNKVLNWTYLVKNYSLLN------KSI 205 Query: 153 VKI----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 VK I VG L + + D S P I + + + ++L + Sbjct: 206 VKFGFCFIFVGIATKAGLAPMHTWLPDAHSEAPSPISAMMSGVLLNLALYVVLRFYIIVK 265 Query: 209 LDIGWSYHQWY 219 L G ++ Sbjct: 266 LISGLEKMKYL 276 >gi|213024081|ref|ZP_03338528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 50 Score = 37.1 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 5/17 (29%), Positives = 10/17 (58%) Query: 337 VFYKAVAQLIYKIYHKK 353 Y AVA+++ ++ K Sbjct: 2 QLYAAVAEVLAWVWQLK 18 >gi|92109463|ref|YP_571751.1| hypothetical protein Nham_4322 [Nitrobacter hamburgensis X14] gi|92109467|ref|YP_571755.1| hypothetical protein Nham_4328 [Nitrobacter hamburgensis X14] gi|91802545|gb|ABE64919.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] gi|91802549|gb|ABE64923.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 253 Score = 37.1 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 12/197 (6%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + +LA LL+ + L A++ + L L A Sbjct: 57 LATALQVLAAFTALLYAWRLLAVREVFIWARLQATSAWPLVWLAWLHGMSGEALVLVALA 116 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE-----------GIKRIYSI 142 + IP +L ++ S + + + P++ R++ +++ Sbjct: 117 VTIPAAVLMILGCSLSRRLGGAYLGLRGRIGPAWPRLTGVFVVALLAAMAAPPFPGFFAM 176 Query: 143 NNLVNFMKS-FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 ++ + + ++L ++ + F P ++ L ++L Sbjct: 177 LAVLQQISAGLAAVVLAVWLLWSWAAAVLWQHALFGDEWPRAVGTVDLSRSGTALWLMLA 236 Query: 202 FIATLTVLDIGWSYHQW 218 +A + GWS+ Sbjct: 237 AVAAVLGSIGGWSWWMH 253 >gi|288929947|ref|ZP_06423789.1| HAE1 efflux family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288328766|gb|EFC67355.1| HAE1 efflux family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 1068 Score = 37.1 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 39/234 (16%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK-LEDISHIVFLLTHLSLS 90 + + CL+++ S S L V+L+ + + + + Sbjct: 868 QSNTTALIFALCLVFVYLILSAQYESYLLPLSVILSLPFGLAGAFIFTQLFGHQNDIYMQ 927 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQ---RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 + +++ GLL I + ++ + + + + R+ Sbjct: 928 IALIMLIGLLAKNAILIVEFALERRRTGMAIKYSAILGAASRLRP--------------- 972 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 I++ G + I L F + N + L A V +LI ++L I + Sbjct: 973 -------ILMTGLAMVIGLLPMMFA--SGVGKNGNQTLGAA--AVGGMLIGMMLQIFVVP 1021 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261 L + + Y + K + E DE N +KN K AR K ++A Sbjct: 1022 ALFVIFQYL----QEKFTPLEFGDEE-----NREVKNELKQYARQMAIEKDVKA 1066 >gi|320542126|ref|NP_001188600.1| paralytic, isoform E [Drosophila melanogaster] gi|318069390|gb|ADV37682.1| paralytic, isoform E [Drosophila melanogaster] Length = 2108 Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1282 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1341 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1342 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1400 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1401 VQAIPSIFNVLLVCLIFWLIF 1421 >gi|167535051|ref|XP_001749200.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772353|gb|EDQ86006.1| predicted protein [Monosiga brevicollis MX1] Length = 551 Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 1/110 (0%) Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLASATQRKLEDISHIVFLLT 85 + P S+++S ++ + S + + + L L + F+ T Sbjct: 363 DVPHSKDSSTLVALFSVFNTCGRLLSGYLSDAFAHRISRLGFLVMGSLLMGAVQVYFMFT 422 Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135 + +V+ G+ F + L+ + + ++ G Sbjct: 423 SIDGMYGAVVLLGIAYGSFFCLVPALVSEAFGMATFGATFGLQGLAPAAG 472 >gi|320542172|ref|NP_001188623.1| paralytic, isoform AB [Drosophila melanogaster] gi|318069413|gb|ADV37705.1| paralytic, isoform AB [Drosophila melanogaster] Length = 2086 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1260 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1319 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1320 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1378 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1379 VQAIPSIFNVLLVCLIFWLIF 1399 >gi|311244743|ref|XP_003121563.1| PREDICTED: transient receptor potential cation channel subfamily M member 7 [Sus scrofa] Length = 1866 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 22/99 (22%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A L L KQ +P Sbjct: 319 GRAA------------------DLLAYLHKQTEEGGNLP 339 >gi|229496978|ref|ZP_04390683.1| cytochrome D ubiquinol oxidase, subunit II [Porphyromonas endodontalis ATCC 35406] gi|229316080|gb|EEN82008.1| cytochrome D ubiquinol oxidase, subunit II [Porphyromonas endodontalis ATCC 35406] Length = 387 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 30/191 (15%) Query: 43 CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 LI+++FF + + VT T ED + V L + + L +P +L+ Sbjct: 224 ALIFVVFFVAYVAFLVT----------TTGYTEDPTTGVISLENYKYLHNFLAMPIVLII 273 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162 + G+ L + L KP+F++ GI V + + ++ + + Sbjct: 274 FLIGVVLVLAG----IALTLFKPAFRK-----GI--------WVEGVGVVLSVLGLLLVA 316 Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 + T Y ++ D S+ + +T++ + I+ LL L + W + K Sbjct: 317 GWNNTAYYPSLFDMQSSLTLRNSSSSPYTLQAMSIVSLLIPFVLAYIFYAW---RSIDKK 373 Query: 223 KMSKQEIKDEI 233 KM+++EI+D Sbjct: 374 KMTRKEIEDNH 384 >gi|403442|gb|AAB59190.1| sodium channel alpha subunit [Drosophila melanogaster] Length = 2110 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1284 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1343 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1344 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1402 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1403 VQAIPSIFNVLLVCLIFWLIF 1423 >gi|116495769|ref|YP_807503.1| hypothetical protein LSEI_2317 [Lactobacillus casei ATCC 334] gi|116105919|gb|ABJ71061.1| Predicted membrane protein [Lactobacillus casei ATCC 334] Length = 279 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%) Query: 46 YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 +L + + +V ++ L + + + L L +++ G L Sbjct: 81 FLYALYGALLAAVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 140 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156 + + LI V + P+ R L +K++ + +L+ + + I Sbjct: 141 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 200 Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214 + ++ I + + H+ + A V + + + + + + Sbjct: 201 ALSVVVWIIIMNRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 260 Query: 215 YHQWYSKLK--MSK 226 + ++ + + M++ Sbjct: 261 TYWFWRQNRQVMTR 274 >gi|320542186|ref|NP_001188630.1| paralytic, isoform AI [Drosophila melanogaster] gi|318069420|gb|ADV37712.1| paralytic, isoform AI [Drosophila melanogaster] Length = 2086 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1260 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1319 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1320 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1378 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1379 VQAIPSIFNVLLVCLIFWLIF 1399 >gi|320542182|ref|NP_001188628.1| paralytic, isoform AG [Drosophila melanogaster] gi|318069418|gb|ADV37710.1| paralytic, isoform AG [Drosophila melanogaster] Length = 2089 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1263 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1322 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1323 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1381 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1382 VQAIPSIFNVLLVCLIFWLIF 1402 >gi|320542168|ref|NP_001188621.1| paralytic, isoform Z [Drosophila melanogaster] gi|318069411|gb|ADV37703.1| paralytic, isoform Z [Drosophila melanogaster] Length = 2089 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1263 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1322 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1323 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1381 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1382 VQAIPSIFNVLLVCLIFWLIF 1402 >gi|320542164|ref|NP_001188619.1| paralytic, isoform X [Drosophila melanogaster] gi|318069409|gb|ADV37701.1| paralytic, isoform X [Drosophila melanogaster] Length = 2125 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1299 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1358 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1359 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1417 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1418 VQAIPSIFNVLLVCLIFWLIF 1438 >gi|320542160|ref|NP_001188617.1| paralytic, isoform V [Drosophila melanogaster] gi|318069407|gb|ADV37699.1| paralytic, isoform V [Drosophila melanogaster] Length = 2097 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1271 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1330 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1331 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1389 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1390 VQAIPSIFNVLLVCLIFWLIF 1410 >gi|320542154|ref|NP_001188614.1| paralytic, isoform S [Drosophila melanogaster] gi|318069404|gb|ADV37696.1| paralytic, isoform S [Drosophila melanogaster] Length = 2100 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413 >gi|403443|gb|AAB59191.1| sodium channel alpha subunit [Drosophila melanogaster] Length = 2123 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1297 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1356 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1357 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1415 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1416 VQAIPSIFNVLLVCLIFWLIF 1436 >gi|257885810|ref|ZP_05665463.1| predicted protein [Enterococcus faecium 1,231,501] gi|257821666|gb|EEV48796.1| predicted protein [Enterococcus faecium 1,231,501] Length = 595 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 12/196 (6%) Query: 33 EASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + S+F ++ I++ F F IY L + + + +F L L Sbjct: 100 DGSIFYFLVYFSIFVYSFLFLQSIYLSMPKLETFFTAQNTQAFSSRKYFLFFTVFLVLCW 159 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN------L 145 ++ ++ S + Q + + +++ P + L + + L Sbjct: 160 LPYLLALYPGVVLPDSLSSVAQSMGDVPISNHHPVLFTL-LVKLFVHDLPTDTINHGVFL 218 Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISAN----PHSILYHAFFTVRKVLIMILL 201 + ++ + + + L N IS +A + L I Sbjct: 219 FSIFQTLITASAISYSLCWLLKRNIHFFPVLISLCYFAFAPVFPIYALNMQKDTLFSIAC 278 Query: 202 FIATLTVLDIGWSYHQ 217 F+ +L V D + + Sbjct: 279 FLFSLAVFDFIFQREK 294 >gi|46447479|ref|YP_008844.1| putative thiol-disulfide interchange protein [Candidatus Protochlamydia amoebophila UWE25] gi|46401120|emb|CAF24569.1| putative thiol-disulfide interchange protein [Candidatus Protochlamydia amoebophila UWE25] Length = 747 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 62/206 (30%), Gaps = 23/206 (11%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI-- 96 + L +LF F+ ++ + + A Q + E + + + Sbjct: 408 IFVVILASVLFIFALSLFGLFEWGMFFASWAGQTQAEKATQWSGYMGSFLSGVLATAVAT 467 Query: 97 ----PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKRIYSINNLVNFM 149 P L + F + + Q + + L + F + S ++ + + Sbjct: 468 PCTGPFLGSAVGFAVTLPVFQSLLIFTLLGLGMCFPYLLLASFPAFLRFMPKPGPWMETF 527 Query: 150 KSFVKIILVGTIITISL----TENYFTMLDFISANPHSILYHAFFTVRK----------V 195 K + +L+ T++ + N F+++ I+ + + + Sbjct: 528 KELMGFVLLITVLWLMWVFSAQTNTFSLICLIAGFLSFAIGAWIYGKGSHPLISSKKRII 587 Query: 196 LIMILLFIATLTVLDIGWSYHQWYSK 221 + LF + + I W Sbjct: 588 AYVTALFFILMGIEAIILPKDSWNDS 613 >gi|320542216|ref|NP_001188645.1| paralytic, isoform AX [Drosophila melanogaster] gi|318069435|gb|ADV37727.1| paralytic, isoform AX [Drosophila melanogaster] Length = 2099 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1273 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1332 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1333 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1391 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1392 VQAIPSIFNVLLVCLIFWLIF 1412 >gi|320542156|ref|NP_001188615.1| paralytic, isoform T [Drosophila melanogaster] gi|318069405|gb|ADV37697.1| paralytic, isoform T [Drosophila melanogaster] Length = 2110 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1284 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1343 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1344 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1402 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1403 VQAIPSIFNVLLVCLIFWLIF 1423 >gi|320542144|ref|NP_001188609.1| paralytic, isoform N [Drosophila melanogaster] gi|318069399|gb|ADV37691.1| paralytic, isoform N [Drosophila melanogaster] Length = 2100 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413 >gi|303256931|ref|ZP_07342945.1| ABC transporter, permease protein [Burkholderiales bacterium 1_1_47] gi|330998818|ref|ZP_08322545.1| branched-chain amino acid ABC transporter, permease protein [Parasutterella excrementihominis YIT 11859] gi|302860422|gb|EFL83499.1| ABC transporter, permease protein [Burkholderiales bacterium 1_1_47] gi|329576032|gb|EGG57551.1| branched-chain amino acid ABC transporter, permease protein [Parasutterella excrementihominis YIT 11859] Length = 298 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 15/181 (8%) Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------- 92 + L L F I ++ + L +A L D H V+ ++L A Sbjct: 17 IMALGVFLTFRVLDIADLSVEGTFPLGAAVAATLIDAGHSVWFAMLIALIAGCIGGTVTA 76 Query: 93 ----RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV-N 147 +L IP LL ++ IG L ++ P + ++ + ++ ++++V Sbjct: 77 LLTTKLKIPALLSGILTMIG--LYSVNLMIMGKANVPLLRAETVFTLTEDLFGVSSVVAT 134 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 + + +VG I+ T + NP T V++ +L+ + Sbjct: 135 LIVGLIATTVVGVIMYWFFGTVLGTAIRATGCNPQMARAQGINTNVMVILGLLISNGLVA 194 Query: 208 V 208 + Sbjct: 195 L 195 >gi|170756738|ref|YP_001781555.1| PTS system, fructose family, IIBC component [Clostridium botulinum B1 str. Okra] gi|169121950|gb|ACA45786.1| PTS system, fructose family, IIBC component [Clostridium botulinum B1 str. Okra] Length = 465 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 PG++ + G+ + + ++ FK++ G+ + + +K Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S + ++G +IT L + ++ ++ + I++ + I ++ D Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313 Query: 211 I 211 Sbjct: 314 F 314 >gi|149057062|gb|EDM08385.1| rCG24726, isoform CRA_b [Rattus norvegicus] Length = 911 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 329 G-RASDILSFAHKY 341 >gi|119597813|gb|EAW77407.1| transient receptor potential cation channel, subfamily M, member 7, isoform CRA_c [Homo sapiens] Length = 1864 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|114657038|ref|XP_510400.2| PREDICTED: transient receptor potential cation channel subfamily M member 7 [Pan troglodytes] Length = 1865 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|90580545|ref|ZP_01236350.1| virulence factor MviN [Vibrio angustum S14] gi|90438203|gb|EAS63389.1| virulence factor MviN [Photobacterium angustum S14] Length = 505 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 5/109 (4%) Query: 26 GNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84 G+ +RE + + L ++ L+ F + L F L Sbjct: 63 GDVDRTRELIAKAAGTLGGIVTLVTLFGVLGSGAVTALFG-FGWFWDWLHGGADAEKFEL 121 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133 L L ++ P L + ++ + ++ P F +S+ Sbjct: 122 ASLLL---KITFPYLWFITFVALSGAILNTLGKFAISSFTPVFLNISII 167 >gi|320542198|ref|NP_001188636.1| paralytic, isoform AO [Drosophila melanogaster] gi|318069426|gb|ADV37718.1| paralytic, isoform AO [Drosophila melanogaster] Length = 2113 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1287 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1346 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1347 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1405 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1406 VQAIPSIFNVLLVCLIFWLIF 1426 >gi|320542140|ref|NP_001188607.1| paralytic, isoform L [Drosophila melanogaster] gi|318069397|gb|ADV37689.1| paralytic, isoform L [Drosophila melanogaster] Length = 2087 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1261 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1320 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1321 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1379 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1380 VQAIPSIFNVLLVCLIFWLIF 1400 >gi|290893640|ref|ZP_06556622.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL J2-071] gi|290556842|gb|EFD90374.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL J2-071] Length = 650 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 16/173 (9%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 FS + A +LL L ++ R+L + F+L + L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAVLSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 95 VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149 ++ + ++ + ++ + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + + IL F + + IL F Sbjct: 286 -----FILLGTQLPQILMTIWQDVNIQKGMLFVYILGITFLLLGLRFLWILFF 333 >gi|227431358|ref|ZP_03913410.1| membrane protein, toxin regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352868|gb|EEJ43042.1| membrane protein, toxin regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 352 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 14/206 (6%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 LF +++A I L+ + + + + +A AT+ + + ++ + + Sbjct: 142 PLFVAVIAGGIGLMTLQPISV--LQTWIGDGVAYATELTPLVMGAALGVIFAFLIVSPLS 199 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 + + + G+GS + + V+ G + + + VK Sbjct: 200 SVGIAMAISLAGVGSGAANAGITVASFTLALMGASVNPIGGTLVHFVGSPKIQMANMLVK 259 Query: 155 ----------IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMILLF 202 ++G + T+ + F + L + + + + ILL Sbjct: 260 PKLFIPTSIGAAIMGAVATMLNIKGTPFSAGFGFSGLVGPLTAWSESDKSLVSIFSILLV 319 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQE 228 L V+ + +KLKM K E Sbjct: 320 FVILPVIIATVLKWLFMTKLKMIKAE 345 >gi|196231705|ref|ZP_03130562.1| hypothetical protein CfE428DRAFT_3727 [Chthoniobacter flavus Ellin428] gi|196224177|gb|EDY18690.1| hypothetical protein CfE428DRAFT_3727 [Chthoniobacter flavus Ellin428] Length = 190 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 18/172 (10%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97 + L + LLFF + + ++ L L+ L L +I Sbjct: 22 VAALGVGLVLLFFGRKLFWLFVGAVGFVVGLEAATVLFPHQPDWALIAGLILGLIGAIIA 81 Query: 98 GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157 + M GI +L ++ R + + + + SF+ + Sbjct: 82 IFVQKMAIGIAGFLSGGYFLMTAL----------------RSWELQSPESSWVSFLIGGV 125 Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 +G ++ + + ++ S + ++ H F +V + L +A +L Sbjct: 126 IGALLMYVVFN--WALIILSSISGAHLIIHPFALSHQVASVAFLALALFGIL 175 >gi|13562153|gb|AAK19738.2|AF346629_1 channel-kinase 1 [Homo sapiens] Length = 1864 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|307269903|ref|ZP_07551229.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248] gi|306513693|gb|EFM82299.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248] Length = 681 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + + +E + L +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|256958176|ref|ZP_05562347.1| predicted protein [Enterococcus faecalis DS5] gi|256948672|gb|EEU65304.1| predicted protein [Enterococcus faecalis DS5] gi|315036210|gb|EFT48142.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0027] Length = 681 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 + + +E + L +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|148612863|ref|NP_060142.3| transient receptor potential cation channel subfamily M member 7 [Homo sapiens] gi|56404941|sp|Q96QT4|TRPM7_HUMAN RecName: Full=Transient receptor potential cation channel subfamily M member 7; AltName: Full=Channel-kinase 1; AltName: Full=Long transient receptor potential channel 7; Short=LTrpC-7; Short=LTrpC7 gi|13959785|gb|AAK44211.1| LTRPC7 [Homo sapiens] gi|119597811|gb|EAW77405.1| transient receptor potential cation channel, subfamily M, member 7, isoform CRA_a [Homo sapiens] gi|119597814|gb|EAW77408.1| transient receptor potential cation channel, subfamily M, member 7, isoform CRA_a [Homo sapiens] Length = 1865 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|332235549|ref|XP_003266967.1| PREDICTED: transient receptor potential cation channel subfamily M member 7 [Nomascus leucogenys] Length = 1866 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|320542162|ref|NP_001188618.1| paralytic, isoform W [Drosophila melanogaster] gi|318069408|gb|ADV37700.1| paralytic, isoform W [Drosophila melanogaster] Length = 2102 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1276 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1335 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1336 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1394 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1395 VQAIPSIFNVLLVCLIFWLIF 1415 >gi|320542138|ref|NP_001188606.1| paralytic, isoform K [Drosophila melanogaster] gi|318069396|gb|ADV37688.1| paralytic, isoform K [Drosophila melanogaster] Length = 2076 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1250 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1309 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1310 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1368 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1369 VQAIPSIFNVLLVCLIFWLIF 1389 >gi|320542130|ref|NP_001188602.1| paralytic, isoform G [Drosophila melanogaster] gi|318069392|gb|ADV37684.1| paralytic, isoform G [Drosophila melanogaster] Length = 2087 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1261 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1320 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1321 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1379 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1380 VQAIPSIFNVLLVCLIFWLIF 1400 >gi|227432947|ref|ZP_03914889.1| ABC superfamily ATP binding cassette transporter permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351293|gb|EEJ41577.1| ABC superfamily ATP binding cassette transporter permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 387 Score = 36.7 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 5/166 (3%) Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLN 119 + + L Q++ + I + + L A + +L F+ G + + N Sbjct: 98 IFMFLLIYFQQQRQQIDKLRRKTSWRVLPALTVAFAIILAFVTSGFFWAINYLFQTASFN 157 Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNF-MKSFVKIILVGTIITISLTENYFTMLDFIS 178 L F + IYS ++ + S + ++G ++T +T + + Sbjct: 158 LFTSIALFTMFNGIINFLMIYSALSISTLFITSIFVMTIIGGVLTAMVTNSSRMWWQYNL 217 Query: 179 ANPHSILYHAFFTVRKVLIMI-LLFIATLTVLDIGWSYH-QWYSKL 222 + + + LI+ L+++A + L + + +L Sbjct: 218 SFLGTDNALDSWQFNATLILARLIWLALVDYLFVPLQKTLRHNRRL 263 >gi|163839688|ref|YP_001624093.1| multidrug resistance efflux protein [Renibacterium salmoninarum ATCC 33209] gi|162953164|gb|ABY22679.1| multidrug resistance efflux protein [Renibacterium salmoninarum ATCC 33209] Length = 510 Score = 36.7 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 53/188 (28%), Gaps = 22/188 (11%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 ++A L FF + + S S + + QR+ + ++ +A ++ G Sbjct: 114 LIAARALLGFFGAMLMPSTLSLIRNIFLDPRQRR---TAIAIWAAAFSGGAALGPIVGGF 170 Query: 100 LL---------FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 LL + + L+ P+ P + + ++ LV +K Sbjct: 171 LLEHFWWGSVFLLAVPVLIPLLIFGPIFITESRDPKPAPIDPLSIVLSFAAMVPLVYGIK 230 Query: 151 ----------SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 + + + + + + + + +L + Sbjct: 231 TFASEGLSATAVLAAAVGLFCMWLFIRRQLRQRTPMLEVQLFRNPVFTGGVLANLLSVFS 290 Query: 201 LFIATLTV 208 L + Sbjct: 291 LVGFLFFI 298 >gi|320542136|ref|NP_001188605.1| paralytic, isoform J [Drosophila melanogaster] gi|318069395|gb|ADV37687.1| paralytic, isoform J [Drosophila melanogaster] Length = 2100 Score = 36.7 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413 >gi|297696636|ref|XP_002825490.1| PREDICTED: transient receptor potential cation channel subfamily M member 7-like [Pongo abelii] Length = 1866 Score = 36.7 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|320542150|ref|NP_001188612.1| paralytic, isoform Q [Drosophila melanogaster] gi|318069402|gb|ADV37694.1| paralytic, isoform Q [Drosophila melanogaster] Length = 2076 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1250 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1309 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1310 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1368 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1369 VQAIPSIFNVLLVCLIFWLIF 1389 >gi|320542142|ref|NP_001188608.1| paralytic, isoform M [Drosophila melanogaster] gi|318069398|gb|ADV37690.1| paralytic, isoform M [Drosophila melanogaster] Length = 2100 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413 >gi|317504664|ref|ZP_07962630.1| NCS2 family nucleobase:cation symporter-2 [Prevotella salivae DSM 15606] gi|315664235|gb|EFV03936.1| NCS2 family nucleobase:cation symporter-2 [Prevotella salivae DSM 15606] Length = 406 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 7/148 (4%) Query: 68 SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127 S T L +S + F+++ L + ++ L ++ G LI L+L+ Sbjct: 83 SGTLSGLTAVSVVYFVMSALVKWQGKRLLNRLFPPVVIGPVIILIG----LSLSGTAVDM 138 Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISLTENYFTMLDFIS--ANPHSI 184 + + +++ ++ F K +K++ ++ ++ + + +DF A P Sbjct: 139 AKSNWFLAFCSLFTAIMILTFAKGLMKLVPIIAGVVVGYIVALFMHQVDFAGVVAAPWFS 198 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIG 212 F T+ L++ + + + Sbjct: 199 FPVKFDTISHFSWEPFLYMLPVAIAPVL 226 >gi|49474657|ref|YP_032699.1| hypothetical protein BQ11640 [Bartonella quintana str. Toulouse] gi|49240161|emb|CAF26623.1| hypothetical protein BQ11640 [Bartonella quintana str. Toulouse] Length = 202 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 5/142 (3%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK-LEDISHIVFLLTHLSLSAS 92 + S+L I+ F + S+ + + L++ + FL+ L+LS Sbjct: 59 IATACSVLGG-IFGWFIGNFAYDSLAKPILEFYGRIENFQALQNGVTLQFLVILLALSGF 117 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 + P ++ ++ G+ + + + L + R L + R + + + Sbjct: 118 LHLPPIKIVTILAGV---MDMHLGLFVLTCIFARGARFYLLAWLIRRFGRQAMNFLARHL 174 Query: 153 VKIILVGTIITISLTENYFTML 174 I L+G I+ + + + + Sbjct: 175 QWIALIGCIMLLLIYGTFTAFV 196 >gi|320542202|ref|NP_001188638.1| paralytic, isoform AQ [Drosophila melanogaster] gi|318069428|gb|ADV37720.1| paralytic, isoform AQ [Drosophila melanogaster] Length = 2089 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1263 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1322 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1323 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1381 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1382 VQAIPSIFNVLLVCLIFWLIF 1402 >gi|90415229|ref|ZP_01223163.1| c-type cytochrome biogenesis protein [marine gamma proteobacterium HTCC2207] gi|90332552|gb|EAS47722.1| c-type cytochrome biogenesis protein [marine gamma proteobacterium HTCC2207] Length = 575 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 4/161 (2%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL-SASRLVIPG 98 + LIYL F G+ L++ + E+ F+ L+ AS P Sbjct: 269 FVIFLIYLFFVMGLGLSGYLEIGSSLMSVGQNSQSEEGLRSSFMTGVLATTVASPCTAPF 328 Query: 99 LLLFMMFGIGSYLIQRIPVLN--LNHVKPSFKRVSLREGI-KRIYSINNLVNFMKSFVKI 155 + + F I + V + F ++ G+ KR+ ++ +K F+ Sbjct: 329 MGPALGFAISQSASIAVLVFACLGLGMALPFILLAWIPGLTKRLPKPGPWMDLLKQFLAF 388 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196 + T + + T +D +A ++ L Sbjct: 389 PIYMTAVWLLWVAGRQTSIDVAAAVIIGLILVVMGLWVWKL 429 >gi|332863422|ref|XP_003318098.1| PREDICTED: transient receptor potential cation channel subfamily M member 1 isoform 3 [Pan troglodytes] Length = 230 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|320542146|ref|NP_001188610.1| paralytic, isoform O [Drosophila melanogaster] gi|318069400|gb|ADV37692.1| paralytic, isoform O [Drosophila melanogaster] Length = 2092 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1266 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1325 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1326 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1384 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1385 VQAIPSIFNVLLVCLIFWLIF 1405 >gi|320542134|ref|NP_001188604.1| paralytic, isoform I [Drosophila melanogaster] gi|318069394|gb|ADV37686.1| paralytic, isoform I [Drosophila melanogaster] Length = 2079 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1253 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1312 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1313 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1371 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1372 VQAIPSIFNVLLVCLIFWLIF 1392 >gi|218675749|gb|AAI69233.2| transient receptor potential cation channel, subfamily M, member 7 [synthetic construct] Length = 648 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|320542152|ref|NP_001188613.1| paralytic, isoform R [Drosophila melanogaster] gi|318069403|gb|ADV37695.1| paralytic, isoform R [Drosophila melanogaster] Length = 2079 Score = 36.7 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 1253 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1312 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L+ + ++ + + + + R+ + L Sbjct: 1313 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1371 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1372 VQAIPSIFNVLLVCLIFWLIF 1392 >gi|74000124|ref|XP_862813.1| PREDICTED: similar to Transient receptor potential cation channel subfamily M member 7 (Long transient receptor potential channel 7) (LTrpC7) (Channel-kinase 1) isoform 5 [Canis familiaris] Length = 1859 Score = 36.7 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|78044282|ref|YP_359239.1| anion ABC transporter permease [Carboxydothermus hydrogenoformans Z-2901] gi|77996397|gb|ABB15296.1| anion ABC transporter, permease protein [Carboxydothermus hydrogenoformans Z-2901] Length = 230 Score = 36.7 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 11/168 (6%) Query: 52 SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF--------- 102 I+ + L+ + + + + + +L A+ + +P Sbjct: 1 MEFIWEGIKESIRLILTGDPELYQILHLTLNVSLTATLLAAIVGLPIGAFLGGKKFWGQK 60 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN--LVNFMKSFVKIILVGT 160 ++ GI + L+ PV+ + R + +Y+ L F + ++I+ Sbjct: 61 IILGIFNALLGLPPVVVGLWLTMFLWRSGPLGNLNLLYTPKAMILAQFCIALPEVIVFTA 120 Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 + ++EN+F + + AN + LY VR L+ ++ + Sbjct: 121 VAFSQISENFFRQVKALGANRYQQLYLLLKEVRLGLLAAVIAGFGAAI 168 >gi|301770089|ref|XP_002920457.1| PREDICTED: transient receptor potential cation channel subfamily M member 7-like [Ailuropoda melanoleuca] Length = 1910 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 302 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 361 Query: 297 NLIA 300 A Sbjct: 362 GRAA 365 >gi|223462573|gb|AAI50710.1| Transient receptor potential cation channel, subfamily M, member 7 [Mus musculus] Length = 1863 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|256773285|ref|NP_067425.2| transient receptor potential cation channel subfamily M member 7 isoform 1 [Mus musculus] gi|56404937|sp|Q923J1|TRPM7_MOUSE RecName: Full=Transient receptor potential cation channel subfamily M member 7; AltName: Full=Channel-kinase 1; AltName: Full=Long transient receptor potential channel 7; Short=LTrpC-7; Short=LTrpC7; AltName: Full=Transient receptor potential-phospholipase C-interacting kinase; Short=TRP-PLIK gi|14009344|gb|AAK50377.1| LTRPC7 [Mus musculus] gi|122890059|emb|CAM14550.1| transient receptor potential cation channel, subfamily M, member 7 [Mus musculus] gi|148696221|gb|EDL28168.1| transient receptor potential cation channel, subfamily M, member 7 [Mus musculus] Length = 1863 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|281341526|gb|EFB17110.1| hypothetical protein PANDA_009197 [Ailuropoda melanoleuca] Length = 1867 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|293346294|ref|XP_002726218.1| PREDICTED: transient receptor potential cation channel, subfamily M, member 7 [Rattus norvegicus] gi|149023200|gb|EDL80094.1| rCG27212, isoform CRA_b [Rattus norvegicus] Length = 1862 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|109468761|ref|XP_001056331.1| PREDICTED: transient receptor potential cation channel, subfamily M, member 7 [Rattus norvegicus] gi|215274952|sp|Q925B3|TRPM7_RAT RecName: Full=Transient receptor potential cation channel subfamily M member 7; AltName: Full=Long transient receptor potential channel 7; Short=LTrpC-7; Short=LTrpC7; AltName: Full=Transient receptor potential-phospholipase C-interacting kinase; Short=TRP-PLIK Length = 1862 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|256773287|ref|NP_001157797.1| transient receptor potential cation channel subfamily M member 7 isoform 2 [Mus musculus] gi|14211383|gb|AAK57433.1|AF376052_1 transient receptor potential phospholipase C interacting kinase [Mus musculus] gi|122890058|emb|CAM14549.1| transient receptor potential cation channel, subfamily M, member 7 [Mus musculus] Length = 1862 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|8131903|gb|AAF73131.1|AF149013_1 transient receptor potential-related protein [Mus musculus] Length = 1863 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|74000122|ref|XP_862791.1| PREDICTED: similar to transient receptor potential cation channel, subfamily M, member 7 isoform 4 [Canis familiaris] Length = 1875 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|74000116|ref|XP_535475.2| PREDICTED: similar to Transient receptor potential cation channel subfamily M member 7 (Long transient receptor potential channel 7) (LTrpC7) (Channel-kinase 1) isoform 1 [Canis familiaris] Length = 1867 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|56384981|gb|AAV85961.1| Wzy [Escherichia coli] Length = 446 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 27/220 (12%) Query: 28 APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA---TQRKLEDISHIVFLL 84 IS + LF I+ CL F +P + + S +L +Q E+++ ++ Sbjct: 39 VIISVSSVLFCVIIICLERQGGFLNPMTFCIISVFFFILIRPVFFSQNITENLNEVITAG 98 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF----KRVSLREGIKRIY 140 + + + + + F + Y +Q+ V L P K++S+ ++ Sbjct: 99 LEIDEIYVFYSLAVVNIPLAFTVLLYSVQKGTVSKLVGQLPDLFFYNKQLSMILLWGGLF 158 Query: 141 SINNLVNFMKSFVKIILVGTI-------------ITISLTENYFTMLDFISANPHSILYH 187 S + +KS+ K I++G + + Y +L + + + + + Sbjct: 159 SA---IFLIKSYKKFIILGQVSVFEADAYGLYDELFWFTLSKYCYILSLLFSKNKNFILY 215 Query: 188 AFFTVRKVLIMILLFI----ATLTVLDIGWSYHQWYSKLK 223 + + IL+ + L + + ++ K+K Sbjct: 216 SLLIFITSIGYILVGLRGYTIAYGFLLLFFLDIRYRLKIK 255 >gi|293611193|ref|ZP_06693491.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826444|gb|EFF84811.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 479 Score = 36.7 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 64/180 (35%), Gaps = 11/180 (6%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED---ISHIVFLLTHLSLS 90 A++ S ++ + +L G + S + + + +D +S + +T Sbjct: 46 AAILSFLITGTLIILVMRMLGELATASPVTGSFYAYARYAFQDSPFLSRLAGFMTGWMYW 105 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL--VNF 148 +++ L + + +Y + IP ++ V + ++S+ + F Sbjct: 106 YFWVIVIALEAIVGAKLLAYWLPDIPQWIVSLVL------LVLLTATNLFSVKSFGEFEF 159 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 S +K+ +G I + + + ++ +L H F + ++ +A Sbjct: 160 WFSSIKVAAIGVFIFLCSLYLFGFWPNHQASGLGELLNHGGFMPNGWVPVLSGAVAATGF 219 >gi|73951155|ref|XP_545816.2| PREDICTED: similar to transient receptor potential cation channel, subfamily M, member 1 [Canis familiaris] Length = 1774 Score = 36.7 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 386 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 445 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 446 G-RASDILSFAHKY 458 >gi|307327809|ref|ZP_07606992.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306886521|gb|EFN17524.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 425 Score = 36.7 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 25/199 (12%) Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY--HQWYS 220 ++ + A P I + A ++ F+ LD Q Sbjct: 153 YWYGFLPIDSLWTALLAVPVGIGFMALGATVSPFLLRGHFLLARAFLDPTPQMALEQRVQ 212 Query: 221 KLKMSKQEIKD----EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR-----ATIIITN 271 +L ++ + D E+++ + + + +A + + ++ Sbjct: 213 RLTETRHDAVDTSAAELRRIERDLHDGAQARLVAMGMSLGTVEALIEKDPAQARELLAAA 272 Query: 272 PTHYALALRYIQTEND---APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA-RSLFKQ 327 T+ A AL ++ PVL +G +R +A +P+ + LA R+ Sbjct: 273 RTNSAEALSELRDLVRGIHPPVLAERGLGD---AVRALALRMAVPVEVDVDLAGRA---- 325 Query: 328 VPINSAIPPVFYKAVAQLI 346 + + Y AV++++ Sbjct: 326 ---DEPVESAAYFAVSEVL 341 >gi|239630179|ref|ZP_04673210.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527791|gb|EEQ66792.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 275 Score = 36.7 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%) Query: 46 YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 +L + + V ++ L + + + L L +++ G L Sbjct: 77 FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 136 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156 + + LI V + P+ R L +K++ + +L+ + + I Sbjct: 137 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 196 Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214 + ++ I + + + H+ + A V + + + + + + Sbjct: 197 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 256 Query: 215 YHQWYSKLK--MSK 226 + ++ + + M++ Sbjct: 257 TYWFWRQNRQVMTR 270 >gi|225405397|ref|ZP_03760586.1| hypothetical protein CLOSTASPAR_04617 [Clostridium asparagiforme DSM 15981] gi|225043099|gb|EEG53345.1| hypothetical protein CLOSTASPAR_04617 [Clostridium asparagiforme DSM 15981] Length = 430 Score = 36.7 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 33/215 (15%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97 + ILA + + + + ++ L + V + +++ + Sbjct: 10 ARILALGFLAVILLGSFLLMLPCSVRPGVSLHYVDALFTSTSAVCVTGLIAVDTADTYTA 69 Query: 98 G-----LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 L + G+G + +L + +R+ +RE + + S LV+ +K+ Sbjct: 70 FGQAVVAALIQIGGLGVTSVGVGFILAMGKRVNLKERLLIREAM-NLESGRGLVSLVKNI 128 Query: 153 VKIILV-----GTIITISLTENYFTMLDFISANPHSILY--------------------H 187 +K+ LV + + +Y + + HSI + Sbjct: 129 LKVTLVFELTGAVLSFLVFRRDYPPVHALGISLFHSIAAFNNSGFDILGGLKNLSGYRDN 188 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 + ++ + L ++DI + + KL Sbjct: 189 VLLNLTTAGLITFGGLGFLVIMDIV--RKRSFKKL 221 >gi|46908523|ref|YP_014912.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes serotype 4b str. F2365] gi|226224898|ref|YP_002759005.1| Na+/H+ antiporter [Listeria monocytogenes Clip81459] gi|254825072|ref|ZP_05230073.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL J1-194] gi|254854305|ref|ZP_05243653.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL R2-503] gi|254933319|ref|ZP_05266678.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes HPB2262] gi|254993298|ref|ZP_05275488.1| Na+/H+ antiporter [Listeria monocytogenes FSL J2-064] gi|255521713|ref|ZP_05388950.1| Na+/H+ antiporter [Listeria monocytogenes FSL J1-175] gi|300763900|ref|ZP_07073896.1| sodium:hydrogen exchanger family protein [Listeria monocytogenes FSL N1-017] gi|46881795|gb|AAT05089.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes serotype 4b str. F2365] gi|225877360|emb|CAS06074.1| Putative Na+/H+ antiporter [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607697|gb|EEW20305.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL R2-503] gi|293584880|gb|EFF96912.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes HPB2262] gi|293594315|gb|EFG02076.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL J1-194] gi|300515241|gb|EFK42292.1| sodium:hydrogen exchanger family protein [Listeria monocytogenes FSL N1-017] gi|328471571|gb|EGF42451.1| Na+/H+ antiporter [Listeria monocytogenes 220] gi|332312776|gb|EGJ25871.1| Sodium/hydrogen exchanger protein [Listeria monocytogenes str. Scott A] Length = 650 Score = 36.7 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 FS + A +LL L ++ R+L + F+L + L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 95 VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149 ++ + ++ + ++ + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + IL F + + IL F Sbjct: 286 -----FILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 333 >gi|47214189|emb|CAG00817.1| unnamed protein product [Tetraodon nigroviridis] Length = 1342 Score = 36.7 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 246 QKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304 ++ + + K+ +I+ P ++ L ++ E PV++ G A + Sbjct: 247 RRQLEKHIALQKINTRVPVVCLILEGGPNVISIMLESLREEPPVPVVICDGSG-RAADII 305 Query: 305 KIAYEH 310 A+++ Sbjct: 306 SFAHKY 311 >gi|13631306|sp|Q9TUK4|MSHR_PANTR RecName: Full=Melanocyte-stimulating hormone receptor; Short=MSH-R; AltName: Full=Melanocortin receptor 1; Short=MC1-R gi|5777722|emb|CAB53398.1| melanocortin 1 receptor [Pan troglodytes] gi|126635481|dbj|BAF48468.1| melanocortin 1 receptor [Pan troglodytes] gi|332150738|dbj|BAK20443.1| melanocortin 1 receptor [Pan troglodytes verus] gi|332150740|dbj|BAK20444.1| melanocortin 1 receptor [Pan troglodytes verus] Length = 317 Score = 36.7 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLH---VLLASATQRKLEDISHIVFLLTHLSL 89 + SS+L+ L +L S+ L ++ +R + I L + L + Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAIAAIWVASVLFSTLFI 180 Query: 90 S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 + LV+ L + ++ + + + + KR + + + Sbjct: 181 AYCDHTAVLLCLVVFFLAVLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312 >gi|221121310|ref|XP_002159206.1| PREDICTED: similar to GK17226 [Hydra magnipapillata] Length = 518 Score = 36.7 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 12/180 (6%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 A +L L+ + +YS++ D + + + I +L+ L + Sbjct: 328 AGAICGLLGSLLVSIIPIPRMLYSMSQDGLLFNFFSIVHPKSQVPVISTILSGLFIGILA 387 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 +I L M IG+ L I V+ + ++ Y +L+ Sbjct: 388 AIIDLAELVEMMSIGTLLAYSIVVICVLILRYDLTP--PPN---NNYESESLIEI---IF 439 Query: 154 KIILVGTIITISL----TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 I LV T+I + + +N + I P L+ + + + + + + Sbjct: 440 IIALVATVIYLFVKDTTKDNLAFKVPMIPWIPVVALFFNVYLMSMLSQITWIRFGIWLFI 499 >gi|191639254|ref|YP_001988420.1| hypothetical protein LCABL_24960 [Lactobacillus casei BL23] gi|190713556|emb|CAQ67562.1| Putative uncharacterized protein yhfC (YhfC protein) [Lactobacillus casei BL23] gi|327383335|gb|AEA54811.1| Membrane protein [Lactobacillus casei LC2W] gi|327386518|gb|AEA57992.1| Membrane protein [Lactobacillus casei BD-II] Length = 215 Score = 36.7 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%) Query: 46 YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 +L + + V ++ L + + + L L +++ G L Sbjct: 17 FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 76 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156 + + LI V + P+ R L +K++ + +L+ + + I Sbjct: 77 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 136 Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214 + ++ I + + + H+ + A V + + + + + + Sbjct: 137 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 196 Query: 215 YHQWYSKLK--MSK 226 + ++ + + M++ Sbjct: 197 TYWFWRQNRQVMTR 210 >gi|332262627|ref|XP_003280363.1| PREDICTED: transient receptor potential cation channel subfamily M member 1 isoform 4 [Nomascus leucogenys] Length = 230 Score = 36.7 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ E PV++ G Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVICDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|291276839|ref|YP_003516611.1| major facilitator superfamily oligopeptide transporter [Helicobacter mustelae 12198] gi|290964033|emb|CBG39872.1| putative oligopeptide transporter (major facilitator superfamily protein) [Helicobacter mustelae 12198] Length = 496 Score = 36.7 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 64/178 (35%), Gaps = 15/178 (8%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+F + L + G++ + + V + D F++ ++ ++ Sbjct: 102 LSVFWHFMFFLGLVFIVLGSGLFKTCASVMVGMLYKDGDARRDSG---FIIFYMGINLGA 158 Query: 94 LVIPGLLLFMM--------FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145 V P L + FGIG + ++ P F + G+ + +S N Sbjct: 159 FVAPLLCGLVQKQYGWHWGFGIGGLGMLISLIIFYFKAIPDFNDFDRKFGLDKSWSSPNT 218 Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203 +K+ + VG + + + + ++ NP + + F + I+ +++ Sbjct: 219 K--VKNIG--LYVGIALALLFAFIFACGVGWVKINPVWVAKNMVFLISACAILYFIYL 272 >gi|217963549|ref|YP_002349227.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes HCC23] gi|217332819|gb|ACK38613.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes HCC23] gi|307571875|emb|CAR85054.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes L99] Length = 650 Score = 36.7 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 FS + A +LL L ++ R+L + F+L + L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAVLSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 95 VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149 ++ + ++ + ++ + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + IL F + + IL F Sbjct: 286 -----FILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 333 >gi|293392492|ref|ZP_06636812.1| inner membrane protein YbaL [Serratia odorifera DSM 4582] gi|291424894|gb|EFE98103.1| inner membrane protein YbaL [Serratia odorifera DSM 4582] Length = 564 Score = 36.7 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 70/211 (33%), Gaps = 27/211 (12%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 + + LA + +L F G++ DL + + A + I+ L LS Sbjct: 54 TSLAPELAEIGVILLMFGVGLHFSLKDLLAVKSIAIPGAVAQIAVATLLGIGLSHLLGWD 113 Query: 95 VIPGLLLFMMFGIGSYLI-------------QRIPVLNLNHVKPSFKRV----------S 131 +I GL+ + S ++ QR + + V + Sbjct: 114 LISGLVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLAMVLTLVLLPAFGN 173 Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191 L G ++ L + K++ ++ + +L A S FT Sbjct: 174 LLGGGNHASTLQLLSELAITIGKVVAFMALMIVVGRRAVPWIL----AKTASTGSRELFT 229 Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 + + + + + + + D+ ++ +++ + Sbjct: 230 LAVLALALGIAYGAVGLFDVSFALGAFFAGM 260 >gi|309389269|gb|ADO77149.1| nucleoside ABC transporter membrane protein [Halanaerobium praevalens DSM 2228] Length = 299 Score = 36.7 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 57/184 (30%), Gaps = 12/184 (6%) Query: 26 GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85 G + + ++ +++ F G S L+ + L + + Sbjct: 29 GGIFSEKSGVINIALEGIMLFGAFAAVLGSSQTGSPWMGLVYAMIGGVLF---AAILAVV 85 Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145 + A ++V+ + G+ +L+Q N+ P R+ +S+ Sbjct: 86 CILFRADQIVVGTGINIFASGLTIFLLQ--IFFNVKGTSPQVTRLPFLRIFDVRFSVLTY 143 Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 V +ILV + ++ + I +P + R I +L+ Sbjct: 144 V-------AVILVPIVYYFFFKTHWGLRIRSIGEHPAAADTLGINVNRWRFISVLMSGVL 196 Query: 206 LTVL 209 + Sbjct: 197 AGLA 200 >gi|257876622|ref|ZP_05656275.1| auxin efflux carrier family permease [Enterococcus casseliflavus EC20] gi|257810788|gb|EEV39608.1| auxin efflux carrier family permease [Enterococcus casseliflavus EC20] Length = 313 Score = 36.7 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 I+ L ++ +F+ ++ + + A + I L +P Sbjct: 68 MIIPLLSMMITYFAGYLWRRFAQVETKHQGAFSAMFTFSNTIFIGLPINLAIFGEKAVPY 127 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSF--KRVS--LREGIKRIYSINNLVNFMKSFVK 154 +LL+ + + + L I + L P F R+S +K+I+S Sbjct: 128 VLLYYI--VNTTLFWTIGIFELAKDNPDFGEARISFHPLVMLKKIFSP------------ 173 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214 L+G II + + + S + + + + +FI + V Sbjct: 174 -ALIGFIIGL--------IWMLFTFPLPSFVDGLGSYLADLTTPLSMFIIGIIV------ 218 Query: 215 YHQWYSKLKMSKQ 227 Y L+M+K Sbjct: 219 YFGGLKNLRMTKD 231 >gi|227511005|ref|ZP_03941054.1| conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] gi|227085747|gb|EEI21059.1| conserved hypothetical protein [Lactobacillus buchneri ATCC 11577] Length = 578 Score = 36.7 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 19/201 (9%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 IL I + +FS + + + + F L +S S L +P Sbjct: 119 IILMTFIGVTAYFSYLSIEQGKTIGAYTFAVAYMMSGLLINTNFTAADLGISFSLLFLPL 178 Query: 99 LLLFM----------MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148 +L + M +G LI VLN V + +++ K + N L+N Sbjct: 179 VLAGLYHWLTSNHYKMLTVGISLICLSHVLNFIFVIVTLVLLTIINFKK--VTKNKLINL 236 Query: 149 MKSFVKIILVGTIITI-------SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 +K+ V +LV + + S+ N L+ I I+ Sbjct: 237 VKAIVLTVLVTSSFWLPAYSFGTSVKMASPQKFPLAGINLPKYLFLTLTNSTWSSISIVA 296 Query: 202 FIATLTVLDIGWSYHQWYSKL 222 + + + ++ ++ Sbjct: 297 LLGLILGFVFYRTLPKYLKQI 317 >gi|149181915|ref|ZP_01860403.1| hypothetical protein BSG1_08256 [Bacillus sp. SG-1] gi|148850354|gb|EDL64516.1| hypothetical protein BSG1_08256 [Bacillus sp. SG-1] Length = 413 Score = 36.7 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 59 TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118 + + K + ++ + + + ++P L ++ GIG L V Sbjct: 272 ANLMIPFFFKKMTLKTYLLGSTIWAIGIIVIGTFYGILPLFLGAVIVGIGLPLAGLARVY 331 Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178 L + P + + R +S N + ++ + + + + G +++ + F + I Sbjct: 332 LLQTLVPQ-------DMLGRGFSFNAFLLYLANTLALTIFGVLVSYFAINSLFIISGVIM 384 Query: 179 ANPHSILYHAFFT 191 P I + Sbjct: 385 LFPALIFILLLLS 397 >gi|302871891|ref|YP_003840527.1| rod shape-determining protein RodA [Caldicellulosiruptor obsidiansis OB47] gi|302574750|gb|ADL42541.1| rod shape-determining protein RodA [Caldicellulosiruptor obsidiansis OB47] Length = 369 Score = 36.7 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 63/195 (32%), Gaps = 7/195 (3%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 I+ CL + S T ++++ L +++F L + A+ Sbjct: 16 VITILMIILCLTGFILIASATNVLETGKYKLVISQVIWFCLGLSLYLIFSLIDYRMFANF 75 Query: 94 LVIPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLV 146 VI + + ++ GI QR + +P ++ + ++ ++ + Sbjct: 76 YVIIYMTMVILLLYVDLKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENI 135 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 N K+ K+++ I + + + + + + + + + Sbjct: 136 NKFKTLAKVLIFTAIPIVLVLKQPDLGTASVFVAIIATILFVAGLDLRYFYAAIGALLVF 195 Query: 207 TVLDIGWSYHQWYSK 221 + + H++ Sbjct: 196 IPIAWEFVLHEYQKD 210 >gi|86360100|ref|YP_471989.1| efflux cation transporter protein [Rhizobium etli CFN 42] gi|86284202|gb|ABC93262.1| probable efflux cation transporter protein [Rhizobium etli CFN 42] Length = 1050 Score = 36.7 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 26/203 (12%) Query: 24 NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83 +G S E ++ + G++ + + L VL D + L Sbjct: 832 EQGELQRSSELFQSFALAMAI---------GVFCIYAVLVVLF--------HDFLQPLTL 874 Query: 84 LTHLSLSASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140 L L LS ++P ++ F M + L+ V + + + +S +G+ R Sbjct: 875 LMALPLSLGGALVPLVVTGTSFSMPAVIGLLMLMGVVTKNSILLIEYAIMSRHQGMSRF- 933 Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 + LV+ + I++ TI L + A + V++ L Sbjct: 934 --DALVDACHKRARPIVMTTIAMAF--GMLPAALSLTGGDSSFRQPMAIVVIGGVIMSTL 989 Query: 201 LFIATL-TVLDIGWSYHQWYSKL 222 L + + + H+W +L Sbjct: 990 LSLIVIPVIFTFVDDLHEWLKRL 1012 >gi|329770101|ref|ZP_08261494.1| hypothetical protein HMPREF0433_01258 [Gemella sanguinis M325] gi|328837283|gb|EGF86917.1| hypothetical protein HMPREF0433_01258 [Gemella sanguinis M325] Length = 471 Score = 36.7 bits (84), Expect = 6.2, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 9/143 (6%) Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL- 99 + L IY S+T + I I + + +IPG+ Sbjct: 46 IVSYFALFAMLGISIYGTKQIAASRDVSSTFWNIYIIQVITSGIAIVIYFFIIKLIPGMS 105 Query: 100 ---LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 L + + L+ + + FK++++R GI ++ + ++ F+KS + Sbjct: 106 GMIPLILAISLFGKLVDISWLFSGKE---DFKKITIRNGIVKLAGVLSIFTFIKS--QDQ 160 Query: 157 LVGTIITISLTENYFTMLDFISA 179 L + + + + ++ ++ A Sbjct: 161 LYLYVFFLVIFDFLGQLVMWVPA 183 >gi|257867717|ref|ZP_05647370.1| auxin efflux carrier [Enterococcus casseliflavus EC30] gi|257874044|ref|ZP_05653697.1| auxin efflux carrier [Enterococcus casseliflavus EC10] gi|257801800|gb|EEV30703.1| auxin efflux carrier [Enterococcus casseliflavus EC30] gi|257808208|gb|EEV37030.1| auxin efflux carrier [Enterococcus casseliflavus EC10] Length = 313 Score = 36.7 bits (84), Expect = 6.2, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%) Query: 39 SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 I+ L ++ +F+ ++ + + A + I L +P Sbjct: 68 MIIPLLSMMITYFAGYLWRRFAQVETKHQGAFSAMFTFSNTIFIGLPINLAIFGEKAVPY 127 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSF--KRVS--LREGIKRIYSINNLVNFMKSFVK 154 +LL+ + + + L I + L P F R+S +K+I+S Sbjct: 128 VLLYYI--VNTTLFWTIGIFELAKDNPDFGEARISFHPLVMLKKIFSP------------ 173 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214 L+G II + + + S + + + + +FI + V Sbjct: 174 -ALIGFIIGL--------IWMLFTFPLPSFVDGLGSYLADLTTPLSMFIIGIIV------ 218 Query: 215 YHQWYSKLKMSKQ 227 Y L+M+K Sbjct: 219 YFGGLKNLRMTKD 231 >gi|255283992|ref|ZP_05348547.1| ribose ABC transporter, permease protein [Bryantella formatexigens DSM 14469] gi|255265445|gb|EET58650.1| ribose ABC transporter, permease protein [Bryantella formatexigens DSM 14469] Length = 338 Score = 36.7 bits (84), Expect = 6.2, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 13/113 (11%) Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 P L + G+G+ L ++ + +F ++ ++S N++N ++S K + Sbjct: 8 PLKKLLGIRGMGAALTAFAGLI---IIYIAFGLINPA-----VFSGQNILNLLRSMSKYL 59 Query: 157 LVGTI-ITISLTENYFT----MLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 L+G I +T N M+ + +++ H + +L+ +L +A Sbjct: 60 LIGIAQSYILITGNIDLSIGSMVGMSAMISATLMTHGVHPLFAILVALLACLA 112 >gi|268680041|ref|YP_003304472.1| hypothetical protein Sdel_1419 [Sulfurospirillum deleyianum DSM 6946] gi|268618072|gb|ACZ12437.1| hypothetical protein Sdel_1419 [Sulfurospirillum deleyianum DSM 6946] Length = 1215 Score = 36.3 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187 + KRI N KSF+ + +V + L+ + ++ + Sbjct: 136 DKTIPYSRFKRI------KNLKKSFLILHVVAIV--FFLSYVFSIYFPTKASAFLQVSQA 187 Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 F + M+ LFI L + + ++ S LK+SK +K Sbjct: 188 DFISALNESKMLFLFIVLPIGLYYFYQFIKYLSNLKISKFNLK 230 >gi|153812723|ref|ZP_01965391.1| hypothetical protein RUMOBE_03130 [Ruminococcus obeum ATCC 29174] gi|149831239|gb|EDM86328.1| hypothetical protein RUMOBE_03130 [Ruminococcus obeum ATCC 29174] Length = 443 Score = 36.3 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 21/179 (11%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F++ LAC + I + + + + KL +FL S+S + LV Sbjct: 151 FAAALACCGFTFLLGGGFIEMFCAFVGAGFGNFLRCKLTKHHFTLFLCIVSSVSLACLVY 210 Query: 97 PGLLLF--MMFGI--------GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 G L M+FGI ++ IP ++ +R G +R+ + L+ Sbjct: 211 AGFLKIGEMLFGISVQHEAGYICAMLFIIPGFPFITSGIDLAKLDMRSGTERL--MYALI 268 Query: 147 NFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLIMILLFIA 204 ++LV T+ + +DFI + ++ + + + Sbjct: 269 --------VVLVATMAAWIMALLLHLQPVDFIKMSMPVGMWIVLHLIASFCGVFGFSVM 319 >gi|312127630|ref|YP_003992504.1| rod shape-determining protein roda [Caldicellulosiruptor hydrothermalis 108] gi|311777649|gb|ADQ07135.1| rod shape-determining protein RodA [Caldicellulosiruptor hydrothermalis 108] Length = 369 Score = 36.3 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 63/195 (32%), Gaps = 7/195 (3%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 I+ CL + S T ++++ L + +F L + A+ Sbjct: 16 VITILMIILCLTGFILIASATNVLETGKYKLVISQVIWFCLGLSLYFIFSLIDYRIFANF 75 Query: 94 LVIPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLV 146 VI +++ ++ GI QR + +P ++ + ++ ++ + Sbjct: 76 YVIIYMIMVILLLYVDIKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENI 135 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 N K+ K+++ I + + + + + + + + + Sbjct: 136 NKFKTLAKVLIFTAIPIVLVLKQPDLGTASVFIAIIATILFVAGLDLRYFYAAIGALLVF 195 Query: 207 TVLDIGWSYHQWYSK 221 + + H++ Sbjct: 196 IPIAWEFVLHEYQKD 210 >gi|11993700|gb|AAG42856.1|AF325212_1 melastatin 2 [Homo sapiens] Length = 338 Score = 36.3 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +I+ P ++ L Y++ PV+V G Sbjct: 261 EVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGS 320 Query: 297 NLIAKKMRKIAYEH 310 A + +++ Sbjct: 321 G-RASDILAFGHKY 333 >gi|94309606|ref|YP_582816.1| major facilitator transporter [Cupriavidus metallidurans CH34] gi|93353458|gb|ABF07547.1| Major facilitator superfamily MFS_1 transporter [Cupriavidus metallidurans CH34] Length = 418 Score = 36.3 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 64/197 (32%), Gaps = 30/197 (15%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 RE L + L L F G +LL R+ E + ++ + L + Sbjct: 53 RELGLTAGDLGLLTSFYFL---GFACAQLPAGILLDRFGPRRTEAVMLMLAVAGSLVFAW 109 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 + ++ M G+G + + L+ P + R+ +N LV + Sbjct: 110 APGMVGLAAGRAMIGVGVSVCLGAAIQALSMWFP----------LSRMPLLNGLVMAIGG 159 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 +++ + + ++ T+ + V+ + + V D+ Sbjct: 160 LGAVVVGAPLSWLLSWTDWRTISAGM----------------AVISFGMAALLWFGVPDV 203 Query: 212 GWS-YHQWYSKLKMSKQ 227 + +L+ ++Q Sbjct: 204 KRQGKESFAEQLRGTRQ 220 >gi|332863416|ref|XP_003318096.1| PREDICTED: transient receptor potential cation channel subfamily M member 1 isoform 1 [Pan troglodytes] Length = 1642 Score = 36.3 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 262 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 321 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 322 G-RASDILSFAHKY 334 >gi|255325377|ref|ZP_05366483.1| integral membrane protein [Corynebacterium tuberculostearicum SK141] gi|255297942|gb|EET77253.1| integral membrane protein [Corynebacterium tuberculostearicum SK141] Length = 230 Score = 36.3 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%) Query: 214 SYHQWYSKLK--MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264 +Q +K MSK E K E K+ + ++ R + +M E R Sbjct: 66 QRYQHRKDMKKSMSKDEWK-EYKKKE-----RQERQQANRE-QQARMAEGDPR 111 >gi|116195220|ref|XP_001223422.1| hypothetical protein CHGG_04208 [Chaetomium globosum CBS 148.51] gi|88180121|gb|EAQ87589.1| hypothetical protein CHGG_04208 [Chaetomium globosum CBS 148.51] Length = 649 Score = 36.3 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 15/192 (7%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK----LEDISHIVFLLT 85 S E F+S L +L P ++ L +A D I + Sbjct: 292 KSFEVLFFASFLFLYYAVLMERDPTRFTTLEVFLCLWLAAFAYDELSEWIDAGSIFYAAD 351 Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145 ++ ++ G F M G+ +++L + + + + R++SI +L Sbjct: 352 VWNIFDMFMIGIGFTYFAMLGVVGLGTNNARLVDLAFDVLALEALFMVP---RVFSILSL 408 Query: 146 V----NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 K F+K +++ +I + + T ++ + +S+ A R + Sbjct: 409 SPYWGEMGKDFLKFMVLVVVIYLG----FLTTFSLVARDAYSLNDMAGSLTRIFFGSSGV 464 Query: 202 FIATLTVLDIGW 213 + +D + Sbjct: 465 GFDIMHNIDSIF 476 >gi|297624348|ref|YP_003705782.1| DegT/DnrJ/EryC1/StrS aminotransferase [Truepera radiovictrix DSM 17093] gi|297165528|gb|ADI15239.1| DegT/DnrJ/EryC1/StrS aminotransferase [Truepera radiovictrix DSM 17093] Length = 394 Score = 36.3 bits (83), Expect = 6.5, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 264 RATIIITNPTHYALALRYIQTENDAP----VLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319 A +P H AL + AP ++ G +++ + + +P+ E+ Sbjct: 120 EADTWNMSPEHLERALAERAAQGRAPKAVILVHLYGMPAKMREIMALCERYGVPVIEDA- 178 Query: 320 LARSLFKQVP 329 A +L Sbjct: 179 -AEALGSTYE 187 >gi|254567672|ref|XP_002490946.1| Chitin synthase III, catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin [Pichia pastoris GS115] gi|238030743|emb|CAY68666.1| Chitin synthase III, catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin [Pichia pastoris GS115] gi|328352521|emb|CCA38920.1| chitin synthase [Pichia pastoris CBS 7435] Length = 1188 Score = 36.3 bits (83), Expect = 6.5, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 49/138 (35%), Gaps = 20/138 (14%) Query: 140 YSINNLV--NFMKSFV---KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV-- 192 +S+ ++ + + V I +I ++ + +L + L V Sbjct: 1000 FSMQFVIGIELVGTLVLPAAICFTVYVIIFAIVSHPTPILSLVLLGIIFGLPGLLIVVTV 1059 Query: 193 --RKVLIMILLFIATLTVLDIGWSYHQWYS-------KLKMSKQEIKDEIKQSYG---NP 240 ++ +L+++ L + + + ++ + +++ EIKD + G Sbjct: 1060 SSWSYILWLLVYLVALPIWNFVLPSYAYWKFDDFSWGETRVTSHEIKDAHGEIEGLFDGS 1119 Query: 241 IIKNRQ-KSIARSRIRHK 257 I ++ + R R R Sbjct: 1120 HIIQKRWREFERDRRRSN 1137 >gi|227533669|ref|ZP_03963718.1| membrane protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188653|gb|EEI68720.1| membrane protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 279 Score = 36.3 bits (83), Expect = 6.5, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%) Query: 46 YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 +L + + V ++ L + + + L L +++ G L Sbjct: 81 FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 140 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156 + + LI V + P+ R L +K++ + +L+ + + I Sbjct: 141 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 200 Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214 + ++ I + + + H+ + A V + + + + + + Sbjct: 201 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 260 Query: 215 YHQWYSKLK--MSK 226 + ++ + + M++ Sbjct: 261 TYWFWRQNRQVMTR 274 >gi|332296369|ref|YP_004438292.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] gi|332179472|gb|AEE15161.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] Length = 459 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 22/195 (11%), Positives = 60/195 (30%), Gaps = 15/195 (7%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRL 94 + S + + + LFF S ++ + ++ L S L ++ ++F + + Sbjct: 80 IVSILFSVFLLGLFFGSYIFDNIFIPIFLIALCSIFFTFLFVLTLLMFFKENFVFWSVIF 139 Query: 95 VIPGLLLFMMFGIGSYLIQRIPVLNLNH---VKPSFKRVSLREGIKRIYSINNLVNFMKS 151 I L ++ + + + L+ + + +++ ++ +S + F K Sbjct: 140 AISTLFATIVMFLLNKIFNNFSYLSFSSFPLLMFVLSKINFDSYFRKNFSKFDFGVFPKK 199 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI-----------L 200 + + L ++ +I Y V + I Sbjct: 200 IIFVFLGFYCCGGAVYNFLLNFSTNNDYFLSNIAYCISALVLPIFIYFKKLEISSLYRPS 259 Query: 201 LFIATLTVLDIGWSY 215 L I + + Sbjct: 260 LAILIVAFFWFPLYF 274 >gi|149927835|ref|ZP_01916086.1| sodium/hydrogen exchanger [Limnobacter sp. MED105] gi|149823457|gb|EDM82688.1| sodium/hydrogen exchanger [Limnobacter sp. MED105] Length = 565 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 18/196 (9%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 SRE S I L L F + G++ V+ L A R+ E LS Sbjct: 224 SRELFTLSVI--ALAISLAFVAAGLFDVSFALGAFFAGMVMRESE-----------LSHR 270 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 A+ +P F + S + + L + V++ K + + LV K Sbjct: 271 AAEESLPLRDAFAVLFFVSVGMLFQFDVILEYPLRVLAVVAIIVLGKSL-AAGALVLLFK 329 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL- 209 +K LV + E F ++ L V ++ I L +++ Sbjct: 330 YPLKSALVIAASLAQIGEFSFILIGLGLYLGLVDLQVQSLVVSGAILSIALNPVVFSLIP 389 Query: 210 ---DIGWSYHQWYSKL 222 D QW L Sbjct: 390 KINDYMVQRFQWVRNL 405 >gi|303242602|ref|ZP_07329078.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302589859|gb|EFL59631.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 287 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 7/147 (4%) Query: 62 LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121 L+ L A + + I+F++ + ASR++ L++ + ++L+ + L Sbjct: 122 LYGLSLLAIYFGIGIAATILFVILGVVTVASRVIGILLIVLFVLAFIAFLLAFAFLTALW 181 Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181 + + +G K+ +S+ KS+ +VG + + + + + + Sbjct: 182 FASMVDDGLGVVDGFKKSFSV------AKSYF-WSIVGISLLVWIGSAFGGGILSGIFSF 234 Query: 182 HSILYHAFFTVRKVLIMILLFIATLTV 208 ++ + F + L +L + V Sbjct: 235 IPVISYTFSSGVSALAQFILIVFYFEV 261 >gi|238757509|ref|ZP_04618694.1| Uncharacterized mscS family protein [Yersinia aldovae ATCC 35236] gi|238704271|gb|EEP96803.1| Uncharacterized mscS family protein [Yersinia aldovae ATCC 35236] Length = 1105 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 7/146 (4%) Query: 76 DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135 D+ V L +S + RLV L + + + + + + S G Sbjct: 763 DVEEPVIDLDVISAQSLRLVRSILTMIALVSVIALWSEIHSAFGFLENIRLWDVSSTING 822 Query: 136 IKRIYSINNLVNFMKSFVKIILVGTIITISLTEN--YFTMLDFISANPHSILYHAFFTVR 193 I+ S+ + M S + ILV + T + + + +A T+ Sbjct: 823 IE---SVQAIT--MGSLLIAILVMIVTTQLVRNLPALLELAILQHLDLTPGTGYAISTIT 877 Query: 194 KVLIMILLFIATLTVLDIGWSYHQWY 219 K L+++ + ++L I W+ QW Sbjct: 878 KYLLILFGSLLGFSMLGIEWAKFQWL 903 >gi|168185020|ref|ZP_02619684.1| PTS system, fructose family, IIBC component [Clostridium botulinum Bf] gi|237795423|ref|YP_002862975.1| PTS system fructose family transporter subunit IIBC [Clostridium botulinum Ba4 str. 657] gi|182671943|gb|EDT83904.1| PTS system, fructose family, IIBC component [Clostridium botulinum Bf] gi|229261226|gb|ACQ52259.1| PTS system, fructose family, IIBC component [Clostridium botulinum Ba4 str. 657] Length = 465 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 5/175 (2%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 PG++ + G+ + + + F + K + + +KS + Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGF--FAGYLMLYSKKLLSGLPKQFEGLKSIFILP 262 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 ++G +IT L + ++ ++ + I++ + I ++ D Sbjct: 263 IIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFDF 314 >gi|240850337|ref|YP_002971730.1| potassium-efflux system protein [Bartonella grahamii as4aup] gi|240267460|gb|ACS51048.1| potassium-efflux system protein [Bartonella grahamii as4aup] Length = 583 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 65/203 (32%), Gaps = 22/203 (10%) Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 S L ++ + S+ S + +L A + +E Sbjct: 95 QMAFSTFLGLCLGLIMGWGFGGSLIFGLALSIASTVILLRALQERHLIET--------EK 146 Query: 87 LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 ++ L+I L + ++ + L + + P + + L I+ + Sbjct: 147 GRIAVGWLIIEDLAMVLILVLIPSLASALSNTKKEALDPLVQWLDLSIWG--IFGL---- 200 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 + +K+I+ ++ + +L + + F + I + + Sbjct: 201 ----TILKVIVFIALMLVIGRRVIPWLLKMSAQSGS----RELFRLSVFAIALGVAFGAA 252 Query: 207 TVLDIGWSYHQWYSKLKMSKQEI 229 + + S +++ + MS+ E+ Sbjct: 253 HLFGVSLSLGAFFAGMVMSESEL 275 >gi|332863418|ref|XP_003318097.1| PREDICTED: transient receptor potential cation channel subfamily M member 1 isoform 2 [Pan troglodytes] Length = 1625 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 245 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 304 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 305 G-RASDILSFAHKY 317 >gi|148379953|ref|YP_001254494.1| PTS system, fructose family, IIBC component [Clostridium botulinum A str. ATCC 3502] gi|153931264|ref|YP_001384251.1| PTS system, fructose family, IIBC component [Clostridium botulinum A str. ATCC 19397] gi|153935815|ref|YP_001387791.1| PTS system, fructose family, IIBC component [Clostridium botulinum A str. Hall] gi|148289437|emb|CAL83534.1| PTS system, IIbc component [Clostridium botulinum A str. ATCC 3502] gi|152927308|gb|ABS32808.1| PTS system, fructose family, IIBC component [Clostridium botulinum A str. ATCC 19397] gi|152931729|gb|ABS37228.1| PTS system, fructose family, IIBC component [Clostridium botulinum A str. Hall] Length = 465 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 5/175 (2%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 PG++ + G+ + + + F + K + + +KS + Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGF--FAGYLMLYSKKLLSGLPKQFEGLKSIFILP 262 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 ++G +IT L + ++ ++ + I++ + I ++ D Sbjct: 263 IIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFDF 314 >gi|78065283|ref|YP_368052.1| preprotein translocase subunit SecF [Burkholderia sp. 383] gi|77966028|gb|ABB07408.1| protein translocase subunit secF [Burkholderia sp. 383] Length = 316 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL------ 206 + +++G +I +S + + I AN H I+ F L +A + Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDIVIILGFFAFFQWEFSLAVLAAILAVLGY 200 Query: 207 ----TVLDIGWSYHQWYSKLKMSKQEI 229 +V+ + + KMS QE+ Sbjct: 201 SVNESVVIFDRIRETFRRERKMSVQEV 227 >gi|120556568|ref|YP_960919.1| Na/Pi-cotransporter II-related protein [Marinobacter aquaeolei VT8] gi|120326417|gb|ABM20732.1| Na/Pi-cotransporter II-related protein [Marinobacter aquaeolei VT8] Length = 535 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 10/166 (6%) Query: 42 ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL 101 A + LFF I + L D F+L L + L Sbjct: 139 ALAGFALFFLGLSILKTALESSALGFQNGHLINADYGLPAFMLIGLLATVLTQSSSAALA 198 Query: 102 FMMFGIGSYLI-------QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154 ++ LI I + + + +R+ + + L N + + Sbjct: 199 IVLTAAAGGLIPLDNAAAAVIGANLGSTSTAALSALKATANARRLATGHILFNLVTGVIA 258 Query: 155 IILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMI 199 ++++ ++ + +LD + S L+H F V IM+ Sbjct: 259 LLVLPAMLWLV--NTLTNLLDLEANPAVSLALFHTLFNVLGAAIML 302 >gi|324500123|gb|ADY40068.1| Voltage-dependent L-type calcium channel subunit alpha-1F [Ascaris suum] Length = 1891 Score = 36.3 bits (83), Expect = 6.8, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY-G 238 + A T+ ++++ + ++ + ++ + KM++QE + E G Sbjct: 922 QCVIVAVKTIGNIMLVTFMLQFMFAIIGVQLFKGTFFKCNDESKMTEQECRGEFLAYEDG 981 Query: 239 NPIIKNRQKS 248 +P+ R + Sbjct: 982 DPMKPQRMRR 991 >gi|226949289|ref|YP_002804380.1| PTS system, fructose family, IIBC component [Clostridium botulinum A2 str. Kyoto] gi|226843405|gb|ACO86071.1| PTS system, fructose family, IIBC component [Clostridium botulinum A2 str. Kyoto] Length = 465 Score = 36.3 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 5/175 (2%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 PG++ + G+ + + + F + K + + +KS + Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGF--FAGYLMLYSKKLLSGLPKQFEGLKSIFILP 262 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 ++G +IT L + ++ ++ + I++ + I ++ D Sbjct: 263 IIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFDF 314 >gi|83627713|ref|NP_001032823.1| transient receptor potential cation channel subfamily M member 1 isoform 1 [Rattus norvegicus] gi|123779859|sp|Q2WEA5|TRPM1_RAT RecName: Full=Transient receptor potential cation channel subfamily M member 1; AltName: Full=Melastatin-1 gi|83318701|emb|CAI30141.1| transient receptor potential cation channel,subfamily M, member 1 long variant [Rattus norvegicus] Length = 1628 Score = 36.3 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 329 G-RASDILSFAHKY 341 >gi|83627699|ref|NP_001032822.1| transient receptor potential cation channel subfamily M member 1 isoform 2 [Rattus norvegicus] gi|83318703|emb|CAI30142.1| transient receptor potential cation channel,subfamily M, member 1 variant delta1066-1071 [Rattus norvegicus] Length = 1622 Score = 36.3 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 329 G-RASDILSFAHKY 341 >gi|319638544|ref|ZP_07993306.1| rod shape-determining protein RodA [Neisseria mucosa C102] gi|317400293|gb|EFV80952.1| rod shape-determining protein RodA [Neisseria mucosa C102] Length = 383 Score = 36.3 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 21/178 (11%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 LF ++LA I LF +YS L + T + + + + +A+++ Sbjct: 22 LFFAMLAIYIMSLFL----LYSADGQEFGQLENKTIHTVLGFALLWIIAVFKPQTAAKVA 77 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +P ++ ++ IG + + + F R+ E +KI Sbjct: 78 LPVYIVGVLLLIGVEVAGVTVNGSTRWLSLGFTRIQPSE-----------------IMKI 120 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 + T+ IL +++ + I + I + Sbjct: 121 GIPMTVAWYFQRYEGRLKWIHYIVALVLILVPVALILKQPDLGTAALIMASGIFVIFF 178 >gi|312135124|ref|YP_004002462.1| rod shape-determining protein roda [Caldicellulosiruptor owensensis OL] gi|311775175|gb|ADQ04662.1| rod shape-determining protein RodA [Caldicellulosiruptor owensensis OL] Length = 369 Score = 36.3 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 64/195 (32%), Gaps = 7/195 (3%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 I+ CL + S T ++++ L +++F L + A+ Sbjct: 16 VLTILMIILCLTGFILIASATNVLETGKYKLVISQVIWFCLGLSLYLIFSLIDYRMFANF 75 Query: 94 LVIPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLV 146 VI +++ ++ GI QR + +P ++ + ++ ++ + Sbjct: 76 YVIIYMIMVILLLYVDIKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENI 135 Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 N K+ K+++ I + + + + + + + + + Sbjct: 136 NKFKTLAKVLIFTAIPIVLVLKQPDLGTASVFIAIITTILFVAGLDLRYFYAAIGALLVF 195 Query: 207 TVLDIGWSYHQWYSK 221 + + H++ Sbjct: 196 IPIAWEFILHEYQKD 210 >gi|260550116|ref|ZP_05824330.1| membrane protein [Acinetobacter sp. RUH2624] gi|260406871|gb|EEX00350.1| membrane protein [Acinetobacter sp. RUH2624] Length = 303 Score = 36.3 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 22/186 (11%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + SL I + + F ++ + +L + L ++ + L + Sbjct: 2 QSVSLIIQIFIVIAFGYFLGPKLSLNIRQFIFKILPYFSYILLTSVALELTLALDQINNP 61 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 S ++ P LL+ GS+ I + E +K S+ +N +K+ Sbjct: 62 STILPPALLIAFTTSFGSFFTCLIAYAIFDK-----------ESVKGKISLQLFINALKN 110 Query: 152 FVKIIL---VGTIITISLT--------ENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 K L VG I+ I T +++ +L FI + + F +++ Sbjct: 111 IAKAFLALTVGIILGILFTRLNIHISFNSWYLLLVFIFLIGIELAFTHFNRTWLSWKILI 170 Query: 201 LFIATL 206 + +A Sbjct: 171 VPLAAF 176 >gi|153938803|ref|YP_001391316.1| PTS system, fructose family, IIBC component [Clostridium botulinum F str. Langeland] gi|152934699|gb|ABS40197.1| PTS system, fructose family, IIBC component [Clostridium botulinum F str. Langeland] gi|295319345|gb|ADF99722.1| PTS system, fructose family, IIBC component [Clostridium botulinum F str. 230613] Length = 465 Score = 36.3 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 F LI + F + + S + +A+ + + I+ + ++ S Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSVQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204 Query: 97 PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 PG++ + G+ + + ++ FK++ G+ + + +K Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 S + ++G +IT L + ++ ++ + I++ + I ++ D Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313 Query: 211 I 211 Sbjct: 314 F 314 >gi|301067325|ref|YP_003789348.1| hypothetical protein LCAZH_2289 [Lactobacillus casei str. Zhang] gi|300439732|gb|ADK19498.1| Predicted membrane protein [Lactobacillus casei str. Zhang] Length = 279 Score = 36.3 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 66/194 (34%), Gaps = 13/194 (6%) Query: 46 YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102 +L + + V ++ L + + ++ L L +++ G L Sbjct: 81 FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKSVTPETPFLYGLGHGGLEMILIGSLTM 140 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156 + + LI V + P+ R L +K++ + +L+ + + I Sbjct: 141 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 200 Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214 + ++ I + + + H+ + A V + + + + + + Sbjct: 201 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGVLNGAVEEVLLVVQTILVLAF 260 Query: 215 YHQWYSKLK--MSK 226 + ++ + + M++ Sbjct: 261 TYWFWRQNRQVMTR 274 >gi|258650787|ref|YP_003199943.1| major facilitator superfamily protein [Nakamurella multipartita DSM 44233] gi|258554012|gb|ACV76954.1| major facilitator superfamily MFS_1 [Nakamurella multipartita DSM 44233] Length = 524 Score = 36.3 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 18/193 (9%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99 ++A L FF + + + S L L QR+L + ++ +A ++ G Sbjct: 126 LIAARAALGFFGAMLMPATLSLLRNLFVDRQQRRL---AIAIWAAGFSGGAALGPIVGGF 182 Query: 100 LL---------FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 LL M + L+ P+ P+ R+ L + ++ LV +K Sbjct: 183 LLEHYWWGSAFLMAVPVLVLLLILAPIFVPESKDPNPGRLDLVSIALSLLTMAPLVYAIK 242 Query: 151 SF----VKIILVGTIITISLTENYFTMLDFISANPHSI--LYHAFFTVRKVLIMILLFIA 204 + + + +G + L + F NP L+ VL +L A Sbjct: 243 AVAHDGISTLAIGLVAVGLLAGSAFVRRQLTRPNPMLDVRLFRRSAFTGAVLANLLAVFA 302 Query: 205 TLTVLDIGWSYHQ 217 + L + Q Sbjct: 303 LVGFLFFVAQHLQ 315 >gi|194206366|ref|XP_001492285.2| PREDICTED: transient receptor potential cation channel, subfamily M, member 1 [Equus caballus] Length = 1655 Score = 36.3 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 267 EVKLRRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 326 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 327 G-RASDILSFAHKY 339 >gi|297243639|ref|ZP_06927570.1| histidine kinase sensor of two-component system [Gardnerella vaginalis AMD] gi|296888390|gb|EFH27131.1| histidine kinase sensor of two-component system [Gardnerella vaginalis AMD] Length = 755 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 79/211 (37%), Gaps = 15/211 (7%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV-FLLTHLSLSA 91 + + + ++++ + ++S L+ ++ ++ +V F+ S + Sbjct: 424 DIIYAAPWIVLMLFVPTYDFILGDGMSSQYFDSLSLEIFYRVFTLATMVPFMFRRKSPTT 483 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 +V + + + L + + PS ++ G KR + + + ++S Sbjct: 484 CAIVAAIFSAIQLIFLPNILFANLFI-------PSIIYAAVLYGKKRAWQWISAIVLLES 536 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + + +G T + F ++N + ++ + V ++ +A + I Sbjct: 537 AIFALKIGIASRNIPKNA--TPIQFFTSNIDTTNFYIIMQMASVGLVFGFAVALICFTVI 594 Query: 212 GWSYHQWYSK-----LKMSKQEIKDEIKQSY 237 ++Y++ LK + E++ E KQ Sbjct: 595 AFAYYRRNDDNNLLLLKTRRTELEQEQKQLE 625 >gi|254881882|ref|ZP_05254592.1| ABC transporter [Bacteroides sp. 4_3_47FAA] gi|319641115|ref|ZP_07995818.1| ABC transporter [Bacteroides sp. 3_1_40A] gi|254834675|gb|EET14984.1| ABC transporter [Bacteroides sp. 4_3_47FAA] gi|317387246|gb|EFV68122.1| ABC transporter [Bacteroides sp. 3_1_40A] Length = 770 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 12/164 (7%) Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88 S S A I+ +F F GI + S + L + L I ++ + Sbjct: 307 AKSIGVHKCSGASAINIFSMFLFETGIVVLMSVIVALFIIFNTKDL--IEDLLSVQLSSL 364 Query: 89 LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSLREGIKRIYSINNLVN 147 + L +P L++F++F + L R + + V F+R ++G KR Sbjct: 365 FTLETLWVPILIVFVLFIVAGVLPGR--LFSRIPVTQVFRRYTDGKKGWKRSL------- 415 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191 F+ + V I+ +SL + + + + ++ + Sbjct: 416 LFVQFMGVSFVMGILLVSLMQYHHLINSDMGIRTPGLVEAETWM 459 >gi|257077449|ref|ZP_05571810.1| predicted protein [Enterococcus faecalis JH1] gi|294779630|ref|ZP_06745021.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1] gi|256985479|gb|EEU72781.1| predicted protein [Enterococcus faecalis JH1] gi|294453287|gb|EFG21698.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1] Length = 683 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A + +E + + +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQTFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|119597815|gb|EAW77409.1| transient receptor potential cation channel, subfamily M, member 7, isoform CRA_d [Homo sapiens] Length = 820 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|257091160|ref|ZP_05585521.1| predicted protein [Enterococcus faecalis CH188] gi|312902625|ref|ZP_07761830.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635] gi|256999972|gb|EEU86492.1| predicted protein [Enterococcus faecalis CH188] gi|310633963|gb|EFQ17246.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635] gi|315163292|gb|EFU07309.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0645] gi|315578984|gb|EFU91175.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0630] Length = 683 Score = 36.3 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A + +E + + +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQTFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|33235690|dbj|BAC80202.1| melastatin 1 splicing variant [Homo sapiens] Length = 230 Score = 36.3 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|330958748|gb|EGH59008.1| histidine kinase, HAMP region: chemotaxis sensory transducer [Pseudomonas syringae pv. maculicola str. ES4326] Length = 598 Score = 36.3 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 10/95 (10%), Positives = 30/95 (31%), Gaps = 8/95 (8%) Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA-----FFTVRKVLIMILLFIAT 205 S +++V ++ ++ + P + +++ LF Sbjct: 25 SLFLLVVVSALLYWVALSIRADIMLQLRGTPMDAAALGQIQSRLDLLSNAILLSTLFTLV 84 Query: 206 LTVLDIGWSYHQWYSK-LKMSKQEIKDEIKQSYGN 239 + + + H L M++ +E+ G+ Sbjct: 85 MVSFMVWYFRHLIVRPVLSMTR--ALEEVASGEGD 117 >gi|225075640|ref|ZP_03718839.1| hypothetical protein NEIFLAOT_00656 [Neisseria flavescens NRL30031/H210] gi|224953062|gb|EEG34271.1| hypothetical protein NEIFLAOT_00656 [Neisseria flavescens NRL30031/H210] Length = 383 Score = 36.3 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 21/178 (11%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 LF ++LA I LF +YS L + T + + + + +A+++ Sbjct: 22 LFFAMLAIYIMSLFL----LYSADGQEFGQLENKTIHTVLGFALLWIIAVFKPQTAAKVA 77 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +P ++ ++ IG + + + F R+ E +KI Sbjct: 78 LPVYIVGVLLLIGVEVAGVTVNGSTRWLSLGFTRIQPSE-----------------IMKI 120 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 + T+ IL +++ + I + I + Sbjct: 121 GIPMTVAWYFQRYEGRLKWIHYIVALVLILVPVALILKQPDLGTAALIMASGIFVIFF 178 >gi|73666918|ref|YP_302934.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Ehrlichia canis str. Jake] gi|72394059|gb|AAZ68336.1| NADH dehydrogenase subunit A [Ehrlichia canis str. Jake] Length = 123 Score = 36.3 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 14/116 (12%) Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE-GIKRIYSINNLVNFMKSFVK 154 +P L+ + G S+L +P+L L P +++S E G + S + + V+ Sbjct: 11 VPVLIFLAVAGFISFLFAVLPML-LAKCNPDLEKLSPYECGFAPLGSSRKIFD-----VR 64 Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 LV + I L+ P SI +MI L I T+ + Sbjct: 65 FYLVAILFIIF-------DLEIAFLFPWSICLSDIGVNGFWSMMIFLAILTVGFIY 113 >gi|311741494|ref|ZP_07715318.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303664|gb|EFQ79743.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 233 Score = 36.3 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%) Query: 214 SYHQWYSKLK--MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264 +Q +K MSK E K E K+ + ++ R + +M E R Sbjct: 69 QRYQHRKDMKKSMSKDEWK-EYKKKE-----RQERQQANRE-QQARMAEGDPR 114 >gi|261289535|ref|XP_002604744.1| hypothetical protein BRAFLDRAFT_58873 [Branchiostoma floridae] gi|229290072|gb|EEN60754.1| hypothetical protein BRAFLDRAFT_58873 [Branchiostoma floridae] Length = 294 Score = 36.3 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 14/102 (13%) Query: 12 EAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71 E+PS ++ A EG + + ++FS + I + GI+ + Sbjct: 13 ESPSPRRRRLA-EEGQVNLCVKYTIFSVNVIFWIVGGAVLAIGIWGMVEK---------- 61 Query: 72 RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113 ++S V LT++ S +V+ +L+F++ G+ +L+ Sbjct: 62 ---RNLSSGVARLTNVDNSVLAVVMDPMLIFVVVGLLIFLLS 100 >gi|327242739|gb|AEA41103.1| para-like sodium channel [Stomoxys calcitrans] Length = 1759 Score = 36.3 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 42/141 (29%), Gaps = 19/141 (13%) Query: 44 LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98 + + D+H+ Q L + I ++ L + L + Sbjct: 930 TAVITMILMSSLALALEDVHLPERPVMQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 989 Query: 99 ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145 +++ + + L + ++ + + + + R+ + L Sbjct: 990 NAWCWLDFVIVMVSLINFVASLAGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1048 Query: 146 VNFMKSFVKIILVGTIITISL 166 V + S ++LV I + Sbjct: 1049 VQAIPSIFNVLLVCLIFWLIF 1069 >gi|327404162|ref|YP_004345000.1| O-antigen polymerase [Fluviicola taffensis DSM 16823] gi|327319670|gb|AEA44162.1| O-antigen polymerase [Fluviicola taffensis DSM 16823] Length = 464 Score = 36.3 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 45/223 (20%) Query: 46 YLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA--------SRLVIP 97 + +F+ P ++ + L+ L R L D+ LL L ++A ++ + Sbjct: 32 AIRYFWIPCLFLFLAGLNKLFNGHELRSLRDLYSSFMLLPFLLITARGIFSIRVFKVAVI 91 Query: 98 GLLLFMMFGIGSYLIQRIPVLNL-NHVKPSFKRVSL----REGIKR---IYSINNLVNF- 148 +++ GI Y + N+ F +S+ G I+ + L+ Sbjct: 92 FVIIECFVGILEYYFKTRSFFVPLNNESMIFNDISIYGTRVFGFATNSPIFGLRCLIALF 151 Query: 149 ----------MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL-- 196 +K K+IL +I L F S + ++ ++R+++ Sbjct: 152 ILEFIPWKRYLKWIFKVILFLGVIVSFNRSVVICCLVFYSLQFVQLAWNQRHSLRQLVRN 211 Query: 197 ------IMILLFIATLTVLDIGWSYHQWYSKLK-MSKQEIKDE 232 ++ + +A + D +K M++ +K E Sbjct: 212 KYFYDSLVTFILLALVFGSDFM---------MKGMNRDGVKRE 245 >gi|126635483|dbj|BAF48469.1| melanocortin 1 receptor [Pan paniscus] gi|332150742|dbj|BAK20445.1| melanocortin 1 receptor [Pan paniscus] gi|332150744|dbj|BAK20446.1| melanocortin 1 receptor [Pan paniscus] gi|332150746|dbj|BAK20447.1| melanocortin 1 receptor [Pan paniscus] Length = 317 Score = 36.3 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLH---VLLASATQRKLEDISHIVFLLTHLSL 89 + SS+L+ L +L S+ L ++ +R + I L + L + Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAIAAIWVASVLFSTLFI 180 Query: 90 S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 + LV+ L + ++ + + + + KR + + + Sbjct: 181 AYCDHTAVLLCLVVFFLAVLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312 >gi|163839911|ref|YP_001624316.1| oligopeptide transporter, permease protein [Renibacterium salmoninarum ATCC 33209] gi|162953387|gb|ABY22902.1| oligopeptide transporter, permease protein [Renibacterium salmoninarum ATCC 33209] Length = 511 Score = 36.3 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 60/212 (28%), Gaps = 21/212 (9%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 + + +F+ + + + Q + I + + + ++ + Sbjct: 137 DYGVTFMTFLFFSLPIFWAAVLLKEFGAISFNTFLQDPQIPIGVILVVAVIFGLIGMAVA 196 Query: 93 RLVIPG-LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR-EGIKRIYSINNLVNFMK 150 R + F + L+ L P V + G+ + I L +K Sbjct: 197 RGAWKKRWIAFGGTAVVVALVLGYISLTGWLKTPGLGPVVIAASGVGIAFGITALTAGLK 256 Query: 151 ------SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL-------- 196 S + ++++G I +L + + V Sbjct: 257 NRKALYSSLVVVVIGLICYYALQPLLSDATFLMVVILAIVAILVGVAVGYFFGGYDRAQN 316 Query: 197 ----IMILLFIATLTVLDIGWSYH-QWYSKLK 223 + +A L +LD Q+Y +++ Sbjct: 317 MRAAALTAFLVAALVLLDRFMQSWPQYYDQVR 348 >gi|149409580|ref|XP_001506335.1| PREDICTED: similar to polymerase (RNA) I polypeptide B, 128kDa [Ornithorhynchus anatinus] Length = 738 Score = 36.3 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 13/144 (9%) Query: 27 NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86 P R+ +L L + + L L+ + ++ I+ +L Sbjct: 445 QLPQDRD-DFVLGVLNFFFILYYLLETVMKIFALGLKGYLSFPSNVFDGLLTGILLVLEI 503 Query: 87 LSLSASRLVIPG----LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 +L+ R PG +L + + L+ V + P+ K +SL Sbjct: 504 STLAVYRFPHPGWKPEMLGLLSLWDMARLVNMFIVFRFLRIIPNMKLMSLVAS------- 556 Query: 143 NNLVNFMKSFVKIILVGTIITISL 166 L++ +K+ + ++ Sbjct: 557 -TLLDLVKNLRAFAGILVVVYYVF 579 >gi|139438447|ref|ZP_01771963.1| Hypothetical protein COLAER_00953 [Collinsella aerofaciens ATCC 25986] gi|133775986|gb|EBA39806.1| Hypothetical protein COLAER_00953 [Collinsella aerofaciens ATCC 25986] Length = 333 Score = 36.3 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 29/163 (17%) Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234 + +L H + ++ I+ + + S+ + ++L+ + ++ D I Sbjct: 135 RLVEPALLGLLGHLPVLIVRLSAFIVAVAMMVDAVCSLASWRRLSNQLERVRADLADRIN 194 Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY---AL----------ALRY 281 +S + M+E +TI TH A+ AL Sbjct: 195 ESLAD--------------ASDSMLERIPDSTIDSVAQTHIRSRAVNGWLAELGDAALDA 240 Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324 ++ + P +A G +A R++A P PSL+R L Sbjct: 241 LREKASMPTFIADGARGLALAARRVADAA--PNMPRPSLSRRL 281 >gi|315282568|ref|ZP_07870953.1| polysaccharide biosynthesis family protein [Listeria marthii FSL S4-120] gi|313613786|gb|EFR87545.1| polysaccharide biosynthesis family protein [Listeria marthii FSL S4-120] Length = 537 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 69/196 (35%), Gaps = 11/196 (5%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA---- 91 L+ + H + SA + +E ++ IVFLL + Sbjct: 126 TTVIRAVSFALLIIPVMSLLRGYFQGFHSMGPSAVSQVIEQVARIVFLLASTYIVLHVLN 185 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK-RIYSINNLVNFMK 150 LV L +G++ + KP +++ K R+ + + L Sbjct: 186 GSLVTAMSLATFAAFVGAFFSLICLIWYYRKRKPDIQKMIAGSNNKLRVSTFHLLKEISI 245 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHS------ILYHAFFTVRKVLIMILLFIA 204 S V I+VG +++ + FT ++ + + +L F+V+K++++ Sbjct: 246 SAVPFIIVGMAMSLYQQIDLFTFARILTYDGMAGKTAEDLLSIFNFSVQKIIMIPGTLAL 305 Query: 205 TLTVLDIGWSYHQWYS 220 ++ + ++ Sbjct: 306 AFSMTLVPLVAAAFHK 321 >gi|313892130|ref|ZP_07825723.1| putative Na+/H+ antiporter NhaC [Dialister microaerophilus UPII 345-E] gi|313119268|gb|EFR42467.1| putative Na+/H+ antiporter NhaC [Dialister microaerophilus UPII 345-E] Length = 460 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 18/202 (8%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA------SATQRKLEDISHIVFLLTHL 87 L +L + + I +V + +++ +A + + I T + Sbjct: 74 VPLIIFMLIGTLVASLIAAGTIPTVVVYGYKIISAKYLPVTAFIICIAEGLTIGSSFTTI 133 Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S L+ G + + + I N++ P +L I I +L N Sbjct: 134 STMGVVLITLGRISEIPDAYIAGAIVSGAFFA-NNMSPLADVPNLCSAIGEIPLSKHLRN 192 Query: 148 FMKSFVKIILVGTIITISLTEN-----------YFTMLDFISANPHSILYHAFFTVRKVL 196 KS + ++++ II + L + ++ F +P +++ + Sbjct: 193 LAKSTLPVLVISIIIYVILGGSANEVSGGIAETIQSLNKFFFVSPITLVPILLIFIASWR 252 Query: 197 IMILLFIATLTVLDIGWSYHQW 218 + + + ++ Y + Sbjct: 253 KLPAIASLLIGIISALIIYVFF 274 >gi|212634709|ref|YP_002311234.1| hypothetical protein swp_1887 [Shewanella piezotolerans WP3] gi|212556193|gb|ACJ28647.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 464 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 20/140 (14%) Query: 34 ASLFSSILACLIYLLFFFSPGI--YSVTSDLHVLLAS-ATQRKLEDISHIVFLLTHLSLS 90 + I+ LL F+SPGI +T + +++A A Q + + L+ + L Sbjct: 265 IAYILMIIGVYGLLLEFYSPGIGVAGITGAISLIIALYAFQMLPLSYAGLALLMLGIVLL 324 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150 + ++P +F + GI ++++ I + + +P F+ VS + Sbjct: 325 ITESMVPSFGIFGVGGIAAFVVGSIFLFDT--PQPQFQ-VSPI--------------LIA 367 Query: 151 SFVKIILVGTIITISLTENY 170 S I L+ + + Sbjct: 368 SIAFISLLFFVFALGFILRM 387 >gi|220931298|ref|YP_002508206.1| hypothetical protein Hore_04530 [Halothermothrix orenii H 168] gi|219992608|gb|ACL69211.1| hypothetical protein Hore_04530 [Halothermothrix orenii H 168] Length = 231 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 S + I G + +++GI + + +++LN + + + G+KR + + Sbjct: 50 SQLFFSIFISGFVYLIIYGINNIITSLPFLVSLNCPRKVVAKNIIFTGLKRSF----IFT 105 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 + F+K+I+ G +IT S + F M + + V I L+ + +L Sbjct: 106 LLILFIKVIVFGRVITDSYAVSAFGMDLTSNTPGDIFVIALLLYVALNFINSLITLISLL 165 Query: 208 VLDIGWSY 215 + GW Y Sbjct: 166 GVRYGWQY 173 >gi|228933266|ref|ZP_04096122.1| Branched-chain amino acid ABC transporter, permease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826427|gb|EEM72204.1| Branched-chain amino acid ABC transporter, permease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 286 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 70/184 (38%), Gaps = 11/184 (5%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + S++ L+ +L F G+++ + V L + T + + V + L R Sbjct: 21 LASGLSLIFGLMSVLNFAHGGLFAWGAFTGVWLFNMTGSYVLALIGAVAMGMFLGFILER 80 Query: 94 LVIPGL----LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 +I + + ++ +G L+ + P ++ L ++ ++ ++ + Sbjct: 81 FLIRPVYGNHVRQLLVTLGGMLVLSECIKVFWGPNPIGAKLPL--WLQGSFTFGGVI-LI 137 Query: 150 KSFVKIILVGTIITISLTENY----FTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 K + +IL+G II ++L ++ ++ V+ + + L A Sbjct: 138 KYRLFVILIGIIIYVALLVLLKKTKIGLMIRAGVMDKEMIQALGINVKAIFSFVFLLGAG 197 Query: 206 LTVL 209 + L Sbjct: 198 MAAL 201 >gi|146296878|ref|YP_001180649.1| rod shape-determining protein RodA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410454|gb|ABP67458.1| cell elongation-specific peptidoglycan biosynthesis regulator RodA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 369 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 7/193 (3%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF------LLTHLSL 89 + IL C+I S T ++++ L + VF +LT+ + Sbjct: 18 IVLMILLCIIGFGLIASASNILDTGKYKLVVSQVIWFCLGFVLFFVFSIIDYRILTNFYV 77 Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLVNF 148 ++I LL + GI QR + +P ++ + ++ S+ +N Sbjct: 78 IIYLIMIGLLLYVDINGINVLGGQRWIKIGPLSFQPSEISKLLMVIFFAKVVSMQENINA 137 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 ++ K++ I I + + + + + + + +A Sbjct: 138 FENLAKVLFFAIIPIIFVLKQPDLGTASVFVAIIVTILFVAGLSLRYFYIAMGALAVFIP 197 Query: 209 LDIGWSYHQWYSK 221 + + + Sbjct: 198 IAWEFILLDYQKD 210 >gi|88800113|ref|ZP_01115682.1| hypothetical protein MED297_09176 [Reinekea sp. MED297] gi|88777094|gb|EAR08300.1| hypothetical protein MED297_09176 [Reinekea sp. MED297] Length = 507 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 22/208 (10%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 + S +LA + Y F + + V AT ++ L+++A Sbjct: 55 DPSAALILLAGVYYGAIFGGSTSSILINAPGVAGTVATSFDGYPMARDGKAGKALTIAAI 114 Query: 93 RLVIPG-LLLFMMFGIGSYLIQRIPVLN----LNHVKPSFKRVSLREGIKRIYSINNLVN 147 G + ++ G L+Q + + + ++ G ++ Sbjct: 115 ASFTGGTIGAVLLMGFAPALVQVALLFHSAEYFALMVLGLSAIAAFAGRGQVSKA----- 169 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 + + +G ++ + F M F L + + M L A L Sbjct: 170 -----LMMTCLGLMLATVGESSLFQMPRFTMGLMD--LQSGIGFITLAMAMFALPEAILL 222 Query: 208 VLD-----IGWSYHQWYSKLKMSKQEIK 230 +LD S+L+++K E K Sbjct: 223 ILDKTRSKTPDQQQNEISQLRITKDEAK 250 >gi|224499032|ref|ZP_03667381.1| hypothetical protein LmonF1_04743 [Listeria monocytogenes Finland 1988] Length = 650 Score = 36.3 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%) Query: 35 SLFSSILACLIYLLFFFSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 FS + A +LL + ++ S L ++L ++ + L+ L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAILSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFMK 150 +V + + + + S + + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVH--SFSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV---- 285 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + I+ F + + IL F Sbjct: 286 ----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333 >gi|294712586|ref|NP_001171025.1| transient receptor potential cation channel subfamily M member 7 [Taeniopygia guttata] Length = 1825 Score = 36.3 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 22/101 (21%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K+I RI ++ + ++ P L ++Q PV+V +G Sbjct: 259 EVKLRRELEKTINLQRIHARIGQGVPVVALVFEGGPNVILTVLDFLQESPPVPVVVCEGT 318 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337 A + + KQ +P Sbjct: 319 G-RAADILAY-----------------VHKQTEEGGNVPEG 341 >gi|169607915|ref|XP_001797377.1| hypothetical protein SNOG_07022 [Phaeosphaeria nodorum SN15] gi|111064553|gb|EAT85673.1| hypothetical protein SNOG_07022 [Phaeosphaeria nodorum SN15] Length = 384 Score = 36.3 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 98 GLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 +LL M+F IG+ + I + + V+L +G K + L S VKI Sbjct: 62 LMLLAMVFSIGTTILVIMASQLYGWDRHVWDLLPVTLEQGRKASLAGQTLFVLASSTVKI 121 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 ++ + + + L A F V V + + + T T++D Sbjct: 122 SIL--VSYFRIAPEKSLFRKLVWGT--FALVFAAFVVFLVALWVQCMLVTSTMIDAF 174 >gi|84683344|gb|ABC61252.1| transient receptor potential cation channel subfamily M member 7 [Equus caballus] Length = 178 Score = 36.3 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 22/99 (22%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K+I + RI ++ + +I P L Y+Q PV+V +G Sbjct: 5 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 64 Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335 A L ++KQ +P Sbjct: 65 GRAA------------------DLLAYIYKQTEEGGNLP 85 >gi|332262621|ref|XP_003280360.1| PREDICTED: transient receptor potential cation channel subfamily M member 1 isoform 1 [Nomascus leucogenys] Length = 1642 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ E PV++ G Sbjct: 262 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVICDGS 321 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 322 G-RASDILSFAHKY 334 >gi|326795401|ref|YP_004313221.1| hypothetical protein Marme_2142 [Marinomonas mediterranea MMB-1] gi|326546165|gb|ADZ91385.1| protein of unknown function DUF214 [Marinomonas mediterranea MMB-1] Length = 818 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 37/229 (16%) Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69 KT + K++ I + +LFF I + L + Sbjct: 287 KTMGATPKRLTK------------------ITVYQLGVLFFIGAAIGLLLGFLIQFVIGL 328 Query: 70 TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129 + L I L L + + + + + + LIQ P+ LN P F+ Sbjct: 329 LLQDLMSIELPAPDFGKLWLGVATGFVSLIAFCVP--LMARLIQVSPLSVLNPSAP-FQA 385 Query: 130 VSLREGIKRIYSINNLVN------------FMKSFVKIILVGTIITISLTENYFTMLDFI 177 +L + + + L+ F+ V +++G + Sbjct: 386 NALAIYVAGLVGMYALMFIYTGGIALPTIMFLSIVVIALVIGGLGYCLFRFGRAQTKGAT 445 Query: 178 SANPHSILYHAFFTVRKVL-IMILLFIATLTVLDIGWS---YHQWYSKL 222 + + + + +++ I L ++ G W +L Sbjct: 446 TGWQIGLASLYRRLLSNLFQLLVFTVILMLGLILYGIQANLISDWQKQL 494 >gi|119913489|ref|XP_606035.3| PREDICTED: transient receptor potential cation channel, subfamily M, member 6 [Bos taurus] Length = 1670 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 246 QKSIARSRIRH----KMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ + + ++ + +++ P ++ L Y++ E PV+V G A Sbjct: 292 RRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVVCDGSG-RA 350 Query: 301 KKMRKIAYEH 310 + A+++ Sbjct: 351 SDILSFAHKY 360 >gi|313502276|gb|ADR63151.1| cytochrome b [Mesocriconema xenoplax] gi|313502278|gb|ADR63152.1| cytochrome b [Mesocriconema xenoplax] Length = 237 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 71/164 (43%), Gaps = 6/164 (3%) Query: 64 VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123 + S + +++ +I ++FL + ++I + F + + L+ +P + LN V Sbjct: 64 LFFFSFSLKEVWNIGIMIFLFLMMESFLGYVLIWSQMSFWACTVITSLLMILPFIGLNLV 123 Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF-TMLDFISANPH 182 + + +++ I + + + +L+ + + NY T +++ Sbjct: 124 FWVWSNFFVSLLTLKLFFILHFIFPL-----FLLIMVFLHLFFLHNYGSTSKIYLNGFFD 178 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226 I + +F ++ L +IL+FI + +L + ++ L+M+ Sbjct: 179 KITFFPYFWLKDFLNLILVFIIFVFILFYPYFFNDPEMFLEMNH 222 >gi|260910159|ref|ZP_05916836.1| AcrB/AcrD family multidrug resistance protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635663|gb|EEX53676.1| AcrB/AcrD family multidrug resistance protein [Prevotella sp. oral taxon 472 str. F0295] Length = 1089 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 39/234 (16%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK-LEDISHIVFLLTHLSLS 90 + + CL+++ S S L V+L+ + + + + Sbjct: 889 QSNTTAIIFALCLVFVYLILSAQYESYLLPLSVILSLPFGLAGAFIFTQLFGHQNDIYMQ 948 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQ---RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147 + +++ GLL I + ++ + + + + R+ Sbjct: 949 IALIMLIGLLAKNAILIVEFALERRRTGMAIKYSAILGAASRLRP--------------- 993 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 I++ G + I L F + N + L A V +LI ++L I + Sbjct: 994 -------ILMTGLAMVIGLLPMMFA--SGVGKNGNQTLGAA--AVGGMLIGMVLQIFVVP 1042 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261 L + + + K S E DE N +K+ K AR K ++A Sbjct: 1043 ALFVIFQ---HLQE-KFSPLEFGDEE-----NREVKSELKQYARQMAIEKDVKA 1087 >gi|257890465|ref|ZP_05670118.1| PTS system fructose specific IIBC component [Enterococcus faecium 1,231,410] gi|257826825|gb|EEV53451.1| PTS system fructose specific IIBC component [Enterococcus faecium 1,231,410] Length = 487 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 4/173 (2%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96 + ++ + F GIYS D A+A K+ + + ++ L+ + + Sbjct: 144 FVVAGGVLIAISFAVWGIYSFDPDHAQYNATAAMVKVVGDAAMGMMVPVLAAYIAEGIAK 203 Query: 97 -PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 PGL++ + GI S + + + + + + I ++ +K+ Sbjct: 204 RPGLVVGFVGGIVSMNGGTGFLGGILAGFLAGYFILFLQKLLTILPKQ--LDGLKAIFLY 261 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 ++G + + I+ S L + VL +I+ + + Sbjct: 262 PVIGVAFIGIVMSLLAGPMKAINEGMMSFLAGFEHSNPLVLGVIVGCMCAFDM 314 >gi|239932117|ref|ZP_04689070.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291440487|ref|ZP_06579877.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291343382|gb|EFE70338.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 840 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 9/108 (8%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 SRE +L L TS + L+ S+ + E ++ + + Sbjct: 690 SREIPEEGLVLGGFTLLELSLPIMALGFTSMMFGLIISSLVKTAEKTMPLLVMF-----A 744 Query: 91 ASRLVIPGLLLFMMFGIG----SYLIQRIPVLNLNHVKPSFKRVSLRE 134 ++V G L + IG S+L+ + + F R+S E Sbjct: 745 IIQVVFTGCLFTLHGSIGVNQFSFLMPSRWAVAASGATLDFNRISPPE 792 >gi|24584786|ref|NP_724039.1| gustatory receptor 36b [Drosophila melanogaster] gi|47116955|sp|Q9VJF2|GR36B_DROME RecName: Full=Putative gustatory receptor 36b gi|22946699|gb|AAF53597.2| gustatory receptor 36b [Drosophila melanogaster] Length = 391 Score = 36.3 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 63/181 (34%), Gaps = 19/181 (10%) Query: 55 IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYLIQ 113 IY+ +++ +L+ ++++F + +++ GL ++ + + + +Q Sbjct: 41 IYAFMANIFILITIIYNFTAHGDTNLLFQSANKLHEYVIIIMSGLKIVAGLITVLNRWLQ 100 Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173 R ++ L ++ + +KS ++ ++ E Sbjct: 101 RGQMMQLVKDVIRLYMINPQ---------------LKSMIRWGILLKAFISFAIELLQVT 145 Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIA---TLTVLDIGWSYHQWYSKLKMSKQEIK 230 L + + V+ + I+ L +L I Y +KL+M +E + Sbjct: 146 LSVDALDRQGTAEMMGLLVKLCVSFIMNLAISQHFLVILLIRAQYRIMNAKLRMVIEESR 205 Query: 231 D 231 Sbjct: 206 R 206 >gi|301754031|ref|XP_002912876.1| PREDICTED: c-C chemokine receptor type 1-like [Ailuropoda melanoleuca] Length = 495 Score = 36.3 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 71/208 (34%), Gaps = 17/208 (8%) Query: 34 ASLFSSILACLIYLLFF----------FSPGIYSVTSDLHVL-LASATQRKLEDISHIVF 82 +L S L L L F+ F G + S L+ L S + Sbjct: 214 LNLAISDLLFLFTLPFWIDYKLKDDWVFRDGTCKLLSGLYYTGLYSEIFFIVLLTVDRYL 273 Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 + H + + ++ + G ++ IP + + + R ++ Sbjct: 274 AIVHAVFALRVRTVIFGVISSVGAWGLAILASIPGFYFSKTQRELSHTTCSLHFPR-GNL 332 Query: 143 NNLVNFMKSFVKIILVGTII-TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201 F +K+ ++G ++ + + +Y ++ + P+ A + ++I+ L Sbjct: 333 KGWKQF--QALKLNMLGLVLPLLVMIISYTEIIRILLKRPNEKKAKAVRLIFVIMIVFFL 390 Query: 202 FIAT--LTVLDIGWSYHQWYSKLKMSKQ 227 F L VL + + + + SKQ Sbjct: 391 FWTPYNLAVLVSAFQDSLFTDECRQSKQ 418 >gi|297488033|ref|XP_002696651.1| PREDICTED: transient receptor potential cation channel, subfamily M, member 6-like [Bos taurus] gi|296475498|gb|DAA17613.1| transient receptor potential cation channel, subfamily M, member 6-like [Bos taurus] Length = 1670 Score = 36.3 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 246 QKSIARSRIRH----KMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ + + ++ + +++ P ++ L Y++ E PV+V G A Sbjct: 292 RRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVVCDGSG-RA 350 Query: 301 KKMRKIAYEH 310 + A+++ Sbjct: 351 SDILSFAHKY 360 >gi|15893519|ref|NP_346868.1| permease [Clostridium acetobutylicum ATCC 824] gi|15023060|gb|AAK78208.1|AE007535_10 Predicted permease [Clostridium acetobutylicum ATCC 824] gi|325507637|gb|ADZ19273.1| permease [Clostridium acetobutylicum EA 2018] Length = 634 Score = 36.3 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 23/194 (11%) Query: 19 IEDALNEGNAP------ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQR 72 + A + +S+E + + + I ++ F GI + + Sbjct: 80 LTKARKK-EFATYMLLGMSKEQVAWLNFIENFIIMIVAFLTGII-FGVVFNKVFVMLLFA 137 Query: 73 KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSL 132 + VF + + S +V L++F++ + SYLI L + Sbjct: 138 LMRTAGRAVFQFSFKAFEISSIV--FLVIFLIISLQSYLIICKSKL--------IDMFNA 187 Query: 133 REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192 + I++ I + + + S + +I +G I++ + + IS P ++L + T+ Sbjct: 188 AKKIEKGLKI-SFITLVMSIIAVICIGYGYYIAIKK----LGYKISLAPEAVLLISVGTI 242 Query: 193 RKVLIMILLFIATL 206 +I + I + Sbjct: 243 LFFSAIIAVAIDLM 256 >gi|307700600|ref|ZP_07637632.1| putative membrane protein [Mobiluncus mulieris FB024-16] gi|307614245|gb|EFN93482.1| putative membrane protein [Mobiluncus mulieris FB024-16] Length = 458 Score = 36.3 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 61/184 (33%), Gaps = 9/184 (4%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 +L ++I + L FF G + LL + + + ++ + A Sbjct: 240 LNLVAAIFISVFCLFFFLKDG-RRIWVWFMRLLPVPFREPVHEAGIRGWITLKGYIKAQA 298 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV-----NF 148 +V +F+ IG+ + + + G +I LV Sbjct: 299 MVAGVDAVFI--SIGAAFLGAGSMTIPLALLIFLASFIPIVGAVSTGAIAVLVILLDQGL 356 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 +K+ + ++++ + + +L + N H ++ TV I+ + + + Sbjct: 357 VKAIIMLVVILAV-QQIESNVLQPLLMSNAVNIHPLVVLLAITVGGYFASIIGALLAVPI 415 Query: 209 LDIG 212 + Sbjct: 416 VAFL 419 >gi|291532904|emb|CBL06017.1| Phosphate/sulphate permeases [Megamonas hypermegale ART12/1] Length = 333 Score = 36.3 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 3/119 (2%) Query: 26 GNAPISREASLFSSILACLIYLLFF--FSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83 G+ S E I+A LI + + F+ I +S H L+ L I Sbjct: 69 GDIVKSAEHIDEHIIVAALIGAIVWNLFTWWIAMPSSSSHALVGGIIGAVLVSTGAIGLN 128 Query: 84 LTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 + L++ P + + + F I + + + FKR+ + +S Sbjct: 129 FWGIGKIVLSLILSPIIAIVVGFIIMNIFYLLFGKFRPSSLNNKFKRMQIITAATMAFS 187 >gi|239625416|ref|ZP_04668447.1| H(/)-transporting two-sector ATPase [Clostridiales bacterium 1_7_47_FAA] gi|239519646|gb|EEQ59512.1| H(/)-transporting two-sector ATPase [Clostridiales bacterium 1_7_47FAA] Length = 430 Score = 36.3 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 74/223 (33%), Gaps = 33/223 (14%) Query: 30 ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89 S E + I+A + I + + + + L + V + +++ Sbjct: 2 KSIEKQSPARIIALGFLAVILTGSFILMLPACVKPGVDLHYVDALFTSTSAVCVTGLIAV 61 Query: 90 SASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144 + LL + G+G + +L L +R+ ++E + + S Sbjct: 62 DTADTFTAIGQTVVALLIQVGGLGVTSVGVGVILALGRRVNLKERLLIKEAL-NLDSGKG 120 Query: 145 LVNFMKSFVKIIL----VGTII-TISLTENYFTMLDFISANPHSILY------------- 186 LV +K+ +K+ L G ++ + + +Y + + HS+ Sbjct: 121 LVCLVKNVLKVTLCFEGAGVVLSYLVFSRDYPPIRALGISLFHSVAAFNNSGFDILGGLK 180 Query: 187 -------HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 + ++I + L ++DI + + KL Sbjct: 181 NLTGYKDDVLLNLTTAGLIIFGGLGFLVIMDIF--RKRSFKKL 221 >gi|118382644|ref|XP_001024478.1| hypothetical protein TTHERM_00298440 [Tetrahymena thermophila] gi|89306245|gb|EAS04233.1| hypothetical protein TTHERM_00298440 [Tetrahymena thermophila SB210] Length = 395 Score = 36.3 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 18/189 (9%) Query: 34 ASLFSSILACLIYLLFF--FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 ++ S+ ++ +L + + + + S + + F + Sbjct: 151 LAIAGSVFMGVMSMLNTNNSDDDQAQMLIGILLTVFSFFTFATQMVVEEKFFSQYYLHPF 210 Query: 92 SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 + I G + I + IPV N P+ + +++S+ NLV F Sbjct: 211 QGVGIEGFWGIGITSIAIAIFNFIPVPNNFKAPPNGNMEDFPNFMYQVFSMQNLVLFFTF 270 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 F II++ + ++L ++ +A VR +L + F+ L + Sbjct: 271 FAYIIVILFVNGLAL----------------TVTKYASCIVRSLLNITSPFLVWAFCLAV 314 Query: 212 GWSYHQWYS 220 W QW+ Sbjct: 315 KWESFQWFQ 323 >gi|16804391|ref|NP_465876.1| hypothetical protein lmo2353 [Listeria monocytogenes EGD-e] gi|224503517|ref|ZP_03671824.1| hypothetical protein LmonFR_13592 [Listeria monocytogenes FSL R2-561] gi|254831222|ref|ZP_05235877.1| hypothetical protein Lmon1_07687 [Listeria monocytogenes 10403S] gi|255029795|ref|ZP_05301746.1| hypothetical protein LmonL_13354 [Listeria monocytogenes LO28] gi|16411841|emb|CAD00431.1| lmo2353 [Listeria monocytogenes EGD-e] Length = 650 Score = 36.3 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%) Query: 35 SLFSSILACLIYLLFFFSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 FS + A +LL + ++ S L ++L ++ + L+ L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAILSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFMK 150 +V + + + + S + + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVH--SFSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV---- 285 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + I+ F + + IL F Sbjct: 286 ----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333 >gi|47096051|ref|ZP_00233653.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes str. 1/2a F6854] gi|254826822|ref|ZP_05231509.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL N3-165] gi|254901121|ref|ZP_05261045.1| hypothetical protein LmonJ_14943 [Listeria monocytogenes J0161] gi|254914029|ref|ZP_05264041.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes J2818] gi|254938344|ref|ZP_05270041.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes F6900] gi|47015648|gb|EAL06579.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes str. 1/2a F6854] gi|258599200|gb|EEW12525.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes FSL N3-165] gi|258610956|gb|EEW23564.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes F6900] gi|293592047|gb|EFG00382.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes J2818] Length = 650 Score = 36.3 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%) Query: 35 SLFSSILACLIYLLFFFSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 FS + A +LL + ++ S L ++L ++ + L+ L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAILSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFMK 150 +V + + + + S + + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVH--SFSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV---- 285 Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + I+ F + + IL F Sbjct: 286 ----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333 >gi|332262623|ref|XP_003280361.1| PREDICTED: transient receptor potential cation channel subfamily M member 1 isoform 2 [Nomascus leucogenys] Length = 1625 Score = 36.3 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ E PV++ G Sbjct: 245 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVICDGS 304 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 305 G-RASDILSFAHKY 317 >gi|260558950|ref|ZP_05831137.1| PTS system protein [Enterococcus faecium C68] gi|293559791|ref|ZP_06676311.1| pts system fructose-specific eiibbc component [Enterococcus faecium E1162] gi|314950208|ref|ZP_07853493.1| phosphotransferase system, EIIC [Enterococcus faecium TX0082] gi|260075058|gb|EEW63373.1| PTS system protein [Enterococcus faecium C68] gi|291606274|gb|EFF35688.1| pts system fructose-specific eiibbc component [Enterococcus faecium E1162] gi|313643518|gb|EFS08098.1| phosphotransferase system, EIIC [Enterococcus faecium TX0082] Length = 487 Score = 36.3 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 4/173 (2%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96 + ++ + F GIYS D A+A K D + + ++ L+ + + Sbjct: 144 FVVAGGVLIAISFAVWGIYSSDPDHAQYNATAAMVKAVDDAAMGMMVPVLAAYIAEGIAK 203 Query: 97 -PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 PGL++ + GI + + + + + + + I ++ +K+ V Sbjct: 204 RPGLVVGFVGGIVAMNGGTGFLGGILAGFLAGYFILFLQKLLIILPKQ--LDGLKAIVLY 261 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 ++G + + I+ S L ++ VL +I+ + + Sbjct: 262 PVIGVAFIGIVMSLLAGPMKAINEGMMSFLAGFEYSNPLVLGVIVGCMCAFDM 314 >gi|317127229|ref|YP_004093511.1| glycerophosphoryl diester phosphodiesterase [Bacillus cellulosilyticus DSM 2522] gi|315472177|gb|ADU28780.1| glycerophosphoryl diester phosphodiesterase [Bacillus cellulosilyticus DSM 2522] Length = 604 Score = 35.9 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 23/186 (12%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 S ++ F F P I + + + L+ + + E + I L + Sbjct: 20 LSFAFIYMLLTSFLFVPLISYIFNRMIKLMGTGSLLNAE-VYKIGSSFPGLMGMLLISFL 78 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 L+LF+ FG+ + Q+ KRIY L+ M+ F KI+ Sbjct: 79 VSLILFLEFGVMILIAQQGYF------------------RKRIYVSQALITTMRKFPKIL 120 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL----IMILLFIATLTVLDIG 212 G I +T + ++ A F ++ + I +++ + + Sbjct: 121 GFGLFQIILITLLFIPFIELSVFPALLDFNIAIFLTSQLYGSSDLAIFIYLLIVILAIYL 180 Query: 213 WSYHQW 218 + + Sbjct: 181 FIRFLF 186 >gi|269986885|gb|EEZ93162.1| hypothetical protein BJBARM4_0254 [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 744 Score = 35.9 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 21/218 (9%) Query: 29 PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE-DISHIVFLLTHL 87 S + F +I+ +I+ + + S + + A T L D + F L Sbjct: 44 ANSPMYAGFFAIVMFIIFAIALDRTQLSSGRISISFIFALITFFILYTDPVLLHFFLNAF 103 Query: 88 SLSASRLVIPGLLLFM-------MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140 + A ++ G+L+ + + G+ L + + + + I Sbjct: 104 IVLAFIALVLGMLVLVKSPRSIKLIGLLIVLFLLMVLF-----ENDTSLTNSINSTLHI- 157 Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLD----FISANPHSILYHAFFTVRK-- 194 S+ N++ F+ + +++ ++ + + T + FI ++L F Sbjct: 158 SLLNILPFVFGMIAVLIFAVLLIKGIRNSRNTAVRVALLFIVFLMITLLIPGFAGFLFNP 217 Query: 195 -VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 VL I + I V+ + K+ KQ IKD Sbjct: 218 IVLTAIFVAIILAAVIYSQFGKIGRIKPSKLDKQYIKD 255 >gi|148675314|gb|EDL07261.1| mCG11829, isoform CRA_a [Mus musculus] Length = 525 Score = 35.9 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 136 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 195 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 196 G-RASDILSFAHKY 208 >gi|325973369|ref|YP_004250433.1| hypothetical protein MSU_0519 [Mycoplasma suis str. Illinois] gi|323651971|gb|ADX98053.1| hypothetical protein MSU_0519 [Mycoplasma suis str. Illinois] Length = 165 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 8/165 (4%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 ++ +++ D S ++L T L + L IP + L +++ + S+ P ++ + Sbjct: 1 MIFFNNGQQMIDNSGDIYLATRLLMMFYWLTIPSIALILIWSLYSF-----PKMDWSKNF 55 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184 PSF R I+ L + + IL+ +L N Sbjct: 56 PSFSRFFPYLKNLSIFGWVILGTLI--LINTILLVFYAIDTLALNNVDKYAVYWKYKVQE 113 Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229 F ++ IL +I + + W + + SKL +S +++ Sbjct: 114 RPVLSFFAVTIMGFILYWILAIVCYNTFWEKY-FNSKLNLSLKDL 157 >gi|301777500|ref|XP_002924168.1| PREDICTED: transient receptor potential cation channel subfamily M member 1-like [Ailuropoda melanoleuca] Length = 1682 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 294 EVKLRRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 353 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 354 G-RASDILSFAHKY 366 >gi|282909461|ref|ZP_06317276.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958928|ref|ZP_06376373.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus A017934/97] gi|282326731|gb|EFB57029.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789646|gb|EFC28469.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 363 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 14/211 (6%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +GN S L + +I +L + +Y + S + ++ ++ Q D +H+V Sbjct: 109 AFKKGNYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLV 165 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 + +V+ + + + + + L G K + + Sbjct: 166 GIAITTQSIIIIVVLLIKAIITWLLLIPIF---NFMTSFVESTNDKVKTHLANGFKAMKN 222 Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199 K+F K + ++ + + + IS N S+ + +V +I I Sbjct: 223 GQ------KTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITI 276 Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 +LF+ V+ +G + K++K ++K Sbjct: 277 ILFVVIHAVILMGIVQYYLKRGQKITKDKVK 307 >gi|281341976|gb|EFB17560.1| hypothetical protein PANDA_013444 [Ailuropoda melanoleuca] Length = 1606 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 218 EVKLRRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 277 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 278 G-RASDILSFAHKY 290 >gi|229170433|ref|ZP_04298102.1| hypothetical protein bcere0007_53600 [Bacillus cereus AH621] gi|228613057|gb|EEK70213.1| hypothetical protein bcere0007_53600 [Bacillus cereus AH621] Length = 490 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 28/214 (13%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+FS +++ I++ F S ++A ++ + F ++ S Sbjct: 10 LSIFSLLVSTAIFIQVFTSHSRRYFKKFYGGIIA---------VTLMFFSFPYMGFSYDL 60 Query: 94 LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146 V+P +L F+ FG + S +I RI + P + + L Sbjct: 61 RVVPLILSFIYFGRIAGWITLISIIIMRIFYIGGYWEPPVIAYL----------GMGILF 110 Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 K++ K + + S+ ++ + +LI + L A Sbjct: 111 TTFKTYFKNVNPFKSASLYFSVFVGIKWLVGVFFNTTLLYTQGLLYIALGLLIGLFLMEA 170 Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238 + + + KLK SKQE+ D + + G Sbjct: 171 YQRLYYLTQDLSKMNRKLKKSKQELTDTVHELQG 204 >gi|229172057|ref|ZP_04299622.1| H(+)-transporting two-sector ATPase [Bacillus cereus MM3] gi|228611400|gb|EEK68657.1| H(+)-transporting two-sector ATPase [Bacillus cereus MM3] Length = 449 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 69/209 (33%), Gaps = 23/209 (11%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + +LA ++ ++ P + S + A + +S + +S + + Sbjct: 16 LIVLFYLLAVVVSVILLSFPFV--TKSGVKWTFIDALFTSVSAVSVTGLSVVTISDTFTT 73 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 I L L + G + V + K +R L +++ LV M+S + Sbjct: 74 AGIIMLALILQLGGLGIMALGTFVWIITGKKIGLQRRRLIMADHNQGNLSGLVELMRSIL 133 Query: 154 KII----LVGTIITISLTENYFTMLDF-----------------ISANPHSILYHAFFTV 192 +I L+G I+ + YF S++ + + Sbjct: 134 IVIISIELIGAILLGTRFLLYFPTWQEAYFHGFFAAVSATTNGGFDLTGQSLIPYKKDYI 193 Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSK 221 +++ M+L+ + + + + + Sbjct: 194 VQMIHMLLIILGAIGFPVLMEIKQFFSKR 222 >gi|206895371|ref|YP_002247110.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] gi|206737988|gb|ACI17066.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] Length = 406 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 285 ENDAPVLVAK----GQNLIAKKMRKIAYEHNIPIFEEPSLAR 322 + +AP + ++ A +R A +PI E+P LAR Sbjct: 212 KAEAPKISEYLCPACKDHYAHVIRA-AKLFGVPIVEDPQLAR 252 >gi|126180096|ref|YP_001048061.1| abortive infection protein [Methanoculleus marisnigri JR1] gi|125862890|gb|ABN58079.1| Abortive infection protein [Methanoculleus marisnigri JR1] Length = 296 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 35/208 (16%) Query: 29 PIS-----REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE-------- 75 P S RE ++F + L + +FF+ + + L + + + Sbjct: 12 PRSPSTARREVTVFLVLAFALSSIGWFFTTRSTAAEALLLSTVFTMWCPGIAAVVTRLYY 71 Query: 76 --DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSL 132 ++ F + + +P L+ ++FG I N F Sbjct: 72 QRNLGGFGFRVGKTRWQMVAIFLPILVGLLIFGPV--WATGIGPFNPESAATVFSIGFIP 129 Query: 133 REGIKRIYSI----------NNLV--NFMK--SFVKIILVGTIITISLTENYFTMLDFIS 178 + I+S+ L+ K F K+ L+ + I +F ++ F Sbjct: 130 VFLVSIIFSLFAAAGEEIGWRGLLVPEMAKFMGFTKLALLSSAIWAVW---HFPLIIFSD 186 Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATL 206 + L+++ ++ +A L Sbjct: 187 YHGAGPLWYSLAVFVPSVMGAGFILAWL 214 >gi|311692959|gb|ADP95832.1| sensory box/FOG: EAL domain/GGDEF domain containing protein [marine bacterium HP15] Length = 1162 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 18/203 (8%) Query: 28 APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87 P+S++ +L ++ LI F + V+ + ++ ++ + +S +V + Sbjct: 39 VPVSQDLTLAEAV--GLILAGFTLGVMVLGVSKPVRLVFSAVL--LIYSLSSLVQSVNIF 94 Query: 88 SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS-INNL- 145 +S + GLL M I + + ++ G I + + L Sbjct: 95 GVSGLFSIKVGLLPLMPAAIATLAGICCALGLTRRTLILWRLFGSIAGTVGILAILQGLG 154 Query: 146 VNFMKSFVKI-----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 V+ S ++I G + I++ + + I S+ Y A + + Sbjct: 155 VSSFPSILQIPADQASFTGALFAIAIGVIAWMLARSIDRPAISLPYSAIGIGISGTLATV 214 Query: 201 LFIATLTVLDIGWSYHQWYSKLK 223 + + + +D + +LK Sbjct: 215 ILM-CVASID------RHEERLK 230 >gi|62432663|gb|AAX82900.1| melanocortin-1 receptor [Gorilla gorilla] Length = 316 Score = 35.9 bits (82), Expect = 8.4, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSL 89 + SS+L+ L +L S+ L +R + I L + L + Sbjct: 120 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYRSIVTLPRARRAVAAIWVASVLFSTLFI 179 Query: 90 S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 + LV+ L + ++ + + + + KR + + + Sbjct: 180 AYYDHTAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HKGFGL 236 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 237 KGPVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 288 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 289 NAIIDPLIYAF----HSQELRRTLKEV 311 >gi|332863420|ref|XP_510268.3| PREDICTED: transient receptor potential cation channel subfamily M member 1 isoform 4 [Pan troglodytes] Length = 1533 Score = 35.9 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|228907050|ref|ZP_04070914.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL 200] gi|228852554|gb|EEM97344.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL 200] Length = 449 Score = 35.9 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 68/209 (32%), Gaps = 23/209 (11%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + +LA ++ ++ P + + A + +S + +S + + Sbjct: 16 LIVLFYLLAVVVSVILLSLPFV--TKPSVKWTFIDALFTSVSAVSVTGLSVITISDTFTT 73 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 I L L + G + V + K +R L +++ LV M+S + Sbjct: 74 AGIIVLALILQLGGLGIMALGTFVWIITGKKIGLQRRRLIMADHNQGNLSGLVELMRSIL 133 Query: 154 KII----LVGTIITISLTENYFTMLDF-----------------ISANPHSILYHAFFTV 192 +I L+G I+ + YF S++ + + Sbjct: 134 IVIISIELIGAILLGTRFSLYFPTWQEAYFHGFFAAVSATTNGGFDLTGQSLIPYKKDYI 193 Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSK 221 +++ M+L+ + + + + + Sbjct: 194 VQMIHMLLIILGAIGFPVLMEVKQFFSKR 222 >gi|169881259|ref|NP_061222.3| transient receptor potential cation channel subfamily M member 1 isoform 1 [Mus musculus] Length = 542 Score = 35.9 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|110680148|ref|YP_683155.1| hypothetical protein RD1_2948 [Roseobacter denitrificans OCh 114] gi|109456264|gb|ABG32469.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 503 Score = 35.9 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 64/198 (32%), Gaps = 5/198 (2%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 + S +LA + Y F + + V A+ ++ L+++A Sbjct: 55 DPSAALILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGFPMARQGKAGKALTIAAI 114 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152 G + ++ + + ++ + +L + + G+ I + K+ Sbjct: 115 ASFAGGTIGAILLMVFAPMLSSVALLFHSAEYFALM----VVGLSAIAAFAGTGQVAKAI 170 Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212 + + ++G I+ F M F F T+ + + + + Sbjct: 171 M-MTVLGLIMATVGEGALFNMPRFTMGLMDLQSGFGFITLAMAMFALPEALFLVLKPRQS 229 Query: 213 WSYHQWYSKLKMSKQEIK 230 L++++QE + Sbjct: 230 KESDGDIKDLRITRQEAR 247 >gi|313207221|ref|YP_004046398.1| amino acid/peptide transporter [Riemerella anatipestifer DSM 15868] gi|312446537|gb|ADQ82892.1| amino acid/peptide transporter [Riemerella anatipestifer DSM 15868] Length = 557 Score = 35.9 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 74/201 (36%), Gaps = 18/201 (8%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 ++ +F + L +I FF P I ++ +L+ + + +I ++ ++ Sbjct: 110 KDMPMFYTSLGLIIIGNGFFKPSISTLLGNLYS--EEPYKANKDAGYNIFYMGINIGAFV 167 Query: 92 SRLVIPGLL-------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR-EGIKRIYSIN 143 ++ + F+ G+G +L I L H+ + + EG +I +I Sbjct: 168 CNIIAAFMRNKFGWGEAFITAGVGMFLGLIIFSLGRKHIL-NANILKPVQEGDTKISAI- 225 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANPHSILYHAFFTVRKVLIMILL 201 K F+ ILVG + + + + FI A I+++ ++ Sbjct: 226 ----LTKVFLPAILVGVLGWVIPGNIFGADSTDAFIFACIPVIIFYVSLYIKANKEDKAP 281 Query: 202 FIATLTVLDIGWSYHQWYSKL 222 A L + + + + + Sbjct: 282 IGALLAIFAVSLMFWAVFKQN 302 >gi|239833374|ref|ZP_04681702.1| formate dehydrogenase, gamma subunit [Ochrobactrum intermedium LMG 3301] gi|239821437|gb|EEQ93006.1| formate dehydrogenase, gamma subunit [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 35.9 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 19/111 (17%) Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 LV + S + +IL+ + + + YF I+ ++ H+ V + + I+ Sbjct: 129 QKLVFWSMSLLIVILI--VSGLMIWNEYFGSYTSINQQRWALFVHSMAAVAAICVWIVHV 186 Query: 203 IATL-----------TVLDIGWSYHQWYSKLKMSKQEI--KDEIKQSYGNP 240 A + + GW++ L+ E+ K + KQ G P Sbjct: 187 YAAIWVKGTIHAMTRGTVTGGWAWRHHRKWLR----ELTSKQKAKQGSGKP 233 >gi|169600765|ref|XP_001793805.1| hypothetical protein SNOG_03231 [Phaeosphaeria nodorum SN15] gi|160705509|gb|EAT89962.2| hypothetical protein SNOG_03231 [Phaeosphaeria nodorum SN15] Length = 845 Score = 35.9 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%) Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS---------FVKIILVGTII 162 + + R+ R + R S+ LV S + +LVG + Sbjct: 703 FMWLAGFAAPFLVWGLSRMFPRVSLIRKISMP-LVFGCMSYVPPYSPMNILSWVLVGYVF 761 Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222 + Y + + L + +L+ + + + D W L Sbjct: 762 NKWIRNKYRGWWMQYNYITSAALDVGLA-LCNILLFFCVLLPGAAMPDY-WGTTWVAETL 819 Query: 223 KMSKQEIK 230 MS+Q ++ Sbjct: 820 DMSQQAVR 827 >gi|293375190|ref|ZP_06621476.1| potassium uptake protein, TrkH family [Turicibacter sanguinis PC909] gi|292646170|gb|EFF64194.1| potassium uptake protein, TrkH family [Turicibacter sanguinis PC909] Length = 431 Score = 35.9 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 5/169 (2%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S IL + L + + S + L SA+ ++ ++ + T +A Sbjct: 15 LGFMSVILIGSVLLALPIAHMPGTYVSYIDALFTSASAV---TVTGLIAIETAEQFNAFG 71 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 ++ LL + G+G + I +L + + R+ L EG+ S++ +V +KS + Sbjct: 72 RLV-IALLIQIGGLGVTSVGAIFILVMQRKFGVYHRLLLMEGL-NFNSLSGVVRLVKSVL 129 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 ++ LV ++ + L+ F +HA + IL Sbjct: 130 QLTLVIELVGMILSFFTFIQHYPFWEALGISAFHAIASFNNAGFDILGG 178 >gi|3047242|gb|AAC13683.1| melastatin [Mus musculus] Length = 542 Score = 35.9 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|124024237|ref|YP_001018544.1| hypothetical protein P9303_25481 [Prochlorococcus marinus str. MIT 9303] gi|123964523|gb|ABM79279.1| Hypothetical protein P9303_25481 [Prochlorococcus marinus str. MIT 9303] Length = 509 Score = 35.9 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 17/193 (8%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL----------- 84 F+ L+ + +S +YSV D V+ Sbjct: 19 AFALKALLLVDVTSLWSDELYSVGKSFQPSFRDLLAMLRNDTHPPVYYSLLWFWGQSVGQ 78 Query: 85 THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144 ++L + GL +M L Q V + ++ Y + Sbjct: 79 NAVTLRLLSWLAYGLGGIVMVFQAGALAQARGVSRGRSLC-----LAALLAFCSPYPVRF 133 Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204 + KS+ ++L + ++ +LY + + LF+ Sbjct: 134 AIE-GKSYALLVLFVGLAWWWRRRLLQSVESSTVFARDLLLYGITVCLAALTHFYGLFLF 192 Query: 205 TLTVLDIGWSYHQ 217 + W Sbjct: 193 AVAAAWDLWQQRW 205 >gi|74143427|dbj|BAE28794.1| unnamed protein product [Mus musculus] Length = 828 Score = 35.9 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 328 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 329 G-RASDILSFAHKY 341 >gi|75762377|ref|ZP_00742251.1| Potassium uptake protein ktrB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896350|ref|YP_002444761.1| sodium transporter family protein [Bacillus cereus G9842] gi|228899999|ref|ZP_04064235.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL 4222] gi|228964377|ref|ZP_04125492.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis serovar sotto str. T04001] gi|74490137|gb|EAO53479.1| Potassium uptake protein ktrB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543758|gb|ACK96152.1| sodium transporter family protein [Bacillus cereus G9842] gi|228795317|gb|EEM42808.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis serovar sotto str. T04001] gi|228859613|gb|EEN04037.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL 4222] Length = 449 Score = 35.9 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 69/209 (33%), Gaps = 23/209 (11%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 + +LA ++ ++ P + + + A + +S + +S + + Sbjct: 16 LIVLFYLLAVVVSVILLSFPFV--TKAGVKWTFIDALFTSVSAVSVTGLSVVTISDTFTT 73 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 I L L + G + V + K +R L +++ LV M+S + Sbjct: 74 AGIIMLALILQLGGLGIMALGTFVWIITGKKIGLQRRRLIMADHNQGNLSGLVELMRSIL 133 Query: 154 KII----LVGTIITISLTENYFTMLDF-----------------ISANPHSILYHAFFTV 192 +I L+G I+ + YF S++ + + Sbjct: 134 IVIISIELIGAILLGTRFLLYFPTWQEAYFHGFFAAVSATTNGGFDLTGQSLIPYKKDYI 193 Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSK 221 +++ M+L+ + + + + + Sbjct: 194 VQMIHMLLIILGAIGFPVLMEVKQFFSKR 222 >gi|332236514|ref|XP_003267445.1| PREDICTED: transient receptor potential cation channel subfamily M member 3 isoform 1 [Nomascus leucogenys] Length = 574 Score = 35.9 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +I+ P ++ L Y++ PV+V G Sbjct: 306 EVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGS 365 Query: 297 NLIAKKMRKIAYEH 310 A + +++ Sbjct: 366 G-RASDILAFGHKY 378 >gi|62432665|gb|AAX82901.1| melanocortin-1 receptor [Gorilla gorilla] Length = 316 Score = 35.9 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSL 89 + SS+L+ L +L S+ L +R + I L + L + Sbjct: 120 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYRSIVTLPRARRAVAAIWVASVLFSTLFI 179 Query: 90 S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 + LV+ L + ++ + + + + KR + + + Sbjct: 180 AYYDHTAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HKGFGL 236 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 237 KGPVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 288 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 289 NAIIDPLIYAF----HSQELRRTLKEV 311 >gi|53726173|ref|YP_103939.1| preprotein translocase subunit SecF [Burkholderia mallei ATCC 23344] gi|121601113|ref|YP_991651.1| preprotein translocase subunit SecF [Burkholderia mallei SAVP1] gi|124385393|ref|YP_001027147.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC 10229] gi|126451077|ref|YP_001082096.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC 10247] gi|167000540|ref|ZP_02266352.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20] gi|238562007|ref|ZP_00441101.2| protein-export membrane protein SecF [Burkholderia mallei GB8 horse 4] gi|254178913|ref|ZP_04885567.1| protein-export membrane protein SecF [Burkholderia mallei ATCC 10399] gi|254207994|ref|ZP_04914344.1| protein-export membrane protein SecF [Burkholderia mallei JHU] gi|254355864|ref|ZP_04972142.1| protein-export membrane protein SecF [Burkholderia mallei 2002721280] gi|52429596|gb|AAU50189.1| protein-export membrane protein SecF [Burkholderia mallei ATCC 23344] gi|121229923|gb|ABM52441.1| protein-export membrane protein SecF [Burkholderia mallei SAVP1] gi|124293413|gb|ABN02682.1| protein-export membrane protein SecF [Burkholderia mallei NCTC 10229] gi|126243947|gb|ABO07040.1| protein-export membrane protein SecF [Burkholderia mallei NCTC 10247] gi|147751888|gb|EDK58955.1| protein-export membrane protein SecF [Burkholderia mallei JHU] gi|148024839|gb|EDK83017.1| protein-export membrane protein SecF [Burkholderia mallei 2002721280] gi|160694827|gb|EDP84835.1| protein-export membrane protein SecF [Burkholderia mallei ATCC 10399] gi|238523481|gb|EEP86919.1| protein-export membrane protein SecF [Burkholderia mallei GB8 horse 4] gi|243063594|gb|EES45780.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20] Length = 313 Score = 35.9 bits (82), Expect = 8.8, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +++G +I +S + + I AN H ++ FF + + + A L VL Sbjct: 138 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 197 Query: 212 GWS---------YHQWYSKLKMSKQEI 229 + + + KM+ QE+ Sbjct: 198 SVNESVVIFDRIRETFRRERKMTVQEV 224 >gi|315022977|gb|EFT35998.1| putative proton-dependent peptide transporter [Riemerella anatipestifer RA-YM] gi|325335332|gb|ADZ11606.1| putative proton dependent di-tripeptide transporter [Riemerella anatipestifer RA-GD] Length = 547 Score = 35.9 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 74/201 (36%), Gaps = 18/201 (8%) Query: 32 REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91 ++ +F + L +I FF P I ++ +L+ + + +I ++ ++ Sbjct: 100 KDMPMFYTSLGLIIIGNGFFKPSISTLLGNLYS--EEPYKANKDAGYNIFYMGINIGAFV 157 Query: 92 SRLVIPGLL-------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR-EGIKRIYSIN 143 ++ + F+ G+G +L I L H+ + + EG +I +I Sbjct: 158 CNIIAAFMRNKFGWGEAFITAGVGMFLGLIIFSLGRKHIL-NANILKPVQEGDTKISAI- 215 Query: 144 NLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANPHSILYHAFFTVRKVLIMILL 201 K F+ ILVG + + + + FI A I+++ ++ Sbjct: 216 ----LTKVFLPAILVGVLGWVIPGNIFGADSTDAFIFACIPVIIFYVSLYIKANKEDKAP 271 Query: 202 FIATLTVLDIGWSYHQWYSKL 222 A L + + + + + Sbjct: 272 IGALLAIFAVSLMFWAVFKQN 292 >gi|299802539|gb|ADJ52078.1| transient receptor potential melastatin family isoform 1 splice variant [Homo sapiens] Length = 1642 Score = 35.9 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 262 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 321 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 322 G-RASDILSFAHKY 334 >gi|45657278|ref|YP_001364.1| phosphoglycerol transferase related protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600516|gb|AAS70001.1| phosphoglycerol transferase related protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 661 Score = 35.9 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 10/182 (5%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 ++IL I + F P + + S + L ++ S + + S ++ +I Sbjct: 1 MATILLEKIRMSRKFPPNLKIILSFTILFLILLITYRI---SFTIVFFSKFSSTSLFEII 57 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 L+ + F + I P L+ + P ++ + I+ +V F + Sbjct: 58 LAFLVGIRFDLSVCAILIGPFWILSTIYP----LNRFRTYSLFWGISPIVLFF--WAASH 111 Query: 157 LVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 L+G ++ T + FI P I++ AFF +L +I + + + + Y Sbjct: 112 LIGDVLYFGETNKHLGYEGFIFLGPEFWIIFKAFFVGHTILAIISCLLIGILLPFTIYQY 171 Query: 216 HQ 217 Q Sbjct: 172 IQ 173 >gi|74201666|dbj|BAE28453.1| unnamed protein product [Mus musculus] Length = 542 Score = 35.9 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|306817796|ref|ZP_07451537.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304649445|gb|EFM46729.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 458 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 61/184 (33%), Gaps = 9/184 (4%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 +L ++I + L FF G + LL + + + ++ + A Sbjct: 240 LNLVAAIFISVFCLFFFLKDG-RRIWVWFMRLLPVPLREPVHEAGIRGWITLKGYIKAQA 298 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV-----NF 148 +V +F+ IG+ + + + G +I LV Sbjct: 299 MVAGVDAVFI--SIGAAFLGAGSMTIPLALLIFLASFIPIVGAVSTGAIAVLVILLDQGL 356 Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 +K+ + ++++ + + +L + N H ++ TV I+ + + + Sbjct: 357 VKAIIMLVVILAV-QQIESNVLQPLLMSNAVNIHPLVVLLAITVGGYFASIIGALLAVPI 415 Query: 209 LDIG 212 + Sbjct: 416 VAFL 419 >gi|302546081|ref|ZP_07298423.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Streptomyces hygroscopicus ATCC 53653] gi|302463699|gb|EFL26792.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Streptomyces himastatinicus ATCC 53653] Length = 351 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 17/127 (13%) Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 V + T+S+ + F++ +Y L L + + IG Sbjct: 57 VALLFTVSMLATVAFIASFVTLPVDKYIYVFPIGHISALNFALGVTLGIALFAIGAGAVH 116 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNR---------------QKSIARSRIRHKMMEAT 262 W L MS EI DE +P +K + ++ +AR+ + + Sbjct: 117 WARTL-MSDVEIADERHPIEADPEVKAKVLDDFRAGAKESGFGRRKLARNTLFGALAL-V 174 Query: 263 SRATIII 269 + +++ Sbjct: 175 PLSGVVL 181 >gi|48428439|sp|Q864K9|MSHR_GORGO RecName: Full=Melanocyte-stimulating hormone receptor; Short=MSH-R; AltName: Full=Melanocortin receptor 1; Short=MC1-R gi|30420770|gb|AAP30962.1| melanocortin-1 receptor [Gorilla gorilla] Length = 316 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 25/207 (12%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSL 89 + SS+L+ L +L S+ L +R + I L + L + Sbjct: 120 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYRSIVTLPRARRAVAAIWVASVLFSTLFI 179 Query: 90 S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142 + LV+ L + ++ + + + + KR + + + Sbjct: 180 AYYDHTAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HKGFGL 236 Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 V IL+G I +F L I P F + + +++ Sbjct: 237 KGPVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 288 Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229 A + L + +L+ + +E+ Sbjct: 289 NAIIDPLIYAF----HSQELRRTLKEV 311 >gi|302873873|ref|YP_003842506.1| hypothetical protein Clocel_0976 [Clostridium cellulovorans 743B] gi|307689880|ref|ZP_07632326.1| hypothetical protein Ccel74_17094 [Clostridium cellulovorans 743B] gi|302576730|gb|ADL50742.1| hypothetical protein Clocel_0976 [Clostridium cellulovorans 743B] Length = 279 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN-------- 147 IP L++ + GI + ++ V KR+ + K +S N LV Sbjct: 9 IPILIVAYIIGILLKHLSIGFGISWTWVANKIKRIFPFK-AKLFFSKNKLVTKDIKVSAK 67 Query: 148 FMKSFVKII 156 ++KS K I Sbjct: 68 YVKSLGKFI 76 >gi|238026271|ref|YP_002910502.1| preprotein translocase subunit SecF [Burkholderia glumae BGR1] gi|237875465|gb|ACR27798.1| Protein export protein SecF [Burkholderia glumae BGR1] Length = 316 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +++G +I +S + + I AN H ++ FF + + + A L VL Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200 Query: 212 GWS---------YHQWYSKLKMSKQEI 229 + + + +M+ QE+ Sbjct: 201 SVNESVVIFDRIRETFRRERRMTVQEV 227 >gi|194468303|ref|ZP_03074289.1| cytochrome d ubiquinol oxidase, subunit II [Lactobacillus reuteri 100-23] gi|194453156|gb|EDX42054.1| cytochrome d ubiquinol oxidase, subunit II [Lactobacillus reuteri 100-23] Length = 338 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 71/191 (37%), Gaps = 21/191 (10%) Query: 37 FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96 + S++ + LL + GI + + + Q + + + ++ + + L++ Sbjct: 159 WLSVVGGIALLLLTYLHGI----NYIALKTTGPVQERARNYAEFLYWILYAGEVVFALLL 214 Query: 97 PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156 + FM +I + +++ + + ++ + LV F+ S + Sbjct: 215 IFMTDFMAVHPVGTIIMLVLIVSFSVL-----------AQVETFAGHELVAFISSGL--T 261 Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYH---AFFTVRKVLIMILLFIATLTVLDIGW 213 LV ++ I + + +L + +SIL + V+ + + + W Sbjct: 262 LVSLVVLIFI-GLFPRVLISSISPKYSILIQNASSTEYTLTVMTIATCCLLPFVLAYTIW 320 Query: 214 SYHQWYSKLKM 224 +Y + ++ M Sbjct: 321 AYWIFRKRIAM 331 >gi|82751434|ref|YP_417175.1| phage-like protein [Staphylococcus aureus RF122] gi|82656965|emb|CAI81402.1| hypothetical phage-related protein [Staphylococcus aureus RF122] Length = 1154 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 69/201 (34%), Gaps = 15/201 (7%) Query: 27 NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82 S+ F S + ++ L+ + G+ + + + + ++ + + I Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592 Query: 83 LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP--SFKRVSLREGIKRIY 140 L +A + + L+ + + ++ I L + ++ + L I Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIAPILATIDFLGVFGIRLFALVSKFGLLRAGLTI- 651 Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 + +K +KII V + + F + I ++ + I+I Sbjct: 652 -LKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAVTGLVTVFGILGGPITIVIG 703 Query: 201 LFIATLTVLDIGWSYHQWYSK 221 + A + + + W+ ++ + Sbjct: 704 VIAALIAIFVLLWNKNEGFRN 724 >gi|268555248|ref|XP_002635612.1| C. briggsae CBR-SRAB-16 protein [Caenorhabditis briggsae] gi|187022274|emb|CAP38518.1| CBR-SRAB-16 protein [Caenorhabditis briggsae AF16] Length = 324 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 65/190 (34%), Gaps = 21/190 (11%) Query: 41 LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100 L C++ L F G + +A + S + L +IP + Sbjct: 139 LGCMLILGQIFMGGATTFAIFYKFDFQNAQEFCTGSQSSDPYFL----------IIPEAV 188 Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160 + + Q ++++N + +I N+VN +++F K + Sbjct: 189 AILSNVLA--FFQFGRLMSINRKIRVGSSSNNLSQKYQIEENLNVVNILRAFTKCDFIFI 246 Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220 +I ++ + + + + + L+ + + + +L + + + + Sbjct: 247 LIYFTMGIPFHLIGKHMDSAEYYALFEVIY---------FVPLYSLIMPAYIYRFSRKQR 297 Query: 221 KLKMSKQEIK 230 +M++ E K Sbjct: 298 DERMTRMERK 307 >gi|315169309|gb|EFU13326.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1341] Length = 683 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A + +E + + +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLIFVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQAFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|315148183|gb|EFT92199.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4244] Length = 687 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 65 LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124 A + +E + + +L++ A + ++L ++ I LI P++ L Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLIFVFPIIALVSFF 300 Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182 P + + + F KS + I+ + + I L+ ++ ++D Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQAFLGLM 346 Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223 + + V + +L + ++ I W S+ K Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387 >gi|299802537|gb|ADJ52077.1| transient receptor potential melastatin family isoform 1 splice variant [Homo sapiens] Length = 1625 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 245 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 304 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 305 G-RASDILSFAHKY 317 >gi|291440117|ref|ZP_06579507.1| Rieske iron-sulfur protein [Streptomyces ghanaensis ATCC 14672] gi|291343012|gb|EFE69968.1| Rieske iron-sulfur protein [Streptomyces ghanaensis ATCC 14672] Length = 352 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%) Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 V + T+S+ + F++ I+Y L + L + + IG Sbjct: 58 VALLFTVSMLATIGFIASFVAIPVDKIVYIFPLGHIGALNLALGVTLGIALFAIGAGAVH 117 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQ----KSIARSRIRHK 257 W L MS +E+ DE P ++ + + A+ + Sbjct: 118 WARTL-MSDEELTDERHPIEAPPEVRTKVMDDFRQGAKESAIGR 160 >gi|239629012|ref|ZP_04672043.1| conserved membrane-spanning protein [Clostridiales bacterium 1_7_47_FAA] gi|239519158|gb|EEQ59024.1| conserved membrane-spanning protein [Clostridiales bacterium 1_7_47FAA] Length = 606 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 21/170 (12%) Query: 47 LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL-SLSASRLVIPGLLLFMMF 105 L+F+ + +V S L A L + LT L + V + + Sbjct: 346 LIFWGTWLFSAVVSWQFFLPAIGISTALFPVQSKQGTLTWLFPQKMTNFVWVWAIFNAIV 405 Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIIT- 163 G+ + + + N V P ++ I + +KS + V Sbjct: 406 GLVLFWLSYRFNGSKNGVTPK------------MWGIKTSGKELLKSLLLTFTVCACFFS 453 Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 + NYF ++DF I A + + I+ + A + Sbjct: 454 VVFLANYFFVVDF------RIWVLAIKVFKPIHIIYAVTYAVMFFPYYFM 497 >gi|228940659|ref|ZP_04103224.1| Amino acid transporter [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973578|ref|ZP_04134161.1| Amino acid transporter [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980136|ref|ZP_04140451.1| Amino acid transporter [Bacillus thuringiensis Bt407] gi|228779618|gb|EEM27870.1| Amino acid transporter [Bacillus thuringiensis Bt407] gi|228786165|gb|EEM34161.1| Amino acid transporter [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819038|gb|EEM65098.1| Amino acid transporter [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941292|gb|AEA17188.1| amino acid permease [Bacillus thuringiensis serovar chinensis CT-43] Length = 460 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 5/139 (3%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSD-LHVLLASATQRKLEDISHIVFLLTHLSLSA 91 + + L+ +F F YS++ D L S+ ++L+ ++ L+ Sbjct: 301 SVGAIAGLTTVLLVAMFAFVRVSYSMSRDGLLPKRLSSVHKRLQTPFFNTWITGILAALL 360 Query: 92 SRLVIPGLL--LFMMFGIGSYLIQRIPVLNLNHVKPSFKR--VSLREGIKRIYSINNLVN 147 + LV LL L M I +++ I V+ L P KR + I SI + + Sbjct: 361 AGLVDLNLLANLVNMGTITAFVFVSIAVIVLRKTHPDMKRPFRAPLVPFLPIVSIVSCIY 420 Query: 148 FMKSFVKIILVGTIITISL 166 + K+ L+ + I + Sbjct: 421 LALNLSKLTLISFVAWIII 439 >gi|215416002|dbj|BAG85193.1| melanocortin-1 receptor [Mus platythrix] Length = 315 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 69/194 (35%), Gaps = 14/194 (7%) Query: 36 LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95 F ++A Y+ F++ +S+ + V A + +S +F+ + + + Sbjct: 131 SFLGVIAIDRYISIFYALRYHSIVTLPRVRWAVVGIWMVSTVSSTLFITYYKHTAVLLCL 190 Query: 96 IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 + L M + L + H + + + KR + I +K + Sbjct: 191 VTFFL--AMLALMVILYTHMFTRAYQHAQ------GIAQLHKRQWPIRQGF-CLKGAATL 241 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 ++ I + +F L I P F + +++++ + + L + Sbjct: 242 TILLGIFFLC-WGPFFLHLLLIVLCPQHPTCSCIFKNFNLFLILIILSSIVDPLIYAFR- 299 Query: 216 HQWYSKLKMSKQEI 229 +L+M+ +E+ Sbjct: 300 ---SQELRMTLKEV 310 >gi|83719393|ref|YP_441822.1| preprotein translocase subunit SecF [Burkholderia thailandensis E264] gi|167580647|ref|ZP_02373521.1| preprotein translocase subunit SecF [Burkholderia thailandensis TXDOH] gi|167618751|ref|ZP_02387382.1| preprotein translocase subunit SecF [Burkholderia thailandensis Bt4] gi|257137991|ref|ZP_05586253.1| preprotein translocase subunit SecF [Burkholderia thailandensis E264] gi|83653218|gb|ABC37281.1| protein-export membrane protein SecF [Burkholderia thailandensis E264] Length = 316 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +++G +I +S + + I AN H ++ FF + + + A L VL Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200 Query: 212 GWS---------YHQWYSKLKMSKQEI 229 + + + KM+ QE+ Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227 >gi|331085829|ref|ZP_08334912.1| hypothetical protein HMPREF0987_01215 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406752|gb|EGG86257.1| hypothetical protein HMPREF0987_01215 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 699 Score = 35.9 bits (82), Expect = 9.2, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 13/142 (9%) Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI-------KRIYSINNLVNFMKSFVKI 155 M+ I + + + N+ F+ S G+ K+ S K Sbjct: 59 MIMMIFALAVLGCLIFNIYAAGLFFRTKSRETGVFLALGMTKKRLKKELYKELFLSLGKG 118 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215 I+ G ++ + + + + IL F+ + I + T+ +L + Sbjct: 119 IVFGIVLGAA--ASVGIIWVLLHTFLKDILERRMFSAAGLGISLFFAAVTVLILFFMAAR 176 Query: 216 HQWYSKLKMSKQEIKDEIKQSY 237 + + L +I +E K++ Sbjct: 177 YMRRTNLM----DILNEEKKNE 194 >gi|49484371|ref|YP_041595.1| hypothetical protein SAR2235 [Staphylococcus aureus subsp. aureus MRSA252] gi|257426287|ref|ZP_05602702.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428945|ref|ZP_05605339.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431555|ref|ZP_05607928.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257434263|ref|ZP_05610613.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257437176|ref|ZP_05613216.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282904817|ref|ZP_06312691.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus C160] gi|282906493|ref|ZP_06314344.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282911713|ref|ZP_06319512.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914997|ref|ZP_06322777.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M899] gi|282920326|ref|ZP_06328050.1| hypothetical protein SASG_02567 [Staphylococcus aureus subsp. aureus C427] gi|282925537|ref|ZP_06333191.1| hypothetical protein SARG_02371 [Staphylococcus aureus subsp. aureus C101] gi|293509064|ref|ZP_06667851.1| hypothetical protein SCAG_02516 [Staphylococcus aureus subsp. aureus 58-424] gi|293510980|ref|ZP_06669679.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M809] gi|293547582|ref|ZP_06672257.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M1015] gi|295428736|ref|ZP_06821362.1| hypothetical protein SIAG_02686 [Staphylococcus aureus subsp. aureus EMRSA16] gi|49242500|emb|CAG41216.1| putative membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257270992|gb|EEV03165.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274287|gb|EEV05804.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277796|gb|EEV08466.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257280902|gb|EEV11047.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257283569|gb|EEV13696.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282312938|gb|EFB43339.1| hypothetical protein SARG_02371 [Staphylococcus aureus subsp. aureus C101] gi|282316186|gb|EFB46567.1| hypothetical protein SASG_02567 [Staphylococcus aureus subsp. aureus C427] gi|282321200|gb|EFB51531.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M899] gi|282324478|gb|EFB54791.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282330443|gb|EFB59961.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282594850|gb|EFB99827.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus C160] gi|290919702|gb|EFD96775.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M1015] gi|291094768|gb|EFE25040.1| hypothetical protein SCAG_02516 [Staphylococcus aureus subsp. aureus 58-424] gi|291466265|gb|EFF08792.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M809] gi|295127406|gb|EFG57046.1| hypothetical protein SIAG_02686 [Staphylococcus aureus subsp. aureus EMRSA16] gi|312437434|gb|ADQ76505.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus TCH60] gi|315193318|gb|EFU23716.1| hypothetical protein CGSSa00_02376 [Staphylococcus aureus subsp. aureus CGS00] Length = 363 Score = 35.9 bits (82), Expect = 9.2, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 14/211 (6%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +GN S L + +I +L + +Y + S + ++ ++ Q D +H+V Sbjct: 109 AFKKGNYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLV 165 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 + +V+ + + + + + L G K + + Sbjct: 166 GIAITTQSIIIIVVLLIKAIITWLLLIPIF---NFMTSFVESTNDKVKTHLANGFKAMKN 222 Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199 K+F K + ++ + + + IS N S+ + +V +I I Sbjct: 223 GQ------KTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITI 276 Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 +LF+ V+ +G + K++K ++K Sbjct: 277 ILFVVIHAVILMGIVQYYLKRGQKITKDKVK 307 >gi|302380536|ref|ZP_07269001.1| rod shape-determining protein RodA [Finegoldia magna ACS-171-V-Col3] gi|303233817|ref|ZP_07320471.1| rod shape-determining protein RodA [Finegoldia magna BVS033A4] gi|302311479|gb|EFK93495.1| rod shape-determining protein RodA [Finegoldia magna ACS-171-V-Col3] gi|302495251|gb|EFL55003.1| rod shape-determining protein RodA [Finegoldia magna BVS033A4] Length = 367 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 4/193 (2%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+ ++ LI L S + L IS ++ L++ Sbjct: 18 ISVVILVIYGLIVLYSAGSSLSNHYFRKQIIATIIGIIIVLFIISLDNHIIKKLNIPMYI 77 Query: 94 LVIPGLLLFMMFGIGS-YLIQRIPVLNLNHVKP-SFKRVSLREGIKRIY-SINNLVNFMK 150 + L+L + FG+G + + + +P ++ L + I S N +N K Sbjct: 78 ICNVLLVLVLFFGVGDEWGARSWFKFGPINFQPSEIMKIVLIISLANIIESNKNSLNNPK 137 Query: 151 SFVKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 + +KI++ I + + L + + +L+ A + ++ I+L I +L L Sbjct: 138 TLLKILIFAFIPVALILKQPDAGTAMVYTFIIIVMLFTAGIDWKYLISAIILGIVSLPFL 197 Query: 210 DIGWSYHQWYSKL 222 + Q L Sbjct: 198 YLRLDQFQRDRIL 210 >gi|229552874|ref|ZP_04441599.1| membrane protein [Lactobacillus rhamnosus LMS2-1] gi|258540515|ref|YP_003175014.1| membrane protein [Lactobacillus rhamnosus Lc 705] gi|229313743|gb|EEN79716.1| membrane protein [Lactobacillus rhamnosus LMS2-1] gi|257152191|emb|CAR91163.1| Conserved membrane protein [Lactobacillus rhamnosus Lc 705] Length = 276 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 17/193 (8%), Positives = 64/193 (33%), Gaps = 17/193 (8%) Query: 46 YLLFFFSPGIYSVTSDLHVLL-ASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLF 102 + + + V ++ L Q+++ D L L +++ G + Sbjct: 81 WAYALYGALLAGVFEEVGRFLGFKFIQKRIPDKINDPETPFLYGLGHGGLEMILVGSMTV 140 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156 + + + LI + + P+ R ++ +K++ ++ +L+ + + I Sbjct: 141 LSNYLFAMLINSGSIEKVLSQTPASSRSAITAVVKQLTGMSAWTVSLSLLERIMALAVQI 200 Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--------YHAFFTVRKVLIMILLFIATLTV 208 + ++ + + + + H+ + A + +++ + + + Sbjct: 201 ALSVVVWLLIVKRKQWFWLLVPIGLHAFIDFPAALTQVGALSVTVEEFLLVGQSLLIVGL 260 Query: 209 LDIGWSYHQWYSK 221 + W + Sbjct: 261 VYWLWQRTMRNRQ 273 >gi|199598523|ref|ZP_03211940.1| Predicted membrane protein [Lactobacillus rhamnosus HN001] gi|199590565|gb|EDY98654.1| Predicted membrane protein [Lactobacillus rhamnosus HN001] Length = 276 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 64/193 (33%), Gaps = 17/193 (8%) Query: 46 YLLFFFSPGIYSVTSDLHVLL-ASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLF 102 + + + V ++ L Q+++ D L L +++ G + Sbjct: 81 WAYALYGALLAGVFEEVGRFLGFKFIQKRIPDKINDPETPFLYGLGHGGLEMILVGSMTV 140 Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156 + + + LI + + P+ R ++ +K++ ++ +L+ + + I Sbjct: 141 LSNYLFAMLINSGSIEKVLSQTPASSRSAITAVVKQLTGMSAWTVSLSLLERIMALAVQI 200 Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--------YHAFFTVRKVLIMILLFIATLTV 208 + ++ + + + + H+ + A + I++ + + + Sbjct: 201 ALSVVVWLLIVKRKQWFWLLVPIGLHAFIDFPAALAQVGALSLTVEEFILVGQSVLIVGL 260 Query: 209 LDIGWSYHQWYSK 221 + W + Sbjct: 261 VYWLWQRTMRNRQ 273 >gi|169824414|ref|YP_001692025.1| cell division protein RodA-like protein [Finegoldia magna ATCC 29328] gi|167831219|dbj|BAG08135.1| cell division protein RodA homolog [Finegoldia magna ATCC 29328] Length = 367 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 4/193 (2%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S+ ++ LI L S + L IS ++ L++ Sbjct: 18 ISVVILVIYGLIVLYSAGSSLSNHYFRKQIIATIIGIIIVLFIISLDNHIIKKLNIPMYI 77 Query: 94 LVIPGLLLFMMFGIGS-YLIQRIPVLNLNHVKP-SFKRVSLREGIKRIY-SINNLVNFMK 150 + L+L + FG+G + + + +P ++ L + I S N +N K Sbjct: 78 ICNVLLVLVLFFGVGDEWGARSWFKFGPINFQPSEIMKIVLIISLANIIESNKNSLNNPK 137 Query: 151 SFVKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209 + +KI++ I + + L + + +L+ A + ++ I+L I +L L Sbjct: 138 TLLKILIFAFIPVALILKQPDAGTAMVYTFIIIVMLFTAGIDWKYLIGAIILGIVSLPFL 197 Query: 210 DIGWSYHQWYSKL 222 + Q L Sbjct: 198 YLRLDQFQRDRIL 210 >gi|94538366|ref|NP_002411.3| transient receptor potential cation channel subfamily M member 1 [Homo sapiens] gi|182701419|sp|Q7Z4N2|TRPM1_HUMAN RecName: Full=Transient receptor potential cation channel subfamily M member 1; AltName: Full=Long transient receptor potential channel 1; Short=LTrpC1; AltName: Full=Melastatin-1 gi|162319236|gb|AAI56070.1| Transient receptor potential cation channel, subfamily M, member 1 [synthetic construct] Length = 1603 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y+Q E PV++ G Sbjct: 223 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 282 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 283 G-RASDILSFAHKY 295 >gi|54887440|gb|AAH85168.1| Trpm1 protein [Mus musculus] Length = 426 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 136 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 195 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 196 G-RASDILSFAHKY 208 >gi|47214200|emb|CAG00828.1| unnamed protein product [Tetraodon nigroviridis] Length = 2135 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 246 QKSIAR----SRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300 ++ + + RI ++ + +I P L Y+Q PV+V +G A Sbjct: 355 RRQLEKHINLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 414 >gi|307706262|ref|ZP_07643076.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Streptococcus mitis SK321] gi|307618353|gb|EFN97506.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Streptococcus mitis SK321] Length = 524 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 3/207 (1%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 E S +L + + SP I+ S + L + H L + L Sbjct: 128 ELLSVSFVLTLITISSYLLSPSIFLFLSLFASFFLNLVPLILLILYH-KELKSKLKYQRR 186 Query: 93 RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN-LVNFMKS 151 L I L+L + + + V+NL ++ I S+ +V S Sbjct: 187 NLWILALILPLSYFFLYINTRGAGVMNLVWYLEIIGILAFLHLKTIINSLQKKVVELKLS 246 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 ++K ++ + L F + +L ++ + +LD Sbjct: 247 YIKAFSRLFLLIMFLLVGIFIIFHLDLNTSFLVLNIMLLLFGICSEELIRLFRSAEMLDA 306 Query: 212 G-WSYHQWYSKLKMSKQEIKDEIKQSY 237 + + + +M K + +E + Sbjct: 307 RDYVKVLFLKRNRMVKSLLANEDTEQQ 333 >gi|284802794|ref|YP_003414659.1| hypothetical protein LM5578_2551 [Listeria monocytogenes 08-5578] gi|284995936|ref|YP_003417704.1| hypothetical protein LM5923_2501 [Listeria monocytogenes 08-5923] gi|284058356|gb|ADB69297.1| hypothetical protein LM5578_2551 [Listeria monocytogenes 08-5578] gi|284061403|gb|ADB72342.1| hypothetical protein LM5923_2501 [Listeria monocytogenes 08-5923] Length = 650 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 35 SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94 FS + A +LL L ++ R+L + F+L + L Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAVLSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231 Query: 95 VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149 ++ + ++ + ++ + + P +++L I+S+N LV Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285 Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202 IL+GT + L + I+ F + + IL F Sbjct: 286 -----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333 >gi|239931748|ref|ZP_04688701.1| Rieske iron-sulfur protein [Streptomyces ghanaensis ATCC 14672] Length = 339 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%) Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 V + T+S+ + F++ I+Y L + L + + IG Sbjct: 45 VALLFTVSMLATIGFIASFVAIPVDKIVYIFPLGHIGALNLALGVTLGIALFAIGAGAVH 104 Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQ----KSIARSRIRHK 257 W L MS +E+ DE P ++ + + A+ + Sbjct: 105 WARTL-MSDEELTDERHPIEAPPEVRTKVMDDFRQGAKESAIGR 147 >gi|149617148|ref|XP_001519932.1| PREDICTED: similar to transient receptor potential cation channel, subfamily M, member 7, partial [Ornithorhynchus anatinus] Length = 544 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 19/93 (20%) Query: 247 KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305 K+I + RI ++ + +I P L Y+Q PV+V +G A + Sbjct: 267 KTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTG-RAADILA 325 Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338 + KQ +P Sbjct: 326 Y-----------------IHKQTEEGGNLPDGT 341 >gi|148236145|ref|NP_001087254.1| transient receptor potential cation channel subfamily M member 7 [Ovis aries] gi|145202992|gb|ABP35923.1| transient receptor potential cation channel subfamily M member 7 [Ovis aries] Length = 1866 Score = 35.9 bits (82), Expect = 9.4, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K++ + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|315498839|ref|YP_004087643.1| membrane protein insertase, yidc/oxa1 family [Asticcacaulis excentricus CB 48] gi|315416851|gb|ADU13492.1| membrane protein insertase, YidC/Oxa1 family [Asticcacaulis excentricus CB 48] Length = 658 Score = 35.9 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 8/92 (8%) Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIK 230 M F + +L F V + IL + ++ ++ + +K+KM + +++ Sbjct: 359 MFWFFTRPMFFVLDFLFKYVGNFGLAILGLTVLVKLIFFPLAHKSYESMTKMKMLQPQVE 418 Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262 + K+ GNP + + E Sbjct: 419 ELKKKHEGNPQ------QMQIEMMGLYQKEKV 444 >gi|325462308|gb|ADZ14492.1| NADH dehydrogenase subunit 2 [Hoplodactylus sp. Southern Forest] Length = 346 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 26/236 (11%) Query: 24 NEGNAPISR-EASLFSSILACLIYLLFFFSPGIYSVTSDLH--VLLASATQRKLEDISHI 80 G IS+ + +L + + +P + + L LL + + ++ Sbjct: 80 KTGQWDISQLSLPEGTVLLTLALAMKLGLAPLHFWLPETLQGTTLLTATLISTWQKLAPS 139 Query: 81 VFLLTHLSLSASRLVIPGLLLFMMFG--------------IGSYLIQRIPVLNLNHVKPS 126 LL ++ + ++ L + G S + + + P Sbjct: 140 ALLLMTINNLNQQTLMTLGLFSAVLGGWLGLNQTQTRKIMAFSSIAHMGWMFMALSMNPK 199 Query: 127 FKRVSLREGI---KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183 ++L + ++S V K+ + + LT + FT++ P + Sbjct: 200 LALITLITYLILTTAMFSALT-VTSSKTLLDLGTTWPQTPTLLTTSMFTLMSLGGLPPLT 258 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVL-----DIGWSYHQWYSKLKMSKQEIKDEIK 234 + + +++ L I+ L L + + L M + +E K Sbjct: 259 GFMPKWLILNELMTQNLSLISILMALSTLPSLFFYLRMSHMTTLTMPPKTTTNEHK 314 >gi|325568450|ref|ZP_08144817.1| ABC superfamily ATP binding cassette transporter, membrane protein [Enterococcus casseliflavus ATCC 12755] gi|325158219|gb|EGC70372.1| ABC superfamily ATP binding cassette transporter, membrane protein [Enterococcus casseliflavus ATCC 12755] Length = 335 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 7/124 (5%) Query: 90 SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV-SLREGIK---RIYSINNL 145 V+P L+ ++F G ++ PS + S G K R + Sbjct: 47 QLYLFVLPAFLIILIFSYGP---MYGIIIAFKDYMPSLGILGSPWVGFKHFQRFFDSYYF 103 Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205 +K+ + I + ++ L L+ I P + + ++++ Sbjct: 104 WELIKNTLGISIYSLVVGFPLPIILALALNEIKDGPFKKITQTVTYAPNFIAVVVMVGMV 163 Query: 206 LTVL 209 + L Sbjct: 164 IAFL 167 >gi|297479704|ref|XP_002690974.1| PREDICTED: transient receptor potential cation channel, subfamily M, member 7-like [Bos taurus] gi|296483137|gb|DAA25252.1| transient receptor potential cation channel, subfamily M, member 7-like [Bos taurus] Length = 1866 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K++ + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|297589785|ref|ZP_06948425.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MN8] gi|297576913|gb|EFH95627.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MN8] Length = 363 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 14/211 (6%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +GN S L + +I +L + +Y + S + ++ ++ Q D +H+V Sbjct: 109 AFKKGNYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLV 165 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141 + +V+ + + + + + L G K + + Sbjct: 166 GIAITTQSIIIIVVLLIKAIITWLLLIPIF---NFMTSFVESTNDKVKTHLANGFKAMKN 222 Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199 K+F K + ++ + + + IS N S+ + +V +I I Sbjct: 223 GQ------KTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITI 276 Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230 +LF+ V+ +G + K++K ++K Sbjct: 277 ILFVVIHAVILMGIVQYYLKRGQKITKDKVK 307 >gi|329663922|ref|NP_001193095.1| transient receptor potential cation channel subfamily M member 7 [Bos taurus] Length = 1866 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K++ + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|119507922|dbj|BAF42335.1| transient receptor potential cation channel, subfamily M, member 7 [Ovis aries] Length = 1866 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 ++ R+ K++ + RI ++ + +I P L Y+Q PV+V +G Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318 Query: 297 NLIA 300 A Sbjct: 319 GRAA 322 >gi|291280405|ref|YP_003497240.1| hypothetical protein DEFDS_2034 [Deferribacter desulfuricans SSM1] gi|290755107|dbj|BAI81484.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 632 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 77 ISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135 I +++ LLT L + S L VI + + + +I + L +KP+ K ++L Sbjct: 7 IENLLNLLTILMILVSLLSVIKYVSVIFFTLLILTMILFLLNLKYQFLKPNRKILTLLSF 66 Query: 136 IKR--IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193 + I N N + S I+++ + + + Y + + + F + Sbjct: 67 LVSGVIVLKTNSNNLVLSLAHILIIFLCVKLLEYKKYRDYMQILVLSIFLTTASGLFNLS 126 Query: 194 KVLIMILLFIATLT-VLDIGWSYHQWYSKLKMSKQEIKD 231 + ++ +L L I +++ + + ++K EIK+ Sbjct: 127 MIYLVFILLSIVFGYFLAIFATFYDFQESIILNKSEIKE 165 >gi|168262733|ref|ZP_02684706.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348441|gb|EDZ35072.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 475 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%) Query: 40 ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 ++A I + F GIYS + +L Q+ + + S+S Sbjct: 140 VVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRP 199 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 ++ G + ++ + + EG+ R Y +KS Sbjct: 200 GMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQY------EGLKSIF 253 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + L+G ++ L + I+ +S++ I++ + + + D Sbjct: 254 IMPLIGVLVIGVLMSLLGQPVAAIN---NSMMNWLASLQEANPILLGIVVGAMCSFDF 308 >gi|52139056|gb|AAH82560.1| Trpm1 protein [Mus musculus] Length = 443 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 213 G-RASDILSFAHKY 225 >gi|70731490|ref|YP_261231.1| ABC transporter ATP-binding protein [Pseudomonas fluorescens Pf-5] gi|68345789|gb|AAY93395.1| ABC transporter, ATP-binding protein, MsbA family [Pseudomonas fluorescens Pf-5] Length = 572 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 24/200 (12%) Query: 31 SREASLFSSILACLIYL-----LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85 SR+ S+ L L L SV + L VL+ + L D + + Sbjct: 11 SRDPQALSAALGWLYSFVRPHRLAIGGLLGLSVCASLLVLVQPWLTKLLIDDGLLARDFS 70 Query: 86 HLSLSASRLVIPGLLLFMMFGIGSYL---IQRIPVLNL-NHVKPSFKRVSLRE-GIKRIY 140 L L A +++ GLL ++ G+ YL + + L + + +R+S G +RI Sbjct: 71 RLVLIAGLMILAGLLGTLLSGVNRYLHTRLSGRILFALRDDLYRHLQRLSPSFYGQRRIG 130 Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200 + + ++ G + I + + F + + L A + + + Sbjct: 131 DLMSRLD-----------GDVAEI---QRFAVDSLFSAVSSVIGLVVALAMLLTLSWQLS 176 Query: 201 LFIATLTVLDIGWSYHQWYS 220 L L LD+ W Sbjct: 177 LLALVLIPLDVLWLRWMRRK 196 >gi|16766553|ref|NP_462168.1| phosphotransferase system fructose-specific component IIB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161616260|ref|YP_001590225.1| hypothetical protein SPAB_04065 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552096|ref|ZP_02345849.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168463521|ref|ZP_02697438.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197263992|ref|ZP_03164066.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16421813|gb|AAL22127.1| putative phosphotransferase system fructose-specific component IIB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365624|gb|ABX69392.1| hypothetical protein SPAB_04065 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195633302|gb|EDX51716.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242247|gb|EDY24867.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205323242|gb|EDZ11081.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|261248421|emb|CBG26258.1| PTS system fructose-specific EIIbc component [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159805|emb|CBW19324.1| PTS system fructose-specific EIIbc component [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914281|dbj|BAJ38255.1| hypothetical protein STMDT12_C33120 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225941|gb|EFX50995.1| PTS system protein, tagatose-specific IIBC component [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131615|gb|ADX19045.1| putative phosphotransferase system fructose-specific component IIB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 475 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%) Query: 40 ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 ++A I + F GIYS + +L Q+ + + S+S Sbjct: 140 VVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRP 199 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 ++ G + ++ + + EG+ R Y +KS Sbjct: 200 GMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQY------EGLKSIF 253 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + L+G ++ L + I+ +S++ I++ + + + D Sbjct: 254 IMPLIGVLVIGVLMSLLGQPVAAIN---NSMMNWLASLQEANPILLGIVVGAMCSFDF 308 >gi|332798766|ref|YP_004460265.1| Na+/solute symporter [Tepidanaerobacter sp. Re1] gi|332696501|gb|AEE90958.1| Na+/solute symporter [Tepidanaerobacter sp. Re1] Length = 465 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 57/187 (30%), Gaps = 10/187 (5%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A +GN S I L+ ++ FF I L L + + + Sbjct: 250 AAKDGNVAK-----TASIIGGVLLVIISFFPTIIGMGARALSDLDSGGNSFPWVVQNLMN 304 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR--VSLREGIKRI 139 ++ + L+A I ++ S++++ + + ++ +++ I Sbjct: 305 PVIGGIVLAAILSAIMSTADSLLTAATSHIVKDFWIETFQMDEIKDEKKLLNISRNFTFI 364 Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199 I L + + + ++ +I + + I ++ I Sbjct: 365 IGILGL---LIALIMPGIIDALIYSYTMYSAGVFIPVIGGVLWESATREGALASLIIGSI 421 Query: 200 LLFIATL 206 + L Sbjct: 422 VALWGIL 428 >gi|293553837|ref|ZP_06674452.1| pts system fructose-specific eiibbc component [Enterococcus faecium E1039] gi|291602043|gb|EFF32280.1| pts system fructose-specific eiibbc component [Enterococcus faecium E1039] Length = 487 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 60/173 (34%), Gaps = 4/173 (2%) Query: 38 SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96 + ++ + F GIYS D A+A K + + ++ L+ + + Sbjct: 144 FVVAGGVLIAISFAVWGIYSFDPDHAQYNATAAMVKAVGDAAMGMMVPVLAAYIAEGIAK 203 Query: 97 -PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155 PGL++ + GI + + + + + + + I ++ +K+ Sbjct: 204 RPGLVVGFVGGIVAMNGGTGFLGGILAGFLAGYFILFLQKLLTILPKQ--LDGLKAIFLY 261 Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208 ++G + + I+ S L + VL +I+ + + Sbjct: 262 PVIGVAFIGIVMSLLAGPMKAINEGMMSFLAGFEHSNPLVLGVIVGCMCAFDM 314 >gi|223041514|ref|ZP_03611716.1| tRNA-processing ribonuclease BN [Actinobacillus minor 202] gi|223017666|gb|EEF16075.1| tRNA-processing ribonuclease BN [Actinobacillus minor 202] Length = 284 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 18/205 (8%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S++ + S+I ++ L+ I++V L+ L +R + I FLL + L Sbjct: 87 SKQMGIVSTIGLVVVALML-----IHNVDKALNGLWHEPRKRSIF----ISFLLYAVILV 137 Query: 91 ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI---YSINNLVN 147 + LV + + + L + +L ++ L + + + N V Sbjct: 138 LAPLVAGVSIAITSYIMSLSLFNEVATFSLATTLLNYTPFLLIWLLFTLIYKFVPNTTVK 197 Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207 F K L I + + + + + +Y A + +L+ I L + Sbjct: 198 F-KHACAGALFAGIFFTLGKQAF--IWYITTFPSYQAIYGALAVLPIMLLWIHLSWQVVL 254 Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDE 232 + + +L+M KQE KDE Sbjct: 255 LGG---QFAAVLKELEMIKQEKKDE 276 >gi|146181472|ref|XP_001022822.2| ABC transporter family protein [Tetrahymena thermophila] gi|146144171|gb|EAS02577.2| ABC transporter family protein [Tetrahymena thermophila SB210] Length = 1494 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 75/228 (32%), Gaps = 27/228 (11%) Query: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV--L 65 ++K PS K E+ + + S A+ FS++ I+L+FF + S + + Sbjct: 839 EDK--KPSEVKNEEVREQSSIKFSTLATYFSTM--GYIFLMFFLAFNFLMQGSQMLIDFW 894 Query: 66 LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125 L T + ++I + + L+ L + + S+ +L+ + Sbjct: 895 LRDYTNHQSSFFNNINDTFDTFTKAFFFLI---FLNLGITALRSFFYCLCALLSSRRMFL 951 Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYFTMLDFISANPHS 183 + S+ + + N + ++ + S+ Sbjct: 952 KLNK-SILFSKMKFFDTNPVGR---------IISRLADDVDSVDYYLPWQSQTFMEQLAY 1001 Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231 + + + + ++++ + + + + S +EIK Sbjct: 1002 SIGYPVGIIVQFPWIVIIILICFAFIYYV------QRQFRDSNREIKR 1043 >gi|108759425|ref|YP_633155.1| thiol:disulfide interchange protein DsbD [Myxococcus xanthus DK 1622] gi|108463305|gb|ABF88490.1| thiol:disulfide interchange protein DsbD [Myxococcus xanthus DK 1622] Length = 506 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 67/191 (35%), Gaps = 12/191 (6%) Query: 22 ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81 A G A S + + ++LL + S+ + L S+ Q KL + Sbjct: 133 AAKTGQAFGSM-LGHPAVVTGLAVFLLLLAT----SMFGAFELALPSSFQTKLNAVGGAG 187 Query: 82 FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSLREGIKRIY 140 L S S + ++ G+ +++ + + + + + + ++ Sbjct: 188 VAGAFLMGSVSGFLAAPCTGPVLTGLLAFVAKSANTTLGASLLFVYALGIGVPFFLIGVF 247 Query: 141 SIN-----NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195 ++ + ++KS + I+LV + L + + D + + + + Sbjct: 248 TVRLPRGGVWMEWVKSVLGIMLVA-LAFSYLKDAFPWARDVVKGLGLHVGRVPGAVIAAL 306 Query: 196 LIMILLFIATL 206 L+ + + + + Sbjct: 307 LVAVGVALGAV 317 >gi|23098179|ref|NP_691645.1| hypothetical protein OB0724 [Oceanobacillus iheyensis HTE831] gi|22776404|dbj|BAC12680.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 390 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 12/185 (6%) Query: 34 ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 S +IL FF +P L+ A +L + + + + S Sbjct: 91 MSSLHTILIFGAVFYFFAAP-----IGGLNDSFAQRRAGQLGISFGSIRMWGSVGFALSS 145 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 L++ +L G ++ + L + P + + + +N++ +KS Sbjct: 146 LLVGEVLARFGIGYMVWVYLAFGTIALLTLIP----LKDVKADTKPVKLNDISKIIKSKP 201 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 ++ +G I+ I++T M D+ A S L + V ++ A + L W Sbjct: 202 FLLFLGVILFITITHR---MNDYYMALYISELGGSEDLVGLAWFAGVISEAAVFALAAFW 258 Query: 214 SYHQW 218 Sbjct: 259 FRKFH 263 >gi|204928089|ref|ZP_03219289.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322411|gb|EDZ07608.1| pts system fructose-specific eiibc component [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 475 Score = 35.9 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%) Query: 40 ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93 ++A I + F GIYS + +L Q+ + + S+S Sbjct: 140 VVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRP 199 Query: 94 LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153 ++ G + ++ + + EG+ R Y +KS Sbjct: 200 GMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQY------EGLKSIF 253 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + L+G ++ L + I+ +S++ I++ + + + D Sbjct: 254 IMPLIGVLVIGVLMSLLGQPVAAIN---NSMMNWLASLQEANPILLGIVVGAMCSFDF 308 >gi|167564032|ref|ZP_02356948.1| preprotein translocase subunit SecF [Burkholderia oklahomensis EO147] gi|167571178|ref|ZP_02364052.1| preprotein translocase subunit SecF [Burkholderia oklahomensis C6786] Length = 316 Score = 35.9 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +++G +I +S + + I AN H ++ FF + + + A L VL Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200 Query: 212 GWS---------YHQWYSKLKMSKQEI 229 + + + KM+ QE+ Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227 >gi|53720480|ref|YP_109466.1| preprotein translocase subunit SecF [Burkholderia pseudomallei K96243] gi|76811120|ref|YP_334745.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 1710b] gi|126455336|ref|YP_001067602.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 1106a] gi|134280202|ref|ZP_01766913.1| protein-export membrane protein SecF [Burkholderia pseudomallei 305] gi|167721142|ref|ZP_02404378.1| preprotein translocase subunit SecF [Burkholderia pseudomallei DM98] gi|167740114|ref|ZP_02412888.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 14] gi|167817325|ref|ZP_02449005.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 91] gi|167825735|ref|ZP_02457206.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 9] gi|167847220|ref|ZP_02472728.1| preprotein translocase subunit SecF [Burkholderia pseudomallei B7210] gi|167895808|ref|ZP_02483210.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 7894] gi|167904197|ref|ZP_02491402.1| preprotein translocase subunit SecF [Burkholderia pseudomallei NCTC 13177] gi|167912454|ref|ZP_02499545.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 112] gi|167920409|ref|ZP_02507500.1| preprotein translocase subunit SecF [Burkholderia pseudomallei BCC215] gi|217420444|ref|ZP_03451949.1| protein-export membrane protein SecF [Burkholderia pseudomallei 576] gi|226198408|ref|ZP_03793977.1| protein-export membrane protein SecF [Burkholderia pseudomallei Pakistan 9] gi|237813730|ref|YP_002898181.1| protein-export membrane protein SecF [Burkholderia pseudomallei MSHR346] gi|242315899|ref|ZP_04814915.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1106b] gi|254180717|ref|ZP_04887315.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1655] gi|254194969|ref|ZP_04901399.1| protein-export membrane protein SecF [Burkholderia pseudomallei S13] gi|254258479|ref|ZP_04949533.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1710a] gi|52210894|emb|CAH36882.1| putative protein-export membrane protein [Burkholderia pseudomallei K96243] gi|76580573|gb|ABA50048.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1710b] gi|126228978|gb|ABN92518.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1106a] gi|134248209|gb|EBA48292.1| protein-export membrane protein SecF [Burkholderia pseudomallei 305] gi|169651718|gb|EDS84411.1| protein-export membrane protein SecF [Burkholderia pseudomallei S13] gi|184211256|gb|EDU08299.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1655] gi|217395856|gb|EEC35873.1| protein-export membrane protein SecF [Burkholderia pseudomallei 576] gi|225929591|gb|EEH25609.1| protein-export membrane protein SecF [Burkholderia pseudomallei Pakistan 9] gi|237505134|gb|ACQ97452.1| protein-export membrane protein SecF [Burkholderia pseudomallei MSHR346] gi|242139138|gb|EES25540.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1106b] gi|254217168|gb|EET06552.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1710a] Length = 316 Score = 35.9 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +++G +I +S + + I AN H ++ FF + + + A L VL Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200 Query: 212 GWS---------YHQWYSKLKMSKQEI 229 + + + KM+ QE+ Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227 >gi|330508777|ref|YP_004385205.1| F420H2 dehydrogenase subunit M [Methanosaeta concilii GP-6] gi|328929585|gb|AEB69387.1| F420H2 dehydrogenase, subunit M [Methanosaeta concilii GP-6] Length = 500 Score = 35.9 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 62/185 (33%), Gaps = 12/185 (6%) Query: 45 IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL-SLSASRLVIPGLLLFM 103 + FF + S+ L + A +L D S +LT L + + P LL + Sbjct: 157 AAIKFFIYTHVASLV-MLLAIFALYFTYQLPDGSRTFDMLTLLKATQNPEIFPPALLNII 215 Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI----------NNLVNFMKSFV 153 G+ + ++P + P + G + ++ +V + S Sbjct: 216 FAGLLLGFLVKMPAFPFHTWLPDAHVEAPTAGSVVLAALLLKMGGYGLFRIIVPMLPSVD 275 Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213 KI + I L+ Y L + ++ ++ + + + + + L++ + Sbjct: 276 KIFVTIIAIIAVLSIVYGAFLALAQKDIKKLVAYSSVSHMGFVTLGAVALVPLSIQGAMF 335 Query: 214 SYHQW 218 Sbjct: 336 QQFSH 340 >gi|330810396|ref|YP_004354858.1| transporter membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378504|gb|AEA69854.1| Putative transporter, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 433 Score = 35.9 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 11/186 (5%) Query: 31 SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90 S E +S + LL PGI +V S L + + + + + +SL Sbjct: 6 SAEGQAAASTQGRFVRLLKLLGPGIIAVLSWLGAGDLITSSVAGANYGYAMMWVLAVSLL 65 Query: 91 ASRLVIPGLLLFMMF-GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149 L++ + F + G ++Q LN L + Y I + Sbjct: 66 LRYLIVNIIARFQLCNNQGMTILQGYAQLNPFFAWFLLVYALLMGHLMNAYMIKGAGEAL 125 Query: 150 KSFVKI---ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206 +KI +L + +++ + N +S++ + ++ + L +A + Sbjct: 126 AMLLKIDYPMLCSVAVVLAVW-------MLVGRNIYSMIEGVMKGLLAIMTLAFLALAVM 178 Query: 207 TVLDIG 212 + D+ Sbjct: 179 SGPDVA 184 >gi|330815586|ref|YP_004359291.1| Protein export protein SecF [Burkholderia gladioli BSR3] gi|327367979|gb|AEA59335.1| Protein export protein SecF [Burkholderia gladioli BSR3] Length = 316 Score = 35.9 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +++G +I +S + + I AN H ++ FF + + + A L VL Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200 Query: 212 GWS---------YHQWYSKLKMSKQEI 229 + + + KM+ QE+ Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227 >gi|306960158|ref|YP_003875572.1| NADH dehydrogenase subunit 4 [Physemacris variolosa] gi|291463876|gb|ADD97030.1| NADH dehydrogenase subunit 4 [Physemacris variolosa] Length = 440 Score = 35.9 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 3/172 (1%) Query: 40 ILACLIYLLFFFSPGIYSVTSDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98 +L + + F + + DL L + + L HL L + + P Sbjct: 150 LLLVFFKVYYMFGTLYFPLLFDLGSFYFLFYLFIILAFLVKMPMFLVHLWLPKAHVEAPI 209 Query: 99 LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158 ++ G+ L + + + + ++ ++ ++ L Sbjct: 210 SGSMILAGVLLSLGGYGIFRVMKIISFLGLKFNYIWVSISLFG--GVIVSFICLRQVDLK 267 Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210 I S+ + ++ N + L LF ++ + D Sbjct: 268 SLIAYSSVAHMSLVIGGLMTMNWWGCFGSLSLMIGHGLCSSGLFCLSVIIYD 319 >gi|326474240|gb|EGD98249.1| neutral amino acid permease [Trichophyton tonsurans CBS 112818] Length = 513 Score = 35.9 bits (82), Expect = 10.0, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 65/189 (34%), Gaps = 7/189 (3%) Query: 33 EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92 + L+ L L FF+ I + S + + + + D +H + Sbjct: 204 SIPRTFNTLSKLATLSAFFT-FISVLLSMIFAGIEAHPAKYNPDPNHRGPDGKLMGGEPI 262 Query: 93 RLVIPGLLLFMMFGIGSYL-IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151 P + G+ ++L I + + + + ++ K ++++ + Sbjct: 263 VTAFPLPGTTFVAGMSAFLNISYTFIGQITLPSFIAEMRNPKDFSKALWAV-TIAE---- 317 Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211 + +VG I+ + Y T F S + AF + LI + + A+++ I Sbjct: 318 IIVFSIVGAIVYVFTGTQYMTAPAFGSLSNEVYKKVAFSFMVPTLIFLGVLYASVSARFI 377 Query: 212 GWSYHQWYS 220 + + Sbjct: 378 FFRFFDNTR 386 >gi|169881257|ref|NP_001034193.2| transient receptor potential cation channel subfamily M member 1 isoform 2 [Mus musculus] gi|182701420|sp|Q2TV84|TRPM1_MOUSE RecName: Full=Transient receptor potential cation channel subfamily M member 1; AltName: Full=Long transient receptor potential channel 1; Short=LTrpC1; AltName: Full=Melastatin-1 gi|295149302|gb|AAO43093.2| transient receptor potential cation channel subfamily M member 1 long form [Mus musculus] Length = 1622 Score = 35.9 bits (82), Expect = 10.0, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296 +K R+ K I+ +I ++ + +++ P ++ L Y++ + PV+V G Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 328 Query: 297 NLIAKKMRKIAYEH 310 A + A+++ Sbjct: 329 G-RASDILSFAHKY 341 >gi|255930835|ref|XP_002556974.1| Pc12g00720 [Penicillium chrysogenum Wisconsin 54-1255] gi|166989480|sp|A7KAN0|AT222_PENCW RecName: Full=Autophagy-related protein 22-2 gi|129716025|gb|ABO31317.1| Atg22A-2p [Penicillium chrysogenum] gi|211581593|emb|CAP79699.1| Pc12g00720 [Penicillium chrysogenum Wisconsin 54-1255] Length = 607 Score = 35.9 bits (82), Expect = 10.0, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 56/152 (36%), Gaps = 14/152 (9%) Query: 80 IVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVKPSFKRVS-----L 132 ++ L+ L+ +P + ++ GI G++ + +L P VS Sbjct: 295 MLLTLSKTKLAKVSATLPMRFVLLLVGIWWGAFTLVTRNLLKTRP-GPRLDTVSTKGTGR 353 Query: 133 REGIKRI--YSINNLVNFMKSFVKI--ILVGTIITISLTENYFTMLDFISANPHSILYHA 188 R+ ++ +L +K K+ +L+ + L++ T+ + L + Sbjct: 354 WRAWLRLVGFAWKSLWETVKVVSKLREVLIFLVAWFLLSDAMATVSGTAILFARTELKLS 413 Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220 + L+ I ++ +T + +++ Sbjct: 414 TPLIG--LLSITATLSGMTGAFLWPQVSRYFR 443 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.316 0.159 0.465 Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,150,709,574 Number of Sequences: 14124377 Number of extensions: 358670422 Number of successful extensions: 1753358 Number of sequences better than 10.0: 6052 Number of HSP's better than 10.0 without gapping: 4008 Number of HSP's successfully gapped in prelim test: 4143 Number of HSP's that attempted gapping in prelim test: 1742084 Number of HSP's gapped (non-prelim): 9280 length of query: 354 length of database: 4,842,793,630 effective HSP length: 140 effective length of query: 214 effective length of database: 2,865,380,850 effective search space: 613191501900 effective search space used: 613191501900 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 82 (36.0 bits)