BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein
FlhB [Candidatus Liberibacter asiaticus str. psy62]
         (354 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040367|gb|ACT57163.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 354

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS
Sbjct: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL
Sbjct: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN
Sbjct: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP
Sbjct: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA
Sbjct: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI
Sbjct: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354


>gi|315121857|ref|YP_004062346.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495259|gb|ADR51858.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 354

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/352 (74%), Positives = 312/352 (88%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSEND P+NKTE+PSSKKIEDAL++GNAP+SRE  LFSS LACLIYLLFF SPGI+ +T 
Sbjct: 1   MSENDNPENKTESPSSKKIEDALSKGNAPVSREVYLFSSTLACLIYLLFFVSPGIHDLTY 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D  + LAS TQ KL+ +SH+VFLL  L  S S+L+IPGLLLFM+FG+GSYLIQRIP  NL
Sbjct: 61  DFRMFLASVTQWKLDSVSHLVFLLVTLGFSTSKLLIPGLLLFMIFGVGSYLIQRIPSFNL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N+++PS KR+SLREGIKRIYS NNLVNF KS  KI++VGT+I ISL +N+ TML+ I++N
Sbjct: 121 NNIRPSLKRISLREGIKRIYSTNNLVNFTKSSFKIVIVGTLIAISLKDNHLTMLESITSN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  IL+H FFT+RK+LI+ILLFIA LT++DIGW+Y+QWYSKLKMSKQE+KDEIKQSYGNP
Sbjct: 181 PQIILHHIFFTIRKILIIILLFIAILTIIDIGWTYYQWYSKLKMSKQEVKDEIKQSYGNP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+RQKSIARSRIRHKM+EATSRAT++ITNPTHYALALRY+ TEND P+++AKGQNLIA
Sbjct: 241 MIKSRQKSIARSRIRHKMIEATSRATLVITNPTHYALALRYVPTENDVPIMIAKGQNLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+RKIA E NIPIFE+P LARSLF+QVPINS+IPPVFYKA+AQLI+KIY K
Sbjct: 301 SKIRKIASEKNIPIFEDPLLARSLFRQVPINSSIPPVFYKAIAQLIHKIYSK 352


>gi|222147560|ref|YP_002548517.1| flagellar biosynthesis protein FlhB [Agrobacterium vitis S4]
 gi|221734548|gb|ACM35511.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
          Length = 361

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 158/350 (45%), Positives = 239/350 (68%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++++  ++KTE+PS KK+ DA  +GN PISREA LF++ LA  IY +FF   G+ ++  
Sbjct: 1   MADDEDQESKTESPSEKKMRDAAEQGNLPISREAPLFATTLAFYIYFVFFMPQGVSTLYQ 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+    Q  +   + ++ L  HL  S + ++ P LLLFM+FG+     Q +P   L
Sbjct: 61  TLRDLMEKPDQWIIGTGTDVISLFVHLGWSMAAMLGPALLLFMLFGLTQSFAQHLPSFVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P  +R+SL  GI R++S+   V F KS  KII+V  I+ +S+   YF  LD + ++
Sbjct: 121 DRITPKMERLSLIGGIGRMFSVMGFVEFGKSLFKIIVVAIIMFVSMRGQYFGTLDAMLSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       V+++LI++L     LTV+D+GW  + WY KL+M++QE+KDE KQS G+P
Sbjct: 181 PQIIFVKLSDIVQEMLIIVLFATGLLTVMDLGWQRYNWYQKLRMTRQEVKDEHKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQ+S  R + R +MM    RAT+IITNPTH+A+ALRY++TE +AP+++AKGQ+LIA
Sbjct: 241 VVKARQRSAQRDQARRRMMNNVPRATMIITNPTHFAVALRYVRTEMEAPIVLAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA E+NIPIFE+P LARS+F QV ++S IPP+FYKAVA+++ ++Y
Sbjct: 301 LKIREIAEENNIPIFEDPPLARSMFAQVSVDSVIPPIFYKAVAEIVQRLY 350


>gi|222084854|ref|YP_002543383.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
 gi|221722302|gb|ACM25458.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
          Length = 358

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 159/352 (45%), Positives = 238/352 (67%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  D+KTE P+ KK+ D + +GN P SREA++F+S+LA +IY+ FF    +  +  
Sbjct: 1   MADEDK-DSKTEKPTEKKLRDTMEKGNVPHSREATIFASMLATVIYVTFFLPERMGRMGE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q KLE     + L T +      LV+P ++LF +FGIGS + Q +P   L
Sbjct: 60  VLRDLFEKPDQWKLETGPDALSLFTRIGWEVGNLVLPAIVLFFIFGIGSSMFQNLPTPVL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R+S   G  RI+S + LV F KS  KI++V  I+   L   +F  +D ++++
Sbjct: 120 DRIQPKFSRISPVSGWNRIFSTSGLVEFGKSLAKIVVVSIIMFFVLRGQFFHAIDSLASD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       V+++L+++LL  A + + D+ WS H W+ +LKM+KQEIKDE KQS G+P
Sbjct: 180 PQTIFVRLSTIVQRILMIVLLATAVVGIADVLWSRHHWFDQLKMTKQEIKDEFKQSQGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+RQ+S+AR R R +M++   RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 240 IVKSRQRSVARDRARRRMIKQVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA  + IP+FE+P LARS+F QV ++S IP VFYKAVA+LI++IY +
Sbjct: 300 LKIREIAEANGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRIYAQ 351


>gi|241203095|ref|YP_002974191.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856985|gb|ACS54652.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 359

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 152/347 (43%), Positives = 236/347 (68%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 3   DDDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPDSVGRMSETLR 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    ++ L   L  +++ LV P  +LFM+FG+ S + Q +P L L  +
Sbjct: 63  DIFEQPDQWKIETGPDVLALFVRLGWASAALVAPAFILFMVFGVASSVFQNLPTLVLERI 122

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  LV F KS  K+++VG I+   L   YF  +D + ++P +
Sbjct: 123 RPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 182

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 183 ILVRLMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 242

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 243 SRQRSLMRDRARRRMIADVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 302

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y
Sbjct: 303 REIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 349


>gi|15964403|ref|NP_384756.1| flagellar biosynthesis protein FlhB [Sinorhizobium meliloti 1021]
 gi|307311545|ref|ZP_07591186.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C]
 gi|307318900|ref|ZP_07598331.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83]
 gi|17380369|sp|O54243|FLHB_RHIME RecName: Full=Flagellar biosynthetic protein flhB
 gi|15073580|emb|CAC45222.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306895314|gb|EFN26069.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83]
 gi|306899562|gb|EFN30191.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C]
          Length = 360

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 243/350 (69%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D+KTEAPS KKI DA  +GN P SRE + F+S LA  I+++FF S G  ++  
Sbjct: 1   MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +L+  +  V L++H+ L  + LV+P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVFILLILFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G KRIY +  LV F KS  KII+V  ++ + L  +YF  LD + ++
Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       +++++I++L   ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P
Sbjct: 181 PVTIFTTMISDLKQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|15887910|ref|NP_353591.1| flagellar biosynthesis protein FlhB [Agrobacterium tumefaciens str.
           C58]
 gi|2459702|gb|AAB71778.1| FlhB [Agrobacterium tumefaciens]
 gi|15155504|gb|AAK86376.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58]
          Length = 360

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/352 (43%), Positives = 236/352 (67%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   D+KTE P+ KK+ DA  +GN P SRE  +F+S LA   YL+FF   G   +  
Sbjct: 1   MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPEGAGRLGV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q  L      + LL  L  S + L++P +++F++FG+ S  +Q +P   L
Sbjct: 61  TLKDLFGQPEQWNLSTRPDALALLYFLGTSVAYLLMPAMIMFIVFGLASSFLQNLPSPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P + R+S  +G  RIYS    V F KS  KI++V  I+  +L  ++++++D + ++
Sbjct: 121 ERVRPQWSRISPAKGFTRIYSKQGFVEFAKSVFKIMIVSIIMFFALRGDFYSLIDLMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       V+K++++ILL  A L  +D+ W+ H W+S+LKM+K E+K+E KQS G+P
Sbjct: 181 PQVIFVRVVEIVKKMMVVILLSTALLAAVDVLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+RQ+SIAR R R +M+    RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 241 VVKSRQRSIARDRARRRMINNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA E+NIP+FE+P LARS+F QV ++S IPPVFYKAVA+L++++Y +
Sbjct: 301 LKIRQIAEENNIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELVHRVYAR 352


>gi|2916784|emb|CAA11951.1| flhB protein [Sinorhizobium meliloti]
          Length = 360

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 243/350 (69%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D+KTEAPS KKI DA  +GN P SRE + F+S LA  I+++FF S G  ++  
Sbjct: 1   MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +L+  +  V L++H+ L  + LV+P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVSILLILFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G KRIY +  LV F KS  KII+V  ++ + L  +YF  LD + ++
Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       +++++I++L   ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P
Sbjct: 181 PVTIFTTMISDLQQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|150395473|ref|YP_001325940.1| flagellar biosynthesis protein FlhB [Sinorhizobium medicae WSM419]
 gi|150026988|gb|ABR59105.1| flagellar biosynthetic protein FlhB [Sinorhizobium medicae WSM419]
          Length = 360

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/350 (44%), Positives = 245/350 (70%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   D+KTEAPS KKI DA ++GN P SRE + F+S LA  I+++FF + G  +V  
Sbjct: 1   MADDQDKDSKTEAPSEKKISDATDKGNVPFSREVTAFASTLAIYIFVVFFLADGAANVAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +L+  +  V L++H+ L ++ L++P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLDTATDAVALISHVVLKSATLLMPIFILLILFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G KRIY +  LV F KS  K+I+V  ++ + L  +YF  LD + ++
Sbjct: 121 DRIQPKWNRVSPVAGFKRIYGVPGLVEFGKSLFKVIVVSIVVVLVLWNDYFATLDMMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       +++++I++L   ATL ++D+ W+ H WY++LKM+KQE+KDE+KQS G+P
Sbjct: 181 PVMIFTTMTSDLKQIIIVVLFATATLAIVDLFWTRHHWYTELKMTKQEVKDELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSLQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|116250471|ref|YP_766309.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255119|emb|CAK06193.1| putative flagellar biosynthetic protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 365

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 151/347 (43%), Positives = 235/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  +T  L 
Sbjct: 9   DDDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPESVGRMTEMLR 68

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    ++ L   +  +++ LV P  +LFM+FG+ S + Q +P   L  +
Sbjct: 69  DIFEQPDQWKIETGPDVLALFVRIGWASAALVAPAFILFMVFGVASSVFQNLPTPVLERI 128

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  LV F KS  K+++VG I+   L   YF  +D + ++P +
Sbjct: 129 RPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 188

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 189 ILVRMMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 248

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 249 SRQRSLMRDRARRRMIANVDRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 308

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y
Sbjct: 309 REIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 355


>gi|227820846|ref|YP_002824816.1| flagellar biosynthesis protein FlhB [Sinorhizobium fredii NGR234]
 gi|227339845|gb|ACP24063.1| flagellar biosynthetic protein FlhB [Sinorhizobium fredii NGR234]
          Length = 360

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/350 (45%), Positives = 242/350 (69%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++   D+KTEAPS KK+ DA  +GN P SRE + F+S LA  I+++FF S G  S   
Sbjct: 1   MSDDQDKDSKTEAPSEKKLSDAAEKGNVPFSREVTAFASTLAVYIFIVFFLSDGAASTAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +LE  +  V L++H+ L ++ LV+P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLETATDAVGLISHVVLKSAGLVLPVFVLLIIFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P+  RVS   G KRI+ +  LV F KS  KII+V  I+ + L  +YF  LD + ++
Sbjct: 121 DRIMPNMNRVSPIAGFKRIFGVPGLVEFAKSLFKIIVVSIIVVLVLWNDYFATLDLMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       +++++ ++LL  A L ++D+ W+ H WYS+LKM+KQE+K+E+KQS G+P
Sbjct: 181 PVTIFATMISDLKQIVTVVLLATAVLAIVDLFWTRHHWYSELKMTKQEVKEELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT++I NPTHYA+ALRY++ E+DAPV+VA GQ+L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMIASVPRATLVIANPTHYAVALRYVREESDAPVVVAMGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|163758003|ref|ZP_02165091.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43]
 gi|162284292|gb|EDQ34575.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43]
          Length = 363

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 152/353 (43%), Positives = 233/353 (66%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +  D+KTE P+ KK+ DA+++GN P SRE  +F+SIL  L++L+FF        T+
Sbjct: 1   MAEGEDKDSKTEEPTEKKLRDAIDKGNIPFSREVPIFASILGTLLFLVFFLPSAASRFTN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L   +   +LE     V L   L + A  +++P   L M FGI + ++Q +P   L
Sbjct: 61  SLRDLFEQSDDWRLETGGDAVALFQSLFIEAGVVMVPAFALLMGFGIAASVLQNMPSPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P  +R+S+ +G  RIY I  +V F KS  KII V   ++I++ + +F  LDF+  +
Sbjct: 121 DRIQPKLERISIVKGFGRIYGIKGMVEFAKSMFKIIAVSLFVSIAMKDEFFRSLDFMFMD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  ++        KV+ ++L+  A L VLD+ W+ + W++  KMSKQ+IKDE+KQS G+P
Sbjct: 181 PTLVVPDMARIAAKVVAVVLISTALLAVLDVLWTRYSWHNDQKMSKQDIKDELKQSDGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K RQ+S+AR R R +M+    RAT++I NPTH+A+ALRY++ E  APV++AKGQ+LIA
Sbjct: 241 IVKARQRSLARDRARRRMIAEVPRATMVIANPTHFAVALRYVREEGGAPVVIAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  H IP+FE+P LARS+F QV +++ IP VFYKAVA+L+++IY  K
Sbjct: 301 LKIREVAEAHGIPVFEDPPLARSMFAQVSVDNFIPAVFYKAVAELVHRIYTDK 353


>gi|86356301|ref|YP_468193.1| flagellar biosynthesis protein FlhB [Rhizobium etli CFN 42]
 gi|86280403|gb|ABC89466.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
           42]
          Length = 373

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/347 (43%), Positives = 235/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    ++ L   L  + + L+ P  +LFM+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDVLSLFVRLGWAIAALLAPAFILFMVFGIASSVFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  L+ F KS  K+++VG I+   L   YF+ +D + ++P +
Sbjct: 137 RPQASRISPAKGWGRLFSLPGLIEFGKSLFKVVVVGLILFFVLRSEYFSSIDAMFSDPQT 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ EIK+E KQ+ G+P +K
Sbjct: 197 ILVRISTAMRKIVIVVLIATAIVAIADVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363


>gi|327193023|gb|EGE59935.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
           CNPAF512]
          Length = 373

 Score =  325 bits (834), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 149/347 (42%), Positives = 233/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  L+ F KS  K+++VG I+   L   YF  +D + ++P +
Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D  W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363


>gi|209547917|ref|YP_002279834.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533673|gb|ACI53608.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 359

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 149/347 (42%), Positives = 235/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  +   L 
Sbjct: 3   DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGHMAETLR 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    ++ L   L  + + L+ P  +LFM+FGI S + Q +P   L  +
Sbjct: 63  DIFDQPDQWKIETGPDVLSLFVKLGWAIAALLAPAFILFMVFGIASSIFQNLPTPVLERI 122

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G +R++S+  L+ F KS  K+++VG I+   L   YF+ +D + ++P +
Sbjct: 123 RPQASRISPVKGWERLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSDPQT 182

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + ++D+ W+ H W+++LKM++ EIK+E KQ+ G+P +K
Sbjct: 183 ILVRISTAMRKIIIVVLIATAIVAIVDVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVK 242

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 243 GRQRSLMRDRARRRMISNVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 302

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV +++ IP VFYKAVA+LI+++Y
Sbjct: 303 REIAEKNGIPVFEDPPLARSMFAQVSVDTVIPSVFYKAVAELIHRVY 349


>gi|190890352|ref|YP_001976894.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
 gi|190695631|gb|ACE89716.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
          Length = 373

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 149/347 (42%), Positives = 233/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  L+ F KS  K+++VG I+   L   YF  +D + ++P +
Sbjct: 137 RPQASRISPVKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D  W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363


>gi|325291951|ref|YP_004277815.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3]
 gi|325059804|gb|ADY63495.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3]
          Length = 360

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 152/353 (43%), Positives = 233/353 (66%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   D+KTE P+ KK+ DA  +GN P SRE  +F+S LA   YL+FF   G   +  
Sbjct: 1   MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q  L      + LL  L  S + L++P +++F++FG+ S   Q +P   L
Sbjct: 61  TLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P + R+S  +G  RIYS    V F KS  KI++V  I+ +SL  ++++++D + ++
Sbjct: 121 ERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I        +K++++IL   A L  +D+ W+ H W+S+LKM+K E+K+E KQS G+P
Sbjct: 181 PQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQ+S+AR R R +M++   RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 241 VVKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y  K
Sbjct: 301 LKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 353


>gi|45479286|gb|AAS66688.1| FlhB [Agrobacterium sp. H13-3]
          Length = 374

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 151/353 (42%), Positives = 233/353 (66%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           ++++   D+KTE P+ KK+ DA  +GN P SRE  +F+S LA   YL+FF   G   +  
Sbjct: 15  LADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGV 74

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q  L      + LL  L  S + L++P +++F++FG+ S   Q +P   L
Sbjct: 75  TLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVL 134

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P + R+S  +G  RIYS    V F KS  KI++V  I+ +SL  ++++++D + ++
Sbjct: 135 ERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSD 194

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I        +K++++IL   A L  +D+ W+ H W+S+LKM+K E+K+E KQS G+P
Sbjct: 195 PQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 254

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQ+S+AR R R +M++   RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 255 VVKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 314

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y  K
Sbjct: 315 LKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 367


>gi|218663130|ref|ZP_03519060.1| flagellar biosynthesis protein FlhB [Rhizobium etli IE4771]
          Length = 360

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 136/351 (38%), Positives = 215/351 (61%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 3   DDDKDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGRMSETLR 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----VLN 119
            +     Q K+E    ++ L   L  + + L+ P  +L M+FG   + I  +P       
Sbjct: 63  DIFEQPDQWKIETGPDVLALFVRLGWAIAALLAPAFILLMVFG---HRIVDLPEPADACA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            N      +            +     +      K+++VG I+   L   YF  +D + +
Sbjct: 120 GNASDRRLRASRRPRAGHGSSACLASSSSESPLFKVVVVGVILFFVLRSEYFGSIDAMFS 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P +IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+
Sbjct: 180 DPQTILVRMMTAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LI
Sbjct: 240 PFVKGRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 300 ALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 350


>gi|319781693|ref|YP_004141169.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167581|gb|ADV11119.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 360

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 219/353 (62%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    D+KTE  + KKI D + +G  P SRE +LF+S +A L++ +F+    I  +  
Sbjct: 1   MADAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALFASFVAILVFTVFYAKDAIIDLGM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L + L       ++  + ++ L   + L   R V+  ++L  + G+G+ + Q +P    
Sbjct: 61  FLSMFLEKPEAWPMDTETDVIALYKIVLLEVGRAVLSLMVLLTVAGVGASVFQNMPQFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P   R+S+ +G  R++ I   V F+KS  K+     +++ +L+E++  +L  +  N
Sbjct: 121 ERVRPQLSRISIAKGWNRLFGIQGWVEFLKSLGKVGFAIVVLSFTLSEDHRKLLAGMITN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +           +L+ I+  +  +  +DI WS   W   L+MSKQE+KDE KQS G+P
Sbjct: 181 PIAFGLVIRGIAVDILVAIVFVMGLIAAVDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+AR R R +MM A  RAT+II NPTH+++AL+Y++ E+ AP+++AKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPMVLAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNIP+FE+ +LARS++KQV +++ IP  FY+AVA+L+  +Y KK
Sbjct: 301 LKIREIAREHNIPVFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353


>gi|260466631|ref|ZP_05812819.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum
           WSM2075]
 gi|259029637|gb|EEW30925.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum
           WSM2075]
          Length = 360

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 220/353 (62%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    D+KTE  + KKI D + +G  P SRE +L +S +A L++ +F+    I  +  
Sbjct: 1   MSDAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALLASFVAILVFTVFYAKDAIIDLGM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++  + ++ L   + L   R ++  L+L  + GIG+ ++Q +P +  
Sbjct: 61  FLATFLEKPEAWPMDTETDVIALYKLVMLEVGRALVSLLVLLSVAGIGASVLQNMPQIVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R+S+ +G  R++ +   V F+KS  K+     +++ +L+E++  +L  +  N
Sbjct: 121 ERIRPQFSRISIVKGWNRMFGVQGWVEFLKSLGKVGFAIAVLSFTLSEDHRKLLAGMITN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +           +L+ I+  +  +  +DI WS   W   L+MSKQE+KDE KQS G+P
Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+AR R R +MM A  RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNIPIFE+ +LARS++KQV +++ IP  FY+AVA+L+  +Y KK
Sbjct: 301 LKIREIAREHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353


>gi|13472564|ref|NP_104131.1| flagellar biosynthesis protein FlhB [Mesorhizobium loti MAFF303099]
 gi|14023310|dbj|BAB49917.1| flagellar biosynthetic protein; FlhB [Mesorhizobium loti
           MAFF303099]
          Length = 360

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 218/353 (61%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    D+KTE  + KK+ D + +G  P SRE ++ +S +A L++ +F+    + ++  
Sbjct: 1   MSDAADKDSKTEEATEKKVRDTIEQGKLPHSRETAILASFVAILVFTVFYAKDAVINLGM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L + L       +   + ++ L   + L   R V+  L+L  + GIG+ ++Q +P    
Sbjct: 61  FLSMFLEKPEAWPMNTETDVIDLYKIVMLEVGRAVVSLLVLLTVAGIGASVLQNMPQFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S+ +G  R++     V F+KS  K+     ++T +L+E++  +L  +  N
Sbjct: 121 ERIRPQLSRISITKGWNRMFGAQGWVEFLKSLAKVGFAIAVLTFTLSEDHSKLLAGMITN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +           +L+ I+  +  +  +DI WS   W   L+M+KQE+KDE KQS G+P
Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMTKQEVKDEFKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+AR R R +MM A  RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNIPIFE+ +LARS++KQV +++ IP  FY+AVA+L+  +Y KK
Sbjct: 301 LKIREIAKEHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353


>gi|217976220|ref|YP_002360367.1| flagellar biosynthesis protein FlhB [Methylocella silvestris BL2]
 gi|217501596|gb|ACK49005.1| type III secretion exporter [Methylocella silvestris BL2]
          Length = 359

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 217/349 (62%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +++ +++TE  + KKI D L  GNAP SREA+LF+S+ A LI   FF    I S+T  LH
Sbjct: 3   DESTESRTEEATEKKIGDELERGNAPFSREAALFASVSAMLIIGAFFAQQCIASMTLLLH 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            LL  A   +L + +  V L+  +S    +++I   ++F   G+ +  +Q  P L ++ +
Sbjct: 63  HLLDDAGGVRLRNGNDAVALMKLVSWDVFKVLIAPFVVFAAGGVLASALQNAPRLVVDRI 122

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P+FKR+SL EG +R++       F KS VK+  +  I+   L      +++ ++  P +
Sbjct: 123 LPNFKRISLTEGWQRLHGARGYAEFSKSVVKLASISVIVLAVLQSQQNKLVNAVALEPEA 182

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +         K++ ++ +  A L  +D+ WS   W   ++MS+QEIKDE+KQS G+P+ K
Sbjct: 183 LPELILSVAMKLMSVVCIVTAALLAIDLVWSRFHWRRDMRMSRQEIKDEMKQSDGDPVRK 242

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +S+A+ R+R  M+ A  +AT++I NPTHYA+ALRY++ E  AP++++KGQ+LIA K+
Sbjct: 243 ARLRSLAQDRVRKNMIAAVPKATLVIANPTHYAIALRYVKEEGGAPMVISKGQDLIALKI 302

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           R++A  H+IPI E+  LARS++  V ++  IPP FYKAVA+LI+ +Y K
Sbjct: 303 RELAERHSIPIIEDKLLARSMYDSVEVDHPIPPQFYKAVAELIHYLYSK 351


>gi|115523175|ref|YP_780086.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisA53]
 gi|115517122|gb|ABJ05106.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisA53]
          Length = 358

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 218/351 (62%), Gaps = 2/351 (0%)

Query: 4   NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           +DAP+  +KTE P+ KK+ D++ +G  P+SRE ++FSS++A L+ L F     + ++T  
Sbjct: 2   SDAPEKESKTEEPTEKKVRDSVEKGQIPVSREVAIFSSMIALLLILSFLTGDKLTALTKA 61

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L  L+   +  +++  +  + L+T + +S++R V+P +++  + G+ S  +Q +P +  +
Sbjct: 62  LAGLIDDPSGVRIKTGADAIELITAIGVSSARFVLPIVVVLSLAGLASSFLQNVPRIVAD 121

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P   R+S+ +G +RI+     V F KS  K I +  ++ I L       ++ +  +P
Sbjct: 122 RIEPKLSRISIAKGWERIFGAQGRVEFAKSVFKFIAISIVVAIVLKAEEAATVNALFGDP 181

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            ++      T  +++  I +    L  LD+ W+   W   L+M+KQE+KDE KQ+ G+PI
Sbjct: 182 TAVPELVLTTAMQLVSAISIATIVLVALDLVWARFHWRQDLRMTKQELKDEFKQAEGDPI 241

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K+R +SIAR R R+ M+ A  RAT++I NPTHYA+AL+Y   E+ AP ++AKGQ+LIA 
Sbjct: 242 VKSRMRSIARDRARNAMLAAVPRATLVIANPTHYAIALKYQHGEDPAPTVLAKGQDLIAL 301

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           K+R+IA ++N+P+ E+  LAR+++    I+  IP  F++ VA++IY ++ +
Sbjct: 302 KIREIAEQNNVPVVEDRMLARAMYDAAQIDRVIPAEFFRPVAEIIYFLHSR 352


>gi|110632668|ref|YP_672876.1| flagellar biosynthesis protein FlhB [Mesorhizobium sp. BNC1]
 gi|110283652|gb|ABG61711.1| flagellar biosynthetic protein FlhB [Chelativorans sp. BNC1]
          Length = 363

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 135/350 (38%), Positives = 217/350 (62%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE  + KKI D + +G  P SREA + +S LA L++++FF       +  
Sbjct: 1   MAEGADKESKTEEATEKKIRDTVEKGQLPFSREAPVLASFLAILVFVVFFAEDRAVQLAG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L + +  A    L+  +  + +   + L   ++V   +LL +  G+ + ++Q  P   L
Sbjct: 61  FLAIFIERADGWSLKTQTDAIAIYRIVFLQIGKVVGIVMLLLVAAGVSASILQNTPRFVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   RVSL +G  R++    LV F KS  K+++VG ++  +L      +L  +  +
Sbjct: 121 ERIQPKLSRVSLAKGWSRLFGTRGLVEFAKSVGKMLVVGALVAFTLRHADTRLLSGMVTH 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +        V  +LI I LF+  + V D+ WS   W   L+MS+QE+KDE KQ+ G+P
Sbjct: 181 PVAFTVTIRDLVINILIAIALFMTLVAVADLVWSRFSWRQDLRMSRQEVKDEQKQTDGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ R +S+AR R R +MM A  +AT++I NPTHYA+ALRY + ++ APV+VAKGQ+L+A
Sbjct: 241 LMRARLRSVARDRARRRMMSAIPQATLVIANPTHYAIALRYQRDKDAAPVVVAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R++A EHNIP+FEEP+LARS++KQV ++S IPP FYKAVA+L+ ++Y
Sbjct: 301 LRIRELAREHNIPVFEEPALARSMYKQVSVDSLIPPQFYKAVAELVRRVY 350


>gi|254505032|ref|ZP_05117183.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
 gi|222441103|gb|EEE47782.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
          Length = 358

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/357 (37%), Positives = 211/357 (59%), Gaps = 8/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    D+KTE P+ KKI+DA+ +GN P+S+EA + + ++  L+   F  + G+  + S
Sbjct: 1   MSEEADKDSKTEEPTEKKIQDAIEKGNTPVSKEAPVLAMLIGALLIGGFAITSGVRQLVS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+  LL  +    L + +  + L   LS+     + P + +  + G+ S  +Q  P +  
Sbjct: 61  DMAHLLDVSGGLDLGNSADALMLSHSLSIKVGLFLAPIIAILSVSGLASAFLQNKPSIVP 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI--- 177
           N +KP   ++SL++G  RI+     V F+K+  K   V  I+      +   +++ +   
Sbjct: 121 NRIKPELSKLSLKKGWSRIFGAQGFVEFLKAVFKFSTVSAIVYAQFRAHESDLINAMFTD 180

Query: 178 -SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            SA P  IL  +   +  V I+ +L    L  +DI WS   W   L+M+KQE+KDE KQ 
Sbjct: 181 PSALPEMILQISLRLISGVCIVTIL----LVTVDILWSRSHWRKNLRMTKQEVKDEHKQM 236

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+PI+K RQ+S+AR R R++MM A  +AT+++ NPTH+A+ALRY   +N APV+VAKGQ
Sbjct: 237 EGDPIVKARQRSLARDRARNRMMSAVPQATLVVANPTHFAVALRYDGEKNPAPVVVAKGQ 296

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +LIA K+R+IA  ++IP+ E+  LARSL+    +   IPP FY+AVA++I  +Y +K
Sbjct: 297 DLIALKIREIAETNDIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICFVYSRK 353


>gi|90422606|ref|YP_530976.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisB18]
 gi|90104620|gb|ABD86657.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisB18]
          Length = 358

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 215/353 (60%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    ++KTE P+ KKI D++ +G  P+SREAS+FSS++A L+ L F     + ++T+
Sbjct: 1   MSEGPDKESKTEEPTEKKIRDSVEKGKIPVSREASIFSSMIALLLILSFLAVDNVRNLTA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  ++   +  ++   +     L  +  SA+ LV+P +++  + G+ + ++Q +P++  
Sbjct: 61  TLARMIDDPSGIRIRTAADATEFLVAVGASAAGLVLPIVIVLAVAGVLASVLQNVPLIVF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+S+ +G  RI+     V F KS  K I +  ++TI L     T ++ + ++
Sbjct: 121 ERIAPDASRISIAKGWGRIFGGQGRVEFAKSVFKFIAISLVVTIVLRAEEATAVNALFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++         +++  I +    L  LD+ W+   W   L+M+KQE+KDE +Q+ G+P
Sbjct: 181 PTAVPELILAAAMRLVSAISIATIVLVALDLLWARFHWRRDLRMTKQELKDEFRQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +SIAR R R +M+ A  RAT++I NPTHYA+AL+Y   E+ AP ++AKGQ+LIA
Sbjct: 241 IVKSRLRSIARDRARKRMLAAVPRATLVIANPTHYAIALKYQHGEDAAPTVLAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  +N+P+ E+  LARS++    I+  IP  F++ VA++IY ++ ++
Sbjct: 301 LKIREIAERNNVPVVEDRMLARSMYDAAEIDRVIPAEFFRPVAEIIYFLHSRR 353


>gi|118589950|ref|ZP_01547354.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
 gi|118437447|gb|EAV44084.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
          Length = 357

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 142/358 (39%), Positives = 210/358 (58%), Gaps = 11/358 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D  D+KTE P+ KKI DA+ +GN P+SREA + ++ +A L+   F  +     +  
Sbjct: 1   MSEEDK-DSKTEEPTEKKISDAIEKGNTPVSREAPVLATFIATLLIGSFVITSASRQLIQ 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  LL  +    L + S    LLTH +S+     + P + L    G+ S  +Q  P + 
Sbjct: 60  MLTHLLDLSGGVDLGN-SADALLLTHAVSIEVLVFLAPIVALLAASGLASAFLQNTPSIV 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-- 177
            + +KP   ++SL +G  RI+    LV F+K+  K   V  I+      N   +++ +  
Sbjct: 119 FHRIKPDASKLSLAKGWSRIFGAQGLVEFLKAVFKFSTVSAIVYGQFRANEAELINAMFT 178

Query: 178 --SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             SA P +IL  +   +  V I+ +L    L  +DI WS   W   L+MSKQEIKDE KQ
Sbjct: 179 DPSALPEAILQISMKLIAGVCIVTIL----LVTVDILWSRSHWRKNLRMSKQEIKDEHKQ 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+PI+K RQ+S+AR R R++MM A  +AT+I+ NPTH+A+ALRY   +N APV+VAKG
Sbjct: 235 MEGDPIVKARQRSLARDRARNRMMSAVPQATLIVANPTHFAVALRYDGDQNPAPVVVAKG 294

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           Q+LIA K+R+IA  +NIP+ E+  LARSL+    +   IPP FY+AVA++I  +Y ++
Sbjct: 295 QDLIALKIREIAEANNIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICYVYSRQ 352


>gi|90418395|ref|ZP_01226307.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338067|gb|EAS51718.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 362

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/352 (35%), Positives = 207/352 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+++   +KTE P+ KKI DA+ +GN P+SREA + +S+LA + ++      G+  +  
Sbjct: 1   MSDSEDKSSKTEFPTEKKISDAVEKGNLPVSREAPILASLLAIMAFIALQAREGVQRLLL 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  Q  L+  +  + +L  L+  A   ++P   LF+  G+ S ++Q  P +N+
Sbjct: 61  SLQTTFENPLQWDLDTSADALHVLHMLAREAVWFILPAAGLFVAGGVISSVLQNPPQINI 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P +  VS   G  RI+ +  L  F K+  K I +G ++++ L  ++ TM+  + A+
Sbjct: 121 ERIRPKWSNVSPASGFTRIFGLRGLTEFGKAVFKFITIGVVVSMLLVSSFPTMMQAMFAD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         K+L  I +    L   D+  +   W   L MSKQEIKDE KQ+ G+P
Sbjct: 181 PVLVPELILQMAMKLLSGISIATIVLVAADLAMTRFHWRRDLMMSKQEIKDENKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK RQ+ I R R+R +MM     AT++I NPTHYA+ALRY + E  AP++VAKG +L+A
Sbjct: 241 QIKARQRQIGRDRVRRRMMADVPLATLVIANPTHYAIALRYNREEGGAPMVVAKGADLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA  +++P+ E+  LARS++  V I+  IPP F+KA+A++IY ++ +
Sbjct: 301 LKIREIAEANDVPVIEDKLLARSMYDHVEIDQMIPPKFFKAIAEIIYFLHSR 352


>gi|306846305|ref|ZP_07478866.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1]
 gi|306273300|gb|EFM55169.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1]
          Length = 356

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 208/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPIFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRKNVVRLLVANVLTIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R RH+M+ A   AT+I+ NPTH+++ALRY   E+ APV++AKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARHRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVIAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAVSHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|256158147|ref|ZP_05456063.1| flagellar biosynthesis protein FlhB [Brucella ceti M490/95/1]
 gi|256252902|ref|ZP_05458438.1| flagellar biosynthesis protein FlhB [Brucella ceti B1/94]
 gi|261219990|ref|ZP_05934271.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94]
 gi|265996665|ref|ZP_06109222.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1]
 gi|260918574|gb|EEX85227.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94]
 gi|262550962|gb|EEZ07123.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1]
          Length = 356

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   EN APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNENAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|254695264|ref|ZP_05157092.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215629|ref|ZP_05929910.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917236|gb|EEX84097.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str.
           Tulya]
          Length = 356

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 208/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+  +    L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRSEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|254711986|ref|ZP_05173797.1| flagellar biosynthesis protein FlhB [Brucella ceti M644/93/1]
 gi|254715056|ref|ZP_05176867.1| flagellar biosynthesis protein FlhB [Brucella ceti M13/05/1]
 gi|261216763|ref|ZP_05931044.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1]
 gi|261319630|ref|ZP_05958827.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1]
 gi|260921852|gb|EEX88420.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1]
 gi|261292320|gb|EEX95816.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1]
          Length = 356

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVGFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|17989459|ref|NP_542092.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str.
           16M]
 gi|148558113|ref|YP_001257188.1| flagellar biosynthesis protein FlhB [Brucella ovis ATCC 25840]
 gi|163844317|ref|YP_001621972.1| flagellar biosynthesis protein FlhB [Brucella suis ATCC 23445]
 gi|225628598|ref|ZP_03786632.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo]
 gi|225685983|ref|YP_002733955.1| flagellar biosynthesis protein FlhB [Brucella melitensis ATCC
           23457]
 gi|254699432|ref|ZP_05161260.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 5 str. 513]
 gi|254706322|ref|ZP_05168150.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis
           M163/99/10]
 gi|254711387|ref|ZP_05173198.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis B2/94]
 gi|256014911|ref|YP_003104920.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|256029983|ref|ZP_05443597.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis
           M292/94/1]
 gi|256043043|ref|ZP_05445988.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256059636|ref|ZP_05449833.1| flagellar biosynthesis protein FlhB [Brucella neotomae 5K33]
 gi|256111971|ref|ZP_05452922.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 3 str.
           Ether]
 gi|256262893|ref|ZP_05465425.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9]
 gi|260564276|ref|ZP_05834761.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M]
 gi|261313768|ref|ZP_05952965.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M163/99/10]
 gi|261318993|ref|ZP_05958190.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94]
 gi|261323606|ref|ZP_05962803.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33]
 gi|261749883|ref|ZP_05993592.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513]
 gi|265987004|ref|ZP_06099561.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M292/94/1]
 gi|265989482|ref|ZP_06102039.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993419|ref|ZP_06105976.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str.
           Ether]
 gi|17985338|gb|AAL54356.1| flagellar biosynthetic protein flhb [Brucella melitensis bv. 1 str.
           16M]
 gi|148369398|gb|ABQ62270.1| flagellar biosynthetic protein FlhB [Brucella ovis ATCC 25840]
 gi|163675040|gb|ABY39150.1| flagellar biosynthetic protein FlhB [Brucella suis ATCC 23445]
 gi|225616444|gb|EEH13492.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo]
 gi|225642088|gb|ACO02001.1| flagellar biosynthetic protein FlhB [Brucella melitensis ATCC
           23457]
 gi|255997571|gb|ACU49258.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|260151919|gb|EEW87012.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M]
 gi|261298216|gb|EEY01713.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94]
 gi|261299586|gb|EEY03083.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33]
 gi|261302794|gb|EEY06291.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M163/99/10]
 gi|261739636|gb|EEY27562.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513]
 gi|262764289|gb|EEZ10321.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000151|gb|EEZ12841.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092730|gb|EEZ16939.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9]
 gi|264659201|gb|EEZ29462.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M292/94/1]
 gi|326410307|gb|ADZ67371.1| flagellar biosynthesis protein FlhB [Brucella melitensis M28]
 gi|326553600|gb|ADZ88239.1| flagellar biosynthesis protein FlhB [Brucella melitensis M5-90]
          Length = 356

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|256256624|ref|ZP_05462160.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 9 str.
           C68]
 gi|260882866|ref|ZP_05894480.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str.
           C68]
 gi|297249980|ref|ZP_06933681.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str.
           B3196]
 gi|260872394|gb|EEX79463.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str.
           C68]
 gi|297173849|gb|EFH33213.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str.
           B3196]
          Length = 356

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|294853145|ref|ZP_06793817.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026]
 gi|294818800|gb|EFG35800.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026]
          Length = 356

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIADFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|114706765|ref|ZP_01439665.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506]
 gi|114537713|gb|EAU40837.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506]
          Length = 362

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 203/353 (57%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    KTE P+ KKI D + +GN P SREA + +S LA  +++        Y + +
Sbjct: 1   MAESEDRSQKTEQPTEKKIRDTIEKGNLPNSREAPVLASFLAISLFIALQARESGYRLLT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  Q +LE     + +L+ LS  A+  ++P  +   + GI + ++Q  P +N 
Sbjct: 61  TLQTTFDNPLQWELETSRDALHVLSVLSTEAAIFLVPVAIFLCIGGILASVLQNPPQVNF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP    +S   G+KRI+    L  F K+  K +++G ++   +  N  TM+  + A+
Sbjct: 121 ERIKPKASNISPASGLKRIFGPRGLTEFAKAVFKFLMIGVVVGTLIVSNLGTMIQTMLAD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         K+L  + +    L   DI  +   W   + MSKQEIKDE KQ+ G+P
Sbjct: 181 PVQVPELVLDLAMKLLSGVSIATIVLVAADIAMTRIHWRRDIMMSKQEIKDEHKQTDGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQK IAR R R +M+ A   AT++I NPTHYA+ALRY + E  AP++VAKG +L+A
Sbjct: 241 MVKQRQKQIARERSRKRMIAAVPNATLVIANPTHYAIALRYKREEGGAPMVVAKGTDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A E  IP+ E+  LARS++  V I+  IPP F+KAVA++IY ++ ++
Sbjct: 301 LKIREVAEEKEIPVIEDKLLARSMYDHVHIDQMIPPEFFKAVAEIIYYLHTRE 353


>gi|23499885|ref|NP_699325.1| flagellar biosynthesis protein FlhB [Brucella suis 1330]
 gi|161620208|ref|YP_001594094.1| flagellar biosynthesis protein FlhB [Brucella canis ATCC 23365]
 gi|254702550|ref|ZP_05164378.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 3 str. 686]
 gi|260568543|ref|ZP_05839012.1| type III secretion exporter [Brucella suis bv. 4 str. 40]
 gi|261753127|ref|ZP_05996836.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686]
 gi|23463460|gb|AAN33330.1| flagellar biosynthetic protein FlhB [Brucella suis 1330]
 gi|161337019|gb|ABX63323.1| flagellar biosynthetic protein FlhB [Brucella canis ATCC 23365]
 gi|260155208|gb|EEW90289.1| type III secretion exporter [Brucella suis bv. 4 str. 40]
 gi|261742880|gb|EEY30806.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686]
          Length = 356

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDHMIAPEFYKAVAELIRIINTRR 353


>gi|296447442|ref|ZP_06889367.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium
           OB3b]
 gi|296255062|gb|EFH02164.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium
           OB3b]
          Length = 358

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 210/353 (59%), Gaps = 12/353 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57
           MSE++  D++TE  S KKI DAL +G  P++R+   A LF   L C+ +++    P    
Sbjct: 1   MSESEDDDSRTEEASEKKILDALEQGKTPVARDVAVAVLFLGFLLCVSFVIETVGP---R 57

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +   + ++L++  Q  L + +        ++    R + P L +FM+ G+ S  +Q  P 
Sbjct: 58  LALSMELMLSNVGQFSLANGADAFMQSRAVAEEIGRFLAPMLSIFMITGLLSAAMQGAPR 117

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L    ++P   R+S ++G+KRI+ +  +V  +KS  KI ++G  +  SLT +   ++D +
Sbjct: 118 LVFKRIEPDLSRISPQQGLKRIFGVTGVVELVKSIAKIAVIGGAVVFSLTVDRDLIIDAM 177

Query: 178 SANPH---SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              P    S+L      +  V+ + ++ IA   + D+ WS  +W   ++MS+QE+K+E K
Sbjct: 178 RMEPAHLPSLLLKLIIRLTSVVCIPVVLIA---LADLAWSKFKWRRDMRMSRQEMKEEHK 234

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           QS G+P++K R +S+A  R R +MM    +AT++I NPTHYA+ALRY++TE  AP +VAK
Sbjct: 235 QSEGDPLVKARMRSLALERSRKRMMAQVPQATMVIANPTHYAIALRYVRTEGGAPTVVAK 294

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           G++L+A K+R+IA  H +P+ E P LAR+++  V ++  IP  FY+ VA+LI+
Sbjct: 295 GKDLVALKIREIAEAHGVPVLERPELARAMYNHVEVDQMIPSEFYRPVAELIH 347


>gi|182679720|ref|YP_001833866.1| flagellar biosynthesis protein FlhB [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635603|gb|ACB96377.1| flagellar biosynthetic protein FlhB [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 360

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/353 (37%), Positives = 210/353 (59%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D++TE P++KK++DA+ +GN PISRE  +F+S+L+ LI   F     +  + +
Sbjct: 1   MAEKPDQDSQTEEPTAKKMDDAIEQGNLPISREMIIFASMLSLLIVNAFILRNSLADIVT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +  ++ Q  L +    V L   +       ++P +L FM+ GI + + Q    L L
Sbjct: 61  LLKYVFNNSDQIPLRNQLDAVNLFQLILTETGPRLVPIILPFMIAGIAANIGQSKLRLIL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F  +SL  G K+++   NL  F+K+ +K+  V  ++ + L  N   +++ +  +
Sbjct: 121 ERIQPDFGHLSLISGWKKLFGQKNLAEFLKNVIKLSAVALLLFMVLKGNQDKLINAMFLD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I         ++L +I +    L   D+ W  +QW   L+MSKQEIKDE+KQ  G+P
Sbjct: 181 PSAIPELILSLSMRLLSVICIVTIVLATADLLWVKNQWRRDLRMSKQEIKDELKQMEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +S+A  RIR  M+    +AT++I NPTH+A+ALRY++ E   PV+VAKG +LIA
Sbjct: 241 LIKARLRSVALDRIRKSMIADVPKATVVIANPTHFAVALRYVREEGGTPVVVAKGTDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  HNIPI E+  LARSL   V +N AIP  FY+A+A++I+ +  KK
Sbjct: 301 LKIREIAEAHNIPIVEDRPLARSLHASVEVNQAIPAEFYRAIAEIIHYLNTKK 353


>gi|170741402|ref|YP_001770057.1| flagellar biosynthesis protein FlhB [Methylobacterium sp. 4-46]
 gi|168195676|gb|ACA17623.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
          Length = 354

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 212/356 (59%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    ++KTE+P+ +++ +A+ +G+ P+SREAS+ +S++  LI L  F      ++  
Sbjct: 1   MADETDQESKTESPTERRVREAIEKGDVPVSREASVLASVIGLLIALTLFVRGQAATLAR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +   L+       LE+      LL  ++++A R ++P L +  + G+ + ++Q +P    
Sbjct: 61  EFVPLIDQPRGFTLENARDATLLLQSVAIAAGRFLLPVLAILAVCGLAASMLQNLPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G  RI+  +  V F+KS  K + +  +  + L      +L+ ++ +
Sbjct: 121 DRIQPKWSRVSPASGWSRIFGRSGQVEFLKSLFKFLTITVVSLLLLRSERHKVLNAMTVD 180

Query: 181 PHS----ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           P      IL  A   V  V I  ++ +A     D+ W+  +W   L+MS+QE KDE KQ 
Sbjct: 181 PSQVPELILSMAIRLVSAVSIATIVLVAA----DLIWARLRWQRSLRMSRQETKDEHKQI 236

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P++K R +S+A+ R R +M+ A  RAT++I NPTH+A+ALRY + EN AP++VAKGQ
Sbjct: 237 EGDPLVKARLRSLAQDRTRKRMLAAVPRATVVIANPTHFAVALRYERDENPAPLVVAKGQ 296

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +LIA K+R+IA  + IP+ E+  LARSL+  V ++  IP  FY+AVAQ+++ ++ +
Sbjct: 297 DLIALKIREIAEANGIPVIEDKPLARSLYDSVQVDQLIPAEFYRAVAQILFYVFAR 352


>gi|62317075|ref|YP_222928.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 1 str.
           9-941]
 gi|83269068|ref|YP_418359.1| flagellar biosynthesis protein FlhB [Brucella melitensis biovar
           Abortus 2308]
 gi|189022341|ref|YP_001932082.1| flagellar biosynthesis protein FlhB [Brucella abortus S19]
 gi|237816636|ref|ZP_04595628.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A]
 gi|254698362|ref|ZP_05160190.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731807|ref|ZP_05190385.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 4 str.
           292]
 gi|260544314|ref|ZP_05820135.1| type III secretion exporter [Brucella abortus NCTC 8038]
 gi|260759573|ref|ZP_05871921.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str.
           292]
 gi|260762817|ref|ZP_05875149.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62197268|gb|AAX75567.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 1 str.
           9-941]
 gi|82939342|emb|CAJ12286.1| Type III secretion exporter:Flagellar biosynthetic protein FlhB
           [Brucella melitensis biovar Abortus 2308]
 gi|189020915|gb|ACD73636.1| Type III secretion exporter [Brucella abortus S19]
 gi|237787449|gb|EEP61665.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A]
 gi|260097585|gb|EEW81459.1| type III secretion exporter [Brucella abortus NCTC 8038]
 gi|260669891|gb|EEX56831.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str.
           292]
 gi|260673238|gb|EEX60059.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 356

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 206/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DA ++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDAQDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|170748134|ref|YP_001754394.1| flagellar biosynthesis protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654656|gb|ACB23711.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 353

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 214/355 (60%), Gaps = 6/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   ++KTEA S KKI DA+ EGN P SREA +F+SIL  LI+L+F           
Sbjct: 1   MSEDR--ESKTEAASEKKISDAIAEGNTPFSREAPVFASILGLLIFLVFVARDQGLPFVQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L ++L       +E     + L+  L+L   R ++P L++ +  GI + + Q  P + +
Sbjct: 59  RLALILEQPRNFSVETRHDAMRLVHALALEMGRFLLPVLIILLAAGITASIFQNAPRVVI 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + R+S   G  R++S+   + F KS  K   +G +  + L  +   +++ +  +
Sbjct: 119 DRIQPKWSRISPVTGWNRLFSLQGFIEFGKSLFKFFAIGGMSYMVLHADRHEIVNVMFVD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           P  +    F     V ++  + +AT+ ++  D+ W+  +W   L+MS+QE+KDE KQ  G
Sbjct: 179 PVGL--PEFLLTLSVRLVSAVSVATIALVAGDLVWTRLRWQRDLRMSRQEVKDEFKQLEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K + +S+A+ R+R +MM A  RAT+I+ NPTHYA+ALRY Q+ENDAP+++AKG +L
Sbjct: 237 DPLVKAKMRSLAQDRLRKQMMAAVPRATMILANPTHYAIALRYDQSENDAPMVLAKGADL 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA ++R++A +H I +  + +L R+++  V IN AIP  FY+AVA L+  +  +K
Sbjct: 297 IALRIRELAEKHRIEVVVDKALTRAMYDHVEINQAIPAEFYRAVANLLVYVMTRK 351


>gi|254559224|ref|YP_003066319.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
 gi|254266502|emb|CAX22266.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
          Length = 353

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  ++KTEA + +++ DA+ +G+ P SREA +F+S L  LI L  F       +  D  
Sbjct: 3   DDDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAGDFA 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L+ +
Sbjct: 63  PLLDDPRGFSLESSGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVLDRI 122

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL----TENYFTMLDFISA 179
            P + RVS   G  RI+  +  V F+KS VK + V  +  + L    T     M    S 
Sbjct: 123 TPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVDPSQ 182

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  IL  A   V  V I  ++ +A     D+ W+  +W   L+MS Q+IKDE KQ+ G+
Sbjct: 183 LPELILTVAIRLVSAVAIATIVIVAG----DLVWARLRWQRSLRMSHQDIKDEHKQTEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+LI
Sbjct: 239 PSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLI 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++ +
Sbjct: 299 ALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 351


>gi|218528682|ref|YP_002419498.1| flagellar biosynthesis protein FlhB [Methylobacterium
           chloromethanicum CM4]
 gi|240137212|ref|YP_002961681.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
 gi|218520985|gb|ACK81570.1| flagellar biosynthetic protein FlhB [Methylobacterium
           chloromethanicum CM4]
 gi|240007178|gb|ACS38404.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
          Length = 353

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  ++KTEA + +++ DA+ +G+ P SREA +F+S L  LI L  F       +  D  
Sbjct: 3   DDDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAGDFA 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L+ +
Sbjct: 63  PLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVLDRI 122

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL----TENYFTMLDFISA 179
            P + RVS   G  RI+  +  V F+KS VK + V  +  + L    T     M    S 
Sbjct: 123 TPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVDPSQ 182

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  IL  A   V  V I  ++ +A     D+ W+  +W   L+MS Q+IKDE KQ+ G+
Sbjct: 183 LPELILTVAIRLVSAVAIATIVIVAG----DLVWARLRWQRSLRMSHQDIKDEHKQTEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+LI
Sbjct: 239 PSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLI 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++ +
Sbjct: 299 ALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 351


>gi|163850079|ref|YP_001638122.1| flagellar biosynthesis protein FlhB [Methylobacterium extorquens
           PA1]
 gi|163661684|gb|ABY29051.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
           PA1]
          Length = 353

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 204/353 (57%), Gaps = 8/353 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  ++KTEA + +++ DA+ +G+ P SREA +F+S L  LI L  F       +  D  
Sbjct: 3   DDDKESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAGDFA 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L+ +
Sbjct: 63  PLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVLDRI 122

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL----TENYFTMLDFISA 179
            P + RVS   G  RI+  +  V F+KS VK + V  +  + L    T     M    S 
Sbjct: 123 TPKWSRVSPMAGFTRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVDPSQ 182

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  IL  A   V  V I  ++ +A     D+ W+  +W   L+MS Q+IKDE KQ+ G+
Sbjct: 183 LPELILTVAIRLVSAVAIATIVIVAG----DLVWARLRWQRSLRMSHQDIKDEHKQTEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+LI
Sbjct: 239 PSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLI 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++ +
Sbjct: 299 ALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 351


>gi|188579884|ref|YP_001923329.1| flagellar biosynthesis protein FlhB [Methylobacterium populi BJ001]
 gi|179343382|gb|ACB78794.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
          Length = 354

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 213/354 (60%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTEA + +++ +A+ +G+ P SREA +F+S L  LI L  F       +  
Sbjct: 1   MAEETDHESKTEAATERRVREAIEKGDIPFSREAPVFASTLGLLIALALFARGQASQLAR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D   LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L
Sbjct: 61  DFAPLLDDPRGFALETGGDAMLLLSRVALAAGRFLLPILLILAVCSLTASLLQNLPRFVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G+ RI+  +  V F+KS VK + V  +  + L       ++ +  +
Sbjct: 121 DRIQPKWSRVSPMAGLSRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           P S L     TV  + ++  + IAT+ ++  D+ W+  +W   L+MS+Q+IKDE KQ+ G
Sbjct: 181 P-SQLPELILTV-SIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSRQDIKDEHKQTEG 238

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+L
Sbjct: 239 DPSVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVLAKGQDL 298

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           IA ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++ +
Sbjct: 299 IALRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 352


>gi|254473324|ref|ZP_05086721.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
 gi|211957440|gb|EEA92643.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
          Length = 353

 Score =  238 bits (608), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+  PD+KT+ P+ KK+ DAL +GN P+S+EAS+ +S+L  L+ L F        +  
Sbjct: 1   MSEDQDPDSKTQEPTEKKVRDALEKGNIPVSKEASVLASMLGLLLILSFIAVDKAQGLVQ 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +  +      +  + L++ ++      + P + L + FG+ S  +Q  P L L
Sbjct: 61  FLKWFLDNPGEISFVSAAEPLQLMSAVAFELVWFLGPIVALLIFFGLASSFMQNTPRLVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P   ++SL++G  R++S+N  + F+KS  K++ V  +  + L       L  + ++
Sbjct: 121 DRIEPKLSKISLKKGFGRLFSVNGAMEFIKSLFKLVTVIVVAALVLKSQQAVALTSMYSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +          +L  I +    L   D+  +  QW   L+MS QE+KDE KQ+ G+P
Sbjct: 181 PTQLPQLILSVAMTLLSGICVATIFLVGFDLVLARFQWRKNLRMSHQELKDEFKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +S+AR R R +MM +   AT+++ NPTH+A+AL Y +  + AP +VAKGQ++IA
Sbjct: 241 LIKARLRSLARDRARKRMMSSVQDATVVVANPTHFAVALYYERDGDQAPRVVAKGQDIIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K++++AY H++P+ E+  LARSL+  V I+ +IP  +Y+AVA++I  +Y K+
Sbjct: 301 LKIKELAYIHDVPVVEDRQLARSLYAAVEIDQSIPEEYYRAVAEIISYVYLKR 353


>gi|239834455|ref|ZP_04682783.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG
           3301]
 gi|239822518|gb|EEQ94087.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG
           3301]
          Length = 356

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 200/349 (57%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL +GN P SRE  + + I + LI  +F   P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L   L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+  +  V F+KS  K +    I+ +          D ++++
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRSGQVEFLKSLAKFLAASVIVFVVFFSGNSLFTDAVASD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       + ++L+  +L I  +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+     AT+I+ NPTH+++ALRY   ++ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            K+R+IA +H+IPIFE+  LAR+L+KQV ++  I P FYKAVA+LI  I
Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELIRVI 349


>gi|153011537|ref|YP_001372751.1| flagellar biosynthesis protein FlhB [Ochrobactrum anthropi ATCC
           49188]
 gi|151563425|gb|ABS16922.1| flagellar biosynthetic protein FlhB [Ochrobactrum anthropi ATCC
           49188]
          Length = 356

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL +GN P SRE  + + I + LI  +F   P     T+
Sbjct: 1   MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPA----TT 56

Query: 61  DLHVLLASATQR-------KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L V L     R         ED S    L   L+L+    ++P  ++  + GI +   Q
Sbjct: 57  KLAVFLRELIDRPEDWLLNSAEDASR---LFGVLALAVGAALVPVFIIIPLAGIAASAFQ 113

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
             P      ++P   R+S  +G +RI+     V F+KS  K +    I+ +         
Sbjct: 114 NAPRFVGERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKFLAASVIVFVVFFNGNSLF 173

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
            D ++++P ++       + ++L+  +L I  +   D+ WS   W  +L+M++QE+KDE+
Sbjct: 174 TDAVASDPSALPEFLRENMVRLLVANVLAITAIAAFDLAWSRIHWRQELRMTRQEVKDEL 233

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQS G+P++K+R +S+ R R R +M+     AT+I+ NPTH+++ALRY   ++ AP++VA
Sbjct: 234 KQSEGDPLVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPIVVA 293

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           KGQ+LIA K+R+IA +H+IPIFE+  LAR+L+KQV ++  I P FYKAVA+LI  I
Sbjct: 294 KGQDLIALKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELIRVI 349


>gi|328545474|ref|YP_004305583.1| flagellar biosynthetic protein FlhB [polymorphum gilvum
           SL003B-26A1]
 gi|326415215|gb|ADZ72278.1| Flagellar biosynthetic protein FlhB [Polymorphum gilvum
           SL003B-26A1]
          Length = 358

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 212/358 (59%), Gaps = 8/358 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    + KTE P+ KKI DA+ +GN P S+EAS+ ++ LA L+   F    G   + S
Sbjct: 1   MSDQPDKETKTEEPTEKKIRDAIEKGNTPTSKEASVLATFLAILLIGSFATVTGARRLVS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+  A    L + +  + L   L+L A R + P +    + G+ +   Q  P +  
Sbjct: 61  GLSGLIDDAGGFTLGNGADALLLTHALALEAGRFLAPIVATLAVAGLAAAWFQNAPRIVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI--- 177
           + +KP   R+SL +G +R++ I   V F K+ +K   +  I  + L  N   +++ +   
Sbjct: 121 HRIKPDPSRLSLLKGWQRLFGIQGAVEFGKALLKFGAISLIALLLLRANEAGLVNAMFSD 180

Query: 178 -SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            SA P +IL+ A   +  + I  ++ +A     D+ W+   W   L+M++QEIKDE KQ+
Sbjct: 181 PSALPETILHLAMRLLSGICIATIVLVA----FDLVWARVHWRQNLRMTRQEIKDEHKQT 236

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P++K RQ+S+AR R R++MM A  +AT++I NPTH+A+ALRY + E  AP++VAKGQ
Sbjct: 237 EGDPLVKARQRSLARDRARNRMMAAVPKATLVIANPTHFAVALRYDRDETAAPIVVAKGQ 296

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +LIA K+R+IA +++IP+ E   LARSL+    I+  IPP FY+ VA++I  +Y +K+
Sbjct: 297 DLIALKIRQIAEDNDIPVIENRELARSLYASTEIDRMIPPQFYRMVAEVICYVYSRKM 354


>gi|27381988|ref|NP_773517.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA
           110]
 gi|27355158|dbj|BAC52142.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 361

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 214/357 (59%), Gaps = 8/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE P+ KK+ D+L +G  P+SREAS+F+S+ A ++  +F    G+  +T 
Sbjct: 1   MAETTDQESKTEEPTEKKVRDSLEQGKIPVSREASIFASMAALMVIQMFLIGQGVQQLTP 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL       L   +    LLT + L A R ++P L++ ++FG+ S L+Q  P L L
Sbjct: 61  TLKSLLDDPEGFPLATGADAQNLLTVVGLEALRFLVPLLVVLLVFGLASSLLQNAPNLVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI----ILVGTIITISLTENYFTMLDF 176
             + P   R+S   G  R++    LV F KS  K+    ++V  ++  S  + +  M   
Sbjct: 121 QRIMPDLSRISPVSGWNRLFGTQGLVEFAKSLFKLASVTVVVAFVLRSSEAKAFEAMYTD 180

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
             A P  IL  A   V  + I  ++ +A    +D+ W+   W  +L+M++QEIKDE KQ+
Sbjct: 181 PVALPEMILNIAMRIVSAICIATIVLVA----IDLAWARFHWRRELRMTRQEIKDEHKQA 236

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P++K R +S+AR R R +M+ + SRAT++I NPTH+A+ALRY + EN AP++VAKG 
Sbjct: 237 EGDPLVKARLRSLARDRSRQRMIASASRATLVIANPTHFAIALRYNREENPAPLVVAKGM 296

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++IA K+R++A ++ IP+ E   LAR+L++ V ++  IP  F++ VA++IY +  K+
Sbjct: 297 DVIALKIREVAEKNRIPVIENKVLARALYEAVQVDQVIPAEFFRPVAEIIYFLQSKQ 353


>gi|323139657|ref|ZP_08074699.1| type III secretion exporter [Methylocystis sp. ATCC 49242]
 gi|322395089|gb|EFX97648.1| type III secretion exporter [Methylocystis sp. ATCC 49242]
          Length = 356

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 200/347 (57%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+D P+++TE  + KKI D + +G  P SR+      I A L    F        +  
Sbjct: 1   MSESDDPESRTEEATEKKIRDTVEQGKLPSSRDVGTAFGIFALLGAFSFLVDALTPRLIE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +L+A+  +  L   +     ++ ++L   R + P LL F++ G+ +   Q  P    
Sbjct: 61  ALGLLIANVGELPLRSGADAYRYVSVVNLELGRYLGPILLGFVIAGLVASFTQGAPQFVF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + V+P   R+S+  G KRI+ +  +V  +KS VK+I+VG  +  +   ++  ++D +  +
Sbjct: 121 DRVQPDLSRISIIAGWKRIFGLAGVVELLKSVVKMIIVGGAVIFAGLSDHAALVDAMRTD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +       +  +  ++ + +  L   D  W+  +W   L+MS+QE+K+E KQ+ G+P
Sbjct: 181 PSRLPGLTLRLIIHLTSVVAISVGVLAAADFVWARFKWRRDLRMSRQELKEEFKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R +S+A  R R +MM +   AT ++ NPTHYA+ALRY++ E  AP+++AKG++LIA
Sbjct: 241 LVKARMRSLAMDRSRRRMMASVPNATFVVANPTHYAIALRYVREEGGAPLVLAKGKDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            K+R+IA  +N+P+FE+  LAR+++  V ++  IP  FY+ VA+LI+
Sbjct: 301 LKIREIAERNNVPVFEKKELARAMYDMVEVDRMIPAEFYRPVAELIH 347


>gi|254720636|ref|ZP_05182447.1| flagellar biosynthesis protein FlhB [Brucella sp. 83/13]
 gi|265985680|ref|ZP_06098415.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13]
 gi|306837360|ref|ZP_07470239.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653]
 gi|264664272|gb|EEZ34533.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13]
 gi|306407552|gb|EFM63752.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653]
          Length = 356

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 205/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFAAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  +  I +   Q  P    
Sbjct: 61  FLRELIDHPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLASIAASAFQNAPRFVS 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIHPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFSDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|82940565|emb|CAJ44294.1| putative flagellar biosynthetic transmembrane protein FlhB
           [Rhizobium leguminosarum bv. viciae]
          Length = 213

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 151/203 (74%)

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
           F KS  K+++VG I+   L   YF  +D + ++P +IL      +RK++I++L+  A + 
Sbjct: 1   FGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQTILVRMMAAMRKIIIVMLIATAIVA 60

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
           + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+    RAT+
Sbjct: 61  IADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATL 120

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F Q
Sbjct: 121 VIANPTHYAVALRYAREENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQ 180

Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350
           V I+S IP VFYKAVA+LI+++Y
Sbjct: 181 VSIDSVIPSVFYKAVAELIHRVY 203


>gi|158422263|ref|YP_001523555.1| flagellar biosynthesis protein FlhB [Azorhizobium caulinodans ORS
           571]
 gi|158329152|dbj|BAF86637.1| flagellar biosynthetic protein [Azorhizobium caulinodans ORS 571]
          Length = 359

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 210/356 (58%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++   ++KTE  + +K+ DAL +GN P SRE +LF+S+L  L  L FF    +  +T 
Sbjct: 1   MSDDTDKESKTEEATERKVSDALEKGNVPYSRETALFASLLGILGVLTFFVVNPVRILTV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L   L +     L      + L   + L   ++++P +LL    G+ + L Q  P L L
Sbjct: 61  ELTHFLDNPAGFTLAGSDDAIALAWGVLLLMGQVLLPAVLLLAAAGLAASLFQNTPRLVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N ++P F R+   +G  RI+S +  + F KS  K+++V  I  + L      +++ + ++
Sbjct: 121 NRIQPQFSRIDPMKGWTRIFSRDGGIEFGKSAFKLVVVAVICGVLLMSERDKVMNAMYSD 180

Query: 181 P----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           P      IL  A   +  V +  ++ +A    LD+ WS   W ++L+M+KQE+K+E+KQ 
Sbjct: 181 PLLMPSVILSLATRLISAVCVATIVLVA----LDLVWSRFHWRAELRMTKQEVKEEMKQQ 236

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P++K R +S+A+ R R +MM +  +AT+++ NPTHYA+AL Y + +  AP +VAKG 
Sbjct: 237 EGDPMVKARMRSLAQQRARQRMMSSVPKATLVVANPTHYAIALYYDRQKGGAPQVVAKGT 296

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +LIA K+R+IA   +IP+ E+  LAR+++  V ++  IPP FYK VA+++Y IY +
Sbjct: 297 DLIALKIREIAERCSIPVIEDKPLARAMYDAVEVDQWIPPEFYKPVAKILYFIYSR 352


>gi|300024611|ref|YP_003757222.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526432|gb|ADJ24901.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 360

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 215/353 (60%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D   ++TE  + KK+ DA N+GN P SRE   F  ++A L+ +          + S
Sbjct: 1   MSEQDQ-QSRTEEATDKKLLDARNDGNVPSSREVPNFLYLMAALLVIAVLGQTFASHLGS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LLA+A   +L +   ++ L   +  +A+ +  P +L F   G+ + + Q  P+   
Sbjct: 60  LLVGLLANAGSIRLGNGGDVMLLFDVVGKAAAVVTAPIILAFGAAGVIASVAQNPPIPIA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P   R+S  +G+KR++S++ L  F+K  +++++V       L   +    + I  +
Sbjct: 120 KRVIPDISRLSPAKGLKRMFSLSGLFEFLKLSLRLVVVVVTSVAILMYMWHDFTNSIWND 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +IL  +  +V  +LI + L   TL + D+  ++  W   L+M++QEIKDE KQ  G+P
Sbjct: 180 PSAILTLSQKSVVALLISLALMSFTLLIFDLPVAHVLWRRSLRMARQEIKDEQKQMEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R++SIA++R R +M++  S+ATI+I NPTH+A+ALRY+++E  AP +VAKGQ+LIA
Sbjct: 240 LMKARRRSIAKARSRQRMLKGVSKATIVIANPTHFAVALRYVRSEGGAPRVVAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E+ IP+ E+ +LARSL+ +V ++  IP  FY+A+A+++ ++  ++
Sbjct: 300 LKIRRIAEENAIPVIEDKALARSLYAKVEVDQMIPAEFYRAIAEILIRLQARR 352


>gi|319409199|emb|CBI82843.1| Flagellar biosynthetic protein flhB [Bartonella schoenbuchensis R1]
          Length = 356

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 209/356 (58%), Gaps = 8/356 (2%)

Query: 4   NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           ++ PD  +KTE P+  KI     +GN P SRE  +FSS+L+  +  +F   P I  ++  
Sbjct: 3   DEKPDKESKTEEPTEHKIHKEEEKGNLPFSRELPIFSSLLSFSVISIFIAFPAISQLSHF 62

Query: 62  LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           L   L      ++   ED+ H+++L+     +    + P L++  + GI +  IQ +P +
Sbjct: 63  LLQWLERPESWRINTAEDVKHLIYLVGG---NVGLALAPILIIIPLIGISASAIQHVPRI 119

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
            +  ++P + RVSL  G +RI+S   LV F+KS  K+I V  I+ I   +N    ++ + 
Sbjct: 120 IMERIRPQWSRVSLSNGFERIFSKAGLVEFLKSLTKLIGVSIIVYIMFFKNNTIFINALL 179

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  ++  +    +  + +  ++ +A +   D+ WS   W  KL+MSKQEIK+E K   G
Sbjct: 180 TDAPALPEYIREKLVGLSLSFIVAVAAIAGFDLAWSRFHWRQKLRMSKQEIKEEHKSLEG 239

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP+IK R +S+A  R+R +M+     AT+I+ NPTH+++ALRY    + APV+VAKGQ++
Sbjct: 240 NPMIKARMRSLAHDRMRLRMISNVPTATLIVANPTHFSVALRYKPPLDYAPVVVAKGQDI 299

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +A ++R+IA E++IP+ E   LAR+L+KQV ++  IPP  Y++VA LI  I  +KI
Sbjct: 300 LALQIREIAVENDIPVIENVELARTLYKQVEVDQVIPPELYESVAALIRFINSQKI 355


>gi|83309718|ref|YP_419982.1| flagellar biosynthesis protein FlhB [Magnetospirillum magneticum
           AMB-1]
 gi|82944559|dbj|BAE49423.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1]
          Length = 355

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 209/354 (59%), Gaps = 19/354 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+   D+KTE P+ +K+  A  +GN P S+E  +++S++  L+ ++  F+P    +  
Sbjct: 1   MAEDS--DDKTEEPTDRKLSQAREQGNIPTSQEVKIWASLVGALV-VVTLFAP---YMAR 54

Query: 61  DLHVLL------ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
           D+  LL        A     ED+     LL+ +++   +L+I  +++ ++  I S + Q 
Sbjct: 55  DIGRLLLPFVEHPHAFPMGREDVGQ---LLSGITVDMIKLLIMPMMMLVVLAIASAMGQS 111

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             +   + +   F ++S  +G++RI+S  NLV F+KS  K+  +G +I + L  +     
Sbjct: 112 GLMFLPDKLTLDFGKLSPGKGLQRIFSGRNLVEFVKSLFKVSAIGFVIFLILKSHMSEYA 171

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDE 232
              + +  ++L +    V  ++I+++L +  L   D  W Y +W    ++KM+KQEIKDE
Sbjct: 172 GLAALDLMAVLDYLRHQVITMIIVVVLMVFVLAAAD--WFYQRWAFTQQMKMTKQEIKDE 229

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            KQ+ G+P+IK R +++   R R +MM A  RA++++TNPTHYA+AL+Y Q    APVLV
Sbjct: 230 HKQTEGDPMIKGRLRALRMQRARQRMMAAVPRASVVVTNPTHYAVALQYDQDSMGAPVLV 289

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AKG +LIAK++R +A E+ +PI E P LAR+L+  V ++  IPP  YK VA++I
Sbjct: 290 AKGVDLIAKRIRDLATENEVPIVENPPLARALYATVELDQEIPPEHYKTVAEII 343


>gi|188581880|ref|YP_001925325.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
 gi|179345378|gb|ACB80790.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
          Length = 355

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 193/346 (55%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MADESDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSAKPMAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    + A  L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGSIPSDAGTYLGVALRAGWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+   +  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGTDAWVNFGKGLAKIIVVGTIAGAILWNEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L        K++  +L   A + + D  +  H+W+++L+M+K+E+K E K+S G+P
Sbjct: 180 PGAALQGTLTLALKMMGGMLAAYAAIALGDALYQRHRWHTRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTHYA+ALRY +T   APV VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHYAVALRY-ETGMAAPVCVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R +A +H++P+ E P LAR+L   V +++ IP   Y+AVA++I
Sbjct: 299 LRIRAVAADHDVPVLENPPLARALHATVEVDAEIPAEHYRAVAEVI 344


>gi|319406964|emb|CBI80601.1| Flagellar biosynthetic protein flhB [Bartonella sp. 1-1C]
          Length = 356

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 206/355 (58%), Gaps = 8/355 (2%)

Query: 4   NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           ++ PD  ++TE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T  
Sbjct: 3   DEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLTYF 62

Query: 62  LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           L   L      ++   ED+ H+++LL     SA   + P L+L  +  I +  +Q +P  
Sbjct: 63  LIQWLERPESWRINTAEDVKHLIYLLGG---SAGLALAPILILIPLLSITASAVQNVPKF 119

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
            +  ++P + R+S   G KRIYS   LV F+KS  K+I V  II +   ++    ++ + 
Sbjct: 120 VIERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYMIFFKSNTIFINALL 179

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  ++  +    +  + +  +  +  L  LDI WS   W  +L+M+KQEIK+E K   G
Sbjct: 180 TDASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEG 239

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP++K R +S++R RIR +M+     AT+IITNPTH+++ALRY    + APV++AKG ++
Sbjct: 240 NPMVKARMRSLSRDRIRRRMIANVPTATLIITNPTHFSVALRYKPPLDYAPVVIAKGLDI 299

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A  +R+IA EH IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++K
Sbjct: 300 LALHIREIAVEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354


>gi|319403947|emb|CBI77535.1| Flagellar biosynthetic protein flhB [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 356

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 205/355 (57%), Gaps = 8/355 (2%)

Query: 4   NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           ++ PD  ++TE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T  
Sbjct: 3   DEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLTYF 62

Query: 62  LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           L   L      ++   ED+ H+++LL     S    + P L+L  +  I +  +Q +P  
Sbjct: 63  LIQWLERPESWRINTAEDVKHLIYLLGG---SVGLALAPILILIPLLSITASAVQNVPRF 119

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
            +  ++P + R+S   G KRIYS   LV F+KS  K+I V  II I   ++    ++ + 
Sbjct: 120 VIERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYIIFFKSNTIFINALL 179

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  ++  +    +  + +  +  +  L  LDI WS   W  +L+M+KQEIK+E K   G
Sbjct: 180 TDASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEG 239

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP++K R +S++R RIR +M+     AT+I+TNPTH+++ALRY    + APV++AKG ++
Sbjct: 240 NPMVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGLDI 299

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A  +R+IA EH IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++K
Sbjct: 300 LALHIREIAIEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354


>gi|319405388|emb|CBI79007.1| Flagellar biosynthetic protein flhB [Bartonella sp. AR 15-3]
          Length = 356

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 204/361 (56%), Gaps = 30/361 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           ++KTE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T  L   L 
Sbjct: 9   ESKTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICVFISFPAISKLTYFLVQWLE 68

Query: 68  SATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                ++   ED+ H+++L+     +    + P L+L  +  I +  +Q +P   +  ++
Sbjct: 69  RPESWRINTAEDVKHLIYLVGG---NVGLALAPILILIPLLSITASAVQNVPKFIIERIR 125

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P + R+S   G  RIYS   LV F+KS  K+I V  II           L F  +N  +I
Sbjct: 126 PQWSRISPANGFNRIYSKAGLVEFLKSLTKLIGVSLII----------YLIFFKSN--TI 173

Query: 185 LYHAFFT--------VRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDE 232
             +A  T        + K LI + L   T    L  LDI WS   W  +L+M+KQEIK+E
Sbjct: 174 FINALLTDASALPKYIHKELINLSLSFTTAVIALVGLDIAWSRFHWRQQLRMTKQEIKEE 233

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K   GNP++K R +S++R RIR +M+     AT+I+TNPTH+++ALRY    + APV++
Sbjct: 234 HKNLEGNPVVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVI 293

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKGQ+++A  +R+IA EH+IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++
Sbjct: 294 AKGQDILALHIREIAIEHDIPIFENITLARTLYKQVEIDQTIPTELYESVAALIRFINNQ 353

Query: 353 K 353
           K
Sbjct: 354 K 354


>gi|295690541|ref|YP_003594234.1| flagellar biosynthetic protein Flhb [Caulobacter segnis ATCC 21756]
 gi|295432444|gb|ADG11616.1| flagellar biosynthetic protein FlhB [Caulobacter segnis ATCC 21756]
          Length = 361

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 202/357 (56%), Gaps = 9/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++  P++KTE PS+K++ DA  +G+   S +    +S+   +  ++         +++
Sbjct: 1   MADDTDPESKTEEPSAKRLADARAKGDVVKSADIPQLASLAGAVSVVILAGGWLTRDLSA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF----GIGSYLIQRIP 116
            L+  +A A    L     +V +       A+   +P L+L M+     G  +++ Q   
Sbjct: 61  ALYPFIAHAGTIDLSSAGAMVVMK-----QATMAALPPLILVMLVSAFAGAIAHIAQSGF 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +L  + +KP F ++ L +G+ RI+ I+  V F KS VK ++ G I  + L  +   + + 
Sbjct: 116 LLTPSKLKPDFSKLDLIKGLGRIFGIDGFVQFAKSAVKFLVTGLIAWMVLKPHVGEVRNL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +  +P ++L  A    + +L+ +++F+      D  W   ++ ++++M+ QE+KDE KQS
Sbjct: 176 VGMDPAAMLPEALKLSKSLLMAVIIFLTATAAFDWFWQRQRFMNRMRMTLQEVKDEFKQS 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K +++ I   R R +MM+A  +AT+++ NPTHYA+AL+Y   E  AP+ VAKG 
Sbjct: 236 DGDPHVKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEAGETPAPLCVAKGV 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A K+R IA EH +P+ E+P LAR+L+  V ++  IP   ++AVA++I  I + K
Sbjct: 296 DELALKIRAIAEEHGVPVLEDPPLARALYASVEVDEEIPVEHFEAVAKVISFILNGK 352


>gi|319898624|ref|YP_004158717.1| flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73]
 gi|319402588|emb|CBI76133.1| Flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73]
          Length = 356

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/359 (35%), Positives = 208/359 (57%), Gaps = 16/359 (4%)

Query: 4   NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           ++ PD  ++TE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T  
Sbjct: 3   DEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICIFISFPAISKLTFF 62

Query: 62  LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           L          ++   EDI H+++L+     S    + P L+L  +  I +  +Q +P  
Sbjct: 63  LVQWFERPESWRINTAEDIKHLIYLVGG---SVGLALAPILILIPLLNIVASAVQNVPRF 119

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
            +  ++P + RVS   G KRIYS   LV F+KS  K+I V  I+ +   ++    ++ + 
Sbjct: 120 VIERIRPQWSRVSPANGFKRIYSKAGLVEFLKSLTKLIGVSLIVYMIFFKSNTIFINALL 179

Query: 179 ANPHSILYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            +  ++  +    +RK LI + L     +  L  LD+ WS   W  +L+M+KQEIK+E K
Sbjct: 180 TDASALPEY----IRKELISLSLSFTAAVVALVGLDLAWSRFHWRQQLRMTKQEIKEEHK 235

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
              GNP++K R +S+AR R R +M+     AT+I+TNPTH+++ALRY    + APV++AK
Sbjct: 236 NLEGNPMVKARMRSLARDRTRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAK 295

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           GQ+++A  +R+IA +++IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++K
Sbjct: 296 GQDILALHIREIAIKNDIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354


>gi|163852023|ref|YP_001640066.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
           PA1]
 gi|163663628|gb|ABY30995.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
           PA1]
          Length = 354

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 190/346 (54%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    + A  L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGGLPSDSGTYLGVALRAAWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+  ++  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L        K++  +L   A + + D  +  ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTH+A+ALRY +    AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPICVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R +A +H++P+ E P LAR+L   V ++  IP   Y+AVA++I
Sbjct: 299 LRIRAVATDHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVI 344


>gi|121601720|ref|YP_989412.1| flagellar biosynthesis protein FlhB [Bartonella bacilliformis
           KC583]
 gi|120613897|gb|ABM44498.1| flagellar biosynthetic protein FlhB [Bartonella bacilliformis
           KC583]
          Length = 356

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 204/356 (57%), Gaps = 8/356 (2%)

Query: 4   NDAPD--NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           ++ PD  ++TE P+  KI  A  +GN P SRE  + +S+++  +  +F   P + +++  
Sbjct: 3   DEKPDKESQTEEPTEHKIHKAEEKGNLPFSRELPILASLMSFSLITIFVAFPAMSNLSRF 62

Query: 62  LHVLLASATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           L   L       +   ED+ H+++L+   +L  +   +  ++  +     +  IQ  P +
Sbjct: 63  LTEWLERPESWHINTAEDVKHLIYLVGG-NLGLALAALLIIIPLISIAASA--IQNAPRI 119

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               + P + R+S   G  RI+     + F+KS VK+I V  I+ I   +N    ++ + 
Sbjct: 120 VTERISPKWSRISPANGFGRIFGKAGFIEFLKSLVKLIGVSIIVYIMFFKNNTIFINALL 179

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  ++  +    +  + +  ++ +A +   D+ WS   W  +L+M+KQE+KDE K   G
Sbjct: 180 TDAPALPEYIRQKLVDLSLSFIVAVAIIAGFDLAWSRFYWRQQLRMTKQEVKDEYKNLEG 239

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP++K+R +S+AR RIR KM+     AT+I+TNPTH+++ALRY    + APV++AKGQ++
Sbjct: 240 NPMVKSRMRSLARDRIRRKMIANVPTATLIVTNPTHFSVALRYKPPLDHAPVVIAKGQDI 299

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +A  +R+IA +H+IPI E+  LAR+L+KQV ++  IPP FY+ VA LI  I  +KI
Sbjct: 300 LALHIREIATKHDIPIIEDQPLARALYKQVEVDQTIPPEFYEGVAALIRFINSQKI 355


>gi|304392516|ref|ZP_07374456.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130]
 gi|303295146|gb|EFL89506.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130]
          Length = 354

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 199/353 (56%), Gaps = 9/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D   +K+E PS KKI+DAL++G   +SRE ++ +S++   +++  F       ++ 
Sbjct: 1   MSDED-DGSKSEEPSEKKIKDALDKGQTAVSREVAIVASLIVLTVFVSTFARDMAVGLSD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L   A   ++   S    L   ++  AS  +   L++ ++  + S  IQ  P +  
Sbjct: 60  KLGGLWEHAGTIRILSGSDAATLSGSIAAEASLALAAFLIMVIIGALISAFIQAEPRMVA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P ++R+S  +G KR++    L +F K   K+ +  T +   L      M+  +   
Sbjct: 120 DRITPKYERISPAKGAKRLFGQQGLFDFAKQLAKLSVATTAVVSVLAGAPEKMMQAMPLG 179

Query: 181 PHSILYHAFFTVRK----VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           P    Y+   TVR     +L  ILL +  + V+D+ W+   W   L+MS +E+KDE+KQS
Sbjct: 180 P----YYIGDTVRDLLGGMLTAILLAMVFVAVVDVVWTRFSWRKGLRMSLKEVKDEVKQS 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+PI+K RQ+S+AR R R++MMEA   AT+++ NP H A+ALRY  T++ APV+VAKGQ
Sbjct: 236 DGDPIVKARQQSVARDRARNRMMEAVPNATLVVANPIHVAVALRYDPTKDVAPVVVAKGQ 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             +  ++R+IA E  +P+ E   +AR L K VP+ + IP  FY  VA+LI ++
Sbjct: 296 ERLCWRIREIAEEAGVPVVENIPVARGLHKSVPLGALIPESFYVVVAELIKQL 348


>gi|218530777|ref|YP_002421593.1| flagellar biosynthetic protein FlhB [Methylobacterium
           chloromethanicum CM4]
 gi|218523080|gb|ACK83665.1| flagellar biosynthetic protein FlhB [Methylobacterium
           chloromethanicum CM4]
          Length = 354

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 189/346 (54%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    +    L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+  ++  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L        K++  +L   A + + D  +  ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDAFYQRNRWHKRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTH+A+ALRY +    AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPICVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R +A +H++P+ E P LAR+L   V ++  IP   Y+AVA++I
Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVI 344


>gi|240139290|ref|YP_002963765.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
 gi|254561746|ref|YP_003068841.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
 gi|240009262|gb|ACS40488.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
 gi|254269024|emb|CAX24985.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
          Length = 354

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 189/346 (54%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    +    L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+  ++  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L        K++  +L   A + + D  +  ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTH+A+ALRY +    AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPICVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R +A +H++P+ E P LAR+L   V ++  IP   Y+AVA++I
Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVI 344


>gi|312115253|ref|YP_004012849.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100]
 gi|311220382|gb|ADP71750.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100]
          Length = 353

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 206/352 (58%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++N   DNKTEAPS K++ D+L++   P SRE +  +++ A +++L+         V  
Sbjct: 1   MADNSETDNKTEAPSEKRLRDSLDKDGGPSSREVNSAAALFALVLFLMTMAPADFGEVVK 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L V +   +   LE+ +   F+L    L+     +P +L+ +   + +   Q  P L  
Sbjct: 61  NLSVFIEDPSGFSLENGADAFFILQLAGLTIFNFALPLVLMLLAATLLASFAQNPPTLIF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N + P   R+S + G+KR+++ + +V+ +KSF+K  +V     ++       +L   + +
Sbjct: 121 NKIAPDLARISPQAGLKRLFAFDAVVDLLKSFIKFGIVAIAFYVAFQGGAAALLVLQTDS 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +I        + +LI  L   A L V D+ W+  +W  KLKMS+Q++KDE KQS G+P
Sbjct: 181 ASTIELIKRLAFKAILICALA-CAVLAVADVFWTRFRWLRKLKMSRQDLKDEHKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ R ++IAR+R+R  MM +   AT++I NPTHYA+ALRY++ ++ AP  +AKG+N +A
Sbjct: 240 MLRARARAIARARVRRNMMTSVPNATVVIANPTHYAVALRYVRGQDRAPQTLAKGKNKLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++R IA ++N+P+ E  +LA+SL   V ++  IP  FYKAVA++I  I  K
Sbjct: 300 LRIRSIAEDNNVPVVENKALAKSLHDAVRVDQPIPHEFYKAVAEVIIYINKK 351


>gi|89068708|ref|ZP_01156094.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
 gi|89045671|gb|EAR51733.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
          Length = 373

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 200/351 (56%), Gaps = 7/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VT 59
           M+E++   +KTE PS +K++ A ++G+ P SRE    + ++  L+ L  F  P + S + 
Sbjct: 1   MAEDEDKHSKTEQPSERKLKKARDKGDVPASRETGT-AMVVFSLMLLSAFLIPSVGSGLV 59

Query: 60  SDLHVLLASATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           + L  L+  A Q +++     ++ +  L + L+    R++ P  LL ++  +   LIQ  
Sbjct: 60  AALGALIDVAGQVEIDSGRAGLADVSALSSELTGQVGRVLAPLFLLMIVGALFGVLIQGE 119

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V++L  ++P + ++S   G+KR++S + +V F+K+ +K+++V  I T  +     + + 
Sbjct: 120 TVVSLERIRPKYSKISPLGGVKRLFSADMIVEFLKNTLKVVIVAAIGTW-IARRAVSQVW 178

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             S  P ++       V  +L+     +    + DI W   QW  K +MS +E++DE K+
Sbjct: 179 MGSLAPEALPGFVRGEVTAMLMATAALLVPFAIADILWKRAQWTKKQRMSLKEVRDEHKE 238

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P IK ++  I R R R ++  A  +AT+IITNPTH+A+ALRY    + APV VAKG
Sbjct: 239 TEGDPFIKQKRTDIRRERARQRIATAVPKATVIITNPTHFAVALRYQPGVDQAPVCVAKG 298

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            + +A ++R++  E++IPI E   LARSL     I++ +P   ++A+A++I
Sbjct: 299 ADHVAARIRELGRENDIPILENKPLARSLHAVAEIDAVVPVEHWQALAEII 349


>gi|328543170|ref|YP_004303279.1| flagellar biosynthesis protein B [polymorphum gilvum SL003B-26A1]
 gi|326412916|gb|ADZ69979.1| Flagellar biosynthesis protein B [Polymorphum gilvum SL003B-26A1]
          Length = 359

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 193/349 (55%), Gaps = 8/349 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ K++++A  +G+ P S+E S + + LA    ++  F+P   +VT+
Sbjct: 1   MADDTDDSEKTEDPTQKRLKEAHEKGDLPKSQEVSTWFT-LAGAAMMIALFAP---AVTT 56

Query: 61  DLHVLLASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +L   L    +   E   D   +  L      S + +V   LL  +   +   L+Q   V
Sbjct: 57  ELGTQLKWYLEHAHEIPADGYALKALWRDTGQSVALIVGLPLLALVAMAVAGNLVQHEAV 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                +KP   +VS   G KR++S  +L+NF K  +KI++VG ++   L          I
Sbjct: 117 FTAEPIKPKLSKVSPLSGFKRLFSGQSLMNFAKGMLKIVIVGAVMVAVLWPQRDRAEAVI 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  S+L  A   V ++L  +L  +  +   D  W  H+W+ K KMS +E+K+E KQ+ 
Sbjct: 177 FVDVSSLLEEARGLVLQLLAAVLAIMTVVAGADYVWQRHKWFEKQKMSMRELKEEYKQTE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P++K + + +   R R +MM A  +AT+++TNPTHYA+ALRY +    AP+ VAKG +
Sbjct: 237 GDPLVKGKIRQLRMERSRKRMMAAVPQATVVVTNPTHYAVALRY-EEGMGAPLCVAKGTD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            IA K+R++A +H +P+ E P LAR+L+  V ++  IP   YKAVA++I
Sbjct: 296 AIALKIREVARQHEVPVVENPPLARALYASVDVDREIPEDHYKAVAEVI 344


>gi|254501745|ref|ZP_05113896.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
 gi|222437816|gb|EEE44495.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
          Length = 359

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 194/360 (53%), Gaps = 22/360 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DA ++G+ P S+E S + + LA    ++   +PG  +   
Sbjct: 1   MADETDDSEKTEDPTQKRLKDAHDKGDVPKSQEVSTWFT-LAGATLMIAIMAPGAAASLG 59

Query: 61  DL--------HVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
           +L        H +       K    D    V L+  L L A       L++  +FG    
Sbjct: 60  NLLKGYIEHAHQIPVDGYALKALWRDTGQSVALIVGLPLLA-------LVVMAVFG---N 109

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           LIQ  P+L    +KP   +VS   G KR++S  +LVNF K  VKI++VG ++   L  + 
Sbjct: 110 LIQHQPLLTAETIKPKLSKVSPLSGFKRLFSSESLVNFAKGMVKILVVGAVMVAVLWPHR 169

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
                 I A+   IL  A   + +VL  IL  +  +   D  +  ++W++K KMS +E+K
Sbjct: 170 DEAEIMIFADEMIILEEARILILQVLAAILAVMTVVAAADFVYQKNKWFNKQKMSLKEVK 229

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           +E KQ+ G+P +K + + +   R R +MM A   AT+++TNPTHYA+AL+Y +    AP+
Sbjct: 230 EEFKQTEGDPHVKGKIRQLRMERSRKRMMSAVPAATVVVTNPTHYAVALQY-EEGMGAPL 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            VAKG + +A ++R +A EH +P+ E P LAR+L+  V I   +P   +KAVA++I  ++
Sbjct: 289 CVAKGTDALALRIRDVAKEHEVPVIENPPLARALYASVEIEQEVPEEHFKAVAEVIGFVF 348


>gi|307945650|ref|ZP_07660986.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4]
 gi|307771523|gb|EFO30748.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4]
          Length = 359

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 198/356 (55%), Gaps = 12/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-YSVT 59
           M+++     KTE P+ K+++DAL++G+   S+E S + + LA    L+  F+P I  +V 
Sbjct: 1   MADDQDDAEKTEDPTQKRLKDALDKGDVAKSQEVSTWFT-LAGTTLLIALFAPTIGAAVG 59

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHL--SLSASRLVIPGLLL--FMMFGIGSYLIQRI 115
           + L   +  A      DI    F L  L      S  +I GL L   ++  I   ++Q  
Sbjct: 60  NHLKGFMEHA-----HDIPVDGFALKALWRDTGQSIALIVGLPLMALVVMAIAGNMVQHQ 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V     +KP   +VS   G KR++S ++LVNF K   KI +VG ++ + L  +      
Sbjct: 115 LVFTAETMKPKLSKVSPLSGFKRLFSKDSLVNFAKGLAKIFVVGALMVLVLWPHRDEADI 174

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            I A+P  +L  A F + ++L  ++ F+  +   D  +  ++W++K KMS +++KDE KQ
Sbjct: 175 MIFADPVILLEEARFLILQLLGAVMAFMTVVAAADYAYQKNKWFNKQKMSLRDVKDEYKQ 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P +K + + +   R R +MM A   AT+++TNPTH+A+AL+Y +    AP+ +AKG
Sbjct: 235 TEGDPHVKGKIRQLRMERSRKRMMAAVPDATVVVTNPTHFAVALKY-EEGMGAPLCLAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A K+R++A E  IP+ E P LAR+L+  V I   +P   YKAVA++I  +Y 
Sbjct: 294 TDAVALKIRELAKEKKIPVVENPPLARALYASVEIEQEVPEEHYKAVAEVIGFVYR 349


>gi|118588696|ref|ZP_01546104.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
 gi|118438682|gb|EAV45315.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
          Length = 359

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 194/346 (56%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ K++++A ++G+ P S+E S + ++    + +  F      S+  
Sbjct: 1   MADDSDDSEKTEDPTHKRLKEAHDKGDVPKSQEVSTWFTLAGATLMIAIFAPSTAVSLGE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L  A Q  ++  + +  L      S + +V   LL  ++  +   L+Q  P+L  
Sbjct: 61  MMKGYLEHAHQIAVDGYA-LKALWRDTGQSVALIVGIPLLALVIMAVAGNLVQHQPLLTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   +VS   G KR++S  +LVNF K  +KI +VG I+   +  +       + A+
Sbjct: 120 ETIKPKLSKVSPASGFKRLFSSESLVNFAKGMIKISVVGAIMVAVMWPHRDEAEVMVFAD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            + IL  A   + ++L  +L  +  +   D  +  ++W++K KMS +E+K+E KQ+ G+P
Sbjct: 180 TNIILEEARILILQLLSAVLAVMTVVAGADFIYQRNKWFNKQKMSLREVKEEYKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +   R R +MM A  +AT+++TNPTHYA+AL+Y +    AP+ +AKG + IA
Sbjct: 240 QIKGKIRQLRMERSRKRMMSAVPQATVVVTNPTHYAVALKY-EEGMGAPLCLAKGTDAIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R+IA E +IP+ E P LAR+L+  V I+  +P   YKAVA++I
Sbjct: 299 LKIREIAKESDIPVVENPPLARALYATVEIDQEVPEEHYKAVAEVI 344


>gi|144900464|emb|CAM77328.1| Type III secretion exporter [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 357

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 194/344 (56%), Gaps = 2/344 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           ++A D+KTE P+ K++ DA  EGN P + EA    S++   I L F      +++ + + 
Sbjct: 3   DEASDDKTEEPTGKRLGDARTEGNIPQTMEAKAMMSLVLAAIMLGFLAPDMAHNIKAVIT 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL-NH 122
             +      ++        LL         ++IP   L +  G+ + L Q    L +   
Sbjct: 63  PYIEQVHLMEVGPDGLGELLLHLSLGVLQSMIIP-FALVIFLGVVASLAQTKGFLWVPKK 121

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P FK+++  EG KRI+S+N L+   K  +K+ ++G ++   L  +   + +  +    
Sbjct: 122 IAPDFKKLNPLEGYKRIFSVNQLMELGKQLIKLTVLGLLLGWVLWGSIGEIENLANLELM 181

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +IL +    +  ++++ L+ +  L V D  +   +W  K+KM+KQE+KDE KQ+ G+P +
Sbjct: 182 AILEYISDKIFWMVLVTLMMVTLLAVGDYLFQRWRWMEKMKMTKQEVKDEHKQAEGDPQV 241

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + KS+   R R +MM A  +A ++ITNPTHYA+AL+Y      AP+LVAKG +L+AK+
Sbjct: 242 KAKIKSLRFQRARKRMMAAVPKADVVITNPTHYAVALKYDLDAMSAPILVAKGTDLVAKR 301

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A EH++PI E P +AR+LF  V ++  IPP  YKAVA++I
Sbjct: 302 IRDLADEHDVPIVENPPVARALFAAVELDQEIPPEHYKAVAEII 345


>gi|299131771|ref|ZP_07024966.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2]
 gi|298591908|gb|EFI52108.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2]
          Length = 356

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 197/344 (57%), Gaps = 4/344 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VTSDL 62
            +  ++KT+ P++K++EDA   G+   S E + +  ++A   +++  FS  I + +T  L
Sbjct: 3   EEGDEDKTQDPTAKRLEDAHKRGDVAKSIEVNTWF-MIAGATFIMSSFSGSIANKLTVPL 61

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
             LL  A + K +  S ++ +    ++  + L IP   L ++  +GS+LIQ  PV +++ 
Sbjct: 62  KNLLEHAGRMKTDGPSLLLLVGRLETVMLTALGIP-FALLIVAAVGSHLIQHRPVWSVDP 120

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P F ++S   G KR++      NF K   K+I++G ++ + +   +      +  +P 
Sbjct: 121 ITPKFSKLSPMSGAKRLFGKQAAANFAKGLFKVIVLGVVMAMVMWPEHERADVMVRIDPS 180

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            +L        K++  ++  +A +  LD  + Y  W+ + KMS QE+KDE KQS G+P I
Sbjct: 181 LMLDLTRSMALKLMGTVVAMLAIVATLDYLFQYRSWFERQKMSLQEVKDEYKQSEGDPHI 240

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R +++  +R+R +MM A   A+++ITNPTHYA+AL+Y +    AP+ VAKG +LIA K
Sbjct: 241 KGRIRALRVARMRKRMMAAVPTASVVITNPTHYAVALKY-ERGMPAPICVAKGVDLIAFK 299

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R++A  H+IP+ E   LAR+L   V I+  IP   Y AVA++I
Sbjct: 300 IREVAAAHDIPVVENVPLARALHASVEIDDEIPVEHYHAVAEVI 343


>gi|254470232|ref|ZP_05083636.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
 gi|211960543|gb|EEA95739.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
          Length = 358

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 194/350 (55%), Gaps = 10/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+     KTE P+ K+++DA  +G+ P S+E S + S++   + + F     + SV++
Sbjct: 1   MAEDTDDSEKTEDPTQKRLDDAFEKGDIPKSQEVSSWFSLVGTALVISFLAPTMVSSVST 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A A    + D   +VFLL         +V   LL  M   +   ++Q  P+   
Sbjct: 61  ILKGFFAHADTIAV-DPGALVFLLEITGPEILGVVALPLLTLMALAVVGNVVQHKPLWTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++S   G+KR++S ++L NF+K  VKII V   + + L       LD +   
Sbjct: 120 ERLKPKLNKISPLSGMKRLFSKDSLANFLKGLVKIIAVAAAVFLVLWPER-DRLDTVVFR 178

Query: 181 PHSILYHAFFTVRKVLIMIL-LFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              ++      VR++ IM++   +A +TV+   D+ W   +W+ K KM++QE+K+E KQS
Sbjct: 179 ETGLVLE---EVRELAIMVIGAILALMTVVAGADLVWQRKKWFEKQKMTQQEVKEEYKQS 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK + + +   R R++MM +   AT++ITNPTHYA+AL Y +    AP  VA G 
Sbjct: 236 EGDPKIKAKIRELRLQRSRNRMMASVPDATVVITNPTHYAVALSY-EEGMGAPQCVALGV 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + +A ++R++A E ++PI E P LAR+L+  + +N  +P   Y AVA++I
Sbjct: 295 DDLALRIREVAKESDVPIVENPPLARALYASIELNDYVPEEHYAAVAKVI 344


>gi|209884540|ref|YP_002288397.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
 gi|209872736|gb|ACI92532.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
          Length = 355

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 190/348 (54%), Gaps = 8/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+   D+KT+ P++K++E+A   G+   S E + +  +      +  F      S+T 
Sbjct: 1   MAEDS--DDKTQDPTAKRLEEAHKRGDVAKSIEVNTWFMVAGATFVMSSFSDSVASSITV 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--LLFMMFGIGSYLIQRIPVL 118
            L  LL  A + +++  S    L     L    LV  GL  LL ++  I S+L+Q  PV 
Sbjct: 59  PLKNLLQHAGEMRVDGAS---LLQLAARLEIMLLVALGLPFLLLVIAAIASHLVQHRPVW 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           + + + P + ++S   G KR++      NF K   K+I +G ++ + +   +      + 
Sbjct: 116 STDPITPKWSKLSPLAGAKRLFGKQAAANFAKGLFKVITIGVVMAVVMWPEHERADAMVR 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +P  +L        K++  ++  +A +  LD  + Y  W+ + KMS QE+KDE KQS G
Sbjct: 176 LDPSLMLDLTRSMALKLMGTVVAMLALVAALDYLFQYRSWFERQKMSLQEVKDEYKQSEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK R +++  +R+R +MM A   A+++ITNPTHYA+ALRY +    AP+ VAKG +L
Sbjct: 236 DPQIKGRIRALRMARVRKRMMAAVPTASVVITNPTHYAVALRY-ERGMPAPICVAKGVDL 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           IA K+R++A  H++PI E   LAR+L   V I+  IP   Y AVA++I
Sbjct: 295 IAFKIREVATAHDVPIVENVPLARALHASVEIDDEIPVEHYHAVAEVI 342


>gi|74317263|ref|YP_315003.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056758|gb|AAZ97198.1| Flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 390

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 191/356 (53%), Gaps = 17/356 (4%)

Query: 3   ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
           E+D    +TEAPS +++E A  EG    SRE + F         +L      ++++ S L
Sbjct: 4   ESD--QERTEAPSPQRLEKAREEGQVLQSRELATF--------VVLMTGGAALWAMASQL 53

Query: 63  HVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
              L+   +  L+       D +H++  L+     A+  + P LLL ++    S ++ R 
Sbjct: 54  GQTLSQIVRGGLQFHPAVARDSAHVMTQLSQQFFDATLALAPFLLLVVIATFASPILLRG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            + +     P FKR+S   G KR++S   LV  +K+  K+ L+G +    +  N   ++ 
Sbjct: 114 WLFSTKAFMPDFKRLSPLAGFKRMFSSQGLVELVKALAKVGLLGGVAAWLVWSNVEAIVS 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
                P + + H    + KV ++    +  + VLD+ +    +Y+KLKM+K++++ E K+
Sbjct: 174 LSLEAPTAAIGHMGDIIGKVFLLASGAMIFIVVLDLPYQLWNFYNKLKMTKEQLRQEAKE 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P +K R ++  R   R +MM     A +++TNPTHYA+AL+Y + +  AP +VAKG
Sbjct: 234 SEGDPHVKARIRAQQREVARRRMMAEVPSADVVVTNPTHYAVALKYSEGKMGAPRVVAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +L+A K+R+IA EH +P+ E P LAR+LF+   I + IP   Y AVA+++  ++ 
Sbjct: 294 ADLVAAKIREIAAEHRVPLLEAPPLARALFRHTDIGNEIPATLYAAVAEVLAYVFQ 349


>gi|163794129|ref|ZP_02188102.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199]
 gi|159180743|gb|EDP65262.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199]
          Length = 358

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 203/354 (57%), Gaps = 3/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVT 59
           MS++     KTE P+ KK+ DA  +G    S+E + F+S+LA L + +   +P +   + 
Sbjct: 1   MSDSQDDSQKTEEPTGKKLGDARKKGQIAQSKEVTNFASLLA-LTFAVTILAPYMAIQLY 59

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           S + V++  A   ++ D      +L  L +     + P L   M+ G+ + L Q   +  
Sbjct: 60  SSMAVVIEHAAVARI-DAGSTSEILMGLVIDTFLALAPTLGTVMVLGVAATLGQSGILFT 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + + P  +++S   G KR++S+ ++V F+K  +K+ +V  I  + ++       + ++ 
Sbjct: 119 TDPIMPKLEKLSPLAGFKRLFSLKSIVEFIKGIIKLAIVAFIAYVLMSPELDRAEELLTM 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +   +L      V ++++ +L F+A + + D  +  ++ Y +L+MS+Q+I+DE KQ+ G+
Sbjct: 179 DLIEVLKEIQTLVIRLMMGVLAFMAVVAIADYIYQRYEHYKQLRMSRQDIRDEHKQAEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK R + I   R R +MM A  +A ++ITNPTH+A+AL+Y  +   APV+VAKG + +
Sbjct: 239 PQIKARLRQIRADRARRRMMAAVPKADVVITNPTHFAVALQYDTSAMAAPVVVAKGSDAV 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R++A EH +PI E P LAR+LF  V I+  IP  +YKAVAQ+I  +Y  K
Sbjct: 299 AFRIREVAKEHKVPIVENPPLARALFASVEIDEQIPETYYKAVAQVISYVYRLK 352


>gi|253688980|ref|YP_003018170.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755558|gb|ACT13634.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 383

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 190/353 (53%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+   KTEAP+ +K E A  EG  P SRE    +S+L  +  L   +  G  ++   L 
Sbjct: 3   DDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWIGG-DAMAGRLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +++ +       I     +L H+      A+  +IP +   ++  + + L+    + + 
Sbjct: 59  RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAASALIPIMFGAVLVALSAPLLLGGVLFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K +FK++    G+KR++S  +L    K+ +K ++VG I T+ L  N+  +L  IS +
Sbjct: 119 KSLKVNFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLISES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P S L  A         +I++ +  +   D+ W       KL+MSKQEI+DE KQS G+P
Sbjct: 179 PISALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY + + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEIGEHIPAALYAAVAEVLAWVYQLK 351


>gi|261821144|ref|YP_003259250.1| flagellar biosynthesis protein FlhB [Pectobacterium wasabiae
           WPP163]
 gi|261605157|gb|ACX87643.1| flagellar biosynthetic protein FlhB [Pectobacterium wasabiae
           WPP163]
          Length = 383

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 188/353 (53%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTEAP+ +K E A  EG  P SRE    +S+L  +  L   +  G  ++   L 
Sbjct: 3   EDSDLEKTEAPTPQKEEKAREEGQVPRSRE---LTSVLMMVAGLAILWMGG-DAMAGRLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           V++A +       I     +L H+      A+  +IP +L  ++  + + ++    + + 
Sbjct: 59  VIVAQSLNFDYATIGDDTQMLRHVGSLLHQAASALIPIMLGSVLVALSAPMLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S  +L    K+ +K ++VG I T+ L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGVISTLFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A         +I++ +  +   D+ W       KL+M+KQEI+DE KQS G+P
Sbjct: 179 PIAALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY   + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  +H +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGIDHRVPILEAPPLARALFRHSEVGEHIPAALYAAVAEVLAWVYQLK 351


>gi|167645349|ref|YP_001683012.1| flagellar biosynthesis protein FlhB [Caulobacter sp. K31]
 gi|167347779|gb|ABZ70514.1| flagellar biosynthetic protein FlhB [Caulobacter sp. K31]
          Length = 360

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 192/350 (54%), Gaps = 10/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++    +KTE P++KK+ DA  +G+ P S + S  +S+      ++         + +
Sbjct: 1   MADDQDEASKTEEPTAKKLSDARAKGDVPKSADISQLASLSGAFGVVVIAGGWLTRDLVN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM----MFGIGSYLIQRIP 116
            L    A A    +E        +  ++ +A    +P L+L M    + G  + + Q   
Sbjct: 61  QLTPFFAHAGTMDVEG------GVNAIAKTAVMAALPALVLVMVVSGLLGAAANVAQSGF 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +L+ + +KP  +++ + +G+KR++ ++  V F KS VK ++ G I    +  +   + + 
Sbjct: 115 ILSADKIKPDLQKLDIIKGLKRVFGMDGFVQFAKSAVKFLVTGLIAWYVVKPDAAQIPNL 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +  +  +I+  +     K+  M+L+F+      D  W   ++  +++MS Q+IKDE KQS
Sbjct: 175 VGMDVGAIIPLSMKLCTKLFWMVLIFLMATAGFDWFWQRLRFNKRMRMSLQDIKDEHKQS 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K +QK +   R R +MM A  +AT++I NPTHYA+AL+Y Q EN AP+ VAKG 
Sbjct: 235 EGDPHVKGKQKQLRMQRSRQRMMAAVPKATVVIMNPTHYAVALKYEQGENAAPICVAKGV 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + +A ++R +A E  + I E+P LAR+L+  + ++  IP   ++AVA++I
Sbjct: 295 DDLALRIRAVAEEAGVYILEDPPLARALYAAMDVDEQIPAEHFEAVAKVI 344


>gi|84502407|ref|ZP_01000543.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis
           HTCC2597]
 gi|84389219|gb|EAQ02016.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis
           HTCC2597]
          Length = 374

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 194/350 (55%), Gaps = 4/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   NKTE P+ +K+  A  +G+ P SRE     S+++  +  +FF      ++  
Sbjct: 1   MAENEDQTNKTEEPTPRKLRQAREKGDVPSSREVGNMMSVMSLFLVAIFFLPQLGPTLVG 60

Query: 61  DLHVLLASATQRKL-EDISHIVFL---LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            L  +  +A Q ++ ED+  +  L      LS   + ++ P     ++  + + LIQ   
Sbjct: 61  TLRRVFENAGQVRIGEDVQGLRDLGQVTMELSGGLATVLAPVAATMLLAAVAAVLIQGEV 120

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V+ ++ + P   +++  +G K+I+SI++ V F+KS  K+++VG I           +   
Sbjct: 121 VVAVDRITPKLSKINPIQGFKKIFSIDSFVEFLKSVAKVLVVGGISIYIAQIAVRGIWQT 180

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
               P S+L +       +LI + L +  L+V D+ W   QW  K +MS QEI+DE K+ 
Sbjct: 181 EGVTPESVLSYIGRYAALLLITVTLLLTVLSVADVMWKRFQWMKKQRMSVQEIRDEHKEM 240

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P+I+ ++    R R + ++  A  +AT+++TNPTH+A+ALRY    + APV VAKG 
Sbjct: 241 EGDPLIRAKRAEQRRKRAQQRITTAVPQATVVLTNPTHFAVALRYDNGTDQAPVCVAKGV 300

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +L+A ++RK+A E+ +P+ E   LAR+L+    I+  IP   ++AVA++I
Sbjct: 301 DLMAAQVRKVARENEVPVVENKPLARALYDVAEIDEEIPFEHWQAVAEII 350


>gi|306820134|ref|ZP_07453782.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551912|gb|EFM39855.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 379

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 198/358 (55%), Gaps = 26/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIYSVTSD--- 61
            KTE  + KK ED   +GN   SRE    ASLF+++ A     +  FS  I  V  D   
Sbjct: 27  EKTEEATPKKKEDTRKKGNVLQSRELTGAASLFAAVFA-----INTFSKEILKVIVDAWN 81

Query: 62  --LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
               +L +     +++       LL     +   ++IP +L+       ++L+Q+  V N
Sbjct: 82  YYTGMLNSFELTNQMQAYKLFTTLLIFCVKAMLFIIIPVVLV-------AFLVQKAQVGN 134

Query: 120 L---NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +     ++P  +R+S+  G KR++S+ + V  +KS +KI+LVG +    + +N   ++  
Sbjct: 135 IFTAETIRPKLERISILSGFKRMFSMQSTVTLIKSLLKIMLVGYVGYAYIKDNMPLVMKS 194

Query: 177 ISANPHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            S N     Y  F F++   L M+ + IA L + D  +  H +   ++MSKQEIKDE KQ
Sbjct: 195 FSLNDKQFSYMLFHFSINMALRMVYVIIA-LGIFDYVYQRHSYNKNIRMSKQEIKDEYKQ 253

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P IK++ K   R     +MM+   +A +IITNPTH+A+AL+Y + + DAP +VAKG
Sbjct: 254 SEGDPQIKSKIKERQRQSAMRRMMQDLPKADVIITNPTHFAVALKYDEDKYDAPYVVAKG 313

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           Q+ IAKK+R+ A E +IPI E   LAR+L+ ++ I S I P  Y+AVA+++  I+  K
Sbjct: 314 QDFIAKKIREKAKELDIPIVENKPLARALYSEIDIGSVITPQLYEAVAEVLAYIFSLK 371


>gi|311279222|ref|YP_003941453.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1]
 gi|308748417|gb|ADO48169.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1]
          Length = 387

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 198/367 (53%), Gaps = 29/367 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF----------- 49
           +++N   ++KTEAP+ ++++ A  EG  P SRE +    +L  +  L F           
Sbjct: 4   VADNSDSEDKTEAPTPQRLDKAREEGQIPRSRELTSLLILLVGVCVLWFGGESMARRLAA 63

Query: 50  FFSPGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
             S G++   S+ +D +++L        + +  ++ L+T + + A  +V P +L  ++F 
Sbjct: 64  LLSSGLHFDHSIVNDPNLILGQIILLIKQAMLALLPLITGVVVVA--IVAPMMLGGLVFS 121

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
             S   +             F +++   GIKR++S  +    +K+ +K +LVG +    +
Sbjct: 122 PKSLAFK-------------FDKLNPLPGIKRLFSAQSAAELLKAILKSVLVGCVAGTYV 168

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             ++  M+  IS +P + + +A   V    +++ L +  +   D+ W  H    KL+MS+
Sbjct: 169 WSHWPDMMRLISESPLAAMGNALNMVGLCAMLVALGVIPMVGFDVFWQIHSHIKKLRMSR 228

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQ+ G+P +K R + + R+  R +MM    +A +I+TNPTHY++AL+Y++ + 
Sbjct: 229 QDIRDEFKQNEGDPHVKGRIRQMQRAAARRRMMGDVPKADVIVTNPTHYSVALQYVEGKM 288

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  LIA ++R+I  EH +P+ E P LAR+L++   I   IP   Y AVA+++
Sbjct: 289 SAPKVVAKGAGLIALRIREIGQEHRVPVLEAPPLARALYRHAEIGQQIPGTLYAAVAEVL 348

Query: 347 YKIYHKK 353
             ++  K
Sbjct: 349 AWVWQLK 355


>gi|209963536|ref|YP_002296451.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
 gi|209957002|gb|ACI97638.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
          Length = 373

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 188/350 (53%), Gaps = 8/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      KTE P+ +K+++A  +G+ P+SRE S    +LA +I +    S     +T 
Sbjct: 1   MSERPEDSQKTEEPTQRKLDEARRKGDVPVSREVSSMMLVLAGVILVGGLGSWMGGHLTD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL  L+ +     L+  +    LL  L+     +++P   + +   + + + Q   V   
Sbjct: 61  DLLPLVENPGDFPLQAPADAFRLLAWLAGEIGLVLLPAAAILLAAVLLAAVGQNGIVFTT 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM----LDF 176
             +KP  +R+S   G++R+ S+  LV F+K   K+  VG  + + L      M    L  
Sbjct: 121 ERLKPKLERISPIAGLRRLVSLRTLVEFLKGLAKVAAVGAALLVVLEPELHRMEALALTD 180

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++A P   L  +  T  ++L+  L+    + +LD+ W    W  + +M+ QE+K+E +Q+
Sbjct: 181 VAALPE--LLTSVLT--RLLVATLIASIAIALLDLVWQQFSWRRQQRMTLQELKEEFRQA 236

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R   + R R R +M     RAT++ITNPTH+A+ALRY  +E  APV +AKG 
Sbjct: 237 EGDPHVKARISQLRRERARQRMFSDIPRATVVITNPTHFAVALRYDLSEAPAPVCLAKGM 296

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +L+A+++R+ A  H +PI E P LAR+L K V I   + P  Y AVA++I
Sbjct: 297 DLVARRIREAAMGHKVPIVENPPLARALHKSVEIGEEVQPEHYMAVAEVI 346


>gi|291278828|ref|YP_003495663.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans
           SSM1]
 gi|290753530|dbj|BAI79907.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans
           SSM1]
          Length = 359

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 203/364 (55%), Gaps = 23/364 (6%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-------FSPG 54
            +NDA   +TE  + ++ + A  EGN P SRE S     L  +I+L F+       FS  
Sbjct: 3   EKNDA--ERTEEATPRRRQKAREEGNVPKSRELSTAIIFLISVIFLYFYTPILIDNFSKL 60

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQ 113
           I    S +   L+ +   +L +     +L     L A  LV+ GLL+    FG       
Sbjct: 61  ISHTLSKVGYTLSKSATVELFNFVFQFYLKVLFPLFAL-LVVAGLLVNVAQFGF------ 113

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +++   ++P + R++   G++ ++S  +LV  +KS  KI +VG +  I +      +
Sbjct: 114 ---LISPKALEPKWDRLNPINGLQNLFSKRSLVELIKSIFKIFVVGFVAYIIVRGKIGVI 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+   A+P S +      V ++   I L I  +++LD  +   Q+   LKM+KQE+K+E 
Sbjct: 171 LNLADADPFSSMVFFGKLVFELCFKIGLLILLMSILDFFYQKWQYEQDLKMTKQEVKEEF 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  G+P+I+ R +S+ R   R +MME   +A ++ITNPTHYA+A++Y   ++ APV+VA
Sbjct: 231 KQMEGDPLIRQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDINKDRAPVVVA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIY 350
           KGQ L+A+K+++IA E+ + I E+P LAR+L+ QV I   IP   YKA+A+   ++YK+ 
Sbjct: 291 KGQRLMAQKIKEIAKENGVFIHEDPPLARTLYSQVEIGDEIPENLYKAIAEILAIVYKMK 350

Query: 351 HKKI 354
           +K++
Sbjct: 351 NKRV 354


>gi|83858790|ref|ZP_00952312.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853613|gb|EAP91465.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
          Length = 358

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 187/353 (52%), Gaps = 15/353 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +    KTE P+ +K+  A  EG+ P S+E S + ++ A L  +L F +PG+ +  +
Sbjct: 1   MAEGEDKSEKTEEPTDRKLRQAREEGDVPKSQEVSGWFTLTAGL-AMLAFLAPGMVTNLA 59

Query: 61  D-LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI------PGLLLFMMFGIGSYLIQ 113
           + L V LA   +  ++    +    T  + +A RLV+        LL+  +FG    L+Q
Sbjct: 60  EMLLVFLAQPHELAVDPTGAV----TLAAATAMRLVLVVGLAFATLLVAAIFG---NLVQ 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +     + P   ++   +G+ R++     +NF K   K+ +VG  I   L      +
Sbjct: 113 TGVMFTPKKIAPKLDKLDPIKGLTRMFGPEGWMNFFKGVGKMTIVGLAIAAVLWPRRNEL 172

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                  P  IL   +    +++I  L+    + VLD  +   Q+  + KMS++EI+DE+
Sbjct: 173 AVLPGVAPIGILQEVYSAAIQLMIAALIAYTAIAVLDFLFQRKQYIDRHKMSRKEIRDEM 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G+P+I+ + + I + R + +MM     A ++ITNPTHYA+AL Y Q    AP+ VA
Sbjct: 233 KDTEGDPMIRAKLRQIRQERAQRRMMARVPDAAVVITNPTHYAVALEYEQGRTPAPICVA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           KG + +A ++R +A EH+IPI E+P LAR LF  V +   IPP  + AVA++I
Sbjct: 293 KGTDEVALRIRALAEEHDIPIVEDPPLARGLFASVELEEVIPPEHFTAVAKII 345


>gi|313672722|ref|YP_004050833.1| flagellar biosynthetic protein flhb [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939478|gb|ADR18670.1| flagellar biosynthetic protein FlhB [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 353

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 199/353 (56%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M +ND+  ++TE  + ++ + A+ EGN P SRE S   + L  ++ L F+    +    +
Sbjct: 1   MPDNDS--DRTEEATPRRKQKAIEEGNVPRSRELSTGITFLIAVLILYFYIPSMVEEFKT 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D     +    R  ++ +++  LL  +  S +++ +P L + +   I + ++Q   V + 
Sbjct: 59  DFIRYFSMYNYRINKESAYL--LLIEVIKSMAKVTLPLLFVLVFVAILANIVQFGVVFSS 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++  + R++   G  R++S  +L   +KS +KI L+G    + +     T+L    A+
Sbjct: 117 KVLELKWDRLNPISGFGRLFSKKSLFELLKSILKISLIGFAAFLIIKSKIPTILTLADAD 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S ++     + +V   + + I  + ++D  +   Q+Y  LKM+KQE+K+E KQ  G+P
Sbjct: 177 AVSSIHFLGKLIYEVSFKLAIIIMVIALIDFLYQRWQYYEDLKMTKQEVKEEFKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +S+ R   R +MME   +A ++ITNPTHYA+A++Y   ++ AP +VAKGQ LIA
Sbjct: 237 LIKQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDMAKDRAPKVVAKGQRLIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA ++N+ I E+P LAR+L+  V I   IP   YKAVA+++  +Y  K
Sbjct: 297 LKIREIASKNNVLIHEDPPLARTLYSSVEIGEEIPENLYKAVAEILAMVYRLK 349


>gi|117923329|ref|YP_863946.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1]
 gi|117607085|gb|ABK42540.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1]
          Length = 355

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 193/355 (54%), Gaps = 6/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  D+KTE P+SK++ D+ N+G    S+E      +LA L   L   +    ++  
Sbjct: 1   MADEDK-DSKTEEPTSKRLSDSRNKGQVVSSKEVPTALLMLAALAVFLVQGNELWQALQR 59

Query: 61  DLHVLLASATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            +H  L+       +DI+   +  +   +  +    + P   LF++  I S LIQ   ++
Sbjct: 60  KMHFFLSGQIS---DDITPTGVSLIFNEIIRAVVMDLAPFFALFLVVAIISGLIQHGWLI 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               + P F +V+  +G+KR++S+ +LV   KS VKI ++   + +++  N   +L    
Sbjct: 117 TFEPLMPKFSKVNPLQGLKRLFSVRSLVEAFKSIVKIFVISFAVYLAMRNNIDQILGLAD 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                     F    ++L  + L    + VLD  +    +   L+MSKQEIKDE+KQ  G
Sbjct: 177 TTITEFTTLMFKDSLEILWRVTLAFLLIAVLDFIYQKFDYIKGLRMSKQEIKDEMKQMEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K R + I R   + +MM+   +A +IITNPTHYA AL+Y   +  AP LVAKG+ L
Sbjct: 237 DPLLKGRIRQIQRELAQSRMMQEVPKADVIITNPTHYACALQYTPGQMSAPKLVAKGKGL 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA ++R++A E+NIP  E P LAR+L++ V +   IPP  +KAVA+++  ++  K
Sbjct: 297 IAARIRELADENNIPRVENPPLARTLYRDVELEQFIPPELFKAVAEVLAYVFSLK 351


>gi|85716547|ref|ZP_01047517.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
 gi|85696548|gb|EAQ34436.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
          Length = 359

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 191/347 (55%), Gaps = 4/347 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DAL  G+   S+E + + +I    + L  F          
Sbjct: 1   MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNAWFAIAGATLVLSTFAGSIGDGFRM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  L+A++ Q +  D   ++ L   +    A+ L +P LLL  M  +   ++Q   V +
Sbjct: 61  PLRNLIANSWQIR-TDGPGLLALAEQIGYCLAAALGVP-LLLLTMAAVAGNVVQHRFVWS 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP   ++S+  G KRI+    + NF K   K++ +G ++T  L      +   +  
Sbjct: 119 GETLKPKLSKISVVSGAKRIFGKQAVANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRL 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P+++L        ++L  +++ +A + + D  + Y QW+ + KMS +E+K+E KQS G+
Sbjct: 179 DPNALLGITKSLTLQLLGAVMVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK R + +   R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + I
Sbjct: 239 PHIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSY-ERGMSAPVCVAKGVDNI 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A K+R+IA EH+IP+ E   LAR+L+  V I+  IP   Y AVA++I
Sbjct: 298 ALKIREIAREHDIPVVENVPLARALYAAVEIDDEIPVEHYHAVAEII 344


>gi|75675330|ref|YP_317751.1| flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi
           Nb-255]
 gi|74420200|gb|ABA04399.1| Flagellar biosynthetic protein FlhB [Nitrobacter winogradskyi
           Nb-255]
          Length = 359

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/348 (33%), Positives = 195/348 (56%), Gaps = 6/348 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DAL  G+   S+E + +  ++A    +L  FS  I S   
Sbjct: 1   MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWF-VIAGATLVLSTFSGSIGSGFE 59

Query: 61  -DLHVLLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             L  L+A++ Q +  D   ++ L   +    A+ L +P LLL MM  +   +IQ   V 
Sbjct: 60  LPLRNLIANSWQIR-TDGPGLLALAEQIGYRLAAALGVP-LLLLMMAAVAGNVIQHRFVW 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   +KP   ++S+  G KRI+      NF K   K++ +G ++T  L      +   + 
Sbjct: 118 SGETLKPKLSKISMVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDAMVR 177

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +P+++L        ++L  +++ +A + + D  + Y QW+ + KMS +E+K+E KQS G
Sbjct: 178 LDPNALLGITKSLTLQLLGAVIVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK R + +   R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + 
Sbjct: 238 DPHIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSY-ERGMSAPVCVAKGVDN 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           IA K+R+IA EH+IP+ E   LAR+L+  V I+  +P   Y AVA++I
Sbjct: 297 IALKIREIAREHDIPVVENVPLARALYAAVEIDDEVPVEHYHAVAEII 344


>gi|227328329|ref|ZP_03832353.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 383

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 188/353 (53%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTEAP+ +K E A  EG  P SRE    +S+L  +  L   +  G  ++   L 
Sbjct: 3   EDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWMGG-DAMAGRLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +++ +       I     +L H+      A+  +IP +L  ++  + + L+    + + 
Sbjct: 59  RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAASALIPIMLGAVLVALSAPLLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S  +L    K+ +K ++VG I T+ L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + +  A         +I++ +  +   D+ W       KL+MSKQEI+DE KQS G+P
Sbjct: 179 PIAAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY + + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351


>gi|288962718|ref|YP_003453012.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288914984|dbj|BAI76468.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 359

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 204/358 (56%), Gaps = 24/358 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D  + KTE P+ K++ +A  +G+ P +R+  L S+++A  + +L   +PG+ S  S
Sbjct: 1   MAEQD-DEQKTEEPTEKRLREAAEKGDVPRARDVGLLSAMVAAWMIVLMA-APGVASNLS 58

Query: 61  DLHV-LLASATQRKLE----DISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            L + L+ +    +++    D+ H + +L+  ++++    ++P L + ++  + S L Q 
Sbjct: 59  ALLLPLIENPDDIRIDGGAIDVIHSLAWLIGGVAVA----LLPVLGILLVGAVVSALGQG 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT------ISLTE 168
             V+  + ++P +  +S   G KR+     LV F KS VK+ ++           I+ TE
Sbjct: 115 PFVVASDRIRPKWSHLSPAAGWKRMAGRPALVEFAKSLVKLAIISAAAWRALAPYIAWTE 174

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           +   M   ++  P+ +L      +   +++  + +A + VL   W+  +W  +L+MS QE
Sbjct: 175 DTVGM--DVAGLPN-LLRDVTLRLLLAVLLATVLMAAVDVL---WNRLEWRRRLRMSPQE 228

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           IKDE KQ  G+P  K R + I RSR + +MM    RAT++ITNPTH+A+AL Y +    A
Sbjct: 229 IKDEFKQIEGDPNAKARLRDIRRSRSKKRMMANVPRATVVITNPTHFAVALEYERGRTAA 288

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           P+ +AKG +LIA ++R +A EH IPI E P LAR+L  Q  +++AIP   Y+AVA++I
Sbjct: 289 PICLAKGADLIALRIRALAQEHGIPIVENPPLARALHAQAEVDAAIPLQHYQAVAEVI 346


>gi|39936944|ref|NP_949220.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           CGA009]
 gi|192292772|ref|YP_001993377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           TIE-1]
 gi|39650801|emb|CAE29324.1| putative flagellar biosynthetic protein flhB [Rhodopseudomonas
           palustris CGA009]
 gi|192286521|gb|ACF02902.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           TIE-1]
          Length = 357

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 194/348 (55%), Gaps = 8/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   D KTE P+ K+++DAL  G+   S+E + +  I    + L  F       + +
Sbjct: 1   MSEDS--DEKTEEPTQKRLDDALKRGDVVKSQEVNTWFLIAGATLVLSSFHESIGTGILA 58

Query: 61  DLHVLLASATQRKLEDISHIVFL--LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            +  L+  +   +++    I     L++ +L+A  + IP LL+ ++  I S +IQ   V 
Sbjct: 59  PMRNLIEKSWMLRVDGDGLIALAKSLSYATLAA--IGIP-LLMLVIVAIASNMIQHRLVF 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P F ++S  EG KR++    + NF+K   KI+ +G ++   L   +  +   + 
Sbjct: 116 SAEALTPKFSKLSPLEGAKRLFGKQAMANFLKGLFKIVALGIVMVAVLYPEHDRLDALLK 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  ++L        K+L  ++  +A + V D  + Y QW+ K KMS QEIK+E KQS G
Sbjct: 176 MDVSALLGVTVALTLKLLGAVVAMLAFVAVGDYFFQYRQWHEKQKMSLQEIKEEFKQSEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK R + +   R++ +MM     A+++ITNPTH+++AL+Y +    AP+ VAKG + 
Sbjct: 236 DPHIKGRLRQLRYQRMKKRMMAEVPNASVVITNPTHFSVALKY-ERGMSAPICVAKGVDA 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A K+R++A EH++PI E   LAR+L+  V I+  IP   Y+AVA++I
Sbjct: 295 VAFKIREVAKEHDVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVI 342


>gi|152997434|ref|YP_001342269.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1]
 gi|150838358|gb|ABR72334.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1]
          Length = 378

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 194/360 (53%), Gaps = 19/360 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE+ SSKK++DA N+GN P S++    SS L  ++     +  G   V  
Sbjct: 1   MAENEDGSEKTESASSKKLQDARNKGNLPRSKD---LSSALLLIVAAATIYGTGTLLV-R 56

Query: 61  DLHVLLA---SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           DL VL        +  + D+S +VF   HL  S   ++   +LL  +  +   ++  I +
Sbjct: 57  DLAVLFDFNFLVERADVFDLSRMVF---HLYESVVAMMDSMVLLMAVLAVAG-IVGSIAL 112

Query: 118 LNLNH----VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF-- 171
             LN     + P   ++S   G+KR++S+ +LV   KS  K+ LVG I+++ L  NYF  
Sbjct: 113 GGLNFSWEPLTPKLSKMSPIAGLKRMFSVQSLVELFKSIAKVTLVG-IVSV-LVVNYFLP 170

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             L     +    + H    V    + + L +A +  +D+ +       KLKM+KQE+KD
Sbjct: 171 ETLGLTFQSIELAIAHGIDIVIWSFVFVTLALALIAAIDVPFQVWSHKEKLKMTKQEVKD 230

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E KQ  G+P+++ R + + R    ++MM     A +IITNPTH+++AL+Y Q    APVL
Sbjct: 231 EYKQQEGDPLVRGRIRQMQRQAAMNRMMSDVPSADVIITNPTHFSVALKYDQAGGAAPVL 290

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG + IA K+R++   ++IP+ + P+LAR+++    I   IP   +K VAQL+  +Y 
Sbjct: 291 LAKGGDFIALKIREVGNHYDIPVIQSPALARAIYHHTEIGDEIPQGLFKVVAQLLAYVYQ 350


>gi|148256775|ref|YP_001241360.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. BTAi1]
 gi|146408948|gb|ABQ37454.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. BTAi1]
          Length = 359

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 192/346 (55%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  ++KTE P+ K+++ AL  G+   S+E + +  I A  + +  F      +V  
Sbjct: 1   MADEDDSEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMSTFSGSIGTAVLV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L+A++      D + ++ L   LS +    +   +L+ M+  I   ++Q   V + 
Sbjct: 61  PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+F ++S   G KR++      NF K   K++L+GT++ + L      +   +  +
Sbjct: 120 EPLKPNFGKISPLAGAKRLFGKQAAANFAKGIFKLVLLGTVMVMILWPERLRLESLLHMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L       + ++  ++  +A + + D  + Y QWY + KMS QE+K+E KQS G+P
Sbjct: 180 VSELLGVTISLTKHLMGSVVALLALVAIGDYLFQYRQWYERQKMSVQEMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I + R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALAY-ERGMSAPVCVAKGVDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R+IA  H+IPI E   LAR+L+  V I++ IP   Y AVA++I
Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDAEIPVEHYHAVAEII 344


>gi|197104398|ref|YP_002129775.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum
           HLK1]
 gi|196477818|gb|ACG77346.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum
           HLK1]
          Length = 359

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 198/347 (57%), Gaps = 4/347 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE +   +KTE  + +K+E A ++G+   + + S F+++ A    L          + S
Sbjct: 1   MSETEQ-SSKTEEATPRKLEKARSQGDVAKTMDLSSFATLAAGAAALAVTGGWLARKMAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L   +       L      V +  H+ ++A+  +   L    + G+ ++L+Q   + + 
Sbjct: 60  ELLPFVERPHAIDLHGAGG-VDIARHVIMAAAPALAIVLGATAICGVAAHLMQTGLIFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA- 179
             +KP  K++S   G+K+I+ ++NLVNF+KS VK+I+ G +    L + Y   L  ++A 
Sbjct: 119 EKMKPDLKKLSPIAGLKKIFGLDNLVNFLKSLVKVIVTGAL-GWWLLQPYIPQLAELAAL 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P +++  A   +++++  +     ++   D  W   ++  ++KM+++E+KD+ KQ  G+
Sbjct: 178 DPLAMMPFAVDILKRLVFAVAALTLSIAGADWIWQKRRYLHRMKMTREEVKDDFKQVEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K RQK I  +R R +MM A   AT+++ NPTHYA+AL+Y  +E  AP+ VAKG + +
Sbjct: 238 PHVKARQKQIRFTRARQRMMAAVPDATVVVMNPTHYAVALKYDASETPAPMCVAKGLDSL 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A K+R +A E  +P+ E+P LAR+L+  V I+  IPP  Y+AVA++I
Sbjct: 298 ALKIRAVAEEAGVPVIEDPPLARALYAAVEIDDMIPPAHYEAVAKII 344


>gi|316932838|ref|YP_004107820.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           DX-1]
 gi|315600552|gb|ADU43087.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           DX-1]
          Length = 357

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 186/343 (54%), Gaps = 2/343 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D KTE P+ KK++DAL  G+   S+E + +  I    + L  F       +   L 
Sbjct: 2   SDDSDEKTEEPTQKKLDDALKRGDVAKSQEVNTWFLIAGGTLVLSSFHGSIGAGILGPLR 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L+  +   +++    I    + +  + + + +P L L M+  +   LIQ   V +   +
Sbjct: 62  SLIEKSWMLRVDGDGLIALTKSLMYATVAAIGVP-LFLVMITAVIGNLIQHRLVFSAEGL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P   ++S  +G KR++    L NF+K   K++ +G ++   L   +  +   ++ +  +
Sbjct: 121 TPKLSKLSPLQGAKRVFGKQALANFLKGLFKVVALGIVMVAVLYPEHDRLDALLTMDVAA 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +L        K+L  ++  +A + V D  + Y QW+ K KMS QEIKDE KQS G+P IK
Sbjct: 181 LLGVTVTLTLKLLGAVVAMLAFVAVADYFFQYRQWHEKQKMSLQEIKDEYKQSEGDPHIK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + +   R++ +MM     A+++ITNPTH+++AL+Y +    AP+ VAKG + +A K+
Sbjct: 241 GRLRQLRYQRMKKRMMAEVPGASVVITNPTHFSVALKY-ERGMPAPICVAKGVDAVAFKI 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           R++A E+N+PI E   LAR+L+  V I+  IP   Y+AVA++I
Sbjct: 300 REVAKENNVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVI 342


>gi|296101781|ref|YP_003611927.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056240|gb|ADF60978.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 382

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 201/367 (54%), Gaps = 31/367 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILA-CLIY---------LLF 49
           M+E +  D+KTEAP+  ++E A  EG  P SRE  SL   I+  C+I+         L  
Sbjct: 1   MAEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILIVGVCIIWWGGESLARKLAG 58

Query: 50  FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
             S G+   +S+ +D +++L+   Q     +  ++ L+T + L A  L+ P +L  ++F 
Sbjct: 59  MLSAGLRFDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVA--LISPVMLGGLVFS 116

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
             S             ++P F +++   GI +++S       +K+ +K  L+G+     L
Sbjct: 117 TKS-------------LQPKFSKLNPLSGIAKMFSAQTGAELLKAILKAALMGSAAGFYL 163

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             N+  M+  IS +P + + +A   V    ++++L I  +   D+ +  +  + KL+MS+
Sbjct: 164 WHNWPEMMRLISESPLTAMSNALNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSR 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQ  G+P +K R + + R+  R +MME   +A +I+TNPTHY++AL+Y + + 
Sbjct: 224 QDIRDEYKQMEGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALQYDENKM 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  LIA ++R+I  E+ +PI E P LAR+L++   I   IP   Y AVA+++
Sbjct: 284 SAPKVVAKGAGLIALRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343

Query: 347 YKIYHKK 353
             ++  K
Sbjct: 344 AWVWQLK 350


>gi|227112512|ref|ZP_03826168.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 383

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTEAP+ +K E A  EG  P SRE    +S+L  +  L   +  G  ++   L 
Sbjct: 3   EDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWMGG-EAMAGRLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +++ +       I     +L H+      A   +IP LL  ++  + + L+    + + 
Sbjct: 59  RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAVSALIPILLGAVLVALSAPLLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S  +L    K+ +K ++VG I T  L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTFFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + +  A         +I++ +  +   D+ W       KL+MSKQEI+DE KQ+ G+P
Sbjct: 179 PITAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQNEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY + + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351


>gi|223038713|ref|ZP_03609006.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267]
 gi|222880115|gb|EEF15203.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267]
          Length = 358

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 198/356 (55%), Gaps = 30/356 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYSVTSDLHVL 65
            KTE P+SKKIEDA  +GN P S++ + F +I   +   + LL F     + + +    L
Sbjct: 7   EKTEEPTSKKIEDARKDGNVPKSQDLAGFVTIAVAIFVVVALLGFIKDQFFMLYNYYQDL 66

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +     RKL      +F +T +++  + L+I P  +   + G+ + L+Q   +     ++
Sbjct: 67  IGQEFTRKL------LFSVTIITIFRTLLIILPIAVCIAIAGVFANLMQFGFIFTTKPLE 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P+  +++  +G+K ++S+  L++ +K  +K+  V T+        +   L FI   PH++
Sbjct: 121 PNLNKINPLKGLKNLFSLKKLIDGIKMILKVTAVFTV-------GFLMFLSFIKELPHTL 173

Query: 185 LY----------HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            +               +  V+++++  I  L VL + +   Q++  L+MSKQEIKDE K
Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRF---QYFRDLRMSKQEIKDEYK 230

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           Q  G+P +K R + +     R++MM+   +A +IITNPTHYA+ALRY +T+  APV++AK
Sbjct: 231 QMEGDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAK 290

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           G + +A ++++I  ++N+ I E P LAR L+K   +N  IP   ++AVA+++  +Y
Sbjct: 291 GVDFLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346


>gi|225569959|ref|ZP_03778984.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM
           15053]
 gi|225161429|gb|EEG74048.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM
           15053]
          Length = 353

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 196/353 (55%), Gaps = 16/353 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLH- 63
           A D+KTE  + KK  D   EGN  I + + + + +   L  Y+L    PGIY  + +   
Sbjct: 2   AADSKTEKATPKKRRDERKEGN--IFQSSDVVNVVFVFLSFYILKLIFPGIYETSGNFMK 59

Query: 64  ---VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               L  S T    + +    + +  LS +A+R V+P   + M+ GI  + IQ   +   
Sbjct: 60  RFISLAGSITDLSGQSVGK--YGMEFLS-AAARTVLPFACICMVTGIVMHGIQTRFLFTS 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            + +P   R+S  +GIKRI+++ N +  +K+ +K+I++  II   L ++    ++ I   
Sbjct: 117 KNFRPKLNRISPLQGIKRIFALKNAIELVKNLLKVIVLVAIIYTLLKQD---AVNVIRTM 173

Query: 181 PHSILYHAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             SI   A +T   ++ MIL   +  A +  LD  + +  +  K+KMSKQE+K+E KQ+ 
Sbjct: 174 DMSISASAAYTFDMIISMILRVSMVFAVIAFLDYLFQWWDYERKIKMSKQEVKEEFKQTE 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK R + I + R R +MM+A   A +II NPTH+A+AL Y   +N+APV+VAKG +
Sbjct: 234 GNPEIKGRIRDIQKQRARSRMMQAVPNADVIIRNPTHFAVALSYDTEKNNAPVVVAKGVD 293

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +A ++ +   E+++ + E+  LARSL+ +  +N  IP  +Y AVA+++  +Y
Sbjct: 294 ELALRIVRTGEENHVAVIEDRPLARSLYAETELNREIPSEYYGAVAEILVYVY 346


>gi|154253017|ref|YP_001413841.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans
           DS-1]
 gi|154156967|gb|ABS64184.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans
           DS-1]
          Length = 359

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 184/346 (53%), Gaps = 3/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    KTE P+ +K+E+A  +G+   S+E S +  ++     +         S+  
Sbjct: 1   MADQD-DSEKTEEPTHRKLEEAHKKGDLVKSQEVSTWFVMIGGATAIALMAPSTASSLMG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L V LA      + D  H+  +  ++  SA   +I  L + +   +  +LIQ  PV   
Sbjct: 60  SLTVFLAQPETIPM-DAEHLRRIWLNVGSSAFMSMIGPLAVLVGAALVGHLIQHAPVFTA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++KP   ++S +EG++R++   +L+N  K  +K+ +VG++  + +      +   ++  
Sbjct: 119 ENMKPKLSKISPKEGLQRLFGPKSLMNLAKGILKLTIVGSVSVLIIWPERDRLALMMTWE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L        K+   ++  +  +  LD  +   QW  K +MS QE+KDE KQ  G+P
Sbjct: 179 IAQLLPLVQMLALKMFAGVIAVMTVVAALDYLFERMQWMKKQRMSIQEVKDEYKQMEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + I   R R +MM A   AT+IITNPTHYA+AL+Y Q    APV+VAKG + +A
Sbjct: 239 TVKAKLRQIRAERGRKRMMAAVPTATVIITNPTHYAVALKYEQGMG-APVVVAKGVDAVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R++  EH +PI E P LAR+L   V I+  I P  YKAVA++I
Sbjct: 298 FRIREVGQEHEVPIIENPPLARALHATVDIDQEIQPEHYKAVAEVI 343


>gi|288958052|ref|YP_003448393.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288910360|dbj|BAI71849.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 358

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 195/353 (55%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+    +KTE P+ KK+++A  +G   ++REA+ +  + A L+ L+      +  +  
Sbjct: 1   MSEDADESSKTEDPTGKKLDEAHRQGQFAMTREAANWLMVAAMLVVLVSVLPGTMKGLVF 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L+    +  Q   +       L   +      L +P +LLF++ G+ + + Q    ++ 
Sbjct: 61  RLNYYFENLDQFTFDRAGVGALLFRVMRDVMWALWLP-ILLFVVAGVMATIGQTGFHVSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+  ++  N  V  +KS VK+ +VG +  ++L   +  +  +I  +
Sbjct: 120 QLIEPKFSKLNPLPGLMNMFKANQAVELLKSIVKLAVVGGVAYMALRPMFGGIETYIGID 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L        ++LI +L+ +  +   D  W   Q+  ++KM+KQE+KDE KQ  G+P
Sbjct: 180 LITMLSQMDGLAHRLLIWVLVVLTFIAAGDFLWQKKQFDKQMKMTKQEVKDEHKQQEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R + I   R R +MM A   A +++TNPTH+A+AL+Y  ++  AP+++AKG + +A
Sbjct: 240 VVKGRIRQIRFERARKRMMAAVPDADVVVTNPTHFAVALKYDPSQMGAPLVLAKGVDQVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  +N+P+ E P LAR+L+    I+  +P   Y+AVA++I  ++  K
Sbjct: 300 FKIREIAESNNVPVIENPPLARALYAACDIDEEVPSEHYRAVAEVITYVFKLK 352


>gi|329849682|ref|ZP_08264528.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum
           C19]
 gi|328841593|gb|EGF91163.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum
           C19]
          Length = 358

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 15/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASL---FSSILACLIYLLFFFSPGIYS 57
           M+E    ++KTE  S+KK+  A  +G+  +++ A L    S I AC +  L+   P + S
Sbjct: 1   MAEEPDSEDKTEEASAKKLSQAREKGD--VAKSADLPQALSLIGACAVIALY--GPSLSS 56

Query: 58  -VTSDLHVLLASATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            +  DL   LA   Q    LE    +  ++  +  +   +VI  + + ++ GIG +++Q 
Sbjct: 57  DLVDDLIPFLAHPQQLLGSLEGDGGVT-IMREMVFAFLPIVIIVMGVTLLLGIGGHVMQT 115

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             +     +KPS  +++   G KR++  + L+ F K+ VK+I+ G I+   L    + ++
Sbjct: 116 GLMFTTEKLKPSLTKLNPMSGFKRLFGFDALIQFAKTVVKLIITGAIVWQVLKGKLYEIM 175

Query: 175 DFISANPHSILYHAF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
               A+P  IL +A   F    + + I LFI      D  W   ++  ++KMSKQE K+E
Sbjct: 176 ALAKASPLLILPYAMDVFVALAIAVCIFLFIEGAA--DYMWQRFRFMQRMKMSKQEQKEE 233

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            KQ  G+P IK + + I   + R +MM     AT++ITNPTHYA+AL++   +  AP+ V
Sbjct: 234 YKQMEGDPHIKAKLRQIRMEKSRRRMMSNVKDATVVITNPTHYAVALQFEMGQMQAPLCV 293

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+ A +HN+PI E+  LAR+L+  + ++  IP   + AVAQ+I  +  K
Sbjct: 294 AKGVDTLALKIREEAGKHNVPIVEDVPLARALYAAIDVDETIPEEHFAAVAQVISFVLAK 353

Query: 353 K 353
           K
Sbjct: 354 K 354


>gi|291613025|ref|YP_003523182.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus
           ES-1]
 gi|291583137|gb|ADE10795.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus
           ES-1]
          Length = 381

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 200/365 (54%), Gaps = 29/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+PS ++++ A  EG    SRE S F+ ++A           GI+ +  
Sbjct: 1   MAEQDSDLEKTESPSQRRLDQAREEGQVARSRELSTFAVLMAG--------GAGIWLMGG 52

Query: 61  DLHVLLASATQRKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L   L S  +  L   + + F        L  LS+S   + +P L L +     S L+ 
Sbjct: 53  MLSQQLISLIREGLTLDTGLAFHSELLVPRLHDLSMSTLLVFLPLLGLLLAVAAFSPLLL 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +  L  ++P+F +++   GI R++S N+L+   K+  K ++VG I  + +  N   +
Sbjct: 113 NGWLFTLKPLQPNFGKLNPITGIGRMFSTNSLMELAKAIAKAVVVGGIGALVIWHNKNAV 172

Query: 174 LDFIS-----ANPH--SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
           L  +S     A PH  S+++ +F  V   L++I+        +D+ +   +   KLKM+K
Sbjct: 173 LLLVSEPIASAIPHLGSLVWGSFAAVMGGLLLIV-------AVDVPFQLWEHNKKLKMTK 225

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           +E++ E K++ G+P +K R +S+ R   R +MM    +A +++TNPTHY++AL+Y  ++ 
Sbjct: 226 EEVRQESKETEGDPQVKARVRSMQREMARRRMMAEIPKADVVVTNPTHYSVALKYSDSKM 285

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            APV+VAKG +L+A K+++IA EHN+PI E P LAR+L K   +  AIP   Y AVA+++
Sbjct: 286 RAPVVVAKGSHLMAAKIKEIAKEHNVPILEAPPLARALHKHCELGEAIPEALYTAVAEVL 345

Query: 347 YKIYH 351
             +Y 
Sbjct: 346 AYVYQ 350


>gi|254691439|ref|ZP_05154693.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str.
           870]
          Length = 210

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/207 (41%), Positives = 137/207 (66%)

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
            F+KS  K++    I+ +   +      D ++ +P ++       V ++L+  +L IA +
Sbjct: 1   EFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATDPGALPEFLRKNVVRLLVANVLAIAAI 60

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
              D+ WS   W  +L+M++QE+KDE+KQS G+P++K+R +S+ R R R +M+ A   AT
Sbjct: 61  AGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGRDRARRRMINAVPTAT 120

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA K+R+IA  H+IP+FE+  LAR+L+K
Sbjct: 121 LIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFEDVQLARALYK 180

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
           QV ++  I P FYKAVA+LI  I  ++
Sbjct: 181 QVNVDQMIAPEFYKAVAELIRIINTRR 207


>gi|146341890|ref|YP_001206938.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. ORS278]
 gi|146194696|emb|CAL78721.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. ORS278]
          Length = 359

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 188/346 (54%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE P+ K+++ AL  G+   S+E + +  I A  + +  F      +V  
Sbjct: 1   MAEEGDTEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMTTFSGSIGTAVLV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L+A++      D + ++ L   LS +    +   +L+ M+  I   ++Q   V + 
Sbjct: 61  PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KPS  ++S   G KR++      NF K   K++L+GT++ + L      +   +  +
Sbjct: 120 EPLKPSLSKISPLSGAKRLFGKQAAANFAKGLFKLVLLGTVMVMILWPERLRLEALLHMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L         ++  ++  +A + + D  + Y QWY + KMS QE+K+E KQS G+P
Sbjct: 180 VAELLGVTMSLTTHLMGSVVALLALVAIGDYLFQYRQWYERQKMSLQEMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I + R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALSY-ERGMQAPVCVAKGVDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R+IA  H+IPI E   LAR+L+  V I+  IP   Y AVA++I
Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDEEIPVEHYHAVAEII 344


>gi|260598364|ref|YP_003210935.1| flagellar biosynthetic protein flhB [Cronobacter turicensis z3032]
 gi|260217541|emb|CBA31747.1| Flagellar biosynthetic protein flhB [Cronobacter turicensis z3032]
          Length = 392

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 189/360 (52%), Gaps = 21/360 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-------IY 56
           +D  D+KTEAP+  + E A  EG  P SRE    +S+L  L+ +   +  G         
Sbjct: 12  SDDSDDKTEAPTPHRREKAREEGQIPRSRE---LTSMLMLLVGVAVIWMGGSLLARQLAA 68

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQ 113
            ++  LH   +     KL  +  I FL+   +L A   +I G+++  +F    +G  L  
Sbjct: 69  MLSHGLHFDHSIINDPKLV-VGQISFLIKQ-ALVALVPLIMGVVIVALFAPMLLGGLL-- 124

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
                N   V    ++++   GIKRI+S  +L   +K+ +K +LVG +    L  N+  M
Sbjct: 125 ----FNTKAVAFKPEKLNPLPGIKRIFSSQSLAELLKAVLKSVLVGIVTGCFLWYNWPDM 180

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           +  IS +P S + +A   V    I+I++ +  +   D+ W       KL+MS+Q+I+DE 
Sbjct: 181 MRLISESPISAMRNAMNLVALCCILIVMGLVPMVGFDVFWQIVSHTKKLRMSRQDIRDEF 240

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K   G+P +K R +   R   R +MM    +A +I+TNPTHY++AL+Y + +  AP +VA
Sbjct: 241 KNQEGDPHVKGRIRQQQREAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVA 300

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG  L+A ++R+I  EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 301 KGAGLVALRIREIGNEHRIPMLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 360


>gi|302384124|ref|YP_003819947.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194752|gb|ADL02324.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 362

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 194/361 (53%), Gaps = 16/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF--------FS 52
           M+E+  P++KTE  S +K+E+A  +G+   S + +   S+L C+  +L           +
Sbjct: 1   MAEDADPESKTEEASPQKLEEARKKGDVAKSADVAPALSLL-CVTGVLIMGGGYFATNMA 59

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            G     +  H +L         +I   V  +    L A       +L  ++ G+G  + 
Sbjct: 60  QGFLPFIAAPHAMLGGLEAGGGVEIGARVLWVVAPFLGAV------MLAAILGGVGGNVA 113

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q   V++   +KP + +VS   G KRI+  + L+ F ++ +K++ VG I  + L  +   
Sbjct: 114 QSGLVISAEKMKPKWSKVSPMAGFKRIFGPDGLMQFAQTLLKLVAVGVICWMVLKPHARQ 173

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
                + +P +IL  A   +  ++   L+F+A     D  W   ++  +++MSK+E+K+E
Sbjct: 174 FETMAAMSPLTILPLARDLMIALMSSALVFLALTAGGDFVWQKMRFAKRMRMSKEELKEE 233

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            KQS G+P IK + K I   R R +MM+   +AT+I+TNPTHY++ALRY +  + APV V
Sbjct: 234 YKQSEGDPHIKAKLKQIRMQRSRQRMMQNVPKATVIVTNPTHYSVALRY-EAGDAAPVCV 292

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A ++R++A EH++PI E   LAR+L+  V I+  IP   ++A A++I  +  K
Sbjct: 293 AKGVDAVAMRIREVAREHDVPIVENVPLARALYAAVDIDETIPREHFEAAARVIGFVMKK 352

Query: 353 K 353
           +
Sbjct: 353 R 353


>gi|86750881|ref|YP_487377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           HaA2]
 gi|86573909|gb|ABD08466.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           HaA2]
          Length = 358

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 185/343 (53%), Gaps = 2/343 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+   K E P+ K+++DAL +G+   S+E + + +I    + L  F       +T  + 
Sbjct: 3   DDSDQEKQEEPTQKRLDDALEKGDVAKSQEVNTWFAIAGATLLLSSFSGSIGSGITGPMR 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L+  +    ++ +  +    + L +  S L +P L L  +  IGS LIQ   V +   +
Sbjct: 63  TLIEKSWMLPVDGVGLLALTKSLLLMLISVLGVP-LGLLALVAIGSNLIQHRLVFSTEGL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP F ++S  EG KR++    L NF+K   K+I +G ++   L      +   +  +  S
Sbjct: 122 KPKFSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMDVVS 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +L        K++  +   +A +   D  + YH W  + KMS QE+KDE KQS G+P IK
Sbjct: 182 LLGVTVSLTLKLMGTVAAVLAFVAAGDFFFQYHTWRERQKMSLQEVKDEYKQSEGDPHIK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + I   R++ +MM A   A+++ITNPTH+++AL+Y +    AP+ VAKG + IA K+
Sbjct: 242 GRIRQIRYQRMKKRMMAAVPGASVVITNPTHFSVALKY-ERGMQAPICVAKGADAIAFKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           R++A  +++PI E   LAR+LF  V ++  IP   Y AVA++I
Sbjct: 301 REVAKANDVPIVENVPLARALFATVEVDEEIPVEHYHAVAEVI 343


>gi|78485088|ref|YP_391013.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena
           XCL-2]
 gi|78363374|gb|ABB41339.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena
           XCL-2]
          Length = 381

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 186/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    K+E PS KK+ +A  +G  P S+E +     L   ++L +FF   +     
Sbjct: 1   MAENEDGTEKSEEPSEKKLREAREKGQVPRSKELTTLLMTLGAAVFL-YFFGAQMMQDFE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +   S  +    D      L+  L + +  +++P LLL ++  + S ++      + 
Sbjct: 60  TLFIKGLSFDRSHAYDFQMATNLVLGLVVHSIYMMVPFLLLMVLIAVVSPMLLGGWNFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIK+++S+N L+   K+F K  LV  +    L  +Y  ++      
Sbjct: 120 QALAPKISKLNPVSGIKKMFSMNALMELFKAFAKFTLVSVVAGFFLWYSYEEIISIGIEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L HA   + +  I + L +  +  +D+ +  HQ  ++LKM+KQE+K+E KQ  G+P
Sbjct: 180 PKQALAHAGQLIVEAFIFVSLSLILIAAIDVPFQIHQHVTQLKMTKQEVKEEHKQQEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM+    A ++ITNPTH+A+AL+Y   E   P+++A G + +A
Sbjct: 240 EVKGRIRQLQREMSQKRMMQKVPEADVVITNPTHFAVALKYAPDEMAEPMVLALGSDFMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R +A EHNIP+ E P LAR+L+    ++  IP   ++AVA ++  +Y 
Sbjct: 300 AQIRTLAKEHNIPLIEAPPLARALYYNAEVDRPIPYELFRAVAAILAYVYQ 350


>gi|255321961|ref|ZP_05363111.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277]
 gi|255301065|gb|EET80332.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277]
          Length = 358

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 197/356 (55%), Gaps = 30/356 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYSVTSDLHVL 65
            KTE P+SKKIEDA  +GN P S++ + F ++   +   + LL F     +++ +    L
Sbjct: 7   EKTEEPTSKKIEDARKDGNVPKSQDLAGFVTLAVAIFVVVALLGFIGDQFFTLYNYYQSL 66

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +     RKL      +F +   ++  + L+I P  +   + G+ + L+Q   +     ++
Sbjct: 67  IGQEFTRKL------LFSVAITTIFRTLLIILPIAVCIAIAGVVANLMQFGFIFTTKPLE 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P+  +++  +G+K ++S+  L++ +K  +K+  V T+        +   L FI   PH++
Sbjct: 121 PNLNKINPIKGLKNLFSLKKLIDGIKMVLKVTAVFTV-------GFLMFLSFIKELPHTL 173

Query: 185 LY----------HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            +               +  V+++++  I  L VL + +   Q++  L+MSKQEIKDE K
Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRF---QYFRDLRMSKQEIKDEYK 230

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           Q  G+P +K R + +     R++MM+   +A +IITNPTHYA+ALRY +T+  APV++AK
Sbjct: 231 QMEGDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAK 290

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           G + +A ++++I  ++N+ I E P LAR L+K   +N  IP   ++AVA+++  +Y
Sbjct: 291 GVDFLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346


>gi|148269163|ref|YP_001243623.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1]
 gi|281411461|ref|YP_003345540.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila
           RKU-10]
 gi|147734707|gb|ABQ46047.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1]
 gi|281372564|gb|ADA66126.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila
           RKU-10]
          Length = 374

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 191/350 (54%), Gaps = 10/350 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   +TE  + +K      EG AP+SRE ++  + L   + L  F   G+  +T D+   
Sbjct: 29  AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPG--LLLFMMFGIGSYLIQRIPVLNLNHV 123
           L+     + ED+     L+  ++     L+I G  ++  M+ G+    +Q   +     +
Sbjct: 89  LSF---EETEDL-----LVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKAL 140

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP   R++  EG KR++S+ +LV  +KS +K+ +VG ++   L   +  M+     N + 
Sbjct: 141 KPDLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVND 200

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
              + +    ++ +   + +  L V D  +   ++   ++M+KQE+KDE+K+  GNP IK
Sbjct: 201 AFANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIK 260

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            RQ+ +    +R +MME   +A ++ITNPTH+A+AL+Y     +APV+VAKG + +A K+
Sbjct: 261 RRQRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKI 320

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +IA E+++P+   PSLAR+L+ +  I   IP  FY+ VA+++  +Y KK
Sbjct: 321 IEIAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370


>gi|222824323|ref|YP_002575897.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100]
 gi|222539544|gb|ACM64645.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100]
          Length = 358

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 205/357 (57%), Gaps = 18/357 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ +D    KTE P+SKKIEDA  EGN P S++AS  + ++  ++ +LF   P +    S
Sbjct: 1   MAADD--QEKTEEPTSKKIEDARKEGNVPKSQDASAVAVLIVAVVVVLFTL-PFMGERIS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L+    S    +L D+  +  ++    +    +V+P  L+ M+ G+   L+Q   +   
Sbjct: 58  GLYRFYQSFIGIEL-DLKILQKIIIKTMIEMFIMVLPITLVIMIAGVLGNLMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F +++   G+K ++S+  ++  +K  +K   VG +  I+    +  +L F+   
Sbjct: 117 KPITPNFNKINPLNGLKNLFSLKKIIEALKITLK---VGVVFGIA----FVFLLQFMQEL 169

Query: 181 PHSILYHAF-----FTVRKVLIMILLFIATLTV--LDIGWSYHQWYSKLKMSKQEIKDEI 233
           P   LY  +        + +++  ++ IA L +  LD+    +Q++  L+MSKQEIKDE 
Sbjct: 170 PRVELYTIYPQLLWLRDKAIILAAVVIIAFLLIGFLDVLIVRYQYFKNLRMSKQEIKDEY 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ+ G+P++K+R + +     R +M++  + A ++ITNPTHYA+ALRY  ++  AP ++A
Sbjct: 230 KQTEGDPLVKSRIRRLQMEAARRRMVQDVASADVVITNPTHYAVALRYDSSQEAAPKVLA 289

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           KG + +A +++ +AYE+N+ I+E P LAR L+K   +N  IPP  +KAVA+++  +Y
Sbjct: 290 KGVDFLALRIKDMAYEYNVMIYENPPLARELYKACEVNDLIPPELFKAVAEVLSFVY 346


>gi|15643671|ref|NP_228717.1| flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8]
 gi|4981445|gb|AAD35990.1|AE001755_13 flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8]
          Length = 374

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 193/350 (55%), Gaps = 10/350 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   +TE  + +K      EG AP+SRE ++  + L   + L  F   G+  +T D+ V 
Sbjct: 29  AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQVF 88

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPG--LLLFMMFGIGSYLIQRIPVLNLNHV 123
           L+     + ED+     L+  +++    L+I G  ++  M+ G+    +Q   +     +
Sbjct: 89  LSF---EETEDL-----LMNAVNIFKDVLLIVGAFVVFSMVAGVMIGALQTRFLFAPKAL 140

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP   R++  EG KR++S+ +LV  +KS +K+ +VG ++   L   +  M+     + + 
Sbjct: 141 KPDLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMSVND 200

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
              + +    ++ +   + +  L V D  +   ++   ++M+KQE+KDE+K+  GNP IK
Sbjct: 201 AFANFWDITSEITLKSGMILLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIK 260

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            RQ+ +    +R +M+E   +A ++ITNPTH+A+AL+Y     +APV+VAKG + +A K+
Sbjct: 261 RRQRQMMYDILRRRMLEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLAFKI 320

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +IA E+++P+   PSLAR+L+ +  I   IP  FY+ VA+++  +Y KK
Sbjct: 321 IEIAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYAKK 370


>gi|170287825|ref|YP_001738063.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2]
 gi|170175328|gb|ACB08380.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2]
          Length = 374

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 191/350 (54%), Gaps = 10/350 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   +TE  + +K      EG AP+SRE ++  + L   + L  F   G+  +T D+   
Sbjct: 29  AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPG--LLLFMMFGIGSYLIQRIPVLNLNHV 123
           L+     + ED+     L+  ++     L+I G  ++  M+ G+    +Q   +     +
Sbjct: 89  LSF---EETEDL-----LVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKAL 140

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP   R++  EG KR++S+ +LV  +KS +K+ +VG ++   L   +  M+     N + 
Sbjct: 141 KPDLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVND 200

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
              + +    ++ +   + +  L V D  +   ++   ++M+KQE+KDE+K+  GNP IK
Sbjct: 201 AFANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEMKDELKEVEGNPEIK 260

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            RQ+ +    +R +MME   +A ++ITNPTH+A+AL+Y     +APV+VAKG + +A K+
Sbjct: 261 RRQRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKI 320

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +IA E+++P+   PSLAR+L+ +  I   IP  FY+ VA+++  +Y KK
Sbjct: 321 IEIAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370


>gi|50120630|ref|YP_049797.1| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611156|emb|CAG74602.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 184/353 (52%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTEAP+ +K E A  EG  P SRE    +S+L  +  L   +  G   +   L 
Sbjct: 3   EDSDLEKTEAPTPQKEEKAREEGQIPRSRE---LTSVLMMVAGLAILWIGGDV-MAGRLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +++ +       I     +L H+      A   ++P +L  ++  + + ++    + + 
Sbjct: 59  RIVSQSLNFDYATIGDDTQMLRHVGSLLRQAVSALVPIMLGAVLVALSAPMLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S   L    K+ +K ++VG I T+ L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSSQALAELFKAILKSVIVGIISTLFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A         +I++ +  +   D+ W       KL+M+KQEI+DE KQS G+P
Sbjct: 179 PIAALGDALELAVMCGFLIIIGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY   + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351


>gi|118475475|ref|YP_891544.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414701|gb|ABK83121.1| flagellar biosynthetic protein FlhB [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 357

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 198/355 (55%), Gaps = 28/355 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTSDLHVL 65
            K E P+ KK+EDA N+GN   S++ S F ++L   A L+ L+ F    + ++      L
Sbjct: 6   EKIEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVNLYLYYQGL 65

Query: 66  LASATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +     R+L       F +T H  L    +++P  +  M+ GI S ++Q   +  +  + 
Sbjct: 66  IGVEITREL------FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTVEPIM 119

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITISLTENYFTMLDFISANPHS 183
           P+F ++   +GI  ++S+  L++     VKIIL V  +  ++    ++  L F+   PH+
Sbjct: 120 PNFSKIDPIKGIANLFSLKKLIDA----VKIILKVSAVFGVA----FYFFLQFVKELPHT 171

Query: 184 ILYHAF----FTVRKVLI----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           I +  F    +   K+LI    M+LLF+  + + D+    +Q++  L+MSKQE+KDE KQ
Sbjct: 172 IFFSMFNQLLWLKEKMLILAGVMLLLFL-IIAIADVFIVRYQYFKGLRMSKQEVKDEFKQ 230

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P +K R + +     R +MM+    A ++ITNPTHYA+ALRY + +  APV++AKG
Sbjct: 231 MEGDPKVKGRIRQLQMQAARKRMMQNIPTADVVITNPTHYAVALRYDKEKEKAPVVLAKG 290

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            + +A ++RKIA E+ I I E P LAR L+K   I+  IP   ++AVA+++  +Y
Sbjct: 291 VDHLALRIRKIATENGIQIVENPPLARELYKLCDIDDQIPGNLFQAVAEVLSFVY 345


>gi|261340264|ref|ZP_05968122.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317353|gb|EFC56291.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
          Length = 382

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 201/367 (54%), Gaps = 31/367 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLF 49
           M+E++  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L  
Sbjct: 1   MAEDN--DDKTEAPTPHRLEKAREEGQVPRSRELTSLLILVVGVCIIWWGGESFARRLAG 58

Query: 50  FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
             S G+   +S+ +D +++L+             + LL   ++ A   +I G++L  +  
Sbjct: 59  MLSAGLRFDHSMVNDPNLILSQ------------IILLVKNAMIALLPLISGVVLVAL-- 104

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           +   ++  + V +   ++P F +++   GI +++S       +K+ +K  L+G+     L
Sbjct: 105 VSPVMLGGL-VFSGKSLQPKFSKLNPLPGIAKMFSAQTGAELVKAILKSALMGSTAGFFL 163

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             ++  M+  IS +P + + +A   V    ++++L I  +   D+ +  +  + KL+MS+
Sbjct: 164 WHHWPEMMRLISESPFNAMNNAMNLVGLCALLVVLSIIPMVGFDVIFQMYSHFKKLRMSR 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQ  G+P +K R + + R+  R +MME   +A +I+TNPTHY++ALRY + + 
Sbjct: 224 QDIRDEYKQMEGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKM 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  LIA ++R+I  E+ +PI E P LAR+L++   I   IP   Y AVA+++
Sbjct: 284 SAPKVVAKGAGLIALRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343

Query: 347 YKIYHKK 353
             ++  K
Sbjct: 344 AWVWQLK 350


>gi|302037621|ref|YP_003797943.1| flagellar biosynthetic protein FlhB [Candidatus Nitrospira
           defluvii]
 gi|300605685|emb|CBK42018.1| Flagellar biosynthetic protein FlhB, export component [Candidatus
           Nitrospira defluvii]
          Length = 360

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 188/352 (53%), Gaps = 7/352 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLH 63
           D+  N+TE  + K+  DA  +G   +SR+A++   +L  L   L++ +PGI   +   L 
Sbjct: 3   DSGQNRTEQATPKRKADARAKGQVALSRDAAMAVGLLGSL-GALYWMTPGILNGLRESLQ 61

Query: 64  VLLA----SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           + L+     +TQR L  + H+  +L  + +    ++ P +    + G+G+ LIQ   +  
Sbjct: 62  LWLSKSMEESTQRTL-SLDHLHLILRQVGVDVFVMLGPVIAGIAVVGVGANLIQTGFLWK 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++  F R+S   G  R++S+ +    +KS++KI  +G +  +++ ++          
Sbjct: 121 RDALQLEFSRISPMAGFSRLFSVRSFSELVKSWLKIFAIGGVGYLTIKQDMVLFSPLTQF 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              ++L    +   K  +M+      +  LD G+   +W   L+MS+ EIK+E + + G+
Sbjct: 181 GMETLLPTVGWATFKAALMMGGAALVIGGLDYGFQRFEWERDLRMSRDEIKEESRAAEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K + +S  R   R +MM A  +A +IITNPTH A+AL+Y      AP++VAKG   +
Sbjct: 241 PGLKAKIRSTQREMSRKRMMAAVPKADVIITNPTHLAVALKYDSKAMGAPIVVAKGAGYV 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A+K+R+I  +H + I E   +AR+LFK V +   +P   Y+AVA+++  +Y 
Sbjct: 301 AEKIREIGRQHGVMIVENKLVARTLFKLVEVGREVPEDLYRAVAEILAFVYR 352


>gi|168238548|ref|ZP_02663606.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734592|ref|YP_002114950.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204931016|ref|ZP_03221842.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710094|gb|ACF89315.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288673|gb|EDY28048.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320060|gb|EDZ05265.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322616914|gb|EFY13822.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618152|gb|EFY15044.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625823|gb|EFY22642.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626275|gb|EFY23085.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632689|gb|EFY29434.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639033|gb|EFY35726.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640473|gb|EFY37126.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646018|gb|EFY42535.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649560|gb|EFY45992.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655468|gb|EFY51776.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660247|gb|EFY56485.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662928|gb|EFY59135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668113|gb|EFY64272.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674127|gb|EFY70221.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675519|gb|EFY71593.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683067|gb|EFY79083.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686761|gb|EFY82739.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195348|gb|EFZ80528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199240|gb|EFZ84335.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204035|gb|EFZ89050.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207496|gb|EFZ92444.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217480|gb|EGA02199.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221971|gb|EGA06361.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224718|gb|EGA08987.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231502|gb|EGA15615.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235944|gb|EGA20023.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240514|gb|EGA24557.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245406|gb|EGA29406.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323250177|gb|EGA34069.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253625|gb|EGA37453.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255054|gb|EGA38842.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260286|gb|EGA43907.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266878|gb|EGA50364.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270708|gb|EGA54149.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 383

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  N+  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHNWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|121613536|ref|YP_001000045.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87250257|gb|EAQ73215.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 368

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 200/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S                
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A      ++ I  ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY      A+   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVTQLAWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|27380920|ref|NP_772449.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA
           110]
 gi|27354086|dbj|BAC51074.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 359

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 191/346 (55%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++ P+++TE P+ K++++AL  G+   S+E + +  I    + +  F       + +
Sbjct: 1   MAEDNDPESQTEDPTQKRLDEALERGDVAKSQEINTWFMIAGGTLVVSTFSGSVGSGLVT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  LLA++   K  D   ++ LL  +  +    +   LL+ ++  +   ++Q   V + 
Sbjct: 61  PMRNLLANSWMIKT-DGRALLALLQQIEFAVLAAIGVPLLMLVLAAVAGNMLQHRLVWSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F ++S   G KRI+      NF+K   K+I++G ++   L      M   +  +
Sbjct: 120 ESLKPKFSKLSPAAGFKRIFGKQAAANFLKGLGKLIVLGVVMGTILWPERHRMEAMVRLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++L         +L  ++  +A + + D  + Y  W+ + KMS QEIK+E KQS G+P
Sbjct: 180 PAAMLGATTSLTIHLLGAVVAALAIIAIGDYFFQYRSWFQRQKMSLQEIKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + + R + +MM A  +A++IITNPTH+++AL Y +    AP+ VAKG + +A
Sbjct: 240 HIKGKIRQLRQQRAKKRMMAAVPKASVIITNPTHFSVALSY-ERGMQAPICVAKGVDNLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R+IA EH+IPI E   LAR+L+  V I+  IP   Y AVA++I
Sbjct: 299 FKIREIAREHDIPIVENVPLARALYATVEIDQEIPTEHYHAVAEVI 344


>gi|254497495|ref|ZP_05110288.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12]
 gi|254353310|gb|EET12052.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12]
          Length = 378

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 193/361 (53%), Gaps = 22/361 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE +  D KTE PS+K++++A  +G    S++   F++ +A     L F + G  +   
Sbjct: 1   MSEQNN-DEKTEQPSAKRLKEARQKGQVARSKD---FNTTVA-----LLFTAVGFLAFGK 51

Query: 61  DLHVLLASATQRKLEDISHIV----------FLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
            L   LA   +   E  ++++          F L  +   A   ++P L+   +  + + 
Sbjct: 52  QLSDQLALMMRHSFEFDTNVIITPVVSLERLFFLAKMGFWA---LVPILIFIFVVSLAAP 108

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           L+    V +   V+P F R+++ +G+KR+ S+ N V  +KSF K +LV ++  I L    
Sbjct: 109 LVMGGWVFSAKVVQPKFSRLNVFQGLKRMVSLKNFVEMIKSFFKFVLVASVAVIVLKSQI 168

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
            T+L        + +      V K  +++   +  + +LD+ +  ++    +KM+KQE++
Sbjct: 169 PTLLSLAHVPIETAIGSGALIVVKCFVLVAASLLLIAMLDVPFQLYEHNKNMKMTKQELR 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE K++ G P +KN  +   +   + +MM     A +++TNPTHYA+A+RY +  N APV
Sbjct: 229 DEYKETEGKPEVKNAIRRAQQEIAKRRMMTEIPTANVVLTNPTHYAVAIRYKEKGNKAPV 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG++L+A ++ K+A EH IPI   P LAR+L+    +N+ IP   Y AVAQ++  ++
Sbjct: 289 VVAKGKDLVAFQINKVAKEHEIPIISVPPLARALYFSTKLNAEIPRGLYIAVAQVLAYVF 348

Query: 351 H 351
            
Sbjct: 349 Q 349


>gi|92116950|ref|YP_576679.1| flagellar biosynthesis protein FlhB [Nitrobacter hamburgensis X14]
 gi|91799844|gb|ABE62219.1| flagellar biosynthetic protein FlhB [Nitrobacter hamburgensis X14]
          Length = 359

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DAL  G+   S+E + +  I    + L  F       V  
Sbjct: 1   MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLATFGGSVGGGVEM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+A++ Q +  D   ++ L   L    +  +   LL+ M+  I   ++Q   V + 
Sbjct: 61  PLRNLIANSWQIRT-DGPGLLALAQQLEYILAAALGLPLLMLMLAAIAGNVVQHRFVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++S+  G KRI+      NF K   K++ +G ++T  L      +   +  +
Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDALVRLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P++IL        ++L  ++  +A + + D  + Y QW+ + KMS +E+K+E KQS G+P
Sbjct: 180 PNAILPTTTTLTLQLLGAVVAMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + +  +R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HIKARIRQLRHARMKKRMMAAVPKASVIITNPTHYSVALSY-ERGMSAPVCVAKGMDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R+IA EH+IPI E   LAR+L+  V I+  IP   Y AVA++I
Sbjct: 299 LKIREIAREHDIPIVENVPLARALYATVKIDDEIPVEHYHAVAEII 344


>gi|237731916|ref|ZP_04562397.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2]
 gi|226907455|gb|EEH93373.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2]
          Length = 383

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 201/367 (54%), Gaps = 30/367 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLF 49
           M+E ++ D+KTEAP+  ++E A  EG  P S+E +  L   +  C+I+         L  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59

Query: 50  FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
             S G+   +S+ +D +++L+       + +  ++ L+T + L A  L+ P +L  ++F 
Sbjct: 60  MLSAGLRFDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVA--LISPVMLGGLIFS 117

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
             S             ++P F +++   GIKR++S       +K+ +K  LVG++    L
Sbjct: 118 GKS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYL 164

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             N+  M+  ++ +P + + +A   V    ++++L +  +   D+ +  +    KL+MS+
Sbjct: 165 WHNWPAMMRLMAESPITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHVKKLRMSR 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQS G+P +K + + + R+  + +MM    +A +I+TNPTHY++AL+Y + + 
Sbjct: 225 QDIRDEFKQSEGDPHVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALKYDENKM 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  L+A ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++
Sbjct: 285 SAPKVVAKGAGLVALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 344

Query: 347 YKIYHKK 353
             ++  K
Sbjct: 345 AWVWQLK 351


>gi|46200838|ref|ZP_00207865.1| COG1377: Flagellar biosynthesis pathway, component FlhB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 324

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/266 (35%), Positives = 163/266 (61%), Gaps = 4/266 (1%)

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
           LL+ +++   ++++  +++ ++  + S + Q   +   + +   F ++S  +GI RI+S 
Sbjct: 49  LLSMITMDMLKILVLPMMMLVVLALVSAMGQSGLMFLPDKLTMDFSKLSPMKGITRIFSG 108

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
            NLV F KS  K+  +G +I + L  +        + +  ++L +    V  ++++++L 
Sbjct: 109 RNLVEFAKSLFKVSAIGFVIFLVLKSHMSEYAGLAALDLMAVLDYMRHQVIAMIMIVVLM 168

Query: 203 IATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260
           +  L   D  W Y +W    ++KM+KQEIKDE KQ+ G+P+IK R +++   R R +MM 
Sbjct: 169 VFVLAAAD--WFYQRWAFNQQMKMTKQEIKDEHKQTEGDPMIKGRLRALRMQRARQRMMA 226

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
           A  +A++++TNPTHYA+AL+Y Q    APVLVAKG +LIAK++R +A E+ +PI E P L
Sbjct: 227 AVPKASVVVTNPTHYAVALQYDQDSMGAPVLVAKGVDLIAKRIRDLATENEVPIVENPPL 286

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L+  V ++  IPP  YK VA++I
Sbjct: 287 ARALYATVELDEEIPPEHYKTVAEII 312


>gi|163744325|ref|ZP_02151685.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45]
 gi|161381143|gb|EDQ05552.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45]
          Length = 372

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 191/350 (54%), Gaps = 5/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D   +KTE P+ KK+ DA  +G+ P SRE      + A L+ L+F     +  +  
Sbjct: 1   MSDEDK-SSKTEEPTEKKLRDARKKGDVPQSRETGTAMLVFALLMILVFVLPSSVGGIVE 59

Query: 61  DLHVLL----ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            L   L     +A       +     +L  L  +    ++P + + ++  +   LIQ   
Sbjct: 60  ALQAPLLEAGVTAIGTGGTGLVEAGSVLKSLGFTLGLAMMPVVGIMVLAALFGVLIQGET 119

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V++   +KP   +++   G KR++S    V F K+ VK++++G I   ++ +   ++   
Sbjct: 120 VVSAERIKPKISKLNPLSGFKRLFSAEAFVEFAKNTVKVLVIGFITVWAVRDIAQSLGQT 179

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            +  P ++L      VR + ++   F+  + + DI W   QW  K  MS +EI+DE K S
Sbjct: 180 QAFVPETLLAATLQKVRWIFLVTATFLVPIAIADIIWKRAQWKKKQMMSLKEIRDEHKDS 239

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK R+  + R+R R ++ +A   A++++TNPTHYA+AL+Y Q  +D PV VAKG 
Sbjct: 240 EGDPQIKGRRAELRRARARQRIAQAIPGASVVLTNPTHYAVALKYEQGVDDVPVCVAKGA 299

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +++A+++R++A EH+IP+ E   LAR+L   V ++  IP   ++AVA++I
Sbjct: 300 DVMAQRIRELAKEHDIPMIENRPLARALHAAVEVDDRIPMEHWQAVAEII 349


>gi|323977935|gb|EGB73021.1| flagellar biosynthetic protein FlhB [Escherichia coli TW10509]
          Length = 382

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52
           +D  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L    S
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61

Query: 53  PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            G++   ++ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F   S
Sbjct: 62  AGLHFDHNIINDPNLILGQIILLIREAMLGLLPLISGVVLVA--LISPVMLGGLVFSGKS 119

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        ++P F +++   GIKR++S       +K+ +K ILVG++    L  +
Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHH 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I
Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP
Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMNDVPKADVIVNNPTHYSVALQYDEHKMSAP 286

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  +
Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346

Query: 350 YHKK 353
           +  K
Sbjct: 347 WQLK 350


>gi|218548562|ref|YP_002382353.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ATCC
           35469]
 gi|218356103|emb|CAQ88720.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469]
 gi|324113614|gb|EGC07589.1| flagellar biosynthetic protein FlhB [Escherichia fergusonii B253]
 gi|325496979|gb|EGC94838.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ECD227]
          Length = 382

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 192/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSMLILLVGVCVIWFGG-ESLARQLA 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  + S ++    + + 
Sbjct: 58  AMLSAGLHFDHHLINDPNLILGQIILLIKQAMMALLPLITGVVLVALISPVLLGGLIFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L   +  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGCVAGFYLWHKWPEMMRLMAQS 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNALDLVGLCALLVVLGVIPMVGFDVFYQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP ++AKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMNDVPQADVIVNNPTHYSVALQYDENKMSAPKVIAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA EH+IP  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIAAEHHIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|308273532|emb|CBX30134.1| Flagellar biosynthetic protein flhB [uncultured Desulfobacterium
           sp.]
          Length = 356

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 196/357 (54%), Gaps = 10/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIY 56
           M+E +A   KTE P+ KK ED   +G    S+E S    LFS + A  IY  F  S  + 
Sbjct: 1   MAE-EASGEKTEKPTPKKREDIRKKGEVAKSKELSSVVVLFSGLFAMGIYGSFMLSK-VQ 58

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            +T  L   L++ T   L  I  ++    HL +S   ++ P L       + S + Q   
Sbjct: 59  EITKSL---LSNPTITDL-TIHGVMEFSRHLIISFVVILAPLLAAVFAGAVLSNIAQVGF 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +++   +KP F +++  +G+KR+ S+ +++   KS VK+I+VG    +++T     +   
Sbjct: 115 MVSGELIKPKFSKLNPFKGLKRLVSMQSVMELFKSMVKLIIVGATAYLTITHEMDNVSML 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                 SI ++ F T   + +   + +  L V+D  +   ++  ++KMSKQEIKDE K++
Sbjct: 175 GELELVSIFHYIFATFYNIFLKCSIAMLVLVVIDYAYQRWEFEKRIKMSKQEIKDEYKKT 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K+R ++I     R +MM+   +A +IITNPTH+A+A++Y   E +AP ++AKG 
Sbjct: 235 EGDPQVKSRIRAIQMEMARKRMMQDVPKADVIITNPTHFAVAIKYNGLEMNAPKVIAKGA 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             IA +++ +A +HNIP+ E   LAR+L+K V I   IP   Y+AVA ++  IY  K
Sbjct: 295 GEIAARIKSLAADHNIPVVENKELARNLYKLVEIGREIPADLYQAVAGVLAYIYKLK 351


>gi|209964223|ref|YP_002297138.1| flagellar biosynthesis protein FlhB [Rhodospirillum centenum SW]
 gi|209957689|gb|ACI98325.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
          Length = 359

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 201/355 (56%), Gaps = 4/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E+   D+KTE P+ KK+ DA  +G    S E  +LF  ILA  + ++    P    + 
Sbjct: 1   MAEDQDQDSKTEEPTDKKLSDAREKGQVAKSMEVGNLF--ILASGLVMVLLLLPWSGRIL 58

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            D  +         L   + +  +LT L+L  +  + P L+L ++  + + +IQ   + +
Sbjct: 59  WDAMMPFVERPHAILMAPAALGDVLTDLTLDIAFALAPTLVLLLLAALAAPIIQVGLMFS 118

Query: 120 LNHV-KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
             +V K    +V+   G+K   S+ NLV F+KS  K++LVG ++++ L   + ++  F++
Sbjct: 119 AENVFKFDLNKVNPLTGLKNKVSLKNLVEFLKSLGKLVLVGIVVSVLLLPLWTSIEHFLA 178

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S++        K++  +++ +  +   D  +  +Q+  +++M+KQE+KDE KQ+ G
Sbjct: 179 LPLPSVIVETRHEAAKLIAAVVIVLGAIAGADYAFQRYQFMQQMRMTKQEVKDEYKQTEG 238

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK++ + +   R R++MM A   A +++TNPTH+A+AL+Y  +   AP +VAKG +L
Sbjct: 239 DPLIKSKIRQLRMQRSRNRMMAAVPSADVVVTNPTHFAVALKYDASAMSAPRVVAKGADL 298

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IAK++R++A E  +P+   P LAR+LF    I+  IP   YKAVAQ+I  ++  K
Sbjct: 299 IAKRIRELAEEAGVPVISNPPLARALFATAEIDEEIPAEHYKAVAQVISYVFKLK 353


>gi|224373568|ref|YP_002607940.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH]
 gi|223588472|gb|ACM92208.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH]
          Length = 351

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 197/353 (55%), Gaps = 18/353 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  EGN P S E S F  +   +I ++F+     Y +    ++   S
Sbjct: 6   EKTEDPTPKKLQDARKEGNVPKSMETSGFVVLFVAIIVIIFYLKYITYYL-EKFYMYYTS 64

Query: 69  ATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                +E   +IVF ++   +L+   L+ P L   ++ GI   ++Q   +  +  + P F
Sbjct: 65  FIG--VEITKNIVFEIVLKSALNFFILLAPLLGAVVLAGILGNVMQFGFLFTVKPIIPKF 122

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           ++++  +GIKR++S+  LV  +K  +K+       +++     +  + F+   P   L  
Sbjct: 123 EKINPIKGIKRLFSLKTLVEGIKMTLKV-------SVAFGVGAWLFMKFLEEIPKLELMS 175

Query: 188 AFFTVR----KVLIMILLFIATLTV---LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            F  ++    K LI+I   +A   V   +D  +  + +   L+MSKQEIKDE KQ+ GNP
Sbjct: 176 FFEQLKWFEEKALIIISAMLAVFLVFAAIDFIYQRYSYKKSLRMSKQEIKDEYKQTEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + R   + +MM    +A ++ITNPTHYA+A+RY +T+++AP ++AKG + +A
Sbjct: 236 EIKAKIRQLQREMAKKRMMSEVPKADVVITNPTHYAVAIRYDKTKDEAPRVIAKGVDNLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA EH+I I E P LAR L+K V I+  IP   YKAVA+++  +Y  K
Sbjct: 296 LKIKEIAREHDIMIVENPPLARELYKLVDIDELIPQKLYKAVAEVLAFVYKAK 348


>gi|229544411|ref|ZP_04433469.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1]
 gi|229324896|gb|EEN90573.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1]
          Length = 360

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 196/351 (55%), Gaps = 14/351 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK  DA  +G    S++  + ++++   ++L  +F  G  S+ S +  L   
Sbjct: 14  EKTEKATPKKRRDARKKGQTAKSQD--IVTAVMLLAVFLFLYF--GASSIGSPMMALFRQ 69

Query: 69  A-TQRKLEDISH--IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           A ++  L+D++   +  L+T +    + +++P + + ++ G+   + Q   +     +KP
Sbjct: 70  AFSKYMLQDVTEQSVGKLMTGVMKQLASMLLPVMAVALLAGVVGNVAQTGLLFTGEGLKP 129

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANPHS 183
           +  +++   G+KRI+SI  LV  +KS +K+ +VG +    +  N    + L F SA    
Sbjct: 130 NINKINPVAGLKRIFSIRALVELLKSVLKMAVVGVVAFYVIWANIQDISGLPFKSAGDTL 189

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   +  +   + LF+  L VLD  +    +   ++MSKQEIK+E K   G+P+IK
Sbjct: 190 AAVGHLAAITGISASVALFV--LAVLDYLYQRFDFEKNIRMSKQEIKEEFKNMEGDPLIK 247

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++ +   R     +MM+    A ++ITNPTH+A+ LRY +T++DAP++VAKG + +A+K+
Sbjct: 248 SKIRQKQREMAMRRMMQEVPNADVVITNPTHFAVCLRYDETKSDAPIVVAKGADFLAQKI 307

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYH 351
           + IA EH+I + E   LAR+L++QV +   IP  F+KAVA++   +YKI H
Sbjct: 308 KSIAKEHDIVMLENRPLARALYEQVEVGGRIPEQFFKAVAEILAYVYKIKH 358


>gi|254420201|ref|ZP_05033925.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3]
 gi|196186378|gb|EDX81354.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3]
          Length = 358

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 190/355 (53%), Gaps = 2/355 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++  P++KTE  + +K+EDA  +G+   S++     S+      +L        S+  
Sbjct: 1   MADDTDPESKTEDATPRKLEDARKKGDVAKSQDVGQVLSLAGAAAVILGAGGWFAGSMAQ 60

Query: 61  DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L   +A+  Q   + D      +L     + +  +   +L  ++ G G +L Q   +  
Sbjct: 61  QLLPFIAAPHQMLGMLDSGAGAQILAQALWAMTPFLGAVMLATIIGGAGGHLAQSGLIFT 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP +  V+   G KRI+  + L+ F+K+F+K+I V  +  + L  +     + ++ 
Sbjct: 121 AEKLKPKWSSVNPMSGFKRIFGPDGLMQFVKTFLKLIAVCVVCWMVLKPHVREFENMVTL 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P ++L  A      + +  ++ +      D  W   ++  +++M+K+E+K++ KQS G+
Sbjct: 181 SPAALLPLARDMALALFVAAIILLGATAGADFIWQKMRFAKRMRMTKEELKEDYKQSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNL 298
           P IK + K I   R R +MM    +AT+I+TNPTHY++ALRY  +E D APV VAKG + 
Sbjct: 241 PHIKAKLKQIRMQRSRQRMMANVPKATVIVTNPTHYSVALRYEPSEGDGAPVCVAKGVDA 300

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A ++R++A EH +PI E   LAR+L+  V I++ IP   ++A A++I  ++  +
Sbjct: 301 LAMRIREVAKEHGVPIVENVPLARALYASVEIDAVIPKEHFEAAAKIIGFVFQSR 355


>gi|33601532|ref|NP_889092.1| flagellar biosynthesis protein FlhB [Bordetella bronchiseptica
           RB50]
 gi|33575968|emb|CAE33047.1| flagellar biosynthetic protein FlhB [Bordetella bronchiseptica
           RB50]
          Length = 384

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 178/350 (50%), Gaps = 15/350 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+EA S +++E A  EG    SRE   F  + A +         G++   S L+  L  
Sbjct: 8   EKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVA--------GVWLSGSMLYQGLTG 59

Query: 69  ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
             +R L       +D   +V    H +  A   V+P   +  +  + S ++    V +  
Sbjct: 60  VLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTK 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P+F ++SL  GIKR++S   +V  +K+  K  LVG +    +   +  ML  +   P
Sbjct: 120 PLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAP 179

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + L  A   V     +I+  +  + +LD+ W       KL+M+K++++ E K+S G+P 
Sbjct: 180 SAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDPH 239

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K R +   R+  R +MM     A +++TNPTHYA+AL+Y   E  AP +VAKG  LIA 
Sbjct: 240 VKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGEAGAPRVVAKGTGLIAA 299

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++ 
Sbjct: 300 RIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQ 349


>gi|163856421|ref|YP_001630719.1| flagellar biosynthesis protein FlhB [Bordetella petrii DSM 12804]
 gi|163260149|emb|CAP42450.1| flagellar biosynthesis protein FlhB [Bordetella petrii]
          Length = 379

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 4/344 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLA 67
            KTEA S +++E A  EG    SRE   F  +LA  +  L+     +Y  +T  L   L 
Sbjct: 8   EKTEAASPRRLEKAREEGQIARSRELGTFL-LLAAGVGGLWLSGSMLYRGLTGVLRNGLG 66

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
               R   D   +V      +  A  LV+P   + M   + + ++    V +   ++P F
Sbjct: 67  F-DARIGRDPGIMVAQAVDGAGQALLLVLPIFGVLMAVAVLASVVLGGFVFSAKPLQPDF 125

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++SL  G+KR+ S   +V  +K+  K +LVG +    +  +   ML  + A P   L  
Sbjct: 126 AKLSLFSGLKRMVSAQTVVELLKAVAKALLVGGVAVAVIGGHRDEMLALMHAAPTEALVK 185

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   V     +I+  +  + +LD+ W       KL+MSK++++ E K+S G+P IK R +
Sbjct: 186 ALTLVALCAALIVASLGIIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDPHIKARIR 245

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              RS  R +MM    RA +++TNPTHYA+ALRY + +  AP +VAKG  L+A ++R++A
Sbjct: 246 QQQRSMARRRMMSEVPRADVVVTNPTHYAVALRYAEGQA-APRVVAKGTGLVAARIRELA 304

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             H +P+ + P LAR+L++ V +   IP   Y AVA+++  ++ 
Sbjct: 305 AGHRVPLLQAPPLARALYQHVELGQEIPAALYTAVAEVLAWVFQ 348


>gi|284925607|gb|ADC27959.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 362

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S                
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMLSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A      ++ I  ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY       +   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|317048539|ref|YP_004116187.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b]
 gi|316950156|gb|ADU69631.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b]
          Length = 384

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 193/354 (54%), Gaps = 7/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++  + ++KTE+P++ ++E A  +G  P SRE    +S+L  L  ++  +  G  S+  
Sbjct: 1   MADESSDEDKTESPTAHRLEKARQDGQIPRSRE---LTSLLMMLSGIMILWLGGT-SIAR 56

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  ++A+        + D   IV  ++ L   A   V+P +   ++  I + ++    V
Sbjct: 57  RLASMVATGFRFDHGMVTDDKVIVAHISSLIGQAVLAVLPLMAGLVLVAIAAPMLLGGIV 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           ++   + P F +++   G+KR+ S       +K+ +K +LVG +    +  ++  ML  I
Sbjct: 117 ISGKSLSPDFTKLNPLSGLKRMVSGQTWAELLKAILKAVLVGLVAGWYIWSHWPEMLRLI 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S +P + L H    +    ++++L +  +   D+ W  + ++ KL+MS+Q+I+DE KQ  
Sbjct: 177 SESPMNALEHGMDMIAICCVLVMLGLIPMVGFDVFWQLYSYFKKLRMSRQDIRDEFKQQE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y   +  AP ++AKG  
Sbjct: 237 GDPHVKGRIRQAMRAAARRRMMADVPKADVIVTNPTHYSVALQYNDKKMSAPKVIAKGAG 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A K+R++  EH +PI E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 297 EVALKIRELGKEHRVPILEAPPLARALYRHTEIGQFIPGALYAAVAEVLAWVWQ 350


>gi|56413166|ref|YP_150241.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362092|ref|YP_002141729.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127423|gb|AAV76929.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093569|emb|CAR59032.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 383

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  I+  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 351


>gi|161502970|ref|YP_001570082.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864317|gb|ABX20940.1| hypothetical protein SARI_01032 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 383

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTE P+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEDPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  N+  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGSYLWHNWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PITAMGNALNLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYEENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|148926430|ref|ZP_01810113.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844593|gb|EDK21699.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 362

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S                
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A      ++ I  ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPII------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY       +   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVTQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|86153620|ref|ZP_01071823.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|157414632|ref|YP_001481888.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|4105266|gb|AAD02331.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni]
 gi|85842581|gb|EAQ59793.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|157385596|gb|ABV51911.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747272|gb|ADN90542.1| Flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931587|gb|EFV10553.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 362

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S                
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A      ++ I  ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY       +   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|157145338|ref|YP_001452657.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC
           BAA-895]
 gi|157082543|gb|ABV12221.1| hypothetical protein CKO_01078 [Citrobacter koseri ATCC BAA-895]
          Length = 383

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52
            ++ D+KTEAP+  ++E A  EG  P S+E +  L   +  C+I+         L    S
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQVPRSKELTSLLILLVGVCIIWIGGESLARRLAGMLS 62

Query: 53  PGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            G+   +S+ +D +++L        E +  ++ L+T + L A  L+ P +L  ++F   S
Sbjct: 63  AGLRFDHSMVNDPNLILGQIILLIKEAMIALLPLITGVVLVA--LISPVMLGGLIFSGKS 120

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        ++P F +++   GIKR++S       +K+ +K  LVG++    L  +
Sbjct: 121 -------------LQPKFSKLNPLSGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHH 167

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+++I
Sbjct: 168 WPEMMRLMAESPVTAMGNALDLVGLCALLVVLGVIPMVAFDVVFQIFSHLKKLRMSRKDI 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE K+S G+P IK + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP
Sbjct: 228 RDEFKESEGDPHIKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG  L+A ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  +
Sbjct: 288 KVVAKGAGLVALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 347

Query: 350 YHKK 353
           +  K
Sbjct: 348 WQLK 351


>gi|315498431|ref|YP_004087235.1| flagellar biosynthetic protein flhb [Asticcacaulis excentricus CB
           48]
 gi|315416443|gb|ADU13084.1| flagellar biosynthetic protein FlhB [Asticcacaulis excentricus CB
           48]
          Length = 355

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 189/348 (54%), Gaps = 12/348 (3%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D  ++KTE  S++K+E+A  +G+   S +     S++A    ++ +      S+T  L V
Sbjct: 3   DEGEDKTEEASARKLEEARKKGDVAKSADVPQALSLIAACALVMLYGDKIALSLTETLRV 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY--LIQRIPVLNLNH 122
            +A+    +   +      + H  L    L I  L+L +    G+   L Q   + +   
Sbjct: 63  FVAAPHLLRDSLMGDGGLTIAH-HLMGQVLPIIALILLVAGAAGAIGSLAQTGLMFSTEK 121

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP F +++   G KR++ ++ L+ F K+ +K+I VG I  + L      +     A+P 
Sbjct: 122 LKPDFSKLNPMAGFKRLFGVDALIQFAKTVIKLIAVGVITWMILKGRAGDVAGLAGASPL 181

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH----QWYSKLKMSKQEIKDEIKQSYG 238
            +L +A    ++V   + + +    +L+ G  Y     ++  ++KM+K E+KDE KQ+ G
Sbjct: 182 MVLPYA----KEVFFSLAVAVCLFMLLEGGADYFIQKLRFSQRMKMTKTEVKDEYKQTEG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R K I   + R +MM    +AT++ITNPTHYA+ALRY   E  AP+ VAKG + 
Sbjct: 238 DPHVKGRLKQIRMEKSRQRMMANVPKATVVITNPTHYAVALRY-DEETPAPLCVAKGVDT 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A K+R++A +H+I I E+P LAR+L+  + ++  IP   ++AVA++I
Sbjct: 297 LALKIREVAGDHDIAIVEDPPLARALYAAIDVDEIIPETHFQAVAKII 344


>gi|302878260|ref|YP_003846824.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans
           ES-2]
 gi|302581049|gb|ADL55060.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans
           ES-2]
          Length = 379

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 193/359 (53%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE PS ++++ A  +G    S E S FS +LA    L F  +    S+ +
Sbjct: 1   MAE-DSDLEKTEQPSQRRLDQAKEKGQVARSTELSTFSILLAGGATLWFMGA----SLNA 55

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            +  LL  A    Q  +     ++  L  LS+       P LL+ ++  +G+ LI    +
Sbjct: 56  HMVRLLHDALIFNQDVVFKPELMIPRLYDLSMDMLITFAPVLLMMLITALGAPLILNGWL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P F R++   GI RI S N+LV  +K+  K  +VG + T  +  +   ++   
Sbjct: 116 FSTEALVPQFSRMNPITGIGRIISTNSLVELVKALGKATIVGGVATWVIWHHRDDVIQLA 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSKQEIKDEIK 234
           S +  + +    + V    + I+  +  +  +D+    WS+++   KL M+K+EI+ E K
Sbjct: 176 SLSVTTAISQTGYLVCGSFLAIVSGMLLIVAIDVPFQLWSHNK---KLMMTKEEIRQESK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ GNP +K R +S+ R   R +MM A   A +++TNPTHY++AL+Y      APV+VAK
Sbjct: 233 ETDGNPEVKGRIRSMQREAARRRMMSAIPTADVVVTNPTHYSVALKYSDKGMSAPVVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G +LIA ++R+IA E+N+PI E P LAR+L K   I  AIP   Y AVA+++  +Y  K
Sbjct: 293 GSHLIAHRIREIAQENNVPILEAPPLARALHKHTEIGDAIPEALYTAVAEVLAYVYQLK 351


>gi|197265115|ref|ZP_03165189.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243370|gb|EDY25990.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 383

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESEDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|16760863|ref|NP_456480.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141445|ref|NP_804787.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163285|ref|ZP_03348995.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426385|ref|ZP_03359135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583527|ref|ZP_03365353.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|289824043|ref|ZP_06543641.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25322221|pir||AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503160|emb|CAD05665.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137072|gb|AAO68636.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 383

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|33596133|ref|NP_883776.1| flagellar biosynthesis protein FlhB [Bordetella parapertussis
           12822]
 gi|33573136|emb|CAE36781.1| flagellar biosynthetic protein FlhB [Bordetella parapertussis]
          Length = 384

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 178/350 (50%), Gaps = 15/350 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+EA S +++E A  EG    SRE   F  + A ++        G++   S L+  L  
Sbjct: 8   EKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVV--------GVWLSGSMLYQGLTG 59

Query: 69  ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
             +R L       +D   +V    H +  A   V+P   +  +  + S ++    V +  
Sbjct: 60  VLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTK 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P+F ++SL  GIKR++S   +V  +K+  K  LVG +    +   +  ML  +   P
Sbjct: 120 PLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAP 179

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + L  A   V     +I+  +  + +LD+ W       KL+M+K++++ E K+S G+P 
Sbjct: 180 SAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDPH 239

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K R +   R+  R +MM     A +++TNPTHYA+AL+Y      AP +VAKG  LIA 
Sbjct: 240 VKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAA 299

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++ 
Sbjct: 300 RIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQ 349


>gi|255021385|ref|ZP_05293433.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
 gi|254969248|gb|EET26762.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
          Length = 375

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 198/358 (55%), Gaps = 10/358 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +   +TEA + KK EDA  +G  P SRE S  + +L     L +     I ++ +
Sbjct: 1   MAEEQS-QERTEAATPKKREDARKKGQVPRSRELSTSALLLLSASLL-YGLGSEIQTMAT 58

Query: 61  DL---HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           D     + L  A     +D+   +  +  L+LS    V+P  L  M+  + + +      
Sbjct: 59  DFLRAGLRLTPAVMSNHQDLLRHLVQMAGLALSD---VLPLWLALMLVVVLASIALGGWN 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P+F  +   EGI+R++S    +  +K+ +K ++VG I    +      +L  I
Sbjct: 116 FSTKTLIPNFSHLDPIEGIQRLFSRRGFLELVKAALKTLVVGGIGVTVIWAQRGELLGLI 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQS 236
             +P S +  +  ++  ++ +I+     L VL D+ +    +  KLKMS+Q+IKDE+K+ 
Sbjct: 176 QISPKSAMV-SLLSMSGLVFLIMAVGTLLIVLFDVPFQLWSFNEKLKMSRQDIKDEMKEM 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP IK + +S+ R   R +MM A   A++++TNPTHYA+ALRY+++EN APV++AKG 
Sbjct: 235 DGNPQIKTKVRSMQREMARRRMMAAIPSASVVVTNPTHYAVALRYVESENRAPVVLAKGA 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
             +A ++R++A EH +P+ E P LAR+L+  V +   IP + Y+AVA+++  ++  ++
Sbjct: 295 GNVALRIRELAQEHGVPLVEAPPLARALYHHVELEQEIPALLYRAVAEVLAYLHQLRL 352


>gi|16765256|ref|NP_460871.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161613526|ref|YP_001587491.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994220|ref|ZP_02575312.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234020|ref|ZP_02659078.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168462551|ref|ZP_02696482.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820742|ref|ZP_02832742.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445536|ref|YP_002041180.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194472731|ref|ZP_03078715.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197251527|ref|YP_002146107.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|238912509|ref|ZP_04656346.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|729522|sp|P40727|FLHB_SALTY RecName: Full=Flagellar biosynthetic protein flhB
 gi|633115|dbj|BAA06902.1| flagellar protein FlhB [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16420451|gb|AAL20830.1| putative part of export apparatus for flagellar proteins
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|161362890|gb|ABX66658.1| hypothetical protein SPAB_01246 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404199|gb|ACF64421.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194459095|gb|EDX47934.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634185|gb|EDX52537.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197215230|gb|ACH52627.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205327877|gb|EDZ14641.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331965|gb|EDZ18729.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205342676|gb|EDZ29440.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261247084|emb|CBG24905.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993900|gb|ACY88785.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912908|dbj|BAJ36882.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085466|emb|CBY95247.1| Flagellar biosynthetic protein flhB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224557|gb|EFX49620.1| Flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|332988807|gb|AEF07790.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 383

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|307131618|ref|YP_003883634.1| flagellar biosynthesis protein flhB [Dickeya dadantii 3937]
 gi|306529147|gb|ADM99077.1| Flagellar biosynthesis protein flhB [Dickeya dadantii 3937]
          Length = 383

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 184/353 (52%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+   KTEAP+ ++ E A  EG  P SRE    +S+L  +  L   +  G   + + L 
Sbjct: 3   DDSDLEKTEAPTPQRTEKAREEGQIPRSRE---LTSVLMLIAGLAILWGSG-SGMAARLT 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            ++A         IS    +++H+      A   ++P L   ++  + + ++    + + 
Sbjct: 59  DMMAKGLIFDHNFISDERLIISHVGSLIEQAVMALVPILFGLVLVALAAPVLLGGLIFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F +++   G+KR++S + L    K+ +K ++VG I    L  N+ +ML  +S  
Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTHVLAELFKAILKAVIVGCITFWFLKHNWNSMLHLVSEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +  A          ++L +  +   D+GW       +L+MSKQEI+DE K+  G+P
Sbjct: 179 LGSAIKDALNIAFLCCFWVILGLFPMVAFDVGWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG + IA
Sbjct: 239 HVKGRVRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMHAPKVLAKGADQIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IPI E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGSEHRIPILEAPPLARALYRHTEIGHHIPTGLYAAVAEVLSWVYQLK 351


>gi|283955760|ref|ZP_06373251.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792715|gb|EFC31493.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 362

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS-------------LFSSILACLIYLLFFFSPGI 55
            KTE P+SKKIEDA  EGN P S++A+             L  S +   I  L+ +    
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLLMMSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A      ++ I  ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY       +   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|198245714|ref|YP_002215169.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197940230|gb|ACH77563.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 383

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y +++  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|326622917|gb|EGE29262.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 383

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y +++  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLSWVWQLK 351


>gi|57237386|ref|YP_178399.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni RM1221]
 gi|86149065|ref|ZP_01067297.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597389|ref|ZP_01100624.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|205356015|ref|ZP_03222783.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561994|ref|YP_002343773.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|57166190|gb|AAW34969.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni RM1221]
 gi|85840423|gb|EAQ57680.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190450|gb|EAQ94424.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359700|emb|CAL34486.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|205346139|gb|EDZ32774.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|315928679|gb|EFV07962.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 362

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 198/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S                
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A      ++ I  ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY       +   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY   +  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTGKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|329888173|ref|ZP_08266771.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC
           11568]
 gi|328846729|gb|EGF96291.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC
           11568]
          Length = 358

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 196/358 (54%), Gaps = 8/358 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--V 58
           M++   P++KTE  + +K+E+A  +G+  +++   + +++       +     G +S  +
Sbjct: 1   MADGPDPESKTEDATPRKLEEARKKGD--VAKSPDVAAALSLAGAAGVLLAGGGWFSTRI 58

Query: 59  TSDLHVLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
              L   LA   A    LE     V +  H   +A+  +   +   ++ G+G  L Q   
Sbjct: 59  AEALTPFLAQPHAMIGGLE-AGGGVEIGMHAVWAAAPFLAALMFAVILGGVGGNLAQSGL 117

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +   + VKP + +V+  EG KRI+  + LV F+K+F+K++ +G +    L  +   + + 
Sbjct: 118 IFTADKVKPKWSKVNPLEGFKRIFGPDGLVQFLKTFIKLVAIGAVCWWVLKPHARELENL 177

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            + +P  IL  A      +++  L+F++     D  W   ++  +++M+K+E+K++ KQS
Sbjct: 178 AAMSPAMILPFARDLALALMLSALVFLSLTAGADYLWQRMRFAKRMRMTKEELKEDFKQS 237

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKG 295
            G+P +K + + I   R R +MM+A   AT+IITNPTHY++ALRY   + D APV VAKG
Sbjct: 238 DGDPHVKAKLRQIRMQRGRQRMMQAVPDATVIITNPTHYSVALRYEPDKGDGAPVCVAKG 297

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A ++R++A EH +PI E   LAR+L+  V ++  IP   ++A A++I  +  ++
Sbjct: 298 VDALALRIREVAREHKVPIVENVPLARALYAAVEVDGVIPREHFEAAAKVIGFVMQQR 355


>gi|283955188|ref|ZP_06372690.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793401|gb|EFC32168.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 362

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 202/373 (54%), Gaps = 48/373 (12%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS-------------LFSSILACLIYL 47
           M+  D    KTE P+SKKIEDA  EGN P S++A+             L    +   I  
Sbjct: 1   MASED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTVTLLMMGFMGERIVN 58

Query: 48  LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFG 106
           L+ +      V  DL ++ A      ++ I  ++ +L  + LS   +++ G+L   M FG
Sbjct: 59  LYRYYQSFIGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMVAGVLGNIMQFG 111

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITIS 165
              ++    P++      P+  +++  +G+K ++S+  LV      VKIIL VG + TI+
Sbjct: 112 ---FIFTTKPIM------PNLGKINPLKGLKNLFSLKKLV----ESVKIILKVGIVFTIA 158

Query: 166 LTENYFTMLDFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQW 218
               +  +L F+   P   LY       +   R +++  ++ +A L   VLD+     Q+
Sbjct: 159 ----FIVLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVMVAFLIIAVLDVFLVRFQY 214

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
           +  L+MSKQEIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A
Sbjct: 215 FKGLRMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVA 274

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           +RY  ++  AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   
Sbjct: 275 IRYDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM 334

Query: 339 YKAVAQLIYKIYH 351
           +KAVA+++  +Y+
Sbjct: 335 FKAVAEVLGFVYN 347


>gi|91976176|ref|YP_568835.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisB5]
 gi|91682632|gb|ABE38934.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisB5]
          Length = 357

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 187/344 (54%), Gaps = 4/344 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VTSDL 62
           +D  + K + P+ K+++DAL  G+   S+E + +  ++A    LL  FS  I + VT  +
Sbjct: 3   DDNDEEKQQEPTQKRLDDALKRGDVAKSQEVNTWF-VIAGATLLLSSFSGSIGTGVTGPM 61

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
             L+  +   K++    +    + L +  S L +P L L M+  IGS LIQ   V +   
Sbjct: 62  RALIEKSWMLKVDGAGLLALTKSLLLMLVSVLGVP-LFLLMLVAIGSNLIQHRLVFSTEG 120

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P   ++S  EG KR++    L NF+K   K+I +G ++   L      +   +  +  
Sbjct: 121 LTPKLSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMDVV 180

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S+L        K++  +   +A +   D  + Y  W+ + KMS QE+KDE KQS G+P I
Sbjct: 181 SLLGVTVGLTLKLMGSVAAVLAFVAAGDYFFQYRTWHERQKMSLQEVKDEYKQSEGDPHI 240

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R + I   R++ +MM A   A+++ITNPTH+++AL+Y +    AP+ VAKG + IA K
Sbjct: 241 KGRIRQIRYQRMKKRMMAAVPSASVVITNPTHFSVALKY-ERGMQAPICVAKGADAIAFK 299

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R++A  +N+PI E   LAR+L+  V ++  IP   Y AVA++I
Sbjct: 300 IREVAKANNVPIVENVPLARALYATVEVDGEIPIEHYHAVAEVI 343


>gi|90423033|ref|YP_531403.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisB18]
 gi|90105047|gb|ABD87084.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisB18]
          Length = 358

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 189/346 (54%), Gaps = 3/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+ + KT+ P+ K+++DAL  G+   S+E + +  I    + L  F       + +
Sbjct: 1   MSDDDSSE-KTQDPTQKRLDDALERGDVAKSQEVNTWFMIAGATLVLSSFSGSVGSGLQN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+ ++   + +    +    + L  + + + +P L+L +    G+ L  R+ V + 
Sbjct: 60  PLRNLIENSWMIRTDGAGLMALTQSLLYAAIAAMGVPFLMLIIAALAGNMLQHRL-VFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F ++S   G KR++      NF+K   K+I +G ++   L    + +   I  +
Sbjct: 119 EGLKPKFSKISPLAGAKRLFGKQAAANFLKGLFKVIALGAVMVAILWPERYRLDAMIRLD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +I+        K++  ++  +A + + D  + Y  WY K KMS QE+K+E KQS G+P
Sbjct: 179 IGAIMGLTIALTLKLMAAVVAMLAAVAIADFFFQYRTWYEKQKMSLQEVKEEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I   R+R +MM A  +A+++ITNPTHY++AL Y +    AP+ VAKG + IA
Sbjct: 239 HIKGRIRQIRHQRMRKRMMAAVPQASVVITNPTHYSVALSY-ENGMSAPICVAKGVDSIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R++A  H++PI E   LAR+L+  V I+  IP   Y AVA++I
Sbjct: 298 FKIREVAKAHDVPIIENVPLARALYATVKIDEEIPVEHYHAVAEII 343


>gi|283785619|ref|YP_003365484.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168]
 gi|282949073|emb|CBG88678.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168]
          Length = 382

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 194/367 (52%), Gaps = 31/367 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLF 49
           MSE +  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L  
Sbjct: 1   MSEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWIGGESLARRLSA 58

Query: 50  FFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
             S G+   +S+ +D  ++L        E +  ++ L+T + L A  L+ P LL  ++F 
Sbjct: 59  MLSAGLRFDHSMVNDPSLILGQIILLIKEAMIALLPLITGVVLVA--LISPVLLGGLIFS 116

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
             S             ++P F +++   GIKR++S  +    +K+ +K  LVG +  + L
Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRMFSAQSGAELLKAVLKSTLVGGVTALYL 163

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
              +  M+  ++ +P + +  A   V    ++++L +  +   D+ +       KL+MS+
Sbjct: 164 WHKWPQMMRLMAESPITAMGDALDLVGLCALLVVLGVIPMVGFDVIFQIFSHLKKLRMSR 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQS G+P +K R + + R+  R +MM     A +I+TNPTHY++AL+Y + + 
Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMQRAAARQRMMSDVPNADVIVTNPTHYSVALQYDENKM 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  L+A ++R+I  E+ IP  E P LAR+L++   I   IP   Y AVA+++
Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENKIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343

Query: 347 YKIYHKK 353
             +   K
Sbjct: 344 AWVLQLK 350


>gi|153952141|ref|YP_001398614.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939587|gb|ABS44328.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 362

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 199/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S                
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A   +   E    ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIIIKSIFE----VLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY      A+   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVAQLAWLRDRSIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVADADVVITNPTHYAVAIRYDTSKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|62180491|ref|YP_216908.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583582|ref|YP_002637380.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62128124|gb|AAX65827.1| putative part of export apparatus for flagellar proteins
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468109|gb|ACN45939.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714967|gb|EFZ06538.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 383

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIRELGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|296135634|ref|YP_003642876.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12]
 gi|295795756|gb|ADG30546.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12]
          Length = 373

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 194/369 (52%), Gaps = 38/369 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL----ACLIYLL--FFFSPG 54
           M+E+ A + +  A S K+ + A  +G   ++R   L SS+L    A ++Y    +F+  G
Sbjct: 1   MAEDSAQEKELPA-SQKRKQQAREKGQ--VARSRDLTSSLLLLGMAAVVYTAGGWFYDMG 57

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--------LLFMMFG 106
              + + L V  ASA+Q    D + ++        +A R+++ GL        L F+   
Sbjct: 58  RELLQTGLTVS-ASASQ----DPAAML-------QAAGRVLVLGLIVLAPVLALTFLASA 105

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
            G   +    V +   + P F R+   +GI R++SI  L    K+ +K I++  I  I +
Sbjct: 106 AGGVAMGGW-VFSTEALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVI 164

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKL 222
                 +L  +   P      A   + ++     L++A+ T+L    D+ W   Q   KL
Sbjct: 165 WNERGALLGLLQVEPQ----LAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKL 220

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           KMS+Q+++DE+++S GNP IK + + + R R R +MM A  +A +++TNPTHYA+AL Y 
Sbjct: 221 KMSRQDLQDEMRESEGNPQIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYK 280

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + +N APV++A G + +A ++R++A EHN+P+ E P LAR+LF    +   IP   Y AV
Sbjct: 281 EGKNRAPVVLALGADRVAARIREVAAEHNVPVIEAPPLARALFHHAELEQEIPVALYNAV 340

Query: 343 AQLIYKIYH 351
           A L+  ++ 
Sbjct: 341 ALLLAYVFQ 349


>gi|283832722|ref|ZP_06352463.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
 gi|291072402|gb|EFE10511.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
          Length = 383

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 198/366 (54%), Gaps = 31/366 (8%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFF 50
            E+D  D+KTEAP+  ++E A  EG  P S+E +  L   +  C+I+         L   
Sbjct: 3   EESD--DDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAGM 60

Query: 51  FSPGI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
            S G+   +S+ +D +++L+       + +  ++ L+T + L A  L+ P +L  ++F  
Sbjct: 61  LSAGLRFDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVA--LISPVMLGGLIFSG 118

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
            S             ++P F +++   GIKR++S       +K+ +K  LVG++    L 
Sbjct: 119 KS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLW 165

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
            N+  M+  ++ +P + + +A   V    ++++L +  +   D+ +  +    KL+MS+Q
Sbjct: 166 HNWPEMMRLVAESPITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHLKKLRMSRQ 225

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           +I+DE KQS G+P +K + + + R+  + +MM    +A +I+TNPTHY++AL+Y + +  
Sbjct: 226 DIRDEFKQSEGDPHVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALQYDENKMS 285

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG   +A ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++ 
Sbjct: 286 APKVVAKGAGPVALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLA 345

Query: 348 KIYHKK 353
            ++  K
Sbjct: 346 WVWQLK 351


>gi|167552446|ref|ZP_02346199.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168241547|ref|ZP_02666479.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259807|ref|ZP_02681780.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194451224|ref|YP_002045968.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|200389783|ref|ZP_03216394.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207856565|ref|YP_002243216.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|194409528|gb|ACF69747.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|199602228|gb|EDZ00774.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322918|gb|EDZ10757.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205339229|gb|EDZ25993.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350661|gb|EDZ37292.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708368|emb|CAR32672.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 383

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|317133470|ref|YP_004092784.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense
           YUAN-3]
 gi|315471449|gb|ADU28053.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense
           YUAN-3]
          Length = 356

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 197/357 (55%), Gaps = 16/357 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M E  A D KTE  + K+ ED   +G+   S + +   ++L     L       I S++ 
Sbjct: 1   MPEASAGD-KTEKATPKRREDERKKGHVVQSPDVTSAVAMLGTFAVLRVMGPSMIKSLSD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPV 117
            +  +LA+ T      +S    +   ++ + S L+   +P +L+     + + L Q   +
Sbjct: 60  GMRGMLANLTS----AVSGYEDMRARMTAALSVLIGVAVPVMLVAFAATVATTLAQTRLL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           ++L+ +KP   R++  EGIKR++S+ +LV   KS +K++LVG ++   +     T+L   
Sbjct: 116 VSLDQLKPDLSRLNPLEGIKRLFSVRSLVELGKSILKVVLVGAVVYFEIQPQMHTILLLY 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           + +    L  +F  V  +L  I + +A     L  +D  + + Q+   ++M+K+EIK+E 
Sbjct: 176 NMS----LAQSFSWVAGILADIGIKVAGVMLLLGAIDYFYQWFQYEKDIRMTKEEIKEEY 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  GNP IK + K++ R   R +MM+   +A +++ NPTH+A+AL+Y   +  APV VA
Sbjct: 232 KQMEGNPEIKGKIKNLQRQMARRRMMQDVPKADVVLRNPTHFAVALKYEHGKQRAPVCVA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           KG+N +A ++ +IA E+++ I E+P L R+L++ V +   IP  FYKAVA+++  IY
Sbjct: 292 KGRNAVALRIVEIAEENHVYIREDPPLTRALYQAVEVGGQIPAEFYKAVAEVLAYIY 348


>gi|86151337|ref|ZP_01069552.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315123900|ref|YP_004065904.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841684|gb|EAQ58931.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315017622|gb|ADT65715.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 362

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 198/364 (54%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGI 55
            KTE P+SKKIEDA  EGN P S++A+    ++  +   LF  S                
Sbjct: 7   EKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTITLFMMSFMGERIVNLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQR 114
             V  DL ++ A      ++ I  ++ +L  + LS   ++I G+L   M FG   ++   
Sbjct: 67  IGVEFDLRIIQAIM----IKSIFEVLIILAPIVLS---IMIAGVLGNIMQFG---FIFTT 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P+  +++  +G+K ++S+  +V  +K  +K   VG + TI+    +  +L
Sbjct: 117 KPIM------PNLGKINPLKGLKNLFSLKKIVESIKIILK---VGIVFTIA----FIVLL 163

Query: 175 DFISANPHSILYH-----AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY       +   R +++  ++ +A L   VLD+     Q++  L+MSKQ
Sbjct: 164 KFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQ 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++ 
Sbjct: 284 APRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLG 343

Query: 348 KIYH 351
            +Y+
Sbjct: 344 FVYN 347


>gi|302343745|ref|YP_003808274.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM
           2075]
 gi|301640358|gb|ADK85680.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM
           2075]
          Length = 364

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 199/359 (55%), Gaps = 13/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SV 58
           M++N A + KTE P+ ++   A  +G    S+E      + A L+  L+ F   +Y  S 
Sbjct: 1   MADNTAQE-KTEKPTPRRRSKAREKGQVAKSQELGSIGVLFAGLM-CLYAFGGFVYDQSA 58

Query: 59  TSDLHVL-LASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           T   H+L  A+ T   L  + ++ + L+ H      R + P +L  ++ G+   + Q   
Sbjct: 59  TMMTHILSRAAETPVSLAQVHNLSIDLMGHFL----RTLAPFMLAVVLAGVAVNVAQTGF 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTML 174
           +L  + ++P  K+++  EG+K+  S+  LV  +K+  KI +VG +  + L +    F  +
Sbjct: 115 MLATSRLRPDLKKINPLEGLKKFVSMRMLVEAIKNTGKICVVGLVAYLVLADELPNFPNI 174

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +      ++Y A   +R + +  L  +  L +LD  +  +Q+   LKMSKQEIKDE K
Sbjct: 175 GKLGGLTAMLIYIADVCLR-IFLWSLAAMFILAILDYAYQKYQFEKGLKMSKQEIKDEFK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           Q+ G+P +K+R + + R R   +MM A  +A ++ITNPTH A+A+ Y   + DAP +VAK
Sbjct: 234 QTEGDPHVKSRIRQLQRERAMKRMMAAVPQADVVITNPTHLAVAIFYQAGQMDAPEVVAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           GQN IA++++ +A E+N+PI E+  LA++L+K V +   IP   + AVA ++  +Y +K
Sbjct: 294 GQNKIAERIKALAQENNVPIIEDKPLAQALYKSVEVGQRIPFELFGAVAAILAHVYREK 352


>gi|301158434|emb|CBW17943.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|323130198|gb|ADX17628.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 383

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVIDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|90415339|ref|ZP_01223273.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2207]
 gi|90332662|gb|EAS47832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2207]
          Length = 382

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 192/356 (53%), Gaps = 11/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D+ + + E P++K++E    +G    S+E  + + ++    +L  F   G Y + +
Sbjct: 1   MSDKDSSEEREEEPTAKRLEKGREDGQVARSQELGVAAMMIGVAFFLYLF---GSY-IIA 56

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           DL  + AS     ++ + D S +V      ++++  +V+P  +L ++  I S  I    +
Sbjct: 57  DLTKVFASGFTFDRKAVFDTSLLVPAFGIQAVNSFIVVVPIFVLAVIIAIASAGIMGGYI 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLD 175
            +L  + P   +++   G+KR++ +  +V+  K+  K  L+  ++ + ++ N+   T L 
Sbjct: 117 FSLKSLAPKASKINPMAGLKRMFGMKAVVDLSKALSKFALIALVLYLVVSANFPMLTKLG 176

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           F+   P             VL+ + L +A    +DI +  H +  ++KM+KQE+K+E+K 
Sbjct: 177 FMDLEPAMAEAGRIIAFGTVLVTLTLIVAA--AIDIPYQLHTFNKQMKMTKQEVKEEMKD 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G P +K + +   R      MM A + A ++I NP H+A+AL Y  ++N AP++VAKG
Sbjct: 235 TEGRPEVKAQIRRKQREIATGMMMSAIADADVVIVNPEHFAVALSYDPSKNGAPIMVAKG 294

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +L+AK +R+ A E  IP+F  P LARS+F    IN ++P   Y AVAQ+I  I++
Sbjct: 295 ADLLAKAIRERAKEEGIPLFSSPVLARSIFYTTEINQSVPESLYYAVAQVIAYIFN 350


>gi|271500057|ref|YP_003333082.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586]
 gi|270343612|gb|ACZ76377.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586]
          Length = 383

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 187/359 (52%), Gaps = 19/359 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+   KTEAP+ ++ E A  EG  P S+E +    ++A L  L  + S    S+   L 
Sbjct: 3   DDSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGS----SMAGRLS 58

Query: 64  VLLASA---------TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            ++A            +R +  ISH+  LL    L+    ++P L   ++  +G+ ++  
Sbjct: 59  DMMAKGLIFDHGFINDERLI--ISHVGTLLEQAVLA----LVPILFGLVLVALGAPILLG 112

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             + +   +   F +++   G+KR++S   L    K+ +K ++VG I    L  N+ +ML
Sbjct: 113 GLIFSTKAISFDFGKMNPLSGLKRMFSTQVLAELFKAILKAVIVGLITFWFLRHNWNSML 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +S      +  A          ++L +  +   D+ W       +L+MSKQEI+DE K
Sbjct: 173 HLVSEPMGMAIKDALNIAFLCCFWVILGLFPMVGFDVAWQIWSHIKRLRMSKQEIRDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P IKNR +   R+  + +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AK
Sbjct: 233 EHEGDPHIKNRIRQQQRAMAQRRMMSDVPKADVIVTNPTHYAVALKYDEKKMSAPRVLAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + IA+++R++  E+ IPI E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 293 GADRIAQRIRELGTENRIPILEAPPLARALYRHTEIGQQIPTGLYAAVAEVLSWVYQLK 351


>gi|125973005|ref|YP_001036915.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC
           27405]
 gi|256004802|ref|ZP_05429777.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
           2360]
 gi|281417216|ref|ZP_06248236.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20]
 gi|125713230|gb|ABN51722.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC
           27405]
 gi|255991252|gb|EEU01359.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
           2360]
 gi|281408618|gb|EFB38876.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20]
 gi|316940759|gb|ADU74793.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
           1313]
          Length = 392

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 187/356 (52%), Gaps = 17/356 (4%)

Query: 8   DN--KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           DN  KTE  + +K   A  EG    SRE +    +L+  + L  F   G Y     L  L
Sbjct: 39  DNGEKTEKATPRKRSKAREEGQVLQSRELNSAIVLLSAFVTLRIF---GQYMYEEILKCL 95

Query: 66  LASATQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
             + T   L D    I  +  L     ++  ++  P L++ ++ GIGS   Q   +    
Sbjct: 96  KVAITVYPLNDGLFTIDGLFELYGETVITFLKIATPVLMVVLIAGIGSAYAQVGFLFTTK 155

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFI 177
            +     R++  +G KRI+S+ +LV  +KS +KI LVG I    I   +T N   M+D  
Sbjct: 156 TLGIKLSRINPLKGFKRIFSLKSLVELLKSIIKIALVGYIGYGYIKGEMT-NVLGMMDVD 214

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  S L     T+    I + +    + V D G+ + ++   L+MSKQEIK+E K+  
Sbjct: 215 VVSSASFLGS---TILNAAIRMCIAFVVIGVADYGYQWWEYEKSLRMSKQEIKEENKEVE 271

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK+R +   R     +M++   +A ++ITNPTHYA+A++Y   E DAPV+VAKGQ+
Sbjct: 272 GNPEIKSRIRQKQRQMSMRRMLQDIPKADVVITNPTHYAVAIKYDPKEADAPVVVAKGQD 331

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A ++++IA EH + I E   LA++L+K V I   IPP  Y+AVA+++  +Y  K
Sbjct: 332 YMALRIKEIAKEHKVEIVENKPLAQTLYKTVEIGGKIPPELYQAVAEVLAFVYSLK 387


>gi|291288733|ref|YP_003505549.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885893|gb|ADD69593.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM
           12809]
          Length = 352

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 189/339 (55%), Gaps = 4/339 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA NEGN   SRE     ++L  + +  +++ P +    + L   +  
Sbjct: 6   EKTEDPTGKKLTDAKNEGNVAKSRELPAAVTLL-LVTFFFYYYGPYLMHGLARLIREIFM 64

Query: 69  ATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            T  ++   S H + L +   + +++L+ P + L ++ G+ S ++Q   +     +    
Sbjct: 65  MTNYEINTQSAHKIMLFS--IIESAKLLAPFMALVLVVGVASNVLQTGFMFTPKALSAKL 122

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R+   +G  R +S  +LV  MKS  K+ +V  +  + + ++  T++     + + I   
Sbjct: 123 ERIDPIKGFGRFFSKKSLVELMKSLFKVFVVTYVAYLIVKKHIVTIISMADMDFYDIFSV 182

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V +++  + L    + + D  +  +Q+   LKMSK E+K+E KQ+ G+P +K R +
Sbjct: 183 FGKIVYEIMWKVSLLALFMALADFIFQKYQFKQDLKMSKHEVKEERKQAEGDPHVKGRIR 242

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
           SI R   R +MM+   ++ +++TNPTH+A+AL+Y   E+ APV++AKGQ L+A ++++IA
Sbjct: 243 SIQREMARKRMMDDVPKSDVVVTNPTHFAVALKYSPGEDRAPVVMAKGQRLMALRIKEIA 302

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +  I + E+P +ARSLFK V I   IP   YKAVA+++
Sbjct: 303 KQSGILVHEDPPIARSLFKTVDIGDEIPENLYKAVAEIL 341


>gi|266618907|ref|ZP_06111845.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
 gi|263528671|gb|EEZ28380.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
          Length = 413

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 65  ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 124

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 125 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 183

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 184 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 243

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 244 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 296

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 297 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 355

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 356 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 410


>gi|299534768|ref|ZP_07048098.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1]
 gi|298729856|gb|EFI70401.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1]
          Length = 362

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 191/353 (54%), Gaps = 16/353 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +DA  +G    S++ S  S+I+  ++++  FF  G  S+  +L      
Sbjct: 15  EKTEKATPKKRQDARKKGQVVKSQDIS--SAIVMLMVFIFLFFFAG--SLRDELLAFFRQ 70

Query: 69  ATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                +      I  ++ L T   +  + +++P + +  +  +    +Q   +  L  +K
Sbjct: 71  TFIHNIRIESLTIDSVMHLFTETLIQMAFIIVPIMAIAFVGALAGNFMQFGFLFTLEPMK 130

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
              K++   +G+K+I+S+  +V  +KS +KI  +G++ TI +  N   +L     +P   
Sbjct: 131 FDLKKMDPIKGLKKIFSVKAIVELIKSVLKIGFIGSVTTIIIWSNLPEVLALSFKSP--- 187

Query: 185 LYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +    TV K++    I   L +  ++VLD  +  H++   LKMSKQ+IKDE K S G+P
Sbjct: 188 -WMTLITVGKLVGIMGIAASLVLLCVSVLDWMYQKHEYEKNLKMSKQDIKDEYKNSEGDP 246

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK++ K   R     +MM     A ++ITNPTHYA+AL+Y +   DAP ++AKG + IA
Sbjct: 247 LIKSKIKQRQREMAMRRMMSEVPSADVVITNPTHYAIALKYNEDSMDAPRVIAKGTDFIA 306

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K++ IA EH++ + E   LAR+++ QV I   +P  F+KAVA+++  +Y  K
Sbjct: 307 QKIKLIAKEHDVIMVENRPLARAMYDQVEIGDQVPEEFFKAVAEILAYVYRIK 359


>gi|33592472|ref|NP_880116.1| flagellar biosynthesis protein FlhB [Bordetella pertussis Tohama I]
 gi|33572118|emb|CAE41658.1| flagellar biosynthetic protein FlhB [Bordetella pertussis Tohama I]
 gi|332381889|gb|AEE66736.1| flagellar biosynthesis protein FlhB [Bordetella pertussis CS]
          Length = 384

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 176/350 (50%), Gaps = 15/350 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+EA S +++E A  EG    SRE   F  + A +         G++   S L+  L  
Sbjct: 8   EKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVA--------GVWLSGSMLYQGLTG 59

Query: 69  ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
             +R L       +D   +V    H +  A   V+P   +  +  + S ++    V +  
Sbjct: 60  VLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTK 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P+F ++SL  GIKR++S   +V  +K+  K  LVG +    +   +  ML  +   P
Sbjct: 120 PLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAP 179

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + L  A   V     +I+  +  + +LD+ W       KL+M+K++++ E K+  G+P 
Sbjct: 180 SAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDPH 239

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K R +   R+  R +MM     A +++TNPTHYA+AL+Y      AP +VAKG  LIA 
Sbjct: 240 VKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAA 299

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++ 
Sbjct: 300 RIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQ 349


>gi|294339803|emb|CAZ88166.1| Flagellar biosynthetic protein FlhB [Thiomonas sp. 3As]
          Length = 373

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 194/369 (52%), Gaps = 38/369 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL----ACLIYLL--FFFSPG 54
           M+E+ A + +  A S K+ + A  +G   ++R   L SS+L    A ++Y    +F+  G
Sbjct: 1   MAEDSAQEKELPA-SQKRKQQAREKGQ--VARSRDLTSSLLLLGMAAVVYTAGGWFYDMG 57

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--------LLFMMFG 106
              + + L V  ASA+Q    D + ++        +A R+++ GL        L F+   
Sbjct: 58  RELLQTGLTVS-ASASQ----DPAAML-------QAAGRVLVLGLIVLAPVLALTFVASA 105

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
            G   +    V +   + P F R+   +GI R++SI  L    K+ +K I++  I  I +
Sbjct: 106 AGGVAMGGW-VFSTEALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVI 164

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKL 222
                 +L  +   P      A   + ++     L++A+ T+L    D+ W   Q   KL
Sbjct: 165 WNERGELLGLLQVEPQ----LAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKL 220

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           KMS+Q+++DE+++S GNP IK + + + R R R +MM A  +A +++TNPTHYA+AL Y 
Sbjct: 221 KMSRQDLQDEMRESEGNPQIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYK 280

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + +N APV++A G + +A ++R++A EHN+P+ E P LAR+L+    +   IP   Y AV
Sbjct: 281 EGKNRAPVVLALGADRVAARIREVAAEHNVPVIEAPPLARALYHHAELEQEIPVALYNAV 340

Query: 343 AQLIYKIYH 351
           A L+  ++ 
Sbjct: 341 ALLLAYVFQ 349


>gi|242238960|ref|YP_002987141.1| flagellar biosynthesis protein FlhB [Dickeya dadantii Ech703]
 gi|242131017|gb|ACS85319.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech703]
          Length = 383

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 189/358 (52%), Gaps = 17/358 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+   KTEAP+  + E A  EG  P SRE    +SI+  ++ L   +  G   V   L 
Sbjct: 3   DDSDLEKTEAPTPHRKEKAREEGQIPRSRE---LTSIMMLVVGLGILWMAGDI-VARRLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTH----LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           +LL+       E IS    +L H    L L  S LV P +L  ++  I + ++    + +
Sbjct: 59  LLLSQGLFFTHEMISDDKQMLKHMLGLLKLGGSALV-PIILGTVVVAIAAPVMLGGLIFS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++ +  +++   GIKR+ S   L    K+ +K ++VG I ++ L  N+  +L  +S 
Sbjct: 118 TKQMEFNLNKLNPISGIKRLVSSQMLAELFKAILKAVVVGGITSLFLWHNWQDILRLVSE 177

Query: 180 NPHSI----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
              S     L+ A F    VLI ++  +      D+ W       KL+MSKQ+I+DE KQ
Sbjct: 178 PLFSAVTDSLHFAIFCGFFVLIGLIPMVG----FDVFWQIWSHLKKLRMSKQDIRDEFKQ 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P +K R + + R+  + +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG
Sbjct: 234 NEGDPHVKGRIRQLQRAMAQRRMMADVPKADVIVTNPTHYAVALQYNEQKMSAPKVLAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
              IA K+R++  EH IPI E P LAR+L+K   I   IP   Y AVA+++  +Y  K
Sbjct: 294 AGEIALKIRELGNEHKIPILEAPPLARALYKHSEIGKNIPSTLYAAVAEVLVWVYQIK 351


>gi|85859183|ref|YP_461385.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus
           SB]
 gi|85722274|gb|ABC77217.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus
           SB]
          Length = 354

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 194/355 (54%), Gaps = 5/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    +TE  + K+ E+A  +G    SR+ +  + + ACL+Y  F  +  ++ +  
Sbjct: 1   MAESNKDQERTEEATPKRREEAREQGQVAKSRDLASVAILSACLLYFYFGANSFLHQLMD 60

Query: 61  DLHVLLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            +    +S     +  E+I  ++F   + +++   L+ P LL+  +  + S ++Q    +
Sbjct: 61  LMKSSFSSLDSSLVTTENIQSLLFSAFYKTIT---LMTPFLLVVCIAALSSNILQVGFKI 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P   ++   +G  R++S+ +L+ F+KS  KI + G +  +++      +L    
Sbjct: 118 STKAIAPKLSKIDPAKGFARLFSLQSLIEFIKSIFKISIAGFVAYLTVKSELVDILPLAD 177

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           ++   IL +   T  ++L+     +  L ++D  +   ++   LKMS+QEIKDE KQ+ G
Sbjct: 178 SSVWEILVYITGTSFRILLTTCWVLIILALMDYLYQRWEYERNLKMSRQEIKDENKQTEG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +PI+K R + + R   + +MM    +A +IITNPTH A+AL+Y Q    AP ++AKG   
Sbjct: 238 DPIVKARIRRLQREMAQRRMMANVPKADVIITNPTHLAVALQYDQDSMIAPKVIAKGAGY 297

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A+K+++IA E  +P+ E   LA+ L+K V ++  IP   YKAVA+++  IY  K
Sbjct: 298 LAEKIKEIARESRVPLVENKPLAQVLYKMVEVSGTIPDSLYKAVAEILAYIYSIK 352


>gi|16125329|ref|NP_419893.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15]
 gi|221234068|ref|YP_002516504.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000]
 gi|1147737|gb|AAA85127.1| third gene in fliQ operon; membrane protein homolog [Caulobacter
           vibrioides]
 gi|13422379|gb|AAK23061.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15]
 gi|220963240|gb|ACL94596.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000]
          Length = 361

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 201/369 (54%), Gaps = 33/369 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGN----APISREASLFSSILACLIY-------LLF 49
           M+++  P++KTE PS+KK+ DA  +G+    A I + ASL  ++   L+        L+ 
Sbjct: 1   MADDTDPESKTEEPSAKKLSDARAKGDVIKSADIPQLASLAGAVSVILLAGGWLTRDLMA 60

Query: 50  FFSP-----GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104
             +P     G   ++S   +++             +V ++T  + +A+ +   G LL   
Sbjct: 61  ALTPFIAHAGTIDLSSGGAMIVLKQALLAALPALVLVMVVTAFAGAAAHIAQTGFLL--- 117

Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
                             +KP F+++ L +G+ RI+  + +V F+KS VK +L G I   
Sbjct: 118 --------------TPEKIKPDFQKLDLIKGLGRIFGPDGMVQFLKSAVKFLLTGVIAYF 163

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
            L  +   + + +  +P +++  A    + +LI ++L +   +  D  W   ++ ++++M
Sbjct: 164 VLKPHVGEVRNLVGMDPAAMIPEAMKLSKGLLIAVILLLVATSAFDYFWQRMRFMNRMRM 223

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           + QE+K+E KQS G+P IK +++ I   R R +MM+A  +AT+++ NPTHYA+AL+Y Q 
Sbjct: 224 TLQEVKEEFKQSDGDPHIKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEQG 283

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E  AP+ VAKG + +A K+R +A EH +P+ E+P LAR+L+  V I+  IP   ++AVA+
Sbjct: 284 ETPAPLCVAKGVDDLALKIRAVAEEHGVPVLEDPPLARALYASVEIDEEIPVEHFEAVAK 343

Query: 345 LIYKIYHKK 353
           +I  I + K
Sbjct: 344 VISFILNGK 352


>gi|114765217|ref|ZP_01444349.1| flagellar biosynthesis protein B [Pelagibaca bermudensis HTCC2601]
 gi|114542352|gb|EAU45380.1| flagellar biosynthesis protein B [Roseovarius sp. HTCC2601]
          Length = 375

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 185/353 (52%), Gaps = 12/353 (3%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            +++  DNKTE P+ +K+  A  +G+   S+EA    ++L+      F        +   
Sbjct: 3   DQDEDKDNKTEEPTERKLRKAREKGDVASSKEAGNVMAVLSLFAITAFVLPSVSAPLAGV 62

Query: 62  LHVLLASATQ-------RKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
              +L SA Q         L D+  + + +L  + +    L+ P + L ++  +    +Q
Sbjct: 63  FRNVLESAGQVHVGTDLSGLRDLGAVSWKVLRGVGI----LLGPLMALMVIGALAGVALQ 118

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              V+    +KP + ++S   G KR++S+   V F KS  K++LVG I    +      +
Sbjct: 119 GEVVVASERLKPKWSKISPISGFKRLFSLAAFVEFFKSVTKVLLVGVIAGWVVLNAVGQI 178

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                  P  +         ++L++ L  ++ + V DI W       K +MS +EIKDE+
Sbjct: 179 WQTQGLVPEMVTDFIRAEAARMLLITLALVSVIAVADILWKRFDHRRKQRMSMKEIKDEV 238

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G+P+I++++ +I R R R ++ +A  RAT+++TNPTH+A+AL+Y    + APV VA
Sbjct: 239 KETEGDPLIRSKRMNIRRERARQRLAQAVPRATVVLTNPTHFAVALKYENGVDMAPVCVA 298

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           KG +L+A ++R++A E+ IP+ E   LAR+L     ++  IP   ++AVA +I
Sbjct: 299 KGADLLAARIRELAKENEIPMVENRPLARALHDVAELDRPIPVEHWEAVAAII 351


>gi|119897394|ref|YP_932607.1| flagellar biosynthesis protein FlhB [Azoarcus sp. BH72]
 gi|119669807|emb|CAL93720.1| flagellar biosynthetic protein FlhB [Azoarcus sp. BH72]
          Length = 381

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 188/352 (53%), Gaps = 9/352 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE  S +++E A  EG  P SRE S F   +  ++ L      G +     L 
Sbjct: 3   EDSDLEKTEPASGRRLEQAREEGQVPQSRELSTFLVTMTGVVTLWLL---GEWMAQRLLG 59

Query: 64  VLLAS-ATQRKLEDISHIVFLLTHLSLSASRLV--IPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  S A +R++    H + L    SL    L+  +P  L  ++  + S +     V   
Sbjct: 60  MIRRSFAFEREMA-FDHTLILAELQSLLGGALLTLMPLFLALLVAAVASPIALGGLVFAP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F R++  +G+ R++S++ L   +K+ +K +LVG +    L      + D +   
Sbjct: 119 KALGPNFGRMNPIQGLGRMFSVHGLAEMVKAILKALLVGGVGAAVLWYYKDHLFDLM-VE 177

Query: 181 PHSILYHAFF-TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           P  +    F  TV    ++I   +  L +LD+ +   Q++ +L+M+K+E+K E K+  G+
Sbjct: 178 PLEVGMPDFAETVVFTALLITASLGLLALLDVPFQLWQYHKRLRMTKEEVKREAKEQDGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +++ R   R +MM A  +A +++TNPTH+++AL+Y      APV+VAKG+  +
Sbjct: 238 PQLKGRIRAMQREMARGRMMAAVPKADVVVTNPTHFSVALKYDAERMGAPVVVAKGRGEL 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A K+R+IA E+++P+ E P LAR+L+    +  AIP   Y AVA+++  +Y 
Sbjct: 298 AMKIREIARENDVPLLEAPPLARALYAHCELEQAIPAALYTAVAEVMAYVYQ 349


>gi|260757056|ref|ZP_05869404.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str.
           870]
 gi|260677164|gb|EEX63985.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str.
           870]
          Length = 165

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 118/160 (73%)

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
           ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P++K+R +S+ R R
Sbjct: 3   RLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGRDR 62

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA K+R+IA  H+IP
Sbjct: 63  ARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIP 122

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 123 VFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 162


>gi|326796452|ref|YP_004314272.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea
           MMB-1]
 gi|326547216|gb|ADZ92436.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea
           MMB-1]
          Length = 378

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 195/356 (54%), Gaps = 7/356 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE  SSKK++DA  +GN  ++R   L S+ L  +  +  +F+  I ++  
Sbjct: 1   MAENEDGTEKTEDASSKKLDDARKKGN--VARSKDLSSAALLIVAAMSIYFTGRILAI-- 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LN 119
           DL  L       + +D+     ++ HL  SA  ++   +LL  +  +   +       LN
Sbjct: 57  DLGNLFHFNFVIERQDLFDKARMIFHLYESAVGVIDSMILLMGVLAVAGIVGSIGIGGLN 116

Query: 120 LNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P   +++   G+KRI S+ +LV  +KS  K++LVG+I T+ +      +L   
Sbjct: 117 FSWEPLTPKLSKLNPISGLKRIASVQSLVELLKSIAKVLLVGSIATVVIMLYLPELLGLP 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  + + H+   +    I + L +  +  +DI +   +  + LKM+KQE+KDE KQ+ 
Sbjct: 177 FESVGNAVQHSTEVLIWAFIFVSLALVFIAAIDIPFQIWKHSNDLKMTKQEVKDEHKQAE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + + +    ++MM    +A +IITNPTH+++AL+Y  T +DAPV++AKG +
Sbjct: 237 GDPQVKGRIRQMQQQMAMNRMMSDVPKADVIITNPTHFSVALKYDTTSSDAPVVLAKGPD 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA K+R++A  + IP+ + P L R+++K   +   +P   +K VAQL+  ++  K
Sbjct: 297 FIAMKIREVANFYEIPVIQSPDLTRAIYKHTEVGEQVPEGLFKVVAQLLAYVFQLK 352


>gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3
           str. Loch Maree]
          Length = 609

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + IP+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEIPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
           15579]
 gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
           15579]
          Length = 587

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 188/348 (54%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 239 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 298

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 299 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 357

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 358 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLKDNYLKILNLGTLRPWYMI 417

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  ++V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 418 TGLLSLAISIFFKITLIMLFISVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 477

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + +A K++ 
Sbjct: 478 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDSAPKVVAKGADYVAIKIKD 536

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 537 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 584


>gi|269836606|ref|YP_003318834.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM
           20745]
 gi|269785869|gb|ACZ38012.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM
           20745]
          Length = 361

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 183/344 (53%), Gaps = 1/344 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE  + K+ +DA  +G+ P S E S  + +L  L +L ++      ++T        
Sbjct: 3   EERTERATPKRRQDARRQGDVPRSAELSAAAGLLGALAFLQWYGGQAAGALTGYFRGTFG 62

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             +   L  ++ I  L     +  +R+V P + + ++ GI + + Q  PV  L  +KP F
Sbjct: 63  GLSPSDLTPLA-IQNLAWESGMVFARVVGPLVAVVLVVGIAAGVAQTGPVFALAALKPDF 121

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           KR++   G+KRI+S        K+ VK++++  +    L            A+P SI   
Sbjct: 122 KRINPAAGLKRIFSRRGAFETFKALVKLVIIAALTYPVLRAEVAHFASLTGAHPVSIAEA 181

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
              T+ KV +        L + D  +   ++  +L+M++QE+++E++Q  GNP +K+R +
Sbjct: 182 VGRTLVKVGLRAAGAFFILALADYAFQRWEYERRLRMTRQELREELRQIEGNPELKSRIR 241

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R   R +MM A  +AT+++TNPTH A+A+RY      APV+VAKG  L A+++++IA
Sbjct: 242 QLQRQLARGRMMHAVPKATVVVTNPTHLAVAIRYEMRTMPAPVVVAKGSGLTAERIKQIA 301

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            EH +P+ E   LA++L++   + + IP   Y+AVA +I  +Y 
Sbjct: 302 REHAVPVVENKPLAQALYRMADVGAEIPVALYEAVADVIAYVYR 345


>gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402
           065]
          Length = 609

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGTNELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
           str. 657]
 gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
           str. 657]
          Length = 609

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum B1 str. Okra]
 gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1
           str. Okra]
          Length = 609

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|51596001|ref|YP_070192.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           32953]
 gi|51589283|emb|CAH20904.1| flagellar biosynthetic/export protein FlhB [Yersinia
           pseudotuberculosis IP 32953]
          Length = 386

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 189/362 (52%), Gaps = 25/362 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+E P++ K+E A  +G  P SRE    +S+L     L   +  G  S+   L 
Sbjct: 3   EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58

Query: 64  VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
            ++A          S  ++ L  I  ++   LL  L + A  LVI  L + M+ G G   
Sbjct: 59  AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                + +   +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+ 
Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M+  I+A P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+D
Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G+P +K R +   R+  R +MM    +A II+TNPTHYA+AL+Y +++  AP +
Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADIIVTNPTHYAVALQYNESKMSAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG   +A ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y 
Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
           str. ATCC 3502]
 gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum A str. Hall]
 gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
           str. ATCC 19397]
 gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
           str. Hall]
          Length = 609

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|91776296|ref|YP_546052.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus
           KT]
 gi|91710283|gb|ABE50211.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus
           KT]
          Length = 381

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 192/357 (53%), Gaps = 19/357 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE P+ ++IE A  +G+ P SRE S    ++A  + L+   S    ++ S++ 
Sbjct: 3   QDSDLEKTEQPTPRRIEKAREDGDVPRSREFSTCVVLMAGGLGLMMLGSRLNQAMLSNM- 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNL 120
               S+ +   E       LL+ ++     L+I   P +LL ++  +G+ ++  +   N 
Sbjct: 62  ---ISSLRISREAAFDFSLLLSKIASGVLDLLIAFAPLILLLLVVIVGAPVL--VGGWNF 116

Query: 121 NHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           ++    P F +++   GIK ++S N+LV  +K+ +K  LVGT+  + +  ++ T+L    
Sbjct: 117 SNKAFLPKFSKLNPLNGIKNLFSKNSLVELIKAILKAALVGTVSYMVMAHDFDTLLSL-- 174

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIK 234
             P   L      V  +LI   LFI +  VL    D+ +    + +KLKM+K+E+K E K
Sbjct: 175 --PTQPLETGIAQVDDILIKGFLFIVSALVLVALIDVPYQRWSYTNKLKMTKEEVKQEAK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +S GNP IK R +   R   R +MM    +A ++ITNPTHYA+A++Y      AP ++AK
Sbjct: 233 ESDGNPQIKGRIRQQQREMARRRMMAEIPKADVVITNPTHYAVAIKYDDQSMAAPRVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G + IA K+R+IA EHN+ I E P LAR+LF    +   IP   Y AVA+++  ++ 
Sbjct: 293 GADDIALKIREIAGEHNVAILESPKLARALFAHTELGDEIPQALYAAVAEILAYVFQ 349


>gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
           str. Kyoto]
 gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
           str. Kyoto]
          Length = 609

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
           NCTC 2916]
 gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
           NCTC 2916]
          Length = 609

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAIALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|293395574|ref|ZP_06639857.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582]
 gi|291421893|gb|EFE95139.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582]
          Length = 391

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 186/358 (51%), Gaps = 21/358 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-------IY 56
            D+   K+EAP+  ++E A  EG  P SRE    +SIL  +  L   +  G         
Sbjct: 11  EDSDLEKSEAPTPHRVEKAREEGQIPRSRE---LTSILMLIAGLAILWVGGSNLARQLAQ 67

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            +T  LH         +   + H + +L   ++ A   V+ GL+L  +      L+  I 
Sbjct: 68  MLTDGLHFDHGMVNNDR--QMLHQLGMLLRQAVWALLPVMAGLVLVAL--TAPMLLGGI- 122

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           + +   +K   KR++   G+KRI+S   L   +K  +K +LVG +  + L  N+  ML  
Sbjct: 123 LFSGKSLKFDLKRLNPLSGLKRIFSSQVLAELLKGVLKALLVGWVTGLFLWHNWAAMLHL 182

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEI 233
           ++  P   L +A   V    ++++L +  +   D+   ++Q +S   KLKM+KQ+I+DE 
Sbjct: 183 VTQQPLDALANALQMVVFCGLLVVLGLVPMVAFDV---FYQLWSHIKKLKMTKQDIRDEF 239

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K+  G+P +K R +   ++  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++A
Sbjct: 240 KEQEGDPHVKGRIRQQQQAIARRRMMSDVPKADVIVTNPTHYAVALQYNDKQMSAPRVLA 299

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG   IA ++R++A +H IP  E P LAR+L++   I   IP   Y AVA+++  +Y 
Sbjct: 300 KGAGEIALRIRELAAQHRIPTLEAPPLARALYRHSEIGQHIPTTLYAAVAEVLAWVYQ 357


>gi|167470753|ref|ZP_02335457.1| flagellar biosynthesis protein FlhB [Yersinia pestis FV-1]
          Length = 386

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 25/362 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+E P++ K+E A  +G  P SRE    +S+L     L   +  G  S+   L 
Sbjct: 3   EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58

Query: 64  VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
            ++A          S  ++ L  I  ++   LL  L + A  LVI  L + M+ G G   
Sbjct: 59  AMVAQGLHFGHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                + +   +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+ 
Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M+  I+A P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+D
Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP +
Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG   +A ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y 
Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|251789159|ref|YP_003003880.1| flagellar biosynthesis protein FlhB [Dickeya zeae Ech1591]
 gi|247537780|gb|ACT06401.1| flagellar biosynthetic protein FlhB [Dickeya zeae Ech1591]
          Length = 383

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 186/357 (52%), Gaps = 15/357 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+   KTEAP+ ++ E A  EG  P S+E +    ++A L  L  + S    S+   L 
Sbjct: 3   DDSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGS----SMAGKLT 58

Query: 64  VLLASA---TQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            ++A         + D    ISH+  LL    L+    ++P L   ++  + + ++    
Sbjct: 59  DMMAKGLIFDHNLISDERLFISHVGALLKQAMLA----IVPILFGLVLVALAAPVLLGGL 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           + +   +   F +++   G+KR++S + L    K+ +K ++VG I    L  N+ +ML  
Sbjct: 115 IFSTKAISFDFGKLNPLSGLKRMFSTHVLAELFKAILKAVIVGCITYWFLLHNWNSMLHL 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +S      +  A          +++ +  +   D+ W       +L+MSKQEI+DE K+ 
Sbjct: 175 VSEPMGIAIKDALNIAFLCCFWVIMGLFPMVAFDVAWQIWSHIKRLRMSKQEIRDEYKEH 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK R +   R+  + +MM    +A +I+TNPTHYA+AL+Y + + +AP ++AKG 
Sbjct: 235 EGDPHIKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMNAPKVLAKGA 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A+++R++  E+ +PI E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 295 DRVAQRIRELGAENRVPILEAPPLARALYRHTEIGQQIPAGLYAAVAEVLSWVYQLK 351


>gi|167420299|ref|ZP_02312052.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166961994|gb|EDR58015.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
          Length = 390

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 25/362 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+E P++ K+E A  +G  P SRE    +S+L     L   +  G  S+   L 
Sbjct: 3   EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58

Query: 64  VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
            ++A          S  ++ L  I  ++   LL  L + A  LVI  L + M+ G G   
Sbjct: 59  AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                + +   +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+ 
Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M+  I+A P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+D
Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP +
Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG   +A ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y 
Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum F str. Langeland]
 gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
           str. Langeland]
 gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
           str. 230613]
          Length = 609

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 16/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEDATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH--- 182
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P    
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 183 ----SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               S+    FF +     +I+LFIA   V D  +  +Q+   LKM+KQE+K+E KQ  G
Sbjct: 440 TGLLSLAISIFFRIT----LIMLFIA---VADYVYQKYQYNKDLKMTKQEVKEEYKQDEG 492

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + 
Sbjct: 493 DPQIKSKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRY-EKGDTAPKVVAKGADY 551

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 552 VAIKIKDIAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|308187224|ref|YP_003931355.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1]
 gi|308057734|gb|ADO09906.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1]
          Length = 383

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 189/357 (52%), Gaps = 15/357 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+ ++KTE+P++ ++E A  EG  P SRE +    +LA ++ L      G   +   L 
Sbjct: 3   EDSDEDKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWM----GGNMMAHRLA 58

Query: 64  VLLASA---TQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            ++A+        + D    +SHI  L+T  +L A   ++ GL+L     I + ++    
Sbjct: 59  AMVATGLRFDHGMVRDDKIIVSHIGSLITQ-ALMALLPLMGGLVLV---AIAAPMLLGGL 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   +K   K++S   G KR+++        K  +K ILVG +    +  ++  ML  
Sbjct: 115 VFSGKSIKFDLKKMSPMAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRL 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           IS  P + L H    +     +++L +  +   D+ W  +  + KLKMS QEI+DE KQ 
Sbjct: 175 ISEAPVTALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQ 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG 
Sbjct: 235 EGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGA 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             IA ++R++A EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 295 GEIALRIRELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 351


>gi|22126401|ref|NP_669824.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10]
 gi|45441419|ref|NP_992958.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807160|ref|YP_651076.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua]
 gi|108812495|ref|YP_648262.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516]
 gi|145598622|ref|YP_001162698.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F]
 gi|149366261|ref|ZP_01888296.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125]
 gi|165925946|ref|ZP_02221778.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938738|ref|ZP_02227293.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010865|ref|ZP_02231763.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210428|ref|ZP_02236463.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401110|ref|ZP_02306613.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167425790|ref|ZP_02317543.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024657|ref|YP_001721162.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186895104|ref|YP_001872216.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928912|ref|YP_002346787.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92]
 gi|229896231|ref|ZP_04511401.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A]
 gi|229897166|ref|ZP_04512322.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897892|ref|ZP_04513043.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902876|ref|ZP_04517993.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
 gi|270486660|ref|ZP_06203734.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27]
 gi|294504041|ref|YP_003568103.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|21959388|gb|AAM86075.1|AE013854_11 flagellar biosynthesis protein [Yersinia pestis KIM 10]
 gi|45436280|gb|AAS61835.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776143|gb|ABG18662.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
 gi|108779073|gb|ABG13131.1| flagellar biosynthetic protein FlhB [Yersinia pestis Antiqua]
 gi|115347523|emb|CAL20431.1| flagellar biosynthetic protein FlhB [Yersinia pestis CO92]
 gi|145210318|gb|ABP39725.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides F]
 gi|149292674|gb|EDM42748.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125]
 gi|165913352|gb|EDR31974.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922150|gb|EDR39327.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990209|gb|EDR42510.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207608|gb|EDR52088.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167049499|gb|EDR60907.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055189|gb|EDR64986.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751191|gb|ACA68709.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186698130|gb|ACC88759.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680323|gb|EEO76422.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
 gi|229688933|gb|EEO80998.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693503|gb|EEO83552.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701154|gb|EEO89183.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A]
 gi|262361772|gb|ACY58493.1| flagellar biosynthesis protein [Yersinia pestis D106004]
 gi|262366091|gb|ACY62648.1| flagellar biosynthesis protein [Yersinia pestis D182038]
 gi|270335164|gb|EFA45941.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27]
 gi|294354500|gb|ADE64841.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
          Length = 386

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 25/362 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+E P++ K+E A  +G  P SRE    +S+L     L   +  G  S+   L 
Sbjct: 3   EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58

Query: 64  VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
            ++A          S  ++ L  I  ++   LL  L + A  LVI  L + M+ G G   
Sbjct: 59  AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                + +   +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+ 
Sbjct: 115 -----LFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M+  I+A P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+D
Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP +
Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG   +A ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y 
Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|170748648|ref|YP_001754908.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655170|gb|ACB24225.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 355

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 180/336 (53%), Gaps = 8/336 (2%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL---LASAT 70
           PS ++++ A+  G+   S E + F+ +L      L   +P I   T+ LH L   LA+A 
Sbjct: 14  PSQRRLDQAIERGDVATSTEINTFA-MLGAFTLALLVAAPTI--ATNLLHGLKAYLANAH 70

Query: 71  QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130
               +  +    +   L L    + +P + L ++ G+ + L+Q   V +   + P F R+
Sbjct: 71  ALPDDAAAMKAAMTRGLWLWLQAVAVP-VGLAVVAGLAAGLLQHPLVFSAETLMPKFSRL 129

Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
           S   G+KR+  +  L  F K   KI  VG +  + L  +   +  F   +P + +     
Sbjct: 130 SPMAGVKRLLGVEALFQFGKGLAKIAAVGVVGAVMLWNDRDRLEVFARLDPAASMPAILS 189

Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
              K+L  +L     +T+ D  ++  +W  + +MSK+E+K E+K+S GNP +K R K + 
Sbjct: 190 LSLKLLAGMLCMHLAITLGDALYARFRWRKRHRMSKEELKQEMKESEGNPEVKGRLKQLR 249

Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
            +R++ +MM A   AT+++TNPTHYA+ALRY +T   APV VAKG + +A ++R +A EH
Sbjct: 250 MARVKKRMMAAVPTATVVVTNPTHYAVALRY-ETGMAAPVCVAKGVDALALRIRAVAAEH 308

Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            + + E P LAR+L   V I+  IP   Y+AVA++I
Sbjct: 309 GVAVIENPPLARALHATVEIDREIPAEHYRAVAEVI 344


>gi|220932506|ref|YP_002509414.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168]
 gi|219993816|gb|ACL70419.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168]
          Length = 356

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 186/341 (54%), Gaps = 1/341 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE P+ +++  A  +G    S+E S   +++   + L F     IYS+T+ +   L+  
Sbjct: 9   KTEKPTPRRLRKARQQGQVAKSQELSSAFTLMGGFLVLFFIIKNIIYSLTNRMSYFLSLE 68

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
              K+ D++ +  L+      A RL+ P LL   + G+    +Q  P+   + +KP  K+
Sbjct: 69  AYNKINDVNSLYILIDSFYFIA-RLISPVLLASAIIGLVVNFLQVGPLFVPDLIKPDLKK 127

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++   G KR++S+ ++V  +KS  KI +V  +  + L  ++ T+++         + +  
Sbjct: 128 INPISGFKRLFSLKSVVELIKSLFKIAIVAILAYLQLKNSWQTLINLSRQGITEAVAYLG 187

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
             + KV I I++ +  L + D  +   ++   LKM+KQE+K+E K+  G+P IK++++  
Sbjct: 188 HLIFKVAITIIICLVVLGIADYIYQKWEYIRNLKMTKQEVKEEHKEIEGDPRIKSKRREK 247

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R    ++M++A   A ++ITNPTH A+AL+Y     +APV+VAKG+  IAKK+++ A E
Sbjct: 248 QREMTLNRMIKAMEEADVVITNPTHIAVALKYDINSMEAPVVVAKGEGFIAKKIKEKARE 307

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             I I E   LAR+L     I   IP   Y+AVA+++  +Y
Sbjct: 308 LKIEIVENKPLARALNATTEIGEEIPVDLYQAVAEVLAFLY 348


>gi|330720472|gb|EGG98776.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC2047]
          Length = 378

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 191/359 (53%), Gaps = 17/359 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D+   KTE  + K++EDA  +G+ P S+E +  + +L     LL F       +++
Sbjct: 1   MAESDSGQEKTEEATPKRLEDAKKKGDIPRSKELNTTAILLGGTGALLAFGG----GISA 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASR---LVIPGLLLFMMFGIGSYLIQRIPV 117
            L  ++++  +   +DI     +L HL  S +     +IP  ++ M+  I   +     V
Sbjct: 57  GLSNMMSANFRFSRDDIFDPQVMLIHLGQSMAESMMALIPFFIVVMLAAIIGPIALGGWV 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTML 174
           ++   + P  +R+S   GIKR+++   L+  +K+  K +LV T   +I   +T +   + 
Sbjct: 117 MSGKSLAPKGERISPLAGIKRMFAKQALMELLKTIAKFLLVATLSLVILDFMTNDILAIA 176

Query: 175 --DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
             D I A  H++    +  +     MIL+     +++D+ +       KLKM+ QE+KDE
Sbjct: 177 KEDTIPAMAHTLRIVGWSVLAMSCTMILI-----SIIDVPFQISSHAKKLKMTMQEVKDE 231

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K + G P +K+R + +     + +MM A   A ++ITNP HYA+AL+Y      AP+LV
Sbjct: 232 MKNTEGKPEVKSRIRQLQYDMAQGRMMSAVPEADVVITNPEHYAVALKYNSDNMGAPLLV 291

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           AKG + IA K+R+IA  H+IP+ E P LAR++F    +   IP   Y AVAQ++  ++ 
Sbjct: 292 AKGADHIAFKIREIAKAHDIPVLEAPPLARAVFYSTELEQEIPAGLYVAVAQVLAYVFQ 350


>gi|57168473|ref|ZP_00367607.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228]
 gi|305432892|ref|ZP_07402050.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20]
 gi|57020281|gb|EAL56955.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228]
 gi|304444046|gb|EFM36701.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20]
          Length = 362

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 198/363 (54%), Gaps = 44/363 (12%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-------------PGIY 56
           KTE P+SKKIEDA  EGN P S++A+   +++   +  LF                    
Sbjct: 8   KTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIVGFVITLFMMGFIGERITNLYRYYQSFI 67

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRI 115
            V  DL ++ A      ++ I  ++ LL  + LS   ++I G+L   M FG   ++    
Sbjct: 68  GVEFDLRIIQAIM----IKSIFEVLILLAPIVLS---IMIAGILGNVMQFG---FIFTTK 117

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           P++      P+  +++  +G+K ++S+  LV  +K  +K   VG + T++    +  +L 
Sbjct: 118 PIM------PNLGKINPLKGLKNLFSLKKLVESVKIVLK---VGVVFTVA----FIVLLK 164

Query: 176 FISANP----HSILYHAFFTVRKVLIMILLFIA---TLTVLDIGWSYHQWYSKLKMSKQE 228
           F+   P    ++I+    +   + +I+  + I     + VLDI     Q++  L+MSKQE
Sbjct: 165 FMQELPLVERYNIIGQLIWLRDRAIILAAIVIIAFLVIAVLDIFLVRFQYFKGLRMSKQE 224

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           IKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+A+RY  T+  A
Sbjct: 225 IKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTTKEQA 284

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P +VAKG + +A +++++AY++N+ ++E P LAR L+K   IN  IP   +KAVA+++  
Sbjct: 285 PRVVAKGVDFLALRIKQVAYDNNVVVYENPPLARELYKACDINDLIPREMFKAVAEVLGF 344

Query: 349 IYH 351
           +Y+
Sbjct: 345 VYN 347


>gi|218778857|ref|YP_002430175.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760241|gb|ACL02707.1| Flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
           AK-01]
          Length = 358

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 194/354 (54%), Gaps = 11/354 (3%)

Query: 5   DAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-YSVTSDL 62
           D+P ++KTE P+ KK +DA  +G    SR+ S    ++A L  +++ F P + Y +TS +
Sbjct: 3   DSPNEDKTEQPTPKKRDDARKKGQVAKSRDLSSVVVLMAGL-GIMYMFGPYMHYHITSLM 61

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            ++     +   +E+I+ +   +    L    ++ P L    + G  S  +Q     +  
Sbjct: 62  ENIFTTDVSAWGVEEINTLGREMVREFLF---ILAPILAGVFVVGFASAAVQVGFYFSWE 118

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
              P F +++   G  R++S   LV   KS  K+ +VG I  +++      ++     + 
Sbjct: 119 AAAPKFSKINPISGFGRMFSKQALVELAKSLAKLFIVGFISYLTIEAEMDNLILLGQVDA 178

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGN 239
            + L +    + K+ I + + +  + VLD  +++ +W+   +LKM+KQE+KDE KQ+ G+
Sbjct: 179 ANTLAYVLKIILKLFIRVGIIMVFVAVLD--FAFQKWHHEQQLKMTKQEVKDEYKQTDGD 236

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K R + I     R +MME   +A +++TNPTH ALA++Y      AP++VAKG   I
Sbjct: 237 PMVKARIRRIQMEAARRRMMEEVPKADVVVTNPTHLALAIKYNALTMGAPLIVAKGAGPI 296

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K++++A E+++PI E   LAR+L+K V I   +P   Y+AVA+++  +Y  K
Sbjct: 297 AQKIKEVARENDVPIVENKELARALYKVVDIGDEVPVALYEAVAEVLAYVYGLK 350


>gi|300717104|ref|YP_003741907.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
 gi|299062940|emb|CAX60060.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
          Length = 381

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 191/351 (54%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+ + KTE+ +  +IE A  EG  P SRE    +S+L  +  L   +  G  ++   + 
Sbjct: 3   GDSEEEKTESATPHRIEKAREEGQIPRSRE---LTSVLMLVAGLSILWITGA-TMARKIG 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LLA         + D S ++ LL +L       +IP +   ++  I + ++    V++ 
Sbjct: 59  ALLADGLKFNHSVVSDTSQMLHLLGNLVQQGIFTLIPMMAGLVLVAIAAPMLLGGVVISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +GI +++S       +KS +K ILVG +  + +  ++  ML  IS +
Sbjct: 119 KAIKFDVGKMNPIKGIGKLFSGQTAAELLKSVLKAILVGCVTWLYIRHHWPDMLRLISES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P++ L ++   +    ++++  ++ + + D+ W  + ++  L+M++Q+I+DE KQ  G+P
Sbjct: 179 PYNALANSLNMIAMCSVLVVFGLSPMVMFDVFWQLYSYFKGLRMTRQDIRDEYKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDERKMSAPKVVAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++  EH IPI E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 299 LRIRELGKEHRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQ 349


>gi|146312093|ref|YP_001177167.1| flagellar biosynthesis protein FlhB [Enterobacter sp. 638]
 gi|145318969|gb|ABP61116.1| flagellar biosynthetic protein FlhB [Enterobacter sp. 638]
          Length = 382

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 196/363 (53%), Gaps = 29/363 (7%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILA-CLIY---------LLFFFSP 53
           D  D+KTEAP+  +++ A  +G  P SRE  SL   I+  C+I+         L    S 
Sbjct: 3   DDSDDKTEAPTPHRLDKAREDGQVPRSRELTSLLILIVGVCIIWFGGGAFANRLAGMLSA 62

Query: 54  GI---YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
           G+   +S+ +D +++L+         +  ++ L++ + L A  LV P +L  ++F   S 
Sbjct: 63  GLRFDHSIVNDQNLILSQIILLIKNAMIALLPLISGVVLVA--LVSPIMLGGLIFSGKS- 119

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                       ++P F +++   GI +++S       +K+ +K  L+G+     L  ++
Sbjct: 120 ------------LQPKFSKLNPFPGIAKMFSAQTGAELLKAILKSTLMGSTAGFYLWHHW 167

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
             M+  +S +P + + +A   V    ++++L I  +   D+ +  +    KL+MS+Q+++
Sbjct: 168 PDMMRLLSESPLTAMRNAMDLVGFCAVLVVLSIIPMVGFDVFFQIYSHIKKLRMSRQDLR 227

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  G+P +K R + + R+  R +MME   +A +I+TNPTHY++AL+Y + +  AP 
Sbjct: 228 DEYKQMEGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALKYDENKMSAPK 287

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG  LIA ++R+I  E+ +P+ E P LAR+L++   I   IP   Y AVA+++  ++
Sbjct: 288 VVAKGAGLIALRIREIGSENRVPVLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVW 347

Query: 351 HKK 353
             K
Sbjct: 348 QLK 350


>gi|89094442|ref|ZP_01167382.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
 gi|89081334|gb|EAR60566.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
          Length = 379

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 187/361 (51%), Gaps = 23/361 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE P+ K+I +A  +G+ P S+E +    ++A +  ++ F S     +   + 
Sbjct: 3   EDSGQEKTEDPTPKRIREAREKGDVPRSKELATTLVLMAAVFSVIIFSS----QLAESML 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121
            ++ S      + +     +L H  +SA   ++    +F +  + + L+  I +   N  
Sbjct: 59  GMMESNFVLDRQSVFDTNKMLAHFEVSAEEAIMGLAGIFAVLALAA-LVGPIALGGWNFS 117

Query: 122 --HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTMLDF 176
              + P   R+    GIKR++S+ +L+   K+  K  LVG    +I  ++ E+   +  +
Sbjct: 118 GQSIVPKGSRIDPLAGIKRMFSLKSLIELFKAIAKFSLVGGFAILILWTIREDILALASY 177

Query: 177 IS----ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            +         I+   F  +  VLI++        V+D+ +  + +  K++M+ QE+KDE
Sbjct: 178 EARVAIDEALDIIIWVFMALSAVLILV-------AVVDVPYQLYDYTQKMRMTMQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K + G P +K R + + R   + +MM+A   A ++ITNPTHY++AL+Y      APVL+
Sbjct: 231 LKNTEGKPEVKGRIRQLQREIAQRQMMQAVPEADVVITNPTHYSVALKYDGENRGAPVLL 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA EH+IPI   P LAR+++    I+  IP   Y AVAQ++  ++  
Sbjct: 291 AKGADFVALKIREIAKEHDIPILSAPPLARAIYNSTEIDDEIPSGLYMAVAQVLAYVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|153947600|ref|YP_001401303.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           31758]
 gi|152959095|gb|ABS46556.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP
           31758]
          Length = 386

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 188/362 (51%), Gaps = 25/362 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+E P++ K+E A  +G  P SRE    +S+L     L   +  G  S+   L 
Sbjct: 3   EDSDQEKSEEPTASKLEKAREKGQIPRSRE---LTSMLMLGAGLTILWMSG-ESMARQLS 58

Query: 64  VLLA----------SATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
            ++A          S  ++ L  I  ++   LL  L + A  LVI  L + M+ G G   
Sbjct: 59  AMVAQGLHFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAG-LVIVALAVPMLLG-GV-- 114

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                + +   +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+ 
Sbjct: 115 -----LFSGESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWP 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M+  I+A P + L  A   +    ++++L +  +   D+ +       KL+M+KQ+I+D
Sbjct: 170 DMMRLIAAPPVAALGDALHLIIFCGLVVVLGLLPMVGFDVFYQITSHIKKLRMTKQDIRD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP +
Sbjct: 230 EFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG   +A ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y 
Sbjct: 290 LAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|332284010|ref|YP_004415921.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7]
 gi|330427963|gb|AEC19297.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7]
          Length = 386

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 182/366 (49%), Gaps = 32/366 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57
           M+E D+   KTE  S +++E A  EG    SRE + F  +LA  +  L+    G+Y    
Sbjct: 1   MAE-DSDLEKTEPASPRRLEKAREEGQVARSRELNTFL-LLAAGVATLWLSGAGLYEGLT 58

Query: 58  ------------VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
                       V  D  V++A A    LE I      LT L L     V+  + +    
Sbjct: 59  DILRAGLWFDLRVGRDTDVMVALAATSALEAI------LTLLPLFG---VLVAVAILASV 109

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
            +G +L      L+   ++P F+R++  +G+ R++S   LV  +K+  K  ++G +  + 
Sbjct: 110 ALGGFL------LSGKALEPKFERLNPLKGMGRMFSAQTLVELIKTLAKASVIGIVAVMV 163

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           ++     M+  + A     L      V     +I+  +  + ++D  W  +  Y K++MS
Sbjct: 164 MSHYLDQMISLMHATVSEALTRGIGLVALCCALIVGGLILIVLIDAPWQIYSHYKKMRMS 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           ++++K E K+S G+P +K R +   R+  R +MM     A +I+TNPTHYA+AL Y   +
Sbjct: 224 REDVKQEHKESDGDPHVKGRIRQQQRAMARRRMMSEVPNADVIVTNPTHYAVALSYKDGQ 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG  L+A ++R++A EH +P+   P LAR+L   V +   IP   Y AVA++
Sbjct: 284 AGAPRVVAKGSGLVAARIREVAQEHKVPMLSAPPLARALHHHVELGKEIPGDLYAAVAEV 343

Query: 346 IYKIYH 351
           +  ++ 
Sbjct: 344 LAWVFQ 349


>gi|315638787|ref|ZP_07893959.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           JV21]
 gi|315481005|gb|EFU71637.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           JV21]
          Length = 356

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 192/364 (52%), Gaps = 44/364 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-------------LFFFSPGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +  L             L+ +    
Sbjct: 7   EKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVANLYRYYQSF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
             V  DL ++ A      ++ I  ++ +L  + LS            M+ GI   ++Q  
Sbjct: 67  IGVEFDLRIIQAIM----MKSIFEVLIILAPIVLS-----------IMVAGIIGNVMQFG 111

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITISLTENYFTML 174
            +     + P+  +++  +G+K ++S+  L+      VKIIL VG + TI+    +  +L
Sbjct: 112 FIFTTKPIMPNLSKINPLKGLKNLFSLKKLI----ESVKIILKVGVVFTIA----FIVLL 163

Query: 175 DFISANPHSILY----HAFFTVRKVLIMILLFIATLTV---LDIGWSYHQWYSKLKMSKQ 227
            F+   P   LY       +   K LI+  + I    +   LD+     Q++  LKMSKQ
Sbjct: 164 QFVKELPKVELYSLAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQ 223

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+ALRY  T+ +
Sbjct: 224 EIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKEN 283

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A +++++AY+HN+ ++E P LAR L+K   ++  IP   +KAV+++  
Sbjct: 284 APRVVAKGVDFLALRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFK 343

Query: 348 KIYH 351
            +Y 
Sbjct: 344 FVYQ 347


>gi|251772429|gb|EES52996.1| flagellar biosynthetic protein FlhB [Leptospirillum
           ferrodiazotrophum]
          Length = 365

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 191/354 (53%), Gaps = 8/354 (2%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           +END    + E P+S+++E A  EG    SRE   F  + A LI +  + S  +  +  D
Sbjct: 4   NENDG-QLRQEEPTSRRLEKAREEGQVARSREVGYFFFLAASLILMASYGSRLVEGLRDD 62

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           +   L  + +  L     I   +  L L       P L  F++FG+ +Y++Q   +++  
Sbjct: 63  MSYYLRHSGEISLTP-DGITPFVKGLVLHEMGRTFPLLGGFLVFGVAAYIVQGGILVSPK 121

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
                + RVS  +GIKR++S   L   ++  +K+++   I+  +L +++ T+   +    
Sbjct: 122 AAAIKWNRVSPSQGIKRLFSWRALEELLRYTIKVVVSLLILFYALKQDWMTLPALMETGA 181

Query: 182 HSI---LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           H +   LYH  F V   L+  L   A L + D  +        L+M++ EIK+E K++ G
Sbjct: 182 HRMVGALYHFTFVV---LVSFLPLYAALAIGDYLFQRFMMMRGLRMTRTEIKEETKETEG 238

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P ++ R +SI R+  R +MM     AT++ITNPTH+A+ L+Y      APV+VAKG + 
Sbjct: 239 DPHVRARIRSIQRAMARRRMMSKIKDATVVITNPTHFAVVLKYHPESMAAPVVVAKGADE 298

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +A ++R+IA E  +P+ E+P  AR LF++ P++  IP  FY+AVA+++  +Y +
Sbjct: 299 VAFRIREIAREVGVPVVEDPPTARGLFRECPLDREIPFTFYEAVARILSILYQR 352


>gi|307731376|ref|YP_003908600.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003]
 gi|307585911|gb|ADN59309.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003]
          Length = 401

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 185/366 (50%), Gaps = 47/366 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE+ + +++E A  EG    SRE S F+     L+   FF   G+++++  +      
Sbjct: 8   EKTESATPRRLEKAREEGQIARSRELSTFA-----LLAAGFF---GVWAMSGSIG----- 54

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY----LIQRIPV------- 117
              + L+D+    F   H ++  +R         MM G G+     L   +P+       
Sbjct: 55  ---QHLQDMLRTAFTFDHATVFETRR--------MMTGAGTASREGLYALLPILALTGAA 103

Query: 118 ------------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
                       L+   ++P F R++   G+ +I+SIN  V  + S  K ++VG I   +
Sbjct: 104 ALLAPMALGGWQLSTKGLEPKFDRLNPIAGLGKIFSINGPVQLVMSIAKTLVVGIIGGTA 163

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +      +L   +   H  L +    +     M +  +  +  LD+ +   Q++ KL+MS
Sbjct: 164 IWNRREEILALSTQPLHLALANTVHLIAVCCAMTVAGMFVVAALDVPYQLWQFHKKLRMS 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E+K E ++S G+P +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E
Sbjct: 224 KEEVKREHRESEGDPHVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGE 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG NL+A ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA++
Sbjct: 284 MRAPKVVAKGVNLVAARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEV 343

Query: 346 IYKIYH 351
           +  +Y 
Sbjct: 344 LAWVYQ 349


>gi|317403765|gb|EFV84247.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans
           C54]
          Length = 384

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 182/345 (52%), Gaps = 5/345 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTEA S +++E A  EG    SRE   F  +LA  +  ++     IY   S +     +
Sbjct: 8   EKTEAASPRRLEKAREEGQIARSRELGTFM-MLAVGVGAIWAGGGTIYKGLSGVLRNGLA 66

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             QR + D   +V    +    A  +++P  GLL  +   + S L+  I V++   + P+
Sbjct: 67  FDQRVVADPGVMVEQAVNGFGHALMVILPIFGLLAVIAV-LSSVLLGGI-VISGKPLSPN 124

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F ++SL  G+KR++S   +V  +K+  K +LVG +    L   +  ML  +   P + L 
Sbjct: 125 FSKLSLFAGLKRMFSAQTVVELIKALAKAMLVGGVAVWILWRYHDDMLGLMHVAPSAALT 184

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A   V      I+  +  + +LD+ W       KL+MSK++++ E K+S G+P  K R 
Sbjct: 185 KALSLVAMCCAFIVASLLVIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDPHTKARI 244

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R   R +MM    +A +++TNPTHYA+AL+Y + +N AP ++AKG  LIA K+R++
Sbjct: 245 RQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYEEDKNGAPRVLAKGTGLIAAKIREL 304

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++ 
Sbjct: 305 AAEHRIPTLEAPPLARALHQHVELGQEIPAELYTAVAEVLAWVFQ 349


>gi|52842013|ref|YP_095812.1| flagellar biosynthesis protein FlhB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629124|gb|AAU27865.1| flagellar biosynthetic protein FlhB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 383

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 191/358 (53%), Gaps = 15/358 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++   F++ +     +L F   G +    
Sbjct: 2   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 53

Query: 61  DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L + +AS  Q+  +    I+         L  L+ S    V+P LL+  +  + + L+ 
Sbjct: 54  QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 113

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              V +   ++P F R+++ +G+KR+ S+   V  +K+F+K +LV +   + L      +
Sbjct: 114 GGWVFSGQSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 173

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+   A     +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE 
Sbjct: 174 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 233

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G P +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++A
Sbjct: 234 KETEGKPEVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 293

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG+NL+A ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+ 
Sbjct: 294 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 351


>gi|148359330|ref|YP_001250537.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby]
 gi|296107377|ref|YP_003619077.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281103|gb|ABQ55191.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby]
 gi|295649278|gb|ADG25125.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99
           Alcoy]
          Length = 382

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 191/358 (53%), Gaps = 15/358 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++   F++ +     +L F   G +    
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52

Query: 61  DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L + +AS  Q+  +    I+         L  L+ S    V+P LL+  +  + + L+ 
Sbjct: 53  QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              V +   ++P F R+++ +G+KR+ S+   V  +K+F+K +LV +   + L      +
Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 172

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+   A     +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE 
Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G P +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++A
Sbjct: 233 KETEGKPEVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG+NL+A ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+ 
Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350


>gi|311068160|ref|YP_003973083.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942]
 gi|310868677|gb|ADP32152.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942]
          Length = 360

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 196/351 (55%), Gaps = 13/351 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65
            KTE  + KK +D   +G   +++ A + +++ + L+  L F + G Y    + S L   
Sbjct: 13  EKTEKATPKKRQDTRKKGQ--VAKSADVNTAV-SLLVVFLSFIAIGPYMRDRLLSFLETF 69

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
              +   KL  +S++  L   L      ++ P +L+ ++ G+ S  +Q   + +   +KP
Sbjct: 70  YTESLTMKLS-MSNVHTLFIDLLKDTGIILAPIMLVALIAGVISNYMQVGILFSAEVIKP 128

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             K++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L      P  +L
Sbjct: 129 DLKKLSPLKGFKRIYSMRAIVELLKSILKIAVVGFAAFLVLWTHYGEILRLPLLTPEEVL 188

Query: 186 YHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPII 242
               F  +  L M L     L VL  + + Y ++ Y K ++MSKQ+IKDE K+S G+PII
Sbjct: 189 S---FVSKLTLWMGLSGAGALMVLAGLDYLYQKFDYEKNIRMSKQDIKDEYKKSEGDPII 245

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP ++AKG + +A K
Sbjct: 246 KSKIKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEHKMDAPYIIAKGVDHLALK 305

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 306 IKQIAKEHDVMTVENRPLARALYDQVEIDQAVPEEFFKVIAEILAYVYKTK 356


>gi|329897646|ref|ZP_08272170.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC3088]
 gi|328921095|gb|EGG28504.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC3088]
          Length = 383

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 190/366 (51%), Gaps = 31/366 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE P++K+I+ + ++G    S+E S+ ++++    ++  F    I  ++ 
Sbjct: 1   MAENDSTQEKTEEPTNKRIQKSRDDGQVARSQELSIAATVITVAGFMYLFGGAMIIKISE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                        + D  H VF ++ L+    + ++  LL+    G  ++++  +    L
Sbjct: 61  QFAAAF-------VFDPKH-VFDVSGLTSRVGKGLMDALLVVAPLGAAAFVVSFLVSGVL 112

Query: 121 NHVKPSFKRVSLR-------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
                S+K ++ +        G+KR++ +  + +F K+  K +LVG + T  L +NY   
Sbjct: 113 GGYNFSWKAIAPKASKLNPLSGLKRMFGMKVVFDFFKTIGKFLLVGGL-TYLLVDNYVGQ 171

Query: 174 LDFIS--------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           L F S        A   SI+  +F      LI+I +       +D  +   ++  KLKM+
Sbjct: 172 LMFTSLMNFEGGLALGGSIIVFSFLVATLALIIIAM-------IDAPYQLQEYNKKLKMT 224

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K + G P +K R +   R     +M+EA + A ++ITNP H+A+AL Y  T 
Sbjct: 225 KQEVKEEAKDTDGRPEVKQRIRQKQRELASMRMLEAIADADVVITNPEHFAVALAYDPTG 284

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           +  P LVAKG + IA+K+R+ A E  +P+F  P LARSLF    +N  IP   Y+AVAQ+
Sbjct: 285 DLPPKLVAKGSDFIAEKIRERAKEEGVPLFTSPILARSLFFTTDLNGYIPEPLYEAVAQV 344

Query: 346 IYKIYH 351
           I  I++
Sbjct: 345 IAFIFN 350


>gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
           743B]
 gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           cellulovorans 743B]
 gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
           743B]
          Length = 607

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 194/346 (56%), Gaps = 2/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D K+E  +SKK+ DA  +G    S++  L  + LA    L    +  I  +++ +    +
Sbjct: 262 DEKSEEATSKKLADAKKKGQIARSKDLGLGITFLATAFGLAALGNMFIDRMSNIIMKFFS 321

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                  ED   ++ +L    +  + L++P   + M+ G+ + L Q   +     +KP  
Sbjct: 322 VTNGNLTED--GLIEILKIAMIDGAILILPIAFIVMVTGVAASLAQTGFMNTSEPLKPDL 379

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+++  +G KRI+S+ ++V+ +K+   II+VG +    ++++   ++  I+    +ILY 
Sbjct: 380 KKINPVDGFKRIFSMRSVVDLLKNVTIIIIVGYVGYKLVSDDIVDIMLLINLKEGAILYE 439

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  +L+ I L ++ + + D  +   ++  +++M+KQE+K+E KQ  G+P IK ++K
Sbjct: 440 LKKIVTSILLKIALILSVIGIADYMYQKKKFLKEMRMTKQEVKEEYKQMEGDPEIKAKRK 499

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +   R +MM A   AT+++TNPTH+A+AL+Y +    AP++VAKG + IA K+++IA
Sbjct: 500 QKMKELSRARMMAAVPNATVVVTNPTHFAVALKYEEGSAGAPMVVAKGTDNIAFKIKEIA 559

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E+ +PI E   LAR ++K+V I+  IP   Y+AVA+++  +   K
Sbjct: 560 KENKVPIIENKPLARLIYKEVDIDEEIPIDMYQAVAEILAMVLKMK 605


>gi|83647843|ref|YP_436278.1| flagellar biosynthesis protein FlhB [Hahella chejuensis KCTC 2396]
 gi|83635886|gb|ABC31853.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis
           KCTC 2396]
          Length = 378

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 189/359 (52%), Gaps = 17/359 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END    KTE P+ +KIE A  EG  P SRE +  + +LA  + LL F +    ++  
Sbjct: 1   MAENDTSQEKTEEPTPRKIEKAREEGQIPRSRELNTTAVLLAGAVGLLVFGT----TIGK 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP---- 116
            L  +  ++     E++      + HL ++A  + I  L+ FM+  + + L+  I     
Sbjct: 57  ALEGVFRASFTLTREEVFDAHQPMIHLGMAALDMAI-SLVPFMLVLLVASLLGPIALGGW 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +++     P F R++  EG+KR++S+ +L+   K   K ++VG +  I L  +   +L  
Sbjct: 116 MMSAKAAAPKFSRINPLEGLKRMFSLKSLMELFKGVAKTLVVGGVALIILNYSIPDLLAM 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            S +    + HA      +L    LF+A+    + ++D+ +  +     L+M+ QEIKDE
Sbjct: 176 GSEDTMVSMAHAC----SLLAWSFLFLASSMILIALVDVPFQIYDNQKNLRMTMQEIKDE 231

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + G P +K R + +     R +M++   +A ++ITNPTHY++AL+Y   +  AP+++
Sbjct: 232 YKDTEGKPEVKRRVREVQYEMSRRRMLQDVPKADVVITNPTHYSVALKYDAKKMAAPIVL 291

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           AKG + +A K+R+IA  H I +   P L RS++    +   IP   Y AVAQ++  ++ 
Sbjct: 292 AKGADHMAMKIREIANAHKIELVSAPPLTRSIYHHTEVGEEIPSGLYLAVAQVLAYVFQ 350


>gi|317492437|ref|ZP_07950866.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919776|gb|EFV41106.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 383

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 12/358 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE P+S K+E A  +G  P SRE +    + A +  LL     G   +  
Sbjct: 1   MSE-DSDLEKTEDPTSHKLEKAREKGQVPRSRELTSMLMLAAGISILLI----GGEHLAR 55

Query: 61  DLHVLLASATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  +++   Q     + +   ++  L +L   A   ++P LL  M+ G  + ++     
Sbjct: 56  QLAAMISQGLQFDQLLISNDKQMLRQLGNLLQQAVAALMPVLLGLMLVGWAAPMLIGGFF 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            N   +K    ++SL  G+KR++S   L   +K  +K+ILV  +    L   +  ML  I
Sbjct: 116 FNPGSIKFDLSKMSLLSGLKRLFSSQALAELLKGVLKVILVSWVAGWFLWHYWGQMLALI 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQ 235
           + +P   +  A   +    ++I+L +  +   D+   Y  W   +KLKM+KQEIKDE K+
Sbjct: 176 AESPLDAMGDALHLIGMCGLLIVLGLVPMVAFDV--FYQIWSNLNKLKMTKQEIKDEFKE 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG
Sbjct: 234 QEGDPHVKGRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
              IA +++++  +H IP  E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 294 AGEIALRIKELGNQHRIPQLEAPPLARALYRHSEIGHHIPATLYAAVAEVLAWVYQLK 351


>gi|258514018|ref|YP_003190240.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777723|gb|ACV61617.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 354

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 204/359 (56%), Gaps = 21/359 (5%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF--SPGIYSVTSDL 62
                KTE  + +K+  A  +G   +++ + L +++L   + LLF+      + S+    
Sbjct: 3   QGGQEKTEKATPRKLLQARRKGQ--VAKSSDLNAAVLMLAVVLLFYSIKQQQLSSMYKYF 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              LA+ TQ +   +S ++ L+   S+   +L+ P L++ ++  +    +Q   V +   
Sbjct: 61  SWYLANFTQYRESQVS-LMQLMVSFSIYYIKLMAPVLIVVVIVALLINFMQVGLVFSSES 119

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP  KR +  EG KRI+++ +LV   K+  K++++G I    ++  +  +L    A P 
Sbjct: 120 IKPQLKRANPIEGFKRIFTVRSLVELAKNIFKLLVIGGITYNLISGRFNELLLIFYATPA 179

Query: 183 SILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            I    F TV   ++ IL +       + +LD  +  +++   ++MSKQ+IKDE KQ+ G
Sbjct: 180 MI----FQTVSGFILRILGWGGIVYFAMALLDYLYQRYEFQKSMRMSKQDIKDEYKQTEG 235

Query: 239 NPIIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +P++K++    Q+ ++ SRIR +M     RAT+++TNPTH+A+ALRY + + D P++ AK
Sbjct: 236 DPLLKSKLREMQRKMSLSRIREEM----PRATVVVTNPTHFAVALRYSEGDADVPLVTAK 291

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A +MR++A E+N+P+ E+  LAR L+ +V + + IP   Y++VA+++  +Y KK
Sbjct: 292 GADYLALRMREMAKEYNVPVIEQRELARLLYDRVEVGTEIPYELYQSVAEILAMVYKKK 350


>gi|54297699|ref|YP_124068.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str.
           Paris]
 gi|53751484|emb|CAH12902.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str.
           Paris]
          Length = 382

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 190/358 (53%), Gaps = 15/358 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++   F++ +     +L F   G +    
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52

Query: 61  DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L + +AS  Q+  +    I+         L  L+ S    V+P LL+  +  + + L+ 
Sbjct: 53  QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              V +   ++P F R+++ +G KR+ S+   V  +K+F+K +LV +   + L      +
Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 172

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+   A     +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE 
Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G P +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++A
Sbjct: 233 KETEGKPEVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG+NL+A ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+ 
Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350


>gi|169827139|ref|YP_001697297.1| flagellar biosynthesis protein FlhB [Lysinibacillus sphaericus
           C3-41]
 gi|168991627|gb|ACA39167.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
          Length = 362

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 193/354 (54%), Gaps = 18/354 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +DA  +G    S++ +  S+I+  ++++  FF  G  S+  +L      
Sbjct: 15  EKTEKATPKKRQDARKKGQVVKSQDVT--SAIVMLMVFIFLFFFAG--SLRDELLAFFRQ 70

Query: 69  ATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                +      I  ++ L     +  + +++P + + ++  +    +Q   +  L  +K
Sbjct: 71  TFIHNIRIETLTIDSVMHLFIDTLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMK 130

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
              K++   +G+KRI+S+  +V  +KS +KI  +G++ TI +  N   +L     +P   
Sbjct: 131 FDLKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSP--- 187

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQW-YSK-LKMSKQEIKDEIKQSYGN 239
            +    TV K L+ I+   A+L +L +    W Y ++ Y K LKMSKQ+IKDE K S G+
Sbjct: 188 -WITLITVGK-LVGIMGIAASLVLLCVSILDWLYQKFDYEKNLKMSKQDIKDEYKNSEGD 245

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK++ K   R     +MM     A ++ITNPTHYA+AL+Y +   DAP ++AKG + I
Sbjct: 246 PLIKSKIKQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEESMDAPRVIAKGTDFI 305

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K++ IA EH++ + E   LAR+++ QV I   +P  F+KAVA+++  +Y  K
Sbjct: 306 AQKIKLIAKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 359


>gi|54294673|ref|YP_127088.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str.
           Lens]
 gi|53754505|emb|CAH15989.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str.
           Lens]
          Length = 382

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 190/358 (53%), Gaps = 15/358 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++   F++ +     +L F   G +    
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52

Query: 61  DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L + +AS  Q+  +    I+         L  L+ S    V+P LL+  +  + + L+ 
Sbjct: 53  QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              V +   ++P F R+++ +G KR+ S+   V  +K+F+K +LV +   + L      +
Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLL 172

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+   A     +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE 
Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G P +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++A
Sbjct: 233 KETEGKPEVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG+NL+A ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+ 
Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350


>gi|329904716|ref|ZP_08273917.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547860|gb|EGF32618.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 379

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 182/361 (50%), Gaps = 33/361 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY----SVTSDLHV 64
            KTE  S ++I+ A   G+ P SRE      +  CL+  L     G+Y    ++   L  
Sbjct: 8   EKTEPASQQRIDKARENGDVPRSRE------LATCLV--LLAAGGGLYISGANMLRQLKA 59

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIP-----GLLLFMMFG----IGSYLIQRI 115
            LAS              LL+ L      L++      G+L+ +       IG +L    
Sbjct: 60  ALASGLTFDRGQAFDFSLLLSRLGSHLGDLLLAFAPLAGILILVALASPLLIGGWL---- 115

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +   + P+F R++L  G+ +I S+N LV   K+  K ++VG+I  + +      +L 
Sbjct: 116 --FSAQALAPNFGRMNLFSGLLKIVSLNALVELGKAVAKAVIVGSIAYLVMRSEIDEVLG 173

Query: 176 FISANPHSILYHA---FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            +     +   H     F+   +++M L+ IA +      WSY +   K+ M++QE++ E
Sbjct: 174 LMVEPAEAGSMHMAKLLFSTYMLIVMGLVLIAAVDAPYQMWSYAK---KMMMTRQEVRQE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K+S GNP IK + ++  R   R +MM     A +++TNPTHYA+AL+Y   +  AP +V
Sbjct: 231 AKESEGNPEIKAKIRAQQREMARRRMMSEVPTADVVVTNPTHYAVALKYTDGKMGAPQVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A ++R++A  +N+P+ E P LAR+LFK V +  AIP   Y AVA+++  ++  
Sbjct: 291 AKGADAVAARIRELAAANNVPLLEAPPLARALFKHVELGDAIPETLYTAVAEVLAYVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|157371217|ref|YP_001479206.1| flagellar biosynthesis protein FlhB [Serratia proteamaculans 568]
 gi|157322981|gb|ABV42078.1| flagellar biosynthetic protein FlhB [Serratia proteamaculans 568]
          Length = 398

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 183/351 (52%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+EAP+  ++E A  +G  P SRE    +S+L  +  L   +  G  +++  L 
Sbjct: 18  EDSDLEKSEAPTPHRVEKAREDGQIPRSRE---LTSVLMLVAGLSIIWVAG-SNMSQQLA 73

Query: 64  VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++L          +S+   +L  L +    A   ++P +    +  I + ++    +L+ 
Sbjct: 74  MMLTQGLNFDHSMVSNDKQMLRQLGMLLRQAVWALLPVMAGLTLVAITAPMLLGGLLLSG 133

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR++   G+KRI+S   L   +K  +K  LVG +  + L  N+  ML  ++  
Sbjct: 134 KSLKFDLKRMNPLTGLKRIFSSQVLAELLKGILKATLVGWVTGLYLWHNWAAMLHLVTQQ 193

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L +A   +    ++++L +  +   D+ +     + KLKM+KQ+I+DE K   G+P
Sbjct: 194 PLDALANALQMIIFCGLLVVLALTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDP 253

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG   IA
Sbjct: 254 HVKGRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDKKMSAPKVLAKGAGEIA 313

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++  +H IP+ E P LAR+L++   I   IP   Y AVA+++  +Y 
Sbjct: 314 LRIRELGMQHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQ 364


>gi|320354335|ref|YP_004195674.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM
           2032]
 gi|320122837|gb|ADW18383.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM
           2032]
          Length = 355

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 197/355 (55%), Gaps = 5/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  A   +TE+PS+K+  D   +G    SRE    +     L++ +FF +P  +  T 
Sbjct: 1   MAEEPASGERTESPSAKRRADFRKKGQVAQSREVQTAALFTLLLLFWVFF-APIFWDGTK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  +L   +       S ++ L   L +S + ++ P  L+ ++ G  +  +Q   +   
Sbjct: 60  EMVAVLWRNSGDYAITTSSLMQLGYFLGVSLAMILAPLFLVALLVGFLATFLQIGWLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYFTMLDFIS 178
             + P   ++   +G+ R +S  +LV  +KS +K+ L+G I   T++   +   +L  + 
Sbjct: 120 EPLIPDLTKLDPIKGMGRFFSKRSLVEVIKSLLKVGLIGWIAYKTVAGEMDQALLLTEMP 179

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  +ILY A  T   V+  +   +  L +LD  +   +   K+KM+KQE K+E+K++ G
Sbjct: 180 LD-DTILYLAK-TSALVMAKVAAIMIVLAILDYAFVRWEMEEKMKMTKQEQKEEMKETEG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ +SI +   R +MM A   A ++ITNPTH A+A++Y     DAP+++AKGQ L
Sbjct: 238 DPHIKSKIRSIQQQMARRRMMAAVPTADVVITNPTHIAVAIKYEAGTMDAPLVLAKGQEL 297

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A+K+R+IA E++IP+ E P +AR L  +V +  AIP   +KAVA+++  +Y  K
Sbjct: 298 VAEKIREIARENDIPLVENPPVARLLHSKVEVGQAIPEELFKAVAEILAYVYSLK 352


>gi|73539437|ref|YP_299804.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha JMP134]
 gi|72122774|gb|AAZ64960.1| Flagellar biosynthetic protein FlhB [Ralstonia eutropha JMP134]
          Length = 380

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 190/358 (53%), Gaps = 16/358 (4%)

Query: 4   NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
           +D  D  KTE  S +++E A  EG    SRE + F  ++  +I        G++++   +
Sbjct: 2   SDESDLEKTEPASPRRLEKAREEGQVVRSRELATFIMLMTGVI--------GLWTLGGTI 53

Query: 63  HVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
              L +  ++ L        D S ++    ++   +    +P LLLF +  + + L+   
Sbjct: 54  GRSLDTVMRQSLRFEPATAFDTSRMLSRFANVIWESLLAFMPLLLLFGVAAVAAPLLMGG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +   + P+F R+S   G+ R++S++++   +K+  K +LVG++    +       + 
Sbjct: 114 WTFSTKALMPNFGRMSPMSGLGRMFSVHSVAELVKAIAKSLLVGSVGAWVVWHRLPDAIA 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            ++A     L H    V +  + ++L +  +  +D+ W + + + KL+MSK+E+K E K+
Sbjct: 174 LMNAPVQEALLHMLDMVLRCCVPVVLSLLLVAAIDVPWQFWEHFKKLRMSKEEVKQEFKE 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P IK R +   R+  R +MM+   +A +++TNPTH+A+ALRY +    AP ++AKG
Sbjct: 234 SEGDPHIKGRIRQQQRAMARRRMMQEVPKADVVVTNPTHFAVALRYEEGRMSAPRVIAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A ++R++A EH IP+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 294 TDEVAARIRELAAEHRIPLMSAPPLARALHRHVDLGQEIPAGLYTAVAEVLAWVYQLK 351


>gi|157692318|ref|YP_001486780.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
 gi|157681076|gb|ABV62220.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
          Length = 362

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/279 (37%), Positives = 163/279 (58%), Gaps = 6/279 (2%)

Query: 78  SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137
           S+I  L   L      L++P L + M+ GI S  +Q   + +   +KP  +++   +G K
Sbjct: 83  SNIHQLFVELLQETGLLLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKLEKLDPIKGFK 142

Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           RIYSI  LV  +KS +KI L+G    I+L  ++  +L          L+   F     LI
Sbjct: 143 RIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLH---FVASMTLI 199

Query: 198 MILLFIATLTVL-DIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
           M L     L VL  + + Y ++ Y K L+MSKQ+IKDE K+S G+P+IK++ K   R   
Sbjct: 200 MGLYAAGALMVLAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIKQRQREMA 259

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
             +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA EH+I  
Sbjct: 260 MRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIAKEHDIMT 319

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E   LAR+L+ QV I+ A+P  ++KA+A+++  +Y  K
Sbjct: 320 VENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358


>gi|78776868|ref|YP_393183.1| flagellar biosynthesis protein FlhB [Sulfurimonas denitrificans DSM
           1251]
 gi|78497408|gb|ABB43948.1| Flagellar biosynthetic protein FlhB [Sulfurimonas denitrificans DSM
           1251]
          Length = 350

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 197/365 (53%), Gaps = 40/365 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVT 59
           +DA   KTE P+SKKIEDA  EGN P S++AS    LF +ILA L+   +  S  I S+ 
Sbjct: 3   DDA--EKTEEPTSKKIEDARKEGNVPKSQDASGVMTLFVAILAFLMLFPYMLS-HILSIF 59

Query: 60  SDLHVLLASATQRKLE-DISHI----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                L+     R L  DI+ +    +FL+  + LS +  +   +     FG        
Sbjct: 60  KYYFSLIGMTIDRALMLDIAIVTIKEIFLII-MPLSIAVAIAGVIAAISQFGF------- 111

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             +     + P  K++   +G+K ++S+  L++ +K     I   +  T+ +   +F + 
Sbjct: 112 --LFTTKSITPDLKKLDPIKGMKNLFSMKKLIDGIK-----ITFKSFTTLGIGFVFFFL- 163

Query: 175 DFISANPHSILYHAFFTVRKVLI---------MILLFIATLTVLDIGWSYHQWYSKLKMS 225
            FI   P   L+   FT + + +         ++LL I    V+DI     Q++  LKMS
Sbjct: 164 -FIMELPTVALFG--FTDQMIWLRDKAIIIAFVMLLIIFIFAVIDIVIVRKQYFDGLKMS 220

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQEIKDE+K   G+P+IK + + I     R +MM A   A ++ITNPTHYA+A++Y + +
Sbjct: 221 KQEIKDEMKNMDGDPLIKGKIRQIQMEASRKRMMSAVPEADVVITNPTHYAVAIKYDEQK 280

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + AP++VAKG + IA++++KIA E+ + I + P LARSL+ +V ++  IP   + AVA++
Sbjct: 281 SHAPIVVAKGMDNIAQQIKKIARENGVHIVQNPPLARSLYAEVELDKPIPSELFGAVAEV 340

Query: 346 IYKIY 350
           +  IY
Sbjct: 341 LAYIY 345


>gi|304396256|ref|ZP_07378138.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB]
 gi|304356625|gb|EFM20990.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB]
          Length = 382

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 191/357 (53%), Gaps = 15/357 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+ ++KTE+P++ ++E A  EG  P SRE    +S+L  L  ++  +  G   +   L 
Sbjct: 2   SDSDEDKTESPTAHRLEKAREEGQIPRSRE---LTSVLMLLAGIMILWMGG-NMMAHRLA 57

Query: 64  VLLASA---TQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            ++A+        + D    +SHI  L+T  +L A   ++ GL+L     I + ++    
Sbjct: 58  AMVATGLRFDHGMVRDDKIIVSHIGSLITQ-ALMALLPLMGGLVLV---AIAAPMLLGGI 113

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   +K   K+++   G KR+++        K  +K ILVG +    +  ++  ML  
Sbjct: 114 VFSGKSIKFDPKKMNPIAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRL 173

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           IS  P + L H    +     +++L +  +   D+ W  +  + KLKMS QEI+DE KQ 
Sbjct: 174 ISEAPVTALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQ 233

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG 
Sbjct: 234 EGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGA 293

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             IA ++R++A EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 294 GEIALRIRELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 350


>gi|88813214|ref|ZP_01128454.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
 gi|88789536|gb|EAR20663.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
          Length = 385

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 188/366 (51%), Gaps = 33/366 (9%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            E+   + KTEAP++K+  +A  +G  P SRE +   ++L+    LL F   G Y   S 
Sbjct: 3   EEHSNGEEKTEAPTAKRRHEAKEQGQVPRSRELTTLLAMLSAAGGLLIF---GNYMTDS- 58

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----- 116
               LA A ++ L      +F        A   ++  ++   ++ +G   +  +      
Sbjct: 59  ----LADALRQGLHVGRDAIF-----DPQAPIRLLREMIAQGLWAVGPLALVLLLVALVA 109

Query: 117 -------VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                    +   + P   ++   +G+KR++ ++ LV   KS  K++LVG + T +L ++
Sbjct: 110 PVALGGWTFSAKALAPKLSKLDPVKGLKRLFGVHGLVELGKSLAKVMLVGAVGTYALWQS 169

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMS 225
               LD   A     L+ A     ++     L +AT  +L    D+ +       KL+M+
Sbjct: 170 ----LDDFQALAAEALFPALQHAARIFNTTFLMLATALILIALVDVPFQLWDHTRKLRMT 225

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+KDE+KQ+ G P +K+R + + +   + +MME   +A +++TNPTH+A+ALRY    
Sbjct: 226 KQELKDELKQTEGKPEVKSRIRQLQQQAAQGRMMEQVPKADVVVTNPTHFAVALRYDPLH 285

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP L+AKG +LIA+++R+IA ++ +P+FE P LAR+L     ++  +P   Y AVAQ+
Sbjct: 286 MRAPRLMAKGTDLIAQRIRRIAEDNGVPLFEAPPLARALHYTTELDQEVPAGLYLAVAQV 345

Query: 346 IYKIYH 351
           +  IY 
Sbjct: 346 LAYIYQ 351


>gi|94312630|ref|YP_585839.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans
           CH34]
 gi|93356482|gb|ABF10570.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans
           CH34]
          Length = 380

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 179/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD--LHVLL 66
            KTE  +++++E A  EG    SRE   F+ ++  +I L  + + G+     D  +H  L
Sbjct: 8   EKTEPATARRLEKAREEGQVVRSRELGTFAMLMTGVIGL--WATGGVLGRKLDAVMHAGL 65

Query: 67  ASA------TQRKLEDISHIVF------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
           A        T R L   + IV+      L   L    + LV P  L   MF   S+    
Sbjct: 66  AFEPATAFDTNRMLSQFAAIVWDALLAFLPLLLMFGVAALVTPLALGGWMFSTKSF---- 121

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                     P F R+S   G+ R++S ++LV   K+  K +LVG +    +       +
Sbjct: 122 ---------SPDFSRMSPISGLGRLFSAHSLVELAKAIAKSLLVGGVGAWMIWRKLPEAI 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             + A     L H    V  V  ++   +  +  LD+ W  + ++ KL+M+K+EIK E+K
Sbjct: 173 ALMDAPIQEALLHMMELVLYVSGVVAGSLILVAALDVPWQLYTFHKKLRMTKEEIKQEMK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P IK R +   R+  R +MM    +A +++TNPTHYA+ALRY +    AP +VAK
Sbjct: 233 ETDGDPHIKARIRQQQRAIARRRMMAEVPKADVVVTNPTHYAVALRYEEGRMGAPRVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A ++R++A EH +P+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GADEVAARIRELAAEHRVPMLSAPPLARALHRHVELGHEIPAGLYTAVAEVLAWVYQLK 351


>gi|302389679|ref|YP_003825500.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani
           DSM 16646]
 gi|302200307|gb|ADL07877.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani
           DSM 16646]
          Length = 357

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 193/364 (53%), Gaps = 36/364 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHV 64
             KTE  + ++ + A   G    SRE +    +LA  + L  F   GIY   +  S L  
Sbjct: 8   QEKTEKATPRRRQKARERGQVFSSRELNSALILLASFVLLKIF---GIYIFENTGSFLRQ 64

Query: 65  LLASATQRK---LEDI-----SHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRI 115
                  R+   + DI     S IVF+L   +  A  +V+ GLL+ F+  G         
Sbjct: 65  FFIENLIRQDLSISDIYGIFYSSIVFVLKSTAPVAVGIVLVGLLVNFLQVGF-------- 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT---ISLTENYFT 172
            V +L  + P   R++  EG KRI+S  +L+  +K+ VKIIL+  I     + + +    
Sbjct: 117 -VFSLEPISPKLDRINPVEGAKRIFSKRSLIELVKALVKIILIIYIFYGGFVEIKDTVAL 175

Query: 173 MLDFISANPHSILYHAFFTVR---KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           MLD   +   S+ Y      R   KV I +L+    L+VLD G+ ++++   L MSK+++
Sbjct: 176 MLDM--SFTESLGYFTSMMFRLGLKVGIALLV----LSVLDYGYQWYEYEKSLMMSKEDV 229

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E+K+  GNP IK+R + + R   R +MM+   +A ++ITNPTH A+AL Y  + + AP
Sbjct: 230 KEELKEVEGNPQIKSRIRQVQRQMSRRRMMQEVKKADVVITNPTHIAIALGYDASVHAAP 289

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V++AKG   IA+K+++IA   +IPI E   LA++LFK V +   IP  FY AVA+++  +
Sbjct: 290 VVLAKGTGAIAEKIKEIAEREDIPIVENKPLAQTLFKSVEVGDIIPEEFYNAVAEILAFV 349

Query: 350 YHKK 353
           Y  K
Sbjct: 350 YSLK 353


>gi|114320141|ref|YP_741824.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226535|gb|ABI56334.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 390

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 186/366 (50%), Gaps = 33/366 (9%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            E++    KTE P+ K+++DA  +G  P SRE +    +L   + +L F   G Y +   
Sbjct: 3   EESENGQEKTEQPTPKRLQDAKKKGQIPRSRELTTTLLMLFAALGMLMF---GGY-MGEG 58

Query: 62  LHVLLASATQRKLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMF-------GIGSYLI 112
           +  LL  + Q   E I          H +L    L++   +  MM         +G +  
Sbjct: 59  IVGLLEWSFQPGREQIFDPKEPIARVHEALGRGLLIVAPFVGLMMLVALIGPVALGGWTF 118

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI--SLTENY 170
              P++      P  ++++  +GIKRI+    L+   K   KI++VG +  +   L ++ 
Sbjct: 119 SAQPMI------PKPEKMNPVKGIKRIFGPKALIELAKGIAKILVVGAVAGVFFYLFQDE 172

Query: 171 FTMLDFI---SANPHSI--LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
              L      SA  H+I   + AFF +   LI+++        +D+ +       KL+M+
Sbjct: 173 LRSLALAPLQSAMAHAIELFFIAFFVLAASLIIVV-------AVDVPYQLWDHQKKLRMT 225

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           +QE+KDE KQ+ G P +K + + + R   + +MME    A +++TNPTHYA+AL+Y Q  
Sbjct: 226 RQEVKDEFKQTEGKPEVKGKIRQLQREAAQRRMMEKVPEADVVVTNPTHYAVALQYDQLR 285

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VA G++ +A ++R+IA EH IP+FE P LAR+L+    I+  IP   Y AVAQ+
Sbjct: 286 MRAPRVVALGKDQVALRIREIAGEHGIPLFEAPPLARALYHTTDIDQEIPAGLYMAVAQV 345

Query: 346 IYKIYH 351
           +  IY 
Sbjct: 346 LAYIYQ 351


>gi|304311113|ref|YP_003810711.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
 gi|301796846|emb|CBL45058.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
          Length = 375

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 186/362 (51%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    KTE  + +K+E A  +G  P SR+    S ++   I +L +    IY    
Sbjct: 1   MADEDG-QEKTEDATPRKLEQAYEKGQTPRSRDLVAVSMLIIGGIGMLLYVEQ-IYRAFV 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI---------GSYL 111
               +  +  + K+ D S ++  L   + +A + ++P   LF    +         G   
Sbjct: 59  TAFEMGFTFDREKIFDDSAMMRALLQAAYAAGKSLLP---LFATLAVVAIAASVASGGLH 115

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
           +   P++        F++++   GIKR++S+ +LV  +KS +K+ LVG    + +   + 
Sbjct: 116 VSSHPLMF------KFEKLNPLSGIKRMFSLQSLVELIKSIMKVSLVGFTAWLVVKAQFA 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             L  I       + H+   V    + + L +A +  +D+ +   Q+  +L+M+KQE+KD
Sbjct: 170 EYLGLIDEPIQQAMLHSISMVAWAFVWLSLSLALVAAIDVPYQNWQFRKQLRMTKQEVKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K S G P IK +Q+  AR      MM    +A ++ITNPTH+A+ALRY  T+  AP L
Sbjct: 230 EYKDSEGKPEIKAKQRQRAREMAFAGMMAEVPKADVVITNPTHFAVALRYDPTKGGAPKL 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG +LIA++++++A  +N+ I   P LARS+F    +   IP   Y AVAQ++  +YH
Sbjct: 290 VAKGADLIAEQIKRVAIANNVVILAAPPLARSIFYHTKLFKEIPSGLYVAVAQVLAYVYH 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|213022149|ref|ZP_03336596.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 336

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 184/335 (54%), Gaps = 7/335 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
            ++R+I  EH +P  E P LAR+L++   I   IP
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIP 333


>gi|307610486|emb|CBX00058.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 130b]
          Length = 425

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 190/358 (53%), Gaps = 15/358 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++   F++ +     +L F   G +    
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKD---FNATV-----ILLFTGLGFFIFGK 52

Query: 61  DLHVLLASATQRKLEDISHIVFL-------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L + +AS  Q+  +    I+         L  L+ S    V+P LL+  +  + + L+ 
Sbjct: 53  QLSLQIASIMQQAFDFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLM 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              V +   ++P F R+++ +G KR+ S+   +  +K+F+K +LV +   + L      +
Sbjct: 113 GGWVFSGQSIQPKFSRLNVLKGFKRMISLKGFIEMLKAFLKFVLVASASILVLRSQVPLL 172

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+   A     +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE 
Sbjct: 173 LELGKAPLEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEY 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G P +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++A
Sbjct: 233 KETEGKPEVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG+NL+A ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+ 
Sbjct: 293 KGKNLVAFQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQ 350


>gi|126653730|ref|ZP_01725648.1| flagellar biosynthesis protein B [Bacillus sp. B14905]
 gi|126589694|gb|EAZ83830.1| flagellar biosynthesis protein B [Bacillus sp. B14905]
          Length = 365

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 189/350 (54%), Gaps = 10/350 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +DA  +G    S++ +    +L   I+L+FF       + +        
Sbjct: 18  EKTEKATPKKRQDARKKGQVIKSQDVTSAIVMLMVFIFLIFFAGSLRDELLAFFRQTFIH 77

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             + +   I  ++ L     +  + +++P + + ++  +    +Q   +  L  +K   K
Sbjct: 78  NIRIETLTIDSVMHLFIETLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFDLK 137

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++   +G+KRI+S+  +V  +KS +KI  +G++ TI +  N   +L     +P    +  
Sbjct: 138 KMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSP----WMT 193

Query: 189 FFTVRKVLIMILLFIATLTVLDIG---WSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIK 243
             TV K L+ I+   A+L +L +    W Y ++ Y K LKMSKQ+IKDE K S G+P+IK
Sbjct: 194 LITVGK-LVGIMGIAASLVLLCVSILDWMYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIK 252

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++ K   R     +MM     A ++ITNPTHYA+AL+Y +   DAP ++AKG + IA+K+
Sbjct: 253 SKIKQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEENMDAPRVIAKGTDFIAQKI 312

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + IA EH++ + E   LAR+++ QV I   +P  F+KAVA+++  +Y  K
Sbjct: 313 KLIAKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 362


>gi|222530120|ref|YP_002574002.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456967|gb|ACM61229.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 366

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 192/350 (54%), Gaps = 13/350 (3%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  I  +         S 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFF-SN 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               LEDIS    LL+ +  ++ ++V+P  +  M   +     Q   ++    +K SF++
Sbjct: 75  LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAVIVEWAQSSFLITGQSLKMSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT------MLDFISANPHS 183
           ++  EG KRI+SIN++V  +KS +K++++G       T  ++T      +L+    N  +
Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIG------YTGYFYTQTFAKKLLEMYEMNVFT 188

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I+  +F +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK
Sbjct: 189 IVRFSFGSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIK 248

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++ +   R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA+K+
Sbjct: 249 SKIREKQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKI 308

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ A +H I I E   LAR+L+    +   IPP  Y+AVA+++  +Y  K
Sbjct: 309 KQEAIKHRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358


>gi|57506049|ref|ZP_00371972.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           RM3195]
 gi|57015657|gb|EAL52448.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           RM3195]
          Length = 356

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 190/363 (52%), Gaps = 42/363 (11%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-------------LFFFSPGI 55
            KTE P+SKKIEDA  EGN P S++A+   +++  +  L             L+ +    
Sbjct: 7   EKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVANLYRYYQNF 66

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
             V  DL ++ A      ++ I  ++ +L  + LS            M+ GI   ++Q  
Sbjct: 67  IGVEFDLRIIQAIM----MKSIFEVLIILAPIVLS-----------IMVAGIIGNVMQFG 111

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +     + P+  +++  +G+K ++S+  L+  +K  +K+ +V TI        +  +L 
Sbjct: 112 FIFTTKPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVSVVFTI-------AFIVLLQ 164

Query: 176 FISANPHSILY----HAFFTVRKVLIMILLFIATLTV---LDIGWSYHQWYSKLKMSKQE 228
           F+   P   LY       +   K LI+  + I    +   LD+     Q++  LKMSKQE
Sbjct: 165 FVKELPKVELYSLAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQE 224

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           IKDE KQ  G+P +K R + +     R +M++  + A ++ITNPTHYA+ALRY  T+ +A
Sbjct: 225 IKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENA 284

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P +VAKG + +A +++++AY+HN+ ++E P LAR L+K   ++  IP   +KAV+++   
Sbjct: 285 PRVVAKGVDFLALRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKF 344

Query: 349 IYH 351
           +Y 
Sbjct: 345 VYQ 347


>gi|194014696|ref|ZP_03053313.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061]
 gi|194013722|gb|EDW23287.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061]
          Length = 362

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/279 (37%), Positives = 163/279 (58%), Gaps = 6/279 (2%)

Query: 78  SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137
           S+I  L   L      L++P L + M+ GI S  +Q   + +   +KP  +++   +G K
Sbjct: 83  SNIHQLFVQLLQETGILLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKLEKLDPIKGFK 142

Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           RIYSI  LV  +KS +KI L+G    I+L  ++  +L          L+   F     LI
Sbjct: 143 RIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLH---FVANMTLI 199

Query: 198 MILLFIATLTVL-DIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
           M L     L +L  + + Y ++ Y K L+MSKQ+IKDE K+S G+P+IK++ K   R   
Sbjct: 200 MGLYAAGALMILAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIKQRQREMA 259

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
             +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA EH+I  
Sbjct: 260 MRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIAKEHDIMT 319

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E   LAR+L+ QV I+ A+P  ++KA+A+++  +Y  K
Sbjct: 320 VENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358


>gi|114570480|ref|YP_757160.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10]
 gi|114340942|gb|ABI66222.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10]
          Length = 363

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 182/346 (52%), Gaps = 1/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +    KTE P+ ++++DA  +G+   S+E   +  + A L  L F F     ++  
Sbjct: 1   MAEGEDDSQKTEEPTQRRLDDARKKGDVAKSQEIPGWFVLAAGLALLSFIFPMMSRALAG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L V         + +   ++ L+  ++     +V   + L  + G   + +Q+  +   
Sbjct: 61  NLEVFFEQPHDFAI-NPGAMMGLMQAVAWQVVAIVGLPIGLLAVAGFAGHYVQQGMLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++  EG KR +    L NF+K   K+ LV     + +      +    + +
Sbjct: 120 EKIQPKLSKLNPIEGFKRNFGPQGLANFLKGVGKMALVAVAAFLVIYPKREILAGLPALD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S+L        ++L+  L   A +  LD  +    +  + +MS++EIKDE+KQS G+P
Sbjct: 180 IGSLLSLVRQGAIELLLAALTVYAVIAGLDYIFQRQSFMKRNRMSRREIKDEMKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ + + + + R + +MM     AT+++TNPTHYA+AL Y+Q E  APV VAKG + +A
Sbjct: 240 LVRAKLRQLRQERSQRRMMTKVPDATVVVTNPTHYAIALHYVQGETPAPVCVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R++A EH++PI E+P LAR+L     ++  IP   ++AVA+++
Sbjct: 300 LRIRELAEEHSVPIVEDPPLARALHATADLDEEIPTEHFQAVAKVV 345


>gi|270262410|ref|ZP_06190681.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13]
 gi|270043094|gb|EFA16187.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13]
          Length = 398

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 182/351 (51%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+EAP++ ++E A  +G  P SRE    +S+L  +  L   +  G   +   L 
Sbjct: 18  EDSDLEKSEAPTAHRVEKAREDGQIPRSRE---LTSVLMLVAGLSIIWVAG-GGMAQQLA 73

Query: 64  VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L          +S+   +L  L +    A   ++P +   ++  I + ++    +L+ 
Sbjct: 74  AMLTQGLNFDHTMVSNDKQMLRQLGMLLRQAVWALLPIMAGLVLVAITAPMLLGGLLLSG 133

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR++   G+KR++S   L   +K  +K  LVG I  + L  ++  ML  ++  
Sbjct: 134 KSLKFDVKRMNPLSGLKRMFSSQVLAELLKGLLKATLVGWITGLYLWHHWAEMLHLVTQQ 193

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L +A   +    ++++L +  +   D+ +     + KLKM+KQ+I+DE K   G+P
Sbjct: 194 PLDALGNALRMIIFCGLLVVLGLTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDP 253

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG   IA
Sbjct: 254 HVKGRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDQKMSAPKVLAKGAGEIA 313

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y 
Sbjct: 314 LRIRELGTEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQ 364


>gi|218288313|ref|ZP_03492612.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258511391|ref|YP_003184825.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218241672|gb|EED08845.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257478117|gb|ACV58436.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 361

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 188/352 (53%), Gaps = 9/352 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-FFSPGIYSVTSDLHV 64
           A   +TE  + ++ ++A  EG   ++R   L S++    + +      P ++    +L  
Sbjct: 10  AAGERTERATPRRRQEARKEGR--VARSPELTSAVAFAAVLVALRILGPAVWGEWENLIQ 67

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                +  K   +  +  L+    ++A+R+++P   +  + G+ + ++Q  P+     + 
Sbjct: 68  RDLGGSALKSWTVEGVRALMATQVMAAARIMLPIAAVAAVIGLAAAVMQVRPLFVPQLLL 127

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS- 183
           P F+R+S   G +RI S+   +  +KS +K+  V  +   SL      M++  +A   + 
Sbjct: 128 PDFQRISPATGWRRIASLQGALEALKSLLKLAAVVGVAYTSLASLAHQMINLSAAELDAV 187

Query: 184 --ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             IL  A F +    I +   +  +  +D  +  +     L+MSKQE+KDE+K++ GNP+
Sbjct: 188 PGILGRAVFNL---AIRVACAMVVIAAIDYVYQRYSLERSLRMSKQELKDELKETEGNPL 244

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K+  +  AR     +MM+  ++A ++ITNPTHYA+AL Y     +AP +VAKG + +A+
Sbjct: 245 VKSAVRRRARQIASRRMMQNVAKADVVITNPTHYAVALAYQSDTMNAPQVVAKGADFVAQ 304

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++R+ A EH++P+ E P LA++L++ V I   IPP  Y+AVA+++  +Y  +
Sbjct: 305 EIRRRAEEHDVPLVENPPLAQALYRTVDIGQEIPPDLYQAVAEVLAYVYRMR 356


>gi|78044903|ref|YP_359855.1| flagellar biosynthetic protein FlhB [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997018|gb|ABB15917.1| flagellar biosynthetic protein FlhB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 353

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 187/357 (52%), Gaps = 16/357 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIY---- 56
           ++  D +TEAP+ +++ +A   G    S+E   A +F      L+ L  +F    Y    
Sbjct: 3   DEQRDQRTEAPTPRRLAEARRRGQVFKSQELNFAVMFLIFFLLLLVLGGYFYQQFYLLSR 62

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           +V  ++ + L  +  R L        LL +   S  ++V+P LLL M+ GI   L+Q   
Sbjct: 63  NVFRNMFIELTPSAVRGL--------LLYYFGWS-FKIVLPFLLLGMLAGIALNLVQVGF 113

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +     +KPS++R++   G  RI+S  N V  +K+F+K   +  +I + +  N   +   
Sbjct: 114 IFTTEPLKPSWERINPLSGFSRIFSRRNWVELLKNFLKFGFLALVIYLRIKSNLPLIFQK 173

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           I   P       F  ++K+ +  LL +     +D  +   ++Y  LKM+KQE+K+E +Q+
Sbjct: 174 IGQAPAEYFNGYFSLIKKIALDTLLVLFLFGAVDYWYQRREYYQSLKMTKQELKEEYRQT 233

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P+IK R +   R    +++     +AT+++TNP H A+AL+Y + +  AP +VAKG 
Sbjct: 234 EGDPLIKARLRERQRQIALNQIAREVPQATVVVTNPVHIAVALKYERGKMAAPKVVAKGA 293

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +A+K+++IA  HN+ I E   +AR L+K   +   IP   Y AVA++I  +Y KK
Sbjct: 294 GFLAEKIKEIARAHNVEIVENVEVARFLYKNCEVGEEIPEELYNAVAEIIAWVYRKK 350


>gi|58039957|ref|YP_191921.1| flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H]
 gi|58002371|gb|AAW61265.1| Flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H]
          Length = 358

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 177/349 (50%), Gaps = 8/349 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D+KTEAPSS++++ A  +G   +SREA  F ++L     +       +      + VL+A
Sbjct: 5   DDKTEAPSSQRLQKAREDGQIVMSREAMNFVALLGGFAGIFMVLPYLVMDFVHVMQVLMA 64

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +A    +     ++    H   +  +L +P      +  +G   +Q   +++   + P F
Sbjct: 65  NAGTVPMAQ-GGLLNSTDHAIEAGLKLAVPMAATVAVLCLGGGFLQTGFLIHPESLLPKF 123

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDFISANPHSI 184
           +R+S   G KRI     L +  K+  K  +   +   I+     +   M+         +
Sbjct: 124 ERISPLAGFKRIAGGGTLPDTFKALAKFAIFAVVLWNISKGAIPSAPRMVGLEPGPLLKM 183

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +    F     +I+  L IA     DI W   +  SKLKMS++++KDE K + G+P +K 
Sbjct: 184 MTDLGFRAASAMILAQLVIAGF---DIFWMRFRHISKLKMSREDLKDEYKNTEGDPHVKG 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           RQK++     R +MM A   AT+++TNPTHYA+AL Y +    AP +VAKG + +A ++R
Sbjct: 241 RQKALRAKAARQRMMAAVKTATVVVTNPTHYAVALVYERGGGGAPRIVAKGMDDVAARIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA ++ IPI   P LAR+LF  +P++S IP   +K VA +I  ++  K
Sbjct: 301 DIAQDNRIPIVANPPLARALF-TLPLDSEIPAEHFKVVAAIIAYVWKLK 348


>gi|28869179|ref|NP_791798.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967544|ref|ZP_03395692.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato T1]
 gi|301382881|ref|ZP_07231299.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061091|ref|ZP_07252632.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tomato K40]
 gi|302131293|ref|ZP_07257283.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852419|gb|AAO55493.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927845|gb|EEB61392.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato T1]
 gi|331016989|gb|EGH97045.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 378

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  EG    S+E +    +L     LL F + GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMFGA-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL     + ++  + D S++   L    L A  +++P L+  +   +   ++    + + 
Sbjct: 60  DLMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L++    ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|330961236|gb|EGH61496.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 378

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 186/357 (52%), Gaps = 13/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGSGGLLIFGS-DIAEMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP---GLLLFMMFG---IGSYLIQR 114
            L     + T+  L D S++   L    L A  +V+P    +LL  + G   +G +L   
Sbjct: 60  ALMRDNFTITRETLMDQSYMGKALLSSGLHALVVVLPFLIAMLLAALVGPILLGGWLFTA 119

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P++      P F R++   G+KR+++ + LV  +KS  K +++  +    L      ++
Sbjct: 120 KPLM------PKFSRMNPAAGLKRMFAPSALVELLKSLGKFLIILAVALAVLNSERKDLI 173

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                     + H+   V      +   +A +  +D+ +  +Q + KL M+KQE++DE K
Sbjct: 174 AIAHEPLEQAMIHSLIVVGWSSFWMACGLAFIAAVDVPFMLYQAHKKLLMTKQEVRDEHK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            S GNP +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AK
Sbjct: 234 NSDGNPEVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G +L+A K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 294 GSDLVALKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|160902843|ref|YP_001568424.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95]
 gi|160360487|gb|ABX32101.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95]
          Length = 363

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 189/348 (54%), Gaps = 9/348 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE P+ +++E A  EGN P S E ++  S L+  ++L   F P +  +    +  
Sbjct: 18  ADPDKTEDPTPRRLEKAREEGNIPQSNEFNMAVSFLSISLFLWIIFEPLLNDIFKVFYDY 77

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL---IQRIPVLNLNH 122
           L+        D      LL +   +   L I  +L F++  + S L   IQ   +     
Sbjct: 78  LSLDLDYSPTD------LLGYEITAHMNLYIKLILFFVVAVVVSTLLGMIQTKFLFTFKS 131

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K    +++  +G KR++S+ ++V  +K+ +K+ ++G +    +  N+F +L        
Sbjct: 132 LKLDLSKINPIKGFKRLFSLRSVVELIKALLKLTILGLLTYNIIKSNWFKILSLAGEETG 191

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 F  V  +L  + + +  L++ D  +  +++  +LKMSK E+K E K+  GNP I
Sbjct: 192 FSFNVIFDLVINILFQLGIVLLLLSLFDFWYQRYEYKKELKMSKYEVKQERKEIEGNPEI 251

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K RQ+ + R+  R +MM+    A ++ITNPTHYA+A+ Y   E  AP++VAKG++ +A K
Sbjct: 252 KQRQRELMRNLARSRMMQKVPEADVVITNPTHYAVAIEYKAEEMQAPIVVAKGKDEVAFK 311

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +R+IA++H IPI E P+LAR ++++V +N  IP   Y  VA+++  +Y
Sbjct: 312 IREIAFKHGIPILERPALAREIYEKVELNEEIPEDLYTLVAEVLAYVY 359


>gi|315281330|ref|ZP_07869978.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120]
 gi|313615028|gb|EFR88524.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120]
          Length = 348

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F L        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLANMESYSLFYLMEFG----KVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  LV  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|195953033|ref|YP_002121323.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1]
 gi|195932645|gb|ACG57345.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1]
          Length = 353

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 199/357 (55%), Gaps = 19/357 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-----LFFFSPGIYSVTS 60
           A +NKTE  +  +     +EGN   S+E      +++ L+ L     LFF    I+ + S
Sbjct: 2   ASENKTEKATPYRRGKLKSEGNVAKSQE------VVSALLMLVSTGALFFIGYKIFILFS 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRL---VIPGLLLFMMFGIGSYLIQRIP 116
           DL +L  S    +++D S      T  L LS  +L   + P  +L ++  +  Y++Q   
Sbjct: 56  DL-ILDGSL---RIDDPSFTPSDATKFLGLSFKKLLSDITPLFILAVLIVVFGYILQFGF 111

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +     ++P+F +++  +G+K ++S+N L   +K+ +K++L+       L  ++ T++  
Sbjct: 112 IFTFKPLEPNFSKLNPVDGLKNLFSLNALFELVKNSLKVMLLLIASFFILYFSFHTLVFS 171

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              +P   L      + K+LI I +    L  LD  +    +  ++KMSKQE+KDE KQ 
Sbjct: 172 SYMSPSKGLSEIARLIFKLLISIGIIGLMLAGLDFAYKKFDYEKRIKMSKQEVKDEFKQF 231

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GN  +K + +       R +MM+   +A+++ITNPTH+A+ALRYI  ++ AP++VAKGQ
Sbjct: 232 EGNIEVKAKIRRRMMELSRSRMMQEVPKASVVITNPTHFAVALRYIPKQDRAPIVVAKGQ 291

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +AKK+ +IA  +++P+  +P LAR+L+K V I   IPP FYKAVA++I  I  +K
Sbjct: 292 DYMAKKIIEIAELNDVPVVRKPELARALYKAVDIEEEIPPEFYKAVAEIIAYIVKRK 348


>gi|218689877|ref|YP_002398089.1| flagellar biosynthesis protein FlhB [Escherichia coli ED1a]
 gi|218427441|emb|CAR08339.2| flagellar export pore protein [Escherichia coli ED1a]
          Length = 382

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52
           +D  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L    S
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61

Query: 53  PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            G++   S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F   S
Sbjct: 62  AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        ++P F +++   GIKRI+S       +K+ +K ILVG++    L  +
Sbjct: 120 -------------LQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHH 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I
Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP
Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  +
Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346

Query: 350 YHKK 353
           +  K
Sbjct: 347 WQLK 350


>gi|107024383|ref|YP_622710.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia AU
           1054]
 gi|116688291|ref|YP_833914.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
           HI2424]
 gi|105894572|gb|ABF77737.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia AU
           1054]
 gi|116646380|gb|ABK07021.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
           HI2424]
          Length = 399

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           +KTEA + ++ E A  EG    SRE + F+ + A          P          G ++ 
Sbjct: 8   DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    LE  + ++ LL    ++A         L     +G +LI +
Sbjct: 68  DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 118

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|206558545|ref|YP_002229305.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
           J2315]
 gi|198034582|emb|CAR50448.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
           J2315]
          Length = 399

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           +KTEA + ++ E A  EG    SRE + F+ + A          P          G ++ 
Sbjct: 8   DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    LE  + ++ LL    ++A         L     +G +LI +
Sbjct: 68  DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 118

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|254246770|ref|ZP_04940091.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
 gi|124871546|gb|EAY63262.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
          Length = 414

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           +KTEA + ++ E A  EG    SRE + F+ + A          P          G ++ 
Sbjct: 23  DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 82

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    LE  + ++ LL    ++A         L     +G +LI +
Sbjct: 83  DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 133

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 134 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 187

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 188 GLATQPLGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 247

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 248 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 307

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 308 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366


>gi|320325130|gb|EFW81199.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329389|gb|EFW85382.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 378

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++  +   
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|290893976|ref|ZP_06556951.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-071]
 gi|290556422|gb|EFD89961.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-071]
          Length = 348

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F L        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +KS + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKSLLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|218699549|ref|YP_002407178.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI39]
 gi|218369535|emb|CAR17304.1| flagellar export pore protein [Escherichia coli IAI39]
          Length = 382

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 196/367 (53%), Gaps = 35/367 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+        
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 56  ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
                    +S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F 
Sbjct: 59  MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFS 116

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
             S             ++P F +++   GIKRI+S       +K+ +K ILVG++    L
Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFL 163

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+
Sbjct: 164 WHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSR 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + + 
Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMLRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKM 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++
Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343

Query: 347 YKIYHKK 353
             ++  K
Sbjct: 344 AWVWQLK 350


>gi|312621587|ref|YP_004023200.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202054|gb|ADQ45381.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 366

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 187/344 (54%), Gaps = 1/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  I  +         S 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFF-SN 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               LEDIS    LL+ +  ++ ++V+P  +  M         Q   ++    +K SF++
Sbjct: 75  LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAAIVEWAQSSFLITGQSLKMSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG KRI+SIN++V  +KS +K++++G             +L+    N  +I+  +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYCYTQTFAKKLLEMYEMNVFTIVRFSF 194

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ +  
Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA+K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           H I I E   LAR+L+    +   IPP  Y+AVA+++  +Y  K
Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358


>gi|323703184|ref|ZP_08114837.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531843|gb|EGB21729.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans
           DSM 574]
          Length = 354

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 191/349 (54%), Gaps = 2/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           +    KTE  + +++++A  +G  P S + +    +LA  I+ L      I         
Sbjct: 3   EGSQEKTEQATPRRLQEARRKGQVPKSADLNGALLLLAAGIFALMAKDSLISHTQRAFFG 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              +   R+ +D S +V  L   +++     +P  L+ M+  +G+ + Q   +     + 
Sbjct: 63  YFNNLVVRRPQD-SQLVEYLIDFTVNIFASFMPFFLILMVVAVGANMAQVGFLFAPEVIL 121

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  + ++   G+KRI+S  +L   +KS +K+ILVG +I  ++   +  +L    + P ++
Sbjct: 122 PKLEHLNPINGLKRIFSGRSLFELVKSILKVILVGWVIYAAVRGEFANLLAIFQSPPQTM 181

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L        KV+I        L++LD+ +  + +  +++MSKQE+K+E KQ+ G+P IK 
Sbjct: 182 LDQVLTVALKVIIWGTAAYLALSILDLMYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
             +   R  + + + +   +AT+++TNPTHYA+AL+Y + + DAPV+VAKG +L+AK++R
Sbjct: 242 WLRRRQRQLLMNLVRKEVPQATVVVTNPTHYAVALKY-ERDMDAPVVVAKGVDLLAKQIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++A EH+IP+ E   +AR L+  V I  AIP   Y+AVA+++  +Y  K
Sbjct: 301 EVAREHDIPVIENVEVARFLYAHVEIGQAIPVEMYQAVAEILAMVYRLK 349


>gi|323968302|gb|EGB63709.1| flagellar biosynthetic protein FlhB [Escherichia coli M863]
 gi|327253009|gb|EGE64663.1| flagellar biosynthetic protein FlhB [Escherichia coli STEC_7v]
          Length = 382

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52
           +D  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L    S
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61

Query: 53  PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            G++   S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F   S
Sbjct: 62  AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        ++P F +++   GIKR++S       +K+ +K ILVG++    L  +
Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHH 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I
Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP
Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  +
Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346

Query: 350 YHKK 353
           +  K
Sbjct: 347 WQLK 350


>gi|323174603|gb|EFZ60224.1| flagellar biosynthetic protein FlhB [Escherichia coli LT-68]
          Length = 382

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52
           +D  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L    S
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61

Query: 53  PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            G++   S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F   S
Sbjct: 62  AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        ++P F +++   GIKR++S       +K+ +K ILVG++    L  +
Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I
Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP
Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  +
Sbjct: 287 KVVAKGAGLVALRIREIGVENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346

Query: 350 YHKK 353
           +  K
Sbjct: 347 WQLK 350


>gi|170683078|ref|YP_001743365.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5]
 gi|170520796|gb|ACB18974.1| flagellar biosynthetic protein FlhB [Escherichia coli SMS-3-5]
          Length = 382

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|78064847|ref|YP_367616.1| flagellar biosynthesis protein FlhB [Burkholderia sp. 383]
 gi|77965592|gb|ABB06972.1| Flagellar biosynthetic protein FlhB [Burkholderia sp. 383]
          Length = 398

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 178/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           +KTEA + ++ E A  EG    SRE + F+ + A          P          G ++ 
Sbjct: 8   DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGGHLQAMLRGAFTF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D + +L++A    LE  + ++ +L    ++A         L     +G +LI  
Sbjct: 68  DRATAFDTNRMLSAAGSASLEGFAALLPILALTGVAA---------LLAPMALGGWLI-- 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
               +    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 117 ----SSKTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +      L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLGVALPDALHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|323527726|ref|YP_004229879.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001]
 gi|323384728|gb|ADX56819.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001]
          Length = 401

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 183/352 (51%), Gaps = 19/352 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S    S+   L  +L +
Sbjct: 8   EKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMS---GSIGEHLQAMLRA 63

Query: 69  ATQRKLEDISHIVFLLTHLSLS----ASRLVIPGLLLFMMFGIGSYLIQRIPV-----LN 119
           A         H     TH  ++    ASR  +  LL  + F  G+  +          L+
Sbjct: 64  AFT-----FDHASAFETHRMMAGAGAASREGLYALLPILAF-TGAAALLAPMALGGWQLS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P F R++   G+ +I+SIN  +    S  K ++VG I   ++      +L   + 
Sbjct: 118 AKGLEPKFDRLNPIAGLGKIFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALATQ 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
             H  L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E ++S G+
Sbjct: 178 PLHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+
Sbjct: 238 PHVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLV 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y 
Sbjct: 298 AARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQ 349


>gi|331647476|ref|ZP_08348568.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
 gi|330911689|gb|EGH40199.1| flagellar biosynthesis protein FlhB [Escherichia coli AA86]
 gi|331043200|gb|EGI15338.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
          Length = 382

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|134094535|ref|YP_001099610.1| part of export apparatus for flagellar proteins [Herminiimonas
           arsenicoxydans]
 gi|133738438|emb|CAL61483.1| Flagellar biosynthetic protein FlhB [Herminiimonas arsenicoxydans]
          Length = 390

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 15/350 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S +K+E A  +G+ P SRE +  + +L       F+F+ G  ++ ++L+ +LAS
Sbjct: 8   EKTEPASPRKLEQAREQGDVPRSRELATCTLLLGA--SAAFWFTGG--NMIAELNSMLAS 63

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                 E    +  LL H + S  +L+I   P  L+ ++  + S ++    + +   ++P
Sbjct: 64  GLSFDREMAFDMELLLAHAAASIIKLLIAFAPAALILIVVALASPMLIGGWLFSAQALQP 123

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F R++  +G+  + S  + V   K+  K IL+G I    +      +L  +S  P   L
Sbjct: 124 NFGRMNPIKGLGNMVSTRSAVELGKAIAKTILIGCIAWTVMKYEIDGVL-ALSVTP---L 179

Query: 186 YHAFFTVRKVLIMILLFIAT--LTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPI 241
                 V  +L++   FI +  + +  I   Y  W    KL MS+Q+++ E K+S GNP 
Sbjct: 180 QSGIEQVGHILLISFTFIVSGLIIIAGIDAPYQMWQHAKKLMMSRQDVRQESKESDGNPE 239

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK + +   R   R +MM     A +++TNPTHYA+AL+Y +    AP +VAKG + +A 
Sbjct: 240 IKAKIRQQQREMARRRMMTEVPTADVVVTNPTHYAVALKYSENGMRAPTVVAKGADEVAA 299

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           K+R+IA E+N+ + E P LAR+LF+   +   IP   Y AVA+++  ++ 
Sbjct: 300 KIREIALENNVVMLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQ 349


>gi|331653290|ref|ZP_08354295.1| flagellar biosynthetic protein FlhB [Escherichia coli M718]
 gi|331049388|gb|EGI21460.1| flagellar biosynthetic protein FlhB [Escherichia coli M718]
          Length = 382

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 197/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S+      +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSVQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGSENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|238927446|ref|ZP_04659206.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
 gi|238884728|gb|EEQ48366.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
          Length = 374

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 181/356 (50%), Gaps = 19/356 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     S+      +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDYIYLSIAGYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            ++  Q  + D  +I+ +   +++  ++   P +   M+ G+     Q     N   ++ 
Sbjct: 84  FSNLNQ--VVDAENILRIFIGIAIVLAKTAFPIMFAIMLIGLAINFFQVGLTFNTESIEF 141

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF--------I 177
              +++   G  RI+S  +LV   KSF KI+++G  +   + E    M  F        +
Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S     I + AF  +  +++M L+        D G+   Q    LKM+KQE+KDE+KQS 
Sbjct: 202 SLVAEIIFHMAFIVIGVIMVMALM--------DYGYQKWQTTQDLKMTKQEVKDEMKQSE 253

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK + +   R     +MM+   +A +IITNPTH+A+AL Y Q    AP++VAKGQ+
Sbjct: 254 GDPQIKGKIRQKQRQMAMARMMKEVPKADVIITNPTHFAIALSY-QQGMSAPLVVAKGQD 312

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++A+++++IA E  +PI E   LAR+++  V I  AIP   Y+AVA+++  +Y  K
Sbjct: 313 IVAQRIKEIAREARVPIVENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368


>gi|291562038|emb|CBL40854.1| flagellar biosynthetic protein FlhB [butyrate-producing bacterium
           SS3/4]
          Length = 357

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 190/345 (55%), Gaps = 6/345 (1%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE P++KK  DA  EGN   SR+ +    ILA + + +  + P IY    +    +   
Sbjct: 8   KTEQPTAKKRRDARKEGNIFQSRDVATVV-ILAGIFFGIRIWLPFIYGQMKNYMTWVIDG 66

Query: 70  TQRKLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             R  ED+  + +VF+   + L  +  +   LLL ++ GI ++ +Q    ++   ++P +
Sbjct: 67  AARSSEDMLSASLVFVTLSVFLKCALPL---LLLALLLGIVAHGVQTRFNVSFKSIRPKW 123

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++   GIKR++S+ N V  +K+ +KI L+  ++   L ++   M   I  NP +   +
Sbjct: 124 NRLNPLSGIKRLFSMKNAVELVKNSIKITLLLVLLYNILKQDLQPMASMIDMNPAASAAY 183

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  +LI + +    +   D  +   ++  +L+M+KQE+KDE KQ+ GNP IKNR K
Sbjct: 184 MMKMIFDLLIRVCIAFMVIAFGDYLYQRWEYEKELRMTKQEVKDEYKQTEGNPEIKNRIK 243

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
           S+ R     +MM+   +A +II NPTH A+AL+Y    ++APV++AKG + +A ++ K+ 
Sbjct: 244 SLQRQMASSRMMQKVPQADVIIRNPTHVAIALKYDPDHDNAPVVLAKGLDELALRIVKVG 303

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            E+N+   E   LAR+++    ++  IP  FY AVA+++  +Y +
Sbjct: 304 EENNVYTIENKPLARAMYNSCELDRPIPSEFYTAVAEILVYLYKQ 348


>gi|220925376|ref|YP_002500678.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS
           2060]
 gi|219949983|gb|ACL60375.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS
           2060]
          Length = 353

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ +   +++TE P+ K+++DA+  G+   S E +    +    + LL            
Sbjct: 1   MAGDTEQEDRTEEPTLKRLDDAIKRGDVATSVEVNTLFLLGGFTLVLLVAAGSAARGFAL 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   LAS       D +    +      +    V   +   +  G+   L+Q   V   
Sbjct: 61  DMRGFLAS-LHAVPSDAAAYQAVARRALAALGLAVAVPVGAAVAAGLAGGLLQHPFVWTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   ++RVS   G++R++       F K  VKI LVGT+  + L  +   +  F   +
Sbjct: 120 ETLSAKWERVSPLAGLRRLFGPEAWFQFGKGLVKIALVGTVAGLVLWGDRDRLEAFARLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +IL      V +++  IL     L + D  +   +W ++L+M++ EIK+E+K+S GNP
Sbjct: 180 PAAILPATLVLVLRLMAGILAAYVVLALGDAVYQRLRWRARLRMTRTEIKEELKESDGNP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +  +R R +MM A   AT+++ NPTH+A+ALRY +T   APV VAKG + +A
Sbjct: 240 EVKARLRQLRHARARKRMMAAVPTATVVVANPTHFAVALRY-ETGMAAPVCVAKGVDALA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA  + +P+ E P LAR+L   V I++AIP   YKAVA++I  +  ++
Sbjct: 299 LRIREIAGANGVPVVENPPLARALHATVEIDAAIPTEHYKAVAEVIGFVLRQR 351


>gi|395390|emb|CAA52218.1| flagellar biosynthetic protein [Bacillus subtilis]
          Length = 360

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 187/351 (53%), Gaps = 13/351 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65
            KTE  + KK +D   +G    S + +   S ++ L+  L   + G Y    + S +   
Sbjct: 13  EKTEKATPKKRKDTRKKGQVAKSSDVN---SAVSLLVIFLSLIAIGPYMRDRLLSFIETF 69

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
              +   KL + S++  L   L      ++ P LL+ ++ G+ S  +Q   + +   ++P
Sbjct: 70  YTESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQP 128

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +++   +G KRIYS+  +V  +KS +KI++VG      L  +Y  +L      P   L
Sbjct: 129 KLEKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEAL 188

Query: 186 YHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
               F  +  L M L     L +L   D  +    +   +KMSKQ+IKDE K+S G+PII
Sbjct: 189 S---FVSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPII 245

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K
Sbjct: 246 KSKIKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALK 305

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +RKIA EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 306 IRKIAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|154686055|ref|YP_001421216.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens
           FZB42]
 gi|154351906|gb|ABS73985.1| FlhB [Bacillus amyloliquefaciens FZB42]
          Length = 359

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 192/358 (53%), Gaps = 27/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS-------LFSSILACLIYL---LFFFSPGIYSV 58
            KTE  + KK +D   +G    S + +       +F S++A   Y+   L  F    Y+ 
Sbjct: 13  EKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYTK 72

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           +  LH L ASA         H +F+ T   +S   ++ P +L+ ++ G+ S  +Q   + 
Sbjct: 73  SISLH-LSASAV--------HELFVDTVKDISL--ILAPIMLVALVAGVVSNYMQVGFLF 121

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   +KP   ++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L    
Sbjct: 122 SAEVLKPDLNKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPL 181

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             P  +L    F  +  L M L     L +L   D  +    +   ++MSKQ+IKDE K+
Sbjct: 182 LTPAEVLT---FVSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKK 238

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+PIIK++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG
Sbjct: 239 SEGDPIIKSKIKQKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKG 298

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A K+R+IA EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 299 VDHLALKIRQIAKEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356


>gi|304438443|ref|ZP_07398383.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368526|gb|EFM22211.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 374

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 180/348 (51%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     S+ S    +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFTLKLLWDSIYLSIASYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +  Q    D  +I+ +   + +  ++   P +   M+ G+     Q     N   ++ 
Sbjct: 84  FTNLNQSV--DTENIIHIFIGIIVVLAKTAFPVMFAIMLIGLAINFFQVGLTFNTESIEF 141

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G  RI+S  +LV   KSF KI+++G  +   + E    M  F+  +  + L
Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++  +++  I  + ++D G+   Q    LKM+KQE+KDE+KQS G+P IK +
Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGK 261

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +I+TNPTHYA+AL Y Q    AP++VAKGQ+L+A+++++
Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIVTNPTHYAIALSY-QQGMSAPLVVAKGQDLVAQRIKE 320

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E  +PI E   LAR+++  V I  AIP   Y+AVA+++  +Y  K
Sbjct: 321 IAREARVPIIENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368


>gi|218705380|ref|YP_002412899.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026]
 gi|293405373|ref|ZP_06649365.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412]
 gi|298381016|ref|ZP_06990615.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302]
 gi|300899130|ref|ZP_07117412.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1]
 gi|218432477|emb|CAR13370.1| flagellar export pore protein [Escherichia coli UMN026]
 gi|291427581|gb|EFF00608.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412]
 gi|298278458|gb|EFI19972.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302]
 gi|300357248|gb|EFJ73118.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1]
          Length = 382

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52
           +D  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L    S
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61

Query: 53  PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            G++   S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F   S
Sbjct: 62  AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        ++P F +++   GIKR++S       +K+ +K ILVG++    L  +
Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I
Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP
Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  +
Sbjct: 287 KVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346

Query: 350 YHKK 353
           +  K
Sbjct: 347 WQLK 350


>gi|116872068|ref|YP_848849.1| flagellar biosynthesis protein FlhB [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740946|emb|CAK20066.1| flagellar biosynthetic protein FlhB, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 348

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F L        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYAVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|330876032|gb|EGH10181.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 378

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  EG    S+E +    +L     LL F + GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMFGT-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  + D S++   L    L A  +++P L+  +   +   ++    + + 
Sbjct: 60  ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L++    ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|300917538|ref|ZP_07134195.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1]
 gi|300415243|gb|EFJ98553.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1]
          Length = 382

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|218673114|ref|ZP_03522783.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56]
          Length = 137

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 104/127 (81%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY +
Sbjct: 1   MTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAR 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA
Sbjct: 61  EENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVA 120

Query: 344 QLIYKIY 350
           +LI+++Y
Sbjct: 121 ELIHRVY 127


>gi|15802292|ref|NP_288317.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7
           EDL933]
 gi|12515942|gb|AAG56870.1|AE005410_6 putative part of export apparatus for flagellar proteins
           [Escherichia coli O157:H7 str. EDL933]
          Length = 382

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 197/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++ V I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGXENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|16802721|ref|NP_464206.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes EGD-e]
 gi|46906930|ref|YP_013319.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091642|ref|ZP_00229438.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|47095244|ref|ZP_00232855.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|217965223|ref|YP_002350901.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|224498762|ref|ZP_03667111.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes Finland
           1988]
 gi|224502016|ref|ZP_03670323.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           R2-561]
 gi|226223310|ref|YP_002757417.1| flagellar biosynthetic protein flhB [Listeria monocytogenes
           Clip81459]
 gi|254824041|ref|ZP_05229042.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-194]
 gi|254829336|ref|ZP_05234023.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           N3-165]
 gi|254830330|ref|ZP_05234985.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 10403S]
 gi|254900085|ref|ZP_05260009.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes J0161]
 gi|254911362|ref|ZP_05261374.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932041|ref|ZP_05265400.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           HPB2262]
 gi|254935689|ref|ZP_05267386.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900]
 gi|254992440|ref|ZP_05274630.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-064]
 gi|255521624|ref|ZP_05388861.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-175]
 gi|284801009|ref|YP_003412874.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5578]
 gi|284994151|ref|YP_003415919.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5923]
 gi|16410068|emb|CAC98757.1| lmo0679 [Listeria monocytogenes EGD-e]
 gi|46880196|gb|AAT03496.1| putative flagellar biosynthetic protein flhB [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47016315|gb|EAL07237.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47019961|gb|EAL10698.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|217334493|gb|ACK40287.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|225875772|emb|CAS04475.1| Putative flagellar biosynthetic protein flhB [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258601748|gb|EEW15073.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           N3-165]
 gi|258608271|gb|EEW20879.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900]
 gi|284056571|gb|ADB67512.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5578]
 gi|284059618|gb|ADB70557.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5923]
 gi|293583594|gb|EFF95626.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           HPB2262]
 gi|293589298|gb|EFF97632.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293593270|gb|EFG01031.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-194]
 gi|307570218|emb|CAR83397.1| flagellar biosynthetic protein [Listeria monocytogenes L99]
 gi|328467248|gb|EGF38328.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 1816]
 gi|328475644|gb|EGF46393.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 220]
 gi|332311104|gb|EGJ24199.1| Flagellar biosynthesis protein [Listeria monocytogenes str. Scott
           A]
          Length = 348

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F L        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|15831844|ref|NP_310617.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168747910|ref|ZP_02772932.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757917|ref|ZP_02782924.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762323|ref|ZP_02787330.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770866|ref|ZP_02795873.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776570|ref|ZP_02801577.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783183|ref|ZP_02808190.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789748|ref|ZP_02814755.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC869]
 gi|168801881|ref|ZP_02826888.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC508]
 gi|195939584|ref|ZP_03084966.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810589|ref|ZP_03252465.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816756|ref|ZP_03257876.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821749|ref|ZP_03262069.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400586|ref|YP_002270964.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328966|ref|ZP_03445047.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793504|ref|YP_003078341.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227619|ref|ZP_05941900.1| predicted flagellar export pore protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258215|ref|ZP_05950748.1| predicted flagellar export pore protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|13362058|dbj|BAB36013.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768084|gb|EDU31928.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017418|gb|EDU55540.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999430|gb|EDU68416.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355171|gb|EDU73590.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360277|gb|EDU78696.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367382|gb|EDU85798.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370698|gb|EDU89114.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC869]
 gi|189376036|gb|EDU94452.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC508]
 gi|208725105|gb|EDZ74812.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731099|gb|EDZ79788.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741872|gb|EDZ89554.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161986|gb|ACI39419.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209767300|gb|ACI81962.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|209767302|gb|ACI81963.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|209767306|gb|ACI81965.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|217318313|gb|EEC26740.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592904|gb|ACT72265.1| predicted flagellar export pore protein [Escherichia coli O157:H7
           str. TW14359]
 gi|320188579|gb|EFW63241.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           EC1212]
 gi|326342258|gb|EGD66039.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           1044]
 gi|326343808|gb|EGD67570.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           1125]
          Length = 382

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 197/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++ V I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|303240269|ref|ZP_07326788.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus
           CD2]
 gi|302592179|gb|EFL61908.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus
           CD2]
          Length = 400

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 190/349 (54%), Gaps = 7/349 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS-VTSDLHVLLA 67
           +KTE  + KK E A  EG    SRE +  + +L CL   +      +Y  + +   ++ A
Sbjct: 49  DKTEKATPKKREKAREEGQVLQSREMTA-AIVLLCLFITVKIAGGYMYEQIYAYFKIVFA 107

Query: 68  SATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             +  KL D   +  ++ L   L L   ++V P   + ++ GI S   Q   +     + 
Sbjct: 108 DYS--KLTDLFTVEGLIKLFIDLLLRFLKIVAPVFAVALITGIVSGYAQVGFLFTTKTLA 165

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
             F R++   G KRI+S+ ++   +KS +KI+++G I    L +    +L+ ++ +  SI
Sbjct: 166 FKFSRINPLSGFKRIFSLRSVTELVKSILKIVVIGYIGYSYLADEAKNILNTMNMDVISI 225

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
             +   T   V I + + +  L VLD G+ + ++   LKMSKQEIK E K++ GNP +K 
Sbjct: 226 AAYICVTSINVAIRMCIAMLILGVLDYGYQWWEYEKSLKMSKQEIKQENKEAEGNPEVKA 285

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + +   R     +M++   +A ++ITNPTH+A+A++Y    +DAP+++AKGQ+ IA +++
Sbjct: 286 KIRQKQRQIALRRMLQDIPKADVVITNPTHFAVAIKYDPKVSDAPIVIAKGQDYIALRIK 345

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA E+ + I E   LAR+L+  V I   IPP  ++AVA+++  +Y  K
Sbjct: 346 EIAKENKVEIVENKPLARTLYASVDIGERIPPELFQAVAEVLAFVYSLK 394


>gi|331683387|ref|ZP_08383988.1| flagellar biosynthetic protein FlhB [Escherichia coli H299]
 gi|331079602|gb|EGI50799.1| flagellar biosynthetic protein FlhB [Escherichia coli H299]
          Length = 382

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 196/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+T  L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLTRRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSILVGSVTGFYLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|300904767|ref|ZP_07122595.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1]
 gi|301306905|ref|ZP_07212951.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1]
 gi|300403281|gb|EFJ86819.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1]
 gi|300837880|gb|EFK65640.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1]
 gi|315257287|gb|EFU37255.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 85-1]
          Length = 382

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 29/364 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFS 52
           +D  D+KTEAP+  ++E A  EG  P SRE +  L   +  C+I+         L    S
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLS 61

Query: 53  PGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            G++   S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F   S
Sbjct: 62  AGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS 119

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        ++P F +++   GIKR++S       +K+ +K ILVG++    L  +
Sbjct: 120 -------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I
Sbjct: 167 WPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDI 226

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP
Sbjct: 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAP 286

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  +
Sbjct: 287 KVVAKGAGLLALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 346

Query: 350 YHKK 353
           +  K
Sbjct: 347 WQLK 350


>gi|17549613|ref|NP_522953.1| flagellar biosynthetic FlhB transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17431867|emb|CAD18545.1| probable flagellar biosynthetic flhb transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 387

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 184/366 (50%), Gaps = 33/366 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE  S++++E A  EG+ P SRE   F  +LA     L+     I    S
Sbjct: 1   MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFV-LLATGALGLWVMGESIVRTAS 58

Query: 61  DLHVLLASATQ-------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
                LA   +       R  E   ++      L++     V+ GL+L ++    S L  
Sbjct: 59  SF---LARCLEFHRYDYTRAQEQWQYVGAQFGPLAM-----VLAGLILMLVLAALSPLAL 110

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
               ++   + P   R+    G+KR++S+  L+   +   K++LVG +        ++ +
Sbjct: 111 TRGAVSFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGV-------GWWLI 163

Query: 174 L----DFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMS 225
           L    DF+   P   L         V  +  L +A + +L    D+  +  Q+  K +M+
Sbjct: 164 LHYRDDFVEL-PRQDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMT 222

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E++ E ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E
Sbjct: 223 KEEVRKEHRESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQE 282

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP ++AKG +++A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA++
Sbjct: 283 GGAPRVLAKGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEV 342

Query: 346 IYKIYH 351
           +  +Y 
Sbjct: 343 LAYVYQ 348


>gi|307264886|ref|ZP_07546448.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920144|gb|EFN50356.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 363

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 185/348 (53%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + + +  LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73

Query: 68  --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|300914395|ref|ZP_07131711.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561]
 gi|307724369|ref|YP_003904120.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513]
 gi|300889330|gb|EFK84476.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561]
 gi|307581430|gb|ADN54829.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513]
          Length = 363

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 183/347 (52%), Gaps = 2/347 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67
            KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL  
Sbjct: 15  EKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLYT 74

Query: 68  -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            S     + ++  I  L T++   A  + +P +LL  +  + S  +Q   V     +   
Sbjct: 75  YSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAFK 134

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F+R++  EG KRI+S   LV  +KS  K+ ++  I+   L   Y  +   +  +   IL 
Sbjct: 135 FERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDILK 194

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK   
Sbjct: 195 YALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAEI 254

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA +M++ 
Sbjct: 255 RRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKEE 314

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 315 AKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|291617775|ref|YP_003520517.1| FlhB [Pantoea ananatis LMG 20103]
 gi|291152805|gb|ADD77389.1| FlhB [Pantoea ananatis LMG 20103]
          Length = 397

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 191/358 (53%), Gaps = 16/358 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57
           +SEN + + KTE+P++ ++E A  EG  P SRE    +S+L  L  ++  +  G      
Sbjct: 15  VSEN-SDEEKTESPTAHRLEKAREEGQIPRSRE---LTSLLMLLAGIMILWVGGAMMAHR 70

Query: 58  ----VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
               V++ L    A  T  K+     I+  + +L + A   ++P L   ++  I S ++ 
Sbjct: 71  LAAMVSTGLRFDHAMVTDDKI-----IIAHVGNLIMQAIAALLPLLGGLVLVAIASPMLL 125

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              V++   +K  F +++   G+KR+++        K  +K ILVG +    +  ++  M
Sbjct: 126 GGVVISGKSIKVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVGCVAGWYVWSHWPDM 185

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L  I+ +P + L H    +     +++L +  +   D+ W  +  + KL+MS+QEI+DE 
Sbjct: 186 LRLIAESPTTALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHFKKLRMSRQEIRDEH 245

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  G+P +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP ++A
Sbjct: 246 KQQEGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIA 305

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG   IA ++R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 306 KGAGDIALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYGAVAEVLAWVWQ 363


>gi|209695727|ref|YP_002263657.1| flagellar biosynthesis protein FlhB [Aliivibrio salmonicida
           LFI1238]
 gi|208009680|emb|CAQ79979.1| polar flagellar assembly protein FlhB [Aliivibrio salmonicida
           LFI1238]
          Length = 376

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 195/362 (53%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           M+++D  + +TE  +SK+++ A ++G    S+E AS+  S+L C    L +F   +    
Sbjct: 1   MADSDGQE-RTEDATSKRLQQAKDKGQVARSKELASV--SVLVCGAISLMWFGDEVGKAL 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL----LLFMMFGIGSYLIQRI 115
             +     S ++ ++ D +    LL  +  +   LV P L    +LF+   IG+  +  I
Sbjct: 58  LSIMSRFFSISREEIFDTNK---LLEIVGGALVALVFPVLKILLMLFVAALIGAAGLGGI 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYF 171
              +     P   +++   GIKR++ + + V  +KS +K+ LVG     +I  S  + + 
Sbjct: 115 S-FSAEAAMPKPSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGTAFYLINKSKADLFQ 173

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             LD   +N    ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQEIKD
Sbjct: 174 LSLDTYPSN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEIKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K++ G P +K R + + R   + +MM     A +I+TNP HY++ALRY QT++ AP++
Sbjct: 230 EYKETEGKPEVKGRIRMLQREMTQRRMMADVPSADVIVTNPEHYSVALRYDQTKDSAPIV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + IA K+R+IA EHNI I   P LAR+L+    +   IP   + AVAQ++  I+ 
Sbjct: 290 VAKGVDHIAMKIREIAREHNIDILPAPPLARALYHSTEVEQQIPDGLFAAVAQILAYIFQ 349

Query: 352 KK 353
            K
Sbjct: 350 MK 351


>gi|300764490|ref|ZP_07074483.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL
           N1-017]
 gi|300514844|gb|EFK41898.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL
           N1-017]
          Length = 348

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F L        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLANMESYSLFYLMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDEVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|324007265|gb|EGB76484.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 57-2]
          Length = 382

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|24113260|ref|NP_707770.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str. 301]
 gi|30063328|ref|NP_837499.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str.
           2457T]
 gi|24052262|gb|AAN43477.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 2a str. 301]
 gi|30041580|gb|AAP17308.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 2a str. 2457T]
 gi|281601322|gb|ADA74306.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 2002017]
 gi|313650088|gb|EFS14501.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2a str.
           2457T]
 gi|332757344|gb|EGJ87681.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2747-71]
 gi|332757435|gb|EGJ87770.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-671]
 gi|332766606|gb|EGJ96810.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2930-71]
 gi|333017652|gb|EGK36964.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-304]
          Length = 397

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|162139338|ref|YP_689375.2| flagellar biosynthesis protein FlhB [Shigella flexneri 5 str. 8401]
          Length = 397

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|167040311|ref|YP_001663296.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514]
 gi|166854551|gb|ABY92960.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514]
          Length = 360

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 183/347 (52%), Gaps = 2/347 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67
            KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL  
Sbjct: 12  EKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLYT 71

Query: 68  -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            S     + ++  I  L T++   A  + +P +LL  +  + S  +Q   V     +   
Sbjct: 72  YSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAFK 131

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F+R++  EG KRI+S   LV  +KS  K+ ++  I+   L   Y  +   +  +   IL 
Sbjct: 132 FERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDILK 191

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK   
Sbjct: 192 YALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAEI 251

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA +M++ 
Sbjct: 252 RRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKEE 311

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 312 AKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358


>gi|170731604|ref|YP_001763551.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
           MC0-3]
 gi|169814846|gb|ACA89429.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
           MC0-3]
          Length = 399

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 178/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           +KTEA + ++ E A  EG    SRE + F+ + A          P          G ++ 
Sbjct: 8   DKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLRGAFTF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    LE  + ++ LL    ++A         L     +G +LI +
Sbjct: 68  DRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAA---------LLAPMALGGWLISQ 118

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +      L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLGVALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|16078701|ref|NP_389520.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309516|ref|ZP_03591363.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313840|ref|ZP_03595645.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318763|ref|ZP_03600057.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323035|ref|ZP_03604329.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315405|ref|YP_004207692.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5]
 gi|7404374|sp|P35538|FLHB_BACSU RecName: Full=Flagellar biosynthetic protein flhB
 gi|2634010|emb|CAB13511.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|320021679|gb|ADV96665.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5]
          Length = 360

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 184/348 (52%), Gaps = 7/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +D   +G    S + +   S+L   + L+         + S +      
Sbjct: 13  EKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYTE 72

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           +   KL + S++  L   L      ++ P LL+ ++ G+ S  +Q   + +   ++P  +
Sbjct: 73  SLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKLE 131

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++   +G KRIYS+  +V  +KS +KI++VG      L  +Y  +L      P   L   
Sbjct: 132 KLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALS-- 189

Query: 189 FFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            F  +  L M L     L +L   D  +    +   +KMSKQ+IKDE K+S G+PIIK++
Sbjct: 190 -FVSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSK 248

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RK
Sbjct: 249 IKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRK 308

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 309 IAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|312792666|ref|YP_004025589.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179806|gb|ADQ39976.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 366

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 191/346 (55%), Gaps = 3/346 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + +K ++A   G    SRE +   ++L  +++L F +S  +  +         S
Sbjct: 15  TKTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFAYSSIVEPLQQGSKYFF-S 73

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                LED+     LL+ +  ++ ++++P  L  M+        Q   ++    +K SF+
Sbjct: 74  NLNYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLITGQSLKMSFQ 133

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFISANPHSILYH 187
           +++  EG KRI+SIN++V  +KS +K++++G     S T+++   +L+    N  +I+  
Sbjct: 134 KINPIEGFKRIFSINSVVELIKSILKVLIIG-YTGYSYTQSFAKKLLEMYEMNVLTIVKF 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +F +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ +
Sbjct: 193 SFDSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIR 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA K+++ A
Sbjct: 253 ERQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +H I I E   LAR+L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 313 IKHRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358


>gi|312126838|ref|YP_003991712.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776857|gb|ADQ06343.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 366

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 190/345 (55%), Gaps = 3/345 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  I  +         S 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIEPLQQGSKYFF-SN 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               LED+     LL+ +  ++ ++V+P  L  M         Q   ++    +K SF++
Sbjct: 75  LNYNLEDVRDASRLLSFIITTSLKMVLPFCLTIMFVATIVEWAQSSFLITAQSLKMSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFISANPHSILYHA 188
           ++  EG KRI+SIN++V  +KS +K++++G     S T+++   +L+    N  +I+  +
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIG-YTGYSYTQSFAKKLLEMYEMNVLTIVKFS 193

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           F +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ + 
Sbjct: 194 FDSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRE 253

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA K+++ A 
Sbjct: 254 RQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAI 313

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +H I I E   LA++L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 KHRIEIVENRELAKALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358


>gi|297538882|ref|YP_003674651.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301]
 gi|297258229|gb|ADI30074.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301]
          Length = 394

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 186/361 (51%), Gaps = 21/361 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE  SSK++E+A  EG+ P SRE +  + +    + +L         +   L 
Sbjct: 3   EDSDLEKTEQASSKRLEEARKEGDVPRSRELATVTVLFTAGLTILIMSE----HLNQALK 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNL 120
             +++  Q           LL   + S S L+    P  L+ +   I + ++    + + 
Sbjct: 59  TTMSAGLQFDRTAAFEPTVLLMRTADSISSLLTAFAPLALILVAVAIAAPVLVGGWIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS-- 178
               P F R++  +G+  I S N+LV  +KS  K++LVG +  + ++ +   +L   +  
Sbjct: 119 KAFVPQFSRLNPIKGLTNIISKNSLVELVKSIAKVMLVGIVAYVVISHDMEPILTLSTLP 178

Query: 179 -----ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                A   S++   F T+    +  L+FIA +   D+ +  + + +KLKM+K+E++ E 
Sbjct: 179 LKSSIAQVGSLMLTGFLTI----VSTLVFIAAI---DVPYQLYHYANKLKMTKEEVRQES 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K+S GNP IK + +   R   + +MM     A ++ITNPTHYA+A++Y      APV+VA
Sbjct: 232 KESDGNPEIKAKIRQQQREMAKRRMMSEIPNADVVITNPTHYAVAIKYQDEGMRAPVVVA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A K+R++A EH + I E P LAR+L+    + + IP   Y AVA+++  ++  +
Sbjct: 292 KGADEVALKIREVAGEHKVLIMESPKLARALYAHTELGNEIPEALYSAVAEILAYVFQMR 351

Query: 354 I 354
           I
Sbjct: 352 I 352


>gi|326389464|ref|ZP_08211031.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994469|gb|EGD52894.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 363

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 185/348 (53%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + + +  LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73

Query: 68  --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMKRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|26248146|ref|NP_754186.1| flagellar biosynthesis protein FlhB [Escherichia coli CFT073]
 gi|91211104|ref|YP_541090.1| flagellar biosynthesis protein FlhB [Escherichia coli UTI89]
 gi|110641997|ref|YP_669727.1| flagellar biosynthesis protein FlhB [Escherichia coli 536]
 gi|117624031|ref|YP_852944.1| flagellar biosynthesis protein FlhB [Escherichia coli APEC O1]
 gi|191172970|ref|ZP_03034504.1| flagellar biosynthetic protein FlhB [Escherichia coli F11]
 gi|218558744|ref|YP_002391657.1| flagellar biosynthesis protein FlhB [Escherichia coli S88]
 gi|227885693|ref|ZP_04003498.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972]
 gi|237705835|ref|ZP_04536316.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA]
 gi|300994042|ref|ZP_07180661.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1]
 gi|301050765|ref|ZP_07197623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1]
 gi|306814291|ref|ZP_07448457.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
 gi|26108550|gb|AAN80753.1|AE016762_6 Flagellar biosynthetic protein flhB [Escherichia coli CFT073]
 gi|91072678|gb|ABE07559.1| flagellar biosynthetic protein FlhB [Escherichia coli UTI89]
 gi|110343589|gb|ABG69826.1| flagellar biosynthetic protein FlhB [Escherichia coli 536]
 gi|115513155|gb|ABJ01230.1| flagellar biosynthesis protein B [Escherichia coli APEC O1]
 gi|190906681|gb|EDV66286.1| flagellar biosynthetic protein FlhB [Escherichia coli F11]
 gi|218365513|emb|CAR03240.1| flagellar export pore protein [Escherichia coli S88]
 gi|226900592|gb|EEH86851.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA]
 gi|227837266|gb|EEJ47732.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972]
 gi|294491560|gb|ADE90316.1| flagellar biosynthetic protein FlhB [Escherichia coli IHE3034]
 gi|300297582|gb|EFJ53967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1]
 gi|300406410|gb|EFJ89948.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1]
 gi|305852450|gb|EFM52901.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
 gi|307553898|gb|ADN46673.1| flagellar biosynthetic protein FlhB [Escherichia coli ABU 83972]
 gi|307626638|gb|ADN70942.1| flagellar biosynthesis protein FlhB [Escherichia coli UM146]
 gi|315290307|gb|EFU49683.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 153-1]
 gi|323186760|gb|EFZ72080.1| flagellar biosynthetic protein FlhB [Escherichia coli RN587/1]
 gi|323952382|gb|EGB48255.1| flagellar biosynthetic protein FlhB [Escherichia coli H252]
 gi|324013524|gb|EGB82743.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 60-1]
          Length = 382

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|71736663|ref|YP_275525.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484900|ref|ZP_05638941.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289651607|ref|ZP_06482950.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487818|ref|ZP_07005858.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557216|gb|AAZ36427.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157543|gb|EFH98623.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330889044|gb|EGH21705.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986505|gb|EGH84608.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011080|gb|EGH91136.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 378

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|239997097|ref|ZP_04717621.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126]
          Length = 374

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 198/356 (55%), Gaps = 23/356 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----IYSVTSDLH 63
            KTE P+ KK+EDA  +G    SRE S  ++++  +   +F F  G     ++ +T  + 
Sbjct: 6   EKTEDPTGKKLEDARKKGQLARSRELS--TTLVLIVSAFMFLFVGGWIAESVFKLTQRMF 63

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121
           +L    ++ +  DI+H+ F     + SA   V P +LL+M+  + + +   I +   N  
Sbjct: 64  IL----SRDETYDITHM-FGAWGEAFSA---VGPTVLLYMVVAMIAGIYGSIALGGFNFT 115

Query: 122 --HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISLT-ENYFTMLDFI 177
               KP   ++S  +G KR++ +N LV  +KS  K++ ++G  I   L  E+    LD +
Sbjct: 116 WEGAKPKGSKMSPIQGFKRMFGMNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLD-M 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
              P +I +HA   ++   ++++  +  + ++D+ +  ++   ++KM+KQE+KDE K + 
Sbjct: 175 ELYPGNI-FHALDMLKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAE 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P++K R + +       +MM+   +A +++TNPTH+++A++Y +    APV+VAKG +
Sbjct: 234 GDPMVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGVRAPVVVAKGAD 293

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A  +RKIA  +++P+   P LAR++F    ++  IP   + AVAQ++  +Y  K
Sbjct: 294 ELAMHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349


>gi|83944181|ref|ZP_00956637.1| flagella-associated protein [Sulfitobacter sp. EE-36]
 gi|83955118|ref|ZP_00963774.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1]
 gi|83840447|gb|EAP79620.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1]
 gi|83845048|gb|EAP82929.1| flagella-associated protein [Sulfitobacter sp. EE-36]
          Length = 375

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 185/358 (51%), Gaps = 12/358 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN     KT  P+ KK++DA  +G+ P S+E      ++A L             +  
Sbjct: 1   MAENSDSTEKTLEPTEKKLKDARKKGDVPSSKETGNMVVVVAMLGIAALVLPYQAPQIVV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-----LFMMFGIGSYLIQRI 115
            L VLL  +    +      V  L  +      +++  +L     LF+   IG+ +IQ  
Sbjct: 61  ALSVLLDHSPNLMVATGEPGVIRLGQIMSEFFYMIVWAVLPIFGVLFLGGAIGA-VIQGE 119

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172
            V+    +KP   ++S  EG+KR++S N LV F KS VK++ +G +    T       +T
Sbjct: 120 TVVAAERIKPKLSKLSPLEGLKRLFSANALVEFAKSIVKVLAIGGLAVWFTNEAVRRIWT 179

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
              FI   P  +  +      K+LI   + +  + + DI W    W  K +MS+++IKDE
Sbjct: 180 SSGFI---PEHLPGYLTAAAVKLLIAAAILLVPIAIADILWRRFDWRRKQRMSQKDIKDE 236

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K+S G+P I+ ++    R   + + + A   A +I+TNPTHY++AL+Y   ++ APV +
Sbjct: 237 HKESEGSPEIRQKRARRRRELSQQRTITAVPLADVILTNPTHYSIALKYDPAQDMAPVCI 296

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           AKG + +A+++R++A EH+IP+ E   L R L+ ++ ++  IP   ++ VA++I  ++
Sbjct: 297 AKGADHLARRIREVAAEHDIPMIENKPLTRMLYDEIDVDQVIPVAHWEIVAEIISFVF 354


>gi|315286607|gb|EFU46040.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 110-3]
          Length = 400

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 20  SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 75

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 76  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 135

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 136 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 195

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 196 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 255

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 256 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 315

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 316 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 368


>gi|330880588|gb|EGH14737.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 378

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 186/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++  +   
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ +  L M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKTLLMTKQEVRDEQKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074126|gb|ADJ63525.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 391

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 193/360 (53%), Gaps = 25/360 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-----FFFSPGIYSV 58
            D+   +TE  + K+IE A  +G+ P SRE      +  CL+ L+     + FS  + + 
Sbjct: 3   EDSDMERTEPATGKRIERAREQGDVPRSRE------LATCLVLLVGGSCVWMFSGPVVTS 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
              + V + S  +  + D   ++ L++   L  +  VIP   L  +  + + L     + 
Sbjct: 57  LDRIMVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-- 176
           N++ + P F +++   G   ++S+N+LV   K+ +K +LVGT+  +++      ++    
Sbjct: 117 NVSSLAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGV 176

Query: 177 -----ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
                  A+   +L+ +F T    ++  L+FIA   VLD+ +    +  KL+M+++E+K 
Sbjct: 177 ESLKTAGAHAAQLLWISFIT----MVSALIFIA---VLDVPYQLWNYGRKLRMTREEVKQ 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K+S G+P IK + +++ R+  R +MM     A +++TNPTHYA+AL+Y + +  AP +
Sbjct: 230 EHKESEGDPHIKGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + IA K+R++A EH +P+ E P LAR+L     I   IP   Y AVA+++  ++ 
Sbjct: 290 VAKGSDEIAAKIRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQ 349


>gi|170694379|ref|ZP_02885533.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
 gi|170140802|gb|EDT08976.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
          Length = 401

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 183/351 (52%), Gaps = 17/351 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S    S+   L  +L +
Sbjct: 8   EKTESATPRRLQKAREEGQIARSRELSTFA-LLAAGFFGVWGMSD---SIGEHLQAMLRA 63

Query: 69  ATQRKLEDISHIVFLLTH-LSLSASRLVIPGL--LLFMMFGIGSYLIQRIPV-----LNL 120
           A         H     TH + + A      GL  LL ++   G+  +          L+ 
Sbjct: 64  AFT-----FDHAGAFETHRMMIGAGAASREGLYALLPILAVTGAAALLAPMALGGWQLST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F+R++   G+ +I+SIN  +    S  K ++VG I   ++      +L   +  
Sbjct: 119 KGLEPKFERLNPIAGLGKIFSINGPIQLAMSLAKTLVVGIIGGTAIWNRREEILALATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y 
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQ 349


>gi|289629017|ref|ZP_06461971.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866461|gb|EGH01170.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 378

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLLVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|295678071|ref|YP_003606595.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002]
 gi|295437914|gb|ADG17084.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002]
          Length = 411

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 188/361 (52%), Gaps = 22/361 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+ + ++++ A  EG    SRE S F+ +LA   Y       G++ ++ 
Sbjct: 1   MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFY-------GVWGMSG 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYLIQRIPV-- 117
           ++   L +  +  L      VF    + + A      GL  L  + G+        P+  
Sbjct: 52  NIGEHLQNMVRASLMFNHASVFDTNRMLIGAGTAGREGLYALVPVLGVTGLAALLAPMAL 111

Query: 118 ----LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
               L+   ++P F R++  EG  R++SIN  +    S  K ++VG I   ++   +   
Sbjct: 112 GGWQLSAKGLEPKFNRLNPIEGFGRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQF 171

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSKQEIK 230
           L   +   +  L ++   +     M +  +  +  LD+    WSYH+   KL+M+K+E+K
Sbjct: 172 LALATQPLNVALANSMHLIAVCCGMTVAGMFAVAALDVPYQLWSYHK---KLRMTKEEVK 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E ++S G+P IK + +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP 
Sbjct: 229 REHRESEGDPHIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPK 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG NL+A ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y
Sbjct: 289 VVAKGVNLVAARIREIATENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVY 348

Query: 351 H 351
            
Sbjct: 349 Q 349


>gi|289433957|ref|YP_003463829.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170201|emb|CBH26741.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 348

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 182/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGGMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L           S+ +F +        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPNLASIESYSLFYIMEFG----KVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  LV  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 KQIFSLFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|293604994|ref|ZP_06687390.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC
           43553]
 gi|292816599|gb|EFF75684.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC
           43553]
          Length = 384

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 187/348 (53%), Gaps = 11/348 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLA 67
            K+EA S +++E A  EG    SRE   F  +LA  + +++     +Y  ++  LH  LA
Sbjct: 8   EKSEAASPRRLEKAREEGQIARSRELGTFM-MLAAGVGVIWAGGGSLYRGLSGVLHNGLA 66

Query: 68  SATQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
              QR + D    +   V    H  L+   L + G+L  +   + S L+  I V++   +
Sbjct: 67  F-DQRIVTDPGVMVEQAVIGFGHALLAL--LPVFGVLAVVAV-LSSVLLGGI-VISGKPL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           + +F ++SL  G+KR++S   +V  +K+  K +LVG +    +   +  ML  +   P +
Sbjct: 122 QANFSKLSLFAGLKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLGLMHVAPSA 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     +I+  +  + +LD+ W       KL+MSK++++ E K+S G+P +K
Sbjct: 182 ALIKALSLVAICCALIVASLLVIVLLDVPWQIFSHLKKLRMSKEDVRQEHKESEGDPHVK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R   R +MM    RA +++TNPTHYA+AL+Y + ++ AP ++AKG  LIA K+
Sbjct: 242 ARIRQQQRQAARRRMMSEVPRADVVVTNPTHYAVALKYDEDKSGAPRVIAKGTGLIAAKI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           R++A E+ IP  E P LAR+L + V +   IP   Y AVA+++  ++ 
Sbjct: 302 RELAAENRIPTLEAPPLARALHQHVELGKEIPAELYTAVAEVLAWVFQ 349


>gi|262273550|ref|ZP_06051364.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
 gi|262222528|gb|EEY73839.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
          Length = 375

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 30/365 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ A D KTE PS +KI  A  EGN P SRE  L ++++     LL      + + +S
Sbjct: 1   MSDSSAQD-KTERPSEQKIRKAREEGNLPRSRE--LVTALMMVASALL------LSAFSS 51

Query: 61  DLHVLLASATQRKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            +H  + S ++  L      +F       LL   ++ A++ + P   L M+  IG+ L++
Sbjct: 52  AIHHTIVSVSEMTLNIDKDTIFSPDKMGELLWQSAILATQALAPLFALIMLVSIGANLLR 111

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
               ++   + P   +++   GIKRI+S N+LV  +KS +K+  +G  +   L  +Y   
Sbjct: 112 GGWNISTKAMMPKLSKLNPLSGIKRIFSANSLVELIKSILKVTFIGGAL-YWLINHY--- 167

Query: 174 LDFISANPHSILYHA-------FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
           L+ I A  H+ L  A        +T   V  ++LLFIA   VL++ +S +++  KLKM+K
Sbjct: 168 LNEIIALQHTRLSAAIPAFLDLLWTGLFVYGLVLLFIA---VLEMPYSSYEYIKKLKMTK 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K + G P IK R + + R   +    +    A +IITNPTHYA+AL+Y  ++ 
Sbjct: 225 QEVKEEHKNTEGRPEIKARIRQLQRQMSQRAFAKTVPTADVIITNPTHYAVALKYDLSKA 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP ++AKG +  A ++R+IA +H +P+ E P LAR+++        IP   Y AVA ++
Sbjct: 285 NAPFVIAKGVDQAALQIRQIAQQHGLPVVEVPPLARAVYYSTNEWQEIPAQLYVAVAHVL 344

Query: 347 YKIYH 351
             ++ 
Sbjct: 345 NYVFQ 349


>gi|52080241|ref|YP_079032.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC
           14580]
 gi|52785618|ref|YP_091447.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC
           14580]
 gi|319645980|ref|ZP_08000210.1| FlhB protein [Bacillus sp. BT1B_CT2]
 gi|52003452|gb|AAU23394.1| flagella-associated protein [Bacillus licheniformis ATCC 14580]
 gi|52348120|gb|AAU40754.1| FlhB [Bacillus licheniformis ATCC 14580]
 gi|317391730|gb|EFV72527.1| FlhB protein [Bacillus sp. BT1B_CT2]
          Length = 359

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 193/349 (55%), Gaps = 9/349 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK  ++  +G   +++ A + +++   +++L F F   I     D  + L  
Sbjct: 13  EKTEKATPKKRRESRKKGQ--VAKSADVNTAVTLLIVFLSFLF---IGPFMRDRLLGLIE 67

Query: 69  ATQRKL----EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              ++L      +++I  L   + L +  ++ P LL  ++ G+ S  +Q   +     +K
Sbjct: 68  KYYKELITMKVSVANIPGLFQSVVLESGLIMAPLLLTAVVSGVLSNYMQVGFLFAPEAIK 127

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  K++    G KRIYSI  +V  +KS +KI++VG +    L  N+  +L   + +    
Sbjct: 128 PDLKKLDPLNGFKRIYSIRAIVELLKSILKIVIVGGVTFAVLWLNFDKILRIPALSAGEA 187

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L +  +    + +   + +  L VLD  +    +   ++MSKQ+IKDE K++ G+P+IK+
Sbjct: 188 LSYVGWLTFLMGVSAAVALIFLAVLDYLYQKFDYEKNIRMSKQDIKDEYKKTEGDPLIKS 247

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + K   +     +MM+   +A +IITNPTHYA+AL+Y + + DAP ++AKG +L+A K+R
Sbjct: 248 KIKQKQKEMAMRRMMQEVPKADVIITNPTHYAVALKYDENKMDAPFIIAKGVDLMALKIR 307

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA EH++   E   LAR+L+ QV I+ A+P  F+KAVA+++  +Y  K
Sbjct: 308 QIAKEHDVMTVENRPLARALYDQVEIDQAVPEEFFKAVAEILAYVYKTK 356


>gi|296534146|ref|ZP_06896642.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
 gi|296265522|gb|EFH11651.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
          Length = 353

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 187/360 (51%), Gaps = 23/360 (6%)

Query: 1   MSENDAPDNKTEA----PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--G 54
           M+E + P   +E     PS  K+  A   G  P++REA   +S+     + L +F P  G
Sbjct: 1   MAEKEGPGGDSEEKELDPSEAKLRKARESGEVPLAREAVQLASLCGG-AFALSWFGPALG 59

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            + V     +   S   R   ++S +      L+L  + L   G ++         L Q 
Sbjct: 60  HHMVEQGRSLFALSHEARWQLELSEMAVRAAPLALGVAGLAATGAVVV-------TLAQT 112

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYF 171
             +++   + P+  ++S   G+KR++    LV F ++ +K++  G     ++  +TE   
Sbjct: 113 RLLVSAKPLAPNPMKLSPLRGLKRMFGPQALVEFGRAMLKVVACGLAMWWVSDGITERLP 172

Query: 172 TMLDFISANPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
             L    A P   L   A   + ++L   LL    + ++D+GW   +   K++MS+QE+K
Sbjct: 173 QTL----ALPLEELGGLAAELIERLLRGALLAFTVVALVDLGWVRLRHMQKMRMSRQEMK 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE+K+S G+P I+ R++ IA  R R + M    +AT+I+TNPTHYA+AL Y +  + AP 
Sbjct: 229 DEMKESEGDPHIRGRRRQIALRRSRSRAMAEVPKATVIVTNPTHYAVALSYRRGIDAAPR 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VA+G + +A ++R+ A +H +P+   P LAR+L++ V   + IP   ++AVA+LI  ++
Sbjct: 289 VVARGVDSMAARIRREAEKHGVPVLPNPPLARALYR-VEEGAQIPAEHFEAVAELIALVW 347


>gi|59712446|ref|YP_205222.1| flagellar biosynthesis protein FlhB [Vibrio fischeri ES114]
 gi|59480547|gb|AAW86334.1| flagellar export pore protein FlhB [Vibrio fischeri ES114]
          Length = 376

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 197/361 (54%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E+D  + +TE  +SK+++ A ++G    S+E AS+  S+L C    L +F   +    
Sbjct: 1   MAESDGQE-RTEDATSKRLQQAKDKGQVARSKELASV--SVLVCGAVALMWFGEDVARAL 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-LLLFMMFGIGSYLIQRIPVL 118
             +     S ++ ++ D + ++ ++    ++   LV P  L+L  +F         +  +
Sbjct: 58  FSVMERFFSISREEIYDTNKLLEIVGGALIA---LVFPVFLILITLFVAALAGAAGLGGI 114

Query: 119 NLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173
           + +     P F +++   GIKR++ + + V  +KS +K+ LVG +   +     E+ F +
Sbjct: 115 SFSSEAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQL 174

Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            LD   AN    ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE
Sbjct: 175 SLDTYPAN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K++ G P +K R + + R   + +MM     A +++TNP HY++ALRY Q+++ AP++V
Sbjct: 231 YKETEGKPEVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA EHNI I   P LAR+L+    +   IP   + AVAQ++  I+  
Sbjct: 291 AKGVDHVAMKIREIAREHNIDILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQM 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|157161351|ref|YP_001458669.1| flagellar biosynthesis protein FlhB [Escherichia coli HS]
 gi|170019775|ref|YP_001724729.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739]
 gi|188494102|ref|ZP_03001372.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
 gi|193069902|ref|ZP_03050851.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019]
 gi|194439073|ref|ZP_03071156.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1]
 gi|218695446|ref|YP_002403113.1| flagellar biosynthesis protein FlhB [Escherichia coli 55989]
 gi|253773163|ref|YP_003035994.1| flagellar biosynthesis protein FlhB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161940|ref|YP_003045048.1| flagellar biosynthesis protein FlhB [Escherichia coli B str.
           REL606]
 gi|300822346|ref|ZP_07102487.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7]
 gi|300928913|ref|ZP_07144417.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1]
 gi|301645603|ref|ZP_07245532.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1]
 gi|307138545|ref|ZP_07497901.1| flagellar biosynthesis protein FlhB [Escherichia coli H736]
 gi|331642498|ref|ZP_08343633.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
 gi|157067031|gb|ABV06286.1| flagellar biosynthetic protein FlhB [Escherichia coli HS]
 gi|169754703|gb|ACA77402.1| flagellar biosynthetic protein FlhB [Escherichia coli ATCC 8739]
 gi|188489301|gb|EDU64404.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
 gi|192956802|gb|EDV87256.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019]
 gi|194422032|gb|EDX38036.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1]
 gi|218352178|emb|CAU97917.1| flagellar export pore protein [Escherichia coli 55989]
 gi|242377601|emb|CAQ32357.1| flagellar biosynthesis protein FlhB, subunit of Flagellar Export
           Apparatus and Flagellum [Escherichia coli BL21(DE3)]
 gi|253324207|gb|ACT28809.1| flagellar biosynthetic protein FlhB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973841|gb|ACT39512.1| flagellar biosynthesis protein B [Escherichia coli B str. REL606]
 gi|253978035|gb|ACT43705.1| flagellar biosynthesis protein B [Escherichia coli BL21(DE3)]
 gi|300463067|gb|EFK26560.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1]
 gi|300525229|gb|EFK46298.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7]
 gi|301076135|gb|EFK90941.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1]
 gi|315617894|gb|EFU98492.1| flagellar biosynthetic protein FlhB [Escherichia coli 3431]
 gi|323937138|gb|EGB33418.1| flagellar biosynthetic protein FlhB [Escherichia coli E1520]
 gi|323961935|gb|EGB57534.1| flagellar biosynthetic protein FlhB [Escherichia coli H489]
 gi|323972611|gb|EGB67814.1| flagellar biosynthetic protein FlhB [Escherichia coli TA007]
 gi|331039296|gb|EGI11516.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
 gi|332089613|gb|EGI94715.1| flagellar biosynthetic protein FlhB [Shigella boydii 5216-82]
 gi|332343606|gb|AEE56940.1| flagellar biosynthetic protein FlhB [Escherichia coli UMNK88]
          Length = 382

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|309702103|emb|CBJ01418.1| flagellar biosynthesis protein FlhB [Escherichia coli ETEC H10407]
          Length = 382

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  DMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|206889713|ref|YP_002249863.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741651|gb|ACI20708.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 353

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 189/349 (54%), Gaps = 9/349 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             +TE  + ++ E A  +G  P SRE  L   I   +I+L F FS G + ++   H+  A
Sbjct: 6   QERTEQATPRRREKARQKGEVPRSRE--LTGIIGTWMIFLYFVFS-GTFLISIMQHMKEA 62

Query: 68  SATQRKLEDISHIVFLLTHLSLS---ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
               +  E ++  +  +    +       L I G+LLF +  +  + IQ   +     + 
Sbjct: 63  FTRVKNPEFVASAIITIIKDEIKWYFIQFLPIGGVLLFGVLLV--HFIQTGFLFTGATLV 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P   ++S  +GIK+++S+N L   +K  +K++ +G +I   L ++   +   I  +  +I
Sbjct: 121 PDVSKISPLKGIKKLFSLNALFETIKGILKLVALGIVIYFVLKKDVNILPLLIDMDVKAI 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
              +F  + ++++  L+ +     +D  +   Q+   L+M+KQEIK+E K++ G+P+++ 
Sbjct: 181 AGISFQKIYQLILACLIMLTVFAGIDFAYQRWQYERNLRMTKQEIKEEFKETEGSPMVRA 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R +S+ R   R +MM+   +A ++ITNP H A+ ++Y     +AP +VAKG NL+A++++
Sbjct: 241 RIRSLQREMARKRMMQEVPKADVVITNPLHLAVCIKYDSKNMNAPAVVAKGANLLAERIK 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA    +PI+E   LAR+L++ +P+   IP   YKAVA ++  +Y  K
Sbjct: 301 EIARASGVPIYENKPLARALYR-IPLGEEIPEALYKAVATILATVYKIK 348


>gi|308048765|ref|YP_003912331.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
 gi|307630955|gb|ADN75257.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
          Length = 389

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 189/360 (52%), Gaps = 15/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+END+   +TE  + ++ E A  +G  P S+E    + ++A    +L         + +
Sbjct: 1   MAENDSSQERTEEATPRRREQAREKGQVPRSKELGTAAVLVAAAAGMLMMGGQIGEAMLT 60

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V      L    T+ ++ D+  I  L + +    S L++P L   ++  I  +L   I +
Sbjct: 61  VAKSQFEL----TRAEVFDLGEISELFSRI---LSELMVPVLGFVLVLFIAGFL-GNIGL 112

Query: 118 LNLN----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
             ++       P   ++S   G KR++ +  LV  +KS  K  ++  +    L+ N+  +
Sbjct: 113 GGMSFSWQAAAPKASKMSPLAGFKRMFGLQALVELVKSIAKFAVIALVAWALLSVNFDQI 172

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L   S NP   +  A   + K+ +++   +  + ++D  +       +LKM+KQE+KDE 
Sbjct: 173 LQLSSGNPEGAVRDALALLLKLFVLLCSSLLIIVIIDAPYQLWNHNKQLKMTKQEVKDEY 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ+ G P +K + + + R   + +MM    +A +++ NPTHY++ALRY ++ N+AP++VA
Sbjct: 233 KQTEGKPEVKGKIRQLQREMAQRRMMAEVPKADVVVVNPTHYSVALRYDKSINNAPLVVA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + IA K+R+IA EH +P+   P+LAR+++    ++S IP   + AVAQ++  +Y  K
Sbjct: 293 KGTDEIALKIREIAREHEVPVVSSPALARAVYYSTKLDSPIPEGLFTAVAQILAYVYQLK 352


>gi|320198575|gb|EFW73175.1| Flagellar biosynthesis protein FlhB [Escherichia coli EC4100B]
          Length = 382

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++  +     + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLRFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|94264043|ref|ZP_01287843.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
 gi|94266371|ref|ZP_01290070.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
 gi|93453023|gb|EAT03511.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
 gi|93455554|gb|EAT05741.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
          Length = 356

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 185/360 (51%), Gaps = 15/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT- 59
           M+E  +   KTE P+ +++ +A N+G+   S E    + +LA +I L F        VT 
Sbjct: 1   MAEEQSGQEKTEKPTERRLLEARNKGDVAKSMEVPSAAVLLAGVIVLYFTGEYMFNRVTG 60

Query: 60  ------SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
                 S+LH +  SA    + +I+  V LL +  L       P +L   +  + +  +Q
Sbjct: 61  MMQFYLSNLHDIEISAAS--MPNITRQVMLLIYTVL------WPLMLTVFLAALAANYLQ 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +     + P  +++   +G+ R++S   L N  KS  K  LVG I    +      +
Sbjct: 113 VGFLFTAEKITPKLEKIDPLKGLGRLFSKQTLNNAFKSIAKFSLVGYIAYSEIIRAMPEI 172

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L      P+ IL     T   + +   +    + ++D  +   Q+  K+KM+KQ++KDE 
Sbjct: 173 LPLADKAPYPILVFMVETAFWIFLKCAVLFILIALIDYAFQRWQFMEKMKMTKQDMKDES 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQS G+P +K R +SI     + +MM    +A +++TNPTH A+A++Y      AP ++A
Sbjct: 233 KQSEGDPHVKGRIRSIQMEMAKKRMMAEVPKADVVVTNPTHLAVAIKYDALTMKAPEVLA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG  ++A K++++A EH +P+ E+  LA++L++ V I  +IP   ++AVA+++  +Y+ K
Sbjct: 293 KGAGVVANKIKEVAREHQVPVVEDKPLAQALYQNVEIGGSIPENLFQAVAEVLAYVYNLK 352


>gi|34558296|ref|NP_908111.1| flagellar biosynthesis protein FlhB [Wolinella succinogenes DSM
           1740]
 gi|34484015|emb|CAE11011.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLHB [Wolinella succinogenes]
          Length = 352

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 187/363 (51%), Gaps = 33/363 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI--YLLF-FFSPGIYSVTSDLHV 64
           + KTE PS KKIE A  +GN P S E  +F  +L  LI  Y+LF ++  G   V   +  
Sbjct: 5   EEKTEEPSGKKIEKAREDGNVPKSPEVVVFFGLLVGLILIYVLFTYWVDGTGRVFHQVTP 64

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                  RK       + L   ++L    LVIP  +  M+ G+   + Q   +L+   ++
Sbjct: 65  YFHEEIGRK-----DAISLAISIALEYFLLVIPLFIALMIIGVAGNVSQFGFLLSSKAIE 119

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE----NYFTMLDFISAN 180
           P F +++   G+K ++S+  L++           GT++T+ +       ++  L FI   
Sbjct: 120 PKFSKLNPITGLKNLFSLKKLLD-----------GTLLTVKVLTAFGIGFWVFLSFIGEL 168

Query: 181 PHSILYHAFFTVR-------KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
               L+  F  +R        +  ++LLF   +  +D     +Q++  L+M+KQE+KDE 
Sbjct: 169 TTVSLFPLFDQMRWFKDKALILAAILLLFFFVMASIDFAIKRYQYFKSLRMTKQEVKDEY 228

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  GNP IK + + +       +MM+    A ++ITNPTHYA+ALRY   +  AP ++A
Sbjct: 229 KQMEGNPEIKRKIRQLMMQAAMKRMMQQLPTADVVITNPTHYAVALRYNTQKERAPRVIA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIY 350
           KG + +A ++++IA EH I I E  +LAR L+K   ++  IP   ++AVA++   +YK+ 
Sbjct: 289 KGVDFMAIRIKEIAREHEIQIVENKTLARELYKNADVDKEIPETLFQAVAEVLAYVYKLN 348

Query: 351 HKK 353
            KK
Sbjct: 349 KKK 351


>gi|320194407|gb|EFW69038.1| Flagellar biosynthesis protein FlhB [Escherichia coli WV_060327]
          Length = 382

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ ++   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-ALARPLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|291484192|dbj|BAI85267.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. natto
           BEST195]
          Length = 360

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 184/348 (52%), Gaps = 7/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +D   +G    S + +   S+L   + L+         + S +      
Sbjct: 13  EKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYTE 72

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           +   KL + S++  L   L      ++ P LL+ ++ G+ S  +Q   + +   ++P  +
Sbjct: 73  SLTMKLSE-SNVHTLFVSLLKDMGIILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKLE 131

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++   +G KRIYS+  +V  +KS +KI++VG      L  +Y  +L      P   L   
Sbjct: 132 KLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALS-- 189

Query: 189 FFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            F  +  L M L     L +L   D  +    +   +KMSKQ+IKDE K+S G+PIIK++
Sbjct: 190 -FVSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSK 248

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RK
Sbjct: 249 IKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRK 308

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 309 IAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|191168095|ref|ZP_03029894.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A]
 gi|309796010|ref|ZP_07690423.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7]
 gi|190901893|gb|EDV61643.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A]
 gi|308120460|gb|EFO57722.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7]
          Length = 382

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|259908202|ref|YP_002648558.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|224963824|emb|CAX55326.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|283478130|emb|CAY74046.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163]
          Length = 383

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 191/351 (54%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+ + KTE+P++ ++E A  EG  P SRE    +S+L  +  L   +  G + +   + 
Sbjct: 3   QDSDEEKTESPTAHRLEKAREEGQIPRSRE---LTSLLMLMTGLSILWVGGEW-MGRKMG 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LLA         + D S ++ L+ ++ L A   V+P +   ++  I + ++    V++ 
Sbjct: 59  ALLADGLVFNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ +++S+ +    +K+ +K  LVG +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSVQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPMVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++   + IP+ E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQ 349


>gi|254491439|ref|ZP_05104618.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxidans
           DMS010]
 gi|224462917|gb|EEF79187.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxydans
           DMS010]
          Length = 377

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 194/370 (52%), Gaps = 33/370 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  A + KTE P++K++++A N+G  P SRE +    ++A  + LLF     I S+  
Sbjct: 1   MAEQSAQE-KTEEPTAKRLDEARNKGQVPRSRELTTVMVLIASAVALLFMGKNIIASMAQ 59

Query: 61  DLHVLLASATQRKLED----ISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQR 114
            ++    S T+++L D    I H ++ +  ++   S    V     L     IG +    
Sbjct: 60  VMNKSF-SFTRKELFDPMAMIHHFIYTIETIAFDLSMFLGVTVLAALAAPALIGGW---- 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI---SLTENYF 171
               +   + P  +R+   +G+KRI+    L+   K+  K ILVG I T    S+ +   
Sbjct: 115 --NFSAQAMAPKGERMDPLKGLKRIFGPQGLIELAKALGKFILVGVISTAILWSIRDQLL 172

Query: 172 TM----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
           T+    ++   A+   +    F  +   LI+I L      +    W++++   +L+M+KQ
Sbjct: 173 TLGRQEVNVAMADLGYLTMWVFLAICASLILIALIDVPFQI----WNHNR---QLRMTKQ 225

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE+K++ GNP +K R + +     + +MM+    A ++ITNPTHYA+ALRY QT+  
Sbjct: 226 EVKDEMKETDGNPEVKGRIRRMQVELSQQRMMQDIPSADVVITNPTHYAVALRYDQTKTG 285

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI- 346
           APV+VAKG + I++++R +A  +++PI   P L R+++    I   IP   Y AVAQ++ 
Sbjct: 286 APVVVAKGADFISQQIRLVAEHNDVPILSAPPLTRAVYYSTEIGDEIPSGLYIAVAQVLA 345

Query: 347 ----YKIYHK 352
                + YHK
Sbjct: 346 FVFQLRRYHK 355


>gi|120554898|ref|YP_959249.1| flagellar biosynthesis protein FlhB [Marinobacter aquaeolei VT8]
 gi|120324747|gb|ABM19062.1| flagellar biosynthetic protein FlhB [Marinobacter aquaeolei VT8]
          Length = 378

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSV 58
            END    KTE P+ +++E A  EG    S+E +  + +LA    LL F       I S+
Sbjct: 3   EENDNSQEKTEEPTPRRLEKAKEEGQTARSKELATMAVLLAGAGGLLIFGTSLGASIESI 62

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-GSYLIQRIPV 117
             D  V+  SA    + D  H+   L   +  A+  + P L++ ++  I GS  I  + +
Sbjct: 63  MRDSFVIERSA----IFDTRHMSVQLILAAKEAAWALSPILVMLLIAAIAGSIGIGGL-L 117

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P F R+   +G+ R++S+ +L+  +K+  K+ LV  +  + L      +L   
Sbjct: 118 FSAKAIAPKFNRMDPIKGLGRMFSMRSLIELVKAIAKVGLVMAVAILILNLRTEDLLAIA 177

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                  + H  +T+      +      +  +D+ +  +    KL+M+KQE+KDE K + 
Sbjct: 178 EEPTVPAMEHVLWTLGWSFFFLSCATIAIAAIDVPFQIYDHQKKLRMTKQEVKDEYKDTE 237

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P +K + + + R   + +MM+   +A ++ITNPTHYA+AL+Y Q    APV+VAKG +
Sbjct: 238 GKPEVKGKIRQLQREMAQRRMMQDVPKADVVITNPTHYAVALKYDQKTMGAPVVVAKGAD 297

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A K+ +IA E+ + +   P L R+++    I   IP   Y A+AQ++  ++ 
Sbjct: 298 EVAFKIMEIARENKVEVLRTPPLTRAVYHNTDIGEEIPDGLYMAIAQVLAYVFQ 351


>gi|188592105|ref|YP_001796703.1| flagellar biosynthesis protein flhb [Cupriavidus taiwanensis LMG
           19424]
 gi|170938479|emb|CAP63466.1| FlhB: Flagellar biosynthetic protein. flhB/hrpN/yscU/spaS family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 380

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 180/358 (50%), Gaps = 27/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S +++E A  EG    SRE + F  ++A +         G++++   L   L  
Sbjct: 8   EKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVT--------GLWTLGGHLGRSLNQ 59

Query: 69  ATQRKLEDISHIVF----LLTHLSLSASRLVIPGLLLFMMFGI---------GSYLIQRI 115
             Q  L       F    +L+  +L     ++  L L ++FG+         G +     
Sbjct: 60  VMQGALRFEPATAFDPARMLSRFALMVWDSLLAFLPLLLLFGVAALAAPLLLGGW----- 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V +     P F R+S   G+ R++S ++LV  +K+  K +LVG +    L       + 
Sbjct: 115 -VFSGKSFAPQFSRLSPIAGLGRMFSAHSLVELLKAVAKSLLVGAVGAWVLWRRLPEAIA 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            ++A     L H    V    +++ L +  +  +D+ W Y +++ KL+M+K+E+K E K+
Sbjct: 174 LMNAPVQEALLHMVDLVMFCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKE 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P IKNR +   R+  R +MM    +A +++TNPTH+A+ALRY +    AP +VAKG
Sbjct: 234 SEGDPHIKNRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
              +A ++R +A EH +P+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 294 TGEVAARIRALAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351


>gi|293446267|ref|ZP_06662689.1| flagellar biosynthetic protein FlhB [Escherichia coli B088]
 gi|291323097|gb|EFE62525.1| flagellar biosynthetic protein FlhB [Escherichia coli B088]
          Length = 396

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 16  SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 71

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 72  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 131

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 132 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 191

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 192 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 251

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 252 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 311

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 312 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 364


>gi|149182522|ref|ZP_01860995.1| flagellar biosynthesis protein B [Bacillus sp. SG-1]
 gi|148849782|gb|EDL63959.1| flagellar biosynthesis protein B [Bacillus sp. SG-1]
          Length = 360

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 194/351 (55%), Gaps = 13/351 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+E  + KK +D+  +G    S++ +    +LA  ++L F  S  I  V  DL  +  S
Sbjct: 14  EKSEKATPKKRQDSRKKGQTAKSQDVNTAIILLAVFLFLTFSASY-IGDVIFDLFRI--S 70

Query: 69  ATQRKLEDISHIVFLLTHLSL--SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                + D++   F+L  + +    + L+ P +L+ ++ G+ S  IQ   +     ++P 
Sbjct: 71  FQDYMMMDLTQDSFMLIVMEVLQQVAILLGPIMLVALLAGLFSNYIQVGVMFTAEPLQPK 130

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--FISANPHSI 184
            +++   +G KRI+S+  +V  +KS +KI  VG I  + L  N   +L   F SA   S+
Sbjct: 131 LEKIDPIKGAKRIFSLRAIVELLKSILKIGFVGAITFVILWMNIDEVLGLSFKSAY-DSL 189

Query: 185 LYHAFFTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
              A  TV+  +   + LLF   L+V D  +  + +   ++MSKQ+IKDE K + G+P+I
Sbjct: 190 AAMASLTVQMGIAASLALLF---LSVFDYLYQKYDFEKNIRMSKQDIKDEHKNAEGDPLI 246

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++ K   R     +MM+    A ++ITNPTHYA+AL+Y + ++DAP ++AKG + +A+K
Sbjct: 247 KSKIKQRQREMAMRRMMQEVPEADVVITNPTHYAIALKYDENKSDAPYVIAKGVDYMAQK 306

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ IA EH+I + E   LARSL+    I   IP  F+KAVA+++  +Y  K
Sbjct: 307 IKYIAGEHDIIMVENRPLARSLYDSAEIGDTIPEEFFKAVAEILAYVYRMK 357


>gi|332756021|gb|EGJ86374.1| flagellar biosynthetic protein FlhB [Shigella flexneri 4343-70]
 gi|333003254|gb|EGK22800.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-218]
          Length = 397

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQ  G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQGEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|315296540|gb|EFU55837.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 16-3]
          Length = 382

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ ++   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-ALARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|16129832|ref|NP_416394.1| flagellin export apparatus, substrate specificity protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89108720|ref|AP_002500.1| predicted flagellar export pore protein [Escherichia coli str. K-12
           substr. W3110]
 gi|157156351|ref|YP_001463185.1| flagellar biosynthesis protein FlhB [Escherichia coli E24377A]
 gi|170081536|ref|YP_001730856.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|193065459|ref|ZP_03046528.1| flagellar biosynthetic protein FlhB [Escherichia coli E22]
 gi|194429326|ref|ZP_03061852.1| flagellar biosynthetic protein FlhB [Escherichia coli B171]
 gi|209919306|ref|YP_002293390.1| flagellar biosynthesis protein FlhB [Escherichia coli SE11]
 gi|218554468|ref|YP_002387381.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI1]
 gi|238901095|ref|YP_002926891.1| putative flagellar export pore protein [Escherichia coli BW2952]
 gi|256017916|ref|ZP_05431781.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
 gi|260844290|ref|YP_003222068.1| putative flagellar export pore protein FlhB [Escherichia coli
           O103:H2 str. 12009]
 gi|260855820|ref|YP_003229711.1| putative flagellar export pore protein FlhB [Escherichia coli
           O26:H11 str. 11368]
 gi|260868478|ref|YP_003234880.1| putative flagellar export pore protein FlhB [Escherichia coli
           O111:H- str. 11128]
 gi|293410191|ref|ZP_06653767.1| flagellar biosynthetic protein FlhB [Escherichia coli B354]
 gi|293415195|ref|ZP_06657838.1| flagellar biosynthetic protein FlhB [Escherichia coli B185]
 gi|300819864|ref|ZP_07100049.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1]
 gi|300924972|ref|ZP_07140897.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1]
 gi|300951503|ref|ZP_07165338.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1]
 gi|300956607|ref|ZP_07168886.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1]
 gi|301029330|ref|ZP_07192427.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1]
 gi|301327670|ref|ZP_07220877.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1]
 gi|307314208|ref|ZP_07593818.1| flagellar biosynthetic protein FlhB [Escherichia coli W]
 gi|331668576|ref|ZP_08369424.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|331673405|ref|ZP_08374173.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
 gi|331677765|ref|ZP_08378440.1| flagellar biosynthetic protein FlhB [Escherichia coli H591]
 gi|332278948|ref|ZP_08391361.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
 gi|2494574|sp|P76299|FLHB_ECOLI RecName: Full=Flagellar biosynthetic protein flhB
 gi|1736533|dbj|BAA15696.1| predicted flagellar export pore protein [Escherichia coli str. K12
           substr. W3110]
 gi|1788188|gb|AAC74950.1| flagellin export apparatus, substrate specificity protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157078381|gb|ABV18089.1| flagellar biosynthetic protein FlhB [Escherichia coli E24377A]
 gi|169889371|gb|ACB03078.1| predicted flagellar export pore protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|192926864|gb|EDV81489.1| flagellar biosynthetic protein FlhB [Escherichia coli E22]
 gi|194412633|gb|EDX28929.1| flagellar biosynthetic protein FlhB [Escherichia coli B171]
 gi|209912565|dbj|BAG77639.1| flagellar protein FlhB [Escherichia coli SE11]
 gi|218361236|emb|CAQ98820.1| flagellar export pore protein [Escherichia coli IAI1]
 gi|222033628|emb|CAP76369.1| flagellar biosynthetic protein flhB [Escherichia coli LF82]
 gi|238862415|gb|ACR64413.1| predicted flagellar export pore protein [Escherichia coli BW2952]
 gi|257754469|dbj|BAI25971.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O26:H11 str. 11368]
 gi|257759437|dbj|BAI30934.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O103:H2 str. 12009]
 gi|257764834|dbj|BAI36329.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O111:H- str. 11128]
 gi|260448997|gb|ACX39419.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1]
 gi|284921799|emb|CBG34872.1| flagellar biosynthesis protein FlhB [Escherichia coli 042]
 gi|291432843|gb|EFF05822.1| flagellar biosynthetic protein FlhB [Escherichia coli B185]
 gi|291470659|gb|EFF13143.1| flagellar biosynthetic protein FlhB [Escherichia coli B354]
 gi|299877756|gb|EFI85967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1]
 gi|300316589|gb|EFJ66373.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1]
 gi|300418847|gb|EFK02158.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1]
 gi|300449253|gb|EFK12873.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1]
 gi|300527561|gb|EFK48623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1]
 gi|300845765|gb|EFK73525.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1]
 gi|306906177|gb|EFN36695.1| flagellar biosynthetic protein FlhB [Escherichia coli W]
 gi|312946479|gb|ADR27306.1| flagellar biosynthesis protein FlhB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061186|gb|ADT75513.1| predicted flagellar export pore protein [Escherichia coli W]
 gi|315136523|dbj|BAJ43682.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1]
 gi|323180678|gb|EFZ66223.1| flagellar biosynthetic protein FlhB [Escherichia coli 1180]
 gi|323186344|gb|EFZ71694.1| flagellar biosynthetic protein FlhB [Escherichia coli 1357]
 gi|323378237|gb|ADX50505.1| flagellar biosynthetic protein FlhB [Escherichia coli KO11]
 gi|323940452|gb|EGB36643.1| flagellar biosynthetic protein FlhB [Escherichia coli E482]
 gi|323948234|gb|EGB44222.1| flagellar biosynthetic protein FlhB [Escherichia coli H120]
 gi|324017961|gb|EGB87180.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 117-3]
 gi|324118940|gb|EGC12829.1| flagellar biosynthetic protein FlhB [Escherichia coli E1167]
 gi|331063770|gb|EGI35681.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|331069603|gb|EGI40990.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
 gi|331074225|gb|EGI45545.1| flagellar biosynthetic protein FlhB [Escherichia coli H591]
 gi|332101300|gb|EGJ04646.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
          Length = 382

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|3169254|gb|AAC17834.1| flagellar protein FlhB [Escherichia coli]
          Length = 382

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 197/367 (53%), Gaps = 35/367 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+        
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 56  ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
                    +S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F 
Sbjct: 59  MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFS 116

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
             S             ++P F +++   GIKR++S       +K+ +K ILVG++    L
Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFL 163

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+
Sbjct: 164 WHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSR 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQS G+P +K R + + R+R R +MM    +A +I+ NPTHY++AL+Y + + 
Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMQRARARRRMMADVPKADVIVNNPTHYSVALQYDENKM 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++
Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENNVPTLEAPRLARALYRHAEIGQQIPGQLYAAVAEVL 343

Query: 347 YKIYHKK 353
             ++  K
Sbjct: 344 AWVWQLK 350


>gi|332140595|ref|YP_004426333.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550617|gb|AEA97335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 374

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 192/356 (53%), Gaps = 23/356 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHVL 65
            KTE P+ KK++DA  +G    SRE S    ++   +  LF   + +  ++ +T  + +L
Sbjct: 6   EKTEDPTGKKLDDARKKGQLARSRELSTTLVLIVSAVMFLFVGGWIAESVFKLTRRMFIL 65

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN---- 121
               ++ +  DI+H+ F     + SA   V P +LL+M+  + + +   I +   N    
Sbjct: 66  ----SRDETYDITHM-FGAWGEAFSA---VGPAVLLYMVVAMIAGIYGSIALGGFNFTWE 117

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISL---TENYFTMLDFI 177
             KP   ++S  +G KR++  N LV  +KS  K++ ++G  I   L    E     ++  
Sbjct: 118 GAKPKGSKMSPIQGFKRMFGTNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMELY 177

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             N    L+HA   ++   ++++  +  + ++D+ +  ++   ++KM+KQE+KDE K + 
Sbjct: 178 PGN----LFHAMDILKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAE 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P++K R + +       +MM+   +A +++TNPTH+++A++Y +    APV+VAKG +
Sbjct: 234 GDPMVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGIRAPVVVAKGAD 293

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A  +RKIA  +++P+   P LAR++F    ++  IP   + AVAQ++  +Y  K
Sbjct: 294 ELAMHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349


>gi|312969924|ref|ZP_07784107.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70]
 gi|310338209|gb|EFQ03298.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70]
          Length = 382

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|300694355|ref|YP_003750328.1| flagellar export pore protein [Ralstonia solanacearum PSI07]
 gi|299076392|emb|CBJ35708.1| flagellar export pore protein [Ralstonia solanacearum PSI07]
          Length = 389

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 183/364 (50%), Gaps = 29/364 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE+ S +++E A  EG+ P SRE   F         LL   + G++ +  
Sbjct: 1   MSE-DSDLEKTESASPRRLEQAREEGDVPQSRELVSF--------VLLAVAAGGLWVMGE 51

Query: 61  DLHVLLASATQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQR 114
            +    +S   R LE    D +       ++      L  V+ GL+L ++    S L   
Sbjct: 52  SIVRTASSFLARCLEFHRYDYTRAQAQWQYVGAQFGPLAMVLAGLMLMLVLASLSPLALT 111

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              ++   + P   R+    G+KR++S+  L+   +   K+ LVG +        ++ +L
Sbjct: 112 RGAISFKPLTPDISRLIGLHGLKRMFSVQGLLELPRLLAKLALVGGV-------GWWLIL 164

Query: 175 DFISAN---PHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQ 227
            +  A    P   L         V  +  L +A + +L    D+  +  Q+  K +M+K+
Sbjct: 165 HYRDAFVELPRGDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKE 224

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E++ E ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  
Sbjct: 225 EVRKEHRESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGG 284

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP ++AKG +L+A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++ 
Sbjct: 285 APRVLAKGADLVAAKIRELGAEHRIPVLEAPPLARALYRHTEIGHQIPAALYAAVAEVLA 344

Query: 348 KIYH 351
            +Y 
Sbjct: 345 YVYQ 348


>gi|291283062|ref|YP_003499880.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str.
           CB9615]
 gi|209767298|gb|ACI81961.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|209767304|gb|ACI81964.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|290762935|gb|ADD56896.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320641734|gb|EFX11122.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           G5101]
 gi|320647094|gb|EFX15927.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str.
           493-89]
 gi|320652377|gb|EFX20675.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str.
           H 2687]
 gi|320657978|gb|EFX25740.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658551|gb|EFX26245.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668449|gb|EFX35276.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 382

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|167587841|ref|ZP_02380229.1| flagellar biosynthesis protein FlhB [Burkholderia ubonensis Bu]
          Length = 403

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 180/361 (49%), Gaps = 33/361 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI------------- 55
           +KTEA + ++ E A  EG    SRE + F+ +LA   Y  +  +  I             
Sbjct: 8   DKTEAATPRRREKAREEGQVARSRELASFA-LLASGFYGTWLLAGPIGRHLQTMLRGAFT 66

Query: 56  --YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
               +  D + +L SA    LE ++ +  LL  + ++A         L     +G +LI 
Sbjct: 67  FDRGIAFDTNRMLTSAGSVSLEGLAALAPLLAMMGVAA---------LLAPMALGGWLIS 117

Query: 114 -RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
            +   L L+ + P         G+ RI+S+   +    S  K ++VG I  I++  +   
Sbjct: 118 SKTFELKLDRLNPIT-------GLGRIFSVQGPIQLGMSLAKTLVVGGIGGIAIWRSKDE 170

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +L       H+ L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E
Sbjct: 171 LLGLAMQPLHAALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKRE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            +++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y      AP +V
Sbjct: 231 HRENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGAMRAPKVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  
Sbjct: 291 AKGVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|77918767|ref|YP_356582.1| flagellar biosynthesis protein FlhB [Pelobacter carbinolicus DSM
           2380]
 gi|77544850|gb|ABA88412.1| flagellar biosynthetic protein FlhB [Pelobacter carbinolicus DSM
           2380]
          Length = 351

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 188/353 (53%), Gaps = 10/353 (2%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD-LH 63
           D+   +TE  + K+  D   +G    S+E    ++++   + L  F++P  +   SD LH
Sbjct: 3   DSDQERTEQATGKRRADFRQKGQVAQSKEVHT-AALMTGTLLLWTFYAPLFWRTLSDMLH 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L + A   ++  +S  V LL  L    + L+ P +L  ++ GI S  +Q   +     +
Sbjct: 62  HLWSLAGDFEVTPVSA-VMLLGQLGQKIALLLAPIMLTTLVIGILSSYLQVGWLFTTKPL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PH 182
            P F +++   G+ ++ S  + +  +KS +K+ LVG +    +   +   LD +  +   
Sbjct: 121 APDFSKMNPVPGLAKLISKRSFIEVVKSLLKVFLVGVVAYKVILAEFGQALDLVDMDIND 180

Query: 183 SILYHAFFTVRKVL--IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           S++Y A    R +L    +++ +A L  L + W   Q   K+KM+KQE K+E K+S G+P
Sbjct: 181 SVVYLARVAARILLRTCGVMILLALLDFLFVRWEMEQ---KMKMTKQEQKEEHKESEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +S+     R +MM    +A ++ITNPTH ++AL Y ++   AP +VAKG + +A
Sbjct: 238 QIKARIRSMQMQAARRRMMAEVPKADVVITNPTHLSVALAYDRSRMSAPQIVAKGADAVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA EH +P+ E   +AR LFK V +   +P   ++AVA+++  +Y  K
Sbjct: 298 MRIREIAREHKVPLVENKPVARVLFK-VDLGKDVPEEMFQAVAEILAYVYGLK 349


>gi|296274004|ref|YP_003656635.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM
           7299]
 gi|296098178|gb|ADG94128.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM
           7299]
          Length = 350

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 196/350 (56%), Gaps = 18/350 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P++KK+E A  EGN P S E    + +L   +Y+LF+ S   Y     L + + +
Sbjct: 6   DKTEEPTAKKLEKARGEGNVPKSGEVVGAAILLFGTVYMLFW-STYTYDSIKKLMIYIFN 64

Query: 69  ATQRKLE-----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
              ++L      ++++ +      SL+   LV+  +LL ++  +  +     P+      
Sbjct: 65  KIGQELTSTDYYNMTNAIITTIFYSLAPFFLVV--ILLAIILNVVQFGFLTNPI------ 116

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K  F++++   G+K ++S+  L+   K   K+ L+  ++TI     Y   +  +  +  S
Sbjct: 117 KLKFEKLNPVSGLKGLFSLKKLLEATKLLAKLTLIVFVMTILFGLTYKGFIAMMDKDITS 176

Query: 184 ILYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            L  A FT+    +  +LFI  L  ++D  ++ H ++  LKMSK+E+KDE K   G+P +
Sbjct: 177 SL-DAMFTLLLYFVGAILFIVILFAIIDYFFTRHYYFKSLKMSKEEVKDEHKNMEGDPKV 235

Query: 243 KNRQKSIARSRIRHKMMEATSR-ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           K + K I + ++ ++ M A+++ A ++ITNPTHY++AL+Y    N AP +VAKG + +A 
Sbjct: 236 KAKIKGI-QYKLHYERMRASAKDADVVITNPTHYSVALQYDSAVNSAPKVVAKGIDFLAL 294

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           K+R +A E+ IPI E P+LAR+L+ Q+ I+  IP  FY+A+A++   ++ 
Sbjct: 295 KIRDVAKENKIPIIENPALARALYDQIQIDQEIPGEFYQAMAEVFSYVFE 344


>gi|237653600|ref|YP_002889914.1| flagellar biosynthesis protein FlhB [Thauera sp. MZ1T]
 gi|237624847|gb|ACR01537.1| flagellar biosynthetic protein FlhB [Thauera sp. MZ1T]
          Length = 380

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 188/362 (51%), Gaps = 29/362 (8%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTS 60
            D+   KTE PSS+++E A  EG  P SRE S F   +   A L+ L  + +  +  +  
Sbjct: 3   EDSDLEKTEDPSSRRLEQAREEGQVPQSRELSTFLVTMTGAATLLLLGGWMAGRVMGLFR 62

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-----------MMFGIGS 109
           D       A  R+     +++  +    L  + L +  + LF           M+ G   
Sbjct: 63  D-----GFAFDRRAAFDENVMLDMLERMLGGALLTL--MPLFVALMVAAVAAPMVLG--- 112

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
            L+    VL L      F R+   +G+ R++S++ LV   K+ +K +LVG +  + L   
Sbjct: 113 GLVFAPKVLGLK-----FDRLDPLQGLGRMFSLHGLVEMFKAILKSVLVGGVAALVLWYE 167

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  +   +     + +     T+    ++I+L +  L  +D+ +   Q++ KL+M+K+E+
Sbjct: 168 FEHLFSLMVEPLETGMADFSATIVFATLLIVLSLGLLAAIDVPFQLWQYHKKLRMTKEEV 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K E K+  G+P+IK R +++ R   R +MM    +A +++TNPTH+++AL+Y   +  AP
Sbjct: 228 KRESKEQEGDPMIKGRIRAMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAAKMGAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V+VAKG+  +A K+R+IA E  +P+ E P LAR+L+K   +  AIP   Y AVA+++  +
Sbjct: 288 VVVAKGRGELALKIREIAKESEVPLLEAPPLARALYKHCELEQAIPAALYTAVAEVMAYV 347

Query: 350 YH 351
           Y 
Sbjct: 348 YQ 349


>gi|310767884|gb|ADP12834.1| Flagellar biosynthesis protein FlhB [Erwinia sp. Ejp617]
          Length = 383

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 190/351 (54%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+ + KTE+P++ ++E A  EG  P SRE    +S+L  +  L   +  G + +   + 
Sbjct: 3   QDSDEEKTESPTAHRLEKAREEGQIPRSRE---LTSLLMLMTGLSILWVGGEW-MGRKMG 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LLA         + D S ++ L+ ++ L A   V+P +   ++  I + ++    VL+ 
Sbjct: 59  ALLADGLVFNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ +++S  +    +K+ +K  LVG +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSAQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPIVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++   + IP+ E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQ 349


>gi|301018276|ref|ZP_07182787.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1]
 gi|331663378|ref|ZP_08364288.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143]
 gi|300399746|gb|EFJ83284.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1]
 gi|331059177|gb|EGI31154.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143]
          Length = 382

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 198/366 (54%), Gaps = 33/366 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFF------------ 50
           +D  D+KTEAP+  ++E A  EG  P SRE  SL   IL   + +++F            
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLL--ILVVGVSVIWFGGVSLARRLSGM 59

Query: 51  FSPGIY---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
            S G++   S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F  
Sbjct: 60  LSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSG 117

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
            S             ++P F +++   GIKR++S       +K+ +K ILVG++    L 
Sbjct: 118 KS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLW 164

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
            ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q
Sbjct: 165 HHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQ 224

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           +I+DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  
Sbjct: 225 DIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMS 284

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++ 
Sbjct: 285 APKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLA 344

Query: 348 KIYHKK 353
            ++  K
Sbjct: 345 WVWQLK 350


>gi|116694207|ref|YP_728418.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha H16]
 gi|113528706|emb|CAJ95053.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
          Length = 380

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 180/358 (50%), Gaps = 27/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S +++E A  EG    SRE + F  ++A +         G++++   L   L  
Sbjct: 8   EKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVT--------GLWTLGGHLGRSLNQ 59

Query: 69  ATQRKLEDISHIVF----LLTHLSLSASRLVIPGLLLFMMFGI---------GSYLIQRI 115
             Q  L       F    +L+  ++     ++  L L  +FG+         G +     
Sbjct: 60  VMQGALRFEPATAFDTSRMLSRFAMMVWDSLLAFLPLLFLFGVAALAAPLLLGGW----- 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V +     P F R+S   G+ R++S ++LV  +K+  K +LVG++    L       + 
Sbjct: 115 -VFSGKSFAPQFSRLSPLAGLGRMFSAHSLVELLKAVAKSLLVGSVGAWVLWRRLPEAIA 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            ++A     L H    V    +++ L +  +  +D+ W Y +++ KL+M+K+E+K E K+
Sbjct: 174 LMNAPVQEALLHMVDLVMYCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKE 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P IK R +   R+  R +MM    +A +++TNPTH+A+ALRY +    AP +VAKG
Sbjct: 234 SEGDPHIKGRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
              IA ++R++A EH +P+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 294 TGDIAARIRELAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351


>gi|332994108|gb|AEF04163.1| flagellar biosynthesis protein [Alteromonas sp. SN2]
          Length = 376

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 200/364 (54%), Gaps = 24/364 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----I 55
           M+++D+ + KTE P+ KK+ED   +G    SRE S  ++++  +   +F F  G     +
Sbjct: 1   MADSDSSE-KTEDPTGKKLEDTRKKGQIARSRELS--TTLVLVVSAFMFLFVGGWIAESV 57

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQ 113
           + +T  + VL    ++ +  D +H   +      + S + +P +LL+M   +  G Y   
Sbjct: 58  FKLTQRMFVL----SRDETYDTTH---MFGAWGEAISTVSVP-VLLYMTVAMLAGIYGSI 109

Query: 114 RIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT--EN 169
            +   N       FK  ++S   G KR++ +N LV  +KS  K++++  +   +L   E+
Sbjct: 110 ALGGYNFTWEGAKFKGSKMSPLSGFKRMFGMNGLVELIKSIAKVVVIVGMALGALLFFED 169

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
               LD +   P +I +HA   ++   IM++  +  + ++D+ +  ++   ++KM+KQE+
Sbjct: 170 EALHLD-LELYPGNI-FHALDMLKWAFIMLVCGMIPIALIDVPYQIYKHNKEIKMTKQEV 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           KDE K S G+P++K R + +       +MM+   +A +++TNPTHY++A++Y  + N AP
Sbjct: 228 KDERKNSEGDPLVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHYSVAIKYDDSGNRAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V+VAKG + +A  +RKIA  +++P+   P LAR+++    I+  +P   + AVAQ++  +
Sbjct: 288 VVVAKGTDELAMHIRKIATANDVPLIPSPMLARAVYYSTEIDGEVPNALFMAVAQVLAHV 347

Query: 350 YHKK 353
           Y  K
Sbjct: 348 YQLK 351


>gi|194434131|ref|ZP_03066400.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012]
 gi|194417675|gb|EDX33775.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012]
 gi|332095083|gb|EGJ00117.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 155-74]
          Length = 382

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   +   + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVPVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTVFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|149928479|ref|ZP_01916714.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105]
 gi|149822813|gb|EDM82064.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105]
          Length = 376

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 192/352 (54%), Gaps = 18/352 (5%)

Query: 8   DNKTEAPSS-KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
           D + + P+S +KI  A  EGN P SRE      +LA  + LL+     + S +  L    
Sbjct: 6   DQEKDLPASEQKIRKAREEGNLPRSRELGGGVVLLAG-VGLLYTMGGELVSQSEKLMRQG 64

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH---- 122
               + +  D  H+      +   +  ++IP   LF++  + + ++  I V   N     
Sbjct: 65  LVLDRAQAFDTKHMGLKWVSMLQESLFILIP---LFLVVVVAA-IVSNIAVGGFNWSTKP 120

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISAN 180
           ++P   +++  +G+K I+S+N L   +K+ +K +++G +  + L ++   FT L   SA 
Sbjct: 121 LEPKLSKLNPVKGLKNIFSVNGLAELVKAILKTVVLGGVGYLLLMQDLGEFTQL---SAM 177

Query: 181 P--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           P  H +   A  T++  LI+ + F+  +++ D+ +   ++Y  L+M+ +E+K E K+S G
Sbjct: 178 PLEHGMAETARITIKDALILAIAFLLIVSI-DVPYQLWRYYKGLRMNLEELKRESKESDG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K + KS+ R   R +MM +   A +I+TNPTHY++AL+Y +    AP +VAKG   
Sbjct: 237 DPHLKGKIKSMQREAARRRMMASVPNADVIVTNPTHYSVALKYDKDGKGAPRVVAKGIGP 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +A K+R++A E+ +P+ E P LAR+L+  V +   IP   Y AVA+L+  +Y
Sbjct: 297 LALKIREVAQENKVPLVEAPPLARALYSNVELEQEIPGALYTAVAKLLAYVY 348


>gi|313896030|ref|ZP_07829584.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975455|gb|EFR40916.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 374

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 183/356 (51%), Gaps = 19/356 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +         + L+ FFS  +  +   +++ 
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELN------TAFVLLIGFFS--LKLLWDSIYLA 75

Query: 66  LASATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           +AS T           D  +IV L   +    ++  +P +L  M+ G+     Q    LN
Sbjct: 76  IASYTTYVFANLNQPVDTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQ--VGLN 133

Query: 120 LNHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            N     FK   L    G  RI+S  +LV   KSF KI+++G  +   + E    M  F+
Sbjct: 134 FNTEAIEFKLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFM 193

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  + L      + ++  +++  I  + V D G+   Q    LKM+KQE+KDE+KQ+ 
Sbjct: 194 FFDLTTSLALVAEIIFRMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTE 253

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK + +   R     +MM+   +A +IITNPTHYA+AL Y +    AP ++AKGQ+
Sbjct: 254 GDPQIKGKIRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAY-EKGMVAPTVLAKGQD 312

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A++++++  E  +PI E   LAR+L+  V +  A+P   Y+AVA+++  +Y  K
Sbjct: 313 LVAQRIKELGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368


>gi|327399034|ref|YP_004339903.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411]
 gi|327181663|gb|AEA33844.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411]
          Length = 353

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 196/354 (55%), Gaps = 14/354 (3%)

Query: 7   PD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV- 64
           PD +KTE  + K+ ++A  EG    S E +    +LA +++  +F +        D+ + 
Sbjct: 2   PDEDKTEQATPKRRQEAREEGRVAKSVELNTAFLMLAAVVFF-YFTASNFGEKIKDVLIY 60

Query: 65  --LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV---LN 119
              LAS  +  L+    +V  ++    S   +++P    F++    ++LI  + V   + 
Sbjct: 61  FFTLASNFEITLDSFDILVKRISGFMFS---ILLP---FFIVMATIAFLINVVQVGFYIT 114

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++  F +++   G K ++S+ +    +KS +K  ++G I+ I + +N  +       
Sbjct: 115 PKAMEIKFDKINPVNGFKNMFSLRSFGELVKSLLKASVMGYILWIFIQKNINSWSSLSKT 174

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           N  ++      ++  V++ IL+FI  + +LD  +  + +   + M+KQE+KDE KQ  G+
Sbjct: 175 NQTAVFLVMIKSMFLVVVYILIFIIFMAILDYLFQKYTFEKSIMMTKQEVKDEYKQMEGD 234

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK + +S+     R +MME   +A ++ITNPTHYA+AL+Y      AP +VAKG NLI
Sbjct: 235 PKIKQKIRSMQMEMTRKRMMEEVKKADVVITNPTHYAVALKYDSATMAAPKVVAKGINLI 294

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           AKK+++IA E+++PI E+P LARSL+++V ++  IP   Y+AVA+++  ++  K
Sbjct: 295 AKKIKEIAKENDVPIVEKPELARSLYEKVKLDREIPEELYQAVAEILAYVFKLK 348


>gi|149194192|ref|ZP_01871290.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus
           TB-2]
 gi|149136145|gb|EDM24623.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus
           TB-2]
          Length = 351

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 188/353 (53%), Gaps = 18/353 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+E+A  EGN   S E S F  +L   I +LF+     + +        + 
Sbjct: 6   EKTEEPTPKKLEEAKKEGNIAKSMEVSGFVVLLVGSIIILFYLKYVTFYLEEYFRYFYSY 65

Query: 69  ATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                +E   +I F L+   +     L+ P  +  ++ GI   ++Q   +  +  + P  
Sbjct: 66  IG---VELTKNIFFNLIIKSTYYFFILIAPIFIALILAGIIGNVMQFGFLFTIKPILPKL 122

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           ++++  +G+KR++S+  LV  +K+ +K   +  ++  +L  N      F+   P   L +
Sbjct: 123 EKINPIKGLKRLFSVKTLVEGLKTTLKT-FIAFLVGFTLFYN------FLQEIPRLELMN 175

Query: 188 AFFTVR----KVLIMILLFIATL---TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            F  ++    K +I+I   +       ++D  +  + +   L+MSKQEIKDE KQ+ GNP
Sbjct: 176 FFEQLKWFEDKAVILIFSLLGVFFIFAIIDFTYQKYTYKKSLRMSKQEIKDEYKQTEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MM    +A ++ITNPTHYA+A+RY +T+++AP +VAKG + +A
Sbjct: 236 EVKAKIRQLQREMAKKRMMAEVPKADVVITNPTHYAVAIRYDKTKDEAPRVVAKGVDNLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA E  + I E P LAR L+K V +   IP   +KAVA+++  +Y  K
Sbjct: 296 IKIKEIAREAGVMIVENPPLARELYKSVEVGEIIPQKLFKAVAEVLAYVYRAK 348


>gi|302670739|ref|YP_003830699.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus
           B316]
 gi|302395212|gb|ADL34117.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus
           B316]
          Length = 383

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 187/368 (50%), Gaps = 27/368 (7%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSV 58
           +E+     K+E P+SKK++DA  EG    S+E +   S+LA  + L F   F      ++
Sbjct: 24  AEDANGAEKSEEPTSKKLDDARKEGQVAKSQEVATAFSLLAFFLILRFGYGFMGENFEAI 83

Query: 59  TSDLH--VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
              ++  +   +        +++I   +    L+   +  P  +   +      L+Q   
Sbjct: 84  FGSVYNTIPFVARMYDGFLPVNYIYSTINKALLTVLLICAPFFIFGFLIAFLCDLVQVGF 143

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
                 ++P   +++   G+K+I+S   + + +KS +K++++G +I           + +
Sbjct: 144 KPTSKPLQPKLSKLNPISGMKKIFSTRKIFDLLKSILKLVIMGVVI-----------ISY 192

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTV-----------LDIGWSYHQWYSKLKMS 225
            S    SI       +++ + ++  FI  L +            D+ +   +++  + M+
Sbjct: 193 FSNRQESIFLLYDIPLKQAIGLMGSFIIDLGIRIAAAYMIIAFADLIYQRRKFHKDMMMT 252

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+KDE K + GNP +K+ QK       R +MM+   +A ++ITNPTHYA+A+RY   E
Sbjct: 253 KQEVKDEFKNTEGNPEVKSAQKRRMMQASRRRMMQELPKADVVITNPTHYAVAIRYDAEE 312

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            DAP++VAKG + IA+K++++A E+N+ I E   LAR L+  V I   +PP  YKAVA++
Sbjct: 313 ADAPIVVAKGADYIAQKIKEVAKENNVEIVENKPLARMLYANVEIGEMVPPELYKAVAEV 372

Query: 346 IYKIYHKK 353
           +  +YH K
Sbjct: 373 LAYVYHLK 380


>gi|281178949|dbj|BAI55279.1| flagellar protein FlhB [Escherichia coli SE15]
          Length = 382

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR +S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRTFSAQTGAELLKAILKTILVGSVTGFFLWYHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|296157469|ref|ZP_06840304.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1]
 gi|295892241|gb|EFG72024.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1]
          Length = 406

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 186/366 (50%), Gaps = 32/366 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+ + ++++ A  EG    SRE S F+     L+   FF   G++ ++ 
Sbjct: 1   MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-----LLAAGFF---GVWGMSG 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-----------LLLFMMFGIGS 109
            +           L+ +    F   H     +R ++ G           LL  + F   +
Sbjct: 52  SIG--------EHLQGMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAA 103

Query: 110 YLIQRIPV----LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
            L   + +    L+   ++P F R++   G+ +++SIN  +    S VK ++VG I   +
Sbjct: 104 ALFAPMALGGWQLSSKGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTA 163

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +      +L   +      L +    +     M +  +  +  LD+ +   Q++ KL+MS
Sbjct: 164 IWNRREEILALATQPLQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMS 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E+K E ++S G+P +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E
Sbjct: 224 KEEVKREHRESEGDPHVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGE 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG NL+A ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AVA++
Sbjct: 284 MRAPKVVAKGVNLVAARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEV 343

Query: 346 IYKIYH 351
           +  +Y 
Sbjct: 344 LAWVYQ 349


>gi|320529415|ref|ZP_08030503.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399]
 gi|320138381|gb|EFW30275.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399]
          Length = 374

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 183/356 (51%), Gaps = 19/356 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +         + L+ FFS  +  +   +++ 
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELN------TAFVLLIGFFS--LKLLWDSIYLA 75

Query: 66  LASATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           +AS T           D  +IV L   +    ++  +P +L  M+ G+     Q    LN
Sbjct: 76  IASYTTYVFANLNQPVDTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQ--VGLN 133

Query: 120 LNHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            N     FK   L    G  RI+S  +LV   KSF KI+++G  +   + E    M  F+
Sbjct: 134 FNTEAIEFKLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFM 193

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  + L      + ++  +++  I  + V D G+   Q    LKM+KQE+KDE+KQ+ 
Sbjct: 194 FFDLTTSLALVAEIIFQMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTE 253

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK + +   R     +MM+   +A +IITNPTHYA+AL Y +    AP ++AKGQ+
Sbjct: 254 GDPQIKGKIRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAY-EKGMVAPTVLAKGQD 312

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A++++++  E  +PI E   LAR+L+  V +  A+P   Y+AVA+++  +Y  K
Sbjct: 313 LVAQRIKELGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368


>gi|23099029|ref|NP_692495.1| flagellar biosynthesis protein FlhB [Oceanobacillus iheyensis
           HTE831]
 gi|22777257|dbj|BAC13530.1| flagella-associated protein [Oceanobacillus iheyensis HTE831]
          Length = 359

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 184/349 (52%), Gaps = 13/349 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK  D   +G    S++ +    +L C I L  F S  +  +T         
Sbjct: 13  EKTEKATPKKRLDERKKGRVAKSQDVNTALLLLGCFIALFVFGSYMLQYMTGFFEKSFTE 72

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L +  ++  +    SL A  ++ P +++ ++ G+ + L+Q   + +   +K   K
Sbjct: 73  YIHWDLTE-KNVQLMFNSASLDAGMMLAPIMIIAIITGMAANLVQVRFLFSTEPLKFDLK 131

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVG--TIITISLTENYFTMLDFISANPHSILY 186
           ++   +G KRI+SI  LV F+KS +KI+ VG  T   I + ++   M  F+ A       
Sbjct: 132 KIDPIQGAKRIFSIRALVEFLKSMLKIVFVGIVTFYVIWIFKDDMLMTAFLDAKGA---L 188

Query: 187 HAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             F TV  ++    I++L+F+A   + D  +    +   ++MSKQ+IKDE K   G+P+I
Sbjct: 189 GFFATVTAIMGFAAIILLVFLA---LFDYWYQKFDFEKNIRMSKQDIKDEYKNVEGDPLI 245

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++ K   R     +MM     A +IITNPTHYA+A++Y +++ +AP ++AKG + IA+K
Sbjct: 246 KSKIKEKQRQMATRRMMSEVPNADVIITNPTHYAVAIKYDESKANAPYILAKGTDQIAQK 305

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +++IA  H++ + E   LAR L   V I   IP  +++AVA+++  +Y 
Sbjct: 306 IKEIAKNHDVIMVENRPLARGLHDAVEIGEIIPEAYFQAVAEVLAYVYR 354


>gi|197334476|ref|YP_002156665.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11]
 gi|197315966|gb|ACH65413.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11]
          Length = 376

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 197/361 (54%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E+D  + +TE  +SK+++ A ++G    S+E AS+  S+L C    L +F   +    
Sbjct: 1   MAESDGQE-RTEDATSKRLQQAKDKGQVARSKELASV--SVLVCGAVALMWFGEDVARAL 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-LLLFMMFGIGSYLIQRIPVL 118
             +     S ++ ++ D + ++ ++    ++   LV P  L+L  +F         +  +
Sbjct: 58  FSVMERFFSISREEIYDTNKLLEIVGGALIA---LVFPVFLILITLFVAALAGAAGLGGI 114

Query: 119 NLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173
           + +     P F +++   GIKR++ + + V  +KS +K+ LVG +   +     E+ F +
Sbjct: 115 SFSSEAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQL 174

Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            LD   AN    ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE
Sbjct: 175 SLDTYPAN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K++ G P +K R + + R   + +MM     A +++TNP HY++ALRY Q+++ AP++V
Sbjct: 231 YKETEGKPEVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA EHNI I   P LAR+L+    +   IP   + AVAQ++  I+  
Sbjct: 291 AKGVDHVAMKIREIAREHNIYILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQM 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|215487092|ref|YP_002329523.1| flagellar biosynthesis protein FlhB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967082|ref|ZP_07781300.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75]
 gi|215265164|emb|CAS09552.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312288546|gb|EFR16448.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75]
          Length = 382

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQ  G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQREGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|292488559|ref|YP_003531443.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|292899731|ref|YP_003539100.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946]
 gi|291199579|emb|CBJ46696.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946]
 gi|291553990|emb|CBA21035.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|312172704|emb|CBX80960.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 383

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 191/351 (54%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+ + KTE+P++ ++E A  EG  P SRE    +SIL  +  L   +  G + +   + 
Sbjct: 3   QDSDEEKTESPTAHRLEKAREEGQIPRSRE---LTSILMLITGLSILWVGGEW-MGRKMG 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LLA         + D S ++ L+ ++ L A   V+P +   ++  I + ++    VL+ 
Sbjct: 59  ALLADGLVFNHSVVSDSSQMLRLVANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ +++S  +    +K+ +K  LVG +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDPGKMNPVKGLAKLFSAQSASELLKAVLKATLVGIVCGLYIWHHWAGMLHLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PLIALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP ++AKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVLAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++A E+ IPI E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 299 LRIRELAAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQ 349


>gi|183598609|ref|ZP_02960102.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827]
 gi|188020787|gb|EDU58827.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827]
          Length = 383

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 12/354 (3%)

Query: 4   NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----IYS 57
           +D  D  KTE P+  K + A ++G    S+E S    +LA +   L + S G     +  
Sbjct: 2   SDESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVS--LLWLSGGHLADELRQ 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +     +      Q  L  +S+   ++   +L A   VI GL L    GI +  +    +
Sbjct: 60  IFRQGFIFDGHYIQNTLLMVSYFGRMVGE-ALFALLPVIGGLALV---GISASSLVGGLL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            N   +K   K+++   G+KRI+S+N L    K+ +K + VG    I L +N+ ++L  +
Sbjct: 116 FNSKLIKFDLKKLNPISGLKRIFSMNALSELFKAILKSLFVGLGAAIFLWQNWSSLLHLV 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           + +P + L +A   V     +I+  +  +   D+ + +     KL+MS+QEIKDE KQ  
Sbjct: 176 TESPVTALGNAMHKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK + +   R+  R++MM    +A +I+TNPTHYA+AL+Y      AP ++AKG  
Sbjct: 236 GDPQIKAKIRQQQRAIARNRMMADVPQADVIVTNPTHYAVALKYDDKRMGAPKVLAKGAG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +IA+++++I  EH I   E P LAR+L++   I  +IP   Y AVA+++  +Y 
Sbjct: 296 VIAQRIKEIGQEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQ 349


>gi|222053619|ref|YP_002535981.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32]
 gi|221562908|gb|ACM18880.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32]
          Length = 354

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 194/357 (54%), Gaps = 10/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFFFSPGIY 56
           MSE D   +KTE P++KK+ +A  +GN P SR+     SL S I+A  +   F  S    
Sbjct: 1   MSEED-KHSKTEQPTNKKVSEAKEKGNIPRSRDLTSTLSLTSGIIALYVTGGFMAS---- 55

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            + S    + AS + ++  + + I  L+  L L+ + ++ P LL+ ++  + + + Q   
Sbjct: 56  KLKSSSAEIFASLSTKEFTE-AGIYMLMLKLFLTMTLVLAPFLLIVIVASLAAEVSQGGI 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +   +     +++   GIKR+++ + +V  +KSF+KII+VG +    + +   +++  
Sbjct: 115 STSFEKIGFDLDKLNPVHGIKRLFNKDAVVEMLKSFLKIIIVGYMAYKVMRDEVDSVIYL 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +  +  +I         K++I     +  L VLD+ +   ++   LKM+KQE+KDE K +
Sbjct: 175 VDMDIPAIAEFVSHISFKLVIHTCGVLFILAVLDLAFVKWRFIENLKMTKQEVKDENKDA 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK + K     + R +M      A +++TNPTH+A+AL+Y + +  APV++AKG 
Sbjct: 235 EGDPHIKGKIKQKQYDQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGA 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A+K+++IA E NI + E   LAR LF QV     IP   Y AVA+++  +Y  K
Sbjct: 295 DFLAQKIKEIARESNITLVENRPLARELFAQVKEGEEIPEALYAAVAEILAYVYKLK 351


>gi|114777581|ref|ZP_01452562.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1]
 gi|114552052|gb|EAU54569.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1]
          Length = 355

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 185/356 (51%), Gaps = 6/356 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      +TE  + K+ EDA  +G    S+E S  ++I   +I L+     G +    
Sbjct: 1   MADEQDKSQQTEEATPKREEDARKKGQIATSKEPS--TAIAFTVISLIVITGLGSWFGEQ 58

Query: 61  DLHVL---LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
             H+L   L+ A   K         L++ ++   + +V+P  +  M+ G+    +   PV
Sbjct: 59  MQHMLTNYLSGAVHIKATGEGMQKLLISAVT-DMAMVVLPIAVPIMLLGLLVTFMVSGPV 117

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                + P F+++S  +GIKR++S   L  F+KS +K++L+       ++  +  +L   
Sbjct: 118 FTFETMIPKFEKISPLKGIKRLFSTKALAEFIKSVLKLVLISVACATIVSGMFSEILHTA 177

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +P  I     F   K+  ++ +    + + D+ +   +    L+MSK+E +DE K S 
Sbjct: 178 LKDPADIAALTLFGSVKITTLVAVIFVVIALADVLYQRWEHAKSLRMSKKEQRDEHKDSE 237

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K + + I   + +++MM     A +IITNPTH ++AL Y      AP ++AKG+ 
Sbjct: 238 GDPQLKAKIRQIQMQQAQNRMMSDVPDADVIITNPTHISIALAYDPLSPGAPRVLAKGKG 297

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A K+R+IA EH+IP+ E   LARSLFKQV +   IP V ++A+A ++ +I+  K
Sbjct: 298 HLAAKIREIAREHHIPMRENKPLARSLFKQVKVGDEIPEVLFEAIAIILAEIFRLK 353


>gi|300935856|ref|ZP_07150814.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1]
 gi|300458968|gb|EFK22461.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1]
          Length = 382

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 195/353 (55%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ ++   L 
Sbjct: 2   SDEIDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-ALARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|15615002|ref|NP_243305.1| flagellar biosynthesis protein FlhB [Bacillus halodurans C-125]
 gi|10175059|dbj|BAB06158.1| flagella-associated protein [Bacillus halodurans C-125]
          Length = 363

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 198/355 (55%), Gaps = 20/355 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV---- 64
            KTE  + KK +D+  +G    S + +    +L   ++L  F  P +      L +    
Sbjct: 15  EKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLCVFLFLWLFGGPLLGGTLEKLLIHTFE 74

Query: 65  --LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
             LL   T+   E ++ ++F    +++ A+ +++P + + ++ G+ +  IQ  P+     
Sbjct: 75  SYLLMDVTE---ESVAELMF---EITMEAAIVLLPIMAIALIAGVLASYIQVGPLFTTEP 128

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K    ++   +G KRI+S+  LV F+KS +KI+L G +   S+   +F++ D +  +  
Sbjct: 129 LKMKLSKIDPIKGAKRIFSVRALVEFLKSLLKIVLTG-LAAFSIV--WFSLEDVMLLSQK 185

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSY-HQWYS---KLKMSKQEIKDEIKQSYG 238
           S+  ++F TV ++  ++ + IA L ++     Y +Q Y    +++MSKQ++KDE K   G
Sbjct: 186 SV-ENSFVTVAQLTALLGILIAILLLILSIPDYLYQRYDHEKQIRMSKQDVKDEHKNVEG 244

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K+++K         +MM+   +A ++ITNPTHYA+AL+Y Q++ DAPV+VAKG + 
Sbjct: 245 DPKVKSKRKQKQMEMAMQRMMQEVPKADVVITNPTHYAIALKYDQSKMDAPVIVAKGVDY 304

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++ +A +HN+   E   LAR+L+ Q  I   +P   +KAVA+++  +Y  K
Sbjct: 305 VAFKIKSLAKQHNVVTVENKPLARALYDQADIGDQVPEQLFKAVAEVLAYVYRLK 359


>gi|253998503|ref|YP_003050566.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4]
 gi|253985182|gb|ACT50039.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4]
          Length = 384

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 32/368 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIY 56
           M+E D+   KTE  + K++E A  EGN P SRE    A L +  +   +    F     +
Sbjct: 1   MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP----GLLLFMMFGIGSYLI 112
           ++   LH   A A    L        LL  +S S   L+I       LLF+M      LI
Sbjct: 60  TMGGSLHFERALAYDSNL--------LLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLI 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
               V N   V P F R++   G+  + S N LV  +K+  K ILVG++  + +  +  T
Sbjct: 112 GGWNVSNQAFV-PKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDT 170

Query: 173 MLDFIS-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +L           A    +L  +FF +   L++I         +D+ +    + + LKM+
Sbjct: 171 ILSLALLPLHTSIAEVEDMLLKSFFFIVGALVLI-------AAIDVPYQLTTYANNLKMT 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E+K E K+S GNP IK R +   R   R +MM    +A ++ITNPTHYA+A++Y +  
Sbjct: 224 KEEVKQESKESEGNPQIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELG 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             APV++AKG + +A K+R++A EH I   E P LAR+L+    +   IP   Y AVA++
Sbjct: 284 MRAPVVIAKGADAVALKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEI 343

Query: 346 IYKIYHKK 353
           I  ++  +
Sbjct: 344 IAYVFQMR 351


>gi|91785647|ref|YP_560853.1| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400]
 gi|91689601|gb|ABE32801.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
          Length = 406

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 181/358 (50%), Gaps = 31/358 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE+ + ++++ A  EG    SRE S F+     L+   FF   G++ ++  +      
Sbjct: 8   EKTESATPRRLQKAREEGQIVRSRELSTFA-----LLAAGFF---GVWGMSGSIG----- 54

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----------LLLFMMFGIGSYLIQRIPV 117
                L+ +    F   H     +R ++ G           LL  + F   + L   + +
Sbjct: 55  ---EHLQGMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMAL 111

Query: 118 ----LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
               L+   ++P F R++   G+ +++SIN  +    S VK ++VG I   ++      +
Sbjct: 112 GGWQLSSKGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEI 171

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L   +      L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E 
Sbjct: 172 LALATQPLQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREH 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           ++S G+P +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VA
Sbjct: 232 RESEGDPHVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG NL+A ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y 
Sbjct: 292 KGVNLVAARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQ 349


>gi|328911742|gb|AEB63338.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens LL3]
          Length = 360

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +D   +G    S + +   + ++ LI  L   + G Y     L  +   
Sbjct: 14  EKTEKATPKKRKDTRKKGQVAKSTDVN---TAVSLLIIFLSLIALGPYMRDRLLSFIKTF 70

Query: 69  ATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            T+    ++S    H +F+ T   +S   ++ P +L+ ++ GI S  +Q   + +   +K
Sbjct: 71  YTKSIALELSESNVHELFVDTVKDISL--ILAPIMLVALLAGIVSNYMQVGFLFSAEVLK 128

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P   ++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L      P  +
Sbjct: 129 PDLNKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEV 188

Query: 185 LYHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
           L    F  +  L M L     L +L   D  +    +   ++MSKQ+IKDE K+S G+PI
Sbjct: 189 LT---FVSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPI 245

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A 
Sbjct: 246 IKSKIKQKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLAL 305

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K+R+IA EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 306 KIRQIAKEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 357


>gi|308173601|ref|YP_003920306.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606465|emb|CBI42836.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553467|gb|AEB23959.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens
           TA208]
          Length = 359

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +D   +G    S + +   + ++ LI  L   + G Y     L  +   
Sbjct: 13  EKTEKATPKKRKDTRKKGQVAKSTDVN---TAVSLLIIFLSLIALGPYMRDRLLSFIKTF 69

Query: 69  ATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            T+    ++S    H +F+ T   +S   ++ P +L+ ++ GI S  +Q   + +   +K
Sbjct: 70  YTKSIALELSESNVHELFVDTVKDISL--ILAPIMLVALLAGIVSNYMQVGFLFSAEVLK 127

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P   ++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L      P  +
Sbjct: 128 PDLNKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEV 187

Query: 185 LYHAFFTVRKVLIMILLFIATLTVL---DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
           L    F  +  L M L     L +L   D  +    +   ++MSKQ+IKDE K+S G+PI
Sbjct: 188 LT---FVSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPI 244

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A 
Sbjct: 245 IKSKIKQKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLAL 304

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K+R+IA EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 305 KIRQIAKEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356


>gi|313200589|ref|YP_004039247.1| flagellar biosynthetic protein flhb [Methylovorus sp. MP688]
 gi|312439905|gb|ADQ84011.1| flagellar biosynthetic protein FlhB [Methylovorus sp. MP688]
          Length = 384

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 32/368 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIY 56
           M+E D+   KTE  + K++E A  EGN P SRE    A L +  +   +    F     +
Sbjct: 1   MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP----GLLLFMMFGIGSYLI 112
           ++   LH   A A    L        LL  +S S   L+I       LLF+M      LI
Sbjct: 60  TMGGSLHFERALAYDSNL--------LLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLI 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
               V N   V P F R++   G+  + S N LV  +K+  K ILVG++  + +  +  T
Sbjct: 112 GGWNVSNQAFV-PKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDT 170

Query: 173 MLDFIS-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +L           A    +L  +FF +   L++I         +D+ +    + + LKM+
Sbjct: 171 ILSLALLPLHTSIAEVEDMLLKSFFFIVGALVLI-------AAIDVPYQLTTYANNLKMT 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E+K E K+S GNP IK R +   R   R +MM    +A ++ITNPTHYA+A++Y +  
Sbjct: 224 KEEVKQESKESEGNPQIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELG 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             APV++AKG + +A K+R++A EH I   E P LAR+L+    +   IP   Y AVA++
Sbjct: 284 MRAPVVIAKGADAVALKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEI 343

Query: 346 IYKIYHKK 353
           I  ++  +
Sbjct: 344 IAYVFQMR 351


>gi|288553046|ref|YP_003424981.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4]
 gi|288544206|gb|ADC48089.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4]
          Length = 363

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 197/358 (55%), Gaps = 24/358 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG--IYSVTSDL--H 63
           D KTE  + KK +D+  +G   +++   + ++I+  L++L  +F  G  I S   DL  H
Sbjct: 13  DEKTEKATPKKRQDSRKKGQ--VAKSTDVNTAIILLLVFLFLWFFGGAIIGSTLMDLMKH 70

Query: 64  V----LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           V    LL   T R  E       +   + + A+ +++P +L+ M+ G+ +  IQ  P+  
Sbjct: 71  VFQTYLLMDVTPRSFE------AMFKEIVMEAAVVLLPIMLVAMVAGVAASYIQVGPLFT 124

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + +K    ++   +G KRI+S+  +V  +KS +KI   G ++ + L   +F + D +  
Sbjct: 125 TDPLKMKLSKIDPIKGFKRIFSVRAIVELLKSLLKIAFAGVVVFVIL---WFNLEDVLLL 181

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +  ++    F+ + ++  ++ + +A L    ++ D  +  +    ++KMSK++IKDE K 
Sbjct: 182 SQKAVA-DGFYVIAQLTALMGVAVAVLLLFLSIPDYLYQKYDHEKQIKMSKKDIKDEHKN 240

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P IK+++K         +MM+    A ++ITNPTHYA+AL+Y + + DAP++VAKG
Sbjct: 241 MEGDPRIKSKRKQKQMEMAMQRMMQEVPNADVVITNPTHYAIALKYDEEKADAPIIVAKG 300

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A+K++ IA EH++ + E   LAR+L+    I   +P   +KAVA+++  +Y  K
Sbjct: 301 VDYVAQKIKGIASEHDVVLVENKPLARALYANADIGEQVPEDMFKAVAEVLAYVYRLK 358


>gi|302185378|ref|ZP_07262051.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           syringae 642]
          Length = 378

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++DA  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGS-DIALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|254459117|ref|ZP_05072540.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD
           1]
 gi|207084388|gb|EDZ61677.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD
           1]
          Length = 349

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 187/354 (52%), Gaps = 19/354 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVT 59
           +DA   KTE P+ KKIEDA  EGN P S++ S    LF +ILA L  +LF +      + 
Sbjct: 3   DDA--EKTEEPTPKKIEDARKEGNVPKSQDTSGVITLFVAILATL--MLFPYMSNHMLLL 58

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
              +  L      KL  I   +  +    L    +++P  +   + G+ + L Q   +  
Sbjct: 59  FKYYFSLIGTPLDKLFMIDIAIVTIKEFLL----IIMPLAIAVAISGVIAALAQFGFLFT 114

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P FK++   +G K ++S+  L+  +K   K     T + I     +  +L+  + 
Sbjct: 115 TKAIMPDFKKIDPIKGTKNLFSMKKLIESVKITFKSF---TTLGIGFVFFFLYILELPTV 171

Query: 180 NPHSILYHAFFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              S+     +   K +I+   +LL I    ++DI     Q++  LKMSKQEIKDE+K  
Sbjct: 172 ALFSLGEQLVWLKDKAIILAFVMLLIIFVFAMIDIVIVRKQYFDGLKMSKQEIKDEMKNM 231

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P+IK + + I     R +MM     A +IITNPTHYA+AL+Y +++  AP +VAKG 
Sbjct: 232 EGDPLIKGKIRQIQMQASRKRMMAEVPNADVIITNPTHYAVALKYEESKR-APYVVAKGM 290

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           + IA++++KIA E+N+ I + P LARSL+  V I+  IP   + AVA+++  +Y
Sbjct: 291 DNIAQQIKKIARENNVHIVQNPPLARSLYADVEIDKPIPEELFAAVAEVLAYVY 344


>gi|114332395|ref|YP_748617.1| flagellar biosynthesis protein FlhB [Nitrosomonas eutropha C91]
 gi|114309409|gb|ABI60652.1| flagellar biosynthetic protein FlhB [Nitrosomonas eutropha C91]
          Length = 376

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 182/352 (51%), Gaps = 10/352 (2%)

Query: 6   APDN---KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
           A DN   +TE  S +++E +  EG    S+E + F+ ++A    L    S     +   L
Sbjct: 2   ADDNDLERTEPASPRRLEKSREEGQVARSQELTTFTMLMAASGSLWVIGS----LIIQKL 57

Query: 63  HVLLASATQRKLEDISHIVFLLT---HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             LL S  Q + E   +   LL     L+L     + P L   ++  + S ++    + +
Sbjct: 58  SALLESGLQIEREVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIVALVSPMLLSGWLFS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P FKR++   G KRI+S + L+  +K+  K  ++G +    +  +   +LD I  
Sbjct: 118 SKALFPDFKRLNPVNGFKRIFSSHGLIELVKAIAKAAVIGGVAAGIIWSHKQDVLDLIGM 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              + L      +    ++I+  +  L V+D+ +       +L+MSK++++ E K+  G+
Sbjct: 178 PLDTGLTSMGRLIGLTFMLIVGAMLLLVVIDVPFQLWNHARQLRMSKEDLRKEAKEDEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +S+ R   R +MM    RA +++TNPTHYA+AL+Y      AP +VAKG  LI
Sbjct: 238 PQVKARIRSMQREMARRRMMAEVPRADVVVTNPTHYAVALKYQDHSMRAPKVVAKGSQLI 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A ++R++A EH+IP+ E P LAR+L+  V +++ IP   Y AVA ++  ++ 
Sbjct: 298 AARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYVFQ 349


>gi|331269330|ref|YP_004395822.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
           BKT015925]
 gi|329125880|gb|AEB75825.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
           BKT015925]
          Length = 594

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G  P S+E S    +L   I LL        S   D+   
Sbjct: 245 ASDDKTEEATPHKLSEARKKGQVPKSKEVSSAIILLTSTIILLTLGEYVANSFKKDIIEF 304

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +    +L ++S ++ ++  +      + +P ++  M+ GIG+ L+Q   + +   +KP
Sbjct: 305 FTNYLNIEL-NVSSLISIIVTILWRFMIVFLPVVVPLMVMGIGANLLQTGYINSKEPLKP 363

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G K+++S+  ++  +K    I ++G +    L  N+  +L   +     I+
Sbjct: 364 QLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFVGYGFLKSNFRKVLSMTTLRFPVII 423

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + L +  + + D  +   Q+   +KMSKQE+K+E KQ  G+P +K +
Sbjct: 424 TSFLKLTTNIFFRVSLVMIAIALTDFIYQKFQFKRDMKMSKQEVKEEFKQMEGDPQVKGK 483

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+    A+++ITNPTH A+AL+Y   E++AP+LVAKG + IA K+++
Sbjct: 484 IKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGEDNAPMLVAKGSDYIAIKIKQ 543

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353
           IA E+++PI E   LAR +FK+V I + IP   Y+AVA+   L+YK+  +K
Sbjct: 544 IAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLKRQK 594


>gi|312135835|ref|YP_004003173.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           owensensis OL]
 gi|311775886|gb|ADQ05373.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           owensensis OL]
          Length = 366

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 195/356 (54%), Gaps = 23/356 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL--- 65
            KTE  + +K ++A   G    SRE +   ++L  +++L F +S     +T  L      
Sbjct: 15  TKTEKATPRKRQEARKRGMVAKSREVTSAFALLMSILFLKFGYSL----ITQPLQAFSTY 70

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQRIPVLN 119
                   +E++     LL  +  ++ ++V+P  L  M       +  GS+LI       
Sbjct: 71  FFGNLDYNIENVRDASRLLGLIVTTSLKIVLPFCLAVMFVATIVEWAQGSFLI------T 124

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFIS 178
              +K SF++++  EG KRI+SIN++V  +KS +K++++G     S T+++   +L+   
Sbjct: 125 AESLKISFQKINPIEGFKRIFSINSVVELIKSILKVLVIG-YTGYSYTKSFAKKLLEMYE 183

Query: 179 ANPHSILYHAFFT-VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            N  +I+  +F + V  +L M ++F   + ++D  +   Q+  KL M+K+E+K+E KQ+ 
Sbjct: 184 MNVLTIVKFSFDSAVNLILWMSVMFFG-IAIIDFTFQRWQYEKKLMMTKEEVKEEFKQTE 242

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK+R +   R     +M +   RA ++ITNPTHYA+AL Y   + DAP ++AKG++
Sbjct: 243 GNPQIKSRIRERQRRISLQRMFQQLPRADVVITNPTHYAVALLYEPEKFDAPRVIAKGKD 302

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA K+++ A ++NI I E   LAR+L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 303 YIALKIKQEAMKYNIEIVENKELARALYNICEIGDFIPPELYQAVAEVLAYVYSLK 358


>gi|256750759|ref|ZP_05491644.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750342|gb|EEU63361.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 363

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 182/347 (52%), Gaps = 2/347 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67
            KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL  
Sbjct: 15  EKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLYT 74

Query: 68  -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            S     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +   
Sbjct: 75  YSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAFK 134

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F+R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL 
Sbjct: 135 FERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDILK 194

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK   
Sbjct: 195 YALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAEI 254

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA +M++ 
Sbjct: 255 RRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKEE 314

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A + NIPI E   LA++L++   I   IP   Y+AVA+++  +Y  K
Sbjct: 315 AKKLNIPIVENKPLAQALYRSTEIGDMIPSELYQAVAEVLAYVYSLK 361


>gi|258592485|emb|CBE68794.1| Flagellar biosynthetic protein FlhB [NC10 bacterium 'Dutch
           sediment']
          Length = 359

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 189/355 (53%), Gaps = 9/355 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M  +DA D +TE+ +SK+ ++A   G   ++R   L +++L     L F+   G  S+ +
Sbjct: 1   MPSDDAKD-RTESATSKRRQEARGRGQ--VARSQDLNAALLMLSGILTFYVLGG--SLVA 55

Query: 61  DLHVLLASATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           DL  L+     + L     +  +   +   SL  + ++ P +   ++    S + Q   +
Sbjct: 56  DLVGLMRFYFGQGLGGELTVPRVQQTMFSASLRMATMLAPLMGTLVVVAYVSSVAQVGFL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
            N + +   ++R++   G KR+++    L+  +KS +K  LVG ++  +L+ +   +   
Sbjct: 116 TNSSALSLKWERLNPATGFKRLFAPGRTLIETIKSILKFALVGFLVYRTLSGHLSEIPLL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +   P   L        ++ + + L   TL  LD GW   Q+   ++M+K+E+K+E+KQ+
Sbjct: 176 MDMTPMQTLTWLGQICFQLALRVGLAFLTLAALDYGWQRWQFEKSIRMTKEEVKEEMKQT 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R K + R    H+MM    +A ++I NP H+A+A+RY  T  +AP +VAKG 
Sbjct: 236 EGDPAVKGRIKGLQRQAAMHRMMTDVPKADVVIVNPIHFAVAMRYDSTSMEAPTVVAKGA 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            L+A+++  +A  H IPI E+P LAR+L+K V I   IP   YKAVA+++  +Y 
Sbjct: 296 RLVAERIVAMAKAHGIPIVEDPPLARALYKAVSIGRPIPIHLYKAVAEILAYVYQ 350


>gi|330964680|gb|EGH64940.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 369

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 185/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  EG    S+E +    +L     LL F   GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLLMF-GAGIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  + D S++   L    L A  +++P L+  +   +   ++    + + 
Sbjct: 60  ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++    +KR++S + LV  +KSF K +++  +  + L++    ++      
Sbjct: 120 KSLMPKFSRMNPAARLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|192360845|ref|YP_001982207.1| flagellar biosynthesis protein FlhB [Cellvibrio japonicus Ueda107]
 gi|190687010|gb|ACE84688.1| flagellar biosynthetic protein FlhB [Cellvibrio japonicus Ueda107]
          Length = 379

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 193/363 (53%), Gaps = 24/363 (6%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF--FSPG-IY 56
           M+E +D+   KTE PS++++E A  EG  P SR+ +  + +L   I L  F  F  G + 
Sbjct: 1   MAEGDDSSQEKTEEPSARRLEKAREEGQIPRSRDLTTTAVLLLAAIGLWVFAEFMGGKLL 60

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQ 113
            +T +  ++  +        ISH+V  +    LS + L++  LL+  + G   +G +L  
Sbjct: 61  GITRENFIISRTDIFDTNAMISHLVRAIYQGMLSMAPLMVL-LLIASIVGPIALGGWL-- 117

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISL-TENY 170
               ++   + P   R+    G+KRI+S+ +L+   K+ +K  IIL+ TI  + L  ++ 
Sbjct: 118 ----MSSKAMMPKLSRMDPIAGLKRIFSLKSLIELFKALLKVSIILLTTIWLLFLYAQDM 173

Query: 171 FTMLDFISANP--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           F + D    N   HS+    + T+      I++       +DI    ++   KLKMS+Q+
Sbjct: 174 FRISDEAVGNAIVHSLEISIYATIALAATTIVI-----AAVDIPLQLYEHNKKLKMSRQD 228

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM     A ++ITNPTH+A+AL+Y     D 
Sbjct: 229 LKDEAKDTDGKPEVKGRIRQLQREMAQRRMMANVPMADVVITNPTHFAVALKYDPETMDT 288

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P+++AKG + IA K+R+IA  HNI   E P LAR+++    I+ AIP   Y AVAQ++  
Sbjct: 289 PIMLAKGGDNIALKIREIAKAHNIETIESPPLARAIYYTTEIDQAIPSGLYLAVAQVLAY 348

Query: 349 IYH 351
           ++ 
Sbjct: 349 VFQ 351


>gi|156933534|ref|YP_001437450.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531788|gb|ABU76614.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894]
          Length = 348

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 129/219 (58%)

Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
           GIKRI+S  +L   +K+ +K +LVG +  + L  N+  ++  IS +P + + +A   V  
Sbjct: 98  GIKRIFSSQSLAELLKAILKSVLVGIVTGVFLWYNWPDIMRLISESPIAAMRNALNLVAL 157

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
             I+I++ +  +   D+ W       KL+MS+Q+I+DE K   G+P +K R +   R   
Sbjct: 158 CCILIVMGLVPMVGFDVFWQIVSHTKKLRMSRQDIRDEFKNQEGDPHVKGRIRQQQREAA 217

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R+I  EH IP+
Sbjct: 218 RRRMMADIPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGNEHRIPM 277

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 278 LEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 316


>gi|187925774|ref|YP_001897416.1| flagellar biosynthesis protein FlhB [Burkholderia phytofirmans
           PsJN]
 gi|187716968|gb|ACD18192.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
           PsJN]
          Length = 403

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 189/369 (51%), Gaps = 38/369 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S    S+  
Sbjct: 1   MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMS---GSIGE 55

Query: 61  DLHVLLASA----------TQRKL--------EDISHIVFLLTHLSLSASRLVIPGLLLF 102
            L  +L +A          T+R +        E +  ++ +L    ++A         LF
Sbjct: 56  HLQGMLRAAFSFDHAGAFETRRMMIGAGVASREGLYALLPILAFTGVAA---------LF 106

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
               +G +       L+   ++P F R++   G+ +++SIN  +    S  K ++VG I 
Sbjct: 107 APMALGGWQ------LSAKGLEPKFDRLNPIAGLGKMFSINGPIQLGMSLAKTLVVGVIG 160

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
             ++      +L       H  L +    +     M +  +  +  +D+ +   Q++ KL
Sbjct: 161 GTAIWNRREEILALAMQPLHLALANTVHLIAVCCGMTVAGMFVVAAMDVPYQLWQFHKKL 220

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           +M+K+E+K E ++S G+P +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y 
Sbjct: 221 RMTKEEVKREHRESEGDPHVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYT 280

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
             E  AP +VAKG NL+A ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AV
Sbjct: 281 DGEMRAPKVVAKGVNLVAARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAV 340

Query: 343 AQLIYKIYH 351
           A+++  +Y 
Sbjct: 341 AEVLAWVYQ 349


>gi|90406806|ref|ZP_01214998.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
 gi|90312043|gb|EAS40136.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
          Length = 379

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 191/356 (53%), Gaps = 11/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    ++E  + ++I  +  +G    S+E +  S +++  I ++ F     Y    
Sbjct: 1   MAENENGTERSEEATPERIRKSKEKGQVARSKELATASVLISAAIAMMTFGGRLAY---- 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-LLLFMMFGI---GSYLIQRIP 116
           +L +++  +   +   +    ++  HLS S   L  P  ++LFM+F I   GS L+  + 
Sbjct: 57  ELSIMMKRSFTFERSVLFSPEYIWLHLSTSFYGLAWPMFIILFMLFVISILGSSLLGGM- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           + +   + P + R+S + G+KR+  +   V  +KS +K+++V       L   +  +L  
Sbjct: 116 LFSTKALMPKWNRLSPKAGLKRMLGMQAWVELLKSILKVLVVVGAAWWILGATFEHILHL 175

Query: 177 -ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            +S+ P S+ Y A   +  + +M+   +  +  +D+ +  ++   +LKM+KQEIKDE + 
Sbjct: 176 SVSSLPGSV-YEALDMLLWMFLMLCCSLLIIVAIDVPYQIYKHKEELKMTKQEIKDEYRN 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G P +K R + +     + KMME    A +I+TNPTHY++AL+Y Q    AP +VAKG
Sbjct: 235 SEGKPEVKQRIRQLQYEASQRKMMEDVPDADVIVTNPTHYSVALKYEQNGERAPYVVAKG 294

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A K+R++A ++ IP+ E P L R+++    IN  +P   + A+AQ++  IY 
Sbjct: 295 VDFMALKIREVARDNEIPVMESPPLCRAIYHTTEINEEVPEELFIAIAQILAYIYQ 350


>gi|237799251|ref|ZP_04587712.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022106|gb|EGI02163.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 378

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 183/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++DA  +G    S+E +    +L     LL F S  I ++ S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGS-DIAAMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + T+  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTITRETLMDQSYMGKALLSSGLHALVVILPFLIAMLVAALVGPIMLGGWLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KS  K +++  +    L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALAVLNSERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEKGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTDLDQEIPAGLYLAVAQVLAYVYQ 350


>gi|325288792|ref|YP_004264973.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964193|gb|ADY54972.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 355

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 187/346 (54%), Gaps = 11/346 (3%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLH 63
           DA   K    + K+ ++A  +G    S+E  L SSI L  +I +L F+ P +    +DL 
Sbjct: 2   DAIAEKRFPATPKRKQEARKKGQVLKSQE--LTSSIMLLAMIGVLRFWLPSVLERFADLM 59

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             + S    +  +IS +  L+ +++  A++++ P LL  +   +    IQ   + +   +
Sbjct: 60  KYVYSLPT-EWSNIS-VASLMLNMTWQAAQILAPVLLTTVAVAVAVNYIQVGSLFSTEAI 117

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN--YFTMLDFISANP 181
            P   R+SL EG KR++ +   +   KS +K+I +G  +   + ++   F  L  I+A  
Sbjct: 118 MPKLSRLSLIEGAKRMFGVRAWIQLAKSLLKVIAIGYFLYAVIRDHLEMFPALQQINALQ 177

Query: 182 HSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            ++ L    F +   +    L I+ L  L   W Y +    L+MS +EIK+E KQ+ G+P
Sbjct: 178 ATMFLGEILFELAWKIATAFLLISILDFLYQWWEYEK---NLRMSHEEIKEEYKQNEGDP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +KN  K   R+    +MME   +A ++ITNPTHYA+AL+Y   + DAP +VAKGQ+ +A
Sbjct: 235 QLKNEMKKRQRAVAMRRMMEDLKKADVVITNPTHYAVALKYDPQKFDAPYVVAKGQDQVA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++++ A E+ I + E   LAR+L+ QV I  A+P   YKAVA+++
Sbjct: 295 LRIKETARENRIIMMENKPLARTLYTQVEIGQAVPAELYKAVAEVL 340


>gi|261855327|ref|YP_003262610.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus
           c2]
 gi|261835796|gb|ACX95563.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus
           c2]
          Length = 379

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 189/360 (52%), Gaps = 15/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           M+EN+    KTE PS K++ +A  +G    SRE  SL  +  + +++L+     G + + 
Sbjct: 1   MAENENGQEKTEEPSEKRLREAREKGQVARSRELGSLALTAGSAIVFLVM----GGH-ML 55

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASR---LVIPGLLLFMMFGIGSYLIQRIP 116
           S L  +   A      +I     +   L+LS S     ++P  L  ++  + S L+    
Sbjct: 56  SRLEQMFRHAFTLSRAEIMDPATMFHRLALSFSEGFLALLPFFLAAVVLAVSSTLLVGGW 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTM 173
             +   + P F R++   G KR++S+ +LV  +K+  K  L+  I  I L    E  F  
Sbjct: 116 NFSTQALAPQFNRLNPLSGFKRMFSMKSLVELLKTLAKFFLIAAI-AIGLFEAMEKDFVG 174

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L  +     + L  A   +    + + L +  + ++D+ +  +++   L+M++QE+ DE 
Sbjct: 175 LGLMGL--EAGLARAGTLLSWSFLGLSLGLLVVAMIDVPFQMYEYKKGLRMTRQEMIDEY 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K+  G P +K + + + R   + +MMEA   A +IITNPTH+++AL+Y    + AP++VA
Sbjct: 233 KEVEGKPEVKQKIRQLQRQMAQRRMMEAVPTADVIITNPTHFSVALKYQPNSDAAPMVVA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A  +RKIA  +++P+FE P LARSLF  V +  AIP   Y AVAQ++  ++  K
Sbjct: 293 KGADEMAMTIRKIANANHVPLFESPQLARSLFAHVEVGDAIPSGLYVAVAQVLAYVFQMK 352


>gi|152983829|ref|YP_001349232.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PA7]
 gi|150958987|gb|ABR81012.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PA7]
          Length = 378

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 197/360 (54%), Gaps = 15/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  +A  +G  P SRE +  + ++A    LL + +     + +
Sbjct: 1   MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGA----DLAA 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLS---ASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            +  L+ S+ +   E + +   +L  L  S   A++ + P LL+ ++  I   +     +
Sbjct: 57  AMLRLMRSSFELSRETVLNTESMLQLLGASGYLAAQGLWPILLMLLVAAIVGPIALGGWL 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +++ ++P F R++   G+KR++S  +L+   K+ +K ++V  +  + L+ +   +L  +
Sbjct: 117 FSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALL-AL 175

Query: 178 SANP--HSILYHAFFTVRKVLIMI--LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           +  P   +IL+ A         M   LL IA + V    W   Q   KL M+KQE++DE 
Sbjct: 176 AHQPLEQAILHSAQVVGWSAFWMACSLLLIAAVDVPYQIWDNRQ---KLMMTKQEVRDEY 232

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K S G P +K++ + + R   + +MM A   A ++ITNPTH+A+AL+Y      AP+L+A
Sbjct: 233 KDSEGKPEVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLA 292

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A K+R++A EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y  K
Sbjct: 293 KGNDFLALKIREVAREHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352


>gi|221635443|ref|YP_002523319.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM
           5159]
 gi|221157327|gb|ACM06445.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM
           5159]
          Length = 363

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 172/345 (49%), Gaps = 5/345 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSI--LACLIYLLFFFSPGIYSVTSDLHVLL 66
            +TE  + ++ ++A   G  P  R A L S++  LA   +L ++      ++   L    
Sbjct: 4   ERTERATPRRRQEARKRGQVP--RSADLTSALVLLAGAFFLPWYAGAAGQTLWDYLERAF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    R L     IV L      +  +L +P L LF   G+ S L+Q   V     +KP 
Sbjct: 62  SGPLPRDLTG-PDIVALAWASGATVLKLALPILGLFAAVGVASTLVQAGFVFAPAVLKPD 120

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           ++R+    G +R++S   L    K+ +KI +V  +    +  +     D   A P +I  
Sbjct: 121 WRRIDPIAGFQRLFSRRGLFETGKALLKIAIVLAVTYPLIQRDLPRYADLTGAEPAAIAQ 180

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
               ++R + + +      L +LD G+       +L+M++ E+K+E++Q+ G+P IK R 
Sbjct: 181 AIGQSMRDLAVRVGAAYLALAILDYGFQRWDLEQRLRMTRHELKEELRQTEGDPEIKARI 240

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + R     +MM    +AT+++TNPTH A+ALRY      APV+VAKG   +A+++  I
Sbjct: 241 RRLQRQMAMRRMMAQVPKATVVVTNPTHLAVALRYEPRSMRAPVVVAKGAGAVAERITAI 300

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A +H IP+     LA++L++ V +   IP   Y+AVA +I  +Y 
Sbjct: 301 ARQHTIPVLRNQPLAQALYRTVEVGQEIPITLYEAVADIIAYVYR 345


>gi|157164760|ref|YP_001466322.1| flagellar biosynthesis protein FlhB [Campylobacter concisus 13826]
 gi|112800831|gb|EAT98175.1| flagellar biosynthetic protein FlhB [Campylobacter concisus 13826]
          Length = 357

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 194/352 (55%), Gaps = 22/352 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSI---LACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE  + KKIEDA  +GN P S++ S F ++   +  L+ +L F    + S    L++ 
Sbjct: 7   EKTEEATPKKIEDAKKDGNVPKSQDLSGFVTLVIAIGVLLAMLNFMKDQVIS----LYIY 62

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +    + L  +  +  ++ +    A  +++P  +   + GI + ++Q   +     + P
Sbjct: 63  YSKFIGQPLT-LPTVKMIVVNTFGRALLMILPVCICVAVAGIIANVMQFGFIFTTKPITP 121

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F +++  +G+K ++S       MK  ++ + +   ++I     ++  L FI   PH++ 
Sbjct: 122 NFGKINPLKGLKNLFS-------MKKAIESVKIVVKVSIVFGVGFYFFLQFIKELPHTLF 174

Query: 186 YHAFFTVRK------VLIMILLFIA-TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           +  F  +        +L+ ++LFI   + + D+     Q++  L+MSKQEIKDE KQ  G
Sbjct: 175 FSMFDQLAWLKEKLIILVSVMLFILFVIGLADLLIVRFQYFKDLRMSKQEIKDEYKQMEG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +       + +MM+   +A ++ITNPTHYA+A+RY ++ ++AP+++AKG + 
Sbjct: 235 DPQVKGRIRQAQMRAAKRRMMQNIPQADVVITNPTHYAVAIRYDKSRDEAPIILAKGVDF 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +A +++K+A E+ + I+E P LAR L++   ++  IP   ++AVA+++  +Y
Sbjct: 295 LALQIKKVAVENGVQIYENPPLARELYRVCEVDDTIPAHLFRAVAEVLSFVY 346


>gi|323210683|gb|EFZ95561.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 338

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 136/231 (58%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P F +++   GIKR++S       +K+ +K  LVG +    L  N+  M+  ++ +P 
Sbjct: 76  LQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHNWPQMMRLMAESPI 135

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P +
Sbjct: 136 VAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 195

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA +
Sbjct: 196 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALR 255

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 256 IREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 306


>gi|333004498|gb|EGK24027.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-272]
 gi|333017872|gb|EGK37178.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-227]
          Length = 397

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 193/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NP HY++AL+Y + +  AP +VAKG  L+ 
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPNHYSVALQYDENKMSAPKVVAKGAGLVV 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|118133499|gb|ABK60543.1| flagellar biosynthetic protein FlhB [Clostridium novyi NT]
          Length = 575

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 183/351 (52%), Gaps = 4/351 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G    S+E +    +L   I LL        S+  D+   
Sbjct: 226 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 285

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +     L   S    ++T ++   + + +P +L  M+ G+G+ L+Q   + +   +KP
Sbjct: 286 FTNYLNMNLNSGSLQSIIVT-IAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 344

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G K+I+S+  ++  +K    I ++G +    L  N+  +L   S     I+
Sbjct: 345 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 404

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + L +  + ++D  +   Q+   ++MSKQEIK+E KQ  G+P IK +
Sbjct: 405 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 464

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM++   A+++ITNPTH A+AL+Y   ++ AP LVAKG + IA K+++
Sbjct: 465 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 524

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353
           IA E+ +PI E   LAR +FK+V + S IP   Y+AVA+   L+YK+  KK
Sbjct: 525 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLKRKK 575


>gi|256022455|ref|ZP_05436320.1| flagellar biosynthesis protein FlhB [Escherichia sp. 4_1_40B]
          Length = 382

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+ S+   L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGV-SLARRLS 57

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++        + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 58  GMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKCSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|71906378|ref|YP_283965.1| flagellar biosynthesis protein FlhB [Dechloromonas aromatica RCB]
 gi|71845999|gb|AAZ45495.1| Flagellar biosynthetic protein FlhB [Dechloromonas aromatica RCB]
          Length = 379

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 182/350 (52%), Gaps = 6/350 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE P+ ++IE A  +G  P SRE + F   L   +    F+  G + +   L 
Sbjct: 5   EDSDLEKTEEPTGRRIEQAREQGQVPHSRELATF---LVLAVAGATFWMMGSWFMQRSLV 61

Query: 64  VLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           ++        R + D   ++  L  +S  A  +  P L L ++  I         V +  
Sbjct: 62  IMQKGFFVESRYMRDPDLMLPRLAEISGDALFVFSPLLGLLLLAAILPPFFLNAWVFSPK 121

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            + P   R++   G  R++S N+L+   K+ +K +LVG +  + + +    +   +    
Sbjct: 122 ALVPDLNRLNPLSGFGRMFSWNSLMELAKAVLKAVLVGGVAAMLIWKERDEIFGLLGEPL 181

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              L HA   V    ++++  +  + V D+ +   Q++ KLKMSK+E+K E+K+  G+P 
Sbjct: 182 EVGLAHAGHLVSFSFLILVATLVLVVVADVPFQLWQYFDKLKMSKEEVKQEMKEMMGDPH 241

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K R +S+     R +MM A  +A +++TNPTHYA+AL Y QT   AP +VAKG   +A 
Sbjct: 242 VKGRIRSLQMQAARKRMMSAVPKANVVVTNPTHYAVALAY-QTGMGAPKVVAKGVGAVAL 300

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           K+++IA EH +PI E P LAR+L+K   +++ IP   Y AVA+++  IY 
Sbjct: 301 KIKEIANEHAVPIMEAPPLARALYKHSELDTEIPSALYNAVAEVLAYIYQ 350


>gi|310659024|ref|YP_003936745.1| flagellar export pore protein [Clostridium sticklandii DSM 519]
 gi|308825802|emb|CBH21840.1| flagellar export pore protein [Clostridium sticklandii]
          Length = 363

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 189/355 (53%), Gaps = 18/355 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + KTE  S KK +D+  +G    SRE    A+L +S+LA      F F     +      
Sbjct: 15  EEKTEKASPKKKQDSRKKGQVMQSREINTAAALMASVLALKYSGGFMFRTITEATYFFRD 74

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121
           +L        +     +++++ +++ +   ++        +  + +++  +I V NL   
Sbjct: 75  LLYTDILNESIGGYKILIYMIMYVTKAVVIVI-------GVGFVAAFITSKIQVGNLFTT 127

Query: 122 ---HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               +KP  +R++  EG KR++S+ + V  +KS +KI +VG +    L +N   +L    
Sbjct: 128 ETLKIKP--ERLNPIEGFKRMFSMRSFVELVKSLLKIGVVGFVGYSYLAKNIGLVLKSQQ 185

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             P    Y  F     + I +   I  + +LD  +  + +   LKMSKQEIK+E KQS G
Sbjct: 186 LKPIQFSYMIFELSINLAIRMTFAITVIAILDFFYQRYDYEKNLKMSKQEIKEEYKQSEG 245

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R     +MM+   +A +IITNPTH+A+A++Y + + +AP +VAKG+NL
Sbjct: 246 DPQIKSKIKEKQRQAAMRRMMQEIPKADVIITNPTHFAVAIKYDEDKFEAPYVVAKGKNL 305

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA+ +++ A E NIP+ E   LA++L+K+V I   I P  Y+AVA+++  +Y  K
Sbjct: 306 IAQNIKQKAREVNIPVVENKPLAQALYKEVEIGQMISPQLYEAVAEILAYVYSLK 360


>gi|171321732|ref|ZP_02910646.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
 gi|171092980|gb|EDT38217.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
          Length = 399

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 180/357 (50%), Gaps = 29/357 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           ++TEA + ++ E A  EG    SRE + F+ + A         +P          G ++ 
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    +E ++ ++ +L    L+A               +G +LI +
Sbjct: 68  DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAAL---------LAPMALGGWLISQ 118

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +  + S  K ++VG I  I++  +   +L
Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLLMSLAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    S L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G NL+A ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y 
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349


>gi|209522058|ref|ZP_03270713.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
 gi|209497504|gb|EDZ97704.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
          Length = 411

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 185/350 (52%), Gaps = 5/350 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE+ + ++++ A  EG    SRE S F+ +LA   Y ++  S  I     ++ 
Sbjct: 3   GDSDLEKTESATPRRLQKAREEGQVARSRELSTFA-LLAAGFYGVWGMSGSIGDHFQNM- 60

Query: 64  VLLASAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            L AS T       D S ++      S      ++P L L  +  + + +     +L+  
Sbjct: 61  -LRASLTFNHASTFDTSRMLIGAGAASREGLYALLPILALTGLAALLAPMALGGWLLSTK 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F R++  EG+ R++SIN  +    S  K ++VG I   ++   +   L   +   
Sbjct: 120 ALEPKFSRLNPIEGLSRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQPL 179

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
           +  L ++   +     M +  +  L  LD+ +    ++ KL+M+K+E+K E ++S G+P 
Sbjct: 180 NLALANSVHLIAVCCGMTVAGMFVLAALDVPYQLWTFHKKLRMTKEEVKREHRESEGDPH 239

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK + +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A 
Sbjct: 240 IKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAA 299

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y 
Sbjct: 300 RIRELAAENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQ 349


>gi|162139705|ref|YP_877991.2| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           novyi NT]
          Length = 610

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 183/351 (52%), Gaps = 4/351 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G    S+E +    +L   I LL        S+  D+   
Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +     L   S    ++T ++   + + +P +L  M+ G+G+ L+Q   + +   +KP
Sbjct: 321 FTNYLNMNLNSGSLQSIIVT-IAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G K+I+S+  ++  +K    I ++G +    L  N+  +L   S     I+
Sbjct: 380 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + L +  + ++D  +   Q+   ++MSKQEIK+E KQ  G+P IK +
Sbjct: 440 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM++   A+++ITNPTH A+AL+Y   ++ AP LVAKG + IA K+++
Sbjct: 500 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 559

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353
           IA E+ +PI E   LAR +FK+V + S IP   Y+AVA+   L+YK+  KK
Sbjct: 560 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLKRKK 610


>gi|123442794|ref|YP_001006771.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332161312|ref|YP_004297889.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122089755|emb|CAL12608.1| flagellar biosynthetic protein FlhB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605230|emb|CBY26728.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665542|gb|ADZ42186.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860618|emb|CBX70915.1| flagellar biosynthetic protein flhB [Yersinia enterocolitica
           W22703]
          Length = 383

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 185/356 (51%), Gaps = 13/356 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  +K+E P++ K+E A  +G  P SRE    +S+L     L   +  G  S+   L 
Sbjct: 3   EDSDADKSEEPTAHKLEKAREKGQIPRSRE---LTSMLMLGAGLAILWVSG-ESMARQLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118
            ++A         IS    +L  + +   + +I  + +F    I   +   +P+L     
Sbjct: 59  AMIAQGLHFDHGLISDDKQMLRQIGMLLRQTLIALIPIFAGLVI---VAMAVPMLLGGVL 115

Query: 119 -NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +K   KR+S   G+KR++S   L   +K+ +K  LVG +  I L  N+  M+  +
Sbjct: 116 FSGESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLM 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +A P + L  A   +    ++++L +  +   D+ +       KL+M+KQEI+DE K   
Sbjct: 176 AAPPVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +T+  AP ++AKG  
Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 296 AVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|172057870|ref|YP_001814330.1| flagellar biosynthesis protein FlhB [Exiguobacterium sibiricum
           255-15]
 gi|171990391|gb|ACB61313.1| flagellar biosynthetic protein FlhB [Exiguobacterium sibiricum
           255-15]
          Length = 363

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 192/356 (53%), Gaps = 22/356 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSP--G---IYSVTSDL 62
            KTE  S +K +D+  +G   +++ A L SS++   ++L LFFF P  G   +  + + L
Sbjct: 16  EKTEKASPRKRDDSRKKGQ--VAKSADLTSSLMLFGMFLILFFFGPFLGKRFVMVLENGL 73

Query: 63  --HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L +  + +++++  ++ +L  + +    LV P  +  ++ GI    +Q   +L+ 
Sbjct: 74  SAQTVLVAVEEGRIQEV--MIEMLVQMGI----LVAPFFVTAVVIGILGNFVQIGALLST 127

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS-- 178
             ++P   R++  +GIKRI S+  L+ F+KS  K++++G      L  N   +    S  
Sbjct: 128 ESIQPKLDRINPLQGIKRIVSMKALIEFLKSVFKLLVIGATSGTVLWNNKVEISRLTSEP 187

Query: 179 -ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  +I+ H  F +    I + + +  L VLD  +    +   ++MSKQ++KDE K + 
Sbjct: 188 IGDALAIIGHLTFLLG---ISVSIALIVLAVLDFAYQKFDFEKSIRMSKQDLKDEHKNTE 244

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK + K   R     +MM+    A ++ITNPTHYA+A++Y   ++ AP++VAKG +
Sbjct: 245 GDPQIKGKIKQQQREMAMRRMMQEIPNADVVITNPTHYAVAIQYDDGKHAAPIVVAKGVD 304

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A ++R+ A    IPI E   LAR+LF +  I  A+   FY+A+A+ +  +Y  K
Sbjct: 305 AVAFRIREKATAAEIPIIENRPLARALFAKSEIGMAVDESFYQALAETLAFVYQMK 360


>gi|268678882|ref|YP_003303313.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616913|gb|ACZ11278.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 353

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 191/354 (53%), Gaps = 26/354 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSIL----ACLIYLLFFFSPGIYSVTSDLHV 64
            KTE  +SKKIEDA  EGN P S++ S F +++    A L +L F  S  IY +      
Sbjct: 6   EKTEEATSKKIEDARKEGNVPKSQDMSAFVTLVVALGAFLAWLSFIESRIIY-LYHYYQS 64

Query: 65  LLASATQRKLEDISHIVFLLTHLSL-SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           L+ +      E    + F ++ +SL     +VIP  L   + GI + ++Q   +     +
Sbjct: 65  LIGT------EITKEVTFQISLISLREVVFMVIPLALAVAIAGILANVMQTGFLFTTKPL 118

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P+F ++   +G K ++S+  L+  +K+ +K+ +V  I       +YF +  F    P  
Sbjct: 119 MPNFGKLDPIKGFKNLFSLKKLIETVKTLLKVSVVMGI-------SYFFLWSFTKELPTV 171

Query: 184 ILY-----HAFFTVR--KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           I +      A+   +   +  +IL+ +  L + D+      ++ +L+MSKQE+KDE KQ 
Sbjct: 172 IYFPLPDQMAWLKEKMLILAAVILIILLVLALADLMLVRFNYFKELRMSKQEVKDEYKQM 231

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK + + I     R +MM+    A ++ITNPTHYA+A+RY Q +  AP ++AKG 
Sbjct: 232 EGDPKIKAKIRQIQMQMTRKRMMQEIPGADVVITNPTHYAVAIRYHQDKEAAPKVIAKGT 291

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +L+A ++++IA  H+I I E P LAR L+K+  I   IP   YKAVA+++  +Y
Sbjct: 292 DLVALRIKEIALNHHIQIVENPPLARELYKKCNIGELIPENLYKAVAEVLAFVY 345


>gi|188991600|ref|YP_001903610.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733360|emb|CAP51561.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 376

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 177/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    S
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGTGVFALMLMARGIGDGAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   ++ +++    +   ++  
Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L   D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA   A +++ NPTHYA+AL+Y   +  APV+VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQ 350


>gi|212709483|ref|ZP_03317611.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM
           30120]
 gi|212687821|gb|EEB47349.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM
           30120]
          Length = 383

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 180/366 (49%), Gaps = 36/366 (9%)

Query: 4   NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-------------- 48
           +D  D  KTE P+  K + A ++G    S+E S    +LA +  L               
Sbjct: 2   SDESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLATQLRQIM 61

Query: 49  ---FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
              F F       T  +   L       L  +  I+  L  + +SAS LV  G LLF   
Sbjct: 62  RQGFIFDGHYLQNTGLMLSYLGRVVSEALFALLPIIGGLALVGISASSLV--GGLLF--- 116

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
                        N   +K   K+++  +G+KRI+S+N L    K+ +K + VG   +I 
Sbjct: 117 -------------NSKLIKFDLKKLNPIKGLKRIFSMNALSELFKAILKCVFVGLGASIF 163

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           L +++ ++L  +   P + L +A   V     +I+  +  +   D+ + +     KL+MS
Sbjct: 164 LWQSWPSLLHLVMEPPTTALANALEKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMS 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           +QEIKDE KQ  G+P IK + +   R+  R++MM     A +I+TNPTHYA+AL+Y   +
Sbjct: 224 RQEIKDEFKQQEGDPHIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKK 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP ++AKG  +IA+++++I  EH I   E P LAR+L++   I  +IP   Y AVA++
Sbjct: 284 MGAPKVLAKGAGVIAQRIKEIGAEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEV 343

Query: 346 IYKIYH 351
           +  +Y 
Sbjct: 344 LAWVYQ 349


>gi|2494575|sp|Q56886|FLHB_YEREN RecName: Full=Flagellar biosynthetic protein flhB
 gi|793892|emb|CAA88185.1| flhB [Yersinia enterocolitica]
          Length = 383

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 185/356 (51%), Gaps = 13/356 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  +K+E P++ K+E A  +G  P SRE    +S+L     L   +  G  S+   L 
Sbjct: 3   EDSDADKSEEPTAHKLEKAREKGQIPRSRE---LTSMLMLGAGLAILWVSG-ESMARQLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118
            ++A         IS    +L  + +   + +I  + +F    I   +   +P+L     
Sbjct: 59  AMIAQGLHFDHGLISDDKQMLRQIGMLLRQTLIGLIPIFAGLVI---VAMAVPMLLGGVL 115

Query: 119 -NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +K   KR+S   G+KR++S   L   +K+ +K  LVG +  I L  N+  M+  +
Sbjct: 116 FSGESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLM 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +A P + L  A   +    ++++L +  +   D+ +       KL+M+KQEI+DE K   
Sbjct: 176 AAPPVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +T+  AP ++AKG  
Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 296 AVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|158320532|ref|YP_001513039.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii
           OhILAs]
 gi|158140731|gb|ABW19043.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii
           OhILAs]
          Length = 362

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 189/361 (52%), Gaps = 33/361 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY---LLFFFSPGIYSVTSDLHV 64
           + KTE  + KKI+DA  +GN   S+E +    +LA  I       F    + ++T  ++ 
Sbjct: 12  EEKTEQATPKKIKDAREKGNVLQSKEVNSALILLAIFIIINAFATFIGVSLLNMTRAVYT 71

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVI-------PGLLLFMMFG-------IGSY 110
              SA         +I F + +L + + +L+I       P  L  ++ G       +G  
Sbjct: 72  EFLSA---------NIAFSVKNLQILSIKLMIYFFIAVGPIALTSLVVGLISSYAQVGVL 122

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           L  +  + +LN + P        EG K+++S+ ++V  +K+F+++ ++G I    +    
Sbjct: 123 LTSKPLMFDLNKINPI-------EGFKKMFSMRSVVELLKAFIRLGVIGYISYDYVKGQV 175

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
             +L+    +  SIL         + I   + +  L VLD  +  +++   LKMSKQEIK
Sbjct: 176 GVILETTGMDISSILKAIMSMTVDIGIKAGIALIALAVLDYYYQRYEYNKNLKMSKQEIK 235

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           +E KQ+ GNP IK++ K   R     +MM+    A +IITNPTH+A+ ++Y   E DAP 
Sbjct: 236 EEYKQTEGNPQIKSKIKEKQRQMAMRRMMQDVPSADVIITNPTHFAIGIKYDLNEFDAPK 295

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++AKGQ+LIA+ ++KIA E+N+ + E   LAR+L+  V +   +PP  Y+AVA+++  +Y
Sbjct: 296 VIAKGQDLIAQNIKKIALENNVTVVENKPLARALYDSVEVGQFVPPDLYQAVAEVLAYVY 355

Query: 351 H 351
            
Sbjct: 356 R 356


>gi|21231358|ref|NP_637275.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768589|ref|YP_243351.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113019|gb|AAM41199.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573921|gb|AAY49331.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 376

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 177/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    S
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGTGVFALMLMARGIGDGAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   ++ +++    +   ++  
Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNRP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L   D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA   A +++ NPTHYA+AL+Y   +  APV+VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQ 350


>gi|220903612|ref|YP_002478924.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867911|gb|ACL48246.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 359

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 186/354 (52%), Gaps = 18/354 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + K+I     EGN P S+E     S+L  +  L  +  P   ++       L+ 
Sbjct: 9   SKTEEATPKRIRKQRGEGNVPKSQELGKAVSLLGGMSILYAWIGPMSEAIKKLFRHFLSH 68

Query: 69  ATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK--- 124
           A +   +     V+ LT  L +   ++++P LL      + S L QR+ V  L   K   
Sbjct: 69  AWE--FDPNPENVYSLTLELMIEVCKIIMPILL---TLAVLSMLAQRLQVGKLWTTKVFK 123

Query: 125 PSFKRVSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           P  +R ++ +GIK+ ++S   ++  +KS +  +++ TI    + + Y   L    A    
Sbjct: 124 PKLQRFNIFKGIKQMLFSPQTILRTIKSLLFSLILSTIPAWIIYKEYQNFLPMYYATTEG 183

Query: 184 I----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +    L  AF  V   LI IL+  A     D+  S + +   +KM+K E+KDE KQ+ G+
Sbjct: 184 VAVYMLQMAFKLVSYALIPILIIAA----FDVWQSRYSYKENMKMTKDEVKDEHKQADGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K++Q+      +  +M++   +A ++ITNPTH A+ALRY  TE  APV++AKG + +
Sbjct: 240 PVVKSQQRKKMMEAMSKRMLQDVPKADVVITNPTHIAVALRYNATEAPAPVVLAKGADHL 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K+++ A EHN+PI E   LAR+L+K   +   IP   YKAVA ++  I+  K
Sbjct: 300 AEKIKQAAREHNVPIRENVPLARALYKSAEVGDMIPEELYKAVATVLAAIWKLK 353


>gi|187478176|ref|YP_786200.1| flagellar biosynthesis protein FlhB [Bordetella avium 197N]
 gi|115422762|emb|CAJ49290.1| flagellar biosynthetic protein [Bordetella avium 197N]
          Length = 380

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 184/354 (51%), Gaps = 13/354 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+   KTEA S +++E A  EG    SRE + F  +LA  +  L+   P +Y   S + 
Sbjct: 3   DDSDLEKTEAASPRRLEKAREEGQIARSRELTTFL-MLAAGVGGLWLVGPSLYRGLSGVM 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLN 121
                   R   D + +V         A   ++P  G+L+     +GS ++  + V +  
Sbjct: 62  RDGMGFDPRITHDTTAMVNQAVIGFGQAIWAILPVFGILVVAAL-LGSVMLGGL-VFSGK 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++    +++   G+KRI+S   LV  +K+  K +LVG +    +   +  ML  +   P
Sbjct: 120 PLEFKASKLNPLSGLKRIFSSQTLVELIKASAKALLVGGVAGWVIWRYHDEMLGLMHVPP 179

Query: 182 HSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            + L  A     K++++   FI +    + ++D+ W       KL+MSK++++ E K+S 
Sbjct: 180 PAALASAL----KLVVLCCAFIVSSLMLVVLIDVPWQIWSHLKKLRMSKEDVRQEHKESE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK R +   R+  R +MM    RA +++TNPTHYA+AL Y ++   AP ++AKG  
Sbjct: 236 GDPHIKARIRQQQRAAARRRMMSQVPRADVVVTNPTHYAVALSYDESGGGAPTVIAKGTG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           L+A ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++ 
Sbjct: 296 LVAARIRELAAEHRIPTLEAPPLARALHQHVELGHEIPAALYTAVAEVLAWVFQ 349


>gi|15596646|ref|NP_250140.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAO1]
 gi|107100883|ref|ZP_01364801.1| hypothetical protein PaerPA_01001913 [Pseudomonas aeruginosa PACS2]
 gi|116049394|ref|YP_791803.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892678|ref|YP_002441547.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa LESB58]
 gi|254234548|ref|ZP_04927871.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719]
 gi|254239799|ref|ZP_04933121.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192]
 gi|296390184|ref|ZP_06879659.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAb1]
 gi|313106448|ref|ZP_07792679.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016]
 gi|9947400|gb|AAG04838.1|AE004574_9 flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PAO1]
 gi|115584615|gb|ABJ10630.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166479|gb|EAZ51990.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719]
 gi|126193177|gb|EAZ57240.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192]
 gi|218772906|emb|CAW28718.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa LESB58]
 gi|310879181|gb|EFQ37775.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016]
          Length = 378

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 194/363 (53%), Gaps = 21/363 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  +A  +G  P SRE +  + ++A    LL + +     +  
Sbjct: 1   MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGA----DLAG 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSA---SRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  L+ S  +   E   +   +L  L  SA   ++ + P LL+ ++  I   +     +
Sbjct: 57  ALLRLMRSNFELSRETAMNTESMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWL 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +++ ++P F R++   G+KR++S  +L+   K+ +K ++V  +  + L+ +     D +
Sbjct: 117 FSMDALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADR----DAL 172

Query: 178 SANPHSILYHAFF-TVRKV------LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
            A  H  L  A   +VR V      +   LL IA + V    W   Q   KL M+KQE++
Sbjct: 173 LALAHQPLEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQ---KLLMTKQEVR 229

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE K S G P +K++ + + R   + +MM A   A ++ITNPTH+A+AL+Y      AP+
Sbjct: 230 DEYKDSEGKPEVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPL 289

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           L+AKG + +A K+R++A EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y
Sbjct: 290 LLAKGNDFLALKIREVAQEHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVY 349

Query: 351 HKK 353
             K
Sbjct: 350 QLK 352


>gi|320116065|ref|YP_004186224.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|319929156|gb|ADV79841.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 363

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73

Query: 68  --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +  IPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|88800470|ref|ZP_01116034.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp.
           MED297]
 gi|88776800|gb|EAR08011.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp.
           MED297]
          Length = 378

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 185/362 (51%), Gaps = 23/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE P+ +K+E A  +G+   S+E +  + ++   I  L F   G    T+
Sbjct: 1   MAEQDTSQEKTEEPTPRKLEKAKEDGDIARSKELNTSAILIVSAICFLVF---GRMMGTT 57

Query: 61  DLHVL--LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLI 112
            + ++    S   R   D+      ++ ++  A   ++P     ++       G+G +  
Sbjct: 58  MMRIMEFCFSFDPRASWDVIVAGEYVSVVAGEALLSIVPLFGFLLLAALFAPIGLGGW-- 115

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTEN 169
                 +   + P   R++   GIKR++S+N+LV  +K + K+I+V T   ++ ISL   
Sbjct: 116 ----NFSTKALAPKGSRMNPLSGIKRMFSMNSLVELLKGWGKVIVVATAAILVLISLKNE 171

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           + +M   +     S + HA   +    +++      + ++DI +  +    KL+M+ QEI
Sbjct: 172 FLSM---VFQPTESAITHAVEVIAWSFLLLAASTVLIAIVDIPFQIYSHTKKLRMTMQEI 228

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E K + G P +K + K + R     +MM     A +IITNPTHYA+AL+Y      AP
Sbjct: 229 KEEYKNTEGKPEVKAKIKQLQREMANRRMMSDVPEADVIITNPTHYAVALKYDPNAMPAP 288

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           ++VAKG + +A K+R+I  E+++P+ E P+LARS++    I   IP   Y AVAQ++  I
Sbjct: 289 LMVAKGVDEVAFKIREIGQEYDVPVLEMPALARSIYHHTRIGDEIPEGLYVAVAQVLAYI 348

Query: 350 YH 351
           Y 
Sbjct: 349 YQ 350


>gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium
           ljungdahlii DSM 13528]
 gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium ljungdahlii DSM 13528]
          Length = 606

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 192/354 (54%), Gaps = 14/354 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  D+  +G    S+E  L  ++LA  + +      G Y  TS    +
Sbjct: 261 AKDDKTEEATPKKKSDSRKKGQIARSKEIGLTMTLLASTLVIAVL---GGYVGTSLGSTM 317

Query: 66  LASA-----TQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           +A       T      ++ I+F+ +  +++    + +P L +    G+ + ++Q   ++ 
Sbjct: 318 VAFLNDYINTSLNYSSVNKIMFITIWRIAIVFLPIAVPILAI----GVLANMVQTRGLIT 373

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP F +++   G KR++S  +++  +K    + +VG +    + +NY  +L+    
Sbjct: 374 FETLKPDFSKLNPISGFKRMFSARSVMELLKDTAIVSIVGYVGYKFIKDNYMYILNLGQL 433

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  ++          +   I L +  + +LD  +  +Q+   L+MSKQEIK+E KQ  G+
Sbjct: 434 DSRAVAKAIGSLAVGIFFRITLIMLIIAILDYMFQRYQYNKDLRMSKQEIKEEFKQDEGD 493

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK +++   R     +MM+   +AT+++TNPTH A+AL+Y + +N APVLVAKG + +
Sbjct: 494 PQIKGKRRQKQRELAMRRMMQEVPKATVVVTNPTHVAVALKYEEGQN-APVLVAKGLDAV 552

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+++IA ++++PI E   LAR ++K+V I+  IP   Y+AVA+++  +Y  +
Sbjct: 553 ALKIKEIAKDNDVPIIENRPLARLIYKEVEIDMEIPAEMYQAVAEILALVYKMR 606


>gi|167037650|ref|YP_001665228.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856484|gb|ABY94892.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 360

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL 
Sbjct: 11  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70

Query: 68  --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 71  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 130

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 131 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 310

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +  IPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 311 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358


>gi|229918645|ref|YP_002887291.1| flagellar biosynthesis protein FlhB [Exiguobacterium sp. AT1b]
 gi|229470074|gb|ACQ71846.1| flagellar biosynthetic protein FlhB [Exiguobacterium sp. AT1b]
          Length = 364

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 189/354 (53%), Gaps = 19/354 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGI----YSVTSDL- 62
            KTE  + +K ED+  +G   +++ A L  +  L  +  +L FF P I     ++ SDL 
Sbjct: 18  EKTEKATPRKREDSRKKGQ--VAKSADLTGAFALFAMFLMLSFFGPVIGQQLLTLISDLL 75

Query: 63  --HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LL + T         +  ++  L L    ++ P  ++ ++FGI    +Q   + +L
Sbjct: 76  SPEYLLFNVT-------GGMSDMVVDLMLRVGLILAPFFIVAVVFGILINYLQIGTLFSL 128

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179
             ++P  +R+   +G+KRI S+  +V F+KS  K++++ T     L +N   +    +  
Sbjct: 129 EAIQPKLERIDPIKGVKRIVSMKAVVEFLKSLFKLLIILTTAVAVLWKNQKELSRMAVEQ 188

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              SI+  A  T+   L + +  +A L  LD  +    +   ++MSKQ+IKDE K + G+
Sbjct: 189 VRESIVALASITIELGLWVSVALLA-LAFLDFFYQRFDFEKSIRMSKQDIKDEYKNTEGD 247

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK++ K   R     +MM+    A ++ITNPTHYA+ +RY  T++ AP++VAKG + +
Sbjct: 248 PLIKSKIKQQQREMAMRRMMQEIPNADVVITNPTHYAVVIRYDDTKDFAPLVVAKGVDRV 307

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +R +A EH++ I E   LAR+L+ Q+ I   +   FY+A+A+++  +Y  K
Sbjct: 308 AFHIRDVAKEHDVAIVENKPLARALYAQIDIGEVVDESFYQAIAEVLAFVYQMK 361


>gi|170702808|ref|ZP_02893660.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria
           IOP40-10]
 gi|170132277|gb|EDT00753.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria
           IOP40-10]
          Length = 399

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 29/357 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           ++TEA + ++ E A  EG    SRE + F+ + A         +P          G ++ 
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    +E ++ ++ +L    L+A               +G +LI +
Sbjct: 68  DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAAL---------LAPMALGGWLISQ 118

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    S L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G NL+A ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y 
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349


>gi|168704083|ref|ZP_02736360.1| flagellar biosynthesis protein FlhB [Gemmata obscuriglobus UQM
           2246]
          Length = 355

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 177/346 (51%), Gaps = 2/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+   ++KTE P+ ++ E+A  +G  P S E  + S +L   +  L +  P +++   
Sbjct: 1   MAEDVDQESKTEDPTPRRREEARRQGQVPFSAEL-VGSLVLVAGVLGLRYLGPDLWATMI 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +         R+    +    LL   +L     ++P   L +  G+G+ + Q    LN 
Sbjct: 60  TVFRADLPRVGREEFGTAEAAELLGRTALRMIGAMLPFFGLLLAVGVGASVAQVGFQLNT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P+  +++   G+ R++S+ ++V  + +  K++ +  +    L      +       
Sbjct: 120 EKLEPNLDKLNPVGGLGRLFSLGSVVRGLLTVAKVLALAGVAYYVLNGRGGLIASIGMGR 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                  A+  V ++ + +   +A + V D  +  +++   L M+K+E+K E+KQ  G+P
Sbjct: 180 IGEAAPVAWALVMRLALYLAGAVALVAVFDYAYQRYKFEQSLMMTKEELKQELKQEEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + IAR R + KM+    +AT+++TNPTHYA+ALRY    + APV+VAKG+   A
Sbjct: 240 HVKARVRQIARERTKRKMLSEVPKATVVVTNPTHYAVALRYDSNRDSAPVVVAKGKGAFA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++ K A E  +P+ E P LAR+L   V     IP   ++AVA+++
Sbjct: 300 LRIAKRARESGVPVLERPPLARALH-SVREGQQIPSALFRAVAEVL 344


>gi|330953765|gb|EGH54025.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae Cit 7]
          Length = 378

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-DIALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|66046670|ref|YP_236511.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257377|gb|AAY38473.1| Flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           syringae B728a]
 gi|330899444|gb|EGH30863.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 378

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-DIALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|268589991|ref|ZP_06124212.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131]
 gi|291314710|gb|EFE55163.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131]
          Length = 383

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 187/354 (52%), Gaps = 12/354 (3%)

Query: 4   NDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-----IYS 57
           +D  D  KTE P+  K + A ++G    S+E S    +LA +   L + S G     +  
Sbjct: 2   SDESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVS--LLWLSGGHLAAQLRQ 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +T    +      Q     IS++  +++  +L A   VI GL L    GI +  +    V
Sbjct: 60  ITRQGFIFDGHYLQNTGLMISYLGRVVSE-ALFALLPVIGGLALV---GISASSLVGGLV 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            N   +K   K+++  +G+KRI+S+N L    K+ +K + VG    I L +++ ++L  +
Sbjct: 116 FNSKLIKFDLKKLNPIKGLKRIFSMNALSELFKAVLKSLFVGLGAFIFLWQSWPSLLHLV 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +P + L +A   V     +I+  +  +   D+ + +     KL+MS+QEIKDE KQ  
Sbjct: 176 MESPVTALSNALQKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK + +   R+  R++MM     A +I+TNPTHYA+AL+Y   +  AP ++AKG  
Sbjct: 236 GDPQIKAKIRQQQRAIARNRMMADVPNADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++A+++++I  EH I   E P LAR+L++   I  +IP   Y AVA+++  +Y 
Sbjct: 296 VLAQRIKEIGEEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQ 349


>gi|150020741|ref|YP_001306095.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis
           BI429]
 gi|149793262|gb|ABR30710.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis
           BI429]
          Length = 377

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 193/356 (54%), Gaps = 17/356 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE  + ++ + A  EG  PISRE +   + LA ++   F     I  + S +   
Sbjct: 29  ADPDKTEKATPRRRQKAREEGQVPISRELTSGFTFLAAVLGFAFLGRGIILGLESAVAFF 88

Query: 66  --LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF----MMFGIGSYLIQRIPVLN 119
             L S     + D+    F       +A + +I  L++F    M+ GI    +Q   +  
Sbjct: 89  AELPSYDTININDLGIYAF-------NAFKGLIIDLVIFVGIIMVTGIAVGSLQTKFLFT 141

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-- 177
              +K  F +++   G+KR++S+ +L   +KS +K+++VG +  + +  N+  ML  I  
Sbjct: 142 FKSLKLDFSKINPINGLKRMFSLRSLFELLKSILKLVIVGYVGYLVIKSNWNKMLLAIDK 201

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S    S+L         +   I LFI  +++ D  +S +++   ++M+KQE+K+E K+  
Sbjct: 202 SVKDGSLLIWDITFELLIKCGIALFI--VSIADYFFSRYEYEKNIRMTKQEVKEEFKEVE 259

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK +Q+ I      H+MM+    AT++ITNPTH+A+A++Y   E + P++VAKG +
Sbjct: 260 GNPEIKRKQREIMMQYSMHRMMQEVPEATVVITNPTHFAVAIKYEVDEMEVPIVVAKGMD 319

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A+K++K+A E+N+PI   P LAR L+  V +   IP  FY+AVA+++  +Y  K
Sbjct: 320 NLAEKIKKVARENNVPILRNPKLARELYFNVDVGDEIPEKFYRAVAEVLAYVYSLK 375


>gi|161523355|ref|YP_001578367.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC
           17616]
 gi|189351872|ref|YP_001947500.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC
           17616]
 gi|160340784|gb|ABX13870.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans ATCC
           17616]
 gi|189335894|dbj|BAG44964.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
           17616]
          Length = 399

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 179/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           ++TEA + ++ E A  EG    SRE + F+ + A         +P          G ++ 
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    LE ++ ++ +L     +A               +G +LI  
Sbjct: 68  DRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAAL---------LAPMALGGWLI-- 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
               +    +  F R++   G+ RI+SI   +    S  K ++VG I  +++  +   +L
Sbjct: 117 ----SPKTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351


>gi|311105926|ref|YP_003978779.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8]
 gi|310760615|gb|ADP16064.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8]
          Length = 384

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 177/343 (51%), Gaps = 1/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTEA S +++E A  EG    SRE   F  +LA  +  ++     +Y   + +      
Sbjct: 8   EKTEAASPRRLEKAREEGQIARSRELGTFM-MLAAGVGAIWAGGSSLYRTLTGVLRNGLG 66

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             QR + D   +V         A  +++P   L  +  + S ++    V++   ++ +F 
Sbjct: 67  FDQRIVADPGVMVERAVEGFGQALLVLLPIFGLLAVIAVLSSVLLGGLVISGKPLQFNFS 126

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S   G+KR++S   +V  +K+  K +LVG +    +   +  ML  +   P + L  A
Sbjct: 127 KLSPISGVKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLSLMHVAPSAALVKA 186

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V      I+  +  + +LD+ W       KL+MSK++++ E K+S G+P +K R + 
Sbjct: 187 LTLVAMCCAFIVASLIVIVMLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDPHVKARIRQ 246

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R   R +MM    +A +++TNPTHYA+AL+Y + ++ AP ++AKG  LIA K+R++A 
Sbjct: 247 QQRQAARRRMMSEVPKADVVVTNPTHYAVALKYDEEKSGAPRVLAKGTGLIAAKIRELAA 306

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           E+ IP  E P LAR+L + V I   IP   Y AVA+++  ++ 
Sbjct: 307 ENRIPTLEAPPLARALHQHVEIGQEIPAELYTAVAEVLAWVFQ 349


>gi|330502779|ref|YP_004379648.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
 gi|328917065|gb|AEB57896.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
          Length = 378

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 193/362 (53%), Gaps = 23/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +K+E P+ K++E++  +G    S+E +  +  L   + L+ F   G Y    
Sbjct: 1   MAESESGADKSEEPTGKRLEESRKKGQIARSKELNTLAVTLTGTVALIIF---GAYMGNV 57

Query: 61  DLHVLLASATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            + ++  + +  +   + + S  ++LL      A   V P LL  ++  +   +     +
Sbjct: 58  LMDIMRGNFSLPREVLMSERSMALYLLAS-GKEALLAVQPFLLALLIASVAGPIALGGWL 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISLTENYFTMLD 175
            +   ++P   R++   G+KR++S+  LV  +K+  K  +IL   ++ +++ ++    + 
Sbjct: 117 FSAEALQPKASRMNPLAGLKRMFSVQALVELVKALAKFLVILAVALVVLAIDQDDLLAIA 176

Query: 176 FISANP---HS---ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
                P   HS   + + AF+     L   L+ IA + V    WS+ Q   KL M+KQE+
Sbjct: 177 NEPVEPAILHSLRVVGWSAFW-----LSCGLILIAAVDVPFQLWSHKQ---KLMMTKQEV 228

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE K + G P +K R + + R     +MM+A  +A ++ITNPTH+A+AL+Y   +  AP
Sbjct: 229 RDEYKDTEGKPEVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAP 288

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +L+AKG + +A K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +
Sbjct: 289 MLLAKGGDFLALKIREIAQEHQVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYV 348

Query: 350 YH 351
           Y 
Sbjct: 349 YQ 350


>gi|269138573|ref|YP_003295273.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202]
 gi|267984233|gb|ACY84062.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202]
 gi|304558582|gb|ADM41246.1| Flagellar biosynthesis protein FlhB [Edwardsiella tarda FL6-60]
          Length = 440

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 177/350 (50%), Gaps = 11/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+  +IE A  +G  P SRE    +SIL     L      G Y +   L V++A 
Sbjct: 60  EKTEDPTPHRIEKAREKGQIPRSRE---LTSILMLATGLAILLLGGEY-LARALAVMIAQ 115

Query: 69  ATQRK---LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                   L +   ++  L  L   A   ++P LL  M+ G  + ++    + + + +K 
Sbjct: 116 GLHFDHLLLSNDRQMLIQLGMLLQQAVAALMPVLLGLMLVGWCAPMLIGGFLFSPSSIKC 175

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++   G KR++S   L   +K  +K  LVG +    L   +  ML  I+      +
Sbjct: 176 DLNRLNPLSGFKRMFSSQVLAELLKGILKATLVGWVCGWFLLHYWPRMLRLITEPTLDAM 235

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYGNPIIK 243
             A   V    ++++L +  +   D+   Y  W   SKL+M+KQEIKDE K+  G+P +K
Sbjct: 236 GDALHLVGMCGLLVVLGLLPMVGFDV--FYQVWSNLSKLRMTKQEIKDEFKEQEGDPHVK 293

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   IA+++
Sbjct: 294 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIAQRI 353

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +  EH IP  E P LAR+L++   I  AIP   Y AVA+++  +Y  K
Sbjct: 354 KALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 403


>gi|221202387|ref|ZP_03575420.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans
           CGD2M]
 gi|221208974|ref|ZP_03581970.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2]
 gi|221171096|gb|EEE03547.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2]
 gi|221177801|gb|EEE10215.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans
           CGD2M]
          Length = 399

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 178/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           ++TEA + ++ E A  EG    SRE + F+ + A          P          G ++ 
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQAMLRGAFAF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    LE ++ ++ +L     +A               +G +LI  
Sbjct: 68  DRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAAL---------LAPMALGGWLI-- 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
               +    +  F R++   G+ RI+SI   +    S  K ++VG I  +++  +   +L
Sbjct: 117 ----SPKTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351


>gi|188533614|ref|YP_001907411.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99]
 gi|188028656|emb|CAO96518.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99]
          Length = 383

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 186/351 (52%), Gaps = 7/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE+P++ ++E A  EG  P SRE    +SIL  +  L   +  G + +   L 
Sbjct: 3   QDSDQEKTESPTAHRLEKAREEGQIPRSRE---LTSILMLIAGLSILWGGGEW-MGRKLG 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LLA         + D S ++  + +L   A   V+P +   ++  I + ++    VL+ 
Sbjct: 59  ALLADGLVFNHSMVSDTSQMLRQIANLLQQAVLAVLPMMFGLVVVAIAAPMLLGGLVLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ ++ S  +    +K+ +K  LV  +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDLGKMNPIKGLAKLVSAQSAAELLKAVLKATLVSIVCGLYIWHHWAEMLRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PITALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP ++AKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++  E+ IPI E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 299 LRIRELGAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQ 349


>gi|330445379|ref|ZP_08309031.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489570|dbj|GAA03528.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 376

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 196/359 (54%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  + +TE  + +++E A  +G  P SRE +  + +++  + L++F   G+     
Sbjct: 1   MSDSDGQE-RTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWF-GEGLSKALG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG--IGSYLIQRIPVL 118
            +   + S T+  + D+  + F++   ++    L +  +L+F+ F   IG+  +  +   
Sbjct: 59  QIMTAMFSLTREDIFDLDRL-FVIIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVR-F 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM-L 174
           +     P F +++   GIKR++ + + V  +KS +K+ LVG++   +  S  E++F + +
Sbjct: 117 SPQAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSSLEDFFQLSI 176

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
           +   AN     +HA   +   +++I   +  +  +D+ +    +  +LKM+KQEIKDE K
Sbjct: 177 EVFPAN----YFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            S G P +K R + + R   + +MM    +A ++ITNP H+++ALRY    + APV++AK
Sbjct: 233 DSEGKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A K+R++A +HNI I     LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 293 GGDHLALKIREVANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351


>gi|307720616|ref|YP_003891756.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM
           16294]
 gi|306978709|gb|ADN08744.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM
           16294]
          Length = 350

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 189/356 (53%), Gaps = 30/356 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHV 64
            KTE P+ KKIEDA  EGN P S++AS    LF +IL  L+   F     I+       +
Sbjct: 6   EKTEEPTPKKIEDARKEGNVPKSQDASGVLTLFVAILGVLMLFPFMAEHMIHLFRYYFSL 65

Query: 65  LLASATQRKLEDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           +     +    DI+ +    FLL  L L A+ + I G++        + L Q   +    
Sbjct: 66  IGMPVDKLFAMDIAIVTIKEFLLMVLPL-ATAVAISGVI--------AALAQFGFLFTTK 116

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            + P FK++   +G K ++S+  L+  +K  +K     +  T+ +   +F    FI   P
Sbjct: 117 AIMPDFKKIDPIKGTKNLFSLKKLIEGVKVTLK-----SFTTLGVGFIFF--FYFIQELP 169

Query: 182 HSILY--HAFFTVRKVLIMILLFIATLTVLDIGWSY-----HQWYSKLKMSKQEIKDEIK 234
              L+  H      K  ++I+ F+    +             Q++  LKMSKQEIKDE+K
Sbjct: 170 TVALFGLHDQLMWLKDKMIIIAFVMLFIIFIFAIIDVIIVRKQYFDGLKMSKQEIKDEMK 229

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
              G+P+IK++ + I     + +MM     A ++ITNPTHYA+A++Y ++++ AP++VAK
Sbjct: 230 NMEGDPLIKSKIRQIQMEASKKRMMAEVPNADVVITNPTHYAVAIKYDESKSHAPLVVAK 289

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           G + IA++++KIA E+++ I + P LARSL+K+V ++  IP   + AVA+++  +Y
Sbjct: 290 GMDNIAQQIKKIARENSVHIVQNPPLARSLYKEVDVDKPIPEALFSAVAEVLAYVY 345


>gi|109899339|ref|YP_662594.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica
           T6c]
 gi|109701620|gb|ABG41540.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica
           T6c]
          Length = 374

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 180/362 (49%), Gaps = 33/362 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIYSVTSDL 62
           + KTE P+SKKI D+  +G    S+E S     +FS+  A  I +    +  IY VT   
Sbjct: 5   NEKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSA--AAFIMMGGQIAKAIYLVTQRT 62

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN- 121
             L    ++ +  D +H+         SA   V   ++L+M+    + +   I +   N 
Sbjct: 63  FTL----SRDETYDFTHMF----QAWGSAIETVATPVMLYMVIITAAGIYGNIALGGYNF 114

Query: 122 ---HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
                 P   +++   G KR++ +N LV  +K+  K+I+V       +   Y  ML F  
Sbjct: 115 TWQGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVV-------MGMAYVAMLVFKD 167

Query: 179 ANPH-------SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
              H         L+HA   +    +M+   +  +   D+ +  ++   ++KMSKQE+KD
Sbjct: 168 EALHLDLELYPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKD 227

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G+P +KNR + +      ++MM+    A +++TNPTHY++AL+Y Q    APVL
Sbjct: 228 ENKNAEGDPQVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVL 287

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + +A  +RKIA  H +PI   P LAR+++    + S IP   + AVAQ++  ++ 
Sbjct: 288 VAKGVDEMAMHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPAKLFMAVAQILAYVFQ 347

Query: 352 KK 353
            K
Sbjct: 348 LK 349


>gi|332305672|ref|YP_004433523.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173001|gb|AEE22255.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 374

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 180/362 (49%), Gaps = 33/362 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIYSVTSDL 62
           + KTE P+SKKI D+  +G    S+E S     +FS+  A  I +    +  IY VT   
Sbjct: 5   NEKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSA--AAFIMMGGQIAKAIYLVTQRT 62

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN- 121
             L    ++ +  D +H+         SA   V   ++L+M+    + +   I +   N 
Sbjct: 63  FTL----SRDETYDFTHMF----QAWGSAIETVAGPVMLYMVIITAAGIYGNIALGGYNF 114

Query: 122 ---HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
                 P   +++   G KR++ +N LV  +K+  K+I+V       +   Y  ML F  
Sbjct: 115 TWQGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVV-------MGMAYIAMLVFKD 167

Query: 179 ANPH-------SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
              H         L+HA   +    +M+   +  +   D+ +  ++   ++KMSKQE+KD
Sbjct: 168 EALHLDLELYPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKD 227

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G+P +KNR + +      ++MM+    A +++TNPTHY++AL+Y Q    APVL
Sbjct: 228 ENKNAEGDPQVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVL 287

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + +A  +RKIA  H +PI   P LAR+++    + S IP   + AVAQ++  ++ 
Sbjct: 288 VAKGVDEMAMHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPTQLFMAVAQILAYVFQ 347

Query: 352 KK 353
            K
Sbjct: 348 LK 349


>gi|115350237|ref|YP_772076.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria AMMD]
 gi|115280225|gb|ABI85742.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria AMMD]
          Length = 399

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 179/357 (50%), Gaps = 29/357 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           ++TEA + ++ E A  EG    SRE + F+ + A         +P          G ++ 
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    +E ++ ++ +L    L+A               +G +LI +
Sbjct: 68  DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAAL---------LAPMALGGWLISQ 118

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLAMSLAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    S +  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G NL+A ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y 
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349


>gi|134294343|ref|YP_001118078.1| flagellar biosynthesis protein FlhB [Burkholderia vietnamiensis G4]
 gi|134137500|gb|ABO53243.1| flagellar biosynthetic protein FlhB [Burkholderia vietnamiensis G4]
          Length = 399

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 180/360 (50%), Gaps = 31/360 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIY---------- 56
           ++TEA + ++ E A  EG    SRE + F+ +LA   Y  +  S   G +          
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFA-LLAAGFYGTWLVSGPSGAHLQTMLRSAFT 66

Query: 57  ---SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
              +   D H +L++A     E ++ ++ +L    L+A               +G +LI 
Sbjct: 67  FDRATAFDTHRMLSAAGTASAEGLAAVLPILALTGLAAL---------LAPMALGGWLIS 117

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
           +         +  F R+    G+ R++SI   +    S  K ++VG I  +++  +   +
Sbjct: 118 Q------KTFELKFDRLDPIAGLGRMFSIQGPIQLAMSVAKTMVVGGIGGVAIWRSKDEL 171

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L   +    + L  A   V       +  +  L  LD+ +   Q+  KL+M+K+E+K E 
Sbjct: 172 LGLATQPLGAALADALHLVAVCCGTTVAGMLVLAGLDVPYQLWQYNKKLRMTKEEVKREH 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           +++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VA
Sbjct: 232 RENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 292 KGVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|90579940|ref|ZP_01235748.1| flagellar biosynthesis protein [Vibrio angustum S14]
 gi|90438825|gb|EAS64008.1| flagellar biosynthesis protein [Vibrio angustum S14]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 194/358 (54%), Gaps = 12/358 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  + +TE  + +++E A  +G  P SRE +  + +++  + L++F   G+    S
Sbjct: 1   MSDSDGQE-RTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWF-GEGLSKALS 58

Query: 61  DLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            +   + S T+  + D+  + V +L  +    + L +  + LF+   IG+  +  +   +
Sbjct: 59  HIMTAMFSLTRDDIFDLDRLFVIILDAIVYVLAPLFLVLIFLFVAAFIGAAGVGGVR-FS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDF 176
                P   +++   GIKR++ + + V  +KS +K+ LVG+I   +  S  E++F + + 
Sbjct: 118 TQAAMPKLSKMNPLSGIKRMFGMQSWVELIKSILKVGLVGSIACYLIFSSLEDFFQLSNE 177

Query: 177 I-SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +  AN     +HA   +   +++I   +  +  +D+ +    +  +LKM+KQEIKDE K 
Sbjct: 178 VFPAN----YFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKD 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G P +K R + + R   + +MM    +A ++ITNP H+++ALRY    + APV++AKG
Sbjct: 234 SEGKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A K+R+IA +HNI I     LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 294 GDHLALKIREIANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351


>gi|330940692|gb|EGH43704.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 378

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGS-DIALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|262276382|ref|ZP_06054191.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
 gi|262220190|gb|EEY71506.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
          Length = 377

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 186/375 (49%), Gaps = 46/375 (12%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE------------------ASLFSSILA 42
           M+END    +TE  + ++ + A  +G  P SRE                   SL ++++A
Sbjct: 1   MAENDG-QERTEDATPRRQQQAREKGQVPRSRELASVAVLVVGAVALMWFGESLGNALMA 59

Query: 43  CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
            +  L       I+ VTS L ++   A       I HI + +T + L    L I GL+  
Sbjct: 60  MMRKLFTLTREEIFDVTS-LGLIGYGA-------IFHIFWPITFILLM---LFIAGLIGA 108

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI- 161
              G  S+        +    +P   ++S  +GIKR++   + V  +KS +K+ LV  + 
Sbjct: 109 SALGGVSF--------SWEAARPKLSKMSPLQGIKRMFGKQSWVELIKSILKVALVSGVA 160

Query: 162 ---ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
              +  SL + Y   ++    N    LYHA   +   +++I   +  +  +D+ +   Q 
Sbjct: 161 FYLMWASLNDFYQLSIETFPTN----LYHALDILLNFVLLICCSLLVVVAIDVPFQIWQH 216

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
             +LKM+KQEIKDE K++ G P +K R + + R   + +MM     A ++ITNP HY++A
Sbjct: 217 NEQLKMTKQEIKDEYKETEGKPEVKGRIRMLQREMAQRRMMAEVPSADVVITNPEHYSVA 276

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           LRY    + APV+VAKG + +A K+R+IA EH+I I   P LAR+++    +   IP   
Sbjct: 277 LRYDSKMDKAPVVVAKGSDFLALKIREIAAEHDITIVPAPPLARAVYYSTELEQQIPDGL 336

Query: 339 YKAVAQLIYKIYHKK 353
           + A+AQL+  ++  K
Sbjct: 337 FTAIAQLLAYVFQLK 351


>gi|119503678|ref|ZP_01625761.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2080]
 gi|119460740|gb|EAW41832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2080]
          Length = 384

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      +TE P++K+++ A  +G    SRE +    +L C + L       + +VT 
Sbjct: 1   MAEEQTGQERTEEPTAKRLQQAREKGQVARSRELNTLLMLLPCAVALWLTGEFAMDAVTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L   ++  ++  S +   L    +S   +++P L L +   +    +    + +L
Sbjct: 61  LFTGALTPPSE-AMKVTSEVAPFLGATLMSGLEMIVPFLALTVFVALLGPSVMGGLIFSL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++   +G  RI+S  +L+  +KS +K  LV  +  + L      ++  IS  
Sbjct: 120 KSMSPGLDKIDPIKGFGRIFSRKSLLELVKSLLKFFLVSGVAVLVLLSFEREVMGLISLP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYG 238
               +  A   +  +L +I L  + + V+ I   +  W    KL+M+KQE+KDE+K++ G
Sbjct: 180 VGEGIAQAGRMI--MLTLIFLSASLILVVAIDVPFQLWDHTRKLRMTKQEVKDEMKETDG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP +K + +   R     +M+     A ++ITNPTH+++AL+Y Q  N AP ++AKG + 
Sbjct: 238 NPEMKGKIRQKQREIADRRMLADVPTADVVITNPTHFSVALKYDQEGNTAPRVLAKGADH 297

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A ++R IA  H+I I+EEP LAR+LF        IP   + AVA+++  ++H
Sbjct: 298 MAMQIRHIARAHDIVIYEEPPLARALFASTEAGDEIPGNLFLAVARVLAYVFH 350


>gi|238919250|ref|YP_002932765.1| flagellar biosynthetic protein FlhB, [Edwardsiella ictaluri 93-146]
 gi|238868819|gb|ACR68530.1| flagellar biosynthetic protein FlhB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 388

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 176/350 (50%), Gaps = 11/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+  +IE A  +G  P SRE    +SIL     L      G Y +   L  ++A 
Sbjct: 8   EKTEDPTPHRIEKAREKGQIPRSRE---LTSILMLAAGLAIMLLGGEY-LAHSLAEMIAQ 63

Query: 69  A---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                QR L +   ++  L  L   A   ++P L   M+ G  + ++    + + + +K 
Sbjct: 64  GLNFDQRLLSNDKQMLIQLGMLLQQAVAALMPVLFGLMLVGWCAPMLIGGFLFSPSSIKC 123

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++   G KR++S   L   +K  +K  LVG +    L   +  ML  ++      +
Sbjct: 124 DLNRLNPLSGFKRMFSSQVLAELLKGILKAALVGWVCGWFLLHYWSRMLRLVTEPTLDAM 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYGNPIIK 243
             A   V    ++++L +  +   D+   Y  W   SKL+M+KQEIKDE K+  G+P +K
Sbjct: 184 GDALHLVGMCGLLVVLGLLPMVGFDV--FYQVWSNLSKLRMTKQEIKDEFKEQEGDPHVK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +I+TNPTHYA+AL+Y + +  AP ++AKG   +A+++
Sbjct: 242 GRIRQQQRAAARRRMMSDVPGADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEVAQRI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +  EH IP  E P LAR+L++   I  AIP   Y AVA+++  +Y  K
Sbjct: 302 KALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 351


>gi|197285519|ref|YP_002151391.1| flagellar biosynthesis protein FlhB [Proteus mirabilis HI4320]
 gi|227356013|ref|ZP_03840404.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
 gi|194683006|emb|CAR43467.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
 gi|227163790|gb|EEI48698.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
          Length = 382

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 180/358 (50%), Gaps = 17/358 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  +G    S+E    SS+L  L  +   +  G + +T 
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKE---LSSVLMILGGVSLLWMSGRF-ITR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPV 117
           +L+ +L          I +   L+   +    + V    P  L  ++  IG   +     
Sbjct: 56  ELYAMLTEGFTFNHHIIGNENLLIPRFASLMKQAVFALSPVFLGLVLVAIGGSAVLGGIN 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +K   K+ +   G+KRI+S+N L    K+ +K + VG   T+ L  N+  +L  I
Sbjct: 116 FSSKSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSLFVGLAATVFLWHNWNDILHLI 175

Query: 178 SANPHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +  P S L +A    +  V I + + I  +   DI +       KL+M++QEIKDE KQ 
Sbjct: 176 TLPPLSALANAMQLLIFAVYIAVFMLI-PMVAFDIIFQIRSHLKKLRMTRQEIKDEFKQQ 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND---APVLVA 293
            G+P +K R +       R +MM    +A +I+TNPTHYA+AL+Y    ND   AP ++A
Sbjct: 235 EGDPQLKARIRQQQHEMSRRRMMADVPKADVIVTNPTHYAVALQY----NDKMVAPKVLA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG   IA K+++I  EH IP+ E P LAR+L++   I  AIP   Y AVA+++  +Y 
Sbjct: 291 KGAGAIALKIKEIGAEHRIPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQ 348


>gi|253996636|ref|YP_003048700.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8]
 gi|253983315|gb|ACT48173.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8]
          Length = 387

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 180/356 (50%), Gaps = 21/356 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S K++E A  EG+ P SRE +  + +LA  + +L         +   L   ++S
Sbjct: 8   EKTEDASPKRLEQAREEGDVPRSRELATVTVLLAAGLAMLMMGG----QLADALKTSMSS 63

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
               +       + LL  +S +   L++   P  L+     I S  +    V +   + P
Sbjct: 64  GLSFQRAYAYDPMLLLMKISDNIYNLLLAFSPLALILFFVAIASPALIGGWVFSEKALIP 123

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-------FTMLDFIS 178
            F +++   G   ++S N+L   +KS  K ILVG +  + ++ +           LD   
Sbjct: 124 KFGKLNPITGFSNMFSKNSLAELIKSIAKAILVGFVSYVVISHDMESILSLSLLPLDQSI 183

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           A  + +L  +F  +  VL++I         +D+ +  +Q+  KLKM+K+E+K E K+S G
Sbjct: 184 AELNHLLLTSFLAIVSVLVLI-------AAIDVPFQLYQYADKLKMTKEEVKRESKESDG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP IK+R +   R   R +MM     A ++ITNPTHYA+A++Y +    APV+VAKG + 
Sbjct: 237 NPEIKSRIRQQQREMARRRMMAEIPNADVVITNPTHYAVAIKYKEGGMLAPVVVAKGADA 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           IA K+R+ A EH + I E P LAR+++    +   IP   Y AVA+++  ++  +I
Sbjct: 297 IALKIREAAEEHKVLIVEAPKLARAIYTHTELTHEIPEALYTAVAEVLAYVFQMRI 352


>gi|27885003|gb|AAD56298.2| FlhB [Pseudomonas putida]
          Length = 380

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 186/357 (52%), Gaps = 12/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +     L     LL F      ++ +
Sbjct: 1   MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVVLTLGGAGALLTFGGHLAETLLT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLT--HLSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115
            + +  +      +++ +   FLL    +++ A + V+  L +  + G   +G +L    
Sbjct: 61  LMRMNFSLTRDVIVDERAMGAFLLASGKMAIWAVQPVLGLLFVLALIGPVALGGFL---- 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              + + ++P F R+S   GIKR++S+N++   +K+  K  ++  +  + L+ +   +L 
Sbjct: 117 --FSGSLLQPKFSRMSPLSGIKRMFSLNSVTELLKAVAKFFVILVVALVVLSHDRQALLA 174

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +      + HA   V    + +   +  +  +D+ +   Q   KLKM+KQE++DE K 
Sbjct: 175 IANEPLEQAIIHAVQVVGWSALWMAAGLLLIAAVDVPFQLWQTQQKLKMTKQEVRDEYKD 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAK 294
           S G P +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L+AK
Sbjct: 235 SEGKPEVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAK 294

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G + IA K+R+I  EH + I E P+LAR+++    I   IP   Y AVAQ++  ++ 
Sbjct: 295 GTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQ 351


>gi|330972452|gb|EGH72518.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 378

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 183/351 (52%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGS-DIALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KS  K +++  +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFVAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 350


>gi|296330853|ref|ZP_06873328.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674371|ref|YP_003866043.1| flagellar export machinery protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151858|gb|EFG92732.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412615|gb|ADM37734.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 360

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 196/350 (56%), Gaps = 11/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSPGIYS-VTSDLHVLL 66
            KTE  + KK +D   +G   +++ A + +++   +I+L L    P +   + S L    
Sbjct: 13  EKTEKATPKKRKDTRKKGQ--VAKSADVNTAVSLLVIFLSLIAIGPFMRDRLLSFLETFY 70

Query: 67  ASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +   KL + + H +F+   L    + ++ P +L+ ++ G+ S  +Q   + +   ++P
Sbjct: 71  TESLTMKLSEANVHTLFI--SLLKDTAFVLAPIMLVALVAGVVSNYMQVGFLFSAEVIQP 128

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +++   +G KRIYS+  +V  +KS +KI +VG      L  +Y  +L      P   L
Sbjct: 129 KLEKLDPIKGFKRIYSMRAIVELIKSILKITVVGFAAFAVLWLHYGEILRLPLLTPEEAL 188

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW-YSK-LKMSKQEIKDEIKQSYGNPIIK 243
             +F +   + + +    A L +  + + Y ++ Y K +KMSKQ+IKDE K+S G+PIIK
Sbjct: 189 --SFVSKLTLWMGLSGAGALLLLAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIK 246

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+
Sbjct: 247 SKIKQRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKI 306

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           RKIA EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 307 RKIAKEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|172059259|ref|YP_001806911.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria MC40-6]
 gi|171991776|gb|ACB62695.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MC40-6]
          Length = 399

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 179/357 (50%), Gaps = 29/357 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           ++TEA + ++ E A  EG    SRE + F+ + A         +P          G ++ 
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAMLRGAFAF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    +E ++ ++ +L    L+          L     +G +LI +
Sbjct: 68  DRATAFDTHRMLSAAGSASIEGLAALLPILALTGLA---------ALLAPMALGGWLISQ 118

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L
Sbjct: 119 ------KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    S +  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPFGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G NL+A ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y 
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQ 349


>gi|126665002|ref|ZP_01735985.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17]
 gi|126630372|gb|EBA00987.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17]
          Length = 377

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 186/356 (52%), Gaps = 11/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+++D+   KTE  + +++E A  +G    S+E +  + ++A    LL F       + +
Sbjct: 1   MADDDSSQEKTEEATPRRLEKAKEDGETARSKELATTAVLMAGAGGLLIFGTHLGAALEA 60

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-GSYLIQRIP 116
           +  D   L  SA    + D+ H+   L   + +A+  + P L++ ++  I GS  I  + 
Sbjct: 61  IMRDAFTLERSA----IFDMRHMSVQLIASTKAAAWALSPILVMLLVAAIAGSIGIGGL- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           + +   + P   R++  +GI R++S  +L+   K+  K+ LV TI  + L      +L  
Sbjct: 116 LFSGKSIAPKLNRMNPIKGIGRMFSARSLIELFKAIAKVGLVLTIAILILQVRTVDLLS- 174

Query: 177 ISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           ISA P    + H  +T+     ++      + V+D+ +  +  + KLKM+ QE+KDE K 
Sbjct: 175 ISAEPAVPAMEHVLWTLGWSFFLLSCATIIIAVIDVPFQIYDHHKKLKMTMQEVKDEHKD 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G P +K R + + R   + +MM+    A ++ITNPTHYA+AL+Y      AP++VAKG
Sbjct: 235 SEGKPEVKGRIRQLQREMSQRRMMQDVPTADVVITNPTHYAVALKYDPNSMAAPMVVAKG 294

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A K+ +IA E+ + I   P LAR+++    I   IP   Y A+AQ++  ++ 
Sbjct: 295 GDELAFKIMEIARENKVEILRTPPLARAVYHNSDIGQEIPDGLYMAIAQVLAYVFQ 350


>gi|237755398|ref|ZP_04584025.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692439|gb|EEP61420.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 350

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 189/359 (52%), Gaps = 33/359 (9%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI--------YSVTSD 61
           KTE  + K+ + A  EG    S + S+ +S+    I L+F+             Y+ ++ 
Sbjct: 7   KTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLVGYFKYTFSNP 66

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L+++  + +         I F L  L++    L +P +L+  + GI S +IQ   +  L 
Sbjct: 67  LYLIPDNGSM-------FIWFTLKILAI----LTLPVILILFIVGIASNVIQFGFLFTLK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT----MLDFI 177
            + P   ++++  GIKRI+S+  L   +K+  K+       T++L  +YF     + DF+
Sbjct: 116 PLTPKLDKLNVISGIKRIFSLTVLFELIKNLAKL-------TVALFLSYFLVKYLLNDFL 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFI---ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                SI    +   + ++I+++ F      + + D  +  +++   LKM+K E+K+E K
Sbjct: 169 VYMTGSINNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERK 228

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
              GNP++K   +   R     +M+    +A ++ITNP HYA+AL+Y + +  AP ++AK
Sbjct: 229 SYEGNPLVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVIAK 288

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           GQ+LIA+K++++A EH I I E+P LAR+L+    I   IP   Y+AVA+++ +IY  K
Sbjct: 289 GQDLIAQKIKEVAKEHGIKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKAK 347


>gi|221214213|ref|ZP_03587185.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1]
 gi|221165868|gb|EED98342.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1]
          Length = 399

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 178/359 (49%), Gaps = 29/359 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP----------GIYSV 58
           ++TEA + ++ E A  EG    SRE + F+ + A          P          G ++ 
Sbjct: 8   DRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQAMLRGAFAF 67

Query: 59  TS----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                 D H +L++A    +E ++ ++ +L     +A               +G +LI  
Sbjct: 68  DRATAFDTHRMLSAAGSASVEGLAALLPILALTGAAAL---------LAPMALGGWLI-- 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
               +    +  F R++   G+ RI+SI   +    S  K ++VG I  +++  +   +L
Sbjct: 117 ----SPKTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +    + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +
Sbjct: 173 GLATQPLDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G+P +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAK
Sbjct: 233 ENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G NL+A ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 293 GVNLVAARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351


>gi|284007183|emb|CBA72471.1| flagellar biosynthesis protein FlhB [Arsenophonus nasoniae]
          Length = 383

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 178/352 (50%), Gaps = 19/352 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+++K E A  EG    SRE S F  ++A +     F+  G +S    LH L + 
Sbjct: 8   EKNEEPTARKKEKAKEEGQVVRSRELSSFFMLIAGVS---LFWICG-HSCYQKLHALFSQ 63

Query: 69  A------TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNL 120
                       + + ++VF    + L+A   +I GL+L + F   S+   I     +N 
Sbjct: 64  TFYFDKYILYNSQLLPNLVFESVKIGLNALLPIIAGLVL-IAFAAPSFFGGIH----INF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  +K+++   G+KR++SIN L    K+ +K++LV   IT+ L  N       ++  
Sbjct: 119 KSIKFDWKKLNPITGLKRLFSINALAELFKALLKVMLVSIGITLFLWVNLPHFFHLVTEP 178

Query: 181 PHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            H  L  A    +    I I + I  L   D+ +       KL+M++QEIKDE KQ  G+
Sbjct: 179 RHLALSQATQLMIFAAYIAIFMLI-PLVGFDLIYQLRSHLKKLRMTRQEIKDEFKQQEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK R +   R   R +MM    +A +IITNPTHYA+AL+Y      AP ++ KG  LI
Sbjct: 238 PHIKARIRQQQREISRRRMMADVPKADVIITNPTHYAVALQYDNQAMQAPKVLVKGAGLI 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A  ++++  E+ IP+ E P LAR+L++   +   IP   Y AVA+++  +Y 
Sbjct: 298 ALNIKQLGEENRIPVLEAPPLARALYRHSKVGGHIPATLYAAVAEVLAWVYQ 349


>gi|290474957|ref|YP_003467841.1| putative part of export apparatus for flagellar proteins
           [Xenorhabdus bovienii SS-2004]
 gi|289174274|emb|CBJ81064.1| putative part of export apparatus for flagellar proteins
           [Xenorhabdus bovienii SS-2004]
          Length = 383

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 181/356 (50%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  +G    S+E    +SIL  +  +   +  G  S+T 
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKARKDGQIARSKE---LTSILMLVGGVSLLWMSG-NSITH 55

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +L +++          + +   ++  +  L   A   ++P  +  ++  + +  +    +
Sbjct: 56  ELSLMVFEGFNFDHNMVSNDKQMIQQVGRLLKQAVWALLPVFVGLVLVALSAPTLMGGLI 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +K    ++S   G+K+I+S+N L    K+ +K  LVG    + +  N+  ML+  
Sbjct: 116 FSSKSIKFDLAKLSPISGLKKIFSMNALAELFKAILKASLVGGGTALFIWLNWPAMLNLT 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +  P   L  A   +     ++L  +  +   D+ +       KL+M++QEIKDE K+  
Sbjct: 176 AQPPLMALSDAMMMLIFAGYIVLFMLIPMVAFDVLYQIRSHLKKLRMTRQEIKDEFKEQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG  
Sbjct: 236 GDPHVKARIRQQQRAAARKRMMSDVPKADVIVTNPTHYAVALQYDSKKMGAPKVLAKGAG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           LIA ++++I  E+ IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 296 LIALRIKEIGAENRIPLLEAPPLARALFRHAEVGGFIPATLYAAVAEVLAWVYQLK 351


>gi|89075526|ref|ZP_01161937.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
 gi|89048798|gb|EAR54369.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
          Length = 376

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 195/358 (54%), Gaps = 12/358 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  + +TE  + +++E A  +G  P SRE +  + +++  + L++F   G+    S
Sbjct: 1   MSDSDGQE-RTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLMWF-GEGLSKALS 58

Query: 61  DLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            + + + S T+  + D+  + V +L  +    + L +  + LF+   IG+  +  +   +
Sbjct: 59  HIMMAMFSLTRDDIFDLDRLFVIILDAIVYILAPLFLVLIFLFVAAFIGAAGVGGVR-FS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDF 176
                P   +++   GIKR++ + + V  +KS +K+ LVG+I   +  S  E++F + + 
Sbjct: 118 TQAAMPKLSKINPLSGIKRMFGLQSWVELIKSILKVGLVGSIACYLIFSNLEDFFQLSNE 177

Query: 177 I-SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +  AN     +HA   +   +++I   +  +  +D+ +    +  +LKM+KQEIKDE K 
Sbjct: 178 VFPAN----YFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKD 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G P +K R + + R   + +MM    +A ++ITNP H+++ALRY    + APV++AKG
Sbjct: 234 SEGKPEVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A K+R+IA +H+I I     LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 294 GDHLALKIREIANKHDIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351


>gi|299069778|emb|CBJ41057.1| flagellar export pore protein [Ralstonia solanacearum CMR15]
          Length = 387

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 185/365 (50%), Gaps = 31/365 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE  S++++E A  EG+ P SRE   F         LL   + G++ +  
Sbjct: 1   MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSF--------VLLATGAGGLWVMGE 51

Query: 61  DLHVLLASATQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQR 114
            +    AS   R LE    D +       ++      L  V+ GL+L ++    S L   
Sbjct: 52  SIVRTAASFLARCLEFHRYDYTRAQEQWHYVGAQFGPLATVLAGLVLMLVLAALSPLALT 111

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              ++   V P   R+    G+KR++S+  L+   +   K++L+G +        ++ +L
Sbjct: 112 RGAISFKPVTPDITRLLGMHGLKRMFSVQGLLELPRLLAKLVLLGGV-------GWWLIL 164

Query: 175 ----DFISANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSK 226
               DF+   P   L         V  +  L +A + +L    D+  +  Q+  K +M+K
Sbjct: 165 HYRDDFVEL-PRQDLIAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTK 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           +E++ E ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E 
Sbjct: 224 EEVRKEHRESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEG 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP ++AKG +++A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++
Sbjct: 284 GAPRVLAKGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVL 343

Query: 347 YKIYH 351
             +Y 
Sbjct: 344 AYVYQ 348


>gi|16799762|ref|NP_470030.1| flagellar biosynthesis protein FlhB [Listeria innocua Clip11262]
 gi|16413139|emb|CAC95919.1| lin0687 [Listeria innocua Clip11262]
          Length = 348

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIKAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F L        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLASMESYSLFYLMEFG----KVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|85711029|ref|ZP_01042089.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
 gi|85694942|gb|EAQ32880.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
          Length = 375

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 185/357 (51%), Gaps = 9/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    +TE P+ K+  +A  +G    S+E    + +L       F+F   +Y+   
Sbjct: 1   MAETD--QERTEEPTEKRKREAREKGQIARSKEMGT-AFVLVSAAVAFFWFGESLYAGVR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLN 119
            L   L +  +R+  D S I      L++    ++ P +++F    + ++L    +  +N
Sbjct: 58  GLFRDLFTLERRQAFDTSQI---YKALAVGFEHIIWPVIIIFAFITLFTFLGNSWLGGIN 114

Query: 120 LNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P F R++   G KR++    LV  +K   K  +V     + L+  +  +L   
Sbjct: 115 FSWKAMAPKFSRMNPMNGFKRMFGTQALVELVKGIAKFGVVAISAFLLLSWQFDNILQIS 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                S++ +A   +  + ++I   +  + V+D  +   +    L+M+KQEIKDE K S 
Sbjct: 175 MGQMPSMIENALDILMWMFLLICCSMFLIVVIDAPFQLWKHNKDLRMTKQEIKDEHKDSE 234

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + +       +MM+   +A +++TNPTH+A+A++Y ++ N AP+L+AKG +
Sbjct: 235 GSPEVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHFAVAIKYEESGNQAPILLAKGTD 294

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
             A K+R+IA E+++P+   P+LARS++    + + IP   + AVAQ++  +Y  K+
Sbjct: 295 ETAAKIREIALEYDVPLVASPALARSIYHTTELETEIPRGLFVAVAQVLAYVYQLKM 351


>gi|302392376|ref|YP_003828196.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM
           5501]
 gi|302204453|gb|ADL13131.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM
           5501]
          Length = 353

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 182/346 (52%), Gaps = 5/346 (1%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ K+ ++A  EG    S+E S+  ++L   I L F     +Y     ++    
Sbjct: 4   EEKTEDPTPKRRQEAREEGQVAQSQELSMAFTLLFSFIMLFFLMDNILYESMEFMNKYFT 63

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L ++     LL  L     RLV P + +  + G+   L+Q   +     ++P  
Sbjct: 64  DYMTMTL-NLQTFYTLLLELMQFIFRLVAPLMFVVALVGVVVGLLQTGFLFTPTSLQPDP 122

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++    G K+I+S   +  F KS +KI +VG I  +++ +N   ++ F     + ++  
Sbjct: 123 SKLDPVSGFKQIFSKQTVAEFFKSILKISIVGGIAYLTIKDNLPQLIMFSKMGLNQVVSL 182

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNR 245
               +  + I + L +  L +LD  + Y +W    +LKM+KQE+K+E KQ+ GNP IK R
Sbjct: 183 IGSIIYSLAIKVSLILILLGILD--FIYQKWEHEQQLKMTKQEVKEEKKQTEGNPEIKKR 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           QK   +    ++MME+   A ++ITNPTH A+A+++     DAP++VAKG+  IA K++K
Sbjct: 241 QKEKQQEMAMNRMMESVPEADVVITNPTHIAVAIKFDIDNMDAPIVVAKGKGEIAHKIKK 300

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            A E  I I EE  LAR+L+ QV I   IP   Y+AVA+++  +Y 
Sbjct: 301 KAEECGIEIVEEKPLARALYGQVEIEEEIPMELYQAVAEILAYVYQ 346


>gi|254522000|ref|ZP_05134055.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14]
 gi|219719591|gb|EED38116.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14]
          Length = 377

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 176/356 (49%), Gaps = 11/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57
           MSEN++   KTE P+ K++ DA  +GN P SRE   A++F +    L  +    S G  +
Sbjct: 2   MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGA--GVLAVMAMSGSIGRGA 59

Query: 58  VTSDLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
                H L    + R+   E   H   LL    L    ++ P +L+ ++    + L+   
Sbjct: 60  TAWMKHALSPEQSLRQNPKELFGHFGDLLLQFLL----VIAPLVLVCLLASFVAPLVMGG 115

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +   + P   R++   G+KR+Y    +  F KS +++  VG    + +   + T+  
Sbjct: 116 LRWSQKALLPDINRLNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRG 175

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            I     + +        ++L+     +  L  +D  +    W  KLKM+++E++ E+K+
Sbjct: 176 LIHHPLETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKE 235

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P +K R + + +     +MMEA   A +++ NPTHYA+AL+Y     +AP +VA G
Sbjct: 236 SEGSPEVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPTVVALG 295

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +  A ++R++A  + + I   P LAR+L+++  +   IP   Y AVAQ++  +Y 
Sbjct: 296 VDETALRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQ 351


>gi|307824492|ref|ZP_07654717.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum
           SV96]
 gi|307734476|gb|EFO05328.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum
           SV96]
          Length = 374

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 184/357 (51%), Gaps = 12/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL---FFFSPGIYS 57
           MS+ND   +KTE P+ K++ DA  +G  P SRE + F  ++A    LL        G+  
Sbjct: 1   MSDND---DKTEDPTGKRLADARKKGQIPRSRELNTFVILMASATMLLTQGGTIGNGLLK 57

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +      L  +A    + D   I   L    +    L+ P + + ++  I + +     V
Sbjct: 58  IMRTTFRLSRAA----IFDPDSITLYLKQAMIDTVMLLAPFMAVMVVVAIVTPISMGGWV 113

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDF 176
            +   +  +  +++   GI RI++I  LV   K+ +KI+LV   + ++L  ++   +L  
Sbjct: 114 FSWEAIAFNPSKMNPIAGIARIFAIRGLVELFKALLKILLV-FAVAVALYRSFIGELLSL 172

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              +P   + HA   +   ++++   +  + ++D+ +        +KMSKQEIKDE K +
Sbjct: 173 GGESPIHSIGHALDIIGTCILLLSSSLILVVMIDVPYQLWDHSKNMKMSKQEIKDENKDA 232

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K RQ+ +     + +MME   +A +I+TNP+HYA+AL+Y Q  N AP LVAKG 
Sbjct: 233 EGSPEVKGRQRRMQMETAQRRMMEEVPKADVIVTNPSHYAVALKYDQNSNSAPKLVAKGV 292

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +LIA ++R  A    +P+   P LAR+L+    ++  IP   Y AVAQ++  +Y  K
Sbjct: 293 DLIAAQIRNAAIGSGVPLVASPPLARALYYSTELDREIPQGLYLAVAQILAYVYQLK 349


>gi|238924151|ref|YP_002937667.1| flagellar biosynthesis/type III secretory pathway protein
           [Eubacterium rectale ATCC 33656]
 gi|238875826|gb|ACR75533.1| flagellar biosynthesis/type III secretory pathway protein
           [Eubacterium rectale ATCC 33656]
 gi|291524884|emb|CBK90471.1| flagellar biosynthetic protein FlhB [Eubacterium rectale DSM 17629]
          Length = 382

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 194/378 (51%), Gaps = 49/378 (12%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLF--FFSPGIYSV 58
           +++     KTE  + KK++DA  EG    S+E  + F  I+  L+  +F  F    +  +
Sbjct: 25  AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84

Query: 59  TSDLHVLLASATQRKLEDISHIV-----------FLLTHLSLSASRLVIPGLLLFMMFGI 107
            S ++  +    +   E IS +            FLLT L   A  +VI  L+  +  G 
Sbjct: 85  FSTVYKKMPDFLKESQEQISSVSVTHYLNNVILQFLLTVLPFFAFGVVITILVSIIQVG- 143

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
             + I   P+       P   + +   G KRI S +++   +KS +K   VG I+ ++ +
Sbjct: 144 --FKISTKPM------APKLSKFNPINGFKRILSKDSIFELLKSVLK---VGIIMYVAYS 192

Query: 168 ENYFTMLDFISANPHS----ILY-----HAFFTVRKVLIMILLFIATL----TVLDIGWS 214
                     S   H     ILY      A   +  ++I   L I+ +     + D  ++
Sbjct: 193 ----------SVKSHQNDIFILYELPLKQAIVLIGDIIINTGLKISIVYMIVGIADFAYN 242

Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274
            H++ + +KM+KQE+KDE K + G+P IK +Q+   +   + +MM+   +A ++ITNPTH
Sbjct: 243 KHKFNNDMKMTKQEVKDEFKNTEGDPAIKGQQRKRMQEASQRRMMQDVPKADVVITNPTH 302

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +A+A++Y   +NDAPV+VAKGQ+ +A+K+++IA ++NI I E   LAR LF  V + + I
Sbjct: 303 FAVAVKYDAQKNDAPVVVAKGQDYVAQKIKEIARDNNIHIVENKPLARMLFHNVDLGAEI 362

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y++VA+++  IY +
Sbjct: 363 PPELYRSVAEILAMIYKE 380


>gi|313624921|gb|EFR94829.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL J1-023]
          Length = 348

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F L        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLASMESYSLFYLMEFG----KVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 SQIFALFKNEFLALFLVIAIIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|119476304|ref|ZP_01616655.1| Flagellar biosynthesis pathway, component FlhB [marine gamma
           proteobacterium HTCC2143]
 gi|119450168|gb|EAW31403.1| Flagellar biosynthesis pathway, component FlhB [marine gamma
           proteobacterium HTCC2143]
          Length = 386

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 177/365 (48%), Gaps = 29/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END    KTE  + K++E +  EG    S+E      +LA +  L+ +          
Sbjct: 1   MAENDNGQEKTEEATPKRLEKSREEGQVARSKELGTALILLAGVGGLIVY--------GG 52

Query: 61  DLHVLLASATQRKLEDISHIVF----LLTHLSLSASRLVIPGLLLFMMF----------G 106
           D    L    +        + F    +L HL  + S  +I  +L F              
Sbjct: 53  DFGQALMGVMRFNFSMPRDVAFDESLMLRHLG-NTSIFIIETMLPFFALIAVAAVVGPVA 111

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           +G +      +L+   + P   R+   +GIKRI+S+ +LV  +KS  K+++VG++   +L
Sbjct: 112 LGGF------ILSGKALVPKLTRLDPIKGIKRIFSLTSLVELLKSICKVLVVGSMAYFTL 165

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
                 +LD   A     +      V   ++ +   +  + ++D+ +       KLKM+ 
Sbjct: 166 RNAEMDLLDLAHAELQPAIVQMLTIVAWSVLAVSASMILIVLIDVPFQIFDHSKKLKMTL 225

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE+K S G P +K R + + R   + +MMEA   A ++ITNP H+++AL+Y     
Sbjct: 226 QEVKDEMKDSEGKPEVKGRIRQLQREMAQRRMMEAVPEADVVITNPEHFSIALKYDVEGG 285

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP+LVAKG + +A K+R+IA  +++ I   P LAR+++    I+  IP   Y AVAQ++
Sbjct: 286 GAPILVAKGVDFLAIKIREIANANDVMILAAPPLARAIYFTTEIDDEIPNTLYLAVAQVL 345

Query: 347 YKIYH 351
             ++ 
Sbjct: 346 AYVFQ 350


>gi|319649548|ref|ZP_08003704.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2]
 gi|317398710|gb|EFV79392.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2]
          Length = 361

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 154/261 (59%), Gaps = 8/261 (3%)

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           P +L+ M+ GI +  +Q   + +   ++P  +++   +G KRI+S+  +V  +KS +KI 
Sbjct: 102 PIMLVAMLAGITANFMQVGTLFSTEAIQPKLEKMDPIKGFKRIFSMRAIVELLKSMLKIA 161

Query: 157 LVG--TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM--ILLFIATLTVLDIG 212
            VG      + L  +   +L   S    ++   A  TV+  LI    LLF   L+VLD  
Sbjct: 162 FVGVAAFAVLWLRIDEILILSQKSVGT-AMATLASLTVQMGLIASAALLF---LSVLDYL 217

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272
           +  + +   ++MSKQ+IKDE K   G+P+IK++ K   R     +MM+   +A ++ITNP
Sbjct: 218 YQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKIKQRQREMAMRRMMQEVPKADVVITNP 277

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH+A+AL Y +T++DAP++VAKG + +A+K++ IA EH++   E   LAR+L+ Q  I  
Sbjct: 278 THFAIALSYDETKSDAPIVVAKGVDFVAQKIKLIAKEHDVIAVENRPLARALYSQAEIGQ 337

Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
           AIP  F+KAVA+++  +Y  K
Sbjct: 338 AIPEEFFKAVAEILAYVYRTK 358


>gi|309778952|ref|ZP_07673722.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA]
 gi|308922299|gb|EFP67926.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA]
          Length = 387

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 180/367 (49%), Gaps = 50/367 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S +++E A  EG+ P SRE + F+         L   S G   V  D  V  AS
Sbjct: 8   EKTEPASPRRLEQAREEGDVPRSRELASFA---------LTAVSAGGLWVMGDSIVRAAS 58

Query: 69  A-TQRKLE-----------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           A   R LE             +++      L+++     + GL+L ++    S L     
Sbjct: 59  AFLARCLEFHRYNYTSGQDQWNYVTGQFMPLAMA-----LGGLMLMLVIAALSPLALTRG 113

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV------------GTIITI 164
            ++   + P   R+   +G+ R++S+  L+   +  +K+ L+            G +I +
Sbjct: 114 AISFKPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIEL 173

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
              +    M D +      +   AF  +  V++++         +D+  S  Q+  K +M
Sbjct: 174 PQQDLGVAMRDTLH-----VAGVAFLCMAAVMMLV-------AAVDVPLSLWQYARKHRM 221

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +K+E++ E ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + 
Sbjct: 222 TKEEVRKEHRESEGDPHVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEK 281

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E  AP ++AKG +++A K+R++  EH IPI E P LAR+L++   I   IP   Y AVA+
Sbjct: 282 EGGAPRVLAKGADMVAAKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAE 341

Query: 345 LIYKIYH 351
           ++  +Y 
Sbjct: 342 VLAYVYQ 348


>gi|304312007|ref|YP_003811605.1| Translocation protein in type III secretion [gamma proteobacterium
           HdN1]
 gi|301797740|emb|CBL45962.1| Translocation protein in type III secretion [gamma proteobacterium
           HdN1]
          Length = 358

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 186/342 (54%), Gaps = 9/342 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSIL-ACLIYLLFFFSPGIYSVTSDLHVLLA 67
           ++TE P+ K+IEDA  +GN  +SR   L  ++L    I LL    P ++     +H +  
Sbjct: 7   DQTELPTPKRIEDARRDGN--VSRSQDLGKTLLIPVWIGLLGGLLPVLFQRW--IHYVRT 62

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKP 125
           +      ++++ +  L   +S +   L I   L+F    IG ++  +Q   VL L  VKP
Sbjct: 63  TWQNLPPDNLNGL--LDAMMSGAGVFLAILLPLIFFAAAIGVFIEFVQVGKVLALKPVKP 120

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++   G+KR++S  N V   KS  K  L+  +  I L +     L     +  ++ 
Sbjct: 121 DLNRLNPAAGLKRMFSQRNFVELAKSVGKSSLIILLSMIVLRDQLGDTLKLPYGSHETLF 180

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              + T+R +LI + +    +  +D+ +  + W   L MS+++I+ E K S G+P++K +
Sbjct: 181 AVLWLTLRAMLISVTIAFLLIAAMDVAYQKYAWTKDLMMSRRDIQQEHKNSEGDPMLKGQ 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++++ +   +   M +   A++++TNPTHYA+A+ Y + + D P++VAKG++  A+ +R+
Sbjct: 241 RRALHQEWSQENAMGSVRGASVVVTNPTHYAVAIHYEKGKTDLPLVVAKGEDYFARMIRE 300

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            A E  +PI E   LAR+L++ + +++ I   F++AVAQL++
Sbjct: 301 AAQEAGVPIMENVDLARALYRDIDVHNPITSEFFEAVAQLLH 342


>gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum D str. 1873]
 gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum D str. 1873]
          Length = 610

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 10/354 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G  P S+E +    +L   I LL        S   D+   
Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVPKSKEVNSAIILLTSTIILLTLGEYVANSFKKDIIEF 320

Query: 66  LASATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
             +    +L     IS IV +L    +    +V+P     M+ GIG+ L+Q   + +   
Sbjct: 321 FTNYLNIELNSSSLISIIVTVLWRFMIVFLPVVVP----LMIMGIGANLLQTGYINSKEP 376

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP   +++   G K+++S+  ++  +K    I ++G      L  N+  +L   +    
Sbjct: 377 LKPQLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFAGYGFLKSNFKKVLSMTNLRFP 436

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I+         +   + L +  + + D  +   Q+   ++MSKQE+K+E KQ  G+P I
Sbjct: 437 VIITSFLKLTTNIFFRVSLIMFAIALTDFIYQKFQFKKDMRMSKQEVKEEFKQMEGDPQI 496

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + K   R     +MM+    A+++ITNPTH A+AL+Y   +++AP+LVAKG + IA K
Sbjct: 497 KGKIKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGQDNAPMLVAKGSDYIAIK 556

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHKK 353
           +++IA E+++PI E   LAR +FK+V I + IP   Y+AVA+   L+YK+  +K
Sbjct: 557 IKQIAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLKRRK 610


>gi|297569688|ref|YP_003691032.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925603|gb|ADH86413.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 353

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 181/351 (51%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +   KTE P+ +++ +A  +G+   S E    + +LA +I L F        VT 
Sbjct: 1   MAEEQSGQEKTEKPTERRLLEARKKGDVAKSMEVPSAAVLLAGVIVLYFTGERMFNQVTG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +     L    ++  +     +S   ++ P +L   +  + +  +Q   +   
Sbjct: 61  MMQFYLGNLDTLNLSP-GNMPAISRQALISIFDVLWPLMLTVFIVALLANYMQIGVLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  +++   +G  R++S   L NF KS  K+ +VG +    +      +L  +   
Sbjct: 120 EKMKPKLEKIDPLKGFGRLFSKQALANFFKSMAKMGVVGYVAYSEVKRALNEILPLMDKA 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P+ I+     T   + +   L IA +  +D  +   Q+  K+KM+KQ++KDE KQ+ G+P
Sbjct: 180 PYPIVMFMTETAFWIFLKCALAIAIIAAIDYAFQRWQFMEKMKMTKQDMKDEGKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R ++I     R +MM    +A +++TNPT  A+A++Y      AP ++AKG  ++A
Sbjct: 240 HVKGRIRAIQTEMARKRMMAEVPKADVVVTNPTRLAIAIKYDALTMPAPKVLAKGAGVVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+IA EH +PI E+  LA++L++ V I+  IP   ++AVA+++  +Y+
Sbjct: 300 GKIREIAQEHEVPIVEDKPLAQALYQTVEIDQTIPENLFQAVAEVLAYVYN 350


>gi|89895721|ref|YP_519208.1| hypothetical protein DSY2975 [Desulfitobacterium hafniense Y51]
 gi|89335169|dbj|BAE84764.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 354

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 181/356 (50%), Gaps = 22/356 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDL----H 63
            KT   + ++ ++A  +G   + +   + S++ L   I LL F+ P +    S +    +
Sbjct: 7   EKTFQATPRRRQEARKKGQ--VFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQIFPYVY 64

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L A  T R       +  L+  L     ++V P  ++  +   G+  +Q   +  L  +
Sbjct: 65  GLSAEWTAR------SVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTLEPL 118

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANP 181
           KP   R+S+  G KR++ +   V  +KS +K+  +G  +  ++ +N+  F ++  ++   
Sbjct: 119 KPQLSRISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLTVGQ 178

Query: 182 HSILYHAFFTVRKVLIMILLF-IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            ++            I +  F IA +  L   W Y +    LKMS +E+K E KQ+ GNP
Sbjct: 179 GAMFIGGLIVELGWKIALSFFVIAAIDFLYQWWDYEK---NLKMSHEELKQEYKQTEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   K   R+    +MM+    A +++TNPTHYA+ALRY   EN APV+VAKG + IA
Sbjct: 236 QLKGEIKRKQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKK 353
           ++++++A ++ I   E   LAR+LF Q  I  A+P   YKAVA++   +Y++  KK
Sbjct: 296 QRIKQLAKDYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLKRKK 351


>gi|148266206|ref|YP_001232912.1| flagellar biosynthesis protein FlhB [Geobacter uraniireducens Rf4]
 gi|146399706|gb|ABQ28339.1| flagellar biosynthetic protein FlhB [Geobacter uraniireducens Rf4]
          Length = 354

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 201/363 (55%), Gaps = 22/363 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE----ASLFSSILACLIYLLFFFSPGIY 56
           MSE D   +KTE P+ K+I DA  +GN P SR+     +L + I+A  +   F FS    
Sbjct: 1   MSEQD-KHSKTEQPTGKRISDAKEKGNIPRSRDLTSTVTLMAGIIALYVTGGFMFS---- 55

Query: 57  SVTSDLHVLLAS-ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           ++      LLA  ATQ   +  + +  L+  L  + + ++ P LL+ ++ G+ + + Q  
Sbjct: 56  TLKGSAKELLAGIATQDMTQ--AGVYTLMLKLLFTTTLVLAPFLLVVVVAGLVAEISQGG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172
              +   +   F++++  +G+KR+++ +  V  +KSF+KI++VG +   +      N   
Sbjct: 114 ISTSFEKIGFDFEKLNPVQGVKRLFNKDAAVQVLKSFLKIVIVGYMAYRVMRDEVNNLIY 173

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           ++D         + H  F   K+++     +  L+VLD+ +   ++   LKM+KQE+KDE
Sbjct: 174 LVDMDIGGITEFIGHISF---KIVLHTCGALFILSVLDLIFVKWRFIENLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNR--QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            K S G+P IK +  QK   ++R R +++  T  A +++TNPTH+A+AL+Y + +  APV
Sbjct: 231 NKDSEGDPHIKGKIKQKQFEQARRRMRLIIPT--ADVVVTNPTHFAVALKYDRQKMAAPV 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++AKG + +A+++++IA E NI + E   LAR L+ QV     IP   Y AVA+++  +Y
Sbjct: 289 VLAKGADFLAQRIKEIARESNITLVENRFLARELYAQVKEGEEIPEALYAAVAEILAYVY 348

Query: 351 HKK 353
             K
Sbjct: 349 SLK 351


>gi|289208350|ref|YP_003460416.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix]
 gi|288943981|gb|ADC71680.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix]
          Length = 383

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 185/368 (50%), Gaps = 31/368 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN++   KTE P+ K++ +A  +G  P SRE S F  ++A   ++ FF          
Sbjct: 1   MAENESGQEKTEQPTPKRLREAKEKGQVPRSRELSTFLVLMAAGGFMTFF--------GP 52

Query: 61  DLHVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L   LA  T  + +       D S ++  L+       R ++P   + M+  + + ++ 
Sbjct: 53  TLGGQLAEQTAGRFDIERDLAYDSSLLLPYLSEQIFMTLRTLLPLFGVLMVAAVLAPILI 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
                +    KP   +++  +G+KRI+S   L+ F K+F K +LV  +  +S+   +   
Sbjct: 113 GGANFSWQAAKPKASKLNPLKGLKRIFSWQGLMEFGKTFAKFVLVAGV-AMSVLWTFSDR 171

Query: 174 LDFISANP-HSILYHA-------FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           L  +   P    + HA       F  V   LI++    A   +    W++ +   +L+M+
Sbjct: 172 LLMLGYEPLEQAITHAAQLALGTFVAVSAALILVAAIDAPFQM----WNHQK---QLRMT 224

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           +QE+KDE K++ G P +K + + + +   + +MME   +A ++ITNPTHYA+A+ Y  + 
Sbjct: 225 RQELKDEYKETDGKPEVKQKIRQLQQEMAQRRMMEEVPKADVVITNPTHYAVAITYEASR 284

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP LVAKG + +A  +R +A EH I   E P +AR+++    +N  IP   + AVA++
Sbjct: 285 MAAPKLVAKGVDEVAASIRAVADEHKIIRVEAPRVARAIYFTTDLNQEIPNGLFVAVARI 344

Query: 346 IYKIYHKK 353
           +  +Y  K
Sbjct: 345 LAYVYQLK 352


>gi|325920558|ref|ZP_08182480.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC
           19865]
 gi|325548951|gb|EGD19883.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC
           19865]
          Length = 376

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 180/351 (51%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    S
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFGLMALARGIGDGAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   ++ +++    +   ++  
Sbjct: 120 KAIMPDLNKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASLCISKGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++  +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREVCEQHRVSIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|30250406|ref|NP_842476.1| flagellar biosynthesis protein FlhB [Nitrosomonas europaea ATCC
           19718]
 gi|30181201|emb|CAD86399.1| FlhB HrpN YscU SpaS Family [Nitrosomonas europaea ATCC 19718]
          Length = 376

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 184/365 (50%), Gaps = 32/365 (8%)

Query: 6   APDN---KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
           A DN   +TE  S +++E A  EG    S+E + F+ ++A    L    S  I  +++ L
Sbjct: 2   ADDNDLERTEPASPRRLEKAREEGQVARSQELTTFTLLIAASSSLWVIGSIIIQKLSAVL 61

Query: 63  H--------------VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108
                          +LL    Q  L+ +  I  LL  L + A  LV P LL   +F   
Sbjct: 62  ESGLRMEQEVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIIA--LVAPMLLSGWLFSSK 119

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
           +               P  KR++   G+KRI+S   L+  +K+  K++++G +    +  
Sbjct: 120 ALF-------------PDLKRLNPVNGLKRIFSSRGLIELVKAIAKVMVIGGVAAGIIWS 166

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           +   +LD +     + L      +    ++I+  +  + V+D+ +       +L+MS+++
Sbjct: 167 HKQDVLDLVGMPLDTSLISMSRLIGLTFMLIVGAMLLIVVIDVPFQIWNHARQLRMSRED 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           ++ E K+  G+P +K R +++ R   R +MM    +A +++TNPTHYA+AL+Y      A
Sbjct: 227 LRKEAKEDEGDPQVKGRIRNMQRQIARRRMMAEVPKADVVVTNPTHYAVALKYQDRSMRA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P +VAKG  LIA ++R++A EH+IP+ E P LAR+L+  V +++ IP   Y AVA ++  
Sbjct: 287 PKVVAKGTQLIAARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAY 346

Query: 349 IYHKK 353
           I+  K
Sbjct: 347 IFQLK 351


>gi|219670145|ref|YP_002460580.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense
           DCB-2]
 gi|219540405|gb|ACL22144.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense
           DCB-2]
          Length = 350

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 179/353 (50%), Gaps = 19/353 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDL----H 63
            KT   + ++ ++A  +G   + +   + S++ L   I LL F+ P +    S +    +
Sbjct: 3   EKTFQATPRRRQEARKKGQ--VFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQIFPYVY 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L A  T R       +  L+  L     ++V P  ++  +   G+  +Q   +  L  +
Sbjct: 61  GLSAEWTAR------SVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTLEPL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANP 181
           KP   R+S+  G KR++ +   V  +KS +K+  +G  +  ++ +N+  F ++  ++   
Sbjct: 115 KPQLSRISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLTVGQ 174

Query: 182 HSILYHAFFTVRKVLIMILLF-IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            ++            I +  F IA +  L   W Y +    LKMS +E+K E KQ+ GNP
Sbjct: 175 GAMFIGGLIVELGWKIALSFFVIAAIDFLYQWWDYEK---NLKMSHEELKQEYKQTEGNP 231

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   K   R+    +MM+    A +++TNPTHYA+ALRY   EN APV+VAKG + IA
Sbjct: 232 QLKGEIKRKQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIA 291

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++++A ++ I   E   LAR+LF Q  I  A+P   YKAVA+++  +Y  K
Sbjct: 292 QRIKQLAKDYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 344


>gi|298528402|ref|ZP_07015806.1| type III secretion exporter [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512054|gb|EFI35956.1| type III secretion exporter [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 359

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 190/355 (53%), Gaps = 12/355 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI---YS 57
           M + D   +KTE  + K+ + A  +GN P S+E     S++A ++ L  FF P I   Y 
Sbjct: 1   MPQKDP--SKTEDATPKRRKKAREQGNVPKSQEMPKIISLIAGILALRLFF-PHIRDTYM 57

Query: 58  VTSDLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
             ++  +  A   Q   E + H+ VF + +++     +++P +L+     I +  +Q   
Sbjct: 58  EMTEWFMDQAFHYQLNPESLYHLAVFSIQNIA----SMLLPFMLIVFFVTIVAIYLQVGF 113

Query: 117 VLNLNHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           +     +KP  K  ++ EG+K+ +  +N LV  +K+      V T   I +T  +   L 
Sbjct: 114 LWTFKPLKPKMKIFNVVEGLKKKFLDLNTLVRLVKNVGIASAVATAPYIIITSEFENFLP 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
               +P  I+ +   T  K+ ++ ++ +  + + D+ ++   +   LKM+K E+KDE KQ
Sbjct: 174 LFYEDPPFIVAYILNTAFKMAMLAMIPLLIIAIADVAYTRWDYEQNLKMTKDEVKDERKQ 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + GNP +K  Q+   +S  + +M +   +A ++ITNPTH A+A++Y      AP+++AKG
Sbjct: 234 AEGNPEVKKEQRKKMQSTTQQRMRQEVPKADVVITNPTHLAVAIKYDPVLAPAPMVLAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            N  A+K+++IA E+NIPI E   LA++L+K V     IP   YKAVA ++ ++Y
Sbjct: 294 ANFRAEKIKEIARENNIPIRENKPLAQALYKNVQEGETIPEDMYKAVASILAQLY 348


>gi|114566403|ref|YP_753557.1| flagellar biosynthesis/type III secretory pathway protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337338|gb|ABI68186.1| flagellar biosynthesis/type III secretory pathway protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 369

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 184/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    KTE  + ++ E+A  +G    S + +    ++A  +     F   + ++ S   
Sbjct: 17  DDGMGEKTEKATPRRREEARKKGQVFKSTDLNSAIILIAGSVASFMAFPYMVNNLKSFTT 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           + L   TQ+   +  +I F+L  + +   +++ P  L   +  +    +Q   V +   +
Sbjct: 77  LYLLQRTQQDFSN-DYIYFMLLEVLIIMGKMIFPIFLTTFIVALLITYLQVGFVFSGESL 135

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P  +R++  EG KRI+S   LV   KS +K+I+ G I+   + ++Y     FI     +
Sbjct: 136 TPKLERLNPVEGFKRIFSKRALVELGKSLLKVIVTGYIVYSVMRKHYILFPRFIDMELIA 195

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L      V ++ + + L    + + D  + +++    LKMSK EIK E KQ+ G+P +K
Sbjct: 196 GLQVLSSIVFEMAMKVGLVFIIIGIADYIFQWYEHEKSLKMSKYEIKQEYKQTEGDPQLK 255

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+ I R     +MM    +A ++ITNPTH+A+ L+Y  ++ +APV+VA+G++ +A K+
Sbjct: 256 SRQRRIQRDIAMQRMMAEVPKADVVITNPTHFAVVLKYEASKMEAPVVVARGKDFMALKI 315

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++IA  H + I E P LAR+L+    I   +P   Y+AVA+++  +Y +K
Sbjct: 316 KEIARMHGVVIVENPVLARTLYYNTEIGDLVPEELYQAVAEVLAFVYKQK 365


>gi|322382375|ref|ZP_08056282.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153728|gb|EFX46103.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 378

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 142/232 (61%), Gaps = 2/232 (0%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  F +++  EG KRI+S+  +++F+KS +K+I++  I+ +++      ++        
Sbjct: 144 LKMKFNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQ 203

Query: 183 SIL-YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            +L Y    TV+  L +  + IA +  LD  +   ++   L+MSKQEIKDE K+S G+P+
Sbjct: 204 DMLPYIGSLTVQLGLKIGGVLIA-IAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPL 262

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK + +   R     +MM+   +A +IITNPTH+A+ALRY   E +AP ++AKG +LIA 
Sbjct: 263 IKGKIRERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIAL 322

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K++++A E+ + I E   LAR+L+ QV I  AIP   ++AVA+++  +Y  K
Sbjct: 323 KIKEVAKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 374


>gi|206603139|gb|EDZ39619.1| flagellar biosynthesis protein, FlhB [Leptospirillum sp. Group II
           '5-way CG']
          Length = 362

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 1/348 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D  + K E P+++K+E A  EG    SRE      +LA L+         +  + + +  
Sbjct: 3   DEFEQKQEEPTARKLEKAREEGQVARSREVGSLFFLLAALLLFGSVGHTVVVGLENQMEQ 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
               A   +L   S I   L  +  +  +   P    F+   I ++L Q  PV ++  + 
Sbjct: 63  GFVEAPSIRLTPDS-IGPYLGKILWNTLKTGFPLWGGFLAASILAFLFQGPPVWSVKALV 121

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P ++RVS  +G+ R++S  +L+   K  VK++LV  ++  SL  ++  +    +A  H  
Sbjct: 122 PKWERVSPVKGMGRLFSGRSLIELAKYLVKVLLVMFVVLWSLRGDWERLPALQAAGVHRF 181

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                  +R  L  ++     + +LD      Q    L+M++ EI++E K++ G+P +++
Sbjct: 182 FGALTGFLRDALYRLIPLFVVIAILDFLLQRIQLNRSLRMTRSEIREEFKETEGDPHVRS 241

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R +SI R+  R +MM     AT+++TNPTH+A+A+RY      APV+VAKGQ+ +A  +R
Sbjct: 242 RIRSIQRAMARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVALNIR 301

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           KIA E  +P+ E P LAR+L+   P++  IP  FY+AVA+++  +Y +
Sbjct: 302 KIAREARVPVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 349


>gi|190574224|ref|YP_001972069.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia
           K279a]
 gi|190012146|emb|CAQ45769.1| putative flagellar biosynthetic protein FlhB [Stenotrophomonas
           maltophilia K279a]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 173/354 (48%), Gaps = 7/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57
           MSEN++   KTE P+ K++ DA  +GN P SRE   A++F + +  ++ +      G  +
Sbjct: 1   MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
                        Q   E   H   LL    L    ++ P +L+ ++    + L+     
Sbjct: 61  WMKHALSPEQGLRQNPKELFGHFGDLLLQFML----VIAPLVLVCLLASFVAPLVMGGLR 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P   R++   G+KR+Y    +  F KS +++  VG    + +   + T+   I
Sbjct: 117 WSQKALLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLI 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                + +        ++L+     +  L  +D  +    W  KLKM+++E++ E+K+S 
Sbjct: 177 HHPLETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + + +     +MMEA   A +++ NPTHYA+AL+Y     +AP +VA G +
Sbjct: 237 GSPEVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGTMNAPTVVALGVD 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A ++R++A  + + I   P LAR+L+++  +   IP   Y AVAQ++  +Y 
Sbjct: 297 ETALRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQ 350


>gi|325981881|ref|YP_004294283.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212]
 gi|325531400|gb|ADZ26121.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212]
          Length = 379

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 188/367 (51%), Gaps = 35/367 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   +TE  + +++E A  EG    S+E + F+ ++A  + +L            
Sbjct: 1   MSE-ESDLERTEEATPRRLEKAREEGQVVRSQELTSFTLLMAAAVGIL------------ 47

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY---------L 111
               +L SA   KL  I      L       S L+I     F + G+ S          +
Sbjct: 48  ----MLGSALMEKLVKIMQSGMQLDRELAFQSELMINRFYEFAIEGLISMAPLLFLLLVV 103

Query: 112 IQRIPVL------NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
               P+L      +   V P FKR+   +G  RI+S+ +L+  +K+ +K IL+G +  + 
Sbjct: 104 AFFAPMLLSGWLVSAKAVIPDFKRIDPIKGFGRIFSMRSLIELVKAILKTILIGGVAALV 163

Query: 166 LTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           +  N  +++  ++ +    I     F     L++I   I  + V D+ +   +   +L+M
Sbjct: 164 IWHNKDSVMALLTVSIDLGISRTGDFLAMSFLLIISAMIIIVAV-DVPFQIWEHAKQLRM 222

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +K++++ E K+S G+P +K R +++ R   R +MM    +A +I+TNPTHYA+ALRY Q+
Sbjct: 223 TKEDVRKEYKESEGDPYVKARIRNLQREAARRRMMSEIPKADVIVTNPTHYAVALRY-QS 281

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
              AP +VAKG +L+A ++R+IA EH IPI E P LAR+L+    + S IP   Y AVA+
Sbjct: 282 NMRAPKVVAKGVHLLAARIREIATEHRIPILEAPPLARALYHHTELESEIPEKLYTAVAE 341

Query: 345 LIYKIYH 351
           ++  ++ 
Sbjct: 342 VLAYVFQ 348


>gi|319790410|ref|YP_004152043.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans
           HB-1]
 gi|317114912|gb|ADU97402.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans
           HB-1]
          Length = 347

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 189/355 (53%), Gaps = 26/355 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASL-FSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           +KTE  + ++ + A  EG    S++ S+ FS +L  +   LFF+ P  ++    L +   
Sbjct: 6   SKTEKATPRRRQKAREEGQVLRSQDLSIAFSLVLVAVT--LFFYLP--FAFRELLKLFNY 61

Query: 68  SATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +  +    +++  VF+ L  L+L    L  P  L+ ++ G+ S ++Q   +  L  + P 
Sbjct: 62  TFEELPFLELNQFVFVSLEILAL----LTFPVFLVLLVGGVLSNVVQFGFLFTLKPLVPK 117

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI--ITISLTENYFTMLDFISANPHSI 184
              ++  +G +R++S+  L   +KS VK+     +    +     YFT     S     +
Sbjct: 118 LDPINPVKGFQRLFSLKTLFELVKSLVKLGFASAVGYFAVKYLTRYFT-----SYASFPL 172

Query: 185 LYHAFFTVRKVLIMILLF------IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               ++  + ++++++ F      +A L  L   W Y +    LKMSKQE+K+E KQ  G
Sbjct: 173 EVQLYYLAKSLVVLVVAFALLAVPVAGLDFLYRRWEYEE---NLKMSKQEVKEERKQYEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK+  +   R     +MM    +A ++ITNP HYA+AL+Y + +  AP +VAKG + 
Sbjct: 230 HPLIKSEIRKRQRQLAMRRMMAEVPKADVVITNPEHYAVALKYERGKMYAPKVVAKGVDS 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+++IA EH +P+ E P LAR+L++   +   IP  FY+AVA+++ KIY ++
Sbjct: 290 VALKIKEIALEHGVPVEENPPLARALYESCEVGDFIPEEFYRAVARILAKIYRRR 344


>gi|167464149|ref|ZP_02329238.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 363

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 142/232 (61%), Gaps = 2/232 (0%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  F +++  EG KRI+S+  +++F+KS +K+I++  I+ +++      ++        
Sbjct: 129 LKMKFNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQ 188

Query: 183 SIL-YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            +L Y    TV+  L +  + IA +  LD  +   ++   L+MSKQEIKDE K+S G+P+
Sbjct: 189 DMLPYIGSLTVQLGLKIGGVLIA-IAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPL 247

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK + +   R     +MM+   +A +IITNPTH+A+ALRY   E +AP ++AKG +LIA 
Sbjct: 248 IKGKIRERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIAL 307

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K++++A E+ + I E   LAR+L+ QV I  AIP   ++AVA+++  +Y  K
Sbjct: 308 KIKEVAKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 359


>gi|224419239|ref|ZP_03657245.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
           98-5491]
 gi|253826957|ref|ZP_04869842.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142741|ref|ZP_07804934.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
           98-5491]
 gi|253510363|gb|EES89022.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131772|gb|EFR49389.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
           98-5491]
          Length = 357

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 188/359 (52%), Gaps = 32/359 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA--CLIYLLF-FFSPGIYSVTSDLHV 64
           + KTEAPS++KIE A  EGN   S + + F  ++    LI+L F F+  G+ ++  +++ 
Sbjct: 5   EEKTEAPSARKIEKAREEGNVIKSPDVNAFLGLVVGLVLIFLCFNFWVDGLSAIFFEVYH 64

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +      R     S+ + L   L      L+ P     M+ GI + + Q   +L    ++
Sbjct: 65  IFNQDLTR-----SNAISLTISLVFKILYLLAPIFGALMLIGIVANISQSGFLLTTKAIQ 119

Query: 125 PSFKRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           P  ++++   G+K I S+  L++ F+ +F   +L   II       +F  L F+      
Sbjct: 120 PKLQKLNFISGLKNIISLKKLLDGFLITFK--VLTAFIIA------FFVFLGFM----KE 167

Query: 184 ILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +   + F +   +I +           L F   + + D     +Q++  L+MSKQE+KDE
Sbjct: 168 LTTVSLFPIGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDE 227

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K   G+  +K + +S+     + +MM+    A +++TNPTHYA+ALRY  T+  AP ++
Sbjct: 228 FKNQEGDQQVKGKIRSLMFQAAKKRMMQNIPNADVVVTNPTHYAVALRYDSTKERAPRVL 287

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           AKG + +A+++++IA E+ IPI E P LAR+L+K V I+  IP   Y+A+ +++ K+  
Sbjct: 288 AKGVDFLAQRIKEIAKENEIPIIENPPLARALYKDVDIDKEIPETLYQAMVEILIKVQQ 346


>gi|115523575|ref|YP_780486.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisA53]
 gi|115517522|gb|ABJ05506.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisA53]
          Length = 356

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 188/346 (54%), Gaps = 3/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+ + KTE P+ K+++DA   G+   S+E + +  I    + L  F       + +
Sbjct: 1   MSDDDSSE-KTEDPTQKRLDDAHQRGDVAKSQEVNTWFVIAGGTLVLSSFSGSIGAGLQN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL ++   + +    +    T + +  + L +P LL+ M+  +   ++Q   V + 
Sbjct: 60  PLRNLLENSWMIRTDGPGLLALAQTLIYVVIAALGVP-LLMLMIAAVAGNVLQHRLVFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F ++S  +G KR++       F+K   KII +G ++   L      +   +  +
Sbjct: 119 EGLKPKFSKLSPMQGAKRLFGKQAWATFLKGLFKIIALGAVMVAVLWPERHRLEAMVRFD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +++        ++L  ++  +A + V D  + Y  WY K KMS QEIK+E KQS G+P
Sbjct: 179 VAALMGTTITLTLQLLGAVVAMLAAVAVADFFFQYRTWYEKQKMSLQEIKEEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +   R+R +MM A  +A+++ITNPTHY++AL Y ++   APV VAKG + +A
Sbjct: 239 HIKGKLRQLRMQRMRQRMMAAVPKASVVITNPTHYSVALSY-ESGMQAPVCVAKGADAVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R++A  +++PI E   LAR+L+  V I+  +P   Y AVA++I
Sbjct: 298 LKIREVAKANDVPIVENVPLARALYATVKIDEEVPVEHYHAVAEVI 343


>gi|242309640|ref|ZP_04808795.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT
           98-5489]
 gi|239523641|gb|EEQ63507.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT
           98-5489]
          Length = 354

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 184/360 (51%), Gaps = 30/360 (8%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILA--CLIYLLF-FFSPGIYSVTSDL 62
           A + KTEAPS++KIE A  EGN   S + + F  ++    LI+L F F+  GI ++   +
Sbjct: 2   ADEEKTEAPSARKIEKAREEGNVLKSPDVNAFLGLVVGLVLIFLCFNFWVDGISNIFFQI 61

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           +        R     S  + +   L+     L+ P     ++ GI + + Q   +L    
Sbjct: 62  YNSFNQDLTR-----SDAISITISLTFQILYLLAPIFGALVLTGIVANISQSGFLLTTKA 116

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P  ++++   GIK I S+  L++    F+    V T   I+    +F  L F+     
Sbjct: 117 IQPKLQKLNFITGIKNIISLKKLLD---GFLITFKVMTAFIIA----FFVFLGFM----K 165

Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            +   + F +   +I +           L F   + + D     +Q++  L+MSKQE+KD
Sbjct: 166 ELTTVSLFPIGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKD 225

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G+  IK + +S+     + +MM+    A +++TNPTHYA+ALRY  T+  AP +
Sbjct: 226 EFKNQEGDQQIKGKIRSLMFQAAKKRMMQNIPSADVVVTNPTHYAVALRYDSTKERAPRV 285

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG + +A++++ IA EH IPI E P LAR+L+K V I+  IP   Y+A+ +++ K+  
Sbjct: 286 LAKGVDFLAQRIKDIAKEHEIPIIENPPLARALYKDVDIDKEIPETLYQAMIEVLIKVQQ 345


>gi|323158635|gb|EFZ44649.1| flagellar biosynthetic protein FlhB [Escherichia coli E128010]
          Length = 382

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 197/367 (53%), Gaps = 35/367 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+        
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 56  ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
                    +S+ +D +++L        E +  ++ L++ + L A  L+ P +L  ++F 
Sbjct: 59  MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFS 116

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
             S             ++P F +++   GIKR++S       +K+ +K ILVG++    L
Sbjct: 117 GKS-------------LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFL 163

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             ++  M+  ++ +P + + +A   V   +++++L +  +   D+ +       KL+MS+
Sbjct: 164 WHHWPQMMRLMAESPITAMGNAMDLVGLCVLLVVLGVIPMVGFDVFFQIFSHLKKLRMSR 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           Q+I+DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + + 
Sbjct: 224 QDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKM 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++
Sbjct: 284 SAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 343

Query: 347 YKIYHKK 353
             ++  K
Sbjct: 344 AWVWQLK 350


>gi|291558215|emb|CBL35332.1| flagellar biosynthetic protein FlhB [Eubacterium siraeum V10Sc8a]
          Length = 353

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 182/351 (51%), Gaps = 6/351 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + KK +D   +G    S+E ++   ++    +L  F   G Y     L+ +
Sbjct: 2   AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIF---GNYMFQMLLNFM 58

Query: 66  LASAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             S +   +    +   + +   +++     V P L + ++  +   ++Q   + ++  +
Sbjct: 59  EQSMSSIDKTGNTVEFAMSVFWKVAIICVCTVGPILAVGVVLSVLPVIVQTKGLFSMEAM 118

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP F R++   GIKR++S+  LV  +K  ++II+V  I+   + +        I  +   
Sbjct: 119 KPKFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIK 178

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I+ +   T   +++ I + +  +   D  + +  +  KLKMSKQE+KDE KQ  G+P IK
Sbjct: 179 IVAYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIK 238

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKK 302
            + K   +   + +MM+    A +++ NPTHYA+AL+Y  +T   APV+VAKG + +A +
Sbjct: 239 GKIKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALR 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +  +A EHN+ I E   LAR L++ V I   IP  FY AVA+++  +Y ++
Sbjct: 299 IVAVAEEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVYEEQ 349


>gi|317051542|ref|YP_004112658.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5]
 gi|316946626|gb|ADU66102.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5]
          Length = 354

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 187/372 (50%), Gaps = 47/372 (12%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++   KTE P+ KK+E A  EGN   S++ S  + + A ++ L F            LH 
Sbjct: 4   ESDQEKTEEPTPKKLEKAREEGNVAKSKDMSDTAVLFAGVMTLYF------------LH- 50

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL------ 118
                 +R LE      F +    L  +R   P +     FGI + L+Q + +L      
Sbjct: 51  ------ERMLEGF----FAIMRNYLDLTRNTFPTINEMPSFGI-TILLQMLHILWPLFLA 99

Query: 119 --------NLNH---------VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
                   N+           V P + +++  +GI + +S+ NL+   KS +K+ + G +
Sbjct: 100 LTLFALAINIGQIGLLWSSKAVAPKWSKLNPIKGIAQKFSLKNLIEVTKSLLKVSVFGPV 159

Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
                 + + ++L  +   P  I   A   + K+ I I+L +  ++ +D  +  +Q + K
Sbjct: 160 AYFIAKDEFGSILMMMHLTPIEIFATALMIIFKIWITIILIMLIVSAVDFYFQKYQHHEK 219

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           LKMSKQE+K+E KQ  GNP +K R +S+ R     +MM    ++ ++ITNP   A+AL+Y
Sbjct: 220 LKMSKQEVKEERKQMDGNPEVKQRIRSLQREMAMKRMMGDVPKSDVVITNPLFLAVALKY 279

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
                 AP LVAKGQ L+A+++R +A EH+IPI ++P LAR L+  +     I    Y+A
Sbjct: 280 DTEVKAAPYLVAKGQELVAQRIRDLALEHDIPIQQDPLLARQLYDSLEPGDEITHELYQA 339

Query: 342 VAQLIYKIYHKK 353
           VA+++ +IY +K
Sbjct: 340 VAEILAEIYRQK 351


>gi|117617532|ref|YP_855917.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558939|gb|ABK35887.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 376

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 179/357 (50%), Gaps = 16/357 (4%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D    +TE P+ K+++ A  +G    S+E    S +LA +  LL        S+   +  
Sbjct: 3   DTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKE----SLAGAMVK 58

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN--- 121
           +L        E       ++T L      L+ P  LLFM+  I ++ +  I +  +N   
Sbjct: 59  VLTMGFTLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAF-VGNILMGGMNFSS 117

Query: 122 -HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179
             + P + ++S   GIKR++ + +LV  +KS  K++ +       L+  +  +L+  +  
Sbjct: 118 EAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEG 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSY 237
            P  I+      +    ++I+L  A + ++ I   + QW    +LKM+KQE+KDE K S 
Sbjct: 178 YPGGIIDALDLLL---WMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSE 234

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQ 296
           G P +K R + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG 
Sbjct: 235 GKPEVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGT 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + IA K+R+IA E+ IP+   P+L R+++    I   IP   + AVAQ++  +Y  K
Sbjct: 295 DEIAMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 351


>gi|54307250|ref|YP_128270.1| FlhB flagellar biosynthetic protein [Photobacterium profundum SS9]
 gi|46911670|emb|CAG18468.1| Hypothetical FlhB flagellar biosynthetic protein [Photobacterium
           profundum SS9]
          Length = 375

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 194/364 (53%), Gaps = 28/364 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           MSEN + D KTE PS +K+  A  EGN P S+E  +   ++ A L  LL  FS  +  + 
Sbjct: 1   MSENSSQD-KTEQPSQQKLRKAREEGNLPRSKELVTALMTLGAAL--LLSAFSSDLAHMF 57

Query: 60  SDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRI 115
            ++  L LA   +   E      F+L HLS S + ++    P   L ++  I + +I+  
Sbjct: 58  DEVATLNLALPKKAAFEP----EFMLKHLSFSLTSMIFTISPIFGLLLLVTILANIIRGG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
             +++   +P   +++   GIKR++S  +LV  +KS +K+ L+G  +   L+ N+ T + 
Sbjct: 114 WNISVTAAQPKLSKLNPLSGIKRMFSTKSLVELVKSILKVSLIGGTLYWLLS-NHLTQII 172

Query: 176 FISANPHS--------ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
            +   P +        IL+   F+      + LL IA L +   GW Y +   +LKM+KQ
Sbjct: 173 ALQRLPMTEAILQTVDILWQGLFSFG----LALLLIAVLELPYAGWDYTK---QLKMTKQ 225

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+K+E K S G P +K + + + +   + +M +   +A ++ITNPTHYA+AL+Y   +  
Sbjct: 226 EVKEEHKNSEGKPEVKAKIRQLQQQMSQRQMHKTVPQADVVITNPTHYAIALKYDLDKAS 285

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP ++AKG + +A +MRKIA  HN PI E P+L R+++        IP   Y AVA ++ 
Sbjct: 286 APFVLAKGTDQMALEMRKIARHHNCPIVEIPALTRAVYYSTNEWQEIPAPLYVAVAHILT 345

Query: 348 KIYH 351
            ++ 
Sbjct: 346 FVFQ 349


>gi|78355426|ref|YP_386875.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217831|gb|ABB37180.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 357

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 188/356 (52%), Gaps = 22/356 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M + D   ++TE  + K+   A  EGN P S+E       +A  I  L+ +   I S   
Sbjct: 1   MPQQDP--SRTEQATPKRRRKARGEGNVPKSQEVPKTFVTMAGTI-ALYVYMDHIASEMM 57

Query: 61  DLH------VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            L+       ++  AT + + D      LL  +S   + +++P ++LF+   + +Y++ R
Sbjct: 58  GLYEHFFRNAVMFEATPQAVYD------LLLWISGKLALMLLP-IMLFL--ALVAYVVIR 108

Query: 115 IPVLNL---NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENY 170
           + V  L      KP F R +L +G+KR++ S   L+   KS +   ++G    I +    
Sbjct: 109 LQVGKLWAPKVFKPKFARFNLIKGLKRLFISPQTLIRLGKSILMAAVIGIAPYIVIRNEM 168

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
              L    A P +I  +      K++   +L +  + + D+ ++   +   LKM+K E+K
Sbjct: 169 HHFLPLFYATPTAIGVYMLEMGMKMVKYAMLPMLVIAIADLWYTRWDYEENLKMTKDEVK 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ+ G+P +K +Q+      +  +M+E   +A +++TNPTHYA+ALRY   E  APV
Sbjct: 229 DERKQAEGDPAVKAQQRQKMMEVMAQRMLENVPKADVVVTNPTHYAVALRYDAVEAPAPV 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++AKG + +A++++++A EH +PI E   LAR+L++QV +   IP   Y+AVA L+
Sbjct: 289 VLAKGVDHLAERIKEVAREHRVPIRENVPLARALYRQVEVGDMIPEELYQAVASLL 344


>gi|149908444|ref|ZP_01897107.1| flagellar biosynthesis protein [Moritella sp. PE36]
 gi|149808607|gb|EDM68542.1| flagellar biosynthesis protein [Moritella sp. PE36]
          Length = 376

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 188/356 (52%), Gaps = 12/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    +TE  + KK+  A  +G    S+E +    + A     L F      ++  
Sbjct: 1   MAEKDG-QEQTEDATEKKLTQAREKGQVVRSKELATTFVLTATGAAFLAFGD----ALAR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFG--IGSYLIQRIP 116
            L + + S  Q + EDI     LL  +S+S   L  P  G+++   F   IG+ L+  + 
Sbjct: 56  ALVINMTSLFQLEREDIFSPDALLEIVSVSIKPLFWPMFGIMIVGFFAGIIGNILMGGM- 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P   ++S + G+KR+     +V  +KS  K+ +V TI  + L   +  +++F
Sbjct: 115 VFSGESIRPKASKMSPKAGLKRMMGPQAMVELIKSIAKVAVVVTIALLVLKVQFLQIMEF 174

Query: 177 ISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            S  P +I +  +   +  V I +   +  +  +D+ + Y +   +L+M+KQE+KDE+K 
Sbjct: 175 -SLQPLNISIIQSLNFLTDVFIWLCASLIIIVAIDVPYQYWKHAKELRMTKQEVKDEMKD 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             GNP +K + + +     + +MM     A +IITNPTHY++AL+Y ++ N AP +VAKG
Sbjct: 234 VNGNPQLKGKIRQMQMEISQRRMMGDVPDADVIITNPTHYSVALKYEKSGNAAPKVVAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A ++R++A EH +PI E  +L R+++    I+  IP   + AVAQ++  +Y 
Sbjct: 294 VDQVAFRIREMAKEHKVPILESAALTRAIYHSTEIDDPIPEGLFIAVAQILAYVYQ 349


>gi|186477710|ref|YP_001859180.1| flagellar biosynthesis protein FlhB [Burkholderia phymatum STM815]
 gi|184194169|gb|ACC72134.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
          Length = 411

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 187/365 (51%), Gaps = 35/365 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD-L 62
            D+   KTE+ + +++E A  EG    SRE + F+     L+   F  + G+  +  + +
Sbjct: 12  EDSDLEKTESATPRRLEKAREEGQVARSRELATFA-----LVAAGFLGAWGMSGMIGEHV 66

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG-------------LLLFMMFGIGS 109
             +L +A     E     VF      +SA  +   G               L     +G 
Sbjct: 67  QTMLRTAFTFNHE----TVFDPKRAFISAGAVTREGAYMLMPLLALLGLAALLAPMAMGG 122

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
           +L      L+   + P+F+R++   G+ RI+SIN  +    S  KI++VG I  +++   
Sbjct: 123 WL------LSTKSLAPNFQRLNPVSGLGRIFSINGWIQLGMSLAKIVVVGLIGGLAIWHR 176

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSK 226
              +L   +   H  L +A   +     M +  +  L  +D+    WS+H+   KL+M+K
Sbjct: 177 REDILALATQPLHVALSNAGHLIAVCCAMTVGGMFLLAAMDVPYQLWSFHK---KLRMTK 233

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           +E+K E ++S G+P +K R +S  R+  R +MM    +A +++TNPTH+A+AL+Y   E 
Sbjct: 234 EEVKREHRESEGDPHVKARIRSQQRAMARRRMMANVPKADVVVTNPTHFAVALQYTDGEM 293

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG NL+A ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++
Sbjct: 294 GAPKVVAKGVNLVAARIRELAVENNVPLLEAPPLARALYHNVELNREIPGALYGAVAEVL 353

Query: 347 YKIYH 351
             +Y 
Sbjct: 354 AWVYQ 358


>gi|187926251|ref|YP_001892596.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J]
 gi|241665739|ref|YP_002984098.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D]
 gi|187728005|gb|ACD29169.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J]
 gi|240867766|gb|ACS65426.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D]
          Length = 387

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 180/367 (49%), Gaps = 50/367 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S +++E A  EG+ P SRE + F+         L   S G   V  D  V  AS
Sbjct: 8   EKTEPASPRRLEQAREEGDVPRSRELASFA---------LTAVSAGGLWVMGDSIVRAAS 58

Query: 69  A-TQRKLE-----------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           +   R LE             +++      L+++     + GL+L ++    S L     
Sbjct: 59  SFLARCLEFHRYNYTSGQDQWNYVTGQFMPLAMT-----LGGLMLMLVIAALSPLALTRG 113

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV------------GTIITI 164
            ++   + P   R+   +G+ R++S+  L+   +  +K+ L+            G +I +
Sbjct: 114 AISFKPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIEL 173

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
              +    M D +      +   AF  +  V++++         +D+  S  Q+  K +M
Sbjct: 174 PQQDLGVAMRDTLH-----VAGVAFLCMAAVMMLV-------AAVDVPLSLWQYARKHRM 221

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +K+E++ E ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + 
Sbjct: 222 TKEEVRKEHRESEGDPHVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEK 281

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E  AP ++AKG +++A K+R++  EH IPI E P LAR+L++   I   IP   Y AVA+
Sbjct: 282 EGGAPRVLAKGADMVAAKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAE 341

Query: 345 LIYKIYH 351
           ++  +Y 
Sbjct: 342 VLAYVYQ 348


>gi|94500293|ref|ZP_01306826.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp.
           RED65]
 gi|94427592|gb|EAT12569.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp.
           RED65]
          Length = 375

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 192/365 (52%), Gaps = 29/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE P+ ++++ A ++G  P S+E S  S +L   +  ++  +  ++S   
Sbjct: 1   MAENENSQEKTEEPTPRRLQKAKDDGQIPRSKELST-SLVLIVGVLSIWLLADLLFSGAK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPV 117
           ++        + ++ D      +L HL  SA   ++   P ++L ++    + L     +
Sbjct: 60  NIFQYNFVIEREQIFDEKQ---MLKHLGASAYEAILTMTPTMMLILLAAALAPLALGGWM 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFTMLDF 176
            +   + P   R+S   G+KR++ + +LV  +KS+ K+++V G            T L F
Sbjct: 117 FSGKALLPKANRISPLSGLKRMFGVKSLVELIKSWAKVLVVIGC-----------TFLLF 165

Query: 177 ISANPHSILYHAFFTVRKV-----LIMILLFI---ATL--TVLDIGWSYHQWYSKLKMSK 226
              N   +  H     R +     L+M+  FI   +TL  +V+D+ +  +++  K++MS 
Sbjct: 166 FIFNDKVLFLHREPGTRAIADSADLVMLCAFILACSTLLVSVIDVPYQIYEYMQKMRMSL 225

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE K++ G P +K R + +     + +MM+    A ++ITNPTHYA+AL+Y   + 
Sbjct: 226 QEVKDEHKETEGKPEVKQRIRRLQYEMSQRRMMDDVKDADVVITNPTHYAVALKYDSDQM 285

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP++VAKG + +A K+R+IA ++ I + E P LARS++    I   IP   Y AVAQ++
Sbjct: 286 GAPLMVAKGTDEVALKIREIAKQNKIAVVEAPPLARSIYAFTKIGKEIPEGLYVAVAQVL 345

Query: 347 YKIYH 351
             +Y 
Sbjct: 346 AYVYQ 350


>gi|269103165|ref|ZP_06155862.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163063|gb|EEZ41559.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 192/360 (53%), Gaps = 16/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+++D    +TE  + ++ + A  +G  P SRE +  + ++A  + L++F       + +
Sbjct: 1   MADSD-DQERTEDATPRRRQQAQEKGQVPRSRELASVAVLIAGAVGLMWFGGSLGQALAA 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIP 116
           V S L  L    T+ ++ D+  +  +++ +    A+ L +  + LF+   IG+  +  + 
Sbjct: 60  VMSRLFSL----TREEVFDLGAMSTVISEVIWGIAAPLTLVLVFLFVAAFIGAAGLGGV- 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +     P   +++   G KR++ + + V  +KS +K   VG +  ++    Y ++ DF
Sbjct: 115 RFSSEAAMPKLSKMNPLSGFKRMFGMQSWVELIKSILK---VGLVSGVAYYLMYDSLDDF 171

Query: 177 ISANPHSI---LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                 S    +YHA  T+   +++I   +  +  +D+ +  +Q+  +LKM+KQEIKDE 
Sbjct: 172 FQLAQESYPNNIYHALSTLLHFILLISCSLLVVVAIDVPFQIYQFNQQLKMTKQEIKDEY 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G P +K R + + R   + +MM    +A +IITNP HY++ALRY    + APV++A
Sbjct: 232 KETEGKPEVKGRIRMLQREMAQRRMMADVPQADVIITNPEHYSVALRYDPKLDSAPVVIA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG +  A K+R+IA EHNI I   P LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 292 KGVDHTAFKIREIAKEHNIDIVPVPPLARAIYHTTELEQQIPDGLFIAVAQVLAYVFQLK 351


>gi|167750709|ref|ZP_02422836.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702]
 gi|167656388|gb|EDS00518.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702]
          Length = 353

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 182/351 (51%), Gaps = 6/351 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + KK +D   +G    S+E ++   ++    +L  F   G Y     L+ +
Sbjct: 2   AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIF---GNYMFQMLLNFM 58

Query: 66  LASAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             S +   +    +   + +   +++     V P L + ++  +   ++Q   + ++  +
Sbjct: 59  EQSMSSIDKTGNTVEFAMSVFWKVAIICICTVGPILAVGVVLSVLPVIVQTKGLFSMEAM 118

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP F R++   GIKR++S+  LV  +K  ++II+V  I+   + +        I  +   
Sbjct: 119 KPKFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIK 178

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I+ +   T   +++ I + +  +   D  + +  +  KLKMSKQE+KDE KQ  G+P IK
Sbjct: 179 IVAYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIK 238

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKK 302
            + K   +   + +MM+    A +++ NPTHYA+AL+Y  +T   APV+VAKG + +A +
Sbjct: 239 GKIKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALR 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +  +A EHN+ I E   LAR L++ V I   IP  FY AVA+++  +Y ++
Sbjct: 299 IVAVAQEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVYEEQ 349


>gi|320015476|gb|ADV99047.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 259

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 129/219 (58%)

Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
           G+KR++S   L   +K+ +K  LVG +  + L  N+  M+  I+A P + L  A   +  
Sbjct: 6   GLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIF 65

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
             ++++L ++ +   D+ +       KL+M+KQ+I+DE K   G+P +K R +   R+  
Sbjct: 66  CGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQRAMA 125

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           R +MM    +A +I+TNPTHYA+AL+Y +++  AP ++AKG   +A ++R++  EH IP+
Sbjct: 126 RRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPL 185

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 186 LEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 224


>gi|146307831|ref|YP_001188296.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp]
 gi|145576032|gb|ABP85564.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp]
          Length = 378

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 193/362 (53%), Gaps = 23/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++   K+E P+SK++E++  +G    S+E +  +  L   + L+ F   G Y    
Sbjct: 1   MAESESGAEKSEEPTSKRLEESRKKGQIARSKELNTLAVTLTGTVALIIF---GAYMGNV 57

Query: 61  DLHVLLASATQRK---LEDISHIVFLLTHL--SLSASRLVIPGLLLFMMFG---IGSYLI 112
            + ++  + +  +   + + S  ++LL     +L A + +   LL+  + G   +G +L 
Sbjct: 58  LMDLMRGNFSLPREVLMHEGSMALYLLASGKHALVAIQPLFLALLIASVIGPIALGGWL- 116

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
                 +   ++P   R++   G+KR++S+  LV  +K+  K +++  +  + L  +   
Sbjct: 117 -----FSAEALQPKASRMNPLAGLKRMFSVQALVELLKALAKFLVILAVALVVLALDQDD 171

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +L   +      + H+   V      +   L+ IA + V    WS+ Q   KLKM+KQE+
Sbjct: 172 LLAIANEPVEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQ---KLKMTKQEV 228

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE K + G P +K R + + R     +MM+A  +A ++ITNPTH+A+AL+Y   +  AP
Sbjct: 229 RDEYKDTEGKPEVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAP 288

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +L+AKG + +A K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +
Sbjct: 289 MLLAKGGDFLALKIREIAQEHKVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYV 348

Query: 350 YH 351
           Y 
Sbjct: 349 YQ 350


>gi|308050045|ref|YP_003913611.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
 gi|307632235|gb|ADN76537.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
          Length = 374

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 188/359 (52%), Gaps = 29/359 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57
           MS++ A  +KTE  + ++I+ A  +G  P S++ +  +  + C + LL    +F+ G   
Sbjct: 1   MSQSAA--DKTEKATPQQIKKAREKGQVPRSKDLATAALFIGCALMLLASADWFARG--- 55

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQR 114
            T+DL     S T+   ED+     ++ H+  S      L+ P  LL  +  + +  +  
Sbjct: 56  -TADLLRYNMSLTR---EDLMAPDVMVRHVGASLVAMINLLSPLFLLIAVLALVAGALPG 111

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTI------ITISLT 167
            P+L+L + +    R+    GIKR++S+ +LV  +KS +K+ L+ GT+          L 
Sbjct: 112 GPLLSLKNAEFKGSRIDPIAGIKRMFSMKSLVELIKSILKVSLILGTLYFLLRGRLEGLL 171

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
             Y   LD   A   S L     T    L ++LLFIA   ++D+ W  +    +LKM++Q
Sbjct: 172 GLYRMPLDQAVAEGVSFLAFGILT----LGVVLLFIA---LIDVPWQIYDHQKELKMTRQ 224

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           ++KDE KQ  G P +K R + I +   R +   A  +A +++TNP HYA+AL+Y     D
Sbjct: 225 QVKDEHKQMEGKPEVKARIRQIQQKMARSRAETAIPKADVLLTNPQHYAIALKYEPDRAD 284

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AP ++AKG + +A  MR++A  H + I E P LAR+++    ++  +P   Y A+AQ++
Sbjct: 285 APFVLAKGTDELALHMRQLARRHGVEIIEAPPLARAVYHSTQVDQMVPQALYVAIAQVL 343


>gi|82702438|ref|YP_412004.1| flagellar biosynthesis protein FlhB [Nitrosospira multiformis ATCC
           25196]
 gi|82410503|gb|ABB74612.1| flagellar biosynthetic protein FlhB [Nitrosospira multiformis ATCC
           25196]
          Length = 392

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 189/361 (52%), Gaps = 22/361 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   +TE  S +++E +  EG AP S E S F+ ++A    L          ++S
Sbjct: 1   MSE-ESDQERTEPASPRRLEKSREEGQAPRSTELSTFALLIAAGTGLWLMGG----HLSS 55

Query: 61  DLHVLLASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  L+        E   + + +   L   S  A     P L+L ++  + + ++    +
Sbjct: 56  QLARLMKEGMHIPRETGFEPARLAERLFDQSFHALITFAPFLILMILVALVAPMLLSGWL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P FKR++   G+ R++S+++L+   K+ +K  L+G     ++     ++L  I
Sbjct: 116 FSWKSLNPDFKRINPLSGLSRMFSLHSLLELAKALLKAALIGGAGVWTIWHYKESVLSLI 175

Query: 178 SANPHSILYH-------AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +      L H       +FF++   +I+I    AT+ V    W +   Y KL+M+K+E++
Sbjct: 176 ARPLVPGLTHMGELVALSFFSIAGTMILI----ATVDVPFKLWDH---YRKLRMTKEEVR 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K++ GNP IK R ++  R   R +MM    RA +IITNPTHY++ALRY   +  AP 
Sbjct: 229 QENKETEGNPQIKGRIRAQQREMARKRMMTEIPRADVIITNPTHYSVALRYEDGKMRAPR 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG +L+A K+R+I ++H +P+ E P LAR+L++   +   IP   Y  VA+++  +Y
Sbjct: 289 VVAKGMHLLALKIREIGHQHKVPVLEAPPLARALYQHTELGDEIPQTLYNVVAEVLAYVY 348

Query: 351 H 351
            
Sbjct: 349 Q 349


>gi|292669764|ref|ZP_06603190.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541]
 gi|292648561|gb|EFF66533.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541]
          Length = 374

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 177/350 (50%), Gaps = 7/350 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     S+ +    +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFSLKLLWDSIYLSIATYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            ++  Q    D  +I+ +   + +  ++   P +L  M+ G+     Q    LN +    
Sbjct: 84  FSNLNQ--TVDTENIIRIFIGIIIVLAKTAFPIMLFIMVIGLAINFFQ--VGLNFSAESI 139

Query: 126 SFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            FK   L    G  RI+S   LV   KSF KII++G  +   + E    M  F+  +  +
Sbjct: 140 EFKLDKLNPINGFGRIFSKRALVELAKSFFKIIVIGFFLYRFIHEQILAMPQFMFFDLTT 199

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L      + ++  +++  I  +   D G+   Q    LKM+KQE+KDE+KQ+ G+P IK
Sbjct: 200 SLALVAEIIFQMAFIVIGVIMIMAFCDYGYQRWQTTQDLKMTKQEVKDEMKQTEGDPQIK 259

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            + +   R     +MM+   +A +IITNPTHYA+AL Y Q    AP +VAKGQ+L+A+++
Sbjct: 260 GKIRQKQRQMAMARMMKEVPKADVIITNPTHYAVALSYEQGMV-APTVVAKGQDLVAQRI 318

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++I  +  +PI E   LAR+L+  V +  A+P   Y+AVA+++  +Y  K
Sbjct: 319 KEIGRDARVPIIENKPLARTLYAAVQVGDAVPHELYQAVAEVLAYVYRLK 368


>gi|87119470|ref|ZP_01075367.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121]
 gi|86164946|gb|EAQ66214.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121]
          Length = 380

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 193/377 (51%), Gaps = 49/377 (12%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLF-------------SSILACLIYL 47
           M+EN+    KTE  SSKK+++A N+GN P S++ S                S+LA  +  
Sbjct: 1   MAENEDGAEKTEDASSKKLDEARNKGNLPRSKDLSSALLLLIAAASLYATGSLLAQDMSN 60

Query: 48  LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
           +F F           + +L+ A      D+     ++ HLS S+  ++   L++ ++  I
Sbjct: 61  VFQF-----------NFVLSRA------DMFDTAKMVIHLSDSSISMMDSLLVMMIVLAI 103

Query: 108 GSYLIQRIPVLNLNH----VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI-- 161
              ++  + +   N     + P   +++   GIKR++S+N+LV  +KS  K+ LV  +  
Sbjct: 104 AG-IVGSVALGGFNFSWEPLIPKLSKMNPISGIKRMFSVNSLVELLKSIAKVSLVLVVAF 162

Query: 162 --ITISLTENY---FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
             + I L E     F  L+    +  +++  AF  V     + +L IA + V    WS+ 
Sbjct: 163 FVLKIYLPEMLLVPFQSLELALGHAINVVIWAFIYVS----LAVLLIAAVDVPYQAWSHK 218

Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
               KLKM+KQE KDE K + G+P IK R +   R     +MME    A +IITNPTH++
Sbjct: 219 ---DKLKMTKQETKDEYKNAEGDPQIKARIRQAQRQASMRRMMEDVPNADVIITNPTHFS 275

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL+Y      AP L+AKG + +A K+R+I   HNIP+ + P+LARS++    I   IP 
Sbjct: 276 VALKYEAGVKGAPKLLAKGNDFVALKIREIGTFHNIPVVQSPALARSIYHYTEIGEEIPT 335

Query: 337 VFYKAVAQLIYKIYHKK 353
             +++VAQ++  +Y  K
Sbjct: 336 GLFQSVAQILAYVYQLK 352


>gi|167623392|ref|YP_001673686.1| flagellar biosynthesis protein FlhB [Shewanella halifaxensis
           HAW-EB4]
 gi|167353414|gb|ABZ76027.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
           HAW-EB4]
          Length = 377

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 183/361 (50%), Gaps = 21/361 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  +S+K++ A ++G    S+E    + ++A  + LL    P I     
Sbjct: 1   MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMT-GPDIAQAMH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMF--GIGSYLIQRIP 116
           ++   L + ++ ++ D      ++    +  + L +P  G ++F+      G+  +  I 
Sbjct: 60  NIMTKLFTMSRDEIFDTKQ---MMNVWGVIGTELALPLMGFIVFLALIAFAGNVALGGIS 116

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISLTENYFTML 174
             ++    P   ++S   G KR++ +  LV   K   K  ++ +   + +S   N   ML
Sbjct: 117 -FSVKAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITAFLLLSTYLNDILML 175

Query: 175 --DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIK 230
             D +  N    +YHA   V  V I ILL  +T  ++ I   +  W    +LKM+KQE+K
Sbjct: 176 SQDHLPGN----IYHALDIV--VWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVK 229

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE K + G P +K R + +     + +MM     A +I+ NP HYA+A++Y  T + AP 
Sbjct: 230 DEYKDTEGKPEVKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPF 289

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG + +A K+R+IA EH++ I   P LAR++F    I+  IP   + AVAQ++  ++
Sbjct: 290 VVAKGVDEVAFKIREIAREHDVAIVSAPPLARAIFHTTKIDQEIPEGLFTAVAQVLAYVF 349

Query: 351 H 351
            
Sbjct: 350 Q 350


>gi|150390466|ref|YP_001320515.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens
           QYMF]
 gi|149950328|gb|ABR48856.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens
           QYMF]
          Length = 361

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLF--FFSPGIYSVTSDLHV 64
           + KTE P+ KK +D+  +G    S+E  S F  I A +I  LF  +    + S T  ++V
Sbjct: 12  EEKTERPTPKKRKDSREKGQVLQSKELNSAFLLIGAFVILGLFSSYIGMTMKSFTRSIYV 71

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              +     L  I ++  LL +   +  +++ P  +  ++ G+    +Q   +     + 
Sbjct: 72  EYLNTDY--LFSIQNLYRLLVYSLYNLLKIIAPISIASLLIGLAVSYLQVGYLFTTKTLA 129

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
               +++  EG K+I+S+  +V   KSF+KI LVG I+         T+ + ++ +   I
Sbjct: 130 FKLSKLNPIEGFKKIFSLKAIVELAKSFIKIGLVGYIVFQYAQGQLETIFNTMAMDMDGI 189

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +    + +  + I   + +  L   D  +  +++   LKM+KQE K+E KQS GNP IK+
Sbjct: 190 IQVLIYILVNIGIRAGVVLLVLAGFDYLYQKYEYDKNLKMTKQETKEEYKQSEGNPQIKS 249

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + K   R     +MM+   +A +IITNPTH+A+A++Y   +  AP ++AKGQ+++A+ ++
Sbjct: 250 KIKEKQRQMSTKRMMQEVPKADVIITNPTHFAIAIQYNPDDFQAPRVIAKGQDILAQSIK 309

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           K+  E+++PI E   LARSL+  V I + IP   Y+AVA+++  +Y 
Sbjct: 310 KVGLENDVPIVENKPLARSLYDTVEIGAFIPTELYQAVAEILAYVYR 356


>gi|319787087|ref|YP_004146562.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465599|gb|ADV27331.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis
           11-1]
          Length = 379

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 188/368 (51%), Gaps = 35/368 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGI-- 55
           M+EN+    KTE P+ ++ E A+ +GN P SRE   A LF S +  ++     F+ G   
Sbjct: 1   MAENEDGQEKTEQPTGRRREKAIKQGNLPRSRELSNAVLFGSGVVAMMAGGSMFARGASG 60

Query: 56  ---YSVTSDLHVLLASATQ----RKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGI 107
               ++T DL V+L S  +      +  +  ++ +L  + ++ A+  V PGL+    F  
Sbjct: 61  WFRQALTPDL-VMLESPGELFGYMGILLLRLVLVMLPLIGVALAACFVAPGLMGGFHF-- 117

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
                          ++P  +R++   G+KRI+S   LV   KS +++ L+     + L 
Sbjct: 118 -----------TTESLQPKPERLNPLAGLKRIFSSEGLVEVAKSLLRVALLVIACGLVLV 166

Query: 168 ENYFTMLDFISANPHSILYHAFFT----VRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +    D + A P   L  A  T      ++L    + +  L + D  +    W  KLK
Sbjct: 167 HGF----DVLKAMPGQSLEDAASTGLHFAGRLLGAAAVALVLLALADAPYQKWNWTRKLK 222

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M++QE+++E+K++ GNP +K + + +     + +MMEA   A +++ NPTHYA+AL+Y  
Sbjct: 223 MTRQEVREEMKETDGNPQVKGKIRQMQFQMSQRRMMEAVPTADVVVVNPTHYAVALKYEG 282

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
               AP +VAKG + +A ++R++A +H I     P LAR+L+++  I+  IP   Y AVA
Sbjct: 283 GTMRAPKVVAKGVDEMAMRIREVADQHRIATVSAPPLARALYREGEIDKEIPVRLYAAVA 342

Query: 344 QLIYKIYH 351
           Q++  +Y 
Sbjct: 343 QVLSYVYQ 350


>gi|77457779|ref|YP_347284.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf0-1]
 gi|77381782|gb|ABA73295.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens Pf0-1]
          Length = 379

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 181/356 (50%), Gaps = 11/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  + +LA    LL F       +  
Sbjct: 1   MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTLAIMLAGSAALLIFGGMLAQELMD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115
            +      + +  +++ S   FL++    +L A + ++  LLL    G   +G +L    
Sbjct: 61  LMRQNFTLSREVIMDERSMATFLMSSGLQALLAIQPIMITLLLAAFLGPIALGGWL---- 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                  + P F R++   G+KR++S+  +V  +K+  K ++   +  + L  +   +L 
Sbjct: 117 --FAAGSLAPKFSRMNPAAGLKRMFSMKAVVELLKALAKFLITLGVALVVLNSDIDDLLR 174

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
                    + H+   V    + +   +  +  +D+     +   KLKM+KQE++DE K 
Sbjct: 175 IAHEPLDRAIIHSLQLVGWSSLWLACGLIIIAAVDVPVQIWESIKKLKMTKQEVRDEHKD 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G P +K R + + R   + +MM A   A ++ITNPTHYA+AL+Y   +  AP+L+AKG
Sbjct: 235 QEGRPEVKQRIRQLQREMSQRRMMAAIPDADVVITNPTHYAVALKYDAEKGGAPMLLAKG 294

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A K+R+IA  +N+ + E P+LARS++    +   IP   Y AVAQ++  +Y 
Sbjct: 295 SDFLALKIREIAVANNVMLLESPALARSIYYSTELEEEIPGGLYLAVAQVLAYVYQ 350


>gi|326204607|ref|ZP_08194463.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM
           2782]
 gi|325985174|gb|EGD46014.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM
           2782]
          Length = 381

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 186/352 (52%), Gaps = 13/352 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL--HVLL 66
           +KTE  + KK  DA  +G    SRE +  S IL   +  +  F   IY+  S        
Sbjct: 30  DKTEKATPKKKSDARKKGQVFQSREVTA-SLILIVTVVAMRIFGGTIYAQLSQYLKKTFN 88

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              T +   D + +  L   + +  ++ V+P LL+  +  +     Q   +  +  +K  
Sbjct: 89  EYLTIKDAIDFNILANLFIDVLMVLAKTVLPLLLVAFLTALIVNYAQVGILFTMETLKIK 148

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL- 185
             R++   G KRI+S+ ++V  +KS +KII+VG +    L      +L  I  +  S+L 
Sbjct: 149 GDRINPLSGFKRIFSLRSVVELLKSIIKIIIVGWVAYSYLKSKTEQVLTLIDTDLMSVLI 208

Query: 186 --YHAFFTV--RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
               A FTV  R  + M+LL  A     D  +  + +   LKM+KQE+K+E KQ  GNP 
Sbjct: 209 FIADAAFTVALRICMAMVLLGFA-----DYLYQRYDYEKNLKMTKQEVKEEYKQMEGNPE 263

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK++ K   R     +MM+   +A +IITNPTH+A+AL+Y   ++ AP +VAKGQ+ IA 
Sbjct: 264 IKSKIKQKQRQMSLKRMMQDIPKADVIITNPTHFAVALKYDSEKSAAPFVVAKGQDYIAL 323

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++IA ++ + I E   LAR+L+  V I  AIPP  Y+AVA+++  +Y+ K
Sbjct: 324 RIKQIAADNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375


>gi|260886652|ref|ZP_05897915.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
 gi|330839517|ref|YP_004414097.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
 gi|260863795|gb|EEX78295.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
 gi|329747281|gb|AEC00638.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
          Length = 366

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLA 67
            KTE P++K+  DA  +G    S+E S    +LA    +    S  +  + T  +H+   
Sbjct: 20  EKTEEPTAKRRNDARQKGQVARSQELSGAFVLLAGFFVMRALGSTILTEIETYTVHIY-- 77

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A   +  D   ++ L+    +  ++   P ++  ++ G+     Q   +     +    
Sbjct: 78  -ANMNQTVDAETVMRLIIDGMIVLAKTAFPVMIAILVMGLAINFYQVGFMFTTEPLSFKL 136

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++   G  RI+S  ++V  +KS +KI ++G  + + L+     M +FI  +  S +  
Sbjct: 137 DKLNPITGFGRIFSKRSIVELLKSLLKIAIIGAFLYVYLSGEIMHMPEFIYLDLKSSMAR 196

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  ++  I++    +   D  +   Q    LKMSKQ+IK+E KQ+ G+P IK + +
Sbjct: 197 MGDIIFSLVFQIIIVYFVMAAADFAYQKWQTTQDLKMSKQDIKEEFKQTEGDPQIKGKIR 256

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +    ++MM+    A +I+TNPTHYA+AL+Y +    AP +VAKGQ+L+A+K++ IA
Sbjct: 257 QKQQQMAMNRMMKEVPEADVIVTNPTHYAVALKY-KAGMKAPEVVAKGQDLVAQKIKDIA 315

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH + I E   LAR+L+  V +   +PP  Y+AVA+++  +Y  K
Sbjct: 316 REHRVTIVENKPLARALYAAVDVGGIVPPELYQAVAEVLAYVYRLK 361


>gi|254250896|ref|ZP_04944214.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124893505|gb|EAY67385.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 414

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 130/227 (57%)

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +    + L 
Sbjct: 140 FDRLNPIAGLGRIFSIQGPIQLAMSVAKTLVVGGIGGIAIWRSKDELLGLATRPLGTALA 199

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K R 
Sbjct: 200 DALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRI 259

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++R++
Sbjct: 260 RQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARIREL 319

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 320 AAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366


>gi|304316890|ref|YP_003852035.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778392|gb|ADL68951.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 357

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 188/355 (52%), Gaps = 24/355 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-----PGIYSVTSDLH 63
            KTE  + K+ +DA  +G    SRE +  S+I+    +L+ +F+       I ++   L 
Sbjct: 9   EKTEPATPKRRQDARKKGQVFQSREVT--SAIITIAGFLVIYFTVQNSIEEIMNLIKYLF 66

Query: 64  VLLASATQR--------KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           +    A+          KL +I   VFL         +L++P +    +  + S   Q  
Sbjct: 67  LNYGGASDNTFTVNGIYKLFEIILPVFL---------KLILPTVATVFLVALVSTYAQVG 117

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V     +    +R++  EGIKR++S   ++  +K+ VKI ++G ++   L   Y  +  
Sbjct: 118 FVFTSESLNIKLERLNPLEGIKRMFSRRTILELLKAVVKIGILGYVMYSFLIGQYKGIPQ 177

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            +  +   ++ ++      +L+ I + +  L V+D  + +  + S L+MSK++IK+E K+
Sbjct: 178 LLDMSVQDLIKYSLNIFGGILLRIFIVLIVLGVVDYIFQWRDYESNLRMSKEDIKEEFKE 237

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + GNP IK+  K   R     +M++   +A ++ITNPTH A+AL Y    NDAPV+VAKG
Sbjct: 238 TEGNPQIKSEIKKKQRQISMRRMIQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKG 297

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           Q+ IA+++++ A +++I I E   LA+SL+K   I  +IPP  YKAVA+++  +Y
Sbjct: 298 QDYIAQRIKEEAIKYSIAIVENKPLAQSLYKTTDIGDSIPPELYKAVAEVLAYVY 352


>gi|170743254|ref|YP_001771909.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
 gi|168197528|gb|ACA19475.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
          Length = 353

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 131/220 (59%), Gaps = 1/220 (0%)

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           ++RVS   G+KR++       F K  +K+ LVGT+  + L  +   +       P ++L 
Sbjct: 126 WERVSPAAGLKRLFGPEAWFQFGKGILKVALVGTVAALVLWGDRDRLDALARLEPSALLP 185

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V +++  IL     + + D  +   +W ++L+M+K EIK+E+K+S G+P +K R 
Sbjct: 186 ATLALVLRLMAGILAAYLVIALGDAAYQRLRWRARLRMTKAEIKEEMKESEGSPEVKARL 245

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + I  +R + +MM A   AT+++ NPTH+A+AL Y +T   APV VAKG +++A ++R +
Sbjct: 246 RRIRATRAKKRMMAAVPGATVVVANPTHFAVALLY-ETGMAAPVCVAKGVDVLALRIRAL 304

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A E+ +P+ E P LAR+L   V I+ AIP   YKAVA++I
Sbjct: 305 AAENGVPVVENPPLARALHATVEIDQAIPTEHYKAVAEVI 344


>gi|194365643|ref|YP_002028253.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia
           R551-3]
 gi|194348447|gb|ACF51570.1| flagellar biosynthetic protein FlhB [Stenotrophomonas maltophilia
           R551-3]
          Length = 376

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 178/360 (49%), Gaps = 19/360 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS 57
           MSE+++   KTE P+ K++ DA  +GN P SRE   A++F + +  ++ +      G  +
Sbjct: 1   MSEDESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-----FMMFGIGSYLI 112
                     S  Q   E   H   LL    L  + LV+  LL       +M G+     
Sbjct: 61  WMKHALSPEQSLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLLMGGL--RWS 118

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q+  + ++N + P         G+KR+Y    +  F KS +++  VG    + +   + T
Sbjct: 119 QKAMLPDINRMNPM-------SGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDT 171

Query: 173 MLDFISANPHSILYHAF-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           +   I     + +     FT+R +L+     +  L  +D  +    W  KLKM+++E++ 
Sbjct: 172 LRGLIHHPLETAITDGLSFTLR-LLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRR 230

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E+K+S G+P +K R + + +     +MMEA   A +++ NPTHYA+AL+Y     +AP +
Sbjct: 231 EMKESEGSPEVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPKV 290

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VA G +  A ++R++A  + + I   P LAR+L+++  +   IP   Y AVAQ++  +Y 
Sbjct: 291 VALGVDETALRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQ 350


>gi|260438787|ref|ZP_05792603.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM
           2876]
 gi|292808776|gb|EFF67981.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM
           2876]
          Length = 370

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 190/361 (52%), Gaps = 16/361 (4%)

Query: 5   DAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           D P   +TE  ++KK++DA  +G    SR+ +   S+L   I L  +         ++  
Sbjct: 12  DGPGGQRTEPATAKKLKDARKKGQVAKSRDLTSSVSLLVFFIILKIYVGTMGTKFINEFK 71

Query: 64  VLL-----ASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRI 115
           V+       +AT  +L  +S   F   ++S   L    +++P +   ++      L+Q  
Sbjct: 72  VIYKKMGEVNATSLELNSLSR--FFKNYMSDAILDMLVILLPIMAAAVLVAFVGDLVQVK 129

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML- 174
                  +KP   + +   GIKRI+S+  LV  +KS + I+ +  ++T +  +    +L 
Sbjct: 130 WKPTAEPMKPKADKFNPVNGIKRIFSVKTLVQLLKS-IAIVAICMLVTYNKLKKEIGLLY 188

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
           +F + +  + +      +  V I I +    + + D  + Y ++ + +KMSKQE+KDE K
Sbjct: 189 NFYNISLEAAIIRMGDVLLDVGITISVIYLIVGIADFIFEYVKFKNDMKMSKQELKDEWK 248

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + GNP +KN+QK       R +MM+A   A ++ITNPTH+A+AL+Y Q    APV+VAK
Sbjct: 249 DTEGNPEVKNQQKRRMNEASRRRMMQAVPEADVVITNPTHFAVALKYEQNSGKAPVVVAK 308

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYH 351
           G++ +A+K+++ A ++ + I E   LAR L+  V + S IP   Y+AVA++   ++K+ H
Sbjct: 309 GEDYLAQKIKETARKNQVEIVENKPLARMLYYNVDLGSEIPQELYQAVAEVLAFVWKVKH 368

Query: 352 K 352
           K
Sbjct: 369 K 369


>gi|325527806|gb|EGD05073.1| flagellar biosynthesis protein FlhB [Burkholderia sp. TJI49]
          Length = 308

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 130/227 (57%)

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +    + L 
Sbjct: 37  FDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLDAALV 96

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K R 
Sbjct: 97  DALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRI 156

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++R++
Sbjct: 157 RQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARIREL 216

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 217 AAEHNVPLLEAPPLARALYHNVELEREIPGSLYAAVAEVLAWVYQLK 263


>gi|229827381|ref|ZP_04453450.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC
           49176]
 gi|229788319|gb|EEP24433.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC
           49176]
          Length = 387

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 182/357 (50%), Gaps = 22/357 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----FFSPGI-------Y 56
           +KTE  + KK+EDA  EG   ++R + L + ++  L++ +      F + G        Y
Sbjct: 34  DKTEKATPKKLEDARKEGR--VARSSDLINGLMLLLMFFVLRIFGNFMAKGFLESFVKYY 91

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           + T+D+ +        ++ D+   V L   +        +P L+   +      ++Q   
Sbjct: 92  NKTADISM--------EIFDVKQAVNLGNEIVFDIVIACLPVLIGSFLVAFAGNVVQIGW 143

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
            +    +KP   R++   G+KR++S   +V  +KS +K++ +  +    + + +  +L+ 
Sbjct: 144 KVTTKPLKPKLDRLNPIGGLKRMFSQEKVVELIKSILKVLAIAIVAYNEVKDRWLFILNL 203

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                   + + F  V  V + I +    + + D G+   +    L+MSKQE+KDE+KQS
Sbjct: 204 YDFEFMQAIVNIFDIVLDVGVKISVLFVIIGIADFGYQKWKHLHDLRMSKQEVKDEMKQS 263

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R +   R   R +MM+   +A ++ITNPTH+A+A++Y + + +AP ++AKG 
Sbjct: 264 EGDPQVKGRIRQKMREGARRRMMQELPKADVVITNPTHFAVAIKYDKEKAEAPYVLAKGA 323

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A  +++ A EH I I E   LAR L+  V I   IPP  Y+ VA+++  +Y  K
Sbjct: 324 DYVAATIKEAAKEHKIEIVENKPLARMLYYNVEIGEQIPPELYQMVAEVLAYVYSVK 380


>gi|218133682|ref|ZP_03462486.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991057|gb|EEC57063.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC
           43243]
          Length = 386

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 188/362 (51%), Gaps = 20/362 (5%)

Query: 5   DAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTS 60
           D P   KTE P++KK+ DA  EG    S+E      +LA  + + F+       +    S
Sbjct: 22  DGPGGEKTEVPTAKKLNDARKEGQVAKSKEIITALMLLALFVVIKFYIGNLGQQMIECFS 81

Query: 61  DLHVLLA-----SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           + + L       S    ++ D + +V L     L+   +++P + L ++  I    +Q+ 
Sbjct: 82  EFYDLFGKIISNSEYGMRMVDATGVVSLGLTTVLN---MIVPFIALAVVIAILGNALQQK 138

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            ++    ++P   ++S   G+KR++++  L    KS   I ++  +I  ++ +    +  
Sbjct: 139 WMVTTKPLQPKLSKISPISGLKRMFNVKQLFEVGKSVAMIAVMSYVIYTTVKDKLGVLYT 198

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKD 231
           F + +    LY A   V  +++ + + I+     +  +D+ +  H++   +KM+KQE+KD
Sbjct: 199 FYNIS----LYEALEIVGDIIVDLGIKISAVFLVIGFVDLIYQRHKFKEDMKMTKQEVKD 254

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G+P +K + +   +   R +MMEA  +A ++ITNPTH+A+AL+Y   +  APV+
Sbjct: 255 EFKNTEGDPQVKGQIRRRMQQVSRRRMMEALPQADVVITNPTHFAVALKYEANKGQAPVV 314

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG + +A  ++  A E+ I I E   LAR L+  V I + IPP  Y+AVA+++  +Y 
Sbjct: 315 IAKGADYLAFDIKAKAKEYGIEIVENKPLARILYNNVEIGAQIPPELYQAVAEVLAFVYS 374

Query: 352 KK 353
            K
Sbjct: 375 LK 376


>gi|311992333|gb|ADQ26740.1| protein export component [Aeromonas hydrophila]
          Length = 375

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 16/357 (4%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D    +TE P+ K+++ A  +G    S+E    S +LA +  LL        S+   +  
Sbjct: 2   DTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKE----SLAGAMVK 57

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN--- 121
           +L        E       ++T L      L+ P  LLFM+  I +++   + +  +N   
Sbjct: 58  VLTMGFTLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNTL-MGGMNFSS 116

Query: 122 -HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179
             + P + ++S   GIKR++ + +LV  +KS  K++ +       L+  +  +L+  +  
Sbjct: 117 EAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEG 176

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSY 237
            P  I+      +    ++I+L  A + ++ I   + QW    +LKM+KQE+KDE K S 
Sbjct: 177 YPGGIIDALDLLL---WMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSE 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQ 296
           G P +K R + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG 
Sbjct: 234 GKPEVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGT 293

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + IA K+R+IA E+ IP+   P+L R+++    I   IP   + AVAQ++  +Y  K
Sbjct: 294 DEIAMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 350


>gi|237751917|ref|ZP_04582397.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376676|gb|EEO26767.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 354

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 186/351 (52%), Gaps = 14/351 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILA--CLIYLLF-FFSPGIYSVTS 60
           +DA   KTE P+++KIE A  EGN   S + + F  ++    L++L F F+  G+ SV  
Sbjct: 3   DDA--EKTEEPTARKIEKAREEGNVLKSPDVNAFLGLVVGLALVFLCFNFWVRGLGSVFE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            ++   +    R     ++ + +   L      L+ P     M+ G+ + + Q   +L  
Sbjct: 61  QIYQSFSQEFTR-----ANAMSITLSLVFQVLYLLAPIFGALMLIGVIANVSQSGFLLTA 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             ++P  ++++   G+K + S+  L++ F+ +F   +L   II   +   +   L  ++ 
Sbjct: 116 KAIQPKLQKLNFITGMKNLISLKKLLDGFLITFK--VLSAFIIAFFVFLGFMHELTTVAL 173

Query: 180 NPHSILYHAFFTVRKVLIMILL-FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            P       F     +LI ILL F   +  +D     +Q++  L+MSKQE+KDE K   G
Sbjct: 174 FPLGDQMLWFRDKAIILIGILLAFFLVMASVDYMIKRYQYFKSLRMSKQEVKDEFKNQEG 233

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +  +K + +S+     R +MM+    A +++TNPTHYA+ALRY   +  AP ++AKG + 
Sbjct: 234 DQQVKGKIRSLMFQAARKRMMQNIPSADVVVTNPTHYAVALRYDSKKERAPRVLAKGVDF 293

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +A+++++IA EH IPI E P LAR+L+K V ++  IP   Y+A+  ++ ++
Sbjct: 294 LAQRIKEIATEHEIPIIENPPLARALYKDVDLDMEIPESLYQAMVNVLLEV 344


>gi|226313051|ref|YP_002772945.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC
           100599]
 gi|226095999|dbj|BAH44441.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC
           100599]
          Length = 365

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 182/345 (52%), Gaps = 7/345 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +DA  +G    S++ S   S+ A    L+   S  + +    +   L +
Sbjct: 18  EKTEKATPKKKQDARKKGQVAKSQDLSPALSLTAFFFLLMMLGSTMLGTFQDLMRESLIT 77

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            T  +L +  ++  ++  L   A ++V P L L  +       +Q     +   ++   +
Sbjct: 78  YTTWQLNE-ENLKVMVMQLVFEAIKIVGPILGLSFLVAFAVNYMQVGWHFSTEPLQMKLE 136

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKI---ILVGTIITISLTENYFTMLDFISANPHSIL 185
           ++   +G KRI+S+ +LV  +KS +KI   I V  +I  +  E     L  +S    ++L
Sbjct: 137 KIDPIKGAKRIFSLRSLVELLKSLLKISAGIYVAYVILWNAKEQ-VVQLSLLSLG--AVL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 V K+ I + L +  L VLD  +  ++    L+MSKQ++KDE KQ+ G+P+IK +
Sbjct: 194 SFTAEEVTKLGIYLGLLLFILAVLDYAYQRYEHEKNLRMSKQDLKDEHKQAEGDPLIKGK 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   RS    +MM+   +A +IITNPTH+A+A+RY  +   AP ++AKGQ+ +A K+R+
Sbjct: 254 IRERQRSMAIRRMMQELPKADVIITNPTHFAVAVRYDASAMSAPTVIAKGQDYLALKIRE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +A +H I   E   LAR+L+ QV +   IP   +KAVA+++  +Y
Sbjct: 314 VAKKHRIVTMENKPLARALYSQVEVGQQIPEEMFKAVAEVLAYVY 358


>gi|300697969|ref|YP_003748630.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957]
 gi|299074693|emb|CBJ54250.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957]
          Length = 387

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 181/358 (50%), Gaps = 32/358 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S++++E A  EG+ P SRE          + ++L   S G   V  +  V  AS
Sbjct: 8   EKTEPASARRLEQAREEGDVPQSRE---------LVSFVLLAVSAGGLWVMGESIVRAAS 58

Query: 69  A-TQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           A   R LE    D +       ++      L  V+ GL+L ++    + L      ++L 
Sbjct: 59  AFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAISLK 118

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML----DFI 177
            + P   R+    G+KR++S+  L+   +   K+ LVG +        ++ +L    DF+
Sbjct: 119 PLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLALVGGV-------GWWLILHYRDDFV 171

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEI 233
              P   L         V  +  L +A + +L    D+  +  Q+  K +M+K+E++ E 
Sbjct: 172 EL-PRQDLAAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++A
Sbjct: 231 RESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG +++A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y 
Sbjct: 291 KGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQ 348


>gi|302387776|ref|YP_003823598.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum
           WM1]
 gi|302198404|gb|ADL05975.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum
           WM1]
          Length = 353

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 190/349 (54%), Gaps = 7/349 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL--- 62
           A D+KTE  + KK  D   +G+  +S++  + +S+L   + L   F P +Y    +    
Sbjct: 2   AGDSKTEKATPKKRRDERKKGHVAVSKDVVMVASLLGIFMMLKLLF-PFMYKTLRNYMIK 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           ++ LA A +  L D +   ++ T +++   +   P LL  ++  + +  +Q   +   ++
Sbjct: 61  YISLAPAAE-TLSDYTTKAYMDTVIAVL--KACFPILLAAVLLAVIATGVQTRFLFTKSN 117

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P F R++  +GIK I S+ +LV  +KS +KII++  I+   +  +   +   I     
Sbjct: 118 LAPKFDRLNPLQGIKNILSVKSLVELIKSLIKIIILILILYQIIKGDLRAVARTIDMELQ 177

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
               +    + +++I + +    +   D  + +  +  +++MSKQE+K+E KQ+ GNP I
Sbjct: 178 DSAVYVLNAILEMIIKVSIVFLAIAGFDFFYQWWDFERQIRMSKQELKEEYKQTEGNPEI 237

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R ++I R R R +MM+A   A +I+ NPTHYA+ALRY   +++APVLVAKGQ+ +A +
Sbjct: 238 KGRIRNIQRERARSRMMQAVPTADVIVRNPTHYAVALRYNIEKDNAPVLVAKGQDELALR 297

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +  +  E+ + + E   LAR ++    + + IPP +Y  VA+++  +Y 
Sbjct: 298 IVAVGEENGVYVLENKPLARGIYAGTQVGAEIPPEYYGMVAEILVYVYR 346


>gi|207725003|ref|YP_002255400.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2]
 gi|206590230|emb|CAQ37191.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2]
          Length = 387

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 181/358 (50%), Gaps = 32/358 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S++++E A  EG+ P SRE          + ++L   S G   V  +  V  AS
Sbjct: 8   EKTEPASARRLEQAREEGDVPQSRE---------LVSFVLLTVSAGGLWVMGESIVRAAS 58

Query: 69  A-TQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           A   R LE    D +       ++      L  V+ GL+L ++    + L      ++  
Sbjct: 59  AFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAISFK 118

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML----DFI 177
            + P   R+    G+KR++S+  L+   +   K++LVG +        ++ +L    DF+
Sbjct: 119 PLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGV-------GWWLILHYRDDFV 171

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEI 233
              P   L         V  +  L +A + +L    D+  +  Q+  K +M+K+E++ E 
Sbjct: 172 EL-PRQDLVAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++A
Sbjct: 231 RESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG +++A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y 
Sbjct: 291 KGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQ 348


>gi|238755333|ref|ZP_04616676.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473]
 gi|238706469|gb|EEP98843.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473]
 gi|253317686|gb|ACT22775.1| flagellar biosynthesis protein FlhB [Yersinia ruckeri]
          Length = 383

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE P++ K+E A  +G  P SRE +    + A L  L  F      S+   L 
Sbjct: 3   EDSDLEKTEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLSILWVFGE----SIGRQLA 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            ++A   Q     I +   +L  + +      + ++P  +  ++  I   ++      + 
Sbjct: 59  AMIAQGLQFNHGVIGNEKQMLRQVGMLLMQTVKALLPVFIGLVLVAISVPMLLGGIAFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              K   KR++   G+KR++S   L   +K+ +K  LVG +  + L   +  ML  I+A 
Sbjct: 119 ESFKFDLKRMNPISGLKRMFSSQVLAELLKAILKATLVGWVTGMFLWHYWPDMLRLIAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +     +++L +  +   D+ +       KL+M+KQEI+DE K   G+P
Sbjct: 179 PIAALGDALHLILFCGFIVVLGLTPMVGFDVFYQIMSHIKKLRMTKQEIRDEFKDQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPQADVIVTNPTHYAVALQYNENKMSAPKVLAKGAGEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLK 351


>gi|325917832|ref|ZP_08180011.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535943|gb|EGD07760.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC
           35937]
          Length = 376

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 182/354 (51%), Gaps = 7/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+D    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESDDGGERTELPTEKRLREAREQGNFPQSRELST-AAVFGAGVFGLMALAGGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
              V + +A         H + L  H     L    +++P + + ++ G+   L+     
Sbjct: 60  ---VWMKTALSPDPRMREHPMALFGHFGDLLLQLLWVMLPLIGVCLLAGLAGPLMMSGLH 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P   +++   GIKR++  N+L   +KS ++++ VG    + ++++   +   +
Sbjct: 117 FSSKAIMPDLTKLNPMNGIKRMWGSNSLAELVKSVLRLLFVGLAAWLCISKSLPGLRALV 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +      + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S 
Sbjct: 177 NQPLEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG +
Sbjct: 237 GSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVD 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 297 EMAFRIRETCEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|51246526|ref|YP_066410.1| flagellar biosynthesis protein FlhB [Desulfotalea psychrophila
           LSv54]
 gi|50877563|emb|CAG37403.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea
           psychrophila LSv54]
          Length = 355

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 187/361 (51%), Gaps = 22/361 (6%)

Query: 4   NDAP--DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            +AP    +TE  SSK+ ED   +G    S+E    +     L++  F+   GI+     
Sbjct: 3   EEAPTGGERTEDASSKRREDFRKKGQVAQSKEVQTAALFTLLLLFWSFYI--GIFG--RK 58

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSL----SASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           L +L+ S  Q  LE  S        L+L      + ++ P  LL ++ GI S   Q   +
Sbjct: 59  LLILIQSIWQ-SLESFSPTPSQTMQLALFVIKECAIILAPLFLLVVIVGIASSFFQIGWL 117

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                + P F +++   G  R +S  + +  +KS  K+ L+G +   ++ E++   L   
Sbjct: 118 FTTKPLSPDFSKMNPIAGFGRFFSKKSFIEVIKSLSKVTLIGWLAFSTIIEHFNEALVQT 177

Query: 178 SANPHSILYHAFFTVRKVLIM-----ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
             +P + L   F  V   LI+     IL+ +A +  L + W   +   K+KM+KQE K+E
Sbjct: 178 DTSPMATL--VFIGVTASLIVAKVCAILILLAFIDFLYVKWEMEE---KMKMTKQEQKEE 232

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K+S G+P IK++ ++I +   R +MM     A +IITNPTH ++ALRY   ++ AP++V
Sbjct: 233 FKESEGDPHIKSQIRAIQQEMARKRMMADVPGADVIITNPTHISIALRYRAGQDQAPIIV 292

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA E++IPI E P +AR L K + I  ++P   +  VA+++  +Y  
Sbjct: 293 AKGVDFVAMKIREIARENSIPIIENPPVARMLHK-IEIGGSVPEEMFAVVAEILAHVYSL 351

Query: 353 K 353
           K
Sbjct: 352 K 352


>gi|311030112|ref|ZP_07708202.1| flagellar biosynthesis protein FlhB [Bacillus sp. m3-13]
          Length = 362

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 194/350 (55%), Gaps = 17/350 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +D   +G   +++ A + +S +   ++L  F + G +     L +   S
Sbjct: 15  EKTEKATPKKKQDTRKKGQ--VAKSADVNTSFVLIAVFLCLF-AIGPWMKDETLKLFEHS 71

Query: 69  ATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                LE+++    H++FL   L +    ++ P +L  ++  + +  +Q  P+ +   + 
Sbjct: 72  FRVYLLEEVTVQKVHMIFL--ELIMQLIWIIGPIMLAALLGAVIANYLQVGPLFSTEAIH 129

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
               ++   +G KRIYS+  +V  +KS +KI+ VG IIT S+    +  L+ +       
Sbjct: 130 MKLNKLDPIQGFKRIYSVRAIVELVKSMLKIVFVG-IITFSIL---WMSLEEVLILSQKN 185

Query: 185 LYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           L+ AF  +  + + + LF       L++ D  +  + +   ++MSK ++KDE K++ G+P
Sbjct: 186 LHEAFAFLGTLTVRMGLFAGGALLFLSIFDYLYQKYDYEKNIRMSKHDVKDEYKKAEGDP 245

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK++ K   R     +MM+   +A +IITNPTH+A+AL+Y +++ DAP+++AKG + +A
Sbjct: 246 LIKSKIKQKQREMAMQRMMQDVPQADVIITNPTHFAIALKYDESKGDAPIVLAKGVDYVA 305

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           KK+++ A EHNI   E   LARSL+ Q  I  AIP  F++AVA+++  +Y
Sbjct: 306 KKIKEKAKEHNIVTVENKPLARSLYSQAEIGDAIPEEFFQAVAEILAYVY 355


>gi|260768792|ref|ZP_05877726.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|260616822|gb|EEX42007.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
          Length = 372

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 186/350 (53%), Gaps = 13/350 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D    KTE  SS+K++ A  +G    S+E   FSS +  ++ + +F++    S++ 
Sbjct: 1   MSSGD----KTEQASSQKLDKARKQGQIARSKE---FSSAIMLMVCIGYFYANA-DSLSG 52

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIP 116
            L  L   +   T     D  HI+ L+T       ++  P ++  F+   I + L+    
Sbjct: 53  HLMQLFEVSFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFH 112

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             NL+ + P F +++   GIKRI+S   LV F+K+  KI L+  ++   ++ N+  +   
Sbjct: 113 -FNLSLLAPKFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSL 171

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           + A+  + ++ +   V ++L M++L      V+DI +    + +++KM+KQE+K E K+ 
Sbjct: 172 VRASFQTTIHFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQ 231

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P IK+R + I     R    +    A +++ NPTH+A+AL+Y  T+ +AP +VAKG+
Sbjct: 232 EGRPEIKSRIRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGK 291

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           N +A  +R +A +H + +   P + RS++    +N  IP   + AVAQ++
Sbjct: 292 NEVAFYIRTLAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQIL 341


>gi|332981452|ref|YP_004462893.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1
           BON]
 gi|332699130|gb|AEE96071.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1
           BON]
          Length = 361

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 181/354 (51%), Gaps = 15/354 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS---DL 62
           A D KTE P+ K+  +A  +G    S E ++ + +LA  + +   F   +  +T+    +
Sbjct: 11  ADDEKTEQPTPKRRREAREKGQVFKSAEINMVAVLLASFLVIKAIFPSLLQILTAYERQI 70

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG----SYLIQRIPV- 117
           + +  SA      +    +F+ T + +     +    +  +   +      ++    P+ 
Sbjct: 71  YTMAGSADSIYTSENLSTLFINTIIQIGKGLWIFIFGICIIGIAVNIAQVGFVFSAKPLA 130

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           ++L H+ P+        G KRI+S   +   +KS +KI ++G +    +  +    L   
Sbjct: 131 MDLGHLNPA-------AGFKRIFSKRAVNELVKSILKIAIIGYVAYTEIRNDINIFLAMS 183

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                 ++Y     V    I +   +AT+ VLD  +   ++   L+MSKQE+K E K++ 
Sbjct: 184 REGTSVMIYDMVSIVLNAAIKLTAVMATVAVLDYIFQRREYERNLRMSKQEVKQEFKETE 243

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK R + I R     +MM+   +A ++ITNPTH+A+ALRY    + APV++AKG +
Sbjct: 244 GDPQIKARIRQIQRQLAMMRMMQQVPKADVVITNPTHFAVALRYDAETDQAPVILAKGVD 303

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A++++++A +  +PI E   LAR+L+  V I   IPP FY+AVA+++  +Y+
Sbjct: 304 YMAQRIKEVARQSRVPIVENRELARNLYYAVDIGQIIPPQFYEAVAEVLAYVYN 357


>gi|323705428|ref|ZP_08117003.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535330|gb|EGB25106.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 357

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 2/344 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67
            KTE  + K+ +DA  +G    SRE +     +A  + + F     I  + + +  L   
Sbjct: 9   EKTEPATPKRRQDARKKGQVFQSREVTSALVTIAGFLVIYFTVQNSIAEIMNLIKFLFLN 68

Query: 68  -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                  +  I+ I  L   +     +L++P +    +  + S   Q   V  L  +   
Sbjct: 69  YGGASDNVFTINGIYKLFEMVFSVFIKLILPTIATVFIIALISTYAQVGFVFTLETLNFK 128

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +R++  +G+KR++S  +L+  +KS +KI ++  ++   L   Y  +   +  +   ++ 
Sbjct: 129 LERLNPLDGLKRMFSKRSLLELVKSIIKISILAYVMYSFLIGQYKGIPQLLDMSVQDLIK 188

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +       +L+ I L +  L  +D  + + ++ S L+MSK++IK+E K++ GNP IK+  
Sbjct: 189 YNMNIFAGILLRISLVLVVLGAIDYVYQWREYESNLRMSKEDIKEEFKETEGNPQIKSEI 248

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV+VAKGQ+ IA+K+++ 
Sbjct: 249 RKKQRQISMRRMMQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQKIKEE 308

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A +++I I E   LA+SL+K   I  +IPP  YKAVA+++  +Y
Sbjct: 309 AIKYSIAIVENKPLAQSLYKTTEIGDSIPPELYKAVAEVLAYVY 352


>gi|294635599|ref|ZP_06714076.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685]
 gi|291091051|gb|EFE23612.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685]
          Length = 401

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 177/369 (47%), Gaps = 49/369 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+  +IE A  +G  P SRE    +S+L   + L      G Y + S L V++A 
Sbjct: 21  EKTEDPTPHRIEKAREKGQIPRSRE---LTSMLMLAVGLAILLLGGDY-LASSLAVMIAQ 76

Query: 69  ATQRKLEDISHIVFLLTHLSLSASR--LVIPGLLLFMMFG-------------------I 107
                            HL LS  R  L+  G+LL                        I
Sbjct: 77  GLH------------FDHLLLSNDRQMLIQLGMLLRQAVAALLPVLLGLMLVGWCAPMLI 124

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
           G +L       N   +K    R++   G KR++S   L   +K  +K  LVG +    L 
Sbjct: 125 GGFL------FNPGSIKCELNRLNPLTGFKRMFSSQVLAELLKGVLKATLVGCVTGWFLW 178

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKM 224
             +  ML  I+ +    +  A   V    ++++L +  +   D+   ++Q +S   KL+M
Sbjct: 179 HYWPRMLRLITESSLEAMGDALHLVGMCGLLVVLGLLPMVGFDV---FYQLWSNLNKLRM 235

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +KQEIKDE K+  G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + 
Sbjct: 236 TKQEIKDEFKEQEGDPHVKGRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQEN 295

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           +  AP ++AKG   IA++++ +  EH IP  E P LAR+L++   I  AIP   Y AVA+
Sbjct: 296 KMSAPKVLAKGAGNIAQRIKALGMEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAE 355

Query: 345 LIYKIYHKK 353
           ++  +Y  K
Sbjct: 356 VLAWVYQLK 364


>gi|261344152|ref|ZP_05971796.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM
           4541]
 gi|282567746|gb|EFB73281.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM
           4541]
          Length = 383

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 180/360 (50%), Gaps = 35/360 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF----------------FFS 52
            KTE P+  K + A ++G    S+E S    +LA +  L                  F  
Sbjct: 8   EKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLAAQLRQIMRQGFIF 67

Query: 53  PGIYSVTSDLHV-LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
            G Y   + L +  L S     L  +  ++  L  + +SAS LV  G LLF      S L
Sbjct: 68  DGHYLQNTKLMLNYLGSVVSEALFALLPVIGGLALVGISASSLV--GGLLF-----NSKL 120

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
           I+  P           K++   +G+KRI+S+N L    K+ +K + VG    I L +++ 
Sbjct: 121 IKFDP-----------KKLDPIKGLKRIFSMNALSELFKAILKSLFVGLGTWIFLWQSWP 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           ++L  +   P + L +A   V     +I+  +  +   D+ + +     KL+MS+QEIKD
Sbjct: 170 SLLHLVMEPPVTALGNALEKVIFAGYLIVFMLIPMVAFDVFYQFRSHLKKLRMSRQEIKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E KQ  G+P IK + +   R+  R++MM     A +I+TNPTHYA+AL+Y   +  AP +
Sbjct: 230 EFKQQEGDPHIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG  +IA+++++I  E+ I   E P LAR+L++   I  +IP   Y AVA+++  +Y 
Sbjct: 290 LAKGAGVIAQRIKEIGEENRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQ 349


>gi|162210026|ref|YP_331480.2| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           1710b]
          Length = 405

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+EIK E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|76581465|gb|ABA50940.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1710b]
          Length = 470

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 72  EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 131

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 132 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 190

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 191 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 250

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+EIK E +++ G+P +K
Sbjct: 251 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 310

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 311 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 370

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 371 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 420


>gi|254258153|ref|ZP_04949207.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1710a]
 gi|254216842|gb|EET06226.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1710a]
          Length = 401

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D + ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+EIK E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|315452646|ref|YP_004072916.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179]
 gi|315131698|emb|CBY82326.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179]
          Length = 352

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 185/352 (52%), Gaps = 15/352 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE PS+KKIE A  EGN   S E   F  ++A    ++ FFS  +    S   + 
Sbjct: 2   AEEEKTELPSAKKIEKAREEGNVAKSLEVVGFLGLVAGFGGVMAFFSMWLDHFES---IF 58

Query: 66  LASATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             S     L+   H +  L   L    + +++P L L  +    + ++Q   + +   + 
Sbjct: 59  RQSLRWIALDFTPHNLHLLSLQLLKDVAWVLLPFLFLMFVVAFLANVVQFGLLFSPKAIV 118

Query: 125 PSFKRVSLREGIKRIYSINNLVN--FMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           P F +++   G+K ++S+  L++   + + V I  V   + +SL       +  +     
Sbjct: 119 PKFSKINPINGLKNLFSLKKLLDGLLITAKVCIAFVLGFVVVSLFIGELAKIARVEIRDQ 178

Query: 183 SILYHAFFTVRKVLIMI--LLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           ++ +       K LI+I  LLF+  + ++LD      Q+ + LKM+KQE+KDE KQ  GN
Sbjct: 179 ALWFE-----HKALILIASLLFLFLVASLLDFLLKRRQYINSLKMTKQEVKDEYKQQEGN 233

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK + K +       KMM A   A +++TNPTHYA+ALR+ + ++ APV+VAKG   +
Sbjct: 234 PEIKAKIKQLMLKNSMSKMMAAIPSANVVVTNPTHYAVALRF-EEKDVAPVVVAKGIEHL 292

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A +++ IA EH I I E P LAR L+K+V ++  IP + ++AVA +  ++ H
Sbjct: 293 AIRIKAIAREHEIEIIENPKLARELYKEVDVDEVIPKMLFEAVAIVFAQVAH 344


>gi|149377872|ref|ZP_01895601.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter
           algicola DG893]
 gi|149357814|gb|EDM46307.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter
           algicola DG893]
          Length = 378

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 175/366 (47%), Gaps = 33/366 (9%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSV 58
            END    KTE  + +++E A  +G    S+E +  + +LA    LL F       + S+
Sbjct: 3   EENDNSQEKTEEATPRRLEKAREDGQTARSKELATMAVLLAGAGGLLMFGASMGASLESI 62

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSL----SASRLVIPGLLLFMM---------F 105
             D  VL  SA           +F   H+S+    SA    +    L ++          
Sbjct: 63  MRDSFVLERSA-----------IFDTRHMSVQLMASAKEAALSLAPLLILLLVAAVAGSI 111

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
           GIG  L+      +   + P   R+   +G+KR++S+ +L+  +K+ +K+ LV  +  + 
Sbjct: 112 GIGGLLV------SGKAIAPKLNRMDPLKGLKRMFSMRSLIELVKAILKVGLVMAVAILI 165

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           L      +L        S + H  +T+     ++      +  +D+ +       KL+M+
Sbjct: 166 LNLRTDDLLSIAEEPARSAMEHVVWTMAWSFFILACATIVIAAIDVPFQIFDHQKKLRMT 225

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+KDE K + G P +K + + + R   + +MM+    A ++ITNPTHYA+AL+Y Q  
Sbjct: 226 KQEVKDEYKDTEGKPEVKGKIRQLQREMAQRRMMQDVPGADVVITNPTHYAVALKYDQKN 285

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP++VAKG +  A K+ +IA E+ + I   P LAR+++    I   IP   Y A+AQ+
Sbjct: 286 MAAPIVVAKGSDETAFKIMEIARENKVEILRTPPLARAVYHNTDIGGEIPDGLYMAIAQV 345

Query: 346 IYKIYH 351
           +  ++ 
Sbjct: 346 LAYVFQ 351


>gi|167740656|ref|ZP_02413430.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 14]
 gi|167826242|ref|ZP_02457713.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 9]
 gi|167896340|ref|ZP_02483742.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           7894]
 gi|167904714|ref|ZP_02491919.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC
           13177]
 gi|167912992|ref|ZP_02500083.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 112]
 gi|42766716|gb|AAS45441.1| FlhB [Burkholderia pseudomallei]
          Length = 405

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|222100640|ref|YP_002535208.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM
           4359]
 gi|221573030|gb|ACM23842.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM
           4359]
          Length = 315

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 173/307 (56%), Gaps = 14/307 (4%)

Query: 51  FSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF-GIG 108
           F P GI S+  D+   L+      LE+   ++  L +       L+I  L+LF M  GI 
Sbjct: 15  FGPQGIASIARDVSAFLS------LEETEDLLSALGYFK--DILLMIGALMLFTMAAGIL 66

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
              IQ   +L    ++P   R++  EG KR++S+ ++V  +K+ +K++++G ++   L +
Sbjct: 67  VGAIQTRFLLAFKTLRPDLNRINPVEGFKRLFSLRSVVELLKAVMKVVVIGVVVYQVLKD 126

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW-YSK-LKMSK 226
            ++ M+            + +    +V +   + +  L V D  ++Y +W Y K ++M+K
Sbjct: 127 RWYEMVLLSDMELEDAFLNLWDVASEVSLKSGIALLALAVFD--YAYQRWDYEKSIRMTK 184

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE K+  GNP +K RQ+ +    +R +MME   +A ++ITNPTH+A+AL+Y     
Sbjct: 185 QEVKDEFKEVEGNPEVKRRQRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTM 244

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP +VAKG + +A K+ +IA E+ + I   PSLAR+L+ +V I   IP  FY+ VA+++
Sbjct: 245 NAPTVVAKGVDHLALKIIEIARENGVAIVRNPSLARTLYYRVEIGEEIPVEFYRIVAEVL 304

Query: 347 YKIYHKK 353
             +Y +K
Sbjct: 305 VYVYTRK 311


>gi|294500921|ref|YP_003564621.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551]
 gi|294350858|gb|ADE71187.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551]
          Length = 360

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 185/349 (53%), Gaps = 13/349 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +D+  +G    S++ +  ++++  +++L F F  G       +  LL  
Sbjct: 14  EKTEKATPKKKQDSRKKGQVAKSQDVT--TALILLMVFLYFLF--GAKQFLQQMMKLLRE 69

Query: 69  ATQR-KLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           A Q   LE+++   +  +  HL  S +    P +L   +  +G+  +Q   + +   ++P
Sbjct: 70  AFQTYMLEEVTAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQP 129

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             ++++   G KRI+++  LV  +KS +KI+ +G +    L   +  + D ++ +  SI 
Sbjct: 130 KLEKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFIL---WIHIEDVLNLSQKSIG 186

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSYGNPII 242
                  + V  M L     L  L +    +Q +     ++MSKQ+IKDE K   G+P+I
Sbjct: 187 DSLVVLSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLI 246

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K
Sbjct: 247 KSKIKQKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQK 306

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++ IA  H I + E   LAR+LF Q  +  A+P  F+KAVA+++  +Y 
Sbjct: 307 IKGIAKSHEIIMVENRRLARALFDQTKVGDAVPEEFFKAVAEILAYVYR 355


>gi|121533743|ref|ZP_01665570.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans
           Nor1]
 gi|121307734|gb|EAX48649.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans
           Nor1]
          Length = 376

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 193/364 (53%), Gaps = 38/364 (10%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIY---SVTSDLH 63
             KTE  + K+ E+A  +G   +++   L S++  CL+   F     G Y    + S + 
Sbjct: 29  QEKTEEATPKRREEARKKGQ--VAKSVELGSAL--CLLAAFFTIKLTGTYIYEQLASYMQ 84

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L +  T+  +   S   F L  L+L   ++V+P +L+ +   +    +Q     ++  +
Sbjct: 85  FLFSRFTKEDMTIASSYRFFL-DLALIFLKIVLPIMLVILAVSLLVNFMQVGFTFSVEPL 143

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP   R++   G++R++S  +LV  +KS  K+ ++          +YF +  FI     +
Sbjct: 144 KPQLSRINPLAGMQRLFSKRSLVELVKSLFKVAII----------SYF-IYQFIIEETLN 192

Query: 184 ILYHAFFTVRKVLIMI--LLF---------IATLTVLDIGWSYHQWYS---KLKMSKQEI 229
           I   +   +R  L +I  L F         I  L +LD    Y+QW+     LKM+KQE+
Sbjct: 193 IALLSRLALRDSLAVIAALTFDLAFRIGVVILVLAILDY---YYQWWEHNQNLKMTKQEV 249

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E KQ+ GNP IK++ K   R+    +MM+   +A +++TNPTH+A+AL Y +T   AP
Sbjct: 250 KEEFKQTEGNPQIKSKIKERQRALAMRRMMQEVPKADVVVTNPTHFAIALLYEKTMT-AP 308

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +++AKGQ+ +A++++ +A E+ + I E  +LAR+L+  V I   +PP  YKAVA+++  +
Sbjct: 309 MVIAKGQDFMAERIKLVAKENGVAIVENKALARALYDTVEIGETVPPELYKAVAEVLAYV 368

Query: 350 YHKK 353
           Y  K
Sbjct: 369 YRLK 372


>gi|167721674|ref|ZP_02404910.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           DM98]
          Length = 405

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|46581635|ref|YP_012443.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601206|ref|YP_965606.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris DP4]
 gi|46451058|gb|AAS97703.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561435|gb|ABM27179.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris DP4]
 gi|311235277|gb|ADP88131.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris RCH1]
          Length = 357

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 183/350 (52%), Gaps = 10/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D   ++TE  + K++  A N+GN   S+E S   +  A L+ + F    G+  +  
Sbjct: 1   MAQKDP--SRTEQATRKRLNKARNKGNVAKSQEVSKAVTTFAGLVAITFML--GV--LNE 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +      R  +   +   + + L  SA  L I  L + +  G+ +++  R+ V  L
Sbjct: 55  HMQEVFRFFLSRPHDFTPNEQTVYSLLLWSAGELAIMLLPIMLFIGLAAFIAMRLQVGKL 114

Query: 121 ---NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
                 K  + R ++   +KR++ S   L+   KS ++ + +G    I L +    +L  
Sbjct: 115 WTTEVFKLDWSRFNVINALKRMFISPQTLIRLGKSLLQAVFIGIAPIIVLKQEMLNLLPL 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
             A+   I  +   T  +++   L+ +  +  +D+ ++   +   LKM+K E+KDE KQ+
Sbjct: 175 YFADMSGIAVYMLETGARMVKYALVPMVIIAAVDLWYTRWDYNENLKMTKDEVKDERKQA 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P++K++Q+      +  +M++    A ++ITNPTH A+ALRY  T   AP++VA G 
Sbjct: 235 EGDPVVKSQQRQKMMKVMAQRMLKEVPTADVVITNPTHIAVALRYDVTAAPAPIVVAMGA 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + +AK++R++A EHN+PI E   LAR+L+K V +   IP   YKAVA ++
Sbjct: 295 DHLAKRIREVAREHNVPIRENKPLARALYKSVEVGDMIPAELYKAVAAIL 344


>gi|53720905|ref|YP_109891.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           K96243]
 gi|53724312|ref|YP_104358.1| flagellar biosynthesis protein FlhB [Burkholderia mallei ATCC
           23344]
 gi|167817864|ref|ZP_02449544.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 91]
 gi|167847750|ref|ZP_02473258.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           B7210]
 gi|52211319|emb|CAH37308.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           K96243]
 gi|52427735|gb|AAU48328.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
           23344]
          Length = 405

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|91223558|ref|ZP_01258823.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01]
 gi|269965690|ref|ZP_06179803.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B]
 gi|91191644|gb|EAS77908.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01]
 gi|269829758|gb|EEZ83994.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B]
          Length = 376

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 191/362 (52%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  ++S
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL----LFMMFGIGSYLIQ 113
           + S L  L     QR  E+I     L      + S L+ P  L    LF    IG+  + 
Sbjct: 60  IMSRLFDL-----QR--EEIFDTAKLFDIALGAMSDLLFPLFLVLATLFTAAMIGAAGVG 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
            I   +     P   +++   G+KR+  + + V  +KS +K++LV T + I L +     
Sbjct: 113 GIS-FSAQAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLV-TGVAIYLIQASQAD 170

Query: 174 LDFISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           L  +S +  P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KD
Sbjct: 171 LIQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K++ G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + APV+
Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++ 
Sbjct: 290 IAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|317129190|ref|YP_004095472.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM
           2522]
 gi|315474138|gb|ADU30741.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM
           2522]
          Length = 359

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 189/353 (53%), Gaps = 21/353 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +++  +G   +S+ + + +S +   ++L F+   G +SV   + +   S
Sbjct: 13  EKTEKATPKKRKESRQKGQ--VSKSSDVNTSFILLFVFLAFWLM-GSFSVDQLIGITRYS 69

Query: 69  ATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             +  L +++  ++  +  + S+ A+ +V P + + M+  I S  +Q   +     +K  
Sbjct: 70  FQEYLLMELTEANVYSMFINFSIQAAIVVGPFMFIAMLAAIFSNYLQVGILFAPEAIKMK 129

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVG----TIITISLTENYFTMLDFISANPH 182
             ++   +G KRI+S+  LV F+KS +KI+ VG    T+I I++ +    ML   S    
Sbjct: 130 LSKLDPIQGAKRIFSVRALVEFLKSLLKIVCVGFAGFTVIWIAIDD--ILMLSLYSVGES 187

Query: 183 SILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      +  +LIM+ L +A L    +V D  +  +     +KMSKQ++KDE K++ G
Sbjct: 188 VRL------IGNLLIMMGLAVAFLLIFLSVFDYLYQKYDHEKNIKMSKQDVKDEYKKTEG 241

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK++ K   R     +MM    +A ++ITNPTHYA+AL+Y      AP++VAKG + 
Sbjct: 242 DPLIKSKIKEKQRQMAMSRMMAEVPKADVVITNPTHYAIALKYDDQNMAAPIIVAKGVDF 301

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA K+  IA  +N+   E   LAR+L+ Q  I   +P   +KAVA+++  +Y 
Sbjct: 302 IALKVINIAKNNNVMTVENRPLARALYAQADIGDPVPEDLFKAVAEVLAYVYR 354


>gi|126454601|ref|YP_001068145.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           1106a]
 gi|134281603|ref|ZP_01768311.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305]
 gi|167920930|ref|ZP_02508021.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           BCC215]
 gi|217423909|ref|ZP_03455409.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576]
 gi|226193093|ref|ZP_03788703.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814235|ref|YP_002898686.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           MSHR346]
 gi|242317683|ref|ZP_04816699.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1106b]
 gi|254183876|ref|ZP_04890467.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
 gi|254298802|ref|ZP_04966253.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
 gi|126228243|gb|ABN91783.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1106a]
 gi|134247270|gb|EBA47356.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305]
 gi|157808470|gb|EDO85640.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
 gi|184214408|gb|EDU11451.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
 gi|217392972|gb|EEC32994.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576]
 gi|225934693|gb|EEH30670.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506461|gb|ACQ98779.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           MSHR346]
 gi|242140922|gb|EES27324.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1106b]
          Length = 401

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D + ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHAAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|90411036|ref|ZP_01219050.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
 gi|90328249|gb|EAS44560.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
          Length = 376

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 195/361 (54%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  +++K+E A  +G    S+E +  + ++   + L+++   G+    +
Sbjct: 1   MAESDGQE-RTEDATARKLEQAREKGQVARSKELASVAVLVMGAVSLMWY-GEGLGKALA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFMMFG---IGSYLIQRIP 116
           ++   + S ++ ++ D++ +  ++     S   +V P GL+L ++F    IG+  +  + 
Sbjct: 59  EIMTQMFSLSREEIYDLNRLFSIMLTAIWS---VVFPLGLVLIVLFTAALIGAAGLGGVS 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI----SLTENYFT 172
             +     P   +++   G KR++ + + V  +KS +K++LV  +       SL + +  
Sbjct: 116 -FSAEAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVTGVAAYLMYSSLNDFFLL 174

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            L+   +N    ++HA   + + +++I   +  +  +D+ +   Q   +LKM+KQE+KDE
Sbjct: 175 SLEIYPSN----IFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + G P +K R + + R   + +MM    +A +IITNP H+++ALRY    + AP+++
Sbjct: 231 YKDTEGKPEVKGRIRMLQREMAQRRMMADVPQADVIITNPEHFSVALRYDPKLDSAPIVI 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG +  A K+R+IA +HNI I   P LAR+++    +   IP   + AVAQ++  I+  
Sbjct: 291 AKGVDHAALKIREIANKHNIDIVPAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|121601443|ref|YP_994701.1| flagellar biosynthesis protein FlhB [Burkholderia mallei SAVP1]
 gi|124383615|ref|YP_001027675.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC
           10229]
 gi|126450428|ref|YP_001082647.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC
           10247]
 gi|238563575|ref|ZP_00438645.2| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse
           4]
 gi|251767891|ref|ZP_02268743.2| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20]
 gi|254175097|ref|ZP_04881758.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
           10399]
 gi|254186354|ref|ZP_04892871.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194732|ref|ZP_04901163.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13]
 gi|254201433|ref|ZP_04907797.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH]
 gi|254206775|ref|ZP_04913126.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU]
 gi|254357202|ref|ZP_04973476.1| flagellar biosynthetic protein FlhB [Burkholderia mallei
           2002721280]
 gi|121230253|gb|ABM52771.1| flagellar biosynthetic protein FlhB [Burkholderia mallei SAVP1]
 gi|124291635|gb|ABN00904.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC
           10229]
 gi|126243298|gb|ABO06391.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC
           10247]
 gi|147747327|gb|EDK54403.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH]
 gi|147752317|gb|EDK59383.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU]
 gi|148026266|gb|EDK84351.1| flagellar biosynthetic protein FlhB [Burkholderia mallei
           2002721280]
 gi|157934039|gb|EDO89709.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696142|gb|EDP86112.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
           10399]
 gi|169651482|gb|EDS84175.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13]
 gi|238520421|gb|EEP83881.1| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse
           4]
 gi|243061442|gb|EES43628.1| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20]
          Length = 401

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 3   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 63  TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 122 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 182 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 242 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 302 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|310764894|gb|ADP09844.1| Flagellar biosynthetic protein FlhB [Erwinia sp. Ejp617]
          Length = 381

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 186/353 (52%), Gaps = 13/353 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI-YLLFFFSPG--IYSVTS 60
            ++ + KTEAP+  +I  A  EG  P S+E    +++L  L+ + L   S G  + S+ S
Sbjct: 3   QESDNEKTEAPTPSRIAKAREEGQIPRSKE---LTTLLMLLVGWGLMLCSGGNLVRSLQS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  L       L D + ++   + L   A   ++P +   ++  + +  +    +L+ 
Sbjct: 60  LLHNALIFDRLLVL-DPAQMLQRSSSLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL--VGTIITISLTENYFTMLDFIS 178
             + P  K+++   GIKR++S       +K+ +K++L  +G  + + L +  F  L F  
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATIGGGLYLLLNKEKFIRLIF-- 176

Query: 179 ANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             P  + L      +   L+ +++ +  +   D+ +  +  + KL+MS+QEIKDE K+  
Sbjct: 177 -EPLGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK R + + R+  + +MM     A +I+ NPTHY++AL+Y      AP +VAKG  
Sbjct: 236 GDPQIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           L+A ++R++A  H +P+ E P LAR+L++   I + IP   Y AVA+++  +Y
Sbjct: 296 LVALRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVY 348


>gi|78047537|ref|YP_363712.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925983|ref|ZP_08187349.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118]
 gi|78035967|emb|CAJ23658.1| flagellar biosynthesis pathway component FlhB [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543579|gb|EGD14996.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118]
          Length = 376

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 182/352 (51%), Gaps = 3/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMVLARGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            + +  A +   KL +    +F     L L    +++P + + +  G+   L+      +
Sbjct: 60  -VWMKTALSPDPKLRETPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFS 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P   +++   GIKR++  N+L   +KS ++++ VG   +  +++    +   ++ 
Sbjct: 119 GKAIMPDLSKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISKGLHGLRSLVNQ 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+
Sbjct: 179 PLEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGS 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +
Sbjct: 239 PEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEM 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 299 AFRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|126441654|ref|YP_001060838.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668]
 gi|126221147|gb|ABN84653.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 668]
          Length = 401

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 3   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 63  TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALATPMAMGGWLVSTKTF 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 122 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 182 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 242 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 302 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|295706267|ref|YP_003599342.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319]
 gi|294803926|gb|ADF40992.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319]
          Length = 360

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 185/349 (53%), Gaps = 13/349 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK +D+  +G    S++ +  ++++  +++L F F  G       +  LL  
Sbjct: 14  EKTEKATPKKKQDSRKKGQVAKSQDVT--TALILLMVFLYFLF--GAKQFLQQMMKLLRE 69

Query: 69  ATQR-KLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           A Q   LE+++   +  +  HL  S +    P +L   +  +G+  +Q   + +   ++P
Sbjct: 70  AFQTYMLEEVTAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQP 129

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             ++++   G KRI+++  LV  +KS +KI+ +G +    L   +  + D ++ +  SI 
Sbjct: 130 KLEKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFIL---WIHIEDVLNLSQKSIG 186

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSYGNPII 242
                  + V  M L     L  L +    +Q +     ++MSKQ+IKDE K   G+P+I
Sbjct: 187 DSLVVLSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLI 246

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++ K   R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K
Sbjct: 247 KSKIKQKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQK 306

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++ IA  H I + E   LAR+LF Q  +  A+P  F+KAVA+++  +Y 
Sbjct: 307 IKGIAKSHEIIMVENRPLARALFDQTKVGDAVPEEFFKAVAEILAYVYR 355


>gi|167620815|ref|ZP_02389446.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           Bt4]
          Length = 401

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 185/356 (51%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S     +  
Sbjct: 1   MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGE 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  +L +A             +L+H   LSL     ++P L L  +  + + +     +
Sbjct: 56  HLRTMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           ++    +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   
Sbjct: 116 VSTKTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLA 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +   H+ L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ 
Sbjct: 176 TQPLHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG N
Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVN 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 296 LVAARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351


>gi|189426336|ref|YP_001953513.1| flagellar biosynthesis protein FlhB [Geobacter lovleyi SZ]
 gi|189422595|gb|ACD96993.1| flagellar biosynthetic protein FlhB [Geobacter lovleyi SZ]
          Length = 357

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 190/360 (52%), Gaps = 13/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS---PGIYS 57
           M+E+D   +KTE P+ +++E A  +G  P S+  S   ++LA ++ L    S    G+ S
Sbjct: 1   MAEDDDKHSKTEQPTGRRLEKAREKGAPPSSQMLSQSFTLLAGIVVLYLLGSYLMNGLKS 60

Query: 58  VTSDLHVLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
            T  ++  + +   T++ +  +   +F +  +      L+ P +L  M  GI ++++Q  
Sbjct: 61  TTVQVYSQIGTFELTEQNVYTMMLRIFGVLFM------LLAPVILAVMSTGILAHIVQDN 114

Query: 116 PVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
             L+    + +F   +++   G  ++++   LV  +KS +KI ++G I    L +    +
Sbjct: 115 GRLDFQWGRITFDISKLNFISGFGKLFNKEALVEILKSLIKIFVIGWIAYQVLRDELQNI 174

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                ++ + IL +      K++      +  +++LD+ +   ++   LKM+KQE+KDE 
Sbjct: 175 TVLAESDVNGILSYTGHVAFKIVTHTCGIMIVISILDMAYVKWRYIENLKMTKQEVKDET 234

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K   GNP IK + K +     R ++ +    A ++ITNPTH+A+AL+Y ++   AP+++A
Sbjct: 235 KDMEGNPEIKGKIKRLQFQAARRRLTKIIPTADVVITNPTHFAVALKYDRSRMVAPMVIA 294

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A  ++++A EH + + E   LAR L+ QV  N  IP   Y AVA+++  +Y  K
Sbjct: 295 KGADEMALAIKEMAREHKVTLVENRFLARELYDQVAENQEIPESLYAAVAEVLAYVYRLK 354


>gi|167582700|ref|ZP_02375574.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           TXDOH]
          Length = 405

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S     +   L 
Sbjct: 7   EDSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGEHLR 62

Query: 64  VLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L +A             +L+H   LSL     ++P L L  +  + + +     +++ 
Sbjct: 63  TMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 122

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 123 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 182

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 183 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 242

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 243 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 302

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 303 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355


>gi|326791523|ref|YP_004309344.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM
           5427]
 gi|326542287|gb|ADZ84146.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM
           5427]
          Length = 372

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 192/358 (53%), Gaps = 18/358 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64
           + +TE  + KK EDA  +G   +++ A L +++L    C + LL     G Y + S +  
Sbjct: 18  EGRTEKATPKKKEDARKKGQ--VAKSAELNTAVLIVGFCAVSLLL----GGY-MLSGIQT 70

Query: 65  LLASATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV---LN 119
            + ++  R  E  + +   ++L     +   ++   L L++   I  +++  I V   ++
Sbjct: 71  SIITSMNRLSEVFNEVTSNYMLVVFRSAIFDILWICLPLWICLFIIGFIVSYIQVGYKVS 130

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +K  F +++   GIKRI S + +V+ + S  K+I++G I+   +       + F   
Sbjct: 131 FEPMKVKFSKMNPINGIKRIISKDMIVSLILSAAKVIVLGAIVYNIILSKIPIFMRFYEL 190

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               IL     TV ++   +      L VLD  +  ++    +KM+KQEIK+E K + G+
Sbjct: 191 TIEQILNTIAMTVVQIGFFVGGAFLVLAVLDYVYQRYKHADSIKMTKQEIKEEYKNAEGD 250

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK++ K   R     +MM+A   A +IITNPTH+A+A++Y +++  APV+VAKG + +
Sbjct: 251 PQIKSKIKQKMREGSMRRMMQAIPEADVIITNPTHFAIAIKYDESKGTAPVVVAKGVDYV 310

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKKI 354
           A+K+++ A EH+I I E   LAR+L+  V +N  IPP  Y AVA++   IY + HKK+
Sbjct: 311 AQKIKEKAKEHHIEIVENKPLARALYYTVDLNKEIPPELYGAVAEVLAFIYNLQHKKM 368


>gi|296133030|ref|YP_003640277.1| flagellar biosynthetic protein FlhB [Thermincola sp. JR]
 gi|296031608|gb|ADG82376.1| flagellar biosynthetic protein FlhB [Thermincola potens JR]
          Length = 368

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 186/366 (50%), Gaps = 39/366 (10%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFF---------FSPGIYS 57
             KTE  ++KK + A  EG    S E +    +LA  I + LFF         F   IY 
Sbjct: 19  QEKTEKATAKKRQKARQEGQVLKSMEFNSAVVLLATFISIKLFFPYMLEQLSGFFREIYR 78

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +      +L + T  +L   +  V  +T         V+P   + ++ G+ + L+Q   +
Sbjct: 79  MWGSQDFVLNARTSHQLYFSTIKVSFMT---------VLPIAGIAVVSGVAANLLQSGFI 129

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                +KP+   ++   GIKR++ + +LV  +KS VK+ +VG I        +      +
Sbjct: 130 FTTKPLKPNISALNPINGIKRMFGVRSLVELVKSLVKVAIVGYIAYTGYKSEFNKFPQLL 189

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY-HQWYS---KLKMSKQEIKDEI 233
             N   I   + F  R +L M       L +   G+ Y +QW+     LKM+KQE+K+E+
Sbjct: 190 DMN---IRASSLFIGRLILNMAFKIAVCLLIFS-GFDYWYQWWEYERSLKMTKQEVKEEL 245

Query: 234 KQSYGNPIIK------NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           KQ+ G+P +K       +Q S+AR      MM+A  +A ++ITNPTHYA+AL+Y      
Sbjct: 246 KQTEGDPKVKAAIRRKQQQMSVAR------MMQAVPKADVVITNPTHYAVALKYDADTMS 299

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKGQ+ +A++++++A EH + + E   LA++L+  V I  +IP   Y+AVA+++ 
Sbjct: 300 APEVVAKGQDYLAQRIKQVAKEHGVVLVENKPLAQALYNAVEIGESIPAELYQAVAEVLA 359

Query: 348 KIYHKK 353
            +Y  K
Sbjct: 360 FVYKLK 365


>gi|161723151|ref|YP_443664.2| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           E264]
          Length = 405

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S     +   L 
Sbjct: 7   EDSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGEHLR 62

Query: 64  VLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L +A             +L+H   LSL     ++P L L  +  + + +     +++ 
Sbjct: 63  TMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 122

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 123 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 182

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 183 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 242

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 243 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 302

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 303 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355


>gi|294664739|ref|ZP_06730068.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605493|gb|EFF48815.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 376

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 177/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMVLARGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++     +   ++  
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
 gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
          Length = 614

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 189/345 (54%), Gaps = 1/345 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             D KTE  + KK  D+  +G    S++  L  +++A ++ ++      + S+  ++   
Sbjct: 261 GADEKTEEATPKKKSDSRKKGQIARSKDVGLAITMIATVLVVVALSGFIVSSLKDNVVYF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L      ++ + + I  + T +   A+ +++P +L  M+ G+ + L+Q   ++  + +KP
Sbjct: 321 LGDMGSMEVTE-NSIKGINTLIISKAAMVIMPVILPIMIAGVAASLVQSGFLVVKDAIKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           SF +++   G K ++S  +LV  +K+ + I +V  I    + +N+  ++   +    ++ 
Sbjct: 380 SFGKLNPINGFKNMFSKKSLVELIKNLILIAIVIFIAYSYIRDNFDKIMQIGNLYLPTLG 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  + + I + +  + ++D    Y  +   ++M+KQEIK+E KQ  G+P IK++
Sbjct: 440 IEVKSLIVGIFVKICILLVVIAIIDYVVQYMLFQKDIRMTKQEIKEEYKQMEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R   + +MM++   AT++ITNPTH A+A++Y + + +AP +VAKG + IA K+++
Sbjct: 500 IKQRQREMSQRRMMQSVGDATVVITNPTHLAVAIKYEEGKTEAPKVVAKGADTIAIKIKE 559

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            A E  +PI E   LAR +F+ V I+  IP   Y+AVA+++  +Y
Sbjct: 560 KAIESKVPIIENKPLARMIFESVEIDKEIPQDMYQAVAEVLAMVY 604


>gi|315180495|gb|ADT87409.1| flagellar biosynthetic protein [Vibrio furnissii NCTC 11218]
          Length = 372

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 185/350 (52%), Gaps = 13/350 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D    KTE  SS+K++ A  +G    S+E   FSS +  ++ + +F++    S++ 
Sbjct: 1   MSSGD----KTEQASSQKLDKARKQGQIARSKE---FSSAIMLMVCIGYFYANA-DSLSG 52

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIP 116
               L   +   T     D  HI+ L+T       ++  P ++  F+   I + L+    
Sbjct: 53  HFMQLFEVSFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFH 112

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             NL+ + P F +++   GIKRI+S   LV F+K+  KI L+  ++   ++ N+  +   
Sbjct: 113 -FNLSLLAPKFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSL 171

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           + A+  + ++ +   V ++L M++L      V+DI +    + +++KM+KQE+K E K+ 
Sbjct: 172 VRASFQTTIHFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQ 231

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P IK+R + I     R    +    A +++ NPTH+A+AL+Y  T+ +AP +VAKG+
Sbjct: 232 EGRPEIKSRIRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGK 291

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           N +A  +R +A +H + +   P + RS++    +N  IP   + AVAQ++
Sbjct: 292 NEVAFYIRTLAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQIL 341


>gi|21242681|ref|NP_642263.1| flagellar biosynthesis protein FlhB [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108153|gb|AAM36799.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 376

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 177/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMVLARGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++     +   ++  
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|134300232|ref|YP_001113728.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens
           MI-1]
 gi|134052932|gb|ABO50903.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens
           MI-1]
          Length = 354

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 189/351 (53%), Gaps = 6/351 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLLFFFSPGIYSVTSDL 62
           +    KTE  + +++++A  +G  P  + A L  +IL  +  ++ L +    I  + +  
Sbjct: 3   EGSQEKTEQATPRRLQEARRKGQVP--KSADLNGAILLLITGLFALLYKDNLITHMQTYF 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
                +  +++ +D S++V +L    ++   +  P  +L M+  +G  L Q   +     
Sbjct: 61  FTYFNNFVKQQQQD-SYLVQILIDFMINVFVVFTPLFILLMVVALGVNLAQVGFLFAPEA 119

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP   +++   G+K ++S   +   +KS +KI +VG ++  ++      +L    + P 
Sbjct: 120 IKPKLDKLNPINGLKNMFSGRAMFELVKSLLKITIVGWVVYAAVRGEMANLLAIFHSPPR 179

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           ++L        KV++   +    + +LD+ +  + +  +++MSKQE+K+E KQ+ G+P I
Sbjct: 180 TLLNQVLTIALKVILWGAVVYLGIALLDLLYQRYAFQKQMRMSKQEVKEEYKQTEGDPQI 239

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K   +   R  + +   +   +AT+++TNPTHYA+AL+Y Q   DAPV+VAKG + +A++
Sbjct: 240 KGWLRRRQRQLLANLARKEVPQATVVVTNPTHYAVALKYEQP-MDAPVVVAKGTDHMARQ 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +R+IA ++ +P+ E   +AR L+  V I  AIP   ++AVA+++  +Y  K
Sbjct: 299 IREIARKNEVPVIENVEVARFLYANVEIGHAIPMEMFQAVAEILAMVYRMK 349


>gi|254228444|ref|ZP_04921870.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262393601|ref|YP_003285455.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
 gi|151939032|gb|EDN57864.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262337195|gb|ACY50990.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
          Length = 376

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 191/362 (52%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  ++S
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL----LFMMFGIGSYLIQ 113
           + S L  L     QR  E+I     L      + + L+ P  L    LF    IG+  + 
Sbjct: 60  IMSRLFDL-----QR--EEIFDTAKLFDIALGAMTDLLFPLFLVLATLFTAAMIGAAGVG 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
            I   +     P   +++   G+KR+  + + V  +KS +K++LV T + I L +     
Sbjct: 113 GIS-FSAQAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLV-TGVAIYLIQASQAD 170

Query: 174 LDFISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           L  +S +  P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KD
Sbjct: 171 LIQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K++ G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + APV+
Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++ 
Sbjct: 290 IAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|83654182|gb|ABC38245.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis
           E264]
          Length = 459

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S     +   L 
Sbjct: 61  EDSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGEHLR 116

Query: 64  VLLASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L +A             +L+H   LSL     ++P L L  +  + + +     +++ 
Sbjct: 117 TMLHTAFSFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 176

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 177 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 236

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 237 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 296

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 297 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 356

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 357 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 409


>gi|325295424|ref|YP_004281938.1| flagellar biosynthetic protein FlhB [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065872|gb|ADY73879.1| flagellar biosynthetic protein FlhB [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 347

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 188/352 (53%), Gaps = 20/352 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + ++ + A  EG    S++  +  ++L     LL+F+ P  Y     L      
Sbjct: 6   SKTEKATPRRRQKAKEEGQVLKSQDIPIAFTLLITST-LLYFYIPFAYKKLLQLFTFDFR 64

Query: 69  ATQRKLEDISHIVFLLTHLSLSA---SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                    S+ V L  +  +SA   + L++P  L+  + GI S +IQ   + +L  + P
Sbjct: 65  T--------SNNVNLWNNYLVSAKTFALLILPVFLVLFLGGIFSNIIQFGFLFSLKPLLP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITISLTENYFTMLDFISANPH 182
               ++  +G+ R++S+  L    ++ +K+I+   VG      +  ++F+ L FIS N  
Sbjct: 117 KLDNINPIKGLGRLFSLKTLFETFRNTLKLIIALAVGYFSGKYILSDFFS-LSFISLNNQ 175

Query: 183 SILYHAFFTVRKVLIMILLF-IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            IL   +  +   +  +L   IA    L   W Y +    LKMSK+EIK+E KQ  G+P+
Sbjct: 176 IILMLKYTLLLFFIFGLLSLPIAAADFLFRRWEYEE---NLKMSKEEIKEERKQYEGHPL 232

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK+  +   R     +MM    +A ++ITNPTHYA+ALRY + +  AP ++AKG + IA 
Sbjct: 233 IKSAIRRKQREIAMKRMMAEIPKADVVITNPTHYAVALRYERGKMHAPKVIAKGVDNIAL 292

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K++KIA EHNIPI E P LAR L++   I S IP  FY+A+A+++ K+Y KK
Sbjct: 293 KIKKIALEHNIPIEENPYLARVLYESCDIGSFIPEEFYQAIAKILAKVYKKK 344


>gi|301165899|emb|CBW25472.1| flagellar biosynthetic protein [Bacteriovorax marinus SJ]
          Length = 361

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 195/372 (52%), Gaps = 38/372 (10%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYS 57
            END+   KTE PS+ +IE+    G    S+E +    L  S++   + +++     +Y 
Sbjct: 4   DENDSDAEKTEDPSAHRIEEFRKRGEVASSKELTSVLVLAGSLMTLGLSMVY-----MYE 58

Query: 58  VTSDL-----HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
           V S+      H+ +++A   K   ++ IV  L  +SL +   V P  L+ +  G+ + + 
Sbjct: 59  VLSEFIEWLYHLDVSTAYTAK--SMNTIVNKLVTVSLKS---VAPIFLVTLSIGVAANMA 113

Query: 113 QRIPVL---NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
           Q I VL   ++   KP   R++  +GIKR++S+ +LV  +K   K I +  I+   L + 
Sbjct: 114 Q-IGVLFSPDVLEWKPD--RINPLQGIKRLFSMKSLVEAIKGVFKFIFILGIVYFFLKDE 170

Query: 170 YFTM-----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
             T      LDF      S LY   F +R +   I++ +  + + D  +    +  KL M
Sbjct: 171 MHTFGGFFHLDFF----QSFLYGKGFLIR-LGFAIVVGLIVIAIGDFAYQKFSYKKKLMM 225

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +K+E K E KQ  GNP IK R +++ R   + ++M    +A +I+TNPTH ++AL+Y   
Sbjct: 226 TKEEAKQEHKQQDGNPEIKQRIRAVQREMSQRRVMSEVPKADVIVTNPTHISIALKYDPE 285

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
              +P ++AKG +++A K+R+IA  H+IPI E   LAR L+K V     +P   YKAVA+
Sbjct: 286 TMISPEVIAKGADVLALKIREIAKGHDIPIVENVPLARGLYKTVKEGQGVPRNLYKAVAE 345

Query: 345 LI---YKIYHKK 353
           ++   YK+  +K
Sbjct: 346 VLAFTYKLKRQK 357


>gi|83589641|ref|YP_429650.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC
           39073]
 gi|83572555|gb|ABC19107.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC
           39073]
          Length = 374

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 185/344 (53%), Gaps = 4/344 (1%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL-HVLL 66
           + KTE  +  ++++   +G    S + S    +LAC+++L ++     Y   +DL    L
Sbjct: 28  EEKTEEATPHRLQEVRQKGQVARSNDLSTAMVLLACVVFL-YWRRETFYQAMADLITSTL 86

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                ++L D   ++ L + L+L    L+ P L L    G+ +   Q   V +L  + P 
Sbjct: 87  QDGWHQQL-DGGSLMALGSQLALKVGLLLAPLLALAAAVGLAANFAQTGFVFSLEPLLPR 145

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + +   +G++R +S   L+  +KS  K+++V  ++   +   +  +L  +     + L 
Sbjct: 146 LENLDPVKGMQRFFSRRALMELLKSLAKVVVVSLVVWQLVKGQFTQLLLTVDMGLPATLD 205

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V +V +  +     L   D  +   ++   L+M++QE+K+E+KQ  G+P++++R 
Sbjct: 206 LVSRMVYRVGLGTVAVFLALAAADYVFQRREYQKNLRMTRQEVKEEMKQMEGDPLVRSRL 265

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R   RH+MM A   AT++ITNPTH A+ALRY + E  AP +VAKG   IA++++ +
Sbjct: 266 REKQRQLARHRMMHAVPEATVVITNPTHVAVALRY-REEERAPRVVAKGAGSIAERIKAV 324

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A  HN+P+ E P +AR+L++QV +   IP   Y+AVA+++ +IY
Sbjct: 325 ARRHNVPVVENPPVARALYRQVELGQEIPVALYQAVAEILARIY 368


>gi|149908781|ref|ZP_01897441.1| flagellar biosynthetic protein [Moritella sp. PE36]
 gi|149808055|gb|EDM67996.1| flagellar biosynthetic protein [Moritella sp. PE36]
          Length = 375

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 11/353 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + +   KTE P+ KK +DA  EG    S+E +    IL     L +F +P   +  S+L 
Sbjct: 3   DSSTQEKTEEPTQKKRDDAKKEGQIARSKELATAGLILISGSSLTWF-APSFSAFFSELF 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP---VLNL 120
            +    T+    D  ++V +L    ++  +++IP +L+     + ++L+  +P   +  L
Sbjct: 62  TIQMQLTREVTRDPQYMVVMLGEAIINMLKVLIPFILVL---NLTTFLLGIMPGGLIFVL 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +++P   +++   G+KR+ S + ++  +KS +KI L+   +   L+ ++  +       
Sbjct: 119 KNIQPKISKMNPISGLKRMVSKDTIIELIKSILKISLISFTLYKVLSLHWHELAAMAQMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238
             ++L +A + +   + +  +  A L V  I   Y +W    KLKMSKQEIKDE K + G
Sbjct: 179 LLNVLNNAMYIMS--ITLSFMGAALLIVAAIDLPYQKWSMNKKLKMSKQEIKDEHKGAEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK + K I R   + ++  A   A  +I NPTHYA+A++Y    + AP +VAKG + 
Sbjct: 237 SPEIKQKIKQIQRQMSQKRIDSAVPTADFVIVNPTHYAVAVKYDAARSQAPFIVAKGVDT 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A +++KIA  H++ I E P L R+++    ++  IP   Y AVA ++  I  
Sbjct: 297 MALRIKKIAESHDLDIIEAPELTRAIYHSTQVDQEIPAQLYTAVAYILTHIMQ 349


>gi|212634380|ref|YP_002310905.1| flagellar biosynthesis protein FlhB [Shewanella piezotolerans WP3]
 gi|212555864|gb|ACJ28318.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
          Length = 377

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 21/361 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  +S+K++ A ++G    S++    + ++A  + L+    P   S+  
Sbjct: 1   MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLVMT-GP---SIAK 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI----GSYLIQRIP 116
            +H ++ +      ++I     ++   S+  S L  P L   ++  +    G+  +  + 
Sbjct: 57  AMHTIMTNLFTLTRDEIFDTRQMMNIWSMVGSELAAPLLGFILLLAVIAFAGNVALGGMS 116

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK--IILVGTIITISLTENYFTML 174
             +     P   ++S   G+KR++ +  +V   K   K  ++ +   + + +  N   ML
Sbjct: 117 -FSAKACMPKPSKMSPVAGLKRMFGVQAVVELTKGIAKFSVVAITAYVVLKIYLNDILML 175

Query: 175 --DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIK 230
             D +  N    +YHA   V    I ILL  +T  ++ I   Y  W+   +LKM+KQE+K
Sbjct: 176 SQDHLPGN----IYHALDLVS--WIFILLCASTFIIVAIDVPYQIWHHAKQLKMTKQEVK 229

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE K + G P +K R + + +   + +MM     A +I+ NP HYA+A++Y   ++ AP 
Sbjct: 230 DEYKDTEGKPEVKGRIRQLQQEMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAAKSTAPF 289

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG + +A K+R+IA EH++ I   P LAR+++    I+  IP   + AVAQ++  ++
Sbjct: 290 VVAKGVDEVAFKIREIAREHDVAIVTAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVF 349

Query: 351 H 351
            
Sbjct: 350 Q 350


>gi|152980271|ref|YP_001353777.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp.
           Marseille]
 gi|151280348|gb|ABR88758.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp.
           Marseille]
          Length = 402

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 179/356 (50%), Gaps = 27/356 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S +K+E A  +G+ P SRE +  + +L       F+   G   +  +L+ +LA+
Sbjct: 20  EKTEPASPRKLEQAREQGDVPRSRELATCTLLLGA--GAAFWILGG--RMVGELNKMLAA 75

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFG------IGSYLIQRIPVLN 119
                 E    +  LL H + S   L+I   P  L+ ++        IG +L       +
Sbjct: 76  GLSFDREMAFDMELLLAHAAASIIDLLIAFAPAALILIVVALISPALIGGWL------FS 129

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P+F R++  +G+  + S    V   K+  K IL+G I  + +   +  ++  +S 
Sbjct: 130 GKALQPNFGRMNPIKGLGNMVSSRAAVELGKAIAKTILIGWIAWMVMRHEFDAVM-ALSV 188

Query: 180 NPHSILYHAFFTVRKVLIMILLFIAT--LTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQ 235
            P   L      +  +L+   +FIA   + V  I   Y  W    KL MS+Q+++ E K+
Sbjct: 189 EP---LKSGTEHLGHLLVFSFIFIAAGLVIVAAIDAPYQMWQHAKKLMMSRQDVRQESKE 245

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S GNP IK + +   R   R +MM     A +++TNPTHYA+AL+Y +    AP +VAKG
Sbjct: 246 SEGNPEIKAKIRQQQREMARRRMMAEVPTADVVVTNPTHYAVALKYSENGMRAPRVVAKG 305

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A K+R++A E+N+ + E P LAR+LF+   +   IP   Y AVA+++  ++ 
Sbjct: 306 ADEVAAKIRELAMENNVVLLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQ 361


>gi|28899010|ref|NP_798615.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836930|ref|ZP_01989597.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|260365244|ref|ZP_05777801.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|260878794|ref|ZP_05891149.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|260897389|ref|ZP_05905885.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|260899948|ref|ZP_05908343.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|4322010|gb|AAD15913.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus]
 gi|28807229|dbj|BAC60499.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749703|gb|EDM60448.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|308088249|gb|EFO37944.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|308094200|gb|EFO43895.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|308107420|gb|EFO44960.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|308115443|gb|EFO52983.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|328474453|gb|EGF45258.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus 10329]
          Length = 376

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 188/359 (52%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  ++S
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 58  VTSDLHVLLASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           + S L  L         KL DI+     L  ++     L +  + LF+   IG+  +  I
Sbjct: 60  IMSRLFDLKRDEIFDTTKLFDIA-----LGAMTDLLFPLFLILITLFVAATIGAAGVGGI 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +     P   +++   G+KR+  + + V  +KS +K++LV  +    +  +   ++ 
Sbjct: 115 S-FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAMYLIQASQADLIQ 173

Query: 176 F-ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +   P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K
Sbjct: 174 LSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G P +K R + + R   + +MM    +A +I+TNP HY++ALRY Q  + APV++AK
Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRAPVVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 293 GTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|260772335|ref|ZP_05881251.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP
           69.14]
 gi|260611474|gb|EEX36677.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP
           69.14]
          Length = 376

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 183/362 (50%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F    +  +Y+
Sbjct: 1   MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLIIGSVALMWFGEMLASRLYT 59

Query: 58  VTSDLHVLLASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLL--LFMMFGIGSYLIQ 113
                  L         KL DI  I   LTHL      ++I   +  L    G+G     
Sbjct: 60  TMGRFFSLSREEIFDSSKLFDI--IAGTLTHLIFPLLLILITLFVAALIGAAGVGGV--- 114

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYF 171
                +    +P   ++S   G KR++ + +LV   KS +K++LV  +    I  ++N  
Sbjct: 115 ---SFSAEAARPKLSKISPLSGFKRMFGMQSLVELFKSILKVLLVAGVAFYLIDASKNDL 171

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             L  +   P +I +HA   +   +++I   +  +  +D+ +   Q   KLKM+KQEIKD
Sbjct: 172 FQLS-MDVYPQNI-FHALEILLNFILLISCSLLVVVAIDVPFQIWQHAEKLKMTKQEIKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G P +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + AP++
Sbjct: 230 EYKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVALRYKQGTDKAPIV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + +A K+R+IA EH I I   P LAR+L+    +   IP   + AVAQ++  ++ 
Sbjct: 290 VAKGGDFLALKIREIAREHEIMIVAAPPLARALYYTTELEQEIPDGLFVAVAQVLAYVFQ 349

Query: 352 KK 353
            K
Sbjct: 350 IK 351


>gi|332799194|ref|YP_004460693.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1]
 gi|332696929|gb|AEE91386.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1]
          Length = 358

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 142/240 (59%), Gaps = 6/240 (2%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT---ISLTENYFTM 173
           VL+L  V P  +R++  EG KRI+S  +L+  +KS  KI +V  ++    I   + +  M
Sbjct: 118 VLSLEPVSPKLERINPLEGFKRIFSRRSLLELIKSIAKITVVAYVVCTAIIKYKDLFPLM 177

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+    +  S+     F V       LL +   + LD  + ++++ + L MSKQ+IK+E 
Sbjct: 178 LNMNLLDASSLTLSIAFEVGMKAAATLLIV---SALDYFYQWYEYETSLMMSKQDIKEEY 234

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K+  GNP IK+R + + R   R +MM+   +A ++ITNPTHYA+AL Y    + APV++A
Sbjct: 235 KEVEGNPQIKSRIRQMQRQMARTRMMKDVEKADVVITNPTHYAVALAYDAALHSAPVVLA 294

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A+K+++IA + ++PI E  +LA++L+K V I   IP   Y AVA+++  IY  K
Sbjct: 295 KGVDKLAEKIKEIATKEDVPIVENKALAQTLYKTVEIGDIIPESLYNAVAEILAFIYSLK 354


>gi|299822255|ref|ZP_07054141.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601]
 gi|299815784|gb|EFI83022.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601]
          Length = 348

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE P+ ++I+ A  EGN   S+E +   S+L     + FF    I ++ +    L
Sbjct: 2   AKDNKTEKPTPRRIKKAREEGNVAKSKELNNAFSLLIVAGMIFFFGKWWIGNMVTAFKAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L             + F+L        ++++P +++ ++ GI +Y +Q   + +   +KP
Sbjct: 62  LEQPPTLGNASSYSLFFILQF-----GKVLLPVMVMVLVIGILNYAVQVGFLFSAKSIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +       +  T++ F   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSAVAYKGFQSHLQTLISFTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                  +   + + L I  + +LD  +  +++   L+MSKQ+IK+E+K S G P +K R
Sbjct: 177 RQILQLFKNEFLALFLIIVVIGLLDFLYQRYEYKKGLRMSKQDIKEEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +    AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R+
Sbjct: 237 QRSIARGLLQGAITKKMLDATFVVNNPTHISVVMRYDKGKDHAPKLLAKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA    IP+     +AR ++        I    Y AV +++ ++  K+
Sbjct: 297 IAETDGIPMITNRQVARMIYYSTNEEEYIQEDLYAAVIEIMKELMDKE 344


>gi|330808231|ref|YP_004352693.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376339|gb|AEA67689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 378

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 184/356 (51%), Gaps = 11/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K++ ++  +G    S+E +  + +LA    LL +       +  
Sbjct: 1   MAESESGQDKTEDPTEKRLRESREKGETARSKELNTLAVMLAGAGGLLIYGGGLALDLLE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115
            + +  +   +  L   S   +LL    +++ A + V+  LLL  + G   +G +L    
Sbjct: 61  IMRLNFSLPREVLLTPGSMAQYLLHSGKIAILAIQPVLIFLLLAAVIGPISLGGWL---- 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                  + P F R++   G+KR++S + L+  +K+F K +LV  +    L  +   +L 
Sbjct: 117 --FAAGSLAPKFSRMNPAAGLKRMFSTSALMELLKAFGKFLLVLFVALTVLQSDIDDLLR 174

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
                    + H+   V    + I   +  +  +D+    +Q   KL M+KQE++DE K 
Sbjct: 175 IAHEPLEQAIIHSVQLVGWSTLWIACGLILIAAIDVPIQLYQSKQKLMMTKQEVRDEHKD 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G P +K R + + R   + +MM A   A ++ITNPTHYA+AL+Y   + +APVL+AKG
Sbjct: 235 SEGKPEVKQRIRQLQREVSQRRMMAAIPDADVVITNPTHYAVALKYDPEKGNAPVLLAKG 294

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A K+R+IA  + + + E P+LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 295 SDFLALKIREIAVANEVMLLESPALARSIYYSTELDQEIPGGLYLAVAQVLAYVYQ 350


>gi|297617157|ref|YP_003702316.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144994|gb|ADI01751.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 366

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 186/348 (53%), Gaps = 7/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY-LLFFFSPGIYSVTSDLHVLLA 67
            KTE  + ++ +++  +G   + R   L S+++  + + +L F +P  Y +T        
Sbjct: 19  EKTEKATPRRRQESRRKGQ--VFRSVDLNSAVILLVGFAVLHFTTP--YMLTGIQGFFSR 74

Query: 68  SATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             + R L  ++   F  +L    L  +++  P +   ++ G+   L+Q   V     +  
Sbjct: 75  YLSDRALTQLTPATFHVMLLDAILLMAKISFPVIGAVLVAGLLVNLLQVGFVFAGEPLSI 134

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +RV+  EG KRI+S+  L+  +KS  K++L G ++   L +N +    F+   P S++
Sbjct: 135 KPERVNPVEGFKRIFSLRALIELVKSVAKVVLTGWVVYSVLKKNLYLFPRFVDMEPVSMV 194

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++ + I + +  + +LD  + + +    L+MSK+E+K E KQ+ G+P I+++
Sbjct: 195 MSLGNIIFEMAMKIGVVLLVVGLLDYLYQWWEHEKSLRMSKEELKQEYKQTEGDPQIRSK 254

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+   R     +MM    +A ++ITNPTH+A+AL+Y      APV+ AKGQ+ +A ++R+
Sbjct: 255 QRQKQREMAMRRMMAEVPKADVVITNPTHFAVALKYEAEAMTAPVVTAKGQDFLALRIRE 314

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A EH + + E P LAR+++    I   IP   Y+AVA+++  +Y +K
Sbjct: 315 VAMEHQVALVENPFLARTIYYSTEIGDPIPETLYQAVAEVLAFVYRQK 362


>gi|312876517|ref|ZP_07736500.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796728|gb|EFR13074.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A]
          Length = 303

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 163/281 (58%), Gaps = 2/281 (0%)

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           LED+     LL+ +  ++ ++++P  L  M+        Q   ++    +K SF++++  
Sbjct: 16  LEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLITGQSLKMSFQKINPI 75

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-MLDFISANPHSILYHAFFTV 192
           EG KRI+SIN++V  +KS +K++++G     S T+++   +L+    N  +I+  +  + 
Sbjct: 76  EGFKRIFSINSVVELIKSILKVLIIGYT-GYSYTQSFAKKLLEMYGMNVLTIVKFSLDSA 134

Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS 252
             +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ +   R 
Sbjct: 135 INLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRERQRR 194

Query: 253 RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312
               +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA K+++ A +H I
Sbjct: 195 ISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIKHRI 254

Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            I E   LAR+L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 255 EIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 295


>gi|289578415|ref|YP_003477042.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus
           Ab9]
 gi|297544691|ref|YP_003676993.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528128|gb|ADD02480.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus
           Ab9]
 gi|296842466|gb|ADH60982.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 363

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 183/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + L     P +  + +    LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLALNILAIPSLEKMMALTKYLLY 73

Query: 68  --SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     + ++  I  L T++   A  ++IP +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIIPIILLIFVVSLVSTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  EG KRI+S   LV   KS  K++++  I+   L   Y  +   +  +   IL
Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++   LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYEVSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|295696131|ref|YP_003589369.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912]
 gi|295411733|gb|ADG06225.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912]
          Length = 370

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 135/242 (55%), Gaps = 2/242 (0%)

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
            IQ   +       P +KR+S  EG +R++S+ +LV   K  +KI ++G I   SL    
Sbjct: 117 FIQVGGLFAFKAASPQWKRISPVEGFRRLFSLRSLVEGAKMILKIAILGGI-GYSLARQI 175

Query: 171 FTMLDFISA-NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           F     +   +P ++       +  V +   L +  L +LD  +    +  +L+M+KQE+
Sbjct: 176 FESSGSLGGMDPTALAGWTGDQLWNVALEASLALLGLAILDAWYQRVSFERQLRMTKQEV 235

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E K++ GNP IK + +   R+  + +MM+   +AT++ITNPTHYA+ALRY     D P
Sbjct: 236 KEEFKRTEGNPTIKRKIRERQRALAQRRMMQEVPKATVVITNPTHYAVALRYEPDSMDTP 295

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V++AKG +  A ++R+ A  + +P+ E P LAR L   V I  AIP V ++AVA+++  +
Sbjct: 296 VVIAKGADAWAWRIRETARHYGVPVVENPPLARRLHAMVEIGEAIPEVLFQAVAEVLAYV 355

Query: 350 YH 351
           Y 
Sbjct: 356 YR 357


>gi|323341371|ref|ZP_08081615.1| flagellar biosynthesis/type III secretory pathway protein
           [Lactobacillus ruminis ATCC 25644]
 gi|323091248|gb|EFZ33876.1| flagellar biosynthesis/type III secretory pathway protein
           [Lactobacillus ruminis ATCC 25644]
          Length = 355

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 182/355 (51%), Gaps = 26/355 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---------FSP---GI 55
           D KTE P+ K+I D+   G   +++   + +++   +  +LF          FSP     
Sbjct: 5   DGKTEKPTPKRIRDSRKRGE--VAKSPDVVAAVALFVFAMLFVPLCEFSINHFSPYFVNY 62

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
             + ++   ++ S  +   + I  ++F++T           P +L+ ++ GI   ++Q  
Sbjct: 63  LEMLANPDQMIGSLGKIAFQAI-LMIFIMTG----------PFMLIAIVIGIVGNIVQVG 111

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +     +KP FK+++   G+K+++S+  L N  KS VK+I+VG +      E   T+  
Sbjct: 112 LLFTATPLKPDFKKLNPLNGLKQMFSLRALQNLAKSLVKLIIVGYLCYKKYVETIPTLTS 171

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
                   +L       + +   I + +  ++V D  +  +     LKMSKQEIKDE+KQ
Sbjct: 172 LSEVGTGKVLLFMLNICKDLATQIGILLVVVSVFDYAFQRYTHMKSLKMSKQEIKDEMKQ 231

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P +K ++K+  R  IR+ + +    AT+++ NPTH A+A++Y       P ++AKG
Sbjct: 232 MEGDPQVKAQRKAKHREMIRNAVAQVKD-ATVVLANPTHLAIAIKYDAEGAGVPQVLAKG 290

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            + +A ++++ A + N+PI E   LAR+L+ +V     IP  FY+A+A++I  +Y
Sbjct: 291 ADDVAMRIKEEAKKQNVPIIENKPLARALYPKVDAGDFIPVEFYEAIAEVIALVY 345


>gi|163750537|ref|ZP_02157775.1| flagellar biosynthesis protein [Shewanella benthica KT99]
 gi|161329692|gb|EDQ00681.1| flagellar biosynthesis protein [Shewanella benthica KT99]
          Length = 377

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 184/357 (51%), Gaps = 13/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + +++E A  +G    S+E    S++L      L    P I S   
Sbjct: 1   MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGT-SAVLVSAAVGLAMVGPSIASSLV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLF--MMFGIGSYLIQRIP 116
            +   L +  + ++ D + +V +     + A  L  P   L+LF  ++  IG+ L+  I 
Sbjct: 60  TIMTTLFTQDREQIFDTNQMVLVW---GMIARELAFPMASLMLFIALVAFIGNILLGGI- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +     P  ++++  +G+KR++ +  LV   K   K ++V +     L+  +  +L  
Sbjct: 116 TFSTKAFMPKTEKMNPMKGLKRMFGVQALVELTKGIAKFLVVASSAYFILSFFFNEILAL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIK 234
              +  S +YHA   +  V + ILL  +T+ ++ I   +  W    +LKM+KQEIKDE K
Sbjct: 176 SRDHLPSNVYHALDLL--VWMFILLCSSTILIVVIDVPFQIWNHNKQLKMTKQEIKDEYK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G P +K + + + R   + +MM     A +I+ NP HYA+A++Y   ++ AP ++AK
Sbjct: 234 DTEGKPEVKGKIRQMQREVAQRRMMAEVPSADVIVVNPEHYAVAVKYDAMKSTAPYVLAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G + +A K+R+IA EH I I   P LAR+++    I+  IP   + A+AQ++  ++ 
Sbjct: 294 GVDEVAFKIREIAREHEIAIISAPPLARAIYHTTKIDQEIPEGLFTAIAQVLAYVFQ 350


>gi|311086556|gb|ADP66637.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 383

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 137/233 (58%)

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           LN   +  +F +++   G KR++S   +V F K  +K+ +V  I    L  ++  +L  +
Sbjct: 116 LNFRSLTLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLV 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +AN  S L H +  +     +++L +  +   DI W    +Y KLKM++QE+KDE+K+  
Sbjct: 176 NANYVSSLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK R +   ++ +R +M+  T +A +IITNP HY++AL+Y +   +AP ++AKG  
Sbjct: 236 GNPNIKMRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             A K++ +A +HNI I   PSLARSL++   I   IP   YKAVA+++  ++
Sbjct: 296 EAAIKIQNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVW 348


>gi|219681611|ref|YP_002467997.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682168|ref|YP_002468552.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471297|ref|ZP_05635296.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621901|gb|ACL30057.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624454|gb|ACL30609.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085981|gb|ADP66063.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311087137|gb|ADP67217.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087673|gb|ADP67752.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 383

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 137/233 (58%)

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           LN   +  +F +++   G KR++S   +V F K  +K+ +V  I    L  ++  +L  +
Sbjct: 116 LNFRSLTLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLV 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +AN  S L H +  +     +++L +  +   DI W    +Y KLKM++QE+KDE+K+  
Sbjct: 176 NANYVSSLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK R +   ++ +R +M+  T +A +IITNP HY++AL+Y +   +AP ++AKG  
Sbjct: 236 GNPNIKMRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             A K++ +A +HNI I   PSLARSL++   I   IP   YKAVA+++  ++
Sbjct: 296 EAAIKIQNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVW 348


>gi|289666118|ref|ZP_06487699.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 376

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 182/354 (51%), Gaps = 7/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDRAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
              V + +A        ++ + L  H     L    +++P + + +  G+   L+     
Sbjct: 60  ---VWMKTALSPDPTMRANPIALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLH 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++++   +   +
Sbjct: 117 FSSKAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALV 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S      + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S 
Sbjct: 177 SQPLEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG +
Sbjct: 237 GSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVD 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 297 EMAFRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|294625836|ref|ZP_06704452.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599864|gb|EFF43985.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 357

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 167/340 (49%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DAL +G  P+S + +  + +   L   L   S G Y     +  L+ 
Sbjct: 3   EEKTEKPTEKKLRDALRDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FADHMRALMT 58

Query: 68  SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                     D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P
Sbjct: 59  IGFDFPENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I 
Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E+K+S G+P IK
Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  A+P   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335


>gi|329929309|ref|ZP_08283062.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5]
 gi|328936678|gb|EGG33121.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5]
          Length = 365

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 180/355 (50%), Gaps = 21/355 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS----------PGIYSV 58
            KTE  + KK +D   +G    S E S  S +LA    LL F              IY  
Sbjct: 18  EKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYIN 77

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
              ++V   +  Q   E    I+ LL  L +S          +F++  + +YL Q   +L
Sbjct: 78  RLSMNVTKDNVMQLFGEYGVQILLLLAPLFIS----------IFVIALVANYL-QVGFML 126

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               +K  F ++   +G K I+S+ +LV F+KS +K+ ++G ++  +L      +    +
Sbjct: 127 TGETLKMKFSKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLST 186

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             P +I +        +   I + +  L VLD  +  + +   ++MSKQ+IKDE K+  G
Sbjct: 187 MGPDTIFHFVADITMSLGFKIAVGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEG 246

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK + +   R     +MM+    A +IITNPTH+A+A++Y  +  +AP ++AKGQ+ 
Sbjct: 247 DPLIKGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDF 306

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A ++++IA EH I   E   LAR+L+++  I  +IP   ++AVA+++  +Y  K
Sbjct: 307 MALRIKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 361


>gi|225850260|ref|YP_002730494.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
 gi|225645107|gb|ACO03293.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
          Length = 349

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 196/356 (55%), Gaps = 25/356 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + ++ + A  EG    S++  + +S+L   + ++F + P  Y++ ++      S
Sbjct: 6   SKTEKATPRRRQKAREEGQVARSQDIPIAASLLIVAV-MMFAYIPFSYNILTEYFHHTFS 64

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                + D++   F+   + + A  LV+P  L+ +  G+ S ++Q   +L+   + P   
Sbjct: 65  NPFHLIPDLNR-GFIYESVKVLAI-LVLPFFLILLAIGVFSNVVQFGFLLSGKALVPKID 122

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN---PHSIL 185
           R++   G+ RI+S+  L   +++ +K++    +        YF ++  IS +    +  L
Sbjct: 123 RLNPVSGLGRIFSMKTLFELVRNLLKLLFASVV-------AYFLLMKIISESFNMSYLPL 175

Query: 186 YHAFFTVRKVLIMILLFIATLTV--LDIGWSYHQWYSK--LKMSKQEIKDEIKQSYGNP- 240
            H  + + K +IM++L  A +++    I + Y +W  +  +KMSK EIK+E K   GNP 
Sbjct: 176 NHEIYFLFKYIIMLILAFAVISIPIAIIDFIYRKWEHEENIKMSKHEIKEERKMYEGNPH 235

Query: 241 ---IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
               I+ +Q+ IA  R    MM    +A ++ITNP HYA+AL+Y + +  AP ++AKG+N
Sbjct: 236 VKAAIRKKQREIAMMR----MMAELPKADVVITNPEHYAVALKYEKGKMAAPKVIAKGKN 291

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA+K+++IA +++IP+ E+P LARSL+    I   IP   Y A+A+++ KIY +K
Sbjct: 292 HIAQKIKEIAKKYDIPVVEDPPLARSLYSSCEIGDMIPENLYVAIAKILAKIYRRK 347


>gi|166712016|ref|ZP_02243223.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 376

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 179/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDGAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S      E+   +     +L L    +++P + + +  G+   L+      + 
Sbjct: 60  AWMKTALSPDPTMRENPMALFGHFGNLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|261407965|ref|YP_003244206.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
 gi|261284428|gb|ACX66399.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
          Length = 362

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 184/352 (52%), Gaps = 15/352 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY------SVTSDL 62
            KTE  + KK +D   +G    S E S  S +LA    LL F   G Y       + +D+
Sbjct: 15  EKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIF---GGYMRDRTVRLFTDI 71

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LFMMFGIGSYLIQRIPVLNLN 121
           ++   S    K     +++ L     +    L+ P  + +F++  + +YL Q   +L   
Sbjct: 72  YINRLSMNVTK----DNVMELFGEYGVQILLLLAPLFISIFVIALVANYL-QVGFMLTGE 126

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +K  F ++   +G K I+S+ +LV F+KS +K+ ++G ++  +L      +    +  P
Sbjct: 127 TLKMKFSKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGP 186

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            +I +        +   I + +  L VLD  +  + +   ++MSKQ+IKDE K+  G+P+
Sbjct: 187 DTIFHFVADITMSLGFKIAIGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPL 246

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK + +   R     +MM+    A +IITNPTH+A+A++Y  +  +AP ++AKGQ+ +A 
Sbjct: 247 IKGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMAL 306

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++IA EH I   E   LAR+L+++  I  +IP   ++AVA+++  +Y  K
Sbjct: 307 RIKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 358


>gi|220934507|ref|YP_002513406.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995817|gb|ACL72419.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7]
          Length = 384

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 182/355 (51%), Gaps = 4/355 (1%)

Query: 1   MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+END +   K+E P+ K++ +A  +G    SRE +    +LA    +L     G+ S  
Sbjct: 1   MAENDDSSQEKSEQPTPKRLREAREKGQVARSRELNTTLVLLAGAGAMLVLGG-GMLSRI 59

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVL 118
            ++        +  + D S +  +L  L +S S L++ P   + ++  +   +       
Sbjct: 60  QEMVRGSFVLEREAIFDASTMQAMLI-LRISESLLMLLPLFGILLVAAVAGPIAMGGGGF 118

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P + +++   G+KRI+S   L+ F K+  K  L+  I    L     ++L    
Sbjct: 119 SGKAMAPKWNKLNPIAGLKRIFSWQGLMEFGKTLAKFALITAIAGSLLWGLSDSLLGLGY 178

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +    L  A + V    +++   +  + ++D+ +       +L+M+KQ++KDE K++ G
Sbjct: 179 QSLEQGLGRAAWIVGWTFLLLAASLILVALVDVPFQLWNHQKQLRMTKQQVKDEYKETEG 238

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
            P +K+R +       R +MM A  +A +++TNPTHYA+ALRY Q  + AP +VAKG +L
Sbjct: 239 KPEVKSRIRQTQMEIARRRMMAAVPKADVVVTNPTHYAVALRYDQNGSGAPKVVAKGADL 298

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A ++R+ A E  +P+F  P LAR++F    ++  IP   Y AVAQ++  +Y  K
Sbjct: 299 VAAEIRERAREAGVPLFPAPPLARAIFYSTRLDQEIPAGLYVAVAQVLAYVYQLK 353


>gi|254785483|ref|YP_003072912.1| flagellar biosynthesis protein FlhB [Teredinibacter turnerae T7901]
 gi|237686236|gb|ACR13500.1| flagellar biosynthetic protein FlhB [Teredinibacter turnerae T7901]
          Length = 377

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 182/355 (51%), Gaps = 9/355 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  + +++E A  EG  P SRE +  + +LA  I L+ F   G     +
Sbjct: 1   MAEQDSSQEKTEEATPRRLEKAREEGQVPRSRELTTTAVLLAGTISLVLF---GGVMANA 57

Query: 61  DLHVL-LASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVL 118
            L ++ L     R++     ++F     S   + L ++P   + ++  I   +     + 
Sbjct: 58  QLEIMRLNFDLPREVIFDPELMFAQLGASFKEALLSLMPLFAVILVAAIAGPVALGGWLF 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P   R+   +G+ R++S+ +L+  +KS  K+ +V  +  + L++    +L    
Sbjct: 118 SSKALAPKLNRMDPIKGLGRMFSMKSLIELVKSIGKVAIVVGVAFVLLSQMKTALLGLSQ 177

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQS 236
                 + H+      +   +LL  +T+ +  +   +  W    KLKMS+Q+I+DE+K +
Sbjct: 178 EGLEQAIIHSL--TLSLWAAVLLSASTIVIAAMDIPFQIWDHSKKLKMSRQDIRDEMKDT 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K++ + + +   +++MM A   A ++ITNPTHY++ALRY       PV+VAKG 
Sbjct: 236 EGKPEVKSKIRQMQQEMAQNRMMSAVPEADVVITNPTHYSIALRYDPKTMSTPVVVAKGI 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A K+R+IA E+ I   + P LAR+++    +   IP   Y AVAQ++  ++ 
Sbjct: 296 DFVAMKIREIARENKIEFVQAPLLARAIYATTDLEDEIPEGLYVAVAQVLAYVFQ 350


>gi|78045982|ref|YP_362157.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927677|ref|ZP_08188905.1| HrcU protein [Xanthomonas perforans 91-118]
 gi|78034412|emb|CAJ22057.1| HrcU protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541878|gb|EGD13392.1| HrcU protein [Xanthomonas perforans 91-118]
          Length = 357

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 169/340 (49%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y  +  +  L+ 
Sbjct: 3   EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FSDHMRALMT 58

Query: 68  SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                     D + I   L H+ +    L++P L   ++ G+     Q     +L  V P
Sbjct: 59  IGFDFSEHTRDAAAINRALGHIGIQGLLLMLPFLAACLVAGMAGGAFQTGLNASLKPVAP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  + 
Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRALMPMIIGLAYETPLDVA 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS  +W      +MSK E K E+K+S G+P IK
Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQRWLFIRDKRMSKDEQKREVKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +++K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 DKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  AIP   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEPLFETVA 335


>gi|310641562|ref|YP_003946320.1| flagellar biosynthetic protein flhb [Paenibacillus polymyxa SC2]
 gi|309246512|gb|ADO56079.1| Flagellar biosynthetic protein FlhB [Paenibacillus polymyxa SC2]
          Length = 370

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 183/352 (51%), Gaps = 15/352 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE  + KK +DA  +G    S E   A +      CL+    +F      +  D+ V 
Sbjct: 23  EKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIFV- 81

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVI--PGLLLFMMFGIGSYLIQRIPVLNLNHV 123
                 R   +++    LL         L++  P  +  ++ GI +  +Q   +L    +
Sbjct: 82  -----NRLSMEVTPNTTLLMMGEYGVQILIMLAPIFVGAIVIGIAANYMQIGFLLTGEGI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P F ++   +G K I+S+ +LV F+KS +K+ ++G ++   L +    +      +   
Sbjct: 137 TPKFSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKADLPKLAEMSGDQ 196

Query: 184 IL-YHAFFTVRKVL-IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
           +L + A  T+   L I ++LFI  L +LD  +  ++    LKMSKQ+IKDE K+  G+P+
Sbjct: 197 MLSFTASLTMELGLKIGVVLFI--LAILDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPL 254

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK + +   R     +MM+    A +IITNPTH+A+AL+Y  +E +AP ++AKGQ+ +A 
Sbjct: 255 IKGKIRERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVAL 314

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++IA +  +   E   LAR+LF++  I  AIP   ++AVA+++  +Y  K
Sbjct: 315 RIKEIAKQSGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366


>gi|74055047|gb|AAZ95852.1| FlhB [Aeromonas hydrophila]
          Length = 376

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 181/358 (50%), Gaps = 16/358 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    +TE P+ K+++ A  +G    S+E    S +LA  ++ L      +      + 
Sbjct: 2   DDTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAA-VFGLLMVKESLAGAMVKIL 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN-- 121
            +  +  + +  D + +  ++  L      L+ P  LLFM+  I +++   + +  +N  
Sbjct: 61  TIGFTLDRDQAFDPNAMGAMVPAL---LRELLHPLGLLFMLVAIAAFIGNTL-MGGMNFS 116

Query: 122 --HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-IS 178
              + P + ++S   GIKR++ + +LV  +KS  K++ +       L+  +  +L+  + 
Sbjct: 117 SEAMLPKWSKLSPLNGIKRMFGVQSLVELIKSIAKVVFITLFAWWMLSSQFNHLLNLSLE 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQS 236
             P  I+      +    ++I+L  A + ++ I   + QW    +LKM+KQE+KDE K S
Sbjct: 177 GYPGGIIDALDLLL---WMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDS 233

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKG 295
            G P +K R + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG
Sbjct: 234 EGKPEVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGAAPKVVAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + IA K+R+IA E+ IPI   P L R++F    I   IP   + AVAQ++  +Y  K
Sbjct: 294 TDEIAMKIREIAREYEIPIMPSPGLTRAIFHSTEIGHEIPEGLFAAVAQVLAYVYQLK 351


>gi|289670566|ref|ZP_06491641.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 376

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 182/354 (51%), Gaps = 7/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDRAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS---LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
              V + +A        ++ + L  H     L    +++P + + +  G+   L+     
Sbjct: 60  ---VWMKTALSPDPTMRANPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLH 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++++   +   +
Sbjct: 117 FSSKAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALV 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S      + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S 
Sbjct: 177 SQPLEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG +
Sbjct: 237 GSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVD 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y 
Sbjct: 297 EMAFRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQ 350


>gi|92114138|ref|YP_574066.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens
           DSM 3043]
 gi|91797228|gb|ABE59367.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens
           DSM 3043]
          Length = 387

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 178/356 (50%), Gaps = 13/356 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTS 60
            D+ + KTE P+ ++++ A  +G    SRE + F  +LA  +  L+     +Y    V  
Sbjct: 3   EDSDEEKTEDPTPRRLDKAKEDGEVARSRELTTFM-LLAVGVGSLWSLGGHLYDRMGVVM 61

Query: 61  DLHVLLASATQRKLEDISHIVFLL---THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +   L + A       +   V+ L   T L+L    L++  + L     +G +LI     
Sbjct: 62  EQSFLFSRAEAFDTAVLMAHVWTLGQNTLLALLPLFLIVTVVALTAPVMLGGWLI----- 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   ++P   +++  +G KR++S   L    K+  K +LVG +    L  N   +L  +
Sbjct: 117 -SGKALQPQISKLNPLKGFKRMFSSQVLAELGKAVAKSVLVGGVAVAFLWLNRGDLLGLM 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S      L          L + +  +  + ++D+ +    +  KL+M+K EIK E K++ 
Sbjct: 176 SLPLSEALARGMDLAALCLSLCVAMLIVVVLIDVPFQLWSFTKKLRMTKDEIKKEHKETE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R ++  +S  R +MM     A +I+TNPTHYA+AL Y  +  +AP +VAKG +
Sbjct: 236 GDPQVKARMRAQQQSMARRRMMAKVPEADVIVTNPTHYAVALSYEGSYMEAPRVVAKGSD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A ++R++   H +P+ E P LAR+L + V I+  +P   Y AVA+++   Y  K
Sbjct: 296 LVATRIRELGEAHGVPLLEAPPLARALHQHVDIDQEVPATLYTAVAEVLAWAYRLK 351


>gi|260893861|ref|YP_003239958.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4]
 gi|260866002|gb|ACX53108.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4]
          Length = 356

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 194/367 (52%), Gaps = 35/367 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLLFFF-SPGIYS 57
           MS       KTE  + +++E+A  +G   ++R A L S  LACL  +++ +      + +
Sbjct: 1   MSLFGPGQEKTEPATPRRLEEARRKGQ--VARSAEL-SGALACLALVFVCYLLKEQALLT 57

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---------RLVIPGLLLFMMFGIG 108
           +T  +H             +S +   LT  S + +          L+ P  L  ++  IG
Sbjct: 58  LTRGMH-----------HSLSFLTGDLTPASAAVALGFWGRILLELLAPFFLTALVLAIG 106

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
             L Q   V + + + P   R+S+  G+ RI+S+  LV   K+F K+++VG+I    + +
Sbjct: 107 VNLAQVGFVFSPSVLLPKLDRISITRGLGRIFSLQGLVELGKAFFKLVIVGSIAVFVIRQ 166

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
               +   +   P +        + ++ +++ L    L +LD  +  +++  +L M+K E
Sbjct: 167 EIPRLFLLLETPPLAGFTLVAGILLRLGVVVGLAYLALGLLDFFYQRNRYRKELMMTKAE 226

Query: 229 IKDEIKQSYGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +K+E+KQ+ G+P++K     R + ++ +RIR ++     +AT+++TNP H A+AL+Y + 
Sbjct: 227 LKEELKQTEGDPLVKGWIRRRLRQVSLNRIRQEV----PKATVVVTNPLHIAVALKY-EP 281

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
             +AP +VAKG   +A+K+++IA  + +P+ E P +A+ L+++V +   IPP  Y+AVA+
Sbjct: 282 PMNAPKVVAKGAGFLAQKIKEIARANGVPVVENPPVAQFLYRRVEVGQEIPPALYQAVAE 341

Query: 345 LIYKIYH 351
           +I  +Y 
Sbjct: 342 IIALVYR 348


>gi|304404263|ref|ZP_07385925.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus
           YK9]
 gi|304347241|gb|EFM13073.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus
           YK9]
          Length = 369

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 186/348 (53%), Gaps = 7/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE+ + KK ++A  +G    S+E  L  + +   +++ F+     Y   S +  +   
Sbjct: 20  EKTESATPKKRQEAREKGQVAKSQE--LPGAFILLFVFMSFYMIGPYYK--SRILAMFGD 75

Query: 69  ATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +  L     + +++ L T L      ++ P   + ++  +    +Q   +   + +K 
Sbjct: 76  LFEDWLTLDLTMGNVMSLFTQLMYEMLMMLAPIFAIALLVALLGNYVQVGILFTGDPLKM 135

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F ++S  +G K I+++  +V F+K+ +K++++G ++ ++L   +  ++   +     +L
Sbjct: 136 KFSKLSPIQGFKNIFAMRTVVEFIKNILKLVVIGLVVFMTLKSQWGRIIQLDTLPVEYVL 195

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                   K+ I I + +  L + D  +  +++   L+MSKQ+IKDE K++ GNP+IK R
Sbjct: 196 GFTGGIALKLGIEIGVILVVLALGDYFYKKYEYEKGLRMSKQDIKDEFKKTEGNPLIKGR 255

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +IITNPTH+A+AL+Y  ++ +APV++AKG + +A ++R+
Sbjct: 256 IRERQRKMALQRMMQDVPKADVIITNPTHFAVALKYDASKMEAPVVLAKGMDHVALRIRE 315

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A EH +   E   LAR+L+ +  I  +IP   ++AVA+++  +Y  K
Sbjct: 316 TAKEHGVITMENKPLARALYDRSEIGDSIPSDLFQAVAEVLAYVYKLK 363


>gi|15616856|ref|NP_240069.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386798|sp|P57334|FLHB_BUCAI RecName: Full=Flagellar biosynthetic protein flhB
 gi|25322197|pir||C84958 flagellar biosynthetic protein flhB [imported] - Buchnera sp.
           (strain APS)
 gi|10038920|dbj|BAB12955.1| flagellar biosynthetic protein flhB [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 383

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 137/233 (58%)

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           LN   +  +F +++   G KR++S   +V F K  +K+ +V  I    L  ++  +L  +
Sbjct: 116 LNFRSLTLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLV 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +AN  S L H +  +     +++L +  +   DI W    +Y KLKM++QE++DE+K+  
Sbjct: 176 NANYVSSLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMRDELKEKE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK R +   ++ +R +M+  T +A +IITNP HY++AL+Y +   +AP ++AKG  
Sbjct: 236 GNPNIKMRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIG 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             A K++ +A +HNI I   PSLARSL++   I   IP   YKAVA+++  ++
Sbjct: 296 EAAIKIQNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVW 348


>gi|212639548|ref|YP_002316068.1| flagellar biosynthesis protein FlhB [Anoxybacillus flavithermus
           WK1]
 gi|212561028|gb|ACJ34083.1| Flagellar biosynthesis pathway, component FlhB [Anoxybacillus
           flavithermus WK1]
          Length = 360

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 198/358 (55%), Gaps = 27/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SVT-----SD 61
            KTE  + +K ++   +G   +++ A + ++ L  +++L+  FS G++  ++T     S 
Sbjct: 14  EKTEKATPRKRQEVRKKGQ--VAKSADVTAAFLMLIVFLVLSFSSGMWGDAITRLFRQSF 71

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            H      T   ++ I   V LL  L+L    LV P  L  +   + +  +Q   +    
Sbjct: 72  QHYFFMDVTIDSVQLI--FVDLLQQLAL----LVGPIFLAAIAAALFANFVQVGFLFTTE 125

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++    ++   +G KRI+S+  LV  +KS +K++ + +++T S+   +  + D +S + 
Sbjct: 126 PLQMKLSKLDPIQGFKRIFSLRALVELLKSILKVLFI-SVVTFSIL--WMHIDDILSLSH 182

Query: 182 HSILYHAF----FTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            SI   A      T++  L+  + LLF   L++ D  +  + +   ++MSKQ+IKDE K+
Sbjct: 183 KSIGAIAATLGRLTIQMGLVASVALLF---LSLFDYLYQRYDFEKNIRMSKQDIKDEYKK 239

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P+IK+R K   R     +MM+    A ++ITNPTH+A+AL+Y + + DAP++VAKG
Sbjct: 240 TEGDPLIKSRIKQKQREMAMRRMMQEVPEADVVITNPTHFAVALKYDEQQADAPIVVAKG 299

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A+K++ IA ++++ I E   LAR+L+ Q  I   IP  F+KAVA+++  +Y  K
Sbjct: 300 ADYMAQKIKDIAKKNDVMIVENRPLARALYDQTDIGMVIPEAFFKAVAEILAYVYKTK 357


>gi|87307411|ref|ZP_01089556.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM
           3645]
 gi|87290151|gb|EAQ82040.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM
           3645]
          Length = 369

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 187/367 (50%), Gaps = 35/367 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSS-ILACLIYLLFFFSPGIY--- 56
           M+E D  D+K+E P+  + ++A N+G   I++   L S+ +L   + ++ +FS  I+   
Sbjct: 1   MAEQD--DDKSEDPTQHRRDEARNQGQ--ITKSQDLISAGMLVIALGVIMYFSQSIFHFF 56

Query: 57  --------SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108
                   SV   L V    A       +  +  ++T           P LLL  +  I 
Sbjct: 57  GDFTRDKLSVPPPLEVSFGWAINENATAVWRLASVMT-----------PILLLMFVAAIA 105

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
             L+Q   +   + +    KR++   G  R++++ N V F    +K+++V T+  +SL  
Sbjct: 106 LNLMQTGFLFLPDKLSLDIKRINPMSGFGRLFALANFVKFGFGIIKVLIVSTVAAVSLYY 165

Query: 169 NYFTMLDFISANPHSI----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           +  T+L     +   I    L  AF+T  K+   +      L ++D  + + +    LKM
Sbjct: 166 DMPTILGLSELSAGEIASFLLTTAFWTSMKIAAAL----LILALMDYAFQWWKHEQDLKM 221

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +KQE+++E+K   G+P +  R++ +AR    ++M     +A  ++TNPT  A+AL+Y   
Sbjct: 222 TKQEVREEMKSLQGDPSLIARRRQVARQLAMNRMSTDVPKADFVVTNPTELAIALKYDPY 281

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           +  AP++VAKG  L+A+++R++A E NIPI E   LAR+L++   I+ AIP   Y AVA+
Sbjct: 282 KMAAPIVVAKGAGLVAQRIRRLALESNIPIVERKELARALYRDAEIDQAIPAEQYAAVAE 341

Query: 345 LIYKIYH 351
           ++  +Y 
Sbjct: 342 VLRYVYE 348


>gi|146296299|ref|YP_001180070.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409875|gb|ABP66879.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 366

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 190/346 (54%), Gaps = 3/346 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + +K ++A   G    SRE +   ++L  +++L F +S  ++ + S       +
Sbjct: 15  TKTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLFVHPLQSYGKYFFGN 74

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                +EDI+    L + +     +LV+P  ++ M         Q   ++    +K SF+
Sbjct: 75  LNY-NIEDIADASRLFSAIITITLKLVLPFCIVIMFMTALVEWAQSGFLITSESLKVSFQ 133

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+SIN++V  +KS +KI+++G    +S       +L+    +  SI+  +
Sbjct: 134 KINPIEGFKRIFSINSVVELIKSILKILIIGYTGYLSTKTFAGKLLEMYDMSLISIVKFS 193

Query: 189 F-FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           F  T+  +L M ++F   + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK+R +
Sbjct: 194 FDSTINLILWMSIMFFG-IAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIR 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA+K+++ A
Sbjct: 253 ERQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKEEA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ I I E   LA+SL+    +   IPP  Y AVA+++  +Y  K
Sbjct: 313 KKYKIEIVENKELAQSLYNMCEVGDFIPPELYHAVAEVLAYVYSLK 358


>gi|308068671|ref|YP_003870276.1| flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681]
 gi|305857950|gb|ADM69738.1| Flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681]
          Length = 370

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 13/351 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE  + KK +DA  +G    S E   A +      CL+    +F      +  D+ V 
Sbjct: 23  EKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIFV- 81

Query: 66  LASATQRKLEDISHIVFLL-THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                +  +E   +   L+     +    ++ P  +  ++ GI +  +Q   +L    + 
Sbjct: 82  ----NRLSMEVTPNTTMLMMGEYGVQILIMLAPIFIGAIVIGIVANYMQIGFLLTGEGIT 137

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F ++   +G K I+S+ +LV F+KS +K+ ++G ++   L +    +      +   +
Sbjct: 138 PKFSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKTDLPKLAEMSGDQM 197

Query: 185 L-YHAFFTVRKVL-IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           L + A  T+   L I ++LF+  L VLD  +  ++    LKMSKQ+IKDE K+  G+P+I
Sbjct: 198 LSFTASLTMELGLKIGVVLFV--LAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLI 255

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + +   R     +MM+    A +IITNPTH+A+AL+Y  +E +AP ++AKGQ+ +A +
Sbjct: 256 KGKIRERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALR 315

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA ++ +   E   LAR+LF++  I  AIP   ++AVA+++  +Y  K
Sbjct: 316 IKEIAKQNGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366


>gi|300722693|ref|YP_003711983.1| putative flagellar export protein [Xenorhabdus nematophila ATCC
           19061]
 gi|297629200|emb|CBJ89797.1| putative part of export apparatus for flagellar proteins
           [Xenorhabdus nematophila ATCC 19061]
          Length = 339

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 125/219 (57%)

Query: 135 GIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
           G+K+I+S+N L    K+ +K  LVG    + +  N+  ML+ I+  P   L  A   +  
Sbjct: 89  GLKKIFSMNALAELFKAILKASLVGGGAALFIWLNWPAMLNLIAQPPLMALNDAVLMMIF 148

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
              +IL  +  +   D+ +       KL+M++QEIKDE K+  G+P +K R +   R+  
Sbjct: 149 ASYIILFMLIPMVAFDVLYQIRSHLKKLRMTRQEIKDEFKEQEGDPHVKARIRQQQRAAA 208

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG  LIA +++++  E+ IP+
Sbjct: 209 RKRMMADVPKADVIVTNPTHYAVALQYDSKKMSAPKVLAKGAGLIALRIKEMGAENRIPL 268

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 269 LEAPPLARALFRYAEVGGFIPAALYAAVAEVLAWVYQLK 307


>gi|84624133|ref|YP_451505.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|161898983|ref|YP_201256.2| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|6969591|gb|AAF33828.1|AF226282_2 flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae]
 gi|84368073|dbj|BAE69231.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 376

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDGAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S      E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  AWMKTALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQ 350


>gi|188576802|ref|YP_001913731.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576995|ref|YP_001913924.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521254|gb|ACD59199.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521447|gb|ACD59392.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 376

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 178/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  +++    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELST-AAVFGAGVFALMALARGIGDGAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S      E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  AWMETALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y 
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQ 350


>gi|322421718|ref|YP_004200941.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18]
 gi|320128105|gb|ADW15665.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18]
          Length = 352

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 189/361 (52%), Gaps = 23/361 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D   +KTE P+SKKI DA ++GN   SRE +   +++  +I L  + S GI        
Sbjct: 2   SDDKHSKTEKPTSKKISDAKSKGNVARSREMTSAVTLITAMIAL--YASSGI-------- 51

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-----GLLL--FMMFGIGSYLIQRIP 116
             +    Q  ++DI   +  +         L+I      G++L  F++ GI S L   I 
Sbjct: 52  --MLKTLQGTMKDIFGGLASIEITPGGVHHLMIKEFANLGIMLTPFLLVGIISGLAVEIS 109

Query: 117 VLNLN----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
              +N     +K    R++  +G+ R+++ +++   +KSF+K+ +VG +    L E    
Sbjct: 110 QGGINLSSEKLKFDLGRLNPVQGMGRLFNKDSVFQVVKSFIKMGIVGYMAYKILAEEMEG 169

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           ++  +  +   IL        K+++     +  L VLD+ +   ++   LKM+KQE+KDE
Sbjct: 170 IIFLVDQDLLGILQFIGHISFKIVLHTCGVLIILAVLDLAFVKWRFLDNLKMTKQEVKDE 229

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + G+P IK +Q+  A    R +M +    A +++TNPTHYA+AL+Y + +  APV++
Sbjct: 230 HKNTEGDPAIKGKQRQKAFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVL 289

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            KG + +A +++ +A E+N+ + E   LAR L+ QV   S IP   + AVA+++  +Y  
Sbjct: 290 FKGVDQMALQIKIVARENNVTLVENRFLARELYAQVEEGSEIPEGLFAAVAEILAYVYSL 349

Query: 353 K 353
           K
Sbjct: 350 K 350


>gi|257095372|ref|YP_003169013.1| flagellar biosynthesis protein FlhB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047896|gb|ACV37084.1| flagellar biosynthetic protein FlhB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 379

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 172/356 (48%), Gaps = 28/356 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            +TE  S++++E A  EG  P SRE   F  IL       +F  P +          +A+
Sbjct: 8   ERTEPASARRLERAREEGQVPRSREVGAFL-ILIVAAAAFWFIGPWMVQ-------RMAA 59

Query: 69  ATQRKL-------EDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQRI 115
             +R L        +   ++  L  LS  A   V P  +  ++      F +GS+     
Sbjct: 60  VFRRGLAFDHGLTREPQLVLVRLADLSADALLSVAPLFVALLVAALLSPFFVGSW----- 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +   ++P   R+   +G+ R+ S + L   +K+  K +LVG +    L      +L 
Sbjct: 115 -NFSAKALQPDLSRLDPLKGLSRLVSWSGLAELVKAVAKALLVGGVAVGVLWSERGDLLA 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             + +    L  A   +    + I+  +  +  +D+ +   Q++ KLKMS+QE+K E K+
Sbjct: 174 MFAQSGQLGLVSAGHLLSFSFLAIVSAMLLIVAIDVPFQLWQYHDKLKMSRQEVKQESKE 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             GNP IK R + + R   R +MM A   A +I+TNPTHYA+AL Y  +   AP ++AKG
Sbjct: 234 LEGNPEIKGRIRQLQREAARKRMMAAVPAADVIVTNPTHYAVALAY-SSGMRAPKVLAKG 292

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
              +A K+R++  E+ IP+ E   LAR+L + V ++  IP   Y AVA+++  +Y 
Sbjct: 293 MGEVALKIRQVGAENGIPMIEAAPLARALHRHVELDREIPAGLYAAVAEVLAYVYQ 348


>gi|33596846|ref|NP_884489.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33600620|ref|NP_888180.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568219|emb|CAE32132.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33573547|emb|CAE37538.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 349

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 181/349 (51%), Gaps = 19/349 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67
            KTE P+ K++ D+  +G    SR+     + L C ++  F   +P I +    L  +LA
Sbjct: 4   EKTEQPTPKRLRDSREKGEVAHSRD--FTQTALICALFGHFLINAPSILASLRAL--ILA 59

Query: 68  SATQRKLEDISHIVFL---LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            A      D +  V L   LT +   A R++ P +L+ +  G+ +  +Q   VL    +K
Sbjct: 60  PAA---FADQAFAVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLK 116

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PS ++++    +K I+S  NL+ F+KS  KI+ +  ++T+ + ++    L  + A PHS 
Sbjct: 117 PSAEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDS----LQPLMAVPHSG 172

Query: 185 LYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           L      V ++L +++    L    +++ D+ W  +Q+   L+MSK E+K E K+  G+P
Sbjct: 173 LDGLRTGVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK ++K + +  I H       RAT+++TNPTH A+AL Y   E   P ++A GQ  +A
Sbjct: 233 HIKQQRKHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             M + A +  +P+ +  +LAR+L  Q  ++  IP    + VA ++  +
Sbjct: 293 ALMVEAARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAV 341


>gi|225849160|ref|YP_002729324.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644259|gb|ACN99309.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 352

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 194/360 (53%), Gaps = 32/360 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFFFS--PGIYSVT-SD 61
            KTE  + K+ + A  EG    S +     SLF   L  + Y+ F +    G +  T S+
Sbjct: 6   RKTEKATPKRRQKAREEGQVLKSTDVAVALSLFVVFLVMIFYIPFLYKYLLGYFKYTFSN 65

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
              L+   + +     + I F    L++    L++P + +  + GI + + Q   +  L 
Sbjct: 66  PFYLIPEESGK-----NFIWFTFKVLAI----LILPFVSILFIVGIVANVAQFGFLFTLK 116

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT---MLD--- 175
            + P   +++   G++R++S++ L   +KS +K+       +++L  +YF    +LD   
Sbjct: 117 PLTPKLSKINPISGLQRLFSLSTLFELVKSILKL-------SLALFVSYFLVSYLLDGFL 169

Query: 176 -FISANPHSILYHAFFTVRKVLIMILLFIAT-LTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
            +++AN +S +Y    T+  +LIM   F++  + + D  +  +++   LKM+K E+K+E 
Sbjct: 170 VYMTANINSQIYILAKTII-ILIMAFTFLSIPIAIADFFYRRYEYEENLKMTKDEVKEER 228

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K   GNPI+K   +   R     +M+    +A ++ITNP HYA+AL+Y + +  AP ++A
Sbjct: 229 KSYEGNPIVKKEIRKRMRQLALKRMIAEVPKADVVITNPDHYAVALKYEKGKMKAPQVIA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KGQ+LIA K++++A EHN+ I E+P LARSL+    +   IP  FY+AVA+++  IY +K
Sbjct: 289 KGQDLIALKIKEVAKEHNVKIVEDPPLARSLYSSCEVGDYIPEDFYEAVAKILAVIYKQK 348


>gi|313905147|ref|ZP_07838516.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6]
 gi|313470050|gb|EFR65383.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6]
          Length = 354

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 185/358 (51%), Gaps = 22/358 (6%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP---GIYSVTSDL 62
           A D+KTE P+ K+  +A  EGN   S++    + +LA  + L    +     I S+  ++
Sbjct: 2   ANDDKTEQPTEKRKREAREEGNVFHSKDIVTVAVLLAGTMILRLRITDIQTTIKSMFFEV 61

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLL-FMMFGIGSYLIQRIPVLNL 120
             L+  +TQ  L    H   L+   +L A+   +P GL   F+ F  G    +     N 
Sbjct: 62  LNLMKGSTQNMLS--RH---LMVSFALDAAVCALPIGLAAAFIEFVAGGAQTR----FNF 112

Query: 121 --NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF---TMLD 175
               +KP  KR++   G+KR++S+  +V  +K+  K +++   + + L ++      M+D
Sbjct: 113 AKKALKPQAKRMNPLNGLKRMFSLKGVVEALKNIAKTVVLVVFVYLILKDDIVPIAKMID 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
              +  +S L+   F +   ++ I L  + +   D  +  HQ+   L M+KQE+KDE K 
Sbjct: 173 EPISQANSQLFSMMFNL---VLRICLAFSVIAAFDFMFQKHQYKKSLMMTKQEVKDEYKN 229

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + GNP IK R K   R   + +M++    A +II NPTH A+A++Y     +APV++AKG
Sbjct: 230 TEGNPEIKGRIKKKQREIAQRRMIQQVPSADVIIRNPTHVAVAIKYDPERAEAPVVLAKG 289

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A ++ ++  E+ +P  E   LAR+L+    +N  IP  +Y AVA+L+  IY ++
Sbjct: 290 VDSVALRIIEVGEENGVPWIENKPLARALYGACELNDQIPSEYYGAVAELLVYIYKQQ 347


>gi|51894124|ref|YP_076815.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857813|dbj|BAD41971.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 361

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 183/346 (52%), Gaps = 6/346 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            +TE P+ ++++ A  EG   ++R   L +  L  +   L     G YSV      ++ +
Sbjct: 8   ERTEEPTPRRLQKAREEGR--VARSTDLVAG-LGLVAATLALRGLGGYSVQQVTGGMVGA 64

Query: 69  -ATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             T R LE        ++   +L   R V+P  L+ +  G+ +  +Q   +  L  + P 
Sbjct: 65  FETLRPLELTPETTAAVMQDWALIGLRAVLPIALVVVAIGVVAGTLQTRFIFTLRALVPR 124

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+ RI+S+  +   +K  +K+  +G I   S+        + I+    + L 
Sbjct: 125 FATLNPITGLTRIFSLRTVTELVKGLIKLAAIGYIAYRSVRGLVPQFPNLIAQTVPAGLS 184

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V  V++ + L    + VLD G+ Y ++   ++M+KQE+K E ++  G P +K+RQ
Sbjct: 185 AIADMVLDVMLAVGLAYLVVGVLDYGYQYWEFRRSMRMTKQEVKQEHREQEGAPELKSRQ 244

Query: 247 KSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +   R   +R + ++    A +++TNPTH+A+AL+Y   +++AP +VAKG +L+A +++K
Sbjct: 245 RQRMRELAMRRRALKEVPGADVVVTNPTHFAVALKYEAAKDEAPRVVAKGADLLALEIQK 304

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA  H++P+ E  +LAR L+  V +   IPP +Y+AVA+++  +Y+
Sbjct: 305 IARAHDVPLVENRTLARGLYYDVEVGRLIPPEYYQAVAEVLAFVYN 350


>gi|33593237|ref|NP_880881.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603237|emb|CAC79582.1| bscU [Bordetella pertussis Tohama I]
 gi|33563612|emb|CAE42513.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382646|gb|AEE67493.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 349

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 180/349 (51%), Gaps = 19/349 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67
            KTE P+ K++ D+  +G    SR+     + L C ++  F   +P I +    L  +LA
Sbjct: 4   EKTERPTPKRLRDSREKGEVAHSRD--FTQTALICALFGHFLINAPSILASLRAL--ILA 59

Query: 68  SATQRKLEDISHIVFL---LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            A      D    V L   LT +   A R++ P +L+ +  G+ +  +Q   VL    +K
Sbjct: 60  PAA---FADQGFAVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLK 116

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PS ++++    +K I+S  NL+ F+KS  KI+ +  ++T+ + ++    L  + A PHS 
Sbjct: 117 PSAEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDS----LQPLMAVPHSG 172

Query: 185 LYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           L      V ++L +++    L    +++ D+ W  +Q+   L+MSK E+K E K+  G+P
Sbjct: 173 LDGLRTGVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK ++K + +  I H       RAT+++TNPTH A+AL Y   E   P ++A GQ  +A
Sbjct: 233 HIKQQRKHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             M + A +  +P+ +  +LAR+L  Q  ++  IP    + VA ++  +
Sbjct: 293 ALMVEAARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAV 341


>gi|327394193|dbj|BAK11615.1| flagellar biosynthetic protein FlhB [Pantoea ananatis AJ13355]
          Length = 346

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 134/235 (57%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V++   +K  F +++   G+KR+++        K  +K ILVG +    +  ++  ML  
Sbjct: 78  VISGKSIKVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVGCVAGWYVWSHWPDMLRL 137

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           I+ +P + L H    +     +++L +  +   D+ W  +  + KL+MS+QEI+DE KQ 
Sbjct: 138 IAESPTTALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHFKKLRMSRQEIRDEHKQQ 197

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP ++AKG 
Sbjct: 198 EGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIAKGA 257

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             IA ++R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++ 
Sbjct: 258 GDIALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYGAVAEVLAWVWQ 312


>gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-63q42]
          Length = 516

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 185/345 (53%), Gaps = 1/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + KK  +   +GN   SRE  +  ++LA  + +   FS  + ++ S L+  L+ 
Sbjct: 165 DKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 224

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                + + S++  L+    +   ++ +P  + F++ GI + L Q   +     +KP+  
Sbjct: 225 DFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKPNLS 283

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++Y  
Sbjct: 284 KLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 343

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P +K + K 
Sbjct: 344 KDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAKIKQ 403

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA 
Sbjct: 404 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 463

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 464 GNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 508


>gi|167564493|ref|ZP_02357409.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           EO147]
          Length = 400

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 183/368 (49%), Gaps = 32/368 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI----- 55
           M+E D+   +TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S  I     
Sbjct: 1   MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWLLSGPISEHLR 58

Query: 56  ----------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
                      +   D H +L+ A    LE +  +  LL    ++A  L  P        
Sbjct: 59  TMLHAAFSFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAA--LAAP-------M 109

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
            +G +L+      +    +  F+R++   G+ RI+SI   +    S  K ++VG I   +
Sbjct: 110 ALGGWLV------STKTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAA 163

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +  +   +L   +   H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+
Sbjct: 164 IWRSKDELLGLATQPLHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMT 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E+K E +++ G+P +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E
Sbjct: 224 KEEVKREHRENEGDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGE 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG NL+A ++R +A EH++P+ E P LAR+L+  V +   IP   Y AVA++
Sbjct: 284 MRAPKVVAKGVNLVAGRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEV 343

Query: 346 IYKIYHKK 353
           +  +Y  K
Sbjct: 344 LAWVYQMK 351


>gi|225375342|ref|ZP_03752563.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM
           16841]
 gi|225212831|gb|EEG95185.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM
           16841]
          Length = 367

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 193/362 (53%), Gaps = 24/362 (6%)

Query: 5   DAPDN-KTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLF--FFSPGIYSVTS 60
           D P   KTE  ++KK+ +A  +G    S+E  + F  I+  L+  +F  F    + +   
Sbjct: 11  DGPGGEKTEPATAKKLREAREDGKVVKSKELTAAFDLIILFLVLKIFVSFVGNRLMNSFV 70

Query: 61  DLHVLLASATQRKLEDISH--IVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPV 117
           D++  +    +    D++   +  L++   +    + +P    F  FG + + LI  I V
Sbjct: 71  DIYGRIPDIVRENAVDVTEKSVAALMSDALIQILIVCVP----FFAFGFVVTALISVIQV 126

Query: 118 ---LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYF 171
              +    ++P F + +   G KRI+S +++   +KS +KI ++  +   S+    ++ F
Sbjct: 127 GWKVTGKPLQPKFDKFNPINGFKRIFSKDSIFELVKSILKIFVIVYVAYTSIRGHAQDIF 186

Query: 172 TMLDFISANP--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
            + +     P   +I+      +   L + L+++  + + D  +  +++   +KM+KQE+
Sbjct: 187 ILYEI----PLMQAIMLCGTVIINAGLKISLVYL-VIGLADFIYQKYRFNEDMKMTKQEV 241

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           KDE K + GNP IK RQ+   R   R +MM+   +A ++ITNPTH+A+A++Y    + AP
Sbjct: 242 KDEFKNTEGNPEIKGRQRQRMREASRRRMMQDVPKADVVITNPTHFAVAIKYDAETSKAP 301

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V++AKG++ +A+K+++ A EH+I I E   LAR L+  V I   IPP  Y+AVA+++  +
Sbjct: 302 VVLAKGEDYLAQKIKEAAREHHIEIVENKPLARMLYANVDIGQEIPPELYQAVAEILAMV 361

Query: 350 YH 351
           Y+
Sbjct: 362 YN 363


>gi|163781850|ref|ZP_02176850.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883070|gb|EDP76574.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 153/270 (56%), Gaps = 12/270 (4%)

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
           S  +L++P  ++ ++  IG+++ Q   +  L  ++  ++R++  EGIK++ SI  L    
Sbjct: 83  SIVKLLVPFFVVTILVVIGAHVAQFGFIFTLKPLQFKWERLNPVEGIKKMVSITTLFELS 142

Query: 150 KSFVKIILVGTII------TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
           K+ +K  L+  I       ++SL  N   M      N    L      V  +L +I   I
Sbjct: 143 KNTLKASLLFGIALFILKGSVSLILNSAQMPLLEGVN---FLIDLLIKVVLILGVIAFLI 199

Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATS 263
           A L      W Y +   +++MSKQE+K+E KQ  G P +K + K+  R   R +MM    
Sbjct: 200 ALLDFAYKKWDYER---RIRMSKQEVKEEFKQLEGQPEVKAKVKARMREMARGRMMAEVP 256

Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
           +A+++ITNPTHYA+ALRY   ++ APV+VAKG+  +A+++ K+A E+ +P+  +P LAR+
Sbjct: 257 KASVVITNPTHYAIALRYDAEKDRAPVVVAKGKGTLAERIIKVAEENEVPVIRKPELARA 316

Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++  V +   IPP FY+AVA++I  I  +K
Sbjct: 317 MYSAVDVGDEIPPEFYRAVAEIIAFITFRK 346


>gi|332294884|ref|YP_004436807.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense
           DSM 14796]
 gi|332177987|gb|AEE13676.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense
           DSM 14796]
          Length = 349

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 16/350 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           ++TE  + ++  +A   G    S+E S         I L FF   G     +  +V    
Sbjct: 7   DRTEPATDRRRREARKMGQVAKSQELSSILVFFGSYIVLQFFLVIGF---NNWFNVWKGF 63

Query: 69  ATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   L+ ++ +  F++  L L+     IP ++  +   + S ++Q   V+    + P F
Sbjct: 64  FSFDSLDLNLHYHNFIMAFLLLT-----IPPVVGALFMALFSNILQVGFVITPQVLIPKF 118

Query: 128 KRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             + + +  KR+ S   LV+  +K  +KI+++  I+T SL E +  +L+    + H    
Sbjct: 119 SNLDITKYFKRLLSFRGLVDQVLKPTIKILILAYILTSSLLEAFPEILNLSFIDVHKGFQ 178

Query: 187 HAFFTVRKVLI---MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                V  +L+   ++L F A +  L   W Y +    ++MSKQE+K+E K + G+P+IK
Sbjct: 179 IVIKIVTSILVKTMVVLFFFALIDYLFQRWQYEK---SIRMSKQELKEEFKTTEGDPLIK 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R K +     R +MM+   +A +IITNPTH A+A+ Y   +  AP +VAKG  ++A+K+
Sbjct: 236 ARIKRLQSEMARRRMMQEVPKADVIITNPTHVAVAIFYDPEKFKAPKVVAKGMGIVAEKI 295

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +IA E+++P+    +LAR+LFK+V IN  IP  FYKAVA ++  +Y KK
Sbjct: 296 IQIAKENDVPLVRNETLARALFKEVEINFEIPEKFYKAVASILATVYKKK 345


>gi|197120182|ref|YP_002140609.1| flagellar biosynthesis protein FlhB [Geobacter bemidjiensis Bem]
 gi|197089542|gb|ACH40813.1| flagellar biogenesis protein FlhB [Geobacter bemidjiensis Bem]
          Length = 353

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 187/355 (52%), Gaps = 6/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SV 58
           M++ D   +KTE P+SKKIE+A N+   P SRE +   S++  ++ L  + S G++  ++
Sbjct: 1   MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTL--YASSGLFLRTM 57

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +  +     + +L   +    ++      A  L  P +L+ ++ GI   + Q    +
Sbjct: 58  KTSMQEIFGGLARPELTYAAVHTLMIKEFGYLAIMLA-PFILVGIVVGIAVEVTQGGVTV 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   +K    R++  +G+ R+++ +++    KSF+K+ +VG +    LTE    ++  + 
Sbjct: 117 SSEKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIVYLVD 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +   I+        K+++     +  L VLD+ +   ++   LKM+KQE+KDE K   G
Sbjct: 177 QDLMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFMDNLKMTKQEVKDEHKNMEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK + K       R +M +    A +++TNPTHYA+AL+Y + +  APV++ KG + 
Sbjct: 237 DPAIKGKMKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQ 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A +++  A E+N+ + E   LAR L+ QV     IP   + AVA+++  +Y  K
Sbjct: 297 MALQIKITARENNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351


>gi|225181592|ref|ZP_03735033.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1]
 gi|225167700|gb|EEG76510.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1]
          Length = 309

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 159/300 (53%), Gaps = 35/300 (11%)

Query: 82  FLLTHLSLSA-------SRLVIPGLL-LFMMFGIGSYLIQRIPV--------LNLNHVK- 124
           FL  HL+ +         RL+ PG L    M   G + +   PV        L +N+++ 
Sbjct: 11  FLFNHLAQTMLRFLQMDGRLLTPGNLNALTMRAFGDFFLFMAPVFAVSLIAGLAVNYLQV 70

Query: 125 ----------PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                     P F R++  EG K+I S   L    KS +K+++VG +  + +  N   +L
Sbjct: 71  GFLFTTEPLNPQFNRLNPAEGFKKIASKRALFELAKSLLKVLMVGFVAFLFVRGNLENLL 130

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIK 230
             +  +   +    + T+R + + + L I  L    +VLD  +  ++    LKMSKQEIK
Sbjct: 131 ATLYQDAAGV----WETLRSLSLNLALRIGALFLVLSVLDYIYQRYEHNQNLKMSKQEIK 186

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           +E KQ  G+P +K++ +   RS    +MM+    AT++ITNPT  A+A+RY +  ++AP 
Sbjct: 187 EEHKQMEGDPQLKSQLRERQRSIATQRMMQDVPEATVVITNPTELAVAIRYREDRDEAPT 246

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG  L+AK++R+ A E+N+PI E   +AR L+ QV I   IP   Y+AVA+++  +Y
Sbjct: 247 VVAKGAALMAKRIRETAKENNVPIMENKPVARMLYDQVEIGQEIPVDLYQAVAEILALVY 306


>gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile 630]
 gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile]
          Length = 604

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 185/345 (53%), Gaps = 1/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + KK  +   +GN   SRE  +  ++LA  + +   FS  + ++ S L+  L+ 
Sbjct: 253 DKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 312

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                + + S++  L+    +   ++ +P  + F++ GI + L Q   +     +KP+  
Sbjct: 313 DFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKPNLS 371

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++Y  
Sbjct: 372 KLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 431

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P +K + K 
Sbjct: 432 KDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAKIKQ 491

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA 
Sbjct: 492 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 551

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 552 GNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596


>gi|157961202|ref|YP_001501236.1| flagellar biosynthesis protein FlhB [Shewanella pealeana ATCC
           700345]
 gi|157846202|gb|ABV86701.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
           700345]
          Length = 377

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 185/362 (51%), Gaps = 23/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  +S+K++ A ++G    S++    + ++A  + LL    P I     
Sbjct: 1   MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLLMT-GPNIAQAMF 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF-----GIGSYLIQRI 115
           ++   + + ++ ++ D +    ++    +  S L  P LL F++F       G+  +  I
Sbjct: 60  NIMNKMYTLSRDEIFDTNQ---MMNVWGVVGSELAFP-LLGFIVFLALIAFAGNIALGGI 115

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYF 171
              +++   P   ++S   G KR++ +  +V   K   K  +V      +++I L +   
Sbjct: 116 S-FSVSAFMPKASKMSPVAGFKRMFGVQAVVELAKGIAKFSVVAITAYLLLSIYLNDILL 174

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEI 229
              + +  N    +YHA   +  V I ILL  +TL ++ I   +  W    +LKM+KQEI
Sbjct: 175 LSQEHLPGN----IYHALDLI--VWIFILLCASTLLIVMIDVPFQIWNHAKQLKMTKQEI 228

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           KDE K + G P +K R + + R   + +MM     A +I+ NP HYA+A++Y    + AP
Sbjct: 229 KDEYKDTEGKPEVKGRIRQLQREMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAGRSTAP 288

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +VAKG + +A K+R+IA EH++ I   P LAR+++    I+  IP   + AVAQ++  +
Sbjct: 289 FVVAKGVDEVAFKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYV 348

Query: 350 YH 351
           + 
Sbjct: 349 FQ 350


>gi|167571643|ref|ZP_02364517.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           C6786]
          Length = 400

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 183/368 (49%), Gaps = 32/368 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI----- 55
           M+E D+   +TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S  I     
Sbjct: 1   MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWLLSGPISEHLR 58

Query: 56  ----------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
                      +   D H +L+ A    LE +  +  LL    ++A  L  P        
Sbjct: 59  TMLHAAFSFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAA--LAAP-------M 109

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
            +G +L+      +    +  F+R++   G+ RI+SI   +    S  K ++VG I   +
Sbjct: 110 ALGGWLV------STKTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAA 163

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +  +   +L   +   H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+
Sbjct: 164 IWRSKDELLGLATQPLHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMT 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E+K E +++ G+P +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E
Sbjct: 224 KEEVKREHRENEGDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGE 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG NL+A ++R +A EH++P+ E P LAR+L+  V +   IP   Y AVA++
Sbjct: 284 MRAPKVVAKGVNLVAGRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEV 343

Query: 346 IYKIYHKK 353
           +  +Y  K
Sbjct: 344 LAWVYQLK 351


>gi|260776470|ref|ZP_05885365.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607693|gb|EEX33958.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 376

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 195/361 (54%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  +Y+
Sbjct: 1   MAESDG-QERTEDATPRRLQQAREKGQVARSKELASVSVLVIGAIALMWFGESLARALYT 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           V   L  L    ++ ++ D+  +  + L  +      L++  ++LF+   IG+  I  I 
Sbjct: 60  VMGRLFDL----SRDEIFDLPKLFDIALGSMGSLLGPLLLILVVLFIAALIGAAGIGGIS 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173
             ++    P + +++   G+KR+  + + V  +KS +K+ LV  +   +  +  E+ F +
Sbjct: 116 -FSVEAAMPKWSKMNPLSGLKRMVGLQSWVELLKSILKVTLVSGVAFYLIDAAQEDLFQL 174

Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            +D    N    ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE
Sbjct: 175 SMDVYPQN----IFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K++ G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++V
Sbjct: 231 YKETEGKPEVKGRIRMLQREAAQRRMMSEVPQADVIVTNPEHFSVALRYKQDTDKAPIVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  
Sbjct: 291 AKGTDHMALKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|303326438|ref|ZP_07356881.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3]
 gi|302864354|gb|EFL87285.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3]
          Length = 359

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 179/349 (51%), Gaps = 8/349 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           ++TE  + K+      EGN P S+E     S+   LI L  +  P    + +     L  
Sbjct: 9   SRTEEATPKRRNKQRQEGNVPKSQELGKAVSLTGGLIALHLWLGPMTEEIKTLFRRFLGH 68

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP--- 125
           A +    +  ++  L   L++   ++++P   + +  G  ++L QR+ V  L   K    
Sbjct: 69  AWEFD-PNPQNVYTLSIDLTVELCKIILP---ILLFLGFLAFLAQRLQVGKLWTTKVFKF 124

Query: 126 SFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
            ++R ++ +G+K++ +S    +  +KS +  I++  I    + + Y   L    A P  +
Sbjct: 125 KWQRFNIIKGLKQMMFSPQTALRTIKSLLFSIILALIPGYLIYQEYQNFLPMYYATPEGV 184

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
             +      K+    LL I  +   D+  S   +   +KM+K E+KDE KQ+ G+P+IK 
Sbjct: 185 AAYMLQMGLKLAYYALLPILAIAAFDVWQSRFAYKEGMKMTKDEVKDERKQAEGDPVIKG 244

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +Q+      +  +MM+   +A +++TNPTH A+ALRY   E  APV++AKG + +A+K++
Sbjct: 245 QQRRKMMEVVMKRMMQDVPKADVVVTNPTHIAVALRYNAQEAPAPVVLAKGADHLAEKIK 304

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A EHN+PI E   LAR+L+K V +   +P   YKAVA ++  I+  K
Sbjct: 305 AVAREHNVPIRENVPLARALYKAVEVGDMVPEELYKAVATVLASIWKLK 353


>gi|146282913|ref|YP_001173066.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri A1501]
 gi|145571118|gb|ABP80224.1| flagellar biosynthetic protein FlhB [Pseudomonas stutzeri A1501]
          Length = 378

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 183/361 (50%), Gaps = 21/361 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +K+E P+ K++ ++  +G    SRE S     +A  +  +         +  
Sbjct: 1   MAESESGADKSEEPTEKRLRESREKGQLARSRELS----TVAVTLGGIGGLLASGGGLAQ 56

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI------GSYL 111
            L  ++      ++  L D   +V LL    L A   ++P L+  ++  I      G +L
Sbjct: 57  TLMAMMQGTFELSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWL 116

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                  +   + P   R++   G+KR++S   LV  +K+  K ++V  +  + L+  Y 
Sbjct: 117 ------FSAKAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLS-AYQ 169

Query: 172 TMLDFISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
             L  I+  P  + + H+   V    + +   +  +  +D+ +       KL M+KQE+K
Sbjct: 170 DDLLSIAKQPLDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVK 229

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE K S G P +K+R + + R   + +MM+A   A ++ITNPTH+A+AL+Y   +  AP 
Sbjct: 230 DEYKDSEGKPEVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPR 289

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           LVAKG + +A K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y
Sbjct: 290 LVAKGGDFVALKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVY 349

Query: 351 H 351
            
Sbjct: 350 Q 350


>gi|259907600|ref|YP_002647956.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|224963222|emb|CAX54706.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|283477442|emb|CAY73358.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163]
          Length = 381

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 179/350 (51%), Gaps = 7/350 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + KTEAP+  +I  A  EG  P S+E    +++L  L+        G   V S L 
Sbjct: 3   QESDNEKTEAPTPSRIAKAREEGQIPRSKE---LTTLLMLLVGWGLMLCSGGNLVRS-LQ 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LL +A    +  + D + ++   + L   A + ++P +   ++  + +  +    +L+ 
Sbjct: 59  SLLHNAMIFDRLLILDPAQMLQRSSSLLGQAFKAIMPFVFGLLLTAVSAPPLIGGLILSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K+++   GIKR++S       +K+ +K++L      + L  N    +  I   
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   L+ +++ +  +   D+ +  +  + KL+MS+QEIKDE K+  G+P
Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R+  + +MM     A +I+ NPTHY++AL+Y      AP +VAKG  L+A
Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R++A  H +P+ E P LAR+L++   I + IP   Y AVA+++  +Y
Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVY 348


>gi|159024053|gb|ABW87281.1| HrcU [Xanthomonas fuscans subsp. fuscans]
          Length = 357

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y     +  L+ 
Sbjct: 3   EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FADHMRALMT 58

Query: 68  SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                     D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P
Sbjct: 59  IGFDFPENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I 
Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E+K+S G+P IK
Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  A+P   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335


>gi|327481253|gb|AEA84563.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166]
          Length = 378

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 183/361 (50%), Gaps = 21/361 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +K+E P+ K++ ++  +G    SRE S     +A  +  +         +  
Sbjct: 1   MAESESGADKSEEPTEKRLRESREKGQLARSRELS----TVAVTLGGIGGLLASGGGLAQ 56

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI------GSYL 111
            L  ++      ++  L D   +V LL    L A   ++P L+  ++  I      G +L
Sbjct: 57  TLMAMMQGTFELSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWL 116

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                  +   + P   R++   G+KR++S   LV  +K+  K ++V  +  + L+  Y 
Sbjct: 117 ------FSAKAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLS-AYQ 169

Query: 172 TMLDFISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
             L  I+  P  + + H+   V    + +   +  +  +D+ +       KL M+KQE+K
Sbjct: 170 DDLLSIAKQPLDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVK 229

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE K S G P +K+R + + R   + +MM+A   A ++ITNPTH+A+AL+Y   +  AP 
Sbjct: 230 DEYKDSEGKPEVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPR 289

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           LVAKG + +A K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y
Sbjct: 290 LVAKGGDFVALKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVY 349

Query: 351 H 351
            
Sbjct: 350 Q 350


>gi|320177760|gb|EFW52748.1| Flagellar biosynthesis protein FlhB [Shigella boydii ATCC 9905]
          Length = 383

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 186/349 (53%), Gaps = 29/349 (8%)

Query: 19  IEDALNEGNAPISREAS--LFSSILACLIY---------LLFFFSPGIY---SVTSDLHV 64
           +E A  EG  P SRE +  L   +  C+I+         L    S G++   S+ +D ++
Sbjct: 18  LEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLSAGLHFDHSIINDPNL 77

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +L        E +  ++ L++ + L A  L+ P +L  ++F   S             ++
Sbjct: 78  ILGQIILLIREAMLALLPLISGVVLVA--LISPVMLGGLVFSGKS-------------LQ 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P + 
Sbjct: 123 PKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITA 182

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K 
Sbjct: 183 MGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKG 242

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R
Sbjct: 243 RIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIR 302

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 303 EIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|218887105|ref|YP_002436426.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758059|gb|ACL08958.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 356

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 191/364 (52%), Gaps = 24/364 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D   +KTE  + K+   A N+GN P S+E +   +ILA  + LL +    I  +  
Sbjct: 1   MAQRDP--SKTEKATPKRRNKARNKGNVPKSQELTKALTILAGSVGLLSY----IDFLAK 54

Query: 61  DLHVLLASATQRKLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           D+  L           I    +++ LL  L+   + +++P ++LF+  G  ++L+ R+ V
Sbjct: 55  DMQTLFRHFLGNAFGFIPNQQNVIKLLMWLAGELAAMLLP-IMLFI--GFTAWLVLRLQV 111

Query: 118 LNLNHV---KPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
             L      K ++ R ++   +KR++ S    +   KS ++ + +G    I +       
Sbjct: 112 GKLWTTEVFKFNWSRFNILAALKRMFVSPETFMRLGKSLLQALFIGVAPYIIIRREMHNF 171

Query: 174 LDFISANPHSI----LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           L    A+   I    L   +  VR  L+ + + IA        WSY +    LKM+K E 
Sbjct: 172 LPLYYADAQGISAYMLKTGWDMVRYALVPMFI-IAIADFWYTRWSYEE---NLKMTKDET 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           KDE KQ+ G+P+++ +Q+      +  +M++   +A ++ITNPTH+A+ALRY  TE  AP
Sbjct: 228 KDERKQAEGDPVVRAQQRRKMMQMMAKRMLQDVPKADVVITNPTHFAIALRYDATEAPAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +++AKG + +A+K++++A EH +PI E   LA++L+K V +   IP   ++AVA ++  +
Sbjct: 288 IVLAKGADNLAQKIKEVAREHGVPIRENKPLAQALYKAVEVGDMIPAELFQAVATVLASL 347

Query: 350 YHKK 353
           +  K
Sbjct: 348 WKFK 351


>gi|167770199|ref|ZP_02442252.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM
           17241]
 gi|167667521|gb|EDS11651.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM
           17241]
          Length = 291

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 160/277 (57%), Gaps = 15/277 (5%)

Query: 80  IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
           I F+L+ L L    L+I GL++ +       + Q   +  +    P F R++  +GIK++
Sbjct: 22  IFFVLSALPL----LLICGLVVVI-----CTVAQTRGLFTMKAAAPKFGRMNPLQGIKKM 72

Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISANPHSILYHAFFTVRKVL 196
           +S+  +V  +KS VKII++G II  SL E +F M   +D       +   +    + K  
Sbjct: 73  FSLRGVVELLKSIVKIIILGYIIYNSLGEQFFFMPRLMDMSLEQALAFTGNIILDIAKTA 132

Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256
            ++++F+A    L   W + +    L+MSKQE+K+E KQ+ G+P +K + K   + + R 
Sbjct: 133 AIVMVFVAGFDYLYQWWDFEK---NLRMSKQELKEEFKQTEGDPQVKGKIKERQQQQARQ 189

Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316
           +MM+    A ++I NPTHYA+A++Y   +N+APV++AKG + +A ++ K+A EH+I   E
Sbjct: 190 RMMQNVPNADVVIRNPTHYAVAIQYNPHQNNAPVVIAKGMDSLALRIVKVAQEHDIITME 249

Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
              LAR L++ V ++  IP  FY+ VA+++  +Y+ K
Sbjct: 250 NKPLARGLYETVDLDREIPEQFYQPVAEVLAFVYNLK 286


>gi|255523688|ref|ZP_05390654.1| type III secretion exporter [Clostridium carboxidivorans P7]
 gi|296186692|ref|ZP_06855094.1| putative flagellar biosynthetic protein FlhB [Clostridium
           carboxidivorans P7]
 gi|255512557|gb|EET88831.1| type III secretion exporter [Clostridium carboxidivorans P7]
 gi|296048729|gb|EFG88161.1| putative flagellar biosynthetic protein FlhB [Clostridium
           carboxidivorans P7]
          Length = 283

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 147/261 (56%), Gaps = 4/261 (1%)

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +P +L  M  G+ +  +Q   ++    +KP F +++   G KRI+S+  ++   K    +
Sbjct: 24  LPVVLPIMFMGVLANFLQTGALITSEPLKPDFSKLNPINGFKRIFSMRTVMELFKDLAMV 83

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
            +VG +    + +NY  +L   S N  ++          +   I + +  + ++D  +  
Sbjct: 84  SIVGFVGYKFVKDNYEYILTLGSLNAQAVAAAVSKLTINIFFRITILMIIIALIDYVYQR 143

Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
            Q+   LKMSKQE+K+E KQ  G+P IK++ K   R     +MM+   +AT+++TNPTH 
Sbjct: 144 FQFNKDLKMSKQEVKEEYKQDEGDPQIKSKIKQKQREMATRRMMQEVPKATVVVTNPTHI 203

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y Q   +APV+ AKG + +A K+++IA E+++PI E   LAR ++ +V ++  IP
Sbjct: 204 AVALKY-QEGLNAPVVAAKGADRVALKIKEIAKENDVPIIENKPLARLMYSEVELDEEIP 262

Query: 336 PVFYKAVAQ---LIYKIYHKK 353
              Y+AVA+   L+YKI  +K
Sbjct: 263 MDMYEAVAEILALVYKIKERK 283


>gi|332096673|gb|EGJ01664.1| flagellar biosynthetic protein FlhB [Shigella boydii 3594-74]
          Length = 343

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 140/237 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 75  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 134

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 135 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 194

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 195 EGDPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 254

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  I+  K
Sbjct: 255 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 311


>gi|254292632|ref|YP_003058655.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814]
 gi|254041163|gb|ACT57958.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814]
          Length = 354

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 185/353 (52%), Gaps = 16/353 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+     KTE P+ K+++DA  +G+   S++  ++  +LA    +     P   S+  
Sbjct: 1   MAEDQDDSQKTEEPTQKRLDDARKKGDIAKSQDVPVWFILLAGAALIAGA-QPLASSIGG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF---MMFGIGSYLIQRIPV 117
            L +LL      +L        +   L      L+ P  ++F   ++F I  +++Q +P+
Sbjct: 60  PLTMLLDHPHDFQLSGGGAQRLMTAILG----ELLGPMAIVFSIIIVFAISGHVVQHMPL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF- 176
                +KP   ++S   G+KR++     +N  K+ +K+I     +  ++  +   ++   
Sbjct: 116 WTAEKMKPKLSKLSPIGGLKRMFGPQGWMNLFKAILKLIAATVAVAFAVWPSRHELIKVG 175

Query: 177 ---ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
              ISA P  I   A     ++ +  L+ +  +  +D  +       K++MS+++IK E 
Sbjct: 176 EMDISALPLMIQDKA----SRLFLAALIVVGFIAAIDYVFQKQSHAKKMRMSREDIKQEN 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQS G+P++K +  ++ R R + +MM A   AT+++TNPTHY++AL++    + AP+ VA
Sbjct: 232 KQSDGDPMVKAKLAALRRQRSQGRMMAAVPEATVVVTNPTHYSIALKFDPEVDAAPICVA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           KG + +A ++R+IA E ++P+ E P LAR+LF    +   +P   ++AVA++I
Sbjct: 292 KGVDEVALRIREIAKESDVPLVESPPLARALFATAELEQVVPREHFEAVAKVI 344


>gi|269961633|ref|ZP_06175995.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3]
 gi|269833674|gb|EEZ87771.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3]
          Length = 376

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  ++S
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 58  VTSDLHVLLASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           + S L  L         KL DI+        ++     L +  + LF+   IG+  +  I
Sbjct: 60  IMSRLFDLKRDEIFDTAKLFDIA-----FGAMTDLLFPLFLILITLFVAAMIGAAGVGGI 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +     P   +++   G+KR+  + + V  +KS +K+ LV T + I L +     L 
Sbjct: 115 S-FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALV-TGMAIYLIQASQADLI 172

Query: 176 FISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
            +S +  P +I +HA   +   +++I   +  +  LDI +   Q   +LKM+KQEIKDE 
Sbjct: 173 QLSMDVYPQNI-FHALDILLNFILLISCSLLIVVALDIPFQIWQHADQLKMTKQEIKDEY 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G P +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + APV++A
Sbjct: 232 KETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 292 KGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|224370771|ref|YP_002604935.1| FlhB2 [Desulfobacterium autotrophicum HRM2]
 gi|223693488|gb|ACN16771.1| FlhB2 [Desulfobacterium autotrophicum HRM2]
          Length = 357

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 189/367 (51%), Gaps = 28/367 (7%)

Query: 1   MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGI 55
           M+E+      KTE  SSKK+E A  EG    S E      L + +LA   +  F +   I
Sbjct: 1   MAEDPGGGGEKTEGASSKKLEKAREEGQVAKSTEVPSVVVLLAGVLALNAFAFFIYQRLI 60

Query: 56  YSVTSDLHVLLASATQRKLED---ISHIVFLLTHLSLSASRL-VIPGLLLFMMF--GIGS 109
             +   L     S T   L +   + H++F+ T       RL +I G LL  +F   + S
Sbjct: 61  LVLQDGL-----SFTGIPLSNDVAVVHLLFVATQ------RLFIILGPLLLAVFVAALVS 109

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGT--IITISL 166
            + Q   VL+   V P F R+   +G  + +S   L+ F+KS +KI I+ G   ++  S 
Sbjct: 110 NIFQVGFVLSWKAVAPKFSRIDPIKGFAQKFSSRALMEFLKSILKIAIIFGVTYMVVKSE 169

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
            EN   + D   A   +IL +      ++ I ++L +A L  +D  +   ++    KM+K
Sbjct: 170 VENIIRLYDHGVA---AILLYVLKVSLEIFIKVILVMAVLAAIDFAFQRWKFMEDQKMTK 226

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE KQ+ G+P +K R + +  +  R +MM     A +++TNPT  A+A+RY     
Sbjct: 227 QEVKDEHKQAEGDPQVKARIRQLQATAARKRMMSDVPEADVVVTNPTRLAIAIRYDGMTM 286

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP +VAKG   +A  +R+IA E N+P+ E  +LAR+L+K V +   +P   ++AVA+L+
Sbjct: 287 NAPTIVAKGAGAVAANIRRIAEESNVPLVENKALARNLYKIVEVGQEVPTEEFQAVAELL 346

Query: 347 YKIYHKK 353
            ++Y  K
Sbjct: 347 AQVYKLK 353


>gi|269792925|ref|YP_003317829.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100560|gb|ACZ19547.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 366

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 181/367 (49%), Gaps = 46/367 (12%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + KTE  + +K   A  EG    S++ +    + S +L  L++  FFF          L 
Sbjct: 15  EEKTEPATPRKRRKAREEGQVTKSQDLTAAVVIASGLLGVLVFGGFFFR--------RLQ 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP------- 116
           +L A            ++  L   S+         LLL     +GSYL+   P       
Sbjct: 67  LLFA-----------QVMGYLKDPSMGGEEW----LLLPFSRALGSYLLIWFPLGLACAL 111

Query: 117 ------------VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
                       ++    + P+  R++   G+K+++S  + V  +K  +K +++  ++  
Sbjct: 112 AALGLMAYQVGLMITPKPLVPNLNRMNPVSGMKKMFSGRSFVEMLKGVLKALILLLMLYG 171

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           +L ++  T+L  I       L    + V  + + + L +  L + D  +   ++   ++M
Sbjct: 172 ALRKDLLTLLGAIGQPFGEGLGLVMWRVWVLCMKMTLMLMVLGLFDYAYQRWEFERSIRM 231

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           SKQEIK+E KQ  G+P++K R +   R   R +MM    +A ++ITNPTH A+AL Y + 
Sbjct: 232 SKQEIKEEYKQMEGDPLVKRRIRQRQRELARRRMMSDVPKADVVITNPTHVAVALSYDRK 291

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
             +APV++AKG+ LIA+++R+IA E+ +P+ + P LAR+++ QV +   IP   YKAVA+
Sbjct: 292 VAEAPVVLAKGKGLIAQRIREIARENRVPVVQNPPLARAIYAQVEVGEEIPESLYKAVAE 351

Query: 345 LIYKIYH 351
           ++  +Y 
Sbjct: 352 VLAFVYR 358


>gi|83749403|ref|ZP_00946397.1| Probable transmembrane flagellar biosynthetic protein (flhB)
           [Ralstonia solanacearum UW551]
 gi|207738850|ref|YP_002257243.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum
           IPO1609]
 gi|83723930|gb|EAP71114.1| Probable transmembrane flagellar biosynthetic protein (flhB)
           [Ralstonia solanacearum UW551]
 gi|206592220|emb|CAQ59126.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum
           IPO1609]
          Length = 387

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 180/358 (50%), Gaps = 32/358 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S++++E A  EG+ P SRE          + ++L   S G   V  +  V  AS
Sbjct: 8   EKTEPASARRLEQAREEGDVPQSRE---------LVSFVLLTVSAGGLWVMGESIVRAAS 58

Query: 69  A-TQRKLE----DISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           A   R LE    D +       ++      L  V+ GL+L +     + L      ++  
Sbjct: 59  AFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLALAALAPLALTRGAISFK 118

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML----DFI 177
            + P   R+    G+KR++S+  L+   +   K++LVG +        ++ +L    DF+
Sbjct: 119 PLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGV-------GWWLILHYRDDFV 171

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEI 233
              P   L         V  +  L +A + +L    D+  +  Q+  K +M+K+E++ E 
Sbjct: 172 EL-PRQDLVTGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           ++S G+P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++A
Sbjct: 231 RESEGDPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG +++A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y 
Sbjct: 291 KGADMVAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQ 348


>gi|330815159|ref|YP_004358864.1| FlhB [Burkholderia gladioli BSR3]
 gi|327367552|gb|AEA58908.1| FlhB [Burkholderia gladioli BSR3]
          Length = 404

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 179/365 (49%), Gaps = 31/365 (8%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
            D+   KTE  + ++ E A  EG    SRE S F+ +LA   Y  +  S  I        
Sbjct: 3   EDSDLEKTEEATPRRREKAREEGQVARSRELSSFA-LLAAGFYGAWMLSGPIGEHLRTML 61

Query: 56  -------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108
                   +   D H +L  A +  +E +S +  +L    L+A               +G
Sbjct: 62  RGSLGFDRAAAFDTHAMLTGAGRAGMEGLSALAPVLALTGLAAL---------AAPIALG 112

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
            +L      L+   +   F R++   G+ RI+S+  L+    +  K ++VG I  I++ +
Sbjct: 113 GWL------LSGKAIGFKFDRLNPISGLGRIFSLQGLIQLGMALAKTVVVGGIGGIAIWK 166

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           +   +L  +    H  L      V     + +  +  +  +D+ +   Q+  KL+M+K+E
Sbjct: 167 SREELLGLMMLPLHQALADTLHLVAVCCGVTVAGMLVVAGMDVPYQLWQYNKKLRMTKEE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +K E +++ G+P +K R +   R+  R +MM    +A +++TNPTH+A+ALRY   E  A
Sbjct: 227 VKREHRENEGDPHVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P +VAKG NL+A ++R++A EH +PI E P LAR+L+  V +   IP   Y AVA+++  
Sbjct: 287 PKVVAKGINLVAARIRELAEEHRVPILEAPPLARALYHNVELEREIPGPLYSAVAEVLAW 346

Query: 349 IYHKK 353
           +Y  K
Sbjct: 347 VYQLK 351


>gi|288942622|ref|YP_003444862.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM
           180]
 gi|288897994|gb|ADC63830.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM
           180]
          Length = 384

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 181/353 (51%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    ++EAP++K++ ++  +G    SRE + F  ++    +LLF    G+ +  S
Sbjct: 1   MAENENGQERSEAPTAKRLRESREKGQVARSRELNTFIILIVGGAFLLFLGG-GMAARIS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVL 118
            L +   +  +  + D   +V  L HL   A  ++ P  GLL+ +   +G  L+  +   
Sbjct: 60  QLMIDGWTLERGLIFDEGLLVPHLQHLLGRALLILAPLFGLLMVIAL-MGPILVGGLN-F 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P F +V+   G+KR++S+  L+  +K   K  LVG + T+++   +  +L    
Sbjct: 118 STQALMPKFSKVNPISGLKRVFSVQGLMELVKGLGKFGLVGIVATLAIMSIWGNLLTLGE 177

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                 +         + ++    +  +  +D+ +       +L+M+ QEIKDE K++ G
Sbjct: 178 LPVEQAIVQTVHMAAWLFLIAAAALLVVAAIDVPFQVWNHQKQLRMTLQEIKDEFKETEG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
            P +K R + +     + +MM    +A ++ITNPTHYA+A+ Y+     AP L+AKG + 
Sbjct: 238 KPEVKGRIRQLQHEMSQRRMMSEVPKADVVITNPTHYAVAISYVPAIMPAPRLLAKGTDA 297

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A+ +R +A EH I   E P +AR+++    +N  IP   + AVA+++  +Y 
Sbjct: 298 VAQAIRALAEEHRIVRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQ 350


>gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-66c26]
 gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile CIP 107932]
 gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-76w55]
 gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-97b34]
 gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-37x79]
 gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile CD196]
 gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile R20291]
 gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-32g58]
 gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196]
 gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291]
          Length = 604

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 184/345 (53%), Gaps = 1/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + KK  +   +GN   S+E  +  ++LA  + +   FS  + ++ S L+  L+ 
Sbjct: 253 DKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 312

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                + + S I  L+    +   ++ +P  + F++ GI + L Q   +     +KP+  
Sbjct: 313 DFYMNI-NYSSIEKLVIAGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKPNLS 371

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++Y  
Sbjct: 372 KLNPVSGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 431

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P IK + K 
Sbjct: 432 KDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAKIKQ 491

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA 
Sbjct: 492 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 551

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 552 GNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596


>gi|239817109|ref|YP_002946019.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110]
 gi|239803686|gb|ACS20753.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110]
          Length = 382

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 179/355 (50%), Gaps = 21/355 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  S +++E A  +G+   SRE + F         LL     G++     L   L  
Sbjct: 8   EKTEPASPQRLEKAREQGDVARSRELATF--------VLLGTAVAGLWLTADSLGATLRG 59

Query: 69  ATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           A  + L        D SH++     +   A   ++P   + ++  + + L+    +L+  
Sbjct: 60  ALAQGLHFDRAAAFDPSHMLARAGLMGQQALLALVPLFGMMLVAAVAAPLMLGGWLLSAK 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            + P F ++    G+ R++S   L    K+  K +L+G +  + + +N   +   ++ + 
Sbjct: 120 ALAPKFSKLDPVAGVGRMFSAQALSELFKALAKSLLIGGVAWLVIMDNVDEVSALMAQSE 179

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIG---WSYHQWYSKLKMSKQEIKDEIKQSYG 238
            + L      V     +I   +  + ++D+    WSYH+   KL+MS+++++ E K+S G
Sbjct: 180 RAALPQMIVLVAHNCALIASALFLVALVDVPYQLWSYHR---KLRMSREDLRQEHKESEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK + +   +   R +MM    +A I++TNPTH+A+AL+Y+  +  AP +VAKG +L
Sbjct: 237 DPHIKAQIRRQQQQMARRRMMSEVPKADIVVTNPTHFAVALKYVDHDMRAPRVVAKGSDL 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A ++R+IA E+N+ I E P L R+LFK   +   IP   Y AVA+++  +Y  K
Sbjct: 297 MAARIREIARENNVAILEAPPLTRALFKHTRLGDEIPAGLYTAVAEVLAWVYQLK 351


>gi|157363487|ref|YP_001470254.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
 gi|157314091|gb|ABV33190.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
          Length = 376

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 181/345 (52%), Gaps = 3/345 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P+ ++   A  EG    S E ++  + L  +  + F F   I  + +   + 
Sbjct: 32  ADPEKTEKPTPRRRRKAREEGQVATSNELNMAVTFLVAVFVMRFIFQRLIMFLENGSILF 91

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +      L ++S  ++     ++    L+   L++ ++F  G+  +Q   +L+   +K 
Sbjct: 92  FSLEENDFLNNLSGRIYQSFKDTIFLLVLLFLSLIISVIFA-GA--MQTKFLLSFKPLKM 148

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             KR++  EG KR +S+ +L   +KS +K+++VG +    +  N+     +        L
Sbjct: 149 DLKRINPVEGFKRFFSMRSLFELLKSILKMVIVGFVAYSVIRSNWILFRFYSDMETVDSL 208

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F    +V++   + +  L ++D  +   ++   ++M+KQEIK+E ++  G+P ++ R
Sbjct: 209 KLIFNLTYEVMLKCAIALFILAIVDYFYQRWEFEKSIRMTKQEIKEEYREIEGSPEVRRR 268

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ I     R +M++    A ++ITNP+H A+A+ Y   E +APV++AKG + IA+K+ +
Sbjct: 269 QREIMARLARGRMLQQVPEADVVITNPSHIAVAIEYKSEEMEAPVVLAKGADEIAQKIIQ 328

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           IA E+NIP+   P +AR L+K   I   IPP  Y+AVA+++  +Y
Sbjct: 329 IAKENNIPVVRNPQVARELYKTTDIGEQIPPNMYRAVAEILAYVY 373


>gi|313497812|gb|ADR59178.1| FlhB [Pseudomonas putida BIRD-1]
          Length = 380

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 180/369 (48%), Gaps = 36/369 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFS-----------------SILAC 43
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +                   L  
Sbjct: 1   MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
           L+ + F  +  I      +   L ++ +  +  +  ++ LL  +S      V P  L   
Sbjct: 61  LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISF-----VAPIALSGF 115

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
           +F  GS L            +P F R++   GIKR++S+  L   +K+  K  ++  +  
Sbjct: 116 LFS-GSLL------------QPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAV 162

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
           + L+ +   +L   +      + H+   V    + +   +  +   D+ +  +Q + K+K
Sbjct: 163 VVLSGDRQALLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMK 222

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI- 282
           M+KQE++DE K S G P +K R + + R   + +MM A   A +IITNPTHYA+AL+Y  
Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDP 282

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           +    AP+L+AKG + +A K+R+I  EHNI I E P+LAR+++    +   IP   Y AV
Sbjct: 283 EKGGAAPLLLAKGSDFMALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAV 342

Query: 343 AQLIYKIYH 351
           AQ++  ++ 
Sbjct: 343 AQVLAYVFQ 351


>gi|257876006|ref|ZP_05655659.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC20]
 gi|257810172|gb|EEV38992.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC20]
          Length = 355

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 181/358 (50%), Gaps = 30/358 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64
           D KTE PS+K++ DA   G  P ++E +   S+L     ++ L  FF+       S    
Sbjct: 5   DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLPYFSRSLA 64

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            LA   Q  L D+     L     L    L  P  L+ +  G+ +   Q   + +   VK
Sbjct: 65  QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAVK 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181
           P FK+++   GIK+ +S+ +L+N  K+  K    G I+       Y     F++A P   
Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLSKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170

Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                    +IL+      +++ + I +F+  L V+D G+  +     L MSKQE+K+E 
Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIVLAVVDYGYQRYSHRKNLMMSKQEVKEEF 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  G+P +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++A
Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG + +A++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y 
Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346


>gi|167034909|ref|YP_001670140.1| flagellar biosynthesis protein FlhB [Pseudomonas putida GB-1]
 gi|166861397|gb|ABY99804.1| flagellar biosynthetic protein FlhB [Pseudomonas putida GB-1]
          Length = 380

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 187/352 (53%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +  LA    LL F      ++ S
Sbjct: 1   MAESESGQDKTEDPTEKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + +  +   +  +++ +   FLL    + A   V P L+L  +    + +     + + 
Sbjct: 61  MMRMNFSLTREVIVDERAMGAFLLASGKM-AIWAVQPVLILLFVISFVAPIALSGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S+N+L   +K+  K  ++  +  + L+ +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNSLTELLKALAKFFVILIVAVVVLSNDRQALLSIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +   D+ +  +Q + K+KM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLI 299
            +K R + + R   + +MM A  +A +IITNPTHYA+AL+Y  +    AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A K+R+I  EH I I E P+LAR+++    +   IP   Y AVAQ++  ++ 
Sbjct: 300 ALKIREIGVEHKIQILESPALARAIYYSTEVEQEIPAGLYLAVAQVLAYVFQ 351


>gi|22127347|ref|NP_670770.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10]
 gi|45442777|ref|NP_994316.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809078|ref|YP_652994.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua]
 gi|108810729|ref|YP_646496.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516]
 gi|145597798|ref|YP_001161874.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F]
 gi|150260268|ref|ZP_01916996.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162420905|ref|YP_001604864.1| flagellar biosynthesis protein FlhB [Yersinia pestis Angola]
 gi|165925101|ref|ZP_02220933.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939028|ref|ZP_02227580.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009039|ref|ZP_02229937.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212135|ref|ZP_02238170.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167398548|ref|ZP_02304072.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418875|ref|ZP_02310628.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425116|ref|ZP_02316869.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466360|ref|ZP_02331064.1| flagellar biosynthetic protein FlhB [Yersinia pestis FV-1]
 gi|218927893|ref|YP_002345768.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92]
 gi|229837389|ref|ZP_04457552.1| lateral flagellar export and assembly protein [Yersinia pestis
           Pestoides A]
 gi|229840602|ref|ZP_04460761.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842847|ref|ZP_04462999.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900926|ref|ZP_04516050.1| lateral flagellar export and assembly protein [Yersinia pestis
           Nepal516]
 gi|294502771|ref|YP_003566833.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|21960430|gb|AAM87021.1|AE013950_6 putative flagellar biosynthetic protein [Yersinia pestis KIM 10]
 gi|45437643|gb|AAS63193.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774377|gb|ABG16896.1| flagellar assembly protein [Yersinia pestis Nepal516]
 gi|108780991|gb|ABG15049.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
 gi|115346504|emb|CAL19380.1| putative flagellar assembly protein [Yersinia pestis CO92]
 gi|145209494|gb|ABP38901.1| flagellar assembly protein [Yersinia pestis Pestoides F]
 gi|149289676|gb|EDM39753.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162353720|gb|ABX87668.1| flagellar biosynthetic protein FlhB [Yersinia pestis Angola]
 gi|165912984|gb|EDR31609.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923301|gb|EDR40452.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992378|gb|EDR44679.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206881|gb|EDR51361.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962869|gb|EDR58890.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051052|gb|EDR62460.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055879|gb|EDR65660.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682265|gb|EEO78357.1| lateral flagellar export and assembly protein [Yersinia pestis
           Nepal516]
 gi|229690114|gb|EEO82171.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696968|gb|EEO87015.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705512|gb|EEO91522.1| lateral flagellar export and assembly protein [Yersinia pestis
           Pestoides A]
 gi|262360803|gb|ACY57524.1| flagellar biosynthesis protein [Yersinia pestis D106004]
 gi|262364748|gb|ACY61305.1| flagellar biosynthesis protein [Yersinia pestis D182038]
 gi|294353230|gb|ADE63571.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|320016730|gb|ADW00302.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 377

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 179/345 (51%), Gaps = 7/345 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +++   K+E P++ K+  A  +G+ P S++ ++ + ++   I LL  F P   ++ S   
Sbjct: 2   SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKALVSQSF 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           V +A    +  +  +   FLL +L + A  L    L+   +F + + LI      N   V
Sbjct: 61  VSVAQLASQLDDQGALEQFLLANLFIFAKFLAT--LIPIPLFSMLATLIPG--GWNFTPV 116

Query: 124 K--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           K  P  K++S   GIKRI+S +N    +K   K  +V   + + +  +   +L   +   
Sbjct: 117 KLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPL 176

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +   F     +L+  +  +     +DI  S+H +  K+KM+KQE+K E K + GNP 
Sbjct: 177 EEAITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPE 236

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK+R + + R     ++ +    A +IITNPTH+++AL+Y   +  AP +VAKG++ IA 
Sbjct: 237 IKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIAL 296

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +R IA +H I I E P LAR+++    +N  IP   Y+A+AQ++
Sbjct: 297 YIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVL 341


>gi|258404720|ref|YP_003197462.1| flagellar biosynthesis protein FlhB [Desulfohalobium retbaense DSM
           5692]
 gi|257796947|gb|ACV67884.1| flagellar biosynthetic protein FlhB [Desulfohalobium retbaense DSM
           5692]
          Length = 354

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 137/231 (59%), Gaps = 1/231 (0%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P  K++   +G  +  S  + +  +KS  K+ +VG++   +L++++   +  I     
Sbjct: 121 LQPDIKKLDPIQGAAKFVSKRSAMELLKSLAKVAVVGSVAYWTLSDHFEQAIQLIGQPIE 180

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I     +T  ++L+   + +  + V+D  ++  +   ++KM+K+E++DE K++ G+P +
Sbjct: 181 RIFVFIGWTAAEILLKCCIALLFIAVIDFAYTKWEMEEQMKMTKKELQDEHKETEGDPQL 240

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R +SI R   R +MM    +A ++ITNPTHYA+ALRY ++  +AP + AKG N++A++
Sbjct: 241 KQRMRSIQRDMARKRMMAEVPQADVVITNPTHYAVALRYDRSSMEAPEVTAKGSNIVAQR 300

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +R+IA E  +P+ E P +AR L   + +   +P   YKAVA+++  +Y  K
Sbjct: 301 IREIAEESGVPLVENPPVARVLHG-LELGETVPESMYKAVAEILAYVYSLK 350


>gi|226944866|ref|YP_002799939.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
 gi|226719793|gb|ACO78964.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
          Length = 402

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 179/373 (47%), Gaps = 47/373 (12%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++  +   KTEA S +++E A  EG    SRE + F  +LA +          ++S+  
Sbjct: 17  MADESSDQEKTEAASPRRLEKAREEGQVARSRELTTFLLLLAGIAA--------LWSMGG 68

Query: 61  DLHVLLASATQRKLE-------DISHIVFLLTHLS-------------LSASRLVIPGLL 100
            LH  LA   ++ L        D + ++     L              ++   LV P LL
Sbjct: 69  LLHERLAEVMEQALLFERAQAFDSARMLARFWELGEGTLFTLLPLFLLMAVVALVAPSLL 128

Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160
                  G  L+      +   ++P   R++  +G+KR++S   L    K+  K ILVG 
Sbjct: 129 -------GGLLV------SAKALQPQLARLNPLKGLKRVFSTQALAELGKAVAKSILVGW 175

Query: 161 IITISLTENYFTMLDFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW- 218
           I    L   Y   L  +S  P    L  A   +     MI+L +  +  LD+   Y  W 
Sbjct: 176 IAVFFLR-KYIDELMALSGMPIREALADAMRLMALASAMIVLGLILVVALDV--PYQLWS 232

Query: 219 -YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
              KL+MSK+E++ E K+S G+P +K R +S  ++  R +MM     A +I+TNPTHYA+
Sbjct: 233 HARKLRMSKEELRQEHKESEGDPHVKGRIRSQQQAMARSRMMSKVPTADVIVTNPTHYAV 292

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL Y   +  AP +VAKG + +A ++R++  EH +P+ E   LAR+L+  V ++  IP  
Sbjct: 293 ALSYRDGQMGAPRVVAKGADALAARIRELGGEHAVPLLEAAPLARALYYHVDLDREIPVE 352

Query: 338 FYKAVAQLIYKIY 350
            Y AVA+++   Y
Sbjct: 353 LYTAVAEVLAWAY 365


>gi|229591837|ref|YP_002873956.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens SBW25]
 gi|229363703|emb|CAY51084.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens SBW25]
          Length = 378

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 179/360 (49%), Gaps = 19/360 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  ++++A    LL +       +  
Sbjct: 1   MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGG----GLAL 56

Query: 61  DLHVLLA---SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYL 111
           DL  L+    +  +  L +   +   L H    A   V P L+  ++        +G +L
Sbjct: 57  DLMELMKHNFALPREVLLNPDAMGQYLLHSGKIAILAVQPILITLLLAALIGPVALGGWL 116

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                      + P F R++   G+KR++S   LV  +K+  K IL+  +  + L+ +  
Sbjct: 117 ------FAAGSMAPKFSRMNPGAGLKRMFSAKALVELLKALAKFILILFVALMVLSSDID 170

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            +L        S + H+   V    + +   +  +  +D      + + KL M+KQE++D
Sbjct: 171 DLLRIAHEPLESAIIHSVQVVGWSALWMAAGLIIIAAVDAPIQLWESHKKLLMTKQEVRD 230

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G P +K R + + R   + KMM +   A +IITNPTHYA+AL+Y   +  AP+L
Sbjct: 231 EHKDQEGRPEVKQRIRQLQREMSQRKMMASVPDADVIITNPTHYAVALKYDPEKGGAPML 290

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG +  A K+R+IA  H+I + E P LARS+F    ++  IP   Y AVAQ++  +Y 
Sbjct: 291 LAKGSDFTALKIREIAVAHDILLLESPELARSIFYSTDLDQEIPAGLYLAVAQVLAYVYQ 350


>gi|26991041|ref|NP_746466.1| flagellar biosynthesis protein FlhB [Pseudomonas putida KT2440]
 gi|24986073|gb|AAN69930.1|AE016632_1 flagellar biosynthetic protein FlhB [Pseudomonas putida KT2440]
          Length = 380

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 180/369 (48%), Gaps = 36/369 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFS-----------------SILAC 43
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +                   L  
Sbjct: 1   MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
           L+ + F  +  I      +   L ++ +  +  +  ++ LL  +S      V P  L   
Sbjct: 61  LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVVSF-----VAPIALSGF 115

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
           +F  GS L            +P F R++   GIKR++S+  L   +K+  K  ++  +  
Sbjct: 116 LFS-GSLL------------QPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAV 162

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
           + L+ +   +L   +      + H+   V    + +   +  +   D+ +  +Q + K+K
Sbjct: 163 VVLSGDRQALLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMK 222

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI- 282
           M+KQE++DE K S G P +K R + + R   + +MM A   A +IITNPTHYA+AL+Y  
Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDP 282

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           +    AP+L+AKG + +A K+R+I  EHNI I E P+LAR+++    +   IP   Y AV
Sbjct: 283 EKGGAAPLLLAKGSDFMALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAV 342

Query: 343 AQLIYKIYH 351
           AQ++  ++ 
Sbjct: 343 AQVLAYVFQ 351


>gi|210134972|ref|YP_002301411.1| flagellar biosynthesis protein FlhB [Helicobacter pylori P12]
 gi|210132940|gb|ACJ07931.1| flagellar biosynthetic protein [Helicobacter pylori P12]
          Length = 358

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L+     L++P L++ M+    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+      L  I++L         +D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKSKALALISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALQF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L+K V +N+AIP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYKDVKLNAAIPEELFEAVA 336


>gi|261341518|ref|ZP_05969376.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
 gi|288316316|gb|EFC55254.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
          Length = 377

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 174/341 (51%), Gaps = 3/341 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +K+E P+++K+  A  +G+ P S++ ++   +LA  I +  FF    Y    +    
Sbjct: 3   AGGDKSEKPTAQKLRKAREKGDLPRSKDLTMAVGLLASFITMGTFFP--YYKTLVEESFT 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  +L+D   +   L        R +I  L    +  I + L+    V  ++ +KP
Sbjct: 61  SVGMMAGRLDDQGALSQFLMLNVWVIIRFIIT-LAPIPLACIVASLVPGGWVFTVSKLKP 119

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK++S   G+KR++S ++ V+  K  +K  ++  ++   +  +   +L     +    +
Sbjct: 120 DFKKLSPISGVKRMFSSSHYVDVGKMMLKCGIILAVLYTMVHSSLNPLLHLQRLSLSQAI 179

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           +H F  +  VL+  +  I    +LD+  +   +  K++M+KQE+K+E K + GNP IK R
Sbjct: 180 HHGFGILHHVLVYFIAVIVIFALLDVPLAKFMFTKKMRMTKQEVKEEYKNNDGNPQIKGR 239

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + + R     ++      A +IITNPTHYA+AL+Y   + +AP +VAKG + IA  +R 
Sbjct: 240 IRQLQRQMAMGQINRTVPEADVIITNPTHYAVALKYDPKKAEAPYIVAKGMDDIALHIRD 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A  H I + E P LAR+++    +N  IP   ++A+A ++
Sbjct: 300 VARHHQIEVVEFPPLARAVYHTTRVNQQIPAQLFRAIAHVL 340


>gi|86146123|ref|ZP_01064449.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218708836|ref|YP_002416457.1| flagellar biosynthesis protein FlhB [Vibrio splendidus LGP32]
 gi|85836070|gb|EAQ54202.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218321855|emb|CAV17833.1| Flagellar biosynthetic protein flhB [Vibrio splendidus LGP32]
          Length = 376

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 184/354 (51%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  + K+++ A  +G    S+E +  S ++   I L++F      ++  
Sbjct: 1   MAESDGQE-RTEDATPKRLQQAKEKGQVARSKELASASVLIVGAIALMWFGESMAKALFE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L + + +   +    +      L      L +  + LF+   IG+  +  I   ++
Sbjct: 60  TMQRLFSLSREEVFDTTKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGIN-FSM 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFTMLDFISA 179
               P   +++   GIKR++ + + V  +KS +K+ LV G  I +     +  M   +  
Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMEV 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQEIKDE K + G 
Sbjct: 179 YPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEHKDTEGK 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q ++ APV+VAKG + +
Sbjct: 238 PEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPVVVAKGVDHM 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 298 AMKIREIARENDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351


>gi|153834147|ref|ZP_01986814.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
 gi|148869517|gb|EDL68515.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
          Length = 376

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 192/359 (53%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  ++S
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           + S L  L    T+ ++ D + +  +    ++     L +  + LF+   IG+  +  I 
Sbjct: 60  IMSRLFDL----TRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGIS 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +     P   +++   G+KR+  + + V  +KS +K+ LV T + I L +     L  
Sbjct: 116 -FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALV-TGMAIYLIQASQADLIQ 173

Query: 177 ISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
           +S +  P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQEIKDE K
Sbjct: 174 LSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G P +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + APV++AK
Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 293 GTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|21241179|ref|NP_640761.1| type III secretion system protein HrcU [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106486|gb|AAM35297.1| HrcU protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 357

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 167/340 (49%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +    S G Y  +  +  L+ 
Sbjct: 3   EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMK---SAGDY-FSDHMRALMT 58

Query: 68  SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                     D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P
Sbjct: 59  IGFDFPENTRDATAINRALGHIGIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I 
Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E+K+S G+P IK
Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A   +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  A+P   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335


>gi|325567516|ref|ZP_08144183.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158949|gb|EGC71095.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus
           ATCC 12755]
          Length = 355

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 181/358 (50%), Gaps = 30/358 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64
           D KTE PS+K++ DA   G  P ++E +   S+L     ++ L  FF+       S    
Sbjct: 5   DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLPYFSQSLA 64

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            LA   Q  L D+     L     L    L  P  L+ +  G+ +   Q   + +   +K
Sbjct: 65  QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAIK 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181
           P FK+++   GIK+ +S+ +L+N  K+  K    G I+       Y     F++A P   
Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLGKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170

Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                    +IL+      +++ + I +F+  L V+D G+  +     L MSKQE+K+E 
Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEF 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  G+P +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++A
Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG + +A++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y 
Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346


>gi|95929867|ref|ZP_01312608.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM
           684]
 gi|95134163|gb|EAT15821.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM
           684]
          Length = 353

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 8/353 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++   +TE  +SK+ ED   +G    S+E +  +++L+  + L +F+    +S  S L 
Sbjct: 3   EESGQERTEEATSKRREDFRKKGQVAQSKEVNT-AALLSLSLLLWYFYGGSFWSQLSWLV 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
                 +         +V +L  +    + L+ P  L+ ++ G  +  +Q   +     +
Sbjct: 62  SHFWEQSGSLAVTPQSVVQILLFVLQKTAVLLSPLFLMVLVVGFFASFLQIGWLFTGKPL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P   ++   +G  R  S  +LV  +KS  K+ LVG +   ++   +   L  +  +   
Sbjct: 122 MPDLTKLDPIKGAGRFVSKRSLVELVKSLAKVALVGYVAYKTVYSEFDNALYLVDMDVIE 181

Query: 184 ILYHAFFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            LY+       VL+    I++ +A L  + + W   +   K+KM+KQE K+E K+S G+P
Sbjct: 182 TLYYVGRVAMAVLMKSCGIMILLALLDFMFVRWEMEE---KMKMTKQEQKEEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +SI +   R +MM    +A ++ITNPTH ++A++Y Q E DAPV++AKG + +A
Sbjct: 239 HLKAKVRSIQQQMARRRMMAEVPKADVVITNPTHLSVAIKYEQGEMDAPVIIAKGADNLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E+++P+ E   +AR+L+K V +   +P   ++AVA+++  +Y  K
Sbjct: 299 MKIREIARENSVPLVENVDVARALYK-VEVGEVVPEQMFQAVAEILAYVYSLK 350


>gi|104782805|ref|YP_609303.1| flagellar biosynthesis protein FlhB [Pseudomonas entomophila L48]
 gi|95111792|emb|CAK16516.1| flagellar biosynthetic protein FlhB [Pseudomonas entomophila L48]
          Length = 380

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 184/357 (51%), Gaps = 12/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +  LA    LL F      ++ +
Sbjct: 1   MAESESGQDKTEEPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGQMAETLMT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM-----FGIGSYLIQRI 115
            +        +  +++ S   FLL    ++   +    +LLF++       +G +L    
Sbjct: 61  LMRANFTLTREVIVDERSMGAFLLASGKMAIWSVQPVMILLFVISFVAPIALGGFL---- 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              + + ++P F R++   GIKR++S++ L   +K+  K +++  +  + L  +   +L 
Sbjct: 117 --FSGSLLQPKFSRMNPLAGIKRMFSLHALTELLKAIAKFLVILVVALVVLASDRQALLS 174

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +      + HA   V    + +   +  +   D+ +   Q + KLKM+KQE++DE K 
Sbjct: 175 IANEPLEQAVIHAVQVVGWSALWMAAGLLLIAAADVPFQLWQAHKKLKMTKQEVRDEYKD 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAK 294
           S G P +K R + + R   + +MM A   A +IITNPTHYA+AL+Y  +    AP+L+AK
Sbjct: 235 SEGKPEVKQRIRQLQREASQRRMMAAVPEADVIITNPTHYAVALQYDPEKGGAAPLLLAK 294

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G + +A KMR+I  EH + I E P+LAR+++    +   IP   Y AVAQ++  ++ 
Sbjct: 295 GTDFLALKMREIGVEHKVQILESPALARAIYYSTELEEEIPAGLYLAVAQVLAYVFQ 351


>gi|294665988|ref|ZP_06731251.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604236|gb|EFF47624.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 357

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y  +  +  L+ 
Sbjct: 3   EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGAL---LVMKSAGDY-FSDHMRALMT 58

Query: 68  SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                     D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P
Sbjct: 59  IGFDFPENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K ++S+ +L+N +K  +K IL+G ++   +      ++      P  I 
Sbjct: 119 KFDSLNPATGVKNLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E+K+S G+P IK
Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  A+P   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335


>gi|257866393|ref|ZP_05646046.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC30]
 gi|257873091|ref|ZP_05652744.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC10]
 gi|257800351|gb|EEV29379.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC30]
 gi|257807255|gb|EEV36077.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC10]
          Length = 355

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 181/358 (50%), Gaps = 30/358 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64
           D KTE PS+K++ DA   G  P ++E +   S+L     ++ L  FF+       S    
Sbjct: 5   DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLPYFSRSLA 64

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            LA   Q  L D+     L     L    L  P  L+ +  G+ +   Q   + +   VK
Sbjct: 65  QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAVK 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181
           P FK+++   GIK+ +S+ +L+N  K+  K    G I+       Y     F++A P   
Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLGKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170

Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                    +IL+      +++ + I +F+  L V+D G+  +     L MSKQE+K+E 
Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEF 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  G+P +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++A
Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG + +A++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y 
Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346


>gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile ATCC 43255]
          Length = 604

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 1/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + KK  +   +GN   S+E  +  ++LA  + +   FS  + ++ S L+  L+ 
Sbjct: 253 DKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSL 312

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                +   S    ++T L +   ++ +P  + F++ GI + L Q   +     +KP+  
Sbjct: 313 DFYMNINYSSIEKLVITGL-MDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKPNLS 371

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++Y  
Sbjct: 372 KLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTV 431

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P IK + K 
Sbjct: 432 KDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAKIKQ 491

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+IA 
Sbjct: 492 KQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAK 551

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 552 GNEIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596


>gi|285018167|ref|YP_003375878.1| flagellar biosynthesis pathway component flhb protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473385|emb|CBA15890.1| probable flagellar biosynthesis pathway component flhb protein
           [Xanthomonas albilineans]
          Length = 376

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 182/362 (50%), Gaps = 23/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGI-- 55
           MSEN+    +TE P+ K++ +   +GN P SRE   A++FSS +  L+ +    + G   
Sbjct: 1   MSENEEGAERTEQPTEKRLRETREQGNIPRSRELATAAVFSSSIFALMGMSGSLTAGAVA 60

Query: 56  ---YSVTSDLHVLLASATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
              +++  D H          L D    +F     L +    +V+P + + +  G  + L
Sbjct: 61  WMKHALQPDPH----------LRDTPQALFGYFGDLLIGLFWVVLPLIGICVAAGFIAPL 110

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
           +      +   + P   R++   G+ R+Y   +LV  +KS +++  VG    + + +   
Sbjct: 111 LMGSLRFSGQALIPKLDRLNPMAGLARLYGTESLVELLKSMLRMGFVGGAAFLCIWKGLD 170

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEI 229
            +   +       + H       +L+     +A L  +D    Y +W+  +KLKM+++E+
Sbjct: 171 GLRGLLQQPLEQAIGHGLGFTLSMLLYTAGALALLAAIDA--PYQKWHYINKLKMTREEV 228

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           + E+K++ G+P +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y      AP
Sbjct: 229 RREMKENDGSPEVKGRIRQMQMQMSQRRMMEAVPKADVVVVNPTHYAVALKYESGRMRAP 288

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            ++AKG + IA ++R++  +H + +   P LAR+L+++  +   IP   Y AVAQ++  +
Sbjct: 289 TVLAKGVDEIAFRIREVGEQHRVAVVSAPPLARALYREGQLGKEIPVRLYSAVAQILSYV 348

Query: 350 YH 351
           Y 
Sbjct: 349 YQ 350


>gi|320187319|gb|EFW62016.1| Flagellar biosynthesis protein FlhB [Shigella flexneri CDC 796-83]
          Length = 341

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 140/237 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 73  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 132

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 133 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 192

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 193 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 252

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  I+  K
Sbjct: 253 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 309


>gi|74311773|ref|YP_310192.1| flagellar biosynthesis protein FlhB [Shigella sonnei Ss046]
 gi|73855250|gb|AAZ87957.1| putative part of export apparatus for flagellar proteins [Shigella
           sonnei Ss046]
          Length = 323

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 140/237 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 55  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRL 114

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 115 MAESPTTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 174

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 175 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 234

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 235 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 291


>gi|323165329|gb|EFZ51117.1| flagellar biosynthetic protein FlhB [Shigella sonnei 53G]
          Length = 319

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 140/237 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 51  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRL 110

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 111 MAESPTTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 170

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 171 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 230

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 231 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 287


>gi|110615403|gb|ABF04070.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 5 str. 8401]
          Length = 358

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 139/237 (58%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 75  VFSGKSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRL 134

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 135 MAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 194

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 195 EGDPHVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 254

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 255 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 311


>gi|82543640|ref|YP_407587.1| flagellar biosynthesis protein FlhB [Shigella boydii Sb227]
 gi|81245051|gb|ABB65759.1| putative part of export apparatus for flagellar proteins [Shigella
           boydii Sb227]
          Length = 343

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 139/237 (58%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 75  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 134

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 135 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 194

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 195 EGEPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 254

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  I+  K
Sbjct: 255 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 311


>gi|156975417|ref|YP_001446324.1| flagellar biosynthesis protein FlhB [Vibrio harveyi ATCC BAA-1116]
 gi|156527011|gb|ABU72097.1| hypothetical protein VIBHAR_03148 [Vibrio harveyi ATCC BAA-1116]
          Length = 376

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 192/359 (53%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  ++S
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           + S L  L    T+ ++ D + +  +    ++     L +  + LF+   IG+  +  I 
Sbjct: 60  IMSRLFDL----TRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGIS 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +     P   +++   G+KR+  + + V  +KS +K+ LV T + I L +     L  
Sbjct: 116 -FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALV-TGMAIYLIQASQADLIQ 173

Query: 177 ISAN--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
           +S +  P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K
Sbjct: 174 LSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G P +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + APV++AK
Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 293 GTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|148976426|ref|ZP_01813132.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3]
 gi|145964249|gb|EDK29505.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3]
          Length = 376

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 190/361 (52%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++  
Sbjct: 1   MAESDGQE-RTEDATPRRLQQAKEKGQVARSKELASASVLIVGAVALMWFGESMAKALFE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV-------IPGLLLFMMFGIGSYLIQ 113
            +  L  S ++ ++ D + +      L ++   LV       +  + LF+   IG+  + 
Sbjct: 60  AMQRLF-SLSRDEIFDTNKL------LEIAGGALVNLLFPLFLILITLFIAAVIGAAGVG 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFT 172
            I   ++    P   +++   GIKR++ + + V  +KS +K+ LV G  + +     +  
Sbjct: 113 GIN-FSMQAAMPKASKLNPLSGIKRMFGLQSWVELIKSILKVALVSGMAVYLIQASQHDL 171

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           M   +   P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE
Sbjct: 172 MQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q ++ AP++V
Sbjct: 231 FKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  
Sbjct: 291 AKGVDHMAMKIREIAREHDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|325273555|ref|ZP_08139785.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51]
 gi|324101315|gb|EGB98931.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51]
          Length = 380

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 180/369 (48%), Gaps = 36/369 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASL-----------------FSSILAC 43
           M+E+++  +KTE P+ K+  D+  +G    S+E +                   +  L  
Sbjct: 1   MAESESGQDKTEDPTEKRKRDSREKGEVARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
           L+ + F  +  I      +   L ++ +  +  +  ++ LL  +S      V P  L   
Sbjct: 61  LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISF-----VAPIALSGF 115

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
           +F  GS L            +P F R++   GIKR++S++ L   +K+  K  ++  +  
Sbjct: 116 LFS-GSLL------------QPKFSRMNPLSGIKRMFSMHALTELLKALAKFFVILVVAV 162

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
           + L  +   +L   +      + H+   V    + +   +  +   D+ +  +Q + KLK
Sbjct: 163 VVLINDRQALLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKLK 222

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M+KQE++DE K S G P +K R + + R   + +MM A  +A +IITNPTHYA+AL+Y  
Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDP 282

Query: 284 TEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
            +   AP+L+AKG + IA K+R+I  EH + I E P+LAR+++    I   IP   Y AV
Sbjct: 283 EKGGVAPLLLAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAV 342

Query: 343 AQLIYKIYH 351
           AQ++  ++ 
Sbjct: 343 AQVLAYVFQ 351


>gi|77359754|ref|YP_339329.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874665|emb|CAI85886.1| Flagellar biosynthetic protein flhB, putative part of export
           apparatus for flagellar proteins [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 376

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 184/361 (50%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFF--FSPGIYS 57
           MSE D+   KTE P+SKK+EDA  +G    S+E  ++F  I + +  L++      G+Y+
Sbjct: 1   MSE-DSGQEKTEEPTSKKVEDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V   +     S  + +  D + +  +   +   A  L+ P + +F++  + +  I    +
Sbjct: 60  VMGRM----LSLNRNETYDTTKMFAVWGEV---ADALMFP-MAMFVLIIVLAAFIGNTML 111

Query: 118 LNLN----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              N       P   ++S  +G KR++     V  +KS +K  LV +     +   +  +
Sbjct: 112 GGFNFSWQAAAPKASKMSPAKGFKRMFGPQAGVELLKSLLKFGLVASFAVFLINTFFDEI 171

Query: 174 LDF-ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           L   + + P +I+ HA   +  + + +   +  +  +D  +  +    +LKM+ QE+KDE
Sbjct: 172 LHLSVESAPGNII-HALEILAWMFLGLSCTLIIIAAIDAPFQSYNHNKQLKMTLQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K S G+P IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP++V
Sbjct: 231 YKNSEGDPQIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A ++RKIA  + +PI E PSL R+L+    +   IP   + AVAQ++  ++  
Sbjct: 291 AKGIDEMAMQIRKIAIGNEVPILESPSLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|331657929|ref|ZP_08358891.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206]
 gi|331056177|gb|EGI28186.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206]
          Length = 345

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 140/237 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 77  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 136

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 137 MAESPLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 196

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 197 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 256

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 257 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 313


>gi|320177410|gb|EFW52411.1| Flagellar biosynthesis protein FlhB [Shigella dysenteriae CDC
           74-1112]
          Length = 324

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 140/237 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 56  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 115

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 116 LAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 175

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 176 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 235

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  I+  K
Sbjct: 236 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 292


>gi|212702654|ref|ZP_03310782.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098]
 gi|212673926|gb|EEB34409.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098]
          Length = 347

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 183/342 (53%), Gaps = 11/342 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS--DLHVLL 66
            KTE P+ K++ D+  +G    S++     +++A  +YLL   S  + ++ +  +  +LL
Sbjct: 4   EKTEQPTPKRLRDSREKGQVAKSQDVPSALTVMAVAVYLLAMSSDMLNTMQTMGEAPMLL 63

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                R  E+   +   +T   L A R+ +P + + M+  + + L+Q   + ++    P 
Sbjct: 64  MD---RPFEE--ALPLAVTSTLLCALRVALPLIGMVMVVALCANLMQVGVLFSVQAAMPK 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + +S+ +  K+++S+ NLV F+K+ +K++++G  + +  + +Y   L  I       ++
Sbjct: 119 LENLSMNKWFKQVFSLKNLVEFLKNIIKVLILGISVYVIFS-DYMPQLFRIPQGDIGDMW 177

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKN 244
               +V   L+++   +  + +    W + +W    +  MSK+E+K E K+S G+P+IK 
Sbjct: 178 RLLGSVCGDLVLVSAGVFCV-IAAADWCFQRWQFNKQHMMSKEEVKREFKESEGDPLIKG 236

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           ++K + +  I    +    +A +++TNPTH+A+AL Y +     PV++AKGQ ++A++M 
Sbjct: 237 KRKQLHQEMIAQNQIANVRKAKVLVTNPTHFAVALDYEKDRTPLPVILAKGQGVLAQRMI 296

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + A E  IPI     LARSL++Q   N+ IP      VA+++
Sbjct: 297 ETAREEGIPIMRNVPLARSLYEQGTENAYIPQDLIGPVAEVL 338


>gi|22034295|gb|AAL01537.1| FlhB [Escherichia fergusonii]
          Length = 381

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 181/362 (50%), Gaps = 23/362 (6%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            END+   KTE P+  + + A  EG  P SRE +  S +LA    LL     G Y     
Sbjct: 3   EENDS--EKTEDPTPHRKQKAREEGQVPRSRELTSLSMLLAGWGLLLVG---GNYLAKQL 57

Query: 62  LHVLLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR----- 114
            H+L    T  +L   D  H   +L H    A+ L+    L  + F +G   I       
Sbjct: 58  QHLLHNGLTFDRLLVSDPQH---MLHH----AAALLGMAFLAILPF-VGGLFITALVTPS 109

Query: 115 -IPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
            I  LN++   +K + K+++   GIKR++S   +   +KS +K++L G    + L  N  
Sbjct: 110 IIGGLNMSAKAIKFNLKKLNPLSGIKRLFSGQMVSEMVKSILKVLLAGIGGGLFLWLNKA 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             ++ I       L      +   +++I+L +  +   D+ +     + KL+MS +EIKD
Sbjct: 170 KFINLIFEPLGMALADISALLIGCMLVIILSLIPMVAFDVIYQLWSNFKKLRMSLKEIKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G+P IK R + + R   + +MM     A +++ NPTHY++AL+Y +    AP++
Sbjct: 230 EFKNQEGDPQIKARVRQLQRQMAQQRMMTDVPTADVVVNNPTHYSVALKYQEGAMGAPMV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VA G  LIA ++R++A E+ +P+ E P LAR+L++     + +P   Y AVA+++  +Y 
Sbjct: 290 VASGSGLIALRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYG 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|312883875|ref|ZP_07743592.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368333|gb|EFP95868.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 350

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 185/343 (53%), Gaps = 13/343 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E  + S+++  L+ +LF FS    S  S L +L + 
Sbjct: 4   EKTELPTPKKLRDARQKGQVAKSQEV-VSSTLILALVAVLFAFSDYYMSHISALMLLPSK 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   +V +   ++     L+ P LL+ ++  I S + Q   + + + VKP  K
Sbjct: 63  LAYQGFQD--ALVDVAIAMAEEIIYLLAPILLVTVLVTIVSNMGQFGLLFSAHSVKPEIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +LV+F+KS +K+ L+  II I+L  N  T+L+     P+  L + 
Sbjct: 121 KINPAEGAKRIFSMKSLVDFIKSILKVSLLSCIIWITLKGNLNTLLNI----PNCGL-NC 175

Query: 189 FFTVRKVLIMILLFIATL-----TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
              +  VL+  L+FI+ +       +D  +  ++   +LKMSK E+K E K+  G+P IK
Sbjct: 176 VPIITGVLVQQLMFISAIGFIIIAAVDYAYQKYEHTKQLKMSKDEVKREYKEMEGSPEIK 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           + ++   +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +AK+M
Sbjct: 236 SARRQFHQELQSSTQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRM 295

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             +A E  IP+ ++  LAR+L+    ++  IP    +A A+++
Sbjct: 296 IALAREEGIPVMQKVPLARALYADGQLDQYIPGELIEATAEIL 338


>gi|255024132|ref|ZP_05296118.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-208]
          Length = 288

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 159/292 (54%), Gaps = 5/292 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQAFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L     +     S+ +F +        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPKLANMESYSLFYVMEFG----KVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGED 288


>gi|253573537|ref|ZP_04850880.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847065|gb|EES75070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 363

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 189/357 (52%), Gaps = 25/357 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDL--H 63
            KTE  + KK ++A  +G    S+E   A L  +   CL     +F   +  +  D+  H
Sbjct: 15  EKTEKATPKKRQEARKKGQVAKSQELTGALLLMAGFLCLTAFAGYFKDRLIGLFVDVFYH 74

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L    T+      ++++ ++   ++    L+ P  L+ ++  + +   Q   +L    +
Sbjct: 75  RLSMEVTK------TNVMAMMGEYAVQVLLLLAPIFLVVIVVAVVANYAQIGFMLVGEPL 128

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF---ISAN 180
           K  F ++   +G K I+S+ +LV F+K+  K++++G ++       Y T+  +   +SA 
Sbjct: 129 KIKFSKLDPIKGFKNIFSMRSLVQFVKTLFKLLIIGYLV-------YSTIWGYRGSLSAL 181

Query: 181 PHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            H  +   F    ++ + + L IA     L VLD  +  ++    LKMSKQ+IKDE K+ 
Sbjct: 182 GHVSVDDTFHFTAQLTMNLGLKIAAALIVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKM 241

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P+IK + +   R     +MM+   +A +IITNPTH+A+AL+Y  ++ DAP ++AKGQ
Sbjct: 242 EGDPLIKGKIRERQRRMALQRMMQEVPKADVIITNPTHFAVALKYDGSKMDAPQVIAKGQ 301

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A ++++IA EH +   E   LAR+LF++  I   IP   ++AVA+++  +Y  K
Sbjct: 302 DYVALRIKEIAKEHGVITMENKPLARALFQRTEIGDTIPADLFQAVAEVLAYVYRIK 358


>gi|219854407|ref|YP_002471529.1| hypothetical protein CKR_1064 [Clostridium kluyveri NBRC 12016]
 gi|219568131|dbj|BAH06115.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 609

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 198/356 (55%), Gaps = 18/356 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--------S 57
           A D+KTE  + +K  DA  +G  P S+E +L  ++LA  + +L   + G Y         
Sbjct: 264 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVIL---ALGGYVGSQVKTTM 320

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +T   + L+ S     ++ I+ I   L  L++    + +P L++    G+ +   Q   +
Sbjct: 321 ITFFNNYLVMSLDYASVQKITFIT--LWRLAIIFLPVAVPILVM----GVLANFFQTRGL 374

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           +  + +KP F +++   G KR++S+ +++  +KS   I +VG I    + +NY  ++   
Sbjct: 375 VTSHPLKPDFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLS 434

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S N  SI+         +   + + +  + ++D  +   Q+   L+MSKQE+K+E KQ  
Sbjct: 435 SLNFESIVKAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDE 494

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK++ K   R     +MM+   +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+
Sbjct: 495 GDPQIKSKIKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQD 553

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A +++K+A + ++PI E P LAR ++K+V ++  IP   Y+AVA+++  +Y  +
Sbjct: 554 LVALRIKKVAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 609


>gi|153953791|ref|YP_001394556.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           kluyveri DSM 555]
 gi|146346672|gb|EDK33208.1| Fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium kluyveri DSM 555]
          Length = 606

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 198/356 (55%), Gaps = 18/356 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--------S 57
           A D+KTE  + +K  DA  +G  P S+E +L  ++LA  + +L   + G Y         
Sbjct: 261 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVIL---ALGGYVGSQVKTTM 317

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +T   + L+ S     ++ I+ I   L  L++    + +P L++    G+ +   Q   +
Sbjct: 318 ITFFNNYLVMSLDYASVQKITFIT--LWRLAIIFLPVAVPILVM----GVLANFFQTRGL 371

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           +  + +KP F +++   G KR++S+ +++  +KS   I +VG I    + +NY  ++   
Sbjct: 372 VTSHPLKPDFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLS 431

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S N  SI+         +   + + +  + ++D  +   Q+   L+MSKQE+K+E KQ  
Sbjct: 432 SLNFESIVKAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDE 491

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK++ K   R     +MM+   +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+
Sbjct: 492 GDPQIKSKIKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQD 550

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A +++K+A + ++PI E P LAR ++K+V ++  IP   Y+AVA+++  +Y  +
Sbjct: 551 LVALRIKKVAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 606


>gi|157738150|ref|YP_001490834.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018]
 gi|315636293|ref|ZP_07891543.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22]
 gi|157700004|gb|ABV68164.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018]
 gi|315479382|gb|EFU70065.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22]
          Length = 349

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 188/351 (53%), Gaps = 14/351 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+SKK+EDA NEGN   S E    S +    I+LLFF    +  +   L +L  
Sbjct: 5   EEKTEEPTSKKLEDAKNEGNVSKSMEVVGASILTFGSIFLLFFSGSSMLEIKK-LMMLSY 63

Query: 68  SATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQ----RIPVLNLNH 122
           +   ++++    + + +T+ + ++  + + P  +L ++ G+     Q     IP+     
Sbjct: 64  NFIGQEMD--GPLYYAITYTVVITLLKALAPLFILVILLGLVGNWAQFGFISIPL----- 116

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            K   +++   +G+K I+ +  L+  +K  +K+ ++ T++ I  +  Y   L  ++    
Sbjct: 117 -KFDLQKLDPIKGLKNIFGLKKLLEALKLSLKLAIIITVMFIIFSLTYNEFLAMMNKETM 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           + +          +  IL  I    ++D  +S + +   LKMSKQEIKDE K   G+P +
Sbjct: 176 ATISSMLQLTIYFIFTILFIIIIFAIMDFYFSKYYYMKSLKMSKQEIKDEYKNMEGDPQV 235

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R + I     + +MM     A ++ITNPTHYA+AL+Y    N APVLVAKG + +A K
Sbjct: 236 KGRIRRIQMQMAQKRMMGNVPNADVVITNPTHYAVALKYDNKVNSAPVLVAKGIDFLALK 295

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ IA E+N+ I E P+LAR+L+ Q+ ++  IP  FYKA+A++   +Y  K
Sbjct: 296 IKDIAKENNVTIIENPALARALYDQIEVDKEIPNQFYKAIAEIFSYLYELK 346


>gi|297516775|ref|ZP_06935161.1| flagellar biosynthesis protein FlhB [Escherichia coli OP50]
          Length = 345

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 140/237 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  
Sbjct: 77  VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRL 136

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS
Sbjct: 137 MAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 196

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG 
Sbjct: 197 EGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGA 256

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 257 GLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 313


>gi|56460295|ref|YP_155576.1| flagellar biosynthesis protein FlhB [Idiomarina loihiensis L2TR]
 gi|56179305|gb|AAV82027.1| Flagellar biosynthesis proten FlhB [Idiomarina loihiensis L2TR]
          Length = 375

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    +TE P+ ++ + A ++G    S+E      +L       F+F   +Y    
Sbjct: 1   MAETD--QERTEDPTERRKQQARDKGQIARSKEMGT-GFVLVSAAVSFFWFGGALYQGVR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLN 119
           ++  ++ +  ++   D S    +    +++   ++ P L +F    + ++L    +  +N
Sbjct: 58  NVFEIMFTLDRQHAFDTSK---MYEAFAIAFGEILWPILTIFAFIVVFTFLGNSWLGGIN 114

Query: 120 LNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P F R++   G KR++ +  LV  +K+  K ++V       L   +  +L   
Sbjct: 115 FSAQAMAPKFNRMNPLNGFKRMFGVQALVELIKAIAKFMVVAVSAYFLLKWKFVDILQMS 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                +++ +A  T+  + +++ L I  + V+D  +   +    LKMSKQE+KDE K + 
Sbjct: 175 MGQMPTMIENALDTLLWMFLLLCLSIFLIVVIDAPFQVWKHNKDLKMSKQEVKDEHKDTE 234

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + +       +MM+   +A +++TNPTHYA+AL+Y      APVL+AKG +
Sbjct: 235 GSPEVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHYAVALKYDDGGVQAPVLLAKGTD 294

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A K+R+IA E+ IP+   P LARS++    +   IP   + AVAQ++  +Y 
Sbjct: 295 ETAAKIREIALEYEIPLVASPGLARSIYHTTELEKEIPKGLFVAVAQILAYVYQ 348


>gi|226939714|ref|YP_002794787.1| FlhB1 [Laribacter hongkongensis HLHK9]
 gi|226714640|gb|ACO73778.1| FlhB1 [Laribacter hongkongensis HLHK9]
          Length = 389

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 177/357 (49%), Gaps = 15/357 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TE  + ++ E A  EG  P SRE + F+  +   + +L  +   +Y    
Sbjct: 1   MAE-DSDLERTEEATPRRREQAREEGQVPRSRELATFTVTMTG-VAMLVAYGGVLYQQLK 58

Query: 61  DLHVLLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----IGSYLIQR 114
           +L     + T+  L  ED + +           S L I G+L  +       IG +    
Sbjct: 59  ELFARTLTFTRATLDAEDAAQLALRGGLTDGLVSILPILGVLFVLALVTPALIGGW---- 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              L+   V+P F +++   GIKRI+S+   +   K+ +K +L+G + T  +      ++
Sbjct: 115 --NLSWKAVEPKFSKINPLSGIKRIFSVQGAIEGAKAILKSLLIGGVATWVIWNERAELV 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                +    L  A       L+++   +  L ++D+ +   Q+   L+M+K+++K E+K
Sbjct: 173 SLTRLSLDQALARAVDLTLHTLLIVAGAMVLLVLIDVPFQLWQYSKNLRMTKEDVKKEMK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +S G+P +K R + + R   R +MM     A+++ITNPTHYA+ALRY +    AP ++AK
Sbjct: 233 ESEGSPEVKGRIRQLQREAARRRMMSDVPNASVVITNPTHYAVALRY-EDGMAAPKVIAK 291

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G   +A+++ ++A E+ + I   P  AR+L+    I   IP   Y A AQ++  ++ 
Sbjct: 292 GSMKVAERIIELARENRVTILRAPPFARALYFNSEIGDDIPAALYSAAAQVLAYVFQ 348


>gi|84388124|ref|ZP_00991020.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
 gi|84377191|gb|EAP94061.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
          Length = 376

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 190/361 (52%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  + K+++ A  +G    S+E +  S ++   I L++F      ++  
Sbjct: 1   MAESDGQE-RTEDATPKRLQQAKEKGQVARSKELASASVLIVGAISLMWFGESMAKALFE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV-------IPGLLLFMMFGIGSYLIQ 113
            +  L  S ++ ++ D + +      L ++   LV       +  + LF+   IG+  + 
Sbjct: 60  AMQRLF-SLSRDEIFDTNKL------LEIAGGALVNLLFPLFLILITLFVAAVIGAAGVG 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFT 172
            +   ++    P   +++   GIKR++ + + V  +KS +K+ LV G  I +     +  
Sbjct: 113 GVN-FSMQAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDL 171

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           M   +   P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE
Sbjct: 172 MQLSMDVYPQNI-FHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q ++ AP++V
Sbjct: 231 FKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  
Sbjct: 291 AKGVDHMAMKIREIARENDIYIIPAPPLARALYHTTELEQQIPDGLFAAVAQVLAYVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|257871304|ref|ZP_05650957.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2]
 gi|257805468|gb|EEV34290.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2]
          Length = 355

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 180/358 (50%), Gaps = 30/358 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILA---CLIYLLFFFSPGIYSVTSDLHV 64
           D KTE PS+K++ DA   G  P ++E +   S+L      + L  FF+       S    
Sbjct: 5   DGKTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLTLSLWQFFAASFLPYFSRSLA 64

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            LA   Q  L D+     L     L    L  P  L+ +  G+ +   Q   + +   VK
Sbjct: 65  QLAD-YQTSLADLPK---LGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSGKAVK 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--- 181
           P FK+++   GIK+ +S+ +L+N  K+  K    G I+       Y     F++A P   
Sbjct: 121 PDFKKLNPISGIKQQFSLRSLMNLGKTLAKF---GVIV-------YLCYQQFLAAVPVLL 170

Query: 182 --------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                    +IL+      +++ + I +F+  L V+D G+  +     L MSKQE+K+E 
Sbjct: 171 GLSEVGLEKTILFM-LLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEF 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           KQ  G+P +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++A
Sbjct: 230 KQMEGDPQVKAQRKAKYRAMTQNAIAN-VKEATVLITNPTHFAIAIRYDASSEGVPRVLA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KG + +A++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y 
Sbjct: 289 KGADQLAQRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQ 346


>gi|292489168|ref|YP_003532055.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|292900286|ref|YP_003539655.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291200134|emb|CBJ47260.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291554602|emb|CBA22250.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|312173327|emb|CBX81582.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 381

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 180/356 (50%), Gaps = 19/356 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI-YLLFFFSPG--IYSVTS 60
            ++ + KTEAP+  +I  A  EG  P SRE    +++L  L+ + L   S G  + S+  
Sbjct: 3   QESDNEKTEAPTPSRIARAREEGQIPRSRE---LTTLLMLLVGWGLMLCSGGNLVRSLQG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL------VIPGLLLFMMFGIGSYLIQR 114
            LH  L       + D   I+     L  SAS L      ++P +   ++  + +  +  
Sbjct: 60  LLHNGL-------IFDRLLILDPAQMLQRSASLLGQAFMAIMPFVFGLLLTAVSAPPLIG 112

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             +L+   + P  K+++   GIKR++S       +K+ +K++L      + L  N    +
Sbjct: 113 GLILSGKSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFI 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             I       L      +   L+ +++ +  +   D+ +  +  + KL+MS+QEIKDE K
Sbjct: 173 RLIFEPLGMALTDISSLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P IK R + + R+  + +MM     A +I+ NPTHY++AL+Y      AP +VAK
Sbjct: 233 KQEGDPQIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           G  L+A ++R++A  H +P+ E P LAR+L++   I + IP   Y AVA+++  +Y
Sbjct: 293 GSGLVALRIRELAESHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVY 348


>gi|15607000|ref|NP_214382.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5]
 gi|6225349|sp|O67813|FLHB_AQUAE RecName: Full=Flagellar biosynthetic protein flhB
 gi|2984250|gb|AAC07777.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5]
          Length = 350

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 190/351 (54%), Gaps = 9/351 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A ++KTE  +  K      EGN   S E +    +L  L+ LL     G Y +  ++ ++
Sbjct: 2   AEEHKTERATPYKRRKVREEGNVAKSHEIASSLVVLLSLLLLL---FLGTY-IAKEVILI 57

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             + T     DIS +  L  +   +  +++ P   L ++  I S++ Q   +  L  +  
Sbjct: 58  FLAVTGYVHADISELGSLYENFYENIVKVLTPLFFLALLVVILSHVAQFGFIFTLKPLSF 117

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVK-IILVGTIITISLTENYFTMLDFISANPHSI 184
            ++R++  EGIKR+ S+  L   +K+ +K  +L+G  + +     YF +    S  P + 
Sbjct: 118 KWERINPFEGIKRLISLTTLFETVKNTLKAFLLIGIAVFVLKGSLYFFLSS--STYPLAE 175

Query: 185 LYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
              +F     + ++ L  +A L   LD  +   Q+  K+ MS++E+K+E KQ  G+P +K
Sbjct: 176 TLKSFIKTSAITLITLGVVALLIAFLDYAFKRWQYEKKIMMSRRELKEEYKQLEGHPEVK 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +R K+  R   + +MM    +AT++ITNPTH A+AL+Y   ++ APV+VAKG+  IA+K+
Sbjct: 236 SRIKARMRELAKSRMMAEVPKATVVITNPTHIAIALKYNPEKDKAPVVVAKGKGTIAQKI 295

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI-YKIYHKK 353
            +IA  ++IP+  +P LAR+L+  V +   I P FYKAVA++I Y ++ KK
Sbjct: 296 VEIAENYSIPVVRKPELARALYPAVEVGKEISPKFYKAVAEIIAYVMFKKK 346


>gi|296103646|ref|YP_003613792.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058105|gb|ADF62843.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 381

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 188/365 (51%), Gaps = 26/365 (7%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MSE ND+   KTE P+  + + A  EG  P SRE    +S+L  L         G +   
Sbjct: 1   MSEQNDS--EKTEDPTPHRKQKAREEGQVPRSRE---LTSLLMLLAGWGLLLVAGGWLAK 55

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-----QR 114
             LH+L    T  +L  +S    +L H    A  L+    L  + F  G +L        
Sbjct: 56  QLLHLLHNGLTFDRLL-VSDPQQMLHH----AGSLLGMAFLALLPFVGGLFLTAVATPSL 110

Query: 115 IPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           I  LN++   +K + K+++   GIKR++S   +   +KS +K+ L G    + L   +F 
Sbjct: 111 IGGLNMSAKALKFNVKKLNPISGIKRLFSAQMVSEMVKSILKVTLAGIGGGLFL---WFN 167

Query: 173 MLDFISANPHSILYHAFFTVRKVLI--MILLFIATLTVLDIGWSYHQW--YSKLKMSKQE 228
              FIS   +  L  A   +  +L+  M+++ ++ + ++     Y  W  + KL+MS +E
Sbjct: 168 KGKFISLM-YEPLRMALGDISALLMGCMLVIILSLIPMVAFDVVYQLWSNFKKLRMSLKE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           IKDE K   G+P+IK++ + + R   + +MM     A +++ NPTHY++AL+Y +    A
Sbjct: 227 IKDEFKNQEGDPLIKSKVRQLQRQMAQQRMMSDVPTADVVVNNPTHYSVALKYQEGAMGA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P++VA G  LIA ++R++A E+ +P+ E P LAR+L++     + +P   Y AVA+++  
Sbjct: 287 PMVVASGSGLIALRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAW 346

Query: 349 IYHKK 353
           +Y  K
Sbjct: 347 VYGLK 351


>gi|153947127|ref|YP_001399615.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           31758]
 gi|152958622|gb|ABS46083.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP
           31758]
          Length = 377

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 179/345 (51%), Gaps = 7/345 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +++   K+E P++ K+  A  +G+ P S++ ++ + ++   I LL  F P    + S   
Sbjct: 2   SNSSGEKSEKPTTGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKELISQSF 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           V ++    +  +  +   FLL +L + A  L    L+   +F + + LI      N   V
Sbjct: 61  VSVSQLASQLNDQGALEQFLLANLFIFAKFLAT--LVPIPLFSMLATLIPG--GWNFTPV 116

Query: 124 K--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           K  P  K++S   GIKRI+S +N    +K   K  +V   + + +  +   +L   +   
Sbjct: 117 KLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPL 176

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +   F     +L+  +  +    ++DI  S+H +  K+KM+KQE+K E K + GNP 
Sbjct: 177 EEAITQGFAQYHHILLYFIAIVVVFAIIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPE 236

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK+R + + R     ++ +    A +IITNPTH+++AL+Y   +  AP +VAKG++ IA 
Sbjct: 237 IKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIAL 296

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +R IA +H I I E P LAR+++    +N  IP   Y+A+AQ++
Sbjct: 297 YIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVL 341


>gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium butyricum 5521]
 gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium butyricum 5521]
 gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 612

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 183/342 (53%), Gaps = 2/342 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  D+  +G    S++ S+  +++ C I +   ++  I      +   
Sbjct: 264 ASDDKTEEATPKKKSDSRKKGQIARSKDVSVALTMVVCTIAVSACWNMMINGFKEVMIYF 323

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L        + +S    L+T +   A  L +P  L  M+ GI + L+Q   ++    +KP
Sbjct: 324 LQLPMLDNFDKLSLTGILITVIMRVAYGL-LPIALPIMVGGIIASLMQTGFLITGEPLKP 382

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           SFK+++   GIK + S  ++V+  K+ V I +V  I    ++ NY  ++   +    S+ 
Sbjct: 383 SFKKLNPLSGIKNMISKRSIVDLCKNLVVISIVSIISYRYISSNYQKIISMSNIYIPSLN 442

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 V  +   I + +  +  +D    +      LKM+KQE+KDE KQ  G+P +K +
Sbjct: 443 VEIKTLVLDIFKQICIALIVIAAIDYFVQFKMHNKDLKMTKQEVKDEYKQQEGDPQLKGK 502

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMR 304
            K   R   R +MM++ S AT++ITNPTH A+AL+Y + T+ +AP ++AKG + +A K++
Sbjct: 503 IKQKQREMSRQRMMQSVSDATVVITNPTHLAIALKYEEGTDMEAPKVLAKGTDYLALKIK 562

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            IA E+ IPI E   LAR ++ +V I++ IPP  Y+ VA+++
Sbjct: 563 SIAKENEIPIIENKPLARMMYDKVEIDNDIPPELYQGVAEIL 604


>gi|163801858|ref|ZP_02195755.1| flagellar biosynthesis protein B [Vibrio sp. AND4]
 gi|159174366|gb|EDP59170.1| flagellar biosynthesis protein B [Vibrio sp. AND4]
          Length = 376

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 193/359 (53%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           MSE+D  + +TE  + K+++ A  +G    S+E +  S ++   I L++F    +  +++
Sbjct: 1   MSESDGQE-RTEDATPKRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFA 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           + S L  L    T+ ++ D + +  +    ++     L +  + LF+   IG+  +  + 
Sbjct: 60  IMSRLFDL----TRDEIFDTAKLFDIAFGAMADLLFPLFLILITLFIAALIGAAGVGGVS 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG--TIITISLTENYFTML 174
             +     P   +++   G+KR+  + + V  +KS +K+ LV    I  I  +++    L
Sbjct: 116 -FSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVGLVAGMAIYLIQASQSDLIQL 174

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +   P +I +HA  T+   +++I   +  +  +DI +   Q  ++LKM+KQEIKDE K
Sbjct: 175 S-MDVYPQNI-FHALDTLLNFILLISCSLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           ++ G P +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + AP+++AK
Sbjct: 233 ETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPIVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A K+R++A E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 293 GTDHMAMKIREVARENDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|149189857|ref|ZP_01868137.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
 gi|148836343|gb|EDL53300.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
          Length = 375

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 186/348 (53%), Gaps = 6/348 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58
           MSE  + D KTE  S +KI+ A  EG  P ++E   F++ +  LI  ++F+S    I+  
Sbjct: 1   MSEQSSQD-KTEKASPQKIKKARQEGQIPRAKE---FTTAVLFLIVAIYFYSQIGRIWEH 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            S +     + T++ LE+   ++  L         L++P  ++ ++  IGS +I    + 
Sbjct: 57  ISGVFRFNMALTRQDLENPKQMIEQLGQSLGIIIELLLPMFMVIVIAAIGSSMILGGWMF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              +++P   +++   G+ R++S  +LV  +KS +K+ ++  ++   L  N+  +L    
Sbjct: 117 RPANIQPKLSKLNPISGVGRMFSTRSLVELLKSSLKVTVIFALLYTYLDSNFSQLLGMQK 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                 +      + + L+++ + +    V+DI +   +   +LKM+KQE+K+E K + G
Sbjct: 177 LTLSQGITMVMTILFEGLLLMGVALLIFGVIDIPYQRWEHLKQLKMTKQELKEEYKNNEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
            P +K R + I +   R K+ +A  +A ++ITNPTHYA+AL+Y  + +DAP +VAKG + 
Sbjct: 237 CPEVKQRIRQIQQQFARRKIDKAVPKADVVITNPTHYAVALKYDTSLSDAPFVVAKGIDE 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 297 TAMHIQRIARENQVEILHSPPLTRSIYYTTAIEQAIPSQLYIAVAHIL 344


>gi|313634400|gb|EFS00988.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL N1-067]
          Length = 303

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 146/255 (57%)

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
            ++++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  LV  +K+
Sbjct: 38  GKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGLVEVVKA 97

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            + I L+  +  I   ++  T++ +   N    L   F   + V + + L IA + +LD 
Sbjct: 98  LLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSLKQIFSLFKNVXLALFLVIAVIGLLDF 157

Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ N
Sbjct: 158 FYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNN 217

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH ++ +RY + ++ AP L+AKG++ +A  +R++A    +P+     LARS++     +
Sbjct: 218 PTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPD 277

Query: 332 SAIPPVFYKAVAQLI 346
             I    YK V +++
Sbjct: 278 EYIQEDLYKDVIEVM 292


>gi|162417792|ref|YP_001604479.1| type III secretion appartus protein YscU [Yersinia pestis Angola]
 gi|162354812|gb|ABX88759.1| type III secretion appartus protein YscU [Yersinia pestis Angola]
          Length = 354

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 181/338 (53%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI DA  +G    S+E  + ++++  L  +L + S   +   S L  +L  
Sbjct: 4   EKTEQPTPKKIRDARKKGQVAKSKEV-VSTALIVALSAMLMWLSDYYFEHFSKL--MLIP 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP  K
Sbjct: 61  AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I    
Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK++++ 
Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKIA 
Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +PI +   LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338


>gi|254291356|ref|ZP_04962149.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226]
 gi|150422686|gb|EDN14640.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226]
          Length = 376

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 185/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  +S++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDGQE-RTEEATSRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|124268261|ref|YP_001022265.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
 gi|124261036|gb|ABM96030.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
          Length = 387

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 183/354 (51%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++  A D    A S +K++ A  +G  P SR+   F+++ A  I LL   +P   + T 
Sbjct: 1   MADQGAQDRNLPA-SERKLKKAREDGQVPRSRDLGHFAAVAAG-IALLAAMAP---TATG 55

Query: 61  DLHVLLASATQ---RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            +  LL S  +     L   + +   L  L +  +  ++P   + ++  + S L      
Sbjct: 56  WMTRLLQSGLRFDAGTLNGTASMSERLAELGVQFAWAMLPIGAVMVLAALASSLTVGGWN 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
             L  ++P F +++   G+ R+ S + LV+ ++S V  +++G +    L++N F     +
Sbjct: 116 FTLKAIEPKFSKLNPLTGLPRMLSADRLVDTVRSCVLALVIGLVGAFYLSQNVFQFTSTL 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +    + L  A   V   L+ +LL +A   ++D+     Q   +LKMS QE+K E K++ 
Sbjct: 176 TLPLPTALAQAGNDVLYGLMFLLLALAVFALIDVPLQRFQHAKRLKMSHQEMKQEHKENE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GN  +K + K+  R     +M+ A  +A +++ NPTHYA+AL+Y +    AP +VAKG +
Sbjct: 236 GNVEVKAKVKARMREMANRRMLAAVPKADLVVMNPTHYAVALKYEEGRGGAPRVVAKGAD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           L+A ++R +A +  +P+ + P LAR+L+    ++  IP   Y AVAQ++  +Y 
Sbjct: 296 LMAMRIRDLAKDSKVPVLQAPVLARALYAHAELDREIPIALYTAVAQVLAYVYQ 349


>gi|27365293|ref|NP_760821.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus CMCP6]
 gi|320155677|ref|YP_004188056.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O]
 gi|27361440|gb|AAO10348.1| flagellar biosynthetic protein FlhB [Vibrio vulnificus CMCP6]
 gi|319930989|gb|ADV85853.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O]
          Length = 376

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 188/356 (52%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++  
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIPVLN 119
            +  L  S ++ ++ D S +  + +    +    ++  L   F+   IGS  +  I   +
Sbjct: 60  AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGIS-FS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +    P   +++   GIKR++ + + V  +KS +K+ LV T + I L +     L  +S 
Sbjct: 118 VEAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALV-TGVAIYLIQASQEDLIQLSL 176

Query: 180 N--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +  P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + 
Sbjct: 177 DVYPQNI-FHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P +K R + + R   + +MM     A +I+TNP H+++ALRY Q  + APV+VAKG +
Sbjct: 236 GKPEVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPVVVAKGTD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 296 HMAMKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351


>gi|331006676|ref|ZP_08329954.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
 gi|330419508|gb|EGG93896.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
          Length = 377

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 182/357 (50%), Gaps = 13/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+D+   KTE  + KK E A  +G  P S+E    S +LA  I L + F   + +   
Sbjct: 1   MSESDSSQEKTEEATPKKAEKAKEDGQVPRSKELITTSVLLAGTIGL-YLFGGILANSMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQR 114
           D+  L  + ++  + D +++   L      A   +IP   + ++       G+G +L   
Sbjct: 60  DIAKLNFAISREAIFDPAYMFSNLGQSFYDAFLALIPIFAVLLIAAIVGPIGLGGWL--- 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
               +   + P   R++   G+KR++S+  L+   K+  K++L+  +  + L      ++
Sbjct: 117 ---FSAKSMMPKMSRMNPGAGLKRMFSVTALIELAKALAKVVLIILLSLLLLKSLEGELM 173

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                + ++ + H+        I + L    + ++D+     +   KLKM+ QE+KDE+K
Sbjct: 174 SLAYQDINASIMHSLEISMWSAIALSLVTIFIAIVDVPIQIWESAKKLKMTMQEVKDEMK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G P +K R + + +     +MM     A ++ITNPTHY++A++Y     + P++VAK
Sbjct: 234 DTDGKPEVKGRIRQLQQEIANRQMMGEVPEADVVITNPTHYSIAVKYKPEMMETPIVVAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G +L+A ++R++A EH++ I E P LAR+++    I+  IP   Y AVA+++  ++ 
Sbjct: 294 GVDLVAFRIREVAKEHSVDIVESPILARAIYNTTKIDEPIPKGLYIAVAKVLAYVFQ 350


>gi|253702491|ref|YP_003023680.1| flagellar biosynthesis protein FlhB [Geobacter sp. M21]
 gi|251777341|gb|ACT19922.1| flagellar biosynthetic protein FlhB [Geobacter sp. M21]
          Length = 353

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 188/355 (52%), Gaps = 6/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY--SV 58
           M++ D   +KTE P+SKKIE+A N+   P SRE +   S++  ++ L  + S G++  ++
Sbjct: 1   MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTL--YASSGLFLKTM 57

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +  +     + +L   +    ++      A  L  P +L+ ++ GI   + Q    +
Sbjct: 58  KTSMQEIFGGLARPELTFAAVHTLMIKEFGYLAIMLA-PFILVGIVAGIAVEVTQGGLTV 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   +K    R++  +G+ R+++ +++    KSF+K+ +VG +    LTE    ++  + 
Sbjct: 117 SSEKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIIYLVD 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +   I+        K+++     +  L VLD+ +   ++   LKM+KQE+KDE K   G
Sbjct: 177 QDLMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFIENLKMTKQEVKDEHKNMEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K +QK       R +M +    A +++TNPTHYA+AL+Y + +  APV++ KG + 
Sbjct: 237 DPAVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAIALKYDRLQMAAPVVLFKGVDQ 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A +++  A EHN+ + E   LAR L+ QV     IP   + AVA+++  +Y  K
Sbjct: 297 MALQIKITAREHNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351


>gi|240145485|ref|ZP_04744086.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82]
 gi|257202300|gb|EEV00585.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82]
          Length = 379

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 190/373 (50%), Gaps = 46/373 (12%)

Query: 5   DAPDN-KTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPG-------- 54
           D P   KTE  + KK+ +A  +G    S+E  + F  I+  L+  +F    G        
Sbjct: 19  DGPGGEKTEPATEKKLREAREDGKVAKSKELTAAFDLIVLFLVLKVFISLIGNGFLEVFY 78

Query: 55  -IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLI 112
            +Y +  D   + A  +  K      I   L ++ +   ++  P    F +FG+  + L+
Sbjct: 79  YVYKLMPDFVSVNAMESSTK-----EITSFLHNVYIEMFKMAAP----FFVFGVAVTALV 129

Query: 113 QRIPV---LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT-- 167
             + V   +    +KP   + +   G KRI+S ++L   +KS +KI   G II ++ T  
Sbjct: 130 SILQVGWKVTAKPLKPKGDKFNPINGFKRIFSKDSLFELLKSILKI---GLIIYVAYTSI 186

Query: 168 ----ENYFTMLDFISANPHSILY-----HAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
                + F + D I  N   +L      +A F +  V +++        + D  +  H++
Sbjct: 187 KGEANDIFILYD-IPLNQAVVLCGNVIINAGFKISLVYLVV-------GIADFVYQKHRF 238

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
              +KM+KQE+KDE K + GNP IK RQ+   R   + +MM+   +A ++ITNPTH A+A
Sbjct: 239 NEDMKMTKQELKDEYKNTEGNPEIKGRQRQRMREASQRRMMQDVPKADVVITNPTHLAVA 298

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           ++Y    + AP+++AKG++ +A+K+R+ A E++I I E   LAR L+  V I + IPP  
Sbjct: 299 IKYDAEVSRAPIVIAKGEDYLAQKIREKAKENHIEIVENKPLARMLYANVDIGAEIPPEL 358

Query: 339 YKAVAQLIYKIYH 351
           Y+AVA+++  +Y+
Sbjct: 359 YQAVAEILAMVYN 371


>gi|297584054|ref|YP_003699834.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens
           MLS10]
 gi|297142511|gb|ADH99268.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens
           MLS10]
          Length = 359

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 185/353 (52%), Gaps = 13/353 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK  ++ N+G    S + +   +    +   L FF  G + V   L ++  +
Sbjct: 13  EKTEKATPKKKRESRNKGQVAKSTDVN---TAFILMFVFLMFFFAGPFMVDQMLTIVRFT 69

Query: 69  ATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             +  L D++  ++  +       A+  V P +L  ++ G+ +  +Q   +     VK  
Sbjct: 70  MEEYLLMDVTPANVQPMFIDYIFQAAVAVAPVMLASVIAGVFANYVQVGVLFAPEAVKFK 129

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            ++++  +G KRI+SI  LV F+KS +KI+LVG +  I +   +  M D +    +++  
Sbjct: 130 LEKINPLKGFKRIFSIRALVEFLKSMMKIVLVGGVTGIVI---WLYMDDLLKIGLYAVED 186

Query: 187 HAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            A      ++ M L     +  L +LD  +  + +   ++MSKQ++KDE K++ G+P+IK
Sbjct: 187 AAVLIGTLIIFMGLAVGFLLIFLAILDYMYQKYDFEKNIRMSKQDVKDEYKKTEGDPLIK 246

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++ K   R     +MM+   +A ++ITNPTHYA+AL+Y     +APV+VAKG + +A K+
Sbjct: 247 SKIKEKQRQMAMSRMMQEVPKADVVITNPTHYAIALKYDADNMEAPVIVAKGVDYVALKL 306

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY--HKKI 354
             IA  + +   E   LAR+L+ Q  I   +P   +KAVA+++  +Y   KKI
Sbjct: 307 INIAKNNEVLTAENRPLARALYAQADIGDQVPEDLFKAVAEVLAYVYRIQKKI 359


>gi|56475796|ref|YP_157385.1| flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1]
 gi|56311839|emb|CAI06484.1| Flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1]
          Length = 388

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 178/339 (52%), Gaps = 37/339 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSP----GIYS 57
            D+   KTE  S +++E A  EG  P SRE S F  ++  A  ++L+  +      G+  
Sbjct: 3   EDSDLEKTEQASPRRLEQAREEGQVPQSRELSTFLVLITGASGLWLMGGWIGERMLGMLR 62

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
                   LA   Q  L+D      L T   L+    ++P   + M+  +G+ ++    V
Sbjct: 63  HGFRFERALAFDPQLMLQDFGD---LFTQALLT----MLPLFGVLMVAAVGAPILLGGFV 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTML 174
            +   +     R+   +GI R++ ++ LV  +KS +K  +VG I   ++    ++ F + 
Sbjct: 116 FSPKALGLELDRMDPLKGIGRMFLLHGLVEMLKSLLKAAVVGGIGVFAMWRERDHIFALT 175

Query: 175 ---------DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
                    DF+ A    +L+ A        ++I++ +A L ++D+ +   Q++ +L+M+
Sbjct: 176 SEAVERAVPDFLQA----VLFSA--------LLIIMGLALLALIDVPFQLWQYHKRLRMT 223

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K+E+K E K+  G+P +K R +S+ R   R +MM    +A +++TNPTH+++AL+Y   +
Sbjct: 224 KEEVKREGKEQEGDPHVKGRIRSMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAQK 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
             APV+VAKG+  IA K+R++A EH +P+ E P LAR++
Sbjct: 284 MGAPVVVAKGRGEIALKIRELAKEHKVPLLEAPPLARAV 322


>gi|183221908|ref|YP_001839904.1| flagellar biosynthetic protein FlhB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167780330|gb|ABZ98628.1| Flagellar biosynthetic protein FlhB; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 403

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 177/358 (49%), Gaps = 17/358 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + +TE PS ++  +   +GN P S E +    +L     L       I +    +   
Sbjct: 51  ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 110

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-------RIPVL 118
           L      +         +L+ +S     L+ P L + ++F I   ++Q       R    
Sbjct: 111 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 170

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
             + + P+FKRV        + +   L N +KS  K++L+G I  I ++ ++  +L   +
Sbjct: 171 RFDRISPNFKRV--------LPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGN 222

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                 +    ++  K+++   L +  + V D  +   ++   LK +  E K E+K+  G
Sbjct: 223 MGMMQAITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSG 282

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++KNR+  +AR  ++  M+    +A ++ITNPTHY++AL Y    + AP ++AKG+N 
Sbjct: 283 DPVMKNRRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENR 342

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354
           +A ++R+IA E+++PI E P  AR L+ QV +   IP  F++AV Q++  +  + KK+
Sbjct: 343 LALEIRRIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 400


>gi|323956511|gb|EGB52253.1| flagellar biosynthetic protein FlhB [Escherichia coli H263]
          Length = 263

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 138/231 (59%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P 
Sbjct: 1   MQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPI 60

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +
Sbjct: 61  TAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 120

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A +
Sbjct: 121 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALR 180

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 181 IREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 231


>gi|20807870|ref|NP_623041.1| flagellar biosynthesis/type III secretory pathway protein
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516434|gb|AAM24645.1| Flagellar biosynthesis/type III secretory pathway protein
           [Thermoanaerobacter tengcongensis MB4]
          Length = 362

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 178/344 (51%), Gaps = 2/344 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67
            KTE  + K+ ++A  +G    SRE +    ++   + +  F    +  V + L  LL  
Sbjct: 14  EKTEPATPKRRQEARKKGQVFQSREITSALVVVTGFLMINLFLQSFLGRVGNLLKFLLIT 73

Query: 68  -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            S     + + + I  +  ++      + +P +L      + S   Q   V     +   
Sbjct: 74  YSGANDDVFNTAGIWKIFYYVVNQIVLISVPVILAIFAVSLISTYFQVGFVFTAEPLTLK 133

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F+R++  EG KRI+S   LV  +KS  K++++  I+   L   Y  +   +  +   +L 
Sbjct: 134 FERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLLR 193

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +    +  + I I + +  L V+D  + + ++ + LKMSK++IK+E K++ GNP IK   
Sbjct: 194 YTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAEI 253

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A ++ITNPTH+A+AL Y    NDAPV+VAKG++L+A K+++ 
Sbjct: 254 RKKQRQISTRRMMQDLKKADVVITNPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKEE 313

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A + +IPI E   LA++L+    +   IPP  Y+AVA+++  +Y
Sbjct: 314 AEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVY 357


>gi|258621117|ref|ZP_05716151.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573]
 gi|262170893|ref|ZP_06038571.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
 gi|258586505|gb|EEW11220.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573]
 gi|261891969|gb|EEY37955.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
          Length = 376

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 191/361 (52%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   + L++F    + G+++
Sbjct: 1   MAESDGQE-RTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFT 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
               L  L     + ++ DI  +  ++   L      L++  + LF+   IG+  +  I 
Sbjct: 60  AMQRLFSL----DREEIFDIGKLFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGIN 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFT 172
             +     P   +++   G KR++ + + V  +KS +K++LV  +    I  S  + +  
Sbjct: 116 -FSAEAAMPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQL 174

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            LD    N    ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE
Sbjct: 175 SLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++
Sbjct: 231 YKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVI 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  
Sbjct: 291 AKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|189911977|ref|YP_001963532.1| endoflagellar biosynthesis protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776653|gb|ABZ94954.1| Endoflagellar biosynthesis protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
          Length = 444

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 177/358 (49%), Gaps = 17/358 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + +TE PS ++  +   +GN P S E +    +L     L       I +    +   
Sbjct: 92  ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 151

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-------RIPVL 118
           L      +         +L+ +S     L+ P L + ++F I   ++Q       R    
Sbjct: 152 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 211

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
             + + P+FKRV        + +   L N +KS  K++L+G I  I ++ ++  +L   +
Sbjct: 212 RFDRISPNFKRV--------LPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGN 263

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                 +    ++  K+++   L +  + V D  +   ++   LK +  E K E+K+  G
Sbjct: 264 MGMMQAITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSG 323

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++KNR+  +AR  ++  M+    +A ++ITNPTHY++AL Y    + AP ++AKG+N 
Sbjct: 324 DPVMKNRRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENR 383

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354
           +A ++R+IA E+++PI E P  AR L+ QV +   IP  F++AV Q++  +  + KK+
Sbjct: 384 LALEIRRIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 441


>gi|170722841|ref|YP_001750529.1| flagellar biosynthesis protein FlhB [Pseudomonas putida W619]
 gi|169760844|gb|ACA74160.1| flagellar biosynthetic protein FlhB [Pseudomonas putida W619]
          Length = 380

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 187/360 (51%), Gaps = 18/360 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  + +       L  F   +     
Sbjct: 1   MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVA-VTLAGAGGLLAFGGHLAETLL 59

Query: 61  DLHVLLASATQRKLEDISHI-VFLLT--HLSLSASRLVIPGLLLFMM-----FGIGSYLI 112
           ++  L  S T+  + D   +  FLL    +++ A + V+  +LLF++       +G +L 
Sbjct: 60  EMMRLNFSLTREVIVDEGAMGAFLLASGKMAIWAVQPVL--ILLFVVAFIAPIALGGFL- 116

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
                 + + ++P F R++   GIKR++S+N L   +K+  K I++  +  + L  +   
Sbjct: 117 -----FSGSLLQPKFSRMNPLAGIKRMFSMNALTELLKAVAKFIVILVVALVVLANDRQA 171

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +L   +      + H+   V    + +   +  +   D+ +   Q + KLKM+KQE+KDE
Sbjct: 172 LLAIANEPLDQAIIHSVQVVGWSALWMSAGLLLIAAADVPFQLWQTHKKLKMTKQEVKDE 231

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVL 291
            K S G P +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L
Sbjct: 232 YKDSEGKPEVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLL 291

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG + IA K+R+I  EH + I E P+LAR+++    I   IP   Y AVAQ++  ++ 
Sbjct: 292 LAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQ 351


>gi|323490157|ref|ZP_08095377.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2]
 gi|323396205|gb|EGA89031.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2]
          Length = 362

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 186/353 (52%), Gaps = 17/353 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + +K +++  +G    S E +    I+  ++ L    S G + +   L +    
Sbjct: 15  EKTEKATPQKRQESKRKGQVAKSPEVAAAMIIIGGIVLL---NSMGGWMMDRILAIYRIH 71

Query: 69  ATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            TQ    +I+   I  L   ++++A  L++P +L+ M+FG     IQ   +   + +   
Sbjct: 72  FTQYISWEITPATIRTLFEQMAMNAFLLMLPIMLVGMIFGFLGNFIQVGAIFTADPIMAK 131

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTMLDFISANPHS 183
           F+R+   +G KRI+++  LV   KS +KI ++G      L    +  FT+      +  S
Sbjct: 132 FERLDPIKGAKRIFALRALVELGKSLLKIAIIGGAAFGVLWVGKDELFTL------SQKS 185

Query: 184 ILYHAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           I Y   F    V  M L   L + +L+VLD  +  +++   +KMSKQ+IKDE K++ G+P
Sbjct: 186 IGYSFSFIGSLVFQMGLIAGLILLSLSVLDYIYQKYEFEKGIKMSKQDIKDEYKKAEGDP 245

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK++ K   R    ++M++    A ++ITNPTHYA+A++Y     +APV++A G++ +A
Sbjct: 246 LIKSKIKDKQRQMSMNRMIQDLPSADVLITNPTHYAIAIKYDAETMEAPVIIAMGKDYLA 305

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++ A E  I   E   LAR+L+ QV +   +P   + AVA+++  IY  K
Sbjct: 306 LKIKEKAKEFGIVTMENKPLARALYAQVEVGDVVPEELFLAVAEVLAYIYRLK 358


>gi|152990384|ref|YP_001356106.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2]
 gi|151422245|dbj|BAF69749.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2]
          Length = 351

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 192/351 (54%), Gaps = 15/351 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-FSPGIYSVTSDLHVLLA 67
           +KTE  + ++ E A  EG    S++  + ++++  ++++LF  + P  Y    +L + + 
Sbjct: 6   SKTEKATPRRREKAREEGQVAKSQDIPISATLI--VVFMLFLAYIPFAYKKLYELFMFIF 63

Query: 68  SATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +     +   ++ I++L+         L IP  L  ++ G+ S + Q   +L    + P 
Sbjct: 64  ADPLYNIPQYNYSIIYLVMEF---MGYLTIPFFLALLITGVVSNIAQIGFLLTFKSMVPK 120

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +++    G+KR++S+  L   +K+ +K+I   TI++  L +  F + D       +   
Sbjct: 121 LEKIDPIAGLKRLFSLKTLFELVKNILKLI-AATIVSYFLVQ--FLLRDVFQYATTTPYK 177

Query: 187 HAFFTVRKVLIMILLFIATLTV----LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            A   V+  LIMIL F A L++    +D  +   ++   +KMSK E+K+E KQ  GNP +
Sbjct: 178 DAVLLVKYTLIMILGF-AILSIPIAAIDFFFRKFEFEENIKMSKHEVKEEHKQMEGNPQV 236

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+  +   R    +++M    +A ++ITNP H+A+AL+Y + +  AP +VAKG++ +A K
Sbjct: 237 KSEIRKRMREMSMNRIMAEVPKADVVITNPVHFAVALKYEKEKMHAPKVVAKGKDYLALK 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA EH +PI E P LAR++++   ++  IP   YKA+A++  K++ ++
Sbjct: 297 IKEIAKEHGVPIEENPPLARAIYQACDVDEYIPENLYKAIAKIFAKVFKRQ 347


>gi|295097231|emb|CBK86321.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 381

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 176/369 (47%), Gaps = 40/369 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    D KTE P+  + + A  EG  P SRE +  + +L                V  
Sbjct: 1   MSEESESD-KTEDPTPHRKQKAREEGQVPRSRELTTLAMLL----------------VGW 43

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLS--------ASRLVIPGLLLFMMFGIGSYLI 112
            L V   S    +LE I H       L +         A+ L+    L  + F  G Y+ 
Sbjct: 44  GLIVGAGSHLATQLESILHNGLTFDRLLIRDPQNMLHRAASLLSMAFLAILPFAGGLYVT 103

Query: 113 -----QRIPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
                  I  LN +   +K + K+++   GIKR++S   +   +KS +K++L  T   + 
Sbjct: 104 AITAPSIIGGLNASSKALKVNLKKLNPVTGIKRLFSAQMVSEMIKSILKVLLAATGGGLF 163

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSK 221
           L  N    ++ +    +  L  A   +  +LI  +L++      +   D+ +     + K
Sbjct: 164 LLLNKSRFINLM----YEPLGGALNDISNLLIGCMLYVILSLIPMVAFDVIYQLWSNFKK 219

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           L+MS+QEIKDE K   G+P IK R + I R   + +MM     A +++ NPTHY++AL+Y
Sbjct: 220 LRMSRQEIKDEFKNQEGDPHIKGRVRQIQRQMAQSRMMAEVPTADVVVNNPTHYSVALKY 279

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
            +    AP++VA G  LIA ++R++A E+ +P+ E P LAR+L++       +P   Y A
Sbjct: 280 QEGTMGAPIVVASGSGLIALRIREMAEENRVPMLEAPPLARALYRHCEPGQPVPGELYNA 339

Query: 342 VAQLIYKIY 350
           VA+++  +Y
Sbjct: 340 VAEVLAWVY 348


>gi|182412230|ref|YP_001817296.1| type III secretion exporter [Opitutus terrae PB90-1]
 gi|177839444|gb|ACB73696.1| type III secretion exporter [Opitutus terrae PB90-1]
          Length = 367

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 179/354 (50%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  D KTE PS KK+ +A++ G    S E ++   ++A L  L F        V +
Sbjct: 1   MAEHD-QDQKTEQPSEKKLSEAMDRGQFARSPELAVLFLLVAVLAALSFSVREASREVAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               L +     K+E  + I        L++   + P LL  ++  + +  +Q    L  
Sbjct: 60  YAASLFSRFGSMKVEHDT-IRAYFGEAMLTSGTALAPLLLACVVAALLAGGVQSGFRLTP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
                  +R++  EG KR+++ + LV      +K++ +G  + +        M+D + + 
Sbjct: 119 EAFGFKPERLNPVEGFKRVFNKSALVRAGVDLLKLVALGAALYLGARG---LMMDPLFSA 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLD-IGWSYHQW--YSKLKMSKQEIKDEIKQSY 237
           P    Y   F      + +   I  L V+  I +SY ++  +  L M++QE+KDE K   
Sbjct: 176 PVEAAYLGQFLTDATYVFLSRLILALGVITAISYSYEKFKTHRDLMMTRQELKDEHKNQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+   K   + +AR   + +MM A   A +++TNPTH+A+AL+Y + ++ APV++AKG+N
Sbjct: 236 GSSQAKMAMRRMARRLTQRQMMSAVPTADVVVTNPTHFAVALKYERGKDAAPVVLAKGEN 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A++++ IA EH +P+ E   +AR LF    +  AIPP  Y+AVA ++  +Y 
Sbjct: 296 RFAQRIKAIAAEHGVPMVENKPVARLLFSMGKVGEAIPPELYQAVASILAVVYR 349


>gi|289810262|ref|ZP_06540891.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 247

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 125/215 (58%)

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++S       +K+ +K  LVG +    L  ++  M+  ++ +P   + +A   V    ++
Sbjct: 1   MFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALL 60

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           ++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P +K + + + R+  + +M
Sbjct: 61  VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRM 120

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           ME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA ++R+I  EH +P  E P
Sbjct: 121 MEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAP 180

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215


>gi|317014180|gb|ADU81616.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           Gambia94/24]
          Length = 358

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSTKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L+     L++P L++ M+    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTVL-------DIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+      L  I++L  L       D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|37680652|ref|NP_935261.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus YJ016]
 gi|37199401|dbj|BAC95232.1| flagellar biosynthesis pathway, component FlhB [Vibrio vulnificus
           YJ016]
          Length = 376

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 188/356 (52%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++  
Sbjct: 1   MAESDG-QERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIPVLN 119
            +  L  S ++ ++ D S +  + +    +    ++  L   F+   IGS  +  I   +
Sbjct: 60  AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGIS-FS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +    P   +++   GIKR++ + + V  +KS +K+ LV T + I L +     L  +S 
Sbjct: 118 VEAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALV-TGVAIYLIQASQEDLIQLSL 176

Query: 180 N--PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +  P +I +HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + 
Sbjct: 177 DVYPQNI-FHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P +K R + + R   + +MM     A +I+TNP H+++ALRY Q  + AP++VAKG +
Sbjct: 236 GKPEVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 296 HMAMKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351


>gi|153213288|ref|ZP_01948700.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587]
 gi|229528868|ref|ZP_04418258.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)]
 gi|124116088|gb|EAY34908.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587]
 gi|229332642|gb|EEN98128.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)]
          Length = 376

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 185/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  ++++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDGQE-RTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|332701286|ref|ZP_08421374.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551435|gb|EGJ48479.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 357

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 193/350 (55%), Gaps = 15/350 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE+ ++K+ + + +EGN P S+E S  + IL  L+ L          +  ++  L AS
Sbjct: 7   SKTESATAKRRKKSRDEGNVPRSQELSKLAVILVGLLVLRLLIG----FIGDEMKSLFAS 62

Query: 69  --ATQRKLEDISHIVFLL-THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL---NH 122
             +    LE  +  +++L   L++  +++++P  +LF +  + +++I RI V  L     
Sbjct: 63  FLSNWGNLELTTEGLYILFVDLAVHLAKMLLP--VLFSL-ALAAFVINRIQVGQLWTTKV 119

Query: 123 VKPSFKR-VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            KP  ++ V++  GIKR I++++  V   +S +    V     I L      +L   S  
Sbjct: 120 FKPKMEKFVNIVGGIKRLIFNVDAFVRLARSILGAAAVAIGPIILLRHEMNNLLPLFSQT 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I  +      K+++  L+ + T+ V+D  ++   +  KLKM+K E+KDE KQ+ G+P
Sbjct: 180 TEGIAVYMLTVSYKMVLYSLIPMITVAVIDTVYTRWDYEEKLKMTKDEVKDERKQAEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ RQK    +    +M+    +A +++TNPTH+A+AL Y  ++  AP++VAKG + +A
Sbjct: 240 KIRQRQKQKMMAMSMSRMLHNVPKADVVVTNPTHFAVALSYDLSKAPAPLVVAKGADHMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           K++R++A E  +PI E   LAR+L+ QV +   IP   YKAVA ++ +++
Sbjct: 300 KRIREMAREAGVPIRENKPLARALYDQVEVGDIIPEDLYKAVATILARLH 349


>gi|254446395|ref|ZP_05059871.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235]
 gi|198260703|gb|EDY85011.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235]
          Length = 369

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 191/353 (54%), Gaps = 8/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  D+KTE P++K++ D   +GN P ++E  +  ++LA L+ ++F       +  S
Sbjct: 1   MADTD-QDSKTEKPTAKRLTDEQEKGNFPQAQEVGVTFTLLAGLLVVMFSGQTIASNAFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L + +   L   ++I +    + +   RL  P +L  M+ GI +  +Q       
Sbjct: 60  FSSSILGNLSSIDLS-TNNISYFFNEVIVVLGRLAAPFMLAGMVSGIIAGGLQTRFRFTP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F +++   G K++ S +  V F    +K+  +G I+ +++ +    + D I   
Sbjct: 119 KALGIKFNKLNPINGAKQLVSKDVFVRFGIDLLKMGAMGLILWVAMRK---IIKDPIFYA 175

Query: 181 PHSILYHAFF---TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           P  I++   F   T+  V I + + +  + ++   W   +   K+KM+K+E+K E K   
Sbjct: 176 PIDIVHVGMFITDTLVYVFIRLTIAVGLIAIISYLWQSKKTMDKMKMTKEEVKQERKDQD 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
            +P I+  +  +A   ++ +M++  + A +++TNPTHYA+AL+Y +  + AP+++AKG+N
Sbjct: 236 MSPEIRKARMQMAMRLMQGQMLDEVATADVVVTNPTHYAVALKYERGVDSAPMVLAKGEN 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             A++++++A EH +P+ E   +AR L+K   + +AIP   +++VA+++  +Y
Sbjct: 296 AFAQRIKEVAAEHGVPVVENKMVARMLYKVAQVGAAIPMEMFQSVAEILAFVY 348


>gi|15642119|ref|NP_231751.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|147674451|ref|YP_001217641.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O395]
 gi|153818990|ref|ZP_01971657.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457]
 gi|153822901|ref|ZP_01975568.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33]
 gi|227082245|ref|YP_002810796.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2]
 gi|229507795|ref|ZP_04397300.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286]
 gi|229511968|ref|ZP_04401447.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33]
 gi|229519104|ref|ZP_04408547.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9]
 gi|229607340|ref|YP_002877988.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236]
 gi|254849205|ref|ZP_05238555.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10]
 gi|298497858|ref|ZP_07007665.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757]
 gi|9656670|gb|AAF95265.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126510485|gb|EAZ73079.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457]
 gi|126519597|gb|EAZ76820.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33]
 gi|146316334|gb|ABQ20873.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395]
 gi|227010133|gb|ACP06345.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2]
 gi|227014016|gb|ACP10226.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395]
 gi|229343793|gb|EEO08768.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9]
 gi|229351933|gb|EEO16874.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33]
 gi|229355300|gb|EEO20221.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286]
 gi|229369995|gb|ACQ60418.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236]
 gi|254844910|gb|EET23324.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10]
 gi|297542191|gb|EFH78241.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757]
          Length = 376

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 184/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDGQE-RTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|229513771|ref|ZP_04403233.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21]
 gi|229348952|gb|EEO13909.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21]
          Length = 376

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 185/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  ++++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDGQE-RTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|239628943|ref|ZP_04671974.1| flagellar export protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519089|gb|EEQ58955.1| flagellar export protein [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 184/359 (51%), Gaps = 21/359 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD---LHV 64
           D KTE  + K+ +D   +GN   S + +   S+L  L + L   +P +Y    D   + +
Sbjct: 4   DEKTEKATPKRRQDERKKGNVFQSNDVAAVCSML-VLFHSLKALAPHMYRNFRDAMYMFM 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            +A+ +    ++    + +   L    S L  P L + ++  +     Q     +++ +K
Sbjct: 63  GMAADSDSFHQEAGREMLVKAMLLFLESAL--PLLFIGVLTAVAVTFFQTRMAFSMDVLK 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
              +R+S  +G KR++SI ++V  +K+ +KI ++G ++ + L      +   +       
Sbjct: 121 FKMERISPLKGFKRMFSIRSVVELIKALIKITILGWVVYVFLKGRMEELSRLMEGTVEGA 180

Query: 185 LYHAFFTVRKVLIMI------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           L    FT   V+ ++       +F+A++  L   W Y +    L+MSKQEIK+E KQ+ G
Sbjct: 181 L---IFTGNTVISLVDTVGVAFIFLASMDYLYQWWEYEK---NLRMSKQEIKEEYKQTEG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK + +   R     +MM+   +A +I+ NPTHYA+AL Y    N APV++AKG + 
Sbjct: 235 DPQIKGKIREKQRQMASMRMMQNVPKADVIVRNPTHYAVALGYDADRNRAPVVLAKGADH 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKKI 354
           +A K+ ++   + + I E+  LAR L+  V ++  IP  +Y+ VA++   +YK+  KK+
Sbjct: 295 LALKIVEVGEANGVYILEDRPLARGLYASVEVDMEIPEEYYQTVAKILAFVYKLNDKKL 353


>gi|254478867|ref|ZP_05092231.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035180|gb|EEB75890.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum
           DSM 12653]
          Length = 360

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 177/344 (51%), Gaps = 2/344 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67
            KTE  + K+ ++A  +G    SRE +    I+   + +  F    +  V + L  LL  
Sbjct: 12  EKTEPATPKRRQEARKKGQVFQSREITSALVIVTGFLMIHLFLQSFLGRVGNLLKFLLIT 71

Query: 68  -SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            S     + + + I  +  ++      + +P +L      + S   Q   V     +   
Sbjct: 72  YSGANDDVFNTAGIWKIFYYMVNQVVLISVPIMLAIFAVSLISTYFQVGFVFTAEPLTLK 131

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F+R++  EG KRI+S   LV  +KS  K++++  I+   L   Y  +   +  +   +L 
Sbjct: 132 FERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLLR 191

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +    +  + I I + +  L V+D  + + ++ + LKMSK++IK+E K++ GNP IK   
Sbjct: 192 YTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAEI 251

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A ++I NPTH+A+AL Y    NDAPV+VAKG++L+A K+++ 
Sbjct: 252 RKKQRQISTRRMMQDLKKADVVIINPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKEE 311

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A + +IPI E   LA++L+    +   IPP  Y+AVA+++  +Y
Sbjct: 312 AEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVY 355


>gi|254779257|ref|YP_003057362.1| flagellar biosynthesis protein FlhB [Helicobacter pylori B38]
 gi|254001168|emb|CAX29127.1| Flagellar biosynthesis and export/adhesin [Helicobacter pylori B38]
          Length = 358

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 185/353 (52%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSTKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L+     L++P L++ M+    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLTKDTFLLLLPILIILMVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+      L  I++L         +D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|239826631|ref|YP_002949255.1| flagellar biosynthesis protein FlhB [Geobacillus sp. WCH70]
 gi|239806924|gb|ACS23989.1| flagellar biosynthetic protein FlhB [Geobacillus sp. WCH70]
          Length = 360

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 192/355 (54%), Gaps = 21/355 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + +K ++   +G   +++ A + ++I+  +++L+ +F  G +     LH +  S
Sbjct: 14  EKTEKATPRKRQEVREKGQ--VAKSADINTAIVMLVVFLVLYFL-GTFYKEKLLHFMYQS 70

Query: 69  ATQRKLEDISHIVFLLTHLSLS----ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             Q    D++  +  +  LS++     + LV P     ++    +  +Q   +     +K
Sbjct: 71  FEQYARVDLT--IDSVHRLSITWLKNMAMLVAPIFFAAVIAACLANFLQVGFLFTTEPLK 128

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
             + R+   +G KR+ S+  +V  +KS +KI +VG ++T +L   +F +   +S    SI
Sbjct: 129 MKWNRLDPVQGFKRMISLRAIVELLKSILKISVVG-LVTFALL--WFQIDHILSLTTKSI 185

Query: 185 LYH----AFFTVRKVLIM--ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                  A  T +  L     LLF+A   + D  +    +   ++MSKQ+IKDE K++ G
Sbjct: 186 STTLSSLASLTAKMGLYASSALLFLA---IFDYLYQRFDFEKNIRMSKQDIKDEYKKTEG 242

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK++ K   R     +MM+   +A ++ITNPTHYA+AL+Y   + DAP++VAKG + 
Sbjct: 243 DPLIKSKIKQKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPMVVAKGVDY 302

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K++++A EH++   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 303 VALKIKQLAKEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357


>gi|188574349|ref|YP_001911278.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|50428352|dbj|BAD29989.1| HrcU [Xanthomonas oryzae pv. oryzae]
 gi|188518801|gb|ACD56746.1| HrcU [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 359

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y V   +  L  
Sbjct: 3   EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFVDH-MRALTR 58

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +         D + I   L H+ +    L++P L   ++ G+     Q     +L  V P
Sbjct: 59  IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  I 
Sbjct: 119 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDIS 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E K+S G+P IK
Sbjct: 179 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     +  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  AIP   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 335


>gi|254517020|ref|ZP_05129078.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3]
 gi|219674525|gb|EED30893.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3]
          Length = 384

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 187/360 (51%), Gaps = 20/360 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      +TE P+ ++ E+A  +G  P SRE    +++L+ LI  +  +  G   V +
Sbjct: 1   MAEEQTGQERTEQPTERRKEEARRKGQVPRSRE---LNTMLSLLITGVGLWVLGGGLVDN 57

Query: 61  DLHVLLA--SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            L +  A  S  +  + D   +     H+ +SA   + P   + ++  +   LI      
Sbjct: 58  LLAITSAGFSVDRAAVFDTQQLPVHFMHMVISALLALAPLFAVTVVAALAGPLIMGGWSF 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITISLTENYFTMLD 175
           +L  +    +++   +G+ R++S+  L    K+ +K +L   V  ++ +S      T+  
Sbjct: 118 SLEAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMGVAYLMIMSFERQILTLSA 177

Query: 176 FI----SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
                 SA   ++L  A   +   +++I++F       D+ +    +  +L+M++QE++D
Sbjct: 178 LTPGEASARVVTMLVTALIILSSAMVLIVMF-------DVPFELWNFNKQLRMTRQEVRD 230

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E+K++ G P +K R +++ R   + +MM+    A ++ITNPTHY++AL Y    + AP +
Sbjct: 231 EMKETDGRPEVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHYSIALSY-SDGSGAPRV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG++LIA ++R IA EH +P++E P LAR+L+    +   IP   Y AVA+++  ++ 
Sbjct: 290 VAKGRDLIALQIRTIAQEHEVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQ 349


>gi|88704274|ref|ZP_01101988.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71]
 gi|88701325|gb|EAQ98430.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71]
          Length = 384

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 186/370 (50%), Gaps = 40/370 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      +TE P+ ++ E+A  +G  P SRE    +++L+ LI  +  +  G  S+  
Sbjct: 1   MAEEQTGQERTEPPTERRKEEARKKGQVPRSRE---LNTMLSLLITGVGLWVLG-GSLVD 56

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRL---------VIPGLLLFMMFGIG 108
           DL  +  S     +    D   +     H++ SA+ L         V+  L   ++ G  
Sbjct: 57  DLFAITISGFSVDRAAAFDAEQLPVRFMHMA-SATLLALAPLFAVTVVAALAGPLLMGGW 115

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITIS 165
           S+ +Q +    L  + P        +G+ R++S+  L    K+ +K +L   V  ++ ++
Sbjct: 116 SFSVQAM-AFKLEKLDPV-------KGLGRVFSLKGLAELAKALIKFLLLMAVAYLMIMA 167

Query: 166 LTENYFTMLDFISANPHS----ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
              +  T+         S    +L  A   +   +++I++F       D+ +    +  +
Sbjct: 168 FERDILTLSALTPGEASSRVVSMLVIALIVLSSAMVLIVMF-------DVPFELWNFNKQ 220

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           L+M++QE++DE+K++ G P +K R +++ R   + +MM+    A ++ITNPTH ++AL Y
Sbjct: 221 LRMTRQEVRDEMKETDGRPEVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHVSIALSY 280

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
                 AP +VAKG++L+A ++R IA EH++P++E P LAR+L+    +   IP   Y A
Sbjct: 281 ADGAG-APRVVAKGRDLLALQIRTIATEHDVPLYEAPPLARALYASTEVGDEIPGDLYLA 339

Query: 342 VAQLIYKIYH 351
           VA+++  ++ 
Sbjct: 340 VARVLAYLFQ 349


>gi|160939623|ref|ZP_02086971.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437414|gb|EDP15178.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC
           BAA-613]
          Length = 353

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 183/355 (51%), Gaps = 9/355 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHV 64
           A + KTE  + K+ +D   +GN   S + +   S+L  L + L   +P +Y S    +H+
Sbjct: 2   AAEEKTEKATPKRRQDERKKGNVFQSNDVAAVCSLL-VLFHSLKALAPMMYESFGECMHL 60

Query: 65  LLASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
             + A+   +  ++    +F+   L    + L  P L + ++  +     Q     + + 
Sbjct: 61  FFSYASSPDIFWQEGGKGLFMKAVLVFFKASL--PLLFIGVLTAVIVTFFQTRMAFSWDV 118

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  F R+S  +G KR++S+ +++  +KS +KI ++G ++   L      +   +     
Sbjct: 119 LKFKFDRISPLKGFKRMFSLRSVIELLKSLIKITVLGWVVWFFLKGRLTELTGLMEGTVA 178

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S L +   TV  ++  + +    L  +D  + + ++   L+MSKQEIK+E KQ+ G+P I
Sbjct: 179 SALIYVGNTVVSLVDTVGIAFVFLGAVDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDPQI 238

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + +   R     +MM+    A ++I NPTH+A+AL Y   +N APV++AKG + +A K
Sbjct: 239 KGKIREKQRQMASRRMMQNVPNADVVIRNPTHFAVALGYDSGKNRAPVVLAKGADHLALK 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHKKI 354
           + ++A    + I E+  LAR L+  V ++  IP  +Y+ VA++   +YK+  K +
Sbjct: 299 IVEVAEASGVYIMEDRPLARGLYDTVEVDMEIPEEYYQTVAKILAFVYKLQKKDM 353


>gi|54308128|ref|YP_129148.1| flagellar biosynthesis protein FlhB [Photobacterium profundum SS9]
 gi|46912554|emb|CAG19346.1| putative flagellar biosynthetic protein FlhB [Photobacterium
           profundum SS9]
          Length = 376

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 194/358 (54%), Gaps = 12/358 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  + +TE  + +K+E A  +G    S+E +  + ++   + L+++   G+    +
Sbjct: 1   MSDSDGQE-RTEDATPRKLEQAREKGQVARSKELASVAVLVMGAVSLIWY-GEGLGKALA 58

Query: 61  DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           ++   + S ++ ++ D+S +   +LT +      L +  ++LF+   IG+  +  +   +
Sbjct: 59  EIMTQMFSLSREEIYDLSRLFSIMLTAIWSVVFPLGLVLVVLFLAALIGAAGLGGVS-FS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +    P   +++   G KR++ + + V  +KS +K++LV  +    +   Y ++ DF+  
Sbjct: 118 VEAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVAGVAAYLM---YSSLNDFLLL 174

Query: 180 N----PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +    P +I +HA   + + +++I   +  +  +D+ +   Q   +LKM+KQE+KDE K 
Sbjct: 175 SLEIYPSNI-FHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKD 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G P +K R + + R   + +MM    +A +II NP H+++ALRY    + AP+++AKG
Sbjct: 234 TEGKPEVKGRIRMLQREMAQRRMMADVPQADVIIINPEHFSVALRYDPKLDSAPIVIAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +  A K+R+IA +HNI I   P LAR+++    +   IP   + AVAQ++  I+  K
Sbjct: 294 VDHTALKIREIANKHNIDIVSAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351


>gi|312111661|ref|YP_003989977.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1]
 gi|311216762|gb|ADP75366.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1]
          Length = 360

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 140/234 (59%), Gaps = 6/234 (2%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K ++ R+   +G+KRI S+  LV  +KS +KI +VG +    L      +L   + +  
Sbjct: 127 LKINWSRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLE 186

Query: 183 SILYH-AFFTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           + L   A  TV+  L     LLF+A   + D  +   ++   ++MSKQ+IKDE K++ G+
Sbjct: 187 ATLSSLASLTVKMGLYASFALLFLA---IFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGD 243

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK+R K   R     +MM+   +A ++ITNPTHYA+AL+Y   + DAP++VAKG + +
Sbjct: 244 PLIKSRIKQKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYV 303

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K++++A EH++   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 304 ALKIKQLAKEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357


>gi|295399827|ref|ZP_06809808.1| flagellar biosynthetic protein FlhB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978230|gb|EFG53827.1| flagellar biosynthetic protein FlhB [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 360

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 140/234 (59%), Gaps = 6/234 (2%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K ++ R+   +G+KRI S+  LV  +KS +KI +VG +    L      +L   + +  
Sbjct: 127 LKINWSRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLE 186

Query: 183 SILYH-AFFTVRKVLI--MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           + L   A  TV+  L     LLF+A   + D  +   ++   ++MSKQ+IKDE K++ G+
Sbjct: 187 ATLSSLASLTVKMGLYASFALLFLA---IFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGD 243

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK+R K   R     +MM+   +A ++ITNPTHYA+AL+Y   + DAP++VAKG + +
Sbjct: 244 PLIKSRIKQKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYV 303

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K++++A EH++   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 304 ALKIKQLAKEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357


>gi|15645389|ref|NP_207563.1| flagellar biosynthesis protein FlhB [Helicobacter pylori 26695]
 gi|3023763|sp|P56416|FLHB_HELPY RecName: Full=Flagellar biosynthetic protein flhB
 gi|2313898|gb|AAD07819.1| flagellar biosynthetic protein (flhB) [Helicobacter pylori 26695]
          Length = 358

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L+     L++P L++ ++    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+      L  I++L         +D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKNKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336


>gi|297582018|ref|ZP_06943937.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385]
 gi|297533713|gb|EFH72555.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385]
          Length = 376

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 184/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDGQE-RTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYNTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|254506872|ref|ZP_05119011.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16]
 gi|219550157|gb|EED27143.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16]
          Length = 376

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 188/362 (51%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   + L++F    + G+Y+
Sbjct: 1   MAESDGQE-RTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVALMWFGDSLARGLYT 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V   L  L       + E   H+      L    S ++   L+L  +F         +  
Sbjct: 60  VMERLFSL------SREEIFDHVKLFDIALGSLTSLILPLILILVTLFVAAVAGAAGVGG 113

Query: 118 LN--LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172
           ++  +    P   +++   G+KR+  I + V  +KS +K+ LV  +   +  +  E+ F 
Sbjct: 114 ISFSVEAAMPKLSKMNPLSGLKRMVGIQSWVELIKSILKVALVSGMAFYLINAAKEDLFQ 173

Query: 173 M-LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           + +D    N    ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KD
Sbjct: 174 LSMDVFPQN----IFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K++ G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++
Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNTDRAPIV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + +A K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++ 
Sbjct: 290 VAKGTDHMALKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|16082735|ref|NP_395181.1| needle complex export protein [Yersinia pestis CO92]
 gi|31795273|ref|NP_857735.1| needle complex export protein [Yersinia pestis KIM]
 gi|31795476|ref|NP_857930.1| needle complex export protein [Yersinia pestis KIM]
 gi|45478537|ref|NP_995364.1| putative type III secretion protein YscU [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51593916|ref|YP_068483.1| yscU; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108793657|ref|YP_636807.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|149192692|ref|YP_001293924.1| putative type III secretion protein [Yersinia pestis CA88-4125]
 gi|165927774|ref|ZP_02223606.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940072|ref|ZP_02228606.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011729|ref|ZP_02232627.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214469|ref|ZP_02240504.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401916|ref|ZP_02307402.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422435|ref|ZP_02314188.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422465|ref|ZP_02314218.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422883|ref|ZP_02314636.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426855|ref|ZP_02318608.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186897581|ref|YP_001874692.1| YscU/HrpY family type III secretion protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229896863|ref|ZP_04512023.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|229900218|ref|ZP_04515354.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491102|ref|ZP_06208174.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM
           D27]
 gi|294496841|ref|YP_003560538.1| needle complex export protein [Yersinia pestis Z176003]
 gi|322836573|ref|YP_004210069.1| type III secretion appartus protein YscU [Yersinia pestis Java 9]
 gi|57015240|sp|P69986|YSCU_YERPE RecName: Full=Yop proteins translocation protein U
 gi|57015241|sp|P69987|YSCU_YERPS RecName: Full=Yop proteins translocation protein U
 gi|475126|gb|AAA27681.1| yscU [Yersinia pseudotuberculosis]
 gi|2996233|gb|AAC62556.1| Yop proteins translocation protein U homolog [Yersinia pestis KIM
           10]
 gi|3822064|gb|AAC69784.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832467|emb|CAB54924.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357159|gb|AAS58555.1| putative type III secretion protein YscU [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591613|emb|CAF25417.1| yscU; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782204|gb|ABG16259.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|148872350|gb|ABR14840.1| putative type III secretion protein [Yersinia pestis CA88-4125]
 gi|165911982|gb|EDR30625.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920210|gb|EDR37511.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989336|gb|EDR41637.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204362|gb|EDR48842.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958173|gb|EDR55194.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958672|gb|EDR55693.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958702|gb|EDR55723.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048644|gb|EDR60052.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054154|gb|EDR63981.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700607|gb|ACC91235.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229686738|gb|EEO78818.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700134|gb|EEO88173.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|262363852|gb|ACY60572.1| needle complex export protein [Yersinia pestis D106004]
 gi|262364009|gb|ACY64346.1| needle complex export protein [Yersinia pestis D182038]
 gi|270334845|gb|EFA45624.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM
           D27]
 gi|294352429|gb|ADE66486.1| needle complex export protein [Yersinia pestis Z176003]
 gi|317374477|gb|ADV16652.1| type III secretion inner membrane protein [Yersinia pestis]
 gi|321161347|gb|ADW67053.1| type III secretion appartus protein YscU [Yersinia pestis Java 9]
          Length = 354

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 180/338 (53%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI DA  +G    S+E  + ++++  L  +L   S   +   S L  +L  
Sbjct: 4   EKTEQPTPKKIRDARKKGQVAKSKEV-VSTALIVALSAMLMGLSDYYFEHFSKL--MLIP 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP  K
Sbjct: 61  AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I    
Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK++++ 
Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKIA 
Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +PI +   LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338


>gi|325109030|ref|YP_004270098.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM
           5305]
 gi|324969298|gb|ADY60076.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM
           5305]
          Length = 357

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 177/357 (49%), Gaps = 19/357 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    K+E P+ ++  +A N+GN   S + +  + +LA    L+F        +  D+ 
Sbjct: 3   DDDQGEKSEDPTDQRRREARNQGNVAKSVDVNAAAIMLAATGGLMF--------LGPDIA 54

Query: 64  VLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
              A   +R LE       D   ++    ++  + +   +P +LL ++  + + L Q   
Sbjct: 55  KGFAGLLRRYLEGPPVLELDRFMVMREFWNIFQAVAGFALPFMLLMLLTAVVANLAQIGV 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +     +   ++R++   G +RI+S+     F  S  KI+ +  +    L      +   
Sbjct: 115 LFTTEPLGFKWQRINPVSGFQRIFSVAAFAKFGTSVGKIVAMAGVACWFLYLKLPALQGM 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIK 234
             + P  IL      + ++   + L +  + +LD  +S+ +W     LKMSKQEI+DE+K
Sbjct: 175 GQSEPSVILGTIGSVILELAFQLALAMLIIALLD--YSFQKWKHEQDLKMSKQEIRDEMK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
              G+P I+ R+K   R     K + A   A +++TNPTH ++AL+Y  T++ APV+VAK
Sbjct: 233 NMDGDPHIRQRRKEAHRKLAEAKELNAVRDADVVLTNPTHLSVALKYDSTKHPAPVVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G   IA ++R+IA E+N+PI E   LAR+L++ V +   IP   Y+   +++  +Y 
Sbjct: 293 GAGEIAMRIREIARENNVPIIERKPLARALYRDVKVGHPIPAEMYEVFVEIMAYVYR 349


>gi|84621748|ref|YP_449120.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|9711589|dbj|BAB07858.1| HrcU [Xanthomonas oryzae pv. oryzae]
 gi|84365688|dbj|BAE66846.1| HrcU protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 359

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y V   +  L  
Sbjct: 3   EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFVDH-MRALTR 58

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +         D + I   L H+ +    L++P L   ++ G+     Q     +L  V P
Sbjct: 59  IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  I 
Sbjct: 119 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVMWVGIRTLMPMIIGLAYETPLDIS 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E K+S G+P IK
Sbjct: 179 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     +  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  AIP   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 335


>gi|312884898|ref|ZP_07744588.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367375|gb|EFP94937.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 376

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 195/361 (54%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS---PGIYS 57
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   I L++F S    G++S
Sbjct: 1   MAESDGQE-RTEEATPRRLQQAREKGQVARSKELASVSVLIIGAIALMWFGSFLAKGLFS 59

Query: 58  VTSDLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           V   L  L    ++ ++ D+  +   +L  +      L++  L+LF+   IG+  +  I 
Sbjct: 60  VMGRLFDL----SREEIFDLDKLFDIILGSVGELVFPLLLILLVLFLAALIGAAGVGGIN 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM 173
             ++    P + +++   G+KR+  + + V  +KS +K+ LV  +   +     ++ F +
Sbjct: 116 -FSVEAAMPKWSKMNPLSGLKRMVGVQSWVELIKSILKVTLVSGMAFYLINDAKQDLFQL 174

Query: 174 -LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            LD    N    ++HA   +   +++I   +  +  +D+ +   Q  ++LKM+KQE+KDE
Sbjct: 175 SLDVYPQN----IFHALDILLNFILLISCTLLLVAAIDVPFQIWQHANQLKMTKQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K++ G P +K R + + R   + +MM    +A +I+TNP HY++ALRY Q  + AP++V
Sbjct: 231 YKETEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHYSVALRYRQDTDKAPIVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG + +A K+R++A EH+I I   P L R+L+    +   IP   + AVAQ++  ++  
Sbjct: 291 AKGTDHMALKIREVAREHDIYIVPAPPLTRALYFSTELEQEIPDGLFTAVAQILAYVFQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           acetobutylicum ATCC 824]
 gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824]
 gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           acetobutylicum EA 2018]
          Length = 610

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 191/361 (52%), Gaps = 24/361 (6%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE  + K+  +A  +G    S+E  L     A L+ + F  S G  +  + L V+
Sbjct: 260 ADSDKTEEATPKRKSEARKKGQVARSKEVPL----AATLVAITFIISLGGQTFFNGLGVM 315

Query: 66  LASATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           + +  Q  +       D+  I+  +    L+A + +    +  M+ GI + + Q   +  
Sbjct: 316 MQTFFQSYIHSNLTELDLRRIIIFVI---LNAGKFIFMFGVPVMVVGIVANIAQTGWITT 372

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF--- 176
              +KP  K+++   G KRI+S+  +VN +K  V + ++  +    L  NY  + +    
Sbjct: 373 TEPIKPDLKKLNPISGFKRIFSMTTIVNLLKDLVVVAVLSVVGYKFLMSNYGDIANLNNL 432

Query: 177 -ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            +   P + L +   ++ +++ +I++ IA     D  ++ +++   +KM+K E+K+E KQ
Sbjct: 433 MVQYIPQAYLSYVI-SIFRIVALIMIVIAGF---DFVYNRYKYKKDMKMTKHEVKEEFKQ 488

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P IK +++   R  +   M+     AT++ITNPTH ++A++Y +  + AP +VAKG
Sbjct: 489 AEGDPEIKGKRRQRMREIVTRTMLSKVPDATVVITNPTHISVAIKYERGVDKAPTVVAKG 548

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ---LIYKIYHK 352
            +  A ++++IA E+N+PI E   LAR +FK+V ++  IP   Y+ VA+   L+YK+  K
Sbjct: 549 ADRTALRIKEIAKENNVPIMENKPLARLIFKKVEVDEQIPAEMYQTVAEILALVYKLNKK 608

Query: 353 K 353
           +
Sbjct: 609 Q 609


>gi|89098625|ref|ZP_01171507.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911]
 gi|89086587|gb|EAR65706.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911]
          Length = 360

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 147/260 (56%), Gaps = 6/260 (2%)

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           P +L+ M+ G  +  +Q   + +   ++   +++   +G KRI+S+  +V  +KS +KI 
Sbjct: 101 PVMLIAMIAGAAANYMQVGFLFSTEAIQFKLEKIDPIKGFKRIFSMRAIVELLKSVLKIG 160

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILY-HAFFTVRKVLIM--ILLFIATLTVLDIGW 213
            VG +  + L      +L     +P + L   A  TV+  L     LLF   L+VLD  +
Sbjct: 161 FVGAVTFVVLWMRIDEILMLSQKSPGAALIILASLTVQMGLFASAALLF---LSVLDYLY 217

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
             + +   ++MSKQ+IKDE K   G+P+IK++ K   R     +MM+    A ++ITNPT
Sbjct: 218 QKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKIKQKQREMAMSRMMQEVPNADVVITNPT 277

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
           H+A+AL+Y + + DAP +VAKG + +A+K++ IA E+ +   E   LAR+L+ Q  I S 
Sbjct: 278 HFAIALKYDEEKQDAPYVVAKGADYVAQKIKYIAKENEVITVENRPLARALYSQTEIGST 337

Query: 334 IPPVFYKAVAQLIYKIYHKK 353
           IP  F+K VA+++  +Y  K
Sbjct: 338 IPEEFFKTVAEILAYVYRTK 357


>gi|229524122|ref|ZP_04413527.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis
           VL426]
 gi|229337703|gb|EEO02720.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis
           VL426]
          Length = 376

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 183/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  VLAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|308184555|ref|YP_003928688.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180]
 gi|308060475|gb|ADO02371.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180]
          Length = 358

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L+     L++P L++ M+    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPLLIILMVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTVL-------DIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+      L  I++L  L       D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336


>gi|121586826|ref|ZP_01676608.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80]
 gi|153803039|ref|ZP_01957625.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3]
 gi|153825586|ref|ZP_01978253.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2]
 gi|229522073|ref|ZP_04411490.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80]
 gi|254226357|ref|ZP_04919946.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51]
 gi|121548993|gb|EAX59032.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80]
 gi|124121437|gb|EAY40180.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3]
 gi|125621107|gb|EAZ49452.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51]
 gi|149740737|gb|EDM54836.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2]
 gi|229340998|gb|EEO06003.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80]
          Length = 376

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 183/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|121727196|ref|ZP_01680363.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52]
 gi|153828614|ref|ZP_01981281.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39]
 gi|262191369|ref|ZP_06049559.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93]
 gi|121630441|gb|EAX62834.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52]
 gi|148875885|gb|EDL74020.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39]
 gi|262032744|gb|EEY51292.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93]
          Length = 376

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 183/365 (50%), Gaps = 26/365 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F          
Sbjct: 1   MAESDG-QERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWF--------GE 51

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL--------SLSASRLVIPGLLLFMMFGIGSYLI 112
            L   L  A QR  E     +F L  L              L++    LF+   IG+  +
Sbjct: 52  ILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGV 111

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTE 168
             I   +     P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  +
Sbjct: 112 GGIS-FSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKD 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +   LD    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 171 LFQLSLDVYPQN----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 227 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 287 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 346

Query: 349 IYHKK 353
           ++  K
Sbjct: 347 VFQLK 351


>gi|167838295|ref|ZP_02465154.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           MSMB43]
          Length = 401

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 182/356 (51%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S     +  
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLS---GPIGE 55

Query: 61  DLHVLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  ++ +A    +    D + ++     LSL     + P L L  +  + + +     +
Sbjct: 56  HLRTMMRAAFSFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMALGGWL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           ++    +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   
Sbjct: 116 VSTKTFELKFDRLNPVTGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLA 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +    + L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ 
Sbjct: 176 TQPLDAALAGALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R +   R+  R +MM     A +++TNPT +A+AL+Y   E  AP +VAKG N
Sbjct: 236 GDPHVKGRIRQQQRAMARRRMMANVPTADVVVTNPTRFAVALKYTDGEMRAPKVVAKGVN 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A ++R++A EH +P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 296 LVAARIRELAAEHRVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351


>gi|10955567|ref|NP_052408.1| YscU [Yersinia enterocolitica]
 gi|332163589|ref|YP_004424931.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|4324354|gb|AAD16831.1| YscU [Yersinia enterocolitica W22703]
 gi|318608194|emb|CBY78168.1| type III secretion inner membrane protein
           (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar
           export components) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667819|gb|ADZ44462.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 354

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 180/338 (53%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI DA  +G    S+E  + ++++  L  +L   S   +   S L  +L  
Sbjct: 4   EKTEQPTPKKIRDARKKGQVAKSKEV-VSTTLIVALSAMLMGLSDYYFEHLSRL--MLIP 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP  K
Sbjct: 61  AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I    
Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK++++ 
Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKIA 
Sbjct: 241 FHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +PI +   LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338


>gi|212637760|ref|YP_002314285.1| flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
 gi|212559244|gb|ACJ31698.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
          Length = 393

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 183/350 (52%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+  +KTE  + +K++ A +EG  P S++ +  + I+ C + +L   +  I +  +
Sbjct: 17  MSNKDSGQSKTEQATPQKLKKAKSEGQVPRSKDLASSALIIGCSL-MLTTSADWIAAKVA 75

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T+ +L++   ++  L    L    ++ P  L+  +  + +  +   P+ N 
Sbjct: 76  KMTRTNMSFTKAQLDEPGMMMRHLGQSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 135

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    GI R+ S+ +LV  +KS +KI+L+  I+ + L +N  T+L F    
Sbjct: 136 KNAAFKYSRIDPIAGIGRMASVKSLVELVKSILKIVLLMGIMWLFLEKNLQTLLSFNQLP 195

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   +  + L +  +T +D+ + Y   +++LKMS QE+KDE KQ  G P
Sbjct: 196 VDEAVSKGIEMLSLGMFFLGLGLLLITFIDVPYQYWHHHNELKMSLQEVKDEHKQQDGKP 255

Query: 241 IIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            IK +    Q+ I+RSR       +  +A +++ NPTHYA+AL+Y   + DAP ++ KG 
Sbjct: 256 EIKAKIRQMQQRISRSRAD----ISVPKADVLLVNPTHYAVALKYDIDKADAPYVLTKGT 311

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + +A  MR++A  H++ + E P L R+++    ++  IP   + A+A ++
Sbjct: 312 DELALHMREVAKRHDVEVIELPPLTRAIYYSTKVDQQIPAALFIAIAHVL 361


>gi|28373013|ref|NP_783682.1| YscU [Yersinia enterocolitica]
 gi|32470295|ref|NP_863530.1| YscU [Yersinia enterocolitica]
 gi|122815819|ref|YP_001004085.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579353|gb|AAK69230.1|AF336309_25 YscU [Yersinia enterocolitica]
 gi|23630585|gb|AAN37541.1| YscU [Yersinia enterocolitica]
 gi|121663693|emb|CAL10055.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923238|emb|CBW54704.1| YscU, T3SS component, autocleavable regulator,PMID 19165725
           [Yersinia enterocolitica (type O:8)]
          Length = 354

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 180/338 (53%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI DA  +G    S+E  + ++++  L  +L   S   +   S L  +L  
Sbjct: 4   EKTEQPTPKKIRDARKKGQVAKSKEV-VSTALIVALSAMLMGLSDYYFEHLSRL--MLIP 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP  K
Sbjct: 61  AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I    
Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK++++ 
Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKIA 
Sbjct: 241 FHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +PI +   LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338


>gi|70729046|ref|YP_258780.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf-5]
 gi|68343345|gb|AAY90951.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens Pf-5]
          Length = 378

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 181/356 (50%), Gaps = 11/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  + +LA    LL +       +  
Sbjct: 1   MAESESGQDKTEEPTEKRKKDSREKGEIARSKELNTLAIMLAGAGGLLVYGGGLALDLLE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFG---IGSYLIQRI 115
            + +  +   +  L   +  ++LL    +++ A + V+  LLL  + G   +G +L    
Sbjct: 61  IMRLNFSLPREVLLSPGAMGLYLLHSGKIAILAVQPVLLTLLLAAVIGPISLGGWLFAG- 119

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                  + P F R++   G+KR++S   L+  +K+  K  LV  +    L+ +   +L 
Sbjct: 120 -----KSLAPKFSRMNPANGLKRMFSPTALIELLKALAKFALVLFVALSVLSADIDDLLR 174

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
                    + H+   V    + +   +  +  +D+    +Q + KL M+KQE++DE K 
Sbjct: 175 IAHEPLEKAIIHSIQVVGWSTLWMACGLILIAAVDVPVQLYQAHKKLLMTKQEVRDEHKD 234

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G P +K R + + R   + +MM A   A ++ITNPTHYA+AL+Y   +  APVL+AKG
Sbjct: 235 QEGRPEVKQRIRQLQREMSQRRMMAAIPEADVVITNPTHYAVALKYDAEKGGAPVLLAKG 294

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +A ++R+IA  H + + E P+LARS+F    +   IP   Y AVAQ++  +Y 
Sbjct: 295 SDFLALQIREIAVAHEVMLLESPALARSIFYSTELEEEIPAGLYLAVAQVLAYVYQ 350


>gi|307546924|ref|YP_003899403.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
 gi|307218948|emb|CBV44218.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
          Length = 388

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 135/253 (53%), Gaps = 13/253 (5%)

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           LV P LL       G +LI      +   +KP   +++  +G+KRI+    LV   K+  
Sbjct: 107 LVAPALL-------GGWLI------SAKSLKPQASKLNPLKGLKRIFGTQALVELAKAIA 153

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           K +LVG++    L  +    +  +S   H  L  A     +   +++L +  + ++D+ +
Sbjct: 154 KSVLVGSVGMAYLYLHRGEFMALMSQPIHQALARAMGMAAEACGLMVLTLLVVILIDVPY 213

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
                  +L+M+K E+K E K+S G+P +K R +   ++  R +MM     A +IITNPT
Sbjct: 214 QLWSHAKQLRMTKDEVKREHKESEGDPQVKGRIRQQQQAMARGRMMSQVPEADVIITNPT 273

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
           HYA+AL Y QT   AP +VAKG + +A ++R++  E  +P+ E   LARSL+  V + + 
Sbjct: 274 HYAVALVYEQTGMAAPRVVAKGADAVAARIRELGEEAGVPLLEAAPLARSLYHHVDLEAE 333

Query: 334 IPPVFYKAVAQLI 346
           IP   Y AVA+++
Sbjct: 334 IPAALYTAVAEVL 346


>gi|15611774|ref|NP_223425.1| flagellar biosynthesis protein FlhB [Helicobacter pylori J99]
 gi|12230110|sp|Q9ZL73|FLHB_HELPJ RecName: Full=Flagellar biosynthetic protein flhB
 gi|4155273|gb|AAD06292.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 358

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 186/353 (52%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L+     L++P L++ M+    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+           K IL G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSL-----------KKILDGSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI----LLFIATLTVL-------DIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+      L  I++L  L       D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   ++ +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKSNVVVTNPTHYAVALKF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|148546753|ref|YP_001266855.1| flagellar biosynthesis protein FlhB [Pseudomonas putida F1]
 gi|148510811|gb|ABQ77671.1| flagellar biosynthetic protein FlhB [Pseudomonas putida F1]
          Length = 380

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 178/369 (48%), Gaps = 36/369 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASL-----------------FSSILAC 43
           M+E+++  +KTE P+ K+   A  +G    S+E +                   +  L  
Sbjct: 1   MAESESGQDKTEEPTEKRKRTAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
           ++ + F  +  I      +   L ++ +  +  +  I+ LL  ++  A   +  G  LF 
Sbjct: 61  MMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPILILLFVIAFVAP--IALGGFLFS 118

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
               GS L            +P F R++   GIKR++S+N L   +K+  K  ++  +  
Sbjct: 119 ----GSLL------------QPKFSRMNPLSGIKRMFSMNALTELLKALAKFFVILVVAI 162

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
           + L  +   +L   +      + H+   V    + +   +  +   D+ +   Q ++KLK
Sbjct: 163 VVLVNDRQALLSIANEPLDQAIIHSVQVVGWSALWMAAGLLLIAAADVPFQLWQAHNKLK 222

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M+KQE++DE K S G P +K R + + R   + +MM A   A +IITNPTHYA+AL+Y  
Sbjct: 223 MTKQEVRDEYKDSEGKPEVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDP 282

Query: 284 TEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
            +   AP+L+AKG + IA K+R+I  EH + I E P+LAR+++    I   IP   Y AV
Sbjct: 283 EKGGVAPLLLAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAV 342

Query: 343 AQLIYKIYH 351
           AQ++  ++ 
Sbjct: 343 AQVLAYVFQ 351


>gi|37527636|ref|NP_930980.1| Type III secretion component protein SctU [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787071|emb|CAE16146.1| Type III secretion component protein SctU [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 351

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 179/339 (52%), Gaps = 5/339 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S E    S IL  LI ++   S       S L ++ A+
Sbjct: 4   EKTEKPTPKKLRDARKKGQVTKSNEVVSTSLILG-LIGMIMVMSEYYLEHLSKLMLIPAN 62

Query: 69  ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             ++   +  +H+V    +L      L +P L +  +  + S+  Q   +L+ + +KP  
Sbjct: 63  LLEKPFPQAFNHVV---ENLMQELVYLCLPILSVSALLSLVSHFAQYGFLLSGHSIKPDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+++  EG KRI+SI +LV F+KS +K+ L+ T++ I+L  N   +L         I+  
Sbjct: 120 KKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWITLAGNLQALLRLPECGTRCIVPV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + +++ +  + +  +++ D  + ++Q   +L+MSK EIK E K+S G+P IK++++
Sbjct: 180 LGIMLTQLMTVCGIGLIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +      M  +   +++I+ NPTH A+ +RY + E   P++  K  N  A ++R+IA
Sbjct: 240 QFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTNAQALQVRRIA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            E  IP+ +   LAR+L++   I+  IP    +A A+++
Sbjct: 300 EEEGIPVLQRIPLARALYQDGLIDQYIPADLIQATAEVL 338


>gi|83594153|ref|YP_427905.1| flagellar biosynthesis protein FlhB [Rhodospirillum rubrum ATCC
           11170]
 gi|83577067|gb|ABC23618.1| Flagellar biosynthetic protein FlhB [Rhodospirillum rubrum ATCC
           11170]
          Length = 356

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 180/346 (52%), Gaps = 7/346 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTE PSS+K+  A  +G    S+E   F  +   L  +          V   + 
Sbjct: 3   DDDKDSKTEDPSSRKLGKAREDGQVAQSQEVKSFLMLGGALFMVAVMGGWIADKVALRVR 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP---GLLLFMMFGIGSYLIQRIPVLNL 120
           V L       L+ +     L   L      L +P    ++L ++ G+G + +    + + 
Sbjct: 63  VFLEQPDTFHLDAVGLRDLLARLLLDIGLVLAMPIAMFIVLAILGGVGQFGL----IFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +++S   G KR++S+  LV  +K  VK+++V  I+   +     T   F+  +
Sbjct: 119 KKITPELQKISPLAGFKRLFSVRALVEGVKGIVKVVVVSAIVAALMLPRLRTPELFMDQD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +  +LI ++  +  +   D  +  ++   +LKM+KQE+KDE K + G+P
Sbjct: 179 ILVTLGQIHRLLVVLLISVVTIVGAIAAADFAFQKYKHIEELKMTKQEVKDEHKNAEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK++ + +   R R +MM     A+++ITNPTH+A+AL+Y      APVLVAKGQ+ IA
Sbjct: 239 QIKSKIRQLRMRRARERMMARVPEASVVITNPTHFAVALKYDMDMMSAPVLVAKGQDFIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R++A E+ +PI E P LAR+LF  V I+  IPP  YKAVA++I
Sbjct: 299 LKIREVAEENEVPIVENPPLARALFAAVEIDHEIPPDHYKAVAEVI 344


>gi|121997283|ref|YP_001002070.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1]
 gi|121588688|gb|ABM61268.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1]
          Length = 391

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 61/380 (16%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREAS-----------------LFSSILACL 44
            E++    KTE P+ K+ E++  +G  P SRE +                    + L  L
Sbjct: 3   QESEDGQEKTEDPTPKRREESRKKGQVPRSRELTTMLLLLVAAGALLALGPFMGNQLTAL 62

Query: 45  IYLLF------FFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
           +   F       + PGI  V   LH  L          ++ + F+   L   A+ ++ P 
Sbjct: 63  LEWSFTIDRSHIYDPGI--VIERLHEALGRGL------LTVLPFIAVML---AAAVIAPT 111

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
            L    F             + + ++P  +++S  +G +R++     V   K+  K++++
Sbjct: 112 ALGGWSF-------------SFHPMQPKPEKLSPIKGFQRMFGTKAAVELGKALGKVLVI 158

Query: 159 GTI---ITISLTENYFTM----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           G     + +   +N++TM    L+   A    + Y  FF       ++ L +  +  +DI
Sbjct: 159 GGTAVGLFVLFWDNFYTMSRAPLEPSMAEGMRLFYIFFF-------LLALSMLVVVAIDI 211

Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            +  +    K++M++QE+K+E KQ+ G P +K R +   R     +MME    A ++ITN
Sbjct: 212 PYQIYDHTQKIRMTRQEVKEEFKQTEGKPEVKQRVREQQREMTNRRMMENVPDADVVITN 271

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P HYA+AL+Y Q+   AP +VAKG +L+A ++R++A E++I IF+ P LAR+L+    ++
Sbjct: 272 PAHYAVALKYDQSTMRAPTVVAKGADLLAARIRELAEENDILIFQAPPLARALYHSADLD 331

Query: 332 SAIPPVFYKAVAQLIYKIYH 351
             IP   Y AVAQ++  +Y 
Sbjct: 332 QEIPGALYFAVAQVLAYVYQ 351


>gi|258622507|ref|ZP_05717529.1| flagellar biosynthetic protein [Vibrio mimicus VM573]
 gi|262173373|ref|ZP_06041050.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
 gi|258585207|gb|EEW09934.1| flagellar biosynthetic protein [Vibrio mimicus VM573]
 gi|261890731|gb|EEY36718.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
          Length = 375

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 186/357 (52%), Gaps = 24/357 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E+ + D KTE  S++KI+ A   G  P ++E   F++    L  +L F++    I+  
Sbjct: 1   MNEHSSQD-KTEQASAQKIKKARQGGQVPRAKE---FTTAAIFLAVVLLFYAQLDHIWQS 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +     S T++ L +   +V  L         +++P   + ++  +GS ++    + 
Sbjct: 57  MAGIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              ++ P   +++   GIKR++S  +LV  +KS +K++++  ++   L +N+   L  + 
Sbjct: 117 RPANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYL-DNHLQPLLGMQ 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATL---------TVLDIGWSYHQWYSKLKMSKQEI 229
             P             +LIM +LF   L          V+DI +   ++  +L+MSKQE+
Sbjct: 176 RLP--------LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQEL 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E KQ+ G P IK+R + I +   R K+ +    A +++TNPTHYA+AL+Y  + +DAP
Sbjct: 228 KEEFKQNEGRPEIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 288 FVVAKGVDETAIHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHIL 344


>gi|312962260|ref|ZP_07776752.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
 gi|311283597|gb|EFQ62186.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
          Length = 378

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 179/363 (49%), Gaps = 25/363 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  ++++A    LL +       +  
Sbjct: 1   MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGG----GLAL 56

Query: 61  DLHVLLA---SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYL 111
           DL  L+    S  +  L +   +   L H    A   V P L+  ++        +G +L
Sbjct: 57  DLLELMKHNFSLPREVLLNPDSMGQYLMHSGKIALLAVQPILITLLLAALIGPVALGGWL 116

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                      + P F R++   G+KR++S   LV  +K+  K IL+  +    L+ +  
Sbjct: 117 ------FAAGSMAPKFSRMNPAAGLKRMFSAKALVELLKALAKFILILFVALSVLSSDVD 170

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            +L        S + H+   V    + +   L+ IA +      W  H+   KL M+KQE
Sbjct: 171 DLLRIAHEPLESAIIHSVQVVGWSALWMSAGLIIIAAVDAPIQLWESHK---KLLMTKQE 227

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           ++DE K   G P +K R + + R   + KMM A   A ++ITNPTHYA+AL+Y   +  A
Sbjct: 228 VRDEHKDQEGRPEVKQRIRQLQREMSQRKMMAAVPDADVVITNPTHYAVALKYDPEKGGA 287

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P+L+AKG +  A K+R+IA  + I + E P LARS+F    ++  IP   Y AVAQ++  
Sbjct: 288 PMLLAKGSDFTALKIREIAVANEILLLESPELARSIFYSTDLDHEIPAGLYLAVAQVLAY 347

Query: 349 IYH 351
           +Y 
Sbjct: 348 VYQ 350


>gi|239815246|ref|YP_002944156.1| type III secretion exporter [Variovorax paradoxus S110]
 gi|239801823|gb|ACS18890.1| type III secretion exporter [Variovorax paradoxus S110]
          Length = 365

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 182/356 (51%), Gaps = 14/356 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY---LLFFFSPGIYS 57
           M+E D   ++ EA +  K++ A   G A  S      + ++A L++   +++    G  +
Sbjct: 1   MAEQDL--DRNEAATPYKLQRARERGQAAKS------TDVVAALVFGVAVVYLTWRGFGA 52

Query: 58  VTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           V S      A        D S +    L+     SA  L  P     M+  I   ++Q  
Sbjct: 53  VASQFRFDQALLIHAGRMDPSGVGLWPLIERALRSALTLAAPFFAAIMLAAIVGNMMQTG 112

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           P+L+   VK  F R++   G+K+++S+  L +  ++ VK+ L+G +  ++L         
Sbjct: 113 PILSFEPVKMDFTRINPVNGLKKLFSMRVLFDTARAIVKLALLGLVAFLALEALASQFYA 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             S +P   L      +  V + + L +  + +LD+ ++  ++  K++MS++E+KDE K 
Sbjct: 173 LASLSPVGYLRTLLDDLASVGLKMALVLTLIALLDLMYTRREFAKKMRMSQRELKDEAKH 232

Query: 236 SYGNPIIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
             G+P I+ R + + R  ++  + +  T  A ++ITNPTH A+AL+Y      +P L+AK
Sbjct: 233 REGDPRIRARLRELRRETLKRSLALRQTRNADMLITNPTHLAVALKYEHGRMASPQLLAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           G   +A  MR+IA  H IP+ + P LAR L+K++P++ ++PP  Y  VA++I  ++
Sbjct: 293 GAGHMAAAMREIAARHRIPVVQNPPLARRLYKELPVDHSVPPELYAQVARIIVWVF 348


>gi|268316329|ref|YP_003290048.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252]
 gi|262333863|gb|ACY47660.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252]
          Length = 360

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 182/350 (52%), Gaps = 8/350 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV-LL 66
           D K   P+ ++++ A  EGN   S+E +    +L   +  L    P  Y +        L
Sbjct: 5   DQKQFDPTPRRLQKAREEGNVFRSQE-TSAVLLLLGGLLTLALSLPYAYGLMRQFTARTL 63

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            SA    L   S ++  L    +   RL++P   LLL + FG+  +     P L     K
Sbjct: 64  MSAPFYPLTSGS-VIGALQEALMVLGRLLVPFFALLLVIAFGVNVWQTGWHPTLKPLLPK 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  +R+S   G++R++S   L N +K+ +KI +VG I  + +  +   +L+  + +  +I
Sbjct: 123 P--ERISPLRGLQRLFSSRGLFNVLKALLKIAIVGPIAFLVIYRHLPEILELHTHSLEAI 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L      + ++    L  +  L+  D  +   ++   LKM+ QE+KDE +++ G+P++K+
Sbjct: 181 LQATGLWMLQLAAYTLGALLLLSAADFAYEKWKYRQDLKMTAQEVKDEHRETEGDPMVKS 240

Query: 245 RQ-KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           R+ K       R ++  A  R+ ++ITNPTHYA+ALRY  +E  AP ++AKG    A ++
Sbjct: 241 RRLKKARELARRRRLDHAVLRSDVVITNPTHYAVALRYDPSEAPAPRVLAKGIRKRALRI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R +A EH IP+ E+P LAR+L+  VP    IP   Y AVA ++ +IY ++
Sbjct: 301 RALALEHGIPVVEDPPLARALYHNVPEEQEIPEELYLAVATILAEIYRQR 350


>gi|291519578|emb|CBK74799.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 239

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 138/239 (57%), Gaps = 10/239 (4%)

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFTMLDF 176
           +  ++P   + +   G KRI+S +++VN + +  KI LV  I  +S+     N F + D 
Sbjct: 1   MKPLQPKLSKFNPINGFKRIFSKDSIVNLLMALAKIALVCYISYVSIRNQANNIFILYDI 60

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIK 234
                 S L   F  +  V I I +    L  +D  ++Y +W   + +KM+KQE+KDE K
Sbjct: 61  ---GLKSALSLIFTLICDVGIKISIVYIILGFID--YAYQKWKFTNDMKMTKQEVKDEYK 115

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G+P IK RQK       R +MM+   +A ++ITNPTH A+A+ Y  T+++AP ++AK
Sbjct: 116 NTEGDPQIKGRQKQKMMESSRRRMMQNVPQADVVITNPTHIAVAILYDNTKDEAPRVIAK 175

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G++ +A K+++ A +  +PI E   LAR+L+  V I+  IPP  Y+AVA+++  +Y +K
Sbjct: 176 GEDYLALKIKEAAKDSGVPIVENKPLARALYATVEIDEIIPPELYQAVAEILAVVYTQK 234


>gi|289678968|ref|ZP_06499858.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           syringae FF5]
          Length = 329

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 170/325 (52%), Gaps = 1/325 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLF 325
            K+R+I   + I I E  +LARS++
Sbjct: 300 LKIREIGAHNEILILESAALARSIY 324


>gi|254469948|ref|ZP_05083353.1| translocation protein in type III secretion [Pseudovibrio sp.
           JE062]
 gi|211961783|gb|EEA96978.1| translocation protein in type III secretion [Pseudovibrio sp.
           JE062]
          Length = 377

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 174/346 (50%), Gaps = 4/346 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  ++  +G    S E +   S+ + + YL F +      +   +  L   
Sbjct: 8   EKTELPTPKRERESREKGQVAKSTEVTTTISLFSVIAYLWFSWDLNFSKLVGLMDDLADL 67

Query: 69  ATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           AT+R         VF +    +    +V+P + + +  GI    +Q   +  ++ + P  
Sbjct: 68  ATRRDFSSSAGEGVFGVFSTFMD---IVLPLIGVAIAAGIFGNFVQFGFLWAVDSIMPKL 124

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++S  EG KRI+S+  +V  +KS +KI+L+ T++  ++       ++ +S     I   
Sbjct: 125 SKISPAEGFKRIFSLKQVVQVLKSILKIVLLSTMLYFTVKYAIGAYINSLSCGIPCITNI 184

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +   ++ +L +  L    + +LD  +  H     LKM+K+E+K E K+S G+P IK ++K
Sbjct: 185 SGAIMKLILGISFLAFVGVAILDFMFQKHTHIKSLKMTKEEVKREHKESEGSPEIKGQRK 244

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            I++  +    +E T +A+ ++ NPTHYA+A+ Y   E   P++VAKG +L A KMR  A
Sbjct: 245 RISQEILMSDNLENTRKASAVVVNPTHYAVAISYRPDEVAVPLVVAKGLDLTALKMRAEA 304

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
               +PIF    LAR L  +V I   IP   + AVA+++  I   K
Sbjct: 305 EAAGVPIFANVKLARMLHAEVQIEELIPQDMFAAVAEILVWIDQNK 350


>gi|58579708|ref|YP_198724.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58424302|gb|AAW73339.1| HrcU [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 423

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y V   +  L  
Sbjct: 67  EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFVDH-MRALTR 122

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +         D + I   L H+ +    L++P L   ++ G+     Q     +L  V P
Sbjct: 123 IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 182

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  I 
Sbjct: 183 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDIS 242

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E K+S G+P IK
Sbjct: 243 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 300

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     +  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 301 GKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 360

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  AIP   ++ VA
Sbjct: 361 RAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 399


>gi|83646791|ref|YP_435226.1| flagellar biosynthesis pathway protein FlhB [Hahella chejuensis
           KCTC 2396]
 gi|83634834|gb|ABC30801.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis
           KCTC 2396]
          Length = 342

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 164/306 (53%), Gaps = 8/306 (2%)

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVF-LLTHLSLS------ASRLVIPGLLLFMMFGIG 108
           +SV+ DL     S  Q+   D + + F ++T  +         S ++ P L++ M+ G+ 
Sbjct: 21  WSVSQDLATRFFSLCQKLFADAASVDFDIITAKAWGIWIVSEVSWILSPLLVVMMVIGVL 80

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
             ++Q  PV + + +KP  KR++   G KR++SI  L   +K+ +K+ L+G+++  +L  
Sbjct: 81  CSIVQTGPVFSFHPIKPDIKRINPITGFKRLFSIKILFELVKNLIKLALLGSVLYWALAG 140

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
               +    + +  + L         ++  +   +  + ++D+ ++  ++   ++M+K+E
Sbjct: 141 LMPDLFGLTAKSAATALPVFIGYAAGIIFKLTAALLLIALIDMLFTRWEFMRNMRMTKKE 200

Query: 229 IKDEIKQSYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           +KDEIK+  G+P I+ ++K + R  R R     +   A +IITNP HYA+ ++Y   +  
Sbjct: 201 VKDEIKRREGDPHIRAKRKELERELRKRSGSAASVPEADLIITNPEHYAVVVKYDAKKMA 260

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +  KG + +AK +R +A +H +PI ++P LAR LFK+  I S IP   +  VA+ + 
Sbjct: 261 APTVTGKGGDAMAKHLRDLARQHQVPIIQDPPLARYLFKKTEIGSMIPEDAFVGVARALR 320

Query: 348 KIYHKK 353
           + Y  K
Sbjct: 321 RAYQIK 326


>gi|313681570|ref|YP_004059308.1| flagellar biosynthetic protein flhb [Sulfuricurvum kujiense DSM
           16994]
 gi|313154430|gb|ADR33108.1| flagellar biosynthetic protein FlhB [Sulfuricurvum kujiense DSM
           16994]
          Length = 355

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 183/360 (50%), Gaps = 38/360 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFS----SILACLIYLLF-----------FFSP 53
            KTE P++KK+EDA  EGN P S++         SILA L+   F           +FS 
Sbjct: 6   EKTEEPTAKKLEDARAEGNVPKSQDVVGVVVLFVSILAVLMMFTFIADRMLHLSQYYFSL 65

Query: 54  GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
               +  +L V LA  T ++        FL+  L +S         ++  + G+   + Q
Sbjct: 66  MRQPLDRELMVDLAVVTMKE--------FLIMALPVS---------IIVAVAGVFGTVAQ 108

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK---IILVGTIITISLTENY 170
                    + P+F ++   +G   ++++   +  +K  +K    + +G +      E  
Sbjct: 109 IGFNFTTKPLTPNFSKLDPIKGFANLFTLQKGLESIKITLKSFTALGIGFLYFWYFVEEL 168

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
            T+  F   +    L      +  V+++I+   A   V+D+      ++ KLKMS QEIK
Sbjct: 169 PTVALFTLQDQMGWLRDKAIVLASVMLLIIFVYA---VIDLFLVRKHYFDKLKMSLQEIK 225

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE+K   G+P IK + + I     R +MM +   A ++ITNPTHYA+A+ Y + +++APV
Sbjct: 226 DEMKNMEGDPHIKAKIRQIQMQAARKRMMTSVPTADVVITNPTHYAVAIVYDENKHNAPV 285

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG + +A +++K+A E+ + I + P LARSL+K+V I+  IP + + AVA+++  +Y
Sbjct: 286 VVAKGVDNMAIQIKKVARENGVHIVQNPPLARSLYKEVDIDHPIPDMLFAAVAEVLAYVY 345


>gi|312879606|ref|ZP_07739406.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM
           12260]
 gi|310782897|gb|EFQ23295.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM
           12260]
          Length = 390

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 156/279 (55%), Gaps = 15/279 (5%)

Query: 78  SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137
           S  VF L+ L L     +  G L  M++ +G        VL    + P + R++  EG+K
Sbjct: 117 SSRVFFLSWLPLGLCCTL--GALGLMVYQVGF-------VLTPKPLIPKWNRLNPVEGMK 167

Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS---ANPHSILYHAFFTVRK 194
           R+ SI +LV  +K  +K +L+  I+  +L ++   ++  +          +    +++  
Sbjct: 168 RLISIRSLVELVKGILKALLLLLILYSALRKDLAALISTMRYPFTQGMGAVVDKIWSLSF 227

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
            + M+L  +     L   W + +    ++MSKQEIK+E KQ  G+P++K R +   R   
Sbjct: 228 KMAMMLFVLGLFDYLYQRWEFER---SIRMSKQEIKEEYKQMEGDPLVKRRIRQRQRELA 284

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           + +MM    +A ++ITNPTH ALAL+Y +   +AP+L+AKG+  IA+K+R++A EH IPI
Sbjct: 285 QRRMMAEVPKADVVITNPTHLALALQYDREIMEAPLLLAKGEGYIARKIREVAEEHKIPI 344

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + P LA++L+++V +   +P  FY+AVA+++  +Y  K
Sbjct: 345 VQNPPLAQALYREVEVGGEVPEAFYRAVAEVLAFVYRLK 383


>gi|166714026|ref|ZP_02245233.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|111146902|gb|AAX40642.2| HrcU [Xanthomonas oryzae pv. oryzicola]
          Length = 357

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 13/341 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y V  D    L 
Sbjct: 3   EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFV--DHMRALT 57

Query: 68  SATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                 LE   D + I   L H+ +    L++P L   ++ G+     Q     +L  V 
Sbjct: 58  RIGFDFLENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVS 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F  ++   G+K+++S+ +L+N +K  +K +L+G ++ + +      ++      P  I
Sbjct: 118 PKFDSLNPANGVKKLFSLRSLINLLKLVIKAVLIGVVLWVGIRALMPMIIGLAYETPLDI 177

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPII 242
              A+ T+  +  + +L    +   D  WS   W      +MSK E K E K+S G+P I
Sbjct: 178 AQIAWRTLSILFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEI 235

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K  A+  +     E   +A +++ NPTHYA+AL Y   +   P +VAKG +  A +
Sbjct: 236 KGKRKEFAKELVFGDPRERVVKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALE 295

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +R  A+   IPI   P LAR+L+ QV +  AIP   ++ VA
Sbjct: 296 LRAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVA 335


>gi|260767693|ref|ZP_05876628.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|260617202|gb|EEX42386.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|315179475|gb|ADT86389.1| flagellar biosynthesis protein FlhB [Vibrio furnissii NCTC 11218]
          Length = 339

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 134/233 (57%), Gaps = 8/233 (3%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180
           P F +++   G+KR++ + + V  +KS +K++LV  +    I  S  + +   LD    N
Sbjct: 86  PKFSKMNPLSGLKRMFGLQSWVELLKSILKVLLVAGVAFYLIEASKQDLFQLSLDTFPQN 145

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +D+ +   Q  ++LKM+KQE+KDE K + G P
Sbjct: 146 ----IFHALDILLNFVLLISCSLLVVVAIDVPFQIWQHANQLKMTKQEVKDEYKDTEGKP 201

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + APV+VAKG + +A
Sbjct: 202 EVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVALRYKQNTDRAPVVVAKGIDHLA 261

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 262 LKIREVAREHDIMIIPAPPLARALYHTTELEQEIPDGLFVAVAQVLAYVFQLK 314


>gi|323491458|ref|ZP_08096642.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546]
 gi|323314327|gb|EGA67407.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546]
          Length = 376

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 190/357 (53%), Gaps = 10/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++ +
Sbjct: 1   MAESDG-QERTEDATPRRLQQAREKGQVARSKELASVSVLVIGSVALMWFGEGLARALFT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L + + +   + +      L  LS     L++  + LF+   IG+  +  I   ++
Sbjct: 60  AMGRLFSLSREEIFDQVKLFDIALGSLSSLLLPLLLILVTLFIAALIGAAGVGGIS-FSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM-LDF 176
               P + +++   G+KR+  + + V  +KS +K+ LV  +   +  +  E+ F + +D 
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              N    ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++
Sbjct: 179 YPQN----IFHALDILLNFILLISCTLLLVVAIDIPFQIWQHANQLKMTKQEVKDEYKET 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++VAKG 
Sbjct: 235 EGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDSDRAPIVVAKGT 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 295 DHMALKIREIAREHDIYVVPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351


>gi|307637461|gb|ADN79911.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
 gi|325996051|gb|ADZ51456.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
 gi|325997646|gb|ADZ49854.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
          Length = 358

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 183/353 (51%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSVFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L+     L++P L++ M+    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+             L     L  +D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|51597656|ref|YP_071847.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           32953]
 gi|170022952|ref|YP_001719457.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186896790|ref|YP_001873902.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590938|emb|CAH22594.1| Putative flagellar assembly/export protein, flhB [Yersinia
           pseudotuberculosis IP 32953]
 gi|169749486|gb|ACA67004.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186699816|gb|ACC90445.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
          Length = 377

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 174/340 (51%), Gaps = 17/340 (5%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P++ K+  A  +G+ P S++ ++ + ++   I LL  F P   ++ S   V +A    + 
Sbjct: 12  PTAGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKALVSQSFVSVAQLASQL 70

Query: 74  LEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGI---GSYLIQRIPVLNLNHVK--PS 126
            +  +   FLL +L + A  L  +IP + LF M      G +        N   VK  P 
Sbjct: 71  DDQGALEQFLLANLFIFAKFLATLIP-IPLFSMLATLIPGGW--------NFTPVKLIPD 121

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K++S   GIKRI+S +N    +K   K  +V   + + +  +   +L   +      + 
Sbjct: 122 LKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEEAIT 181

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             F     +L+  +  +     +DI  S+H +  K+KM+KQE+K E K + GNP IK+R 
Sbjct: 182 QGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPEIKSRV 241

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + R     ++ +    A +IITNPTH+++AL+Y   +  AP +VAKG++ IA  +R I
Sbjct: 242 RQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIALYIRSI 301

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A +H I I E P LAR+++    +N  IP   Y+A+AQ++
Sbjct: 302 AQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVL 341


>gi|227873532|ref|ZP_03991777.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268]
 gi|227840622|gb|EEJ51007.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268]
          Length = 361

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 180/368 (48%), Gaps = 44/368 (11%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTEAPS KK  DA  EGN   SR+  +  ++L  + Y + F  P IY    DL   
Sbjct: 2   ADGDKTEAPSEKKRSDARKEGNVFQSRDI-VTVAVLFGVFYAVRFMMPFIYK---DLRNF 57

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRL-----------VIPGLLLFMMFGIGSYLIQR 114
           L           S+I+ LL   S  +++L            +P LL+ +  G+ + L+Q 
Sbjct: 58  L-----------SYILELLDEPSPISNKLYLRFTWLFVKSAMPLLLVTVFLGVIASLVQT 106

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI---------ILVGTIITIS 165
              ++   + P F +++  +G+ RI+S  N+V  +K+ +KI         I+   II I+
Sbjct: 107 RFNISFKLLTPKFSKLNPMQGLGRIFSKKNVVELLKNILKIIILINFLYSIIKADIIPIA 166

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
                  M+     N    L    F +   +  + L IA    +   W Y    + LKM+
Sbjct: 167 ------KMVHMDIQNSSLALVSMMFDLITRVCGVFLIIALFDFMYQKWEYE---NNLKMT 217

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+KDE K   GNP IK R K   R+R   +MM+    A +II NP H A+A++Y   +
Sbjct: 218 KQEVKDEYKMLEGNPEIKGRMKQQMRARANQRMMQQVPDADVIIRNPEHLAIAIKYDPDK 277

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           N APV++AKGQ+ +A ++  +   + +   E   LAR+++    +   IP  FY AVA++
Sbjct: 278 NTAPVVLAKGQDELALRIVAVGEANGVTAIENKPLARAMYPLCHVGKEIPGDFYGAVAEI 337

Query: 346 IYKIYHKK 353
           +  IY K+
Sbjct: 338 LVYIYQKE 345


>gi|289548904|ref|YP_003473892.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484]
 gi|289182521|gb|ADC89765.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484]
          Length = 349

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 187/344 (54%), Gaps = 16/344 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSPGIYSVTSDLHVLL 66
           +++TE  +  +      EG+  +++   L +S+   +I + L+   P +Y   S L +  
Sbjct: 4   ESRTERATPYRRRKLREEGH--VAKSTDLVASLSLLVITVSLYLVGPQLYY--SLLSIFY 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            + T    E  + + F +  +S     L++   L  ++  +G + +    V  L  ++  
Sbjct: 60  TAPTLSVTEHPTLLRFFVEKVSPYILSLMVLSTLTVILAHLGQFGV----VFTLKPLRFR 115

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGTIITISLTENYFTMLDFISANPHSIL 185
           ++R++  EGIKR+ S+  L    K+ +KI IL+ T+     TE Y  M   +     SIL
Sbjct: 116 WERLNPVEGIKRLLSLTTLFELFKNTLKIGILLFTVYLFLRTEIYRLMESVLLPLHISIL 175

Query: 186 YHAFFTVRKVLIM--ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                T++  +I+  + + +A+L +L   W Y +   K++M+KQE+K+E KQ  GNP++K
Sbjct: 176 DVMGLTLKLFIILGTLAIIMASLDLLYRRWDYER---KIRMTKQEVKEEYKQHEGNPMVK 232

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLIAKK 302
              +   R   + +M++   +AT++ITNPTH A+ALRY  +  D APV++AKG   IA++
Sbjct: 233 GAIRKRMRQLAKGRMIKEVPKATVVITNPTHVAVALRYDPSGGDRAPVVLAKGVGQIAER 292

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  +A E+ +PI  +  LARSL++   +   IPP FY+AVA++I
Sbjct: 293 IINVAREYGVPIVRKEELARSLYRWAEVGEEIPPRFYRAVAEII 336


>gi|253988526|ref|YP_003039882.1| type III secretion component protein sctu [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637892|emb|CAR66521.1| type iii secretion component protein sctu [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779976|emb|CAQ83137.1| type iii secretion component protein sctu [Photorhabdus
           asymbiotica]
          Length = 350

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 181/339 (53%), Gaps = 5/339 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S E    S IL  L+ ++   S       S L ++ A+
Sbjct: 4   EKTEKPTPKKLRDARKKGQVTKSTEIVSTSLILG-LVGMIMVMSDYYLEHLSKLMLIPAN 62

Query: 69  ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             ++   + ++H+V    +L      L +P L + ++  + S+  Q   +L+ + +KP  
Sbjct: 63  LLEKPFPQALNHVV---ENLMQELVYLCLPILSVSVLLSLASHFAQYGFLLSGHSIKPDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+++  EG KRI+SI +LV F+KS +K+ L+ T+I ++L  N   +L+        I+  
Sbjct: 120 KKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLIWVTLEGNLQGLLNLPECGSRCIIPV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + +++ +  +    +++ D  + ++Q   +L+MSK EIK E K+S G+P IK++++
Sbjct: 180 LGMMLTQLMTVCGIGFIIISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +      M  +   +++I+ NPTH A+ +RY + E   P++  K  +  A ++R+IA
Sbjct: 240 QFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRIA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            E  IP+ +   LAR+L++   I+  IP    +A A+++
Sbjct: 300 EEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVL 338


>gi|94986973|ref|YP_594906.1| flagellar biosynthesis protein FlhB [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731222|emb|CAJ54585.1| Flagellar biosynthesis pathway, component FlhB [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 357

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 192/356 (53%), Gaps = 13/356 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D P +KTE  + K+ ++A +EG+ P S E +   +  A ++ L       IYS     H
Sbjct: 2   SDDP-SKTEKATPKRRQEARSEGSVPKSEEVTKALTTAAGMLGL------AIYSGVMGRH 54

Query: 64  ---VLLASATQR-KLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
              +     T+  + E  +  V+ L  +++   + L++P LL   +    S  +Q   + 
Sbjct: 55  FETIFYYIFTESFRFEVTAQSVYALFIYVAQEIAILLMPILLFIAVTAWISLRVQVGALW 114

Query: 119 NLNHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                K  + + ++ +G+K ++ S   LV  ++S V++I++G +  + +   +   L   
Sbjct: 115 TTKVFKFKWSKFNIIKGLKGMFASQQTLVRLLRSLVQVIVIGIVPYMIIKGEFSNFLPLY 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            A+P  +  +   T   +++  L+ +  + V D+ ++ + +   LKM+KQEIKDE KQ  
Sbjct: 175 YASPSGVADYMLNTGIVLVLYTLIPMTIIAVADLVYNRYSYEENLKMTKQEIKDESKQQE 234

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+PI+K +Q+      + ++MM+   +A +++TNP H A+ALRY   E  AP+++A G +
Sbjct: 235 GDPIVKQKQRQKMMQMMTNRMMQDVPKADVVVTNPKHIAVALRYNALEAPAPLVLAIGVD 294

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A+K+++IA E+NIPI E   LAR+L+K V +   IP   YKAVA ++  ++  K
Sbjct: 295 RVAEKIKEIARENNIPIRENVPLARALYKAVGVGEMIPEELYKAVAAILASVWRLK 350


>gi|153832518|ref|ZP_01985185.1| VscU [Vibrio harveyi HY01]
 gi|156974012|ref|YP_001444919.1| Type III secretory pathway, component EscU [Vibrio harveyi ATCC
           BAA-1116]
 gi|41834187|gb|AAS13325.1| VscU [Vibrio harveyi]
 gi|148871313|gb|EDL70185.1| VscU [Vibrio harveyi HY01]
 gi|156525606|gb|ABU70692.1| hypothetical protein VIBHAR_01723 [Vibrio harveyi ATCC BAA-1116]
          Length = 349

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 178/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTELPTPKKLRDARQKGQVAKSQEV-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   ++ +   ++     L+ P L++  +  I S + Q   + +   VKP  K
Sbjct: 63  LAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T+L   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPTIT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V++++I+  +    +   D  +       +LKM+K E+K E K+  G+P IK++++ 
Sbjct: 181 GVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +AK+M  IA+
Sbjct: 241 LHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAIAH 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  IP+ ++  LAR+L+    +N  IP    +A A+++
Sbjct: 301 EEGIPVMQKVPLARALYADGQLNQYIPGDLIEATAEIL 338


>gi|145597135|ref|YP_001154599.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|145212903|gb|ABP42309.1| type III secretion protein [Yersinia pestis Pestoides F]
          Length = 354

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 179/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI DA  +G    S E  + ++++  L  +L   S   +   S L  +L  
Sbjct: 4   EKTEQPTPKKIRDARKKGQVAKSNEV-VSTALIVALSAMLMGLSDYYFEHFSKL--MLIP 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP  K
Sbjct: 61  AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I    
Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK++++ 
Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKIA 
Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +PI +   LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 338


>gi|90021814|ref|YP_527641.1| flagellar biosynthesis protein FlhB [Saccharophagus degradans 2-40]
 gi|89951414|gb|ABD81429.1| flagellar biosynthetic protein FlhB [Saccharophagus degradans 2-40]
          Length = 376

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 178/354 (50%), Gaps = 7/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P++K+ E A  +G  P S+E +  S++L      L+ F   I    +
Sbjct: 1   MAEEDSAQEKTEEPTAKRQEKAREDGQIPRSKELTT-SAVLIVGCVGLYMFGGQIAQGLA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLS---ASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           D+     +  +  + D +    +L HL  S     +++IP   + ++  I   +     +
Sbjct: 60  DILKFNFTIEREAIFDPNA---MLGHLGSSFYLGLKVLIPLFAVLLVAAIAGPIALGGWL 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P   R+    G+KR++S+ +LV  +K+  K+ +V     + L      +L   
Sbjct: 117 FSTKSLAPKLNRMDPVAGLKRMFSVKSLVELVKAIGKVGVVVAFAFVLLNYMKEDLLGLG 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                  + H+ +      I+I +    +  +DI +       KL+M++QEIKDE+K S 
Sbjct: 177 FEGVERGMAHSVYLSIIAAIIISVSTLVIAAVDIPFQIWDNVKKLRMTRQEIKDEMKDSE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P +K R + +     +++MM A   A ++ITNPTHY++AL+Y     + P+L+AKG +
Sbjct: 237 GKPEVKGRIRQLQYEMAQNRMMAAVPEADVVITNPTHYSVALKYDPNSMETPILLAKGVD 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A K+R+IA  + I   + P LAR+++    ++  IP   Y AVAQ++  ++ 
Sbjct: 297 HMAMKIREIAKANKIEFIQSPLLARAIYHTTEVDEEIPSGLYVAVAQVLAYVFQ 350


>gi|188494712|ref|ZP_03001982.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
 gi|188489911|gb|EDU65014.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
          Length = 379

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 183/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     E I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +   L  + A P  +  +     + +V +  +++ +F A   +LD+  +   +   LKM+
Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+ 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|218887500|ref|YP_002436821.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758454|gb|ACL09353.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 346

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 170/343 (49%), Gaps = 13/343 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P+ K++ +A  +G+   S++     ++LA   YL             D+   + +
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDVGSALTVLAVGAYLAIK--------GGDIFAEIMA 54

Query: 69  ATQRKLEDIS-----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            T+  +  +S      +  L T ++  A  +V+P + L M  G+ + L Q   +  L   
Sbjct: 55  VTELSMRQMSLPFDQALPLLATAVTRGAIGIVLPVVGLAMCVGLLANLAQTGVLFALKAA 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P  + +S  +  K+++S+ N V  +K+ +K+ ++G  +   L+++   +          
Sbjct: 115 MPKLENMSPGKWFKKVFSVRNAVEMLKNCIKVAVLGWAVWKVLSDHMRGLFAIPDGGIGG 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +L     T R +++        +  LD  +   Q+  +  M+K E+K E K+  G+P IK
Sbjct: 175 LLTVLGITARDMVLTSAAVFCVIAALDYMYQRWQYNKQHMMTKDEVKREYKEMEGDPHIK 234

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K + +  I    +    +A +I+TNPTHYA+AL Y +     PV++AKG+ L+AK+M
Sbjct: 235 GKRKQLHQEMITQNTLSNVRKAKVIVTNPTHYAVALDYEKDRTPLPVILAKGEGLLAKRM 294

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +IA E  IP+ +   LARSLF +   N+ IP      VA+++
Sbjct: 295 VEIAREEGIPVMQNVPLARSLFAEGTENAYIPKDLIGPVAEVL 337


>gi|147678408|ref|YP_001212623.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum
           thermopropionicum SI]
 gi|146274505|dbj|BAF60254.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum
           thermopropionicum SI]
          Length = 357

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 186/354 (52%), Gaps = 17/354 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLHVLL 66
             +TE  + ++I++A  +G   ++R   L  ++ LA ++ LL       Y+V  +  + L
Sbjct: 6   QERTEQATPRRIQEARRKGQ--VARSTDLTGALCLAAMVALL-------YAVKDEFFLDL 56

Query: 67  ASATQRKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
                     ++  +        +L    L +++L+ P + + ++  + S L+Q   + +
Sbjct: 57  QRYLGWYFSQVAGFIASEEVPGAVLYDTVLFSAKLMAPFIAVPVVTAVVSNLVQVGFLFS 116

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P    ++   G++RI+S  +LV  +KS  K  ++G I    +  N   +L   + 
Sbjct: 117 TEALNPKLSVLNPATGLQRIFSSRSLVELVKSVFKFTVIGIITYYLIKANLADLLLVFNR 176

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  I       + KV     +    L++LD  +  +++   L MS+QE+K+E +Q+ G+
Sbjct: 177 PPGGIYREVAGFILKVAGWAAVAYLILSLLDYIYQRYEYKKSLMMSRQELKEEFRQTEGD 236

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK+RQ+ + R+   ++++    +AT+++TNPT  A+ALRY Q +  AP +VAKG   I
Sbjct: 237 PLIKSRQREMRRAISLNRIISEVPKATVVVTNPTSLAVALRYEQGQMPAPKVVAKGAGRI 296

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++++IA EH++PI E   +AR ++  V ++  IP   Y+AVA+++  +Y  K
Sbjct: 297 AGRIKEIAREHDVPIVENKEIARFIYYNVELDQVIPFEIYQAVAEILALVYRLK 350


>gi|34496481|ref|NP_900696.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
           12472]
 gi|34102335|gb|AAQ58701.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
           12472]
          Length = 388

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 173/361 (47%), Gaps = 28/361 (7%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TE  S+K++  A  +GN P S+E S F+  +   + LL      +     ++ 
Sbjct: 3   EDSDLERTEPASAKRLSMAREDGNIPRSKELSTFAVTMTG-VALLMAMGGQLGHALGEIM 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118
             L +  Q  +++    +         A   + P       FG  +      P+L     
Sbjct: 62  RHLFTFDQATVQNTEPALIRFKESLFQALGALAP------FFGGLALAALLAPMLVGGWN 115

Query: 119 -NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                ++P+F +++   GIKR++S+N     +K+ +K +L+G I T  +      ++  +
Sbjct: 116 MTFKALEPNFGKLNPLPGIKRLFSLNAATEGLKAILKSLLIGGIATWYIWRERGEIIGLL 175

Query: 178 SANPHS-------ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +    +       ++   FF V   LI+       L  LD+ +    +Y KL+M+K+E+K
Sbjct: 176 AMPLEAGILKMTDLMIRTFFIVTSALIL-------LVALDVPYQLWSYYKKLRMTKEEVK 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K++ G+P +K R + + R   R +MM+   +A +I+TNPTH+A+AL+Y  T   AP 
Sbjct: 229 QEYKEAEGSPEVKGRIRQMQREAARKRMMQEVPKANVIVTNPTHFAVALKYDDTMR-APQ 287

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG  ++A+K+     E  +PI   P  AR+L+    +   IP   Y A AQ++  ++
Sbjct: 288 VVAKGSLILAEKIIDTGKESRVPIMRSPRFARALYFHAELGQDIPAQLYAAAAQVLAYVF 347

Query: 351 H 351
            
Sbjct: 348 Q 348


>gi|162147444|ref|YP_001601905.1| flagellar biosynthetic protein flhB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545554|ref|YP_002277783.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786021|emb|CAP55603.1| putative flagellar biosynthetic protein flhB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533231|gb|ACI53168.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 358

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 173/361 (47%), Gaps = 32/361 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      K++ P+ K++E A  EGN   SRE  +    LA L   L  F+      T+
Sbjct: 1   MAEGSGGGEKSQDPTGKRLETAREEGNVAQSRELLM----LAILGGFLLVFT----MATA 52

Query: 61  DLHVLLASATQRKLE-------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
           D      +     +E       D++ I  +    +L    L  P +    +  I   ++Q
Sbjct: 53  DSARRFVAHVGGTMEHFDSIPTDMTSIYRIAVQTALEGVLLAAPLVFTGFVVTIACGMLQ 112

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--------TIS 165
              +     + P   R+S   G++R++ + N+V  +KS  K ++ G ++         ++
Sbjct: 113 TGFLYRPQAILPDITRLSPMRGLQRMFGMTNVVEMLKSLTKFVVFGVVLYAVAKGTLHVA 172

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
                ++ML  +S       Y     +    +        + +LD  W+ +     L+MS
Sbjct: 173 PEAERWSMLRLVSELSSWFAYAVLVVLLVQCV--------IAILDDLWTRYHRIVGLRMS 224

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
            Q+IKDE +Q+ G+P +K R K + R R R +M++A   AT++ITNPTHYA+AL Y    
Sbjct: 225 FQDIKDEFRQTEGDPKVKGRLKQMRRRRARRRMLQAVKTATVVITNPTHYAVALSYESGA 284

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + AP +VA G + +A ++R  A +  +P+   P LAR+L   +P++S IP  +++ VA +
Sbjct: 285 DSAPKIVASGTDELAARIRHAAEDAKVPVVANPPLARAL-HALPLDSEIPSEYFQPVAAI 343

Query: 346 I 346
           I
Sbjct: 344 I 344


>gi|294140216|ref|YP_003556194.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12]
 gi|293326685|dbj|BAJ01416.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12]
          Length = 377

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 176/357 (49%), Gaps = 13/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + +++E A  +G    S+E    S++L           P I     
Sbjct: 1   MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGT-SAVLVSAAVGFAMVGPSIAGSLV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----LLLFMMFGIGSYLIQRIP 116
            +   L +  + ++ D + +V +    S+    L  P     LL+ ++  IG+ ++  I 
Sbjct: 60  TIMTTLFTMDREQVFDTNQMVLIW---SMIGRELAFPMASLMLLIALVAFIGNIVLGGI- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +     P   +++   G KR++ +  LV   K   K ++V       L+  +  +L  
Sbjct: 116 TFSTKAFMPKTDKMNPMAGFKRMFGVQALVELTKGIAKFLVVALSAYFLLSFFFDEILAL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIK 234
              +    +YHA   +  V + ILL  +T+ ++ I   +  W    +LKM+KQE+KDE K
Sbjct: 176 SRDHLPGNVYHALDLL--VWMFILLCSSTILIVVIDVPFQVWNHNKQLKMTKQEVKDEYK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G P +K + + + R   + +MM     A +I+ NP HYA+A++Y   ++ AP ++AK
Sbjct: 234 DTEGKPEVKGKIRQMQREIAQKRMMSEVPNADVIVVNPEHYAVAVKYDAMKSTAPYVLAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G + +A K+R+IA EH I I   P LAR+++    I+  IP   + AVAQ++  ++ 
Sbjct: 294 GVDEVAFKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQ 350


>gi|30524900|gb|AAP34345.1|AF499777_13 HrcU [Xanthomonas axonopodis pv. glycines]
          Length = 357

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 168/340 (49%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +    S G Y  +  +  L+ 
Sbjct: 3   EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMK---SAGDY-FSDHMRALMT 58

Query: 68  SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                     D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P
Sbjct: 59  IGFDFPENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I 
Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E+K+S G+P IK
Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  A+P   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335


>gi|5679184|gb|AAD46898.1|AF160974_1 HrcU homolog [Xanthomonas campestris pv. glycines]
          Length = 357

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 168/340 (49%), Gaps = 11/340 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +    S G Y  +  +  L+ 
Sbjct: 3   EEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMK---SAGDY-FSDHMRALMT 58

Query: 68  SATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                     D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P
Sbjct: 59  IGFDFPENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I 
Sbjct: 119 KFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIA 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E+K+S G+P IK
Sbjct: 179 QIAWRTLGMLFALGVLLFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREVKESEGDPEIK 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            ++K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++
Sbjct: 237 GKRKEFAKDMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALEL 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           R  A+   IPI   P LAR+L+ QV +  A+P   ++ VA
Sbjct: 297 RAFAHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVA 335


>gi|255026794|ref|ZP_05298780.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-003]
          Length = 324

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 145/255 (56%)

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
            ++++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V  +K+
Sbjct: 59  GKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKA 118

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            + I L+  +  I   ++  T++ +   N    L   F   +   + + L IA + +LD 
Sbjct: 119 LLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDF 178

Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ N
Sbjct: 179 FYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNN 238

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH ++ +RY +T++ AP L+ KG++ +A  +R++A    +P+     LARS++     +
Sbjct: 239 PTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPD 298

Query: 332 SAIPPVFYKAVAQLI 346
             I    YK V +++
Sbjct: 299 EYIQEDLYKDVIEVM 313


>gi|56964016|ref|YP_175747.1| flagellar biosynthesis protein FlhB [Bacillus clausii KSM-K16]
 gi|56910259|dbj|BAD64786.1| flagellar biosynthetic protein FlhB [Bacillus clausii KSM-K16]
          Length = 362

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 182/352 (51%), Gaps = 12/352 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + KK +D   +G  P S++ +    + A  + L  F  P +++    L  ++A
Sbjct: 13  EEKTEKATPKKRQDTRKKGQVPKSQDVNTAFMLFAAFLLLSLFAGPRLFAA---LKEMMA 69

Query: 68  SATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              QR L       +I  L   L++      +P + L ++ G  +  +Q   +     +K
Sbjct: 70  DVFQRFLSLPLTAENIAALFNELTIEMGMAALPIMALTVLAGAFASFVQVGSLFTPEPMK 129

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
              +++   +G KRI+S   LV   KS +KI+ +G  +   +   Y  + D +  +  S+
Sbjct: 130 LKLEKLDPIKGAKRIFSTRALVELGKSMLKIVFIGAAVAFVI---YANIGDVLLLSQKSV 186

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSYGNPI 241
              A       + M L     L VL I    +Q Y    +++MSK++I+DE K   G+P 
Sbjct: 187 EVGAASIGHLTVTMGLFAAVLLMVLAIPDYLYQRYDHEKQIRMSKKDIRDEHKTMEGDPK 246

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           I+ R+K        +++M+   +A ++ITNPTHYA+ALRY Q + DAP++VAKG + +A+
Sbjct: 247 IRARRKQRQLEMSMNRIMQEVPKADVVITNPTHYAVALRYDQEQADAPIVVAKGVDYMAE 306

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++ +A +H+IP+ E  +LAR+++  V +   I    ++AVA+++  +Y  K
Sbjct: 307 RIKTVAKKHDIPLVENVALARAMYASVELMQPIHEDMFQAVAEVLAYVYRLK 358


>gi|293408345|ref|ZP_06652184.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471523|gb|EFF14006.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 379

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 182/360 (50%), Gaps = 23/360 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIVFLLTHLSLSA----SRLVIPGLLLFMMFGIGSYLIQRIPV 117
           + +    Q     E I    FL  HL +      + L +P   LF     G +L   +P 
Sbjct: 62  ISVHQYAQEINNPEVIGQ--FLRHHLLILGKFILTLLPMPAAALFSSLVPGGWLF--LP- 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N+   L  +
Sbjct: 117 ---KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLG-L 172

Query: 178 SANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
            A P  +  +     + +V +  +++ +F A   +LD+  +   +   LKM+KQE+K+E 
Sbjct: 173 QALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMTKQELKEEY 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VA
Sbjct: 230 KNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVA 289

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 290 KGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|114562373|ref|YP_749886.1| flagellar biosynthesis protein FlhB [Shewanella frigidimarina NCIMB
           400]
 gi|114333666|gb|ABI71048.1| flagellar biosynthetic protein FlhB [Shewanella frigidimarina NCIMB
           400]
          Length = 377

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 9/355 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D+   +TE P+SK++E +  +G    S+E    + +LA  +       P I     
Sbjct: 1   MAESDSGQERTEDPTSKRLEQSREKGQVARSKELGTAAVLLAASVGFSMT-GPAIAKSLY 59

Query: 61  DLHVLLASATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           ++   + S  + ++ D + +  V+ +    L+   +    LL F+ F +G+ ++  +   
Sbjct: 60  NIMKQIFSMERDQIFDTNSMFRVWGVVGSELAGPLISFIALLAFVSF-LGNIVLGGMS-F 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           ++    P   +++   G KR++    LV   K   K  +V       L   ++ +L   S
Sbjct: 118 SVKAFMPKGSKLNPMNGFKRMFGTQALVELTKGIAKFSVVALSAYFLLKFYFYDILTLSS 177

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK--LKMSKQEIKDEIKQS 236
            +    +YHA   +  + + ILL  + L ++ I   +  W  K  LKM+KQE+KDE K +
Sbjct: 178 DHLPGNVYHALDLL--IWMFILLCSSMLLIVIIDVPFQIWNHKKQLKMTKQEVKDEYKDT 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K R + + +   + +MM     A +I+ NP HYA+A++Y  + + AP L+AKG 
Sbjct: 236 EGKPEVKGRIRQMQQEMAQRRMMTEVPNADVIVVNPEHYAVAVKYDVSRSSAPFLIAKGV 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A ++R+IA EHN+ I   P LAR+++    ++  +P   + AVAQ++  ++ 
Sbjct: 296 DDVAFRIREIAREHNVAIVSAPPLARAIYHTTKVDQQVPEGLFTAVAQVLAYVFQ 350


>gi|258624670|ref|ZP_05719605.1| flagellar biosynthetic protein [Vibrio mimicus VM603]
 gi|258583062|gb|EEW07876.1| flagellar biosynthetic protein [Vibrio mimicus VM603]
          Length = 375

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 185/357 (51%), Gaps = 24/357 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E+ + D KTE  S++KI+ A   G  P  +E   F++    L  +L F++    I+  
Sbjct: 1   MNEHSSQD-KTEQASAQKIKKARQGGQVPRVKE---FTTAAIFLAVVLLFYAQLDHIWQS 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +     S T++ L +   +V  L         +++P   + ++  +GS ++    + 
Sbjct: 57  MAGIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              ++ P   +++   GIKR++S  +LV  +KS +K++++  ++   L +N+   L  + 
Sbjct: 117 RPANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYL-DNHLQPLLGMQ 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATL---------TVLDIGWSYHQWYSKLKMSKQEI 229
             P             +LIM +LF   L          V+DI +   ++  +L+MSKQE+
Sbjct: 176 RLP--------LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQEL 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E KQ+ G P IK+R + I +   R K+ +    A +++TNPTHYA+AL+Y  + +DAP
Sbjct: 228 KEEFKQNEGRPEIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 288 FVVAKGVDETAIHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHIL 344


>gi|119469999|ref|ZP_01612804.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7]
 gi|119446709|gb|EAW27982.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7]
          Length = 376

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 187/359 (52%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E D+   KTE P+ KKIE++  +G    S+E  ++F  I + +  L++   P I    
Sbjct: 1   MAE-DSGQEKTEEPTGKKIEESKKKGQVARSKELGTMFVLIFSAISLLMY--GPEIGKGL 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFM-MFG--IGSYLIQRI 115
            ++   + S  + +  D + +  + + +   A  L+ P  + +F+ +F   IG+ L+   
Sbjct: 58  YNIMGRMLSLNRNETYDTTKMFAVWSSV---ADALIFPMAMFVFIILFAGIIGNTLLGGF 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +     P   ++S  +G KR++     V   K+ +K ++V +     +   +  +L 
Sbjct: 115 N-FSWQAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFLVVASFAFFLINTFFDEILH 173

Query: 176 F-ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             I + P++I+ HA   +  + + +   +  +  +D  +  H  + +LKM+ QE+KDE K
Sbjct: 174 LSIESAPNNII-HALEILSWMFLALSCTLVIIAAIDAPYQSHTHHKQLKMTLQEVKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            S G+P IK R +   R   + +MM+    A +++TNPTHY++AL+Y      AP+++AK
Sbjct: 233 NSEGDPQIKARIRQTQRQMSQKRMMQDVPDADVVVTNPTHYSVALKYDTERAGAPIVLAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A ++RK+A  +++PI E P L R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 293 GVDELAMQIRKVAGGNDVPIVESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351


>gi|291276831|ref|YP_003516603.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
 gi|290964025|emb|CBG39864.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
          Length = 364

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 174/355 (49%), Gaps = 41/355 (11%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP-------GIYSVTS 60
             K EAPS++KI+ A  EGN   S E   F S +   I+ +F   P       GIY    
Sbjct: 5   QEKQEAPSARKIQKAREEGNVAKSPELVAFVSFVIG-IFAVFGIFPFWLQNIKGIYITCL 63

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +  S        + +   L   L      +++P L   +  G+   +IQ   +L  
Sbjct: 64  QFFSMEFS--------LGNFFDLFLKLLWQTLLIILPVLGALLFAGVFGNIIQVGFLLAP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFM----KSFVKIILVGTIITISLTENYFTMLDF 176
             ++P   +++   G+K ++S   L+  +    K FV  +L G I           ++ F
Sbjct: 116 KVLQPKLGKLNPIAGLKNLFSFKKLLEGLLITLKVFVAFLLGGAI-----------LIHF 164

Query: 177 ISANPH----SILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +   P+    ++   A +   K LI+I   L+    + ++D      Q+   L+MSKQE+
Sbjct: 165 LRQIPNVAMLNVFSQAIWVRDKALILIASLLVLFFVMAIIDFLIKKFQYTKSLRMSKQEL 224

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-A 288
           KDE KQ  GNP +K + + I       KMM+A   A +++TNPTHYA+ALR+    ND A
Sbjct: 225 KDEYKQQEGNPEVKAKIRQIMMKNTMGKMMQAIPNADVVVTNPTHYAIALRF--APNDPA 282

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           P++VAKG + +A +++ IA E+ I I E P LAR+L+KQV +   IP   ++AVA
Sbjct: 283 PIVVAKGIDHLAIRIKGIARENEIEIVENPKLARALYKQVDLEEPIPRELFEAVA 337


>gi|258611828|ref|ZP_05711674.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           R2-503]
 gi|258606467|gb|EEW19075.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           R2-503]
          Length = 300

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 145/255 (56%)

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
            ++++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V  +K+
Sbjct: 35  GKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKA 94

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            + I L+  +  I   ++  T++ +   N    L   F   +   + + L IA + +LD 
Sbjct: 95  LLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDF 154

Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ N
Sbjct: 155 FYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNN 214

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH ++ +RY +T++ AP L+ KG++ +A  +R++A    +P+     LARS++     +
Sbjct: 215 PTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDEVPMITNRQLARSIYYTTNPD 274

Query: 332 SAIPPVFYKAVAQLI 346
             I    YK V +++
Sbjct: 275 EYIQEDLYKDVIEVM 289


>gi|152975183|ref|YP_001374700.1| flagellar biosynthesis protein FlhB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023935|gb|ABS21705.1| type III secretion exporter [Bacillus cytotoxicus NVH 391-98]
          Length = 348

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 187/353 (52%), Gaps = 12/353 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S   +P  +L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIG--KNADTTEYFYLMGILLLKVS---VPVFILVYAFHLFNYMIQVGFLFSSKIIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   ++L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDIVKSLFYMVLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIISQIKLIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ALRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVALRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI-YKIYHKKI 354
           MR +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++ Y I  K+I
Sbjct: 294 MRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTKQI 346


>gi|328468938|gb|EGF39898.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus 10329]
          Length = 351

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTEQPTAKKLRDARKKGQVAKSQEI-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   ++ +   ++   + L+ P +L+  +  I S + Q   + +   +KP  K
Sbjct: 63  LAYQGFQD--ALIDVAIAIAKEMAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T++   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPAVT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  IA 
Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAIAR 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +P+ ++  LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVL 338


>gi|71281473|ref|YP_268257.1| flagellar biosynthesis protein FlhB [Colwellia psychrerythraea 34H]
 gi|71147213|gb|AAZ27686.1| flagellar biosynthetic protein FlhB [Colwellia psychrerythraea 34H]
          Length = 376

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 189/363 (52%), Gaps = 18/363 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSV 58
           M+++D+ + KTE P++KK+ DA  +G    S++   F  ++  AC + L+      + + 
Sbjct: 1   MADSDSGE-KTEEPTAKKLTDARKKGQIARSKDLGTFFVLVGSACAMLLM---GKALANS 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----IGSYLIQR 114
            +++   + S ++ +  D++    L   ++    +++ P L +F +      IG+ L+  
Sbjct: 57  MANMMSHMFSLSREEAMDVNA---LFKVINDGVYQIIPPLLWIFFIVMLAAFIGNTLLGG 113

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +   + + + P   ++S   G KR++ +   V  +KS +K  +V  +  + L+  +  +L
Sbjct: 114 MS-FSGDAMMPKASKLSPMAGFKRMFGVQAAVELIKSVLKFFVVFIVAFLLLSGLFEEIL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   +   HA   ++ + +++ L I  + V+D  +       +LKM+KQEIKDE K
Sbjct: 173 GLSRETIPANFEHAITMLQWMFLVLALSIGIIVVIDAPYQVWNHNRQLKMTKQEIKDEHK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G+P IK R +       + +MM+    + ++ITNPTH+++AL+Y      APVL AK
Sbjct: 233 GTEGSPEIKGRIRRTQYEMSQRRMMQDVPESDVVITNPTHFSIALKYDAAAGGAPVLSAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY---- 350
           G + +A  +R IA EH I I + P+LARSL+    +   IP   + AVAQ++  I+    
Sbjct: 293 GVDEMALHIRTIAKEHQIEIIQSPALARSLYYTAEVGDDIPEELFAAVAQVLAFIFQLNE 352

Query: 351 HKK 353
           HKK
Sbjct: 353 HKK 355


>gi|170021382|ref|YP_001726336.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739]
 gi|169756310|gb|ACA79009.1| type III secretion exporter [Escherichia coli ATCC 8739]
          Length = 379

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 185/369 (50%), Gaps = 41/369 (11%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI--------YLLF----FF 51
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  +        Y  F    F 
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62

Query: 52  SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIG 108
           S   Y+   +   ++    +  L  +    F+LT L + A+ L+   +PG  LF+     
Sbjct: 63  SVHQYAQEINNPQVIGQFLRHHLLILGK--FILTLLPMPAAALLSSLVPGGWLFLP---- 116

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                         + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  
Sbjct: 117 ------------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRN 164

Query: 169 NYFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           N+   L  + A P  +  +     + +V +  +++ +F A   +LD+  +   +   LKM
Sbjct: 165 NFAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKM 220

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+
Sbjct: 221 TKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQS 280

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
              AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A 
Sbjct: 281 RAAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAH 340

Query: 345 LIYKIYHKK 353
           ++  +   K
Sbjct: 341 VLTYVLQMK 349


>gi|56419772|ref|YP_147090.1| flagellar biosynthesis protein FlhB [Geobacillus kaustophilus
           HTA426]
 gi|56379614|dbj|BAD75522.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426]
          Length = 360

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 133/231 (57%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  + R++  +G+KR++S+  LV  +KS +K  ++G ++  +L      +   +S  P 
Sbjct: 127 LKMDWNRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPG 186

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             L        K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+I
Sbjct: 187 EALTVVGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLI 246

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R K   R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A K
Sbjct: 247 KSRIKQKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMAMK 306

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++A  H +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 307 IKEVAKTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|283834479|ref|ZP_06354220.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
 gi|291070026|gb|EFE08135.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
          Length = 379

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 182/360 (50%), Gaps = 23/360 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKARQEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVRESF 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVI-----PGLLLFMMFGIGSYLIQRIPVL 118
           + +    Q  + D   I   L H  L   + ++     P   LF     G +L   +P  
Sbjct: 62  ISVHQYAQ-NINDPDIIGQFLEHHLLILGKFILTLLPMPVAALFASLVPGGWLF--LP-- 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--- 175
               + P F ++S  +GI R++S ++LV+  K  +K I++  ++ IS+  N    L    
Sbjct: 117 --KKILPDFSKLSPLKGISRLFSTDHLVDTGKMTLKAIVLLVMLWISVRNNVAAFLGLQE 174

Query: 176 --FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             F  A    +  ++  ++ +  +++ +F A   V+D+  +   +   LKM+KQE+K+E 
Sbjct: 175 LYFKQAISDGLALYS--SIMRNFVILFVFFA---VIDVPLAKKMFTKGLKMTKQEVKEEY 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K   G P ++ R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VA
Sbjct: 230 KNQEGKPEVRARIRRLQRQMAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVA 289

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + IA  +R++A E NI I E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 290 KGTDEIALYIRQVAAESNIEIVEFPKLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|260574396|ref|ZP_05842400.1| type III secretion exporter [Rhodobacter sp. SW2]
 gi|259023292|gb|EEW26584.1| type III secretion exporter [Rhodobacter sp. SW2]
          Length = 361

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 171/357 (47%), Gaps = 25/357 (7%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            E+D+ + + E PS ++++ A  +G  P S + S  ++    L+  +      +  +   
Sbjct: 4   GEDDSAEKEHE-PSQRRLDQAREKGQIPRSTDLSTAAAYGGLLLAAVALGEGSLRRIGDS 62

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI--------- 112
             VLL  + +            L+ L L+     + GLL+ + + +  + +         
Sbjct: 63  AAVLLDQSDR------------LSALMLTGGTAPLGGLLIAIGWAVAPFFLLPALAVFLA 110

Query: 113 ---QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
              QR  + + + + P   R+S  E  K  +  N L  F KSFVK++++  I+ + L +N
Sbjct: 111 VFAQRAFIFSPDKLMPKLSRISPIESAKNKFGRNGLFEFAKSFVKLLVISVILGMFLMQN 170

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
              +L  +   P S        V + L ++L+    +  LD  W   +   + +MS++++
Sbjct: 171 MDDVLGALYLEPASATLVLLRLVVQFLFLVLIIATAIGALDYLWQRSEHLRRNRMSRKDM 230

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
            DE K+S G+P  K +++        ++M+   + A +I+ NPTHYA+AL++ +    AP
Sbjct: 231 MDEHKESEGDPHSKAQRRQRGYDIATNRMLADVATADVIVVNPTHYAVALKWDRAAKRAP 290

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           V VAKG + IA ++R+ A E  +P+  +P  AR+L   V +   I P  Y+AVA  I
Sbjct: 291 VCVAKGVDEIAARIRERAAEAGVPMHRDPPTARALHASVEVGQEIRPEQYRAVAAAI 347


>gi|188586038|ref|YP_001917583.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350725|gb|ACB84995.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 363

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 185/356 (51%), Gaps = 24/356 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K   ++  +G   +++   L S++L    +   +    ++  + D  +  A 
Sbjct: 15  EKTETPTPKHRRESRKKGQ--VAKSTELTSALLLMATFSTLYI---VFPYSFDRFMNFAK 69

Query: 69  ATQRKLEDISH----IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                +  I++    I  LL  + +  +    P +++ ++ G+ S L+Q   +L  + +K
Sbjct: 70  QFWSNINTINYTMDEIHSLLITMMMEGAVFAAPVIIVAVLIGLISNLMQVGILLTGDPLK 129

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN-----YFTMLDF--I 177
           P  +R+   +G ++I+S   +V   KS  K++++G I  I    +     YF  +    I
Sbjct: 130 PKLERLDPIKGFQKIFSKRAVVELTKSLFKMVVIGIIAYILFNNHMEHFPYFYDMTVMQI 189

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +     + +   F V     M LLF++ L  +   W + Q    LKM+KQ++KDE KQ+ 
Sbjct: 190 AVEVGQLTWALIFRVG----MALLFLSILDYVYQVWEHEQ---NLKMTKQQVKDEHKQTE 242

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P ++++ K   R   + +MM     A ++ITNP H A+AL+Y + +  AP+++AKGQ 
Sbjct: 243 GDPQVRSKMKEKQREISKKRMMSEVPEADVVITNPVHIAVALKYDEGDT-APMVLAKGQG 301

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A+K+++IA +HN+ + E   LARSL+  V I   IP   Y+AVA+++  +Y  K
Sbjct: 302 HVARKIKEIAEDHNVVVMENRQLARSLYFSVEIGDFIPEELYQAVAEVLAFVYRLK 357


>gi|170725986|ref|YP_001760012.1| flagellar biosynthesis protein FlhB [Shewanella woodyi ATCC 51908]
 gi|169811333|gb|ACA85917.1| flagellar biosynthetic protein FlhB [Shewanella woodyi ATCC 51908]
          Length = 377

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 172/355 (48%), Gaps = 9/355 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + ++ E A  +G    S+E    + +LA  +  +    PGI    +
Sbjct: 1   MAENDSSQEKTEEATPRRREQAREKGQVARSKELGTSAVLLASAVGFVMA-GPGIAKALA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----IGSYLIQRIP 116
            +   L +  + ++ D + +  +   + L    L  P L L         IG+ ++  I 
Sbjct: 60  SIMTNLFTIDRAQVFDTNEMFLIWKFIGLE---LAFPILSLIAFLAVVSFIGNIVLGGI- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             ++    P   ++S  +G KR++ +  LV   K   K  +V       L+  +  +L  
Sbjct: 116 TFSVKAFMPKPDKMSPVKGFKRMFGVQALVELTKGIAKFSVVALAAYFLLSFYFDDILAL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              +    +YH+   +  + I++      + V+D+ +       +LKM+KQEIKDE K +
Sbjct: 176 SREHLPGNVYHSLDLLAWMFILLCSSTLLIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDT 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K + + + R   + +MM     A +I+ NP HYA+A++Y   ++ AP ++AKG 
Sbjct: 236 EGKPEVKGKVRQMQREMAQRRMMSEVPNADVIVVNPEHYAVAVKYDVMKSTAPYVLAKGV 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A K+R+IA EH I I   P LAR+++    I   IP   + AVAQ++  ++ 
Sbjct: 296 DDVAFKIREIAREHEIAIVSAPPLARAIYHTTKIEQEIPEGLFTAVAQVLAYVFQ 350


>gi|269105053|ref|ZP_06157748.1| type III secretion inner membrane protein HrpY [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160688|gb|EEZ39186.1| type III secretion inner membrane protein HrpY [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 352

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E  + S+++  L+ +LF F+    S  S L +L + 
Sbjct: 4   EKTELPTPKKLRDARQKGQVAKSQEV-VSSALILALVAVLFAFADYYMSHISALLLLPSE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   ++ +   ++     L+ P L++  +  I S + Q   + +   VKP  K
Sbjct: 63  LAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L +N  T+L   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRDNLNTLLQIPACGLECVPTIT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V++++I+  +    +   D  +       +LKM+K E+K E K+  G+P IK++++ 
Sbjct: 181 GVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +AK+M  IA+
Sbjct: 241 LHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAIAH 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +P+ ++  LAR+L+    +N  IP    +  A+++
Sbjct: 301 EEGVPVMQKVPLARALYADGQLNQYIPGDLIETTAEIL 338


>gi|254488460|ref|ZP_05101665.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101]
 gi|214045329|gb|EEB85967.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101]
          Length = 361

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 174/354 (49%), Gaps = 18/354 (5%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF--SPGIYSVT 59
            E+D  D   EA + K +E A  +G+  I++   L ++     +++ F +  S GI  ++
Sbjct: 3   GEDDDSDKSFEATAEKLLE-ARRKGD--IAKSTDLMTAAGYAGLFVAFAYVGSEGIALIS 59

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI----PGLLLFMM---FGIGSYLI 112
           + L VLL      +L DI    F     +  AS L+I    P L +F++     + +   
Sbjct: 60  TALMVLLDQPD--RLIDI----FFDGSAAAPASGLIISIILPALPIFLLPAIAVLVAIAA 113

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           QR  V   + + P   R+SL    K  +  N L  F KSF K+ +    + + +  N   
Sbjct: 114 QRAFVFAPSKIAPKLSRISLISNAKNKFGRNGLFEFAKSFFKLCIYSICLVLFIRANLHE 173

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           M+  +  +P S +          L++ +L  AT+  +D  W + +   K +MS++EI+DE
Sbjct: 174 MIAALQTDPASAISLMIEICLSFLLVTILISATIGGIDALWQHFEHLRKNRMSRKEIQDE 233

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K S G+P +K  ++  A    + +MM    +A +II NPTHYA+AL++ +   +APV V
Sbjct: 234 QKNSEGDPHLKQERRQRAMIVSQSQMMADVPKADVIIVNPTHYAVALKWSRLPGEAPVCV 293

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AKG + IAK +R    E  +P+  +P  AR+L     I   I P  ++AVA  I
Sbjct: 294 AKGVDEIAKAIRLKGAEAGVPLHSDPPTARALHATTDIGDMIAPEHFQAVAAAI 347


>gi|154249642|ref|YP_001410467.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153578|gb|ABS60810.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum
           Rt17-B1]
          Length = 384

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 186/353 (52%), Gaps = 17/353 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           A  +KTE  + +K + A  EG  PISRE  S    + A ++++L         +   L  
Sbjct: 33  ADPDKTEKATPRKRQKAREEGQVPISRELVSGLGFLFASMVFIL---------LGKRLID 83

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL-------IQRIPV 117
            L ++TQ   E   + +  L    + AS+   P  L+  +  +G+ L       +Q   +
Sbjct: 84  ALITSTQSVFEISDNDIRTLEDFIIYASQTFRPAFLVVAILVLGTALFSLIIGLLQTRFL 143

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                +K    R++   G+KR++S+ +L   +K+ +K+ ++G +    +  N+  +L  +
Sbjct: 144 FTFKPLKMDLNRLNPITGLKRMFSLRSLFELLKAILKLAIIGFVGYSVIKGNFDKVLLTV 203

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            ++        +  + +++I   + +  +++ D  +S +++   +KM+KQEIK+E K+  
Sbjct: 204 DSSLIDGTLIMWGVLSELIIKCGIALIVVSIADYYYSRYEYEQNIKMTKQEIKEEFKEIE 263

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK RQ+ I      H+MM+   +A+++ITNPTH+A AL+Y   E+ AP LVAKG +
Sbjct: 264 GNPEIKRRQRQIMMQFAMHRMMQEVPKASVVITNPTHFACALKYDPEEDFAPKLVAKGVD 323

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +A ++  IA ++++PI   P LAR ++    +   IP   YKAVA+++  +Y
Sbjct: 324 KVALRIIDIARKNDVPIVRNPRLAREIYYSTELGDIIPEKLYKAVAEVLAYVY 376


>gi|91200239|emb|CAJ73283.1| similar to flagellar biosynthetic protein FlhB [Candidatus Kuenenia
           stuttgartiensis]
          Length = 349

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 196/356 (55%), Gaps = 17/356 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG--IYSVTSDLH 63
           A   KTE P+ K+I +   +G+   S +    SS +A L+  L  ++ G  +Y+   ++ 
Sbjct: 2   ADTEKTEQPTGKRISEVRQKGSVAQSPD---LSSAIAILVGFLLLYALGNIMYAGMKEIT 58

Query: 64  VL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           V  L + +Q+ +     +  ++ ++ +SA  L+     L ++  I SY+ Q   +  L  
Sbjct: 59  VFTLQNLSQKDITPDIIVEKIIYYIYVSAKILLPILGGLLIVGLIVSYM-QTGLLFTLKP 117

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP   ++++  G+K+++++ + V  + S VK++L+G I  + + +     LD    N  
Sbjct: 118 LKPDLTKLNVISGVKKLFNVQSFVKLLFSVVKLLLIGGIGILYIKKE-LAKLD----NLI 172

Query: 183 SILYHAFFTVRKVLIMILLF---IATLTVLDIGWSYHQWYSK--LKMSKQEIKDEIKQSY 237
            I    FF +   L   L+    IA + +  + + Y +W  K  +KMSK+E+KDE KQ+ 
Sbjct: 173 DIGIAQFFILTTKLTFGLVMRVSIALVILAMVDYIYQKWQYKRGMKMSKKEVKDERKQAE 232

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P+IK++ +S        +M  A  +A +++TNPTHYA+AL+Y +    AP +VAKG +
Sbjct: 233 GDPVIKSKIRSAQIQMALKRMASAIPKADVVVTNPTHYAVALKYDRKSMHAPKVVAKGAD 292

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA K+++IA  + IPI EE SLAR+L+K V +   IP   Y AVA+++  +Y  K
Sbjct: 293 YIALKIKEIAKINKIPIVEERSLARTLYKTVDVGKEIPQKLYYAVAKVLSYVYGLK 348


>gi|331645394|ref|ZP_08346498.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
 gi|331045556|gb|EGI17682.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
          Length = 379

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 183/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q+    E I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQQINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLS----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +   L  + A P  +  +     + +V +  +++ +F A   +LD+  +   +   LKM+
Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  + 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|91792697|ref|YP_562348.1| flagellar biosynthesis protein FlhB [Shewanella denitrificans
           OS217]
 gi|91714699|gb|ABE54625.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
           OS217]
          Length = 377

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 175/357 (49%), Gaps = 13/357 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE P+ +++E A  +G    S+E    + +LA  +    F   G     S
Sbjct: 1   MAENDSSQEKTEEPTGRRLEQAREKGQIARSKELGTAAVLLASSVG---FMMTGPALAKS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++    T  + + I     +     +  + L IP L    M  + S+L   I +  +
Sbjct: 58  LFRIMEQILTMERAQ-IFDTNSMFRVWGVIGTELAIPLLSFIGMLAVVSFL-GNIVLGGI 115

Query: 121 N-HVK---PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           N  VK   P   +++   G KR++    LV   K   K  +V       L   +  +L  
Sbjct: 116 NFSVKAFMPKGSKMNPMSGFKRMFGTQALVELTKGIAKFSVVAFSAYFLLDFYFVDILQL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIK 234
            + +  +  YHA   +  V + ILL  +TL ++ I   +  W    +LKM+KQEIKDE K
Sbjct: 176 SNDHLPNNAYHALDLL--VWMFILLCSSTLLIVIIDVPFQIWNHNKQLKMTKQEIKDEYK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G P +K R + + R   + +MM    +A +I+ NP HYA+A++Y  + + AP +VAK
Sbjct: 234 DTEGQPEVKARVRQMQREMAQKRMMAEVPKADVIVVNPEHYAVAVKYDASRSTAPFVVAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           G + +A ++R IA EH++ I   P LAR+++    ++  +P   + AVAQ++  ++ 
Sbjct: 294 GIDEVAFQIRAIAREHDVAIVSAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQ 350


>gi|28898449|ref|NP_798054.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260365107|ref|ZP_05777678.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus K5030]
 gi|260876610|ref|ZP_05888965.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AN-5034]
 gi|260895029|ref|ZP_05903525.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus Peru-466]
 gi|260900960|ref|ZP_05909355.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ4037]
 gi|28806666|dbj|BAC59938.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085922|gb|EFO35617.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus Peru-466]
 gi|308093607|gb|EFO43302.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AN-5034]
 gi|308110774|gb|EFO48314.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ4037]
 gi|308111655|gb|EFO49195.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus K5030]
          Length = 351

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTEQPTAKKLRDARKKGQVAKSQEI-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   ++ +   ++   + L+ P +L+  +  I S + Q   + +   +KP  K
Sbjct: 63  LAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T++   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPAVT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  IA 
Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAIAR 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +P+ ++  LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVL 338


>gi|297530588|ref|YP_003671863.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3]
 gi|297253840|gb|ADI27286.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3]
          Length = 360

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 133/231 (57%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  + R++  +G+KR++S+  LV  +KS +K  ++G ++  +L      +   +S  P 
Sbjct: 127 LKMDWNRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPG 186

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             L        K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+I
Sbjct: 187 EALTVVGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLI 246

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R K   R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A K
Sbjct: 247 KSRIKQKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALK 306

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++A  H +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 307 IKEVAKTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|323191512|gb|EFZ76773.1| flhB HrpN YscU SpaS family protein [Escherichia coli RN587/1]
          Length = 379

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 184/367 (50%), Gaps = 37/367 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F      V     
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62

Query: 64  VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110
            +   A +    D+       H++    F+LT L + A+ L+   +PG  LF+       
Sbjct: 63  SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                       + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N+
Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNF 166

Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
              L  + A P  +  +     + +V +  +++ +F A   ++D+  +   +   LKM+K
Sbjct: 167 AAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+  
Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++
Sbjct: 283 AAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342

Query: 347 YKIYHKK 353
             +   K
Sbjct: 343 TYVLQMK 349


>gi|317182082|dbj|BAJ59866.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F57]
          Length = 358

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 178/356 (50%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-------SPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF       S     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EHNI I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHNIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|255022047|ref|ZP_05294053.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
 gi|254968533|gb|EET26089.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
          Length = 380

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 188/377 (49%), Gaps = 60/377 (15%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    + KTE  S K+++DA  +G  P S++ +      A L+         +++ T+
Sbjct: 1   MSE---AEEKTEKASQKRLDDAKKDGKVPRSQDWT------ASLV---------LFAATA 42

Query: 61  DLHVLLASATQRKLEDISHIVFLLT----HLSLSASRLVI----PGLLLFMMFGIGSYLI 112
              +L A++     E +S +V  L+    H      R ++    P  ++F+MFG G  L+
Sbjct: 43  ---LLWAASGSWGTEILSRMVVGLSVSSLHFRADWQRTILQEAAPLFVVFLMFG-GVILV 98

Query: 113 QRIPVLNLNH---VKPS----FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
             I  + L       P     + R+S   G+KR ++        +  VK  L+G  + + 
Sbjct: 99  SAIASILLVGGWVWSPGKLWEWDRLSWTSGLKRPFTKKGFSVLWEDSVKTGLLGVCMGLI 158

Query: 166 LTEN---YFTMLDF-----ISANPHSILYHAFFTVRKVLIM---ILLFIATLTVLDIGWS 214
           +      +F +LD      IS    +IL   FF    +L++   I  F+     L+    
Sbjct: 159 VWGQKGVWFALLDIPPRRAISLGA-AILVKDFFIFASLLLVPGAIDWFLQRRFFLE---- 213

Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274
                   KMSKQ+IKDE K+  GNP+IK+R + + R   R +MM++  +A++++ NP H
Sbjct: 214 ------SQKMSKQDIKDEHKEVDGNPLIKSRIRRLQRRIARMRMMKSVEKASVVLINPEH 267

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           YA+ALRY ++    P++ AKG + IA K+R+IA  H +PI E PS+ARSL+K   I   I
Sbjct: 268 YAVALRYTESMT-VPIVTAKGIDTIALKIREIAKIHGVPILEAPSMARSLYKVCDIGDLI 326

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA ++  I H
Sbjct: 327 PAGLYEAVAIVLAYIDH 343


>gi|237751072|ref|ZP_04581552.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879]
 gi|229373517|gb|EEO23908.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879]
          Length = 372

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 180/357 (50%), Gaps = 28/357 (7%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KT APS +KI+ A  EG+   S +      ++  L+ L   F P    +   L+V 
Sbjct: 2   AEEEKTHAPSQRKIQKAREEGSVAKSPDLVGLVGLVVGLMLLFIIF-PFWVKIFKGLYV- 59

Query: 66  LASATQRKLEDIS-HIVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               T+  L D + H +F +T   L  + L  +P     M+ GI   + Q   +L+   +
Sbjct: 60  --ECTKLFLVDFNMHTIFAITLTILKVAALCAMPFFFALMVAGIIGNVAQFGFLLSFKII 117

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT----ISLTENYFTMLDF--- 176
           KP   +++  +G K ++S+  L++           G IIT    I+    +F  + F   
Sbjct: 118 KPKVDKINPIKGAKNLFSLKKLLD-----------GFIITLKVFIAFAVGFFIFVGFLDE 166

Query: 177 ---ISANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
              IS +P       F+    +LI  LLF+   + +LD     +Q+   L+MSKQE+KDE
Sbjct: 167 VANISMSPLKEQLTWFYQKALILIGALLFLFLVMGILDFLIKRYQYIKSLRMSKQELKDE 226

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            KQ  GN  +K + + I      +KMM A   A +++TNPTHYA+ALR+      APV+V
Sbjct: 227 FKQQEGNQEVKAKIRQIMMKNAMNKMMSAIPSANVVVTNPTHYAVALRFNSETESAPVVV 286

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           AKG + +A +++ IA EH I I E P LAR L++ V ++  IP   ++AV +L  ++
Sbjct: 287 AKGIDHLAVRIKGIAREHEILIIENPPLARELYRLVDVDRMIPGEMFEAVVELFQQV 343


>gi|39995534|ref|NP_951485.1| flagellar biosynthesis protein FlhB [Geobacter sulfurreducens PCA]
 gi|39982297|gb|AAR33758.1| flagellar biosynthetic protein FlhB [Geobacter sulfurreducens PCA]
 gi|298504535|gb|ADI83258.1| flagellar biogenesis protein FlhB [Geobacter sulfurreducens KN400]
          Length = 352

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 192/353 (54%), Gaps = 14/353 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D   +KTE P++KK+++A  +G  P SR+ +   +++A ++ L   ++ G +  T+   
Sbjct: 2   SDDKHSKTEKPTAKKLDEAKKKG-VPHSRDLTSTVTLIAAMVAL---YTTGGFMFTTLKR 57

Query: 64  V---LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LL S     L + S +  LL  L L    +V+P +L+ ++ G+ + ++Q    +N 
Sbjct: 58  TSGELLGSMGTFHLTEAS-VEHLLIKLFLVFLSVVMPFMLVVVISGLATTMVQVGFSMNS 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDFI 177
             +     +++     +++++ ++LV  +K+ +KI++VG +   I     +    + D  
Sbjct: 117 ERITFKLDKLNPVTNAQKLFNKDSLVEMLKAVLKIVIVGYMSYKIMRDEMDGLLFLADTD 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            A    +  H  F   K++I     +  L VLD+ +   ++   LKM+KQE+KDE K+S 
Sbjct: 177 LAGILEVFKHLAF---KLVIHTCGVLLILGVLDLAFVKWRFIDNLKMTKQEVKDEHKESE 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K + + +   + + ++ +    A +++TNPTHYA+AL+Y +    AP+++AKG +
Sbjct: 234 GDPKVKGKIRQMQFQQAQKRLRKVIPTADVVVTNPTHYAVALKYERETMAAPLVLAKGVD 293

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +A+ ++ IA E+N+ + E   LAR L+ QV     IP   Y AVA+++  +Y
Sbjct: 294 HMAQTIKAIARENNVMLVENRFLARELYAQVKEGQPIPESLYTAVAEVLAYVY 346


>gi|253990145|ref|YP_003041501.1| flagellar biosynthesis protein FlhB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639018|emb|CAR67632.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781595|emb|CAQ84758.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica]
          Length = 383

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE P+  K E A  EG    SRE    SSIL     L   +  G  S+  +L 
Sbjct: 3   EDSDLEKTEEPTPHKREKARKEGQIARSRE---LSSILMLTSGLSLLWLSG-QSIAHELS 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +++          + +   +V  +  L   A   ++P     ++  + +  +    V + 
Sbjct: 59  LMVFEGFNFDHSMVSNDKQMVQQIGRLLRQAVWALLPVFAGLVLVALSAPALLGGLVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+++   G+KRI+S+N L    K+ +K   VG    + L  N+ +ML  I+  
Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPSMLRLIAQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   +     +++  +  +   D+ +  +    KL+M++QEIKDE K+  G+P
Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG  +IA
Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALQYDEKQMSAPKVLAKGAGIIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++++  E+ IP+ E P LAR+L++   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIKEMGTENRIPLLEAPPLARALYRHSEVGGHIPATLYAAVAEVLAWVYQLK 351


>gi|149191144|ref|ZP_01869402.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
 gi|148834982|gb|EDL51961.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
          Length = 382

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 183/350 (52%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+    +K+E PS  K+  A  EG  P ++E    SS+   LI ++ ++   I  +  
Sbjct: 1   MSEHQDSGDKSEQPSQHKLSKARREGQVPRAKE--FVSSV--TLISVVAYYVLNIDMIKQ 56

Query: 61  DLHVLLASATQRKLEDISHI---VFLLTHLSLSASRLVIPGLLLFMMFGI-GSYLIQRIP 116
               L   + Q   + ISH    V LL     S   L  P L+  ++  I GS L+    
Sbjct: 57  TFIELFLVSFQFDTQTISHWMTSVELLGTALFSMVMLFFPLLIYQIIAAIFGSTLLGGW- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +L+ + + P  +++S  +GIKRI+S  ++V   K+  K+ L  +++   ++     + + 
Sbjct: 116 ILSPSLLTPKLEKISPIKGIKRIFSTQSVVELFKNVFKVTLFFSLLYWVISSYISVITNL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +SA+  ++++       + L  +LL +    + D  +  H++  ++KM+KQE+KDE K+ 
Sbjct: 176 VSAHFDTVVFTVATITIEYLGYLLLIVLIFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQ 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K R + I     +    E   +A +++TNPT YA+AL Y  T+ +AP +VAKG+
Sbjct: 236 EGRPEVKARIRQIQTQNAKRGANERVPKANVVLTNPTQYAVALIYDLTQAEAPFVVAKGK 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + +A  +R++A +H++ + E   L R+++    ++  +P   + A+A ++
Sbjct: 296 DEVAVYIRELAAKHSVEVVESAELTRAIYNTTQVDQMVPNQLFVAIAHIL 345


>gi|163802012|ref|ZP_02195908.1| translocation protein in type III secretion [Vibrio sp. AND4]
 gi|159174153|gb|EDP58961.1| translocation protein in type III secretion [Vibrio sp. AND4]
          Length = 350

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 177/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTELPTPKKLRDARKKGQVAKSQEV-VSSALILALIAVLFAFADYYMSHISALLLLPSK 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +   D   ++ +   ++     L+ P L++  +  I S + Q   + +   VKP  K
Sbjct: 63  LAYQGFHD--ALIDVAIAIAEEIIYLLAPILIVAALVAIMSNMAQFGLLFSGESVKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +V+  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T+L   +     +    
Sbjct: 121 KVNPAEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPAIT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V++++I+  +    +  +D  +       +LKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GVLVKQLMIISSVGFIVIAAVDYAYQKFNHTKQLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        +   R+ +++TNPTH A+ L Y + E   P++  K  + +AK+M  IA 
Sbjct: 241 LHQEMQSSNQRDNVKRSNVLVTNPTHIAIGLYYKKDETPLPIITLKETDAMAKRMIAIAR 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  IP+ ++  LAR+L+    ++  IP    ++ A+++
Sbjct: 301 EEGIPVMQKVPLARALYADGQLDQYIPGELIESTAEIL 338


>gi|42524691|ref|NP_970071.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100]
 gi|39576901|emb|CAE78130.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100]
          Length = 353

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 196/371 (52%), Gaps = 37/371 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLL--FFFSPGIY 56
           M+E++    K+E  +  + E+    GN   ++E +    +LA    +Y L  FFF   +Y
Sbjct: 1   MAEDNG--EKSEEATDARREEFRKRGNVAHTKELASAVMLLAAAGGVYALGRFFFKE-MY 57

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            V    H       +   E   +      +  + A  L+ P LL   + G  S ++Q I 
Sbjct: 58  EVFQ--HSFGDDMVKMVRE--GNFTEAAQYCGMKAMILIAPVLLFAGIIGAASSIVQ-IG 112

Query: 117 VLNL-NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            L + + V P+F++V+  EG KR++S+  +V  +KS +K+  V  ++       YF +  
Sbjct: 113 FLQVEDAVSPNFEKVNPVEGFKRVFSMRAVVEALKSILKMGAVAMVL-------YFLLRS 165

Query: 176 FISANPHSILYH-----AFFTVRKVLIMILLFIATLTVLDIGWSY-HQWYS---KLKMSK 226
            ++  P+ + Y      A+  V  +++ +L  +  + ++  G  Y +Q +    K+ M+K
Sbjct: 166 EVTQVPYMLTYSIDQIIAYIGV--IVVKLLGGVGAVMLVIAGADYFYQRFDLEKKMMMTK 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E KQ  G+P+IK+R + I R     +MM    +A ++ITNPTH A+ L+Y  T+N
Sbjct: 224 QEVKEEHKQREGDPMIKSRIRRIQREMASKRMMSEIPKADVVITNPTHIAVVLKY--TDN 281

Query: 287 -DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VA G + +A+K+++IA E+N+PI E   LAR++FK + I   IP   + AVA++
Sbjct: 282 LPAPQIVAMGADHVAEKIKEIARENNVPIVENKPLARTIFKTLKIGQVIPRELFVAVAEV 341

Query: 346 ---IYKIYHKK 353
              +Y++  KK
Sbjct: 342 LSYVYRLRRKK 352


>gi|251797425|ref|YP_003012156.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
 gi|247545051|gb|ACT02070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
          Length = 365

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 193/353 (54%), Gaps = 17/353 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----FFSPGIYSVTSDL- 62
            KTE  + KK ++A  +G   I++   L SS++    +  F     ++   I SV  +L 
Sbjct: 16  EKTEKATPKKTQEARKKGQ--IAKSNDLPSSMILLFTFATFAALGSYYKTRIMSVFQELF 73

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            + L    T       ++I+ L   L++     + P   + ++  I   ++Q   +L   
Sbjct: 74  DNWLTMDVT------TANIMPLFDKLAVDMLMFLAPIFAIVVIVAILGNVVQFGFLLTGE 127

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +KP F +++   G K+I+S+  +V F+KS +K++++G ++  ++  ++  +L   S + 
Sbjct: 128 SLKPKFSKLNPINGFKQIFSMRTVVEFLKSILKLLIIGILVYRAIWSDWDKILVLSSLSV 187

Query: 182 HSIL-YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             I  + A  TV K+ +     +  L   D  +  ++    L+MSKQ+IKDE K+S G+P
Sbjct: 188 QQIFSFTAGLTV-KLGLETGAVLVILAFADYMYQRYEHAKSLRMSKQDIKDEYKKSEGDP 246

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK + +   R     +MM+   +A ++ITNPTH+A+AL+Y  ++ +AP+++AKG + +A
Sbjct: 247 LIKGKIRERQRRMAMQRMMQEVPKADVVITNPTHFAIALQYDASKMEAPLIIAKGMDHLA 306

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH + + E   LAR+L+++  I  +IP   ++AVA+++  +Y  K
Sbjct: 307 LRIREVAKEHGVVMMENKPLARALYERADIGDSIPADLFQAVAEVLAAVYKMK 359


>gi|160880828|ref|YP_001559796.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans
           ISDg]
 gi|160429494|gb|ABX43057.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans
           ISDg]
          Length = 373

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 187/351 (53%), Gaps = 9/351 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDLHVL 65
            KTE  ++KK+EDA  EG    S++    S +LA  + +  F    + G     S  +  
Sbjct: 25  EKTEEATTKKLEDARKEGQVARSQDLITASGLLALFMVIKLFSGYIAGGFLDAFSKSYKE 84

Query: 66  LASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           + +  +   E++++ +   L+  + ++   + +P  +  ++      + Q    L    +
Sbjct: 85  IETLAK---EEMTYQIGSKLMNQMGINILLICLPVFITGVVVAFVVNIFQVKWKLTGKPL 141

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM-LDFISANPH 182
           +P F +++   G K++ S++ ++  +KS +K+ ++  I+  +L +    + L +   N  
Sbjct: 142 QPKFNKINPLSGFKKMLSMDKIMELVKSIIKVGIIIYIVYNALKDELGKLYLLYEMGNLE 201

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            ++ +    V  + I I +    + + D  +   ++   ++M+KQEIKDE KQS G+P I
Sbjct: 202 VVIAYIGSIVLDLGIKISVLFIVVGLADFIYQKIKFKKDMRMTKQEIKDEFKQSEGDPQI 261

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++ K   R   + +MM+    A ++ITNPTH+A AL+Y +  ++AP+L+AKG +L+A K
Sbjct: 262 KSKIKQKMRQASQRRMMQRLPEADVVITNPTHFACALKYDKEVSEAPILIAKGADLLAAK 321

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA E+ IPI E   LAR L+  V I S IP   Y+ VA+++  +Y  K
Sbjct: 322 IKEIAKENEIPIVENKPLARMLYYNVDIESEIPGELYQMVAEVLAYVYSLK 372


>gi|27550054|gb|AAO18037.1| LscU [Photorhabdus luminescens]
          Length = 351

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 177/339 (52%), Gaps = 5/339 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S E    S IL  LI ++   S       S L ++ A+
Sbjct: 4   EKTEKPTPKKLRDARKKGQVTKSNEVVSTSLILG-LIGMMMVMSEYYLEHLSKLMLIPAN 62

Query: 69  ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
              +   + ++H+V    +L      L +P L +  +  + S+  Q   +L+ + +KP  
Sbjct: 63  LLDKPFPQALNHVV---ENLMQELVYLCLPILSVSALLSLASHFAQYGFLLSGHSIKPDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+++  EG KRI+SI +LV F+KS +K+ L+ T++ ++L  N   +L         I   
Sbjct: 120 KKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWVTLAGNLQALLYLPECGEKCITPV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + +++ +  +    +++ D  + ++Q   +L+MSK EIK E K+S G+P IK++++
Sbjct: 180 LGMMLTQLMTVCGIGFIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +      M  +   +++I+ NPTH A+ +RY + E   P++  K  +  A ++R+IA
Sbjct: 240 QFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRIA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            E  IP+ +   LAR+L++   I+  IP    +A A+++
Sbjct: 300 EEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVL 338


>gi|238752885|ref|ZP_04614350.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380]
 gi|238708924|gb|EEQ01177.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380]
          Length = 377

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 172/353 (48%), Gaps = 33/353 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+E P++ K+  A  +G+ P S++ ++ + ++A LI L  F     Y        L  S
Sbjct: 7   EKSEKPTTGKLTKARKKGDIPRSKDVTMAAGLVASLITLTLFMP--YYKELIKESFLAVS 64

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV----------- 117
               +++D +                 +  LL   +F  G +LI  IP+           
Sbjct: 65  RMASRMDDPT----------------ALEQLLRINLFIFGKFLITLIPIPLASIVATLIP 108

Query: 118 --LNLNHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              N   VK  P  K++S   GIK+I+S +N    +K   K  +V   + I +  +   +
Sbjct: 109 GGWNFTPVKLIPDLKKLSPIAGIKKIFSASNGTEVLKMLAKCSIVLYTLYIMVNNSLADL 168

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L   +      +   F     +L+  +  I    V+DI  S + +  K+KM+KQE+K E 
Sbjct: 169 LRLQALPLLEAITEGFSLYHGILVYFITIIVIFAVIDIPLSTYLFKKKMKMTKQEVKQEH 228

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + GNP IK R + + R     ++ ++   A +IITNPTH+++AL+Y   +  AP +VA
Sbjct: 229 KSNDGNPEIKARVRQLQRQFSMGQINKSVPNADVIITNPTHFSVALKYSPEKASAPYIVA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           KG++ IA  +R +A ++NI I E P LAR+++    +N  +P   Y+A+AQ++
Sbjct: 289 KGKDDIALYIRSVAEKNNIEIVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVL 341


>gi|170683079|ref|YP_001742349.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5]
 gi|170520797|gb|ACB18975.1| lateral flagellar export/assembly protein LfhB [Escherichia coli
           SMS-3-5]
          Length = 379

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 184/367 (50%), Gaps = 37/367 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F      V     
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62

Query: 64  VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110
            +   A +    D+       H++    F+LT L + A+ L+   +PG  LF+       
Sbjct: 63  SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                       + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  N+
Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNF 166

Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
              L  + A P  +  +     + +V +  +++ +F A   ++D+  +   +   LKM+K
Sbjct: 167 AAFLG-LQALPFKLAINDGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+  
Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++
Sbjct: 283 AAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342

Query: 347 YKIYHKK 353
             +   K
Sbjct: 343 TYVLQMK 349


>gi|85058003|ref|YP_453705.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str.
           'morsitans']
 gi|84778523|dbj|BAE73300.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str.
           'morsitans']
          Length = 387

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 174/359 (48%), Gaps = 35/359 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFFF 51
            K+EAP+  +++ A  EG  P S+E                     +  +  ++     F
Sbjct: 8   EKSEAPTPHRLQKARKEGQVPRSKELVSWLMLLSGWSLLWLAGGHLAQGMGLMLESGLTF 67

Query: 52  SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
           S   + +  D H LLA  +    + +     L+  ++L A+    P L+  +MF      
Sbjct: 68  S---FHINGDRHWLLAQFSGLVRQALLACAPLILGVTLVAAG--APMLIGGVMF------ 116

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                  +   V    KR++   G+KR++S+  +  F+K+  K+ LVG     +L   + 
Sbjct: 117 -------SSKAVSLDLKRLNPFSGLKRLFSMQMIAEFIKTLFKVCLVGGACGTALWFVWP 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M       PH ++  +   + + +++I+L +  +   DI +       KL+MS+ +I++
Sbjct: 170 RMTQLAQGAPHRVMAESLSLISQCVLVIILALIPVVGFDILYQLFSHMKKLRMSRHDIRE 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K+  G+P +K+  +   R + + +MM+  ++A ++I NPTHYA+AL+Y Q     P L
Sbjct: 230 EYKEQEGDPQLKSLIRQRQRQQAQQRMMQDVAKADVVILNPTHYAVALKYEQMRMTTPRL 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +AKG   +A  +R+ A +H IP    P LAR+LF+   I SAIP   Y AVA+++  +Y
Sbjct: 290 LAKGAGAVALNIRQRAEQHRIPTLVAPPLARALFRHCEIGSAIPVALYGAVAEVLAWVY 348


>gi|269963167|ref|ZP_06177502.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832131|gb|EEZ86255.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 350

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 177/347 (51%), Gaps = 21/347 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTELPTPKKLRDARQKGQVAKSQEI-VSSALILALITVLFAFADYYMSHISALLLLPSE 62

Query: 69  ATQRKLEDI---------SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
              +  +D            +V+LL  + L A+       L+ +M  +G +      + +
Sbjct: 63  LAYQGFQDALLDVAIAIAKEMVYLLAPIILVAA-------LIAIMANMGQFGF----LFS 111

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              VKP  K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T+L   + 
Sbjct: 112 GESVKPDIKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLKGNLNTLLQIPTC 171

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               +       +++++I+  +    +   D  +       +LKM+K E+K E K+  G+
Sbjct: 172 GLECVPTITGVLIKQLMIISAVGFIVIAAADFAYQKFHHTKQLKMTKDEVKREYKEMEGS 231

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK++++ + +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +
Sbjct: 232 PEIKSKRRQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAM 291

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AK+M  IA E  IP+ ++  LAR+L+    +N  IP    +A A+++
Sbjct: 292 AKRMIAIAKEEGIPVMQKVPLARALYSDGQLNQYIPGDLIEATAEIL 338


>gi|260779326|ref|ZP_05888218.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605490|gb|EEX31785.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 375

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 181/348 (52%), Gaps = 6/348 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           MSE  + D KTE  S +KI+ A  EG  P ++E +  +  LA  +Y   F+S  P I+  
Sbjct: 1   MSEQSSQD-KTEKASPQKIKKARQEGQIPRAKEFTTAAIFLAVAVY---FYSQLPVIWES 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +     + T++ L +   +V  L H       L++P  ++ +   + S ++    + 
Sbjct: 57  IAGIFRFNMTLTKQDLANPKQMVEQLGHSLGMIITLLLPMFVVIIAVTLASTMVLGGWMF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
            L +V P   +++   GIKR++S  +LV  +KS +K++++  ++   L  +   +L    
Sbjct: 117 RLANVFPKLSKLNPLSGIKRMFSTRSLVELLKSTLKVLVIFGVLYAYLDNHLQPLLGMQR 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +    + +    +   L+M+   +    V+DI +   +   +LKM+KQE+K+E K + G
Sbjct: 177 LSLEQGVVNVMQILFDGLLMMGFALLLFGVIDIPYQRWEHMKELKMTKQELKEEYKNNEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
            P +K R + I +   R K+ +    A ++ITNPTHYA+A++Y    +DAP +VAKG + 
Sbjct: 237 RPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVAMKYDPALSDAPFVVAKGVDE 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +++IA E+ + I   P L RS++    I  A+P   Y AVA ++
Sbjct: 297 TAMHIQRIARENQVEIINSPPLTRSIYYTTAIEQAVPSQLYIAVAHIL 344


>gi|261419437|ref|YP_003253119.1| flagellar biosynthesis protein FlhB [Geobacillus sp. Y412MC61]
 gi|319766252|ref|YP_004131753.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52]
 gi|261375894|gb|ACX78637.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC61]
 gi|317111118|gb|ADU93610.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52]
          Length = 360

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 127/220 (57%)

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
           +G+KR++S+  LV  +KS +K  ++G ++  +L      +   +S  P   L        
Sbjct: 138 QGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTVVGGLTV 197

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
           K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K   R  
Sbjct: 198 KMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIKQKQREM 257

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
              +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A K++++A  H + 
Sbjct: 258 AMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVAKTHGVV 317

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 318 TVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|153836170|ref|ZP_01988837.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ3810]
 gi|149750445|gb|EDM61190.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ3810]
          Length = 351

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 178/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTEQPTAKKLRDARKKGQVAKSQEI-VSSALILALIAVLFAFADYYMSHISALLLLPSE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   ++ +   ++   + L+ P +L+  +  I S + Q   + +   +KP  K
Sbjct: 63  LAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T++   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPAVT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        E   R+ +++TNPTH A+ L Y + E   P++     + +AK+M  IA 
Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPIITLMETDAMAKRMIAIAR 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +P+ ++  LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVL 338


>gi|262167479|ref|ZP_06035185.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27]
 gi|262024051|gb|EEY42746.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27]
          Length = 359

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180
           P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  + +   LD    N
Sbjct: 106 PKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQN 165

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 166 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 221

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 222 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 281

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 282 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334


>gi|157147128|ref|YP_001454447.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC
           BAA-895]
 gi|157084333|gb|ABV14011.1| hypothetical protein CKO_02905 [Citrobacter koseri ATCC BAA-895]
          Length = 377

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 167/342 (48%), Gaps = 11/342 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +K+E P+  K+  A  +G+ P S++ ++ + +LA    L  F  P    +  +    +  
Sbjct: 6   DKSEKPTPGKLRKAREKGDLPRSKDLTMAAGLLASFFTLAAFL-PYYQQLIRESFAAVGE 64

Query: 69  ATQRKLEDISHIVFLLTH----LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              R  +  +   F+L +    L   A+ + IP   +      G +      +     +K
Sbjct: 65  MAGRLDDPTALNQFMLLNVWVVLRFIATLIPIPLCCIVASLVPGGW------IFTPTKLK 118

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P FK++S   GIKR++S ++     K  +K  ++ T++ + + ++   +L          
Sbjct: 119 PDFKKLSPISGIKRMFSASHYTEVGKMLLKCGIILTVLYMMVHDSMHALLHLQQLYLRQA 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +   F   R V    +  I    +LD+  S   +  K++M+KQE+K+E K + GNP IK 
Sbjct: 179 IGQGFAIFRHVFSYFIAVIVIFALLDVPLSKFMFTKKMRMTKQEVKEEYKNNDGNPQIKG 238

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R + + R     ++      A +IITNPTHYA+AL+Y     +AP +VAKG + +A  +R
Sbjct: 239 RIRQLQRQMAMGQIARTVPTADVIITNPTHYAVALKYDPQRAEAPYIVAKGIDDVALWIR 298

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++   HNI + E P LAR+++    +N  IP   ++A+A ++
Sbjct: 299 EVGANHNIEVVEFPPLARAVYYTTRVNQQIPTQLFRAIAHVL 340


>gi|327484648|gb|AEA79055.1| Flagellar biosynthesis protein FlhB [Vibrio cholerae LMA3894-4]
          Length = 359

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180
           P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  + +   LD    N
Sbjct: 106 PKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQN 165

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 166 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 221

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 222 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 281

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 282 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334


>gi|218703503|ref|YP_002411022.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026]
 gi|293403334|ref|ZP_06647425.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378945|ref|ZP_06988826.1| type III secretion protein SctU [Escherichia coli FVEC1302]
 gi|300898063|ref|ZP_07116432.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           198-1]
 gi|218430600|emb|CAR11466.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia
           coli UMN026]
 gi|291429187|gb|EFF02207.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280058|gb|EFI21562.1| type III secretion protein SctU [Escherichia coli FVEC1302]
 gi|300358241|gb|EFJ74111.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           198-1]
          Length = 379

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     + I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI+R++S  +L    K  VK  +V  ++ +SL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +   L  + A P  +  +     + +V +  +++ +F A   +LD+  +   +   LKM+
Sbjct: 166 FAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+ 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E  + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|323496542|ref|ZP_08101596.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326]
 gi|323318386|gb|EGA71343.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326]
          Length = 376

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 189/357 (52%), Gaps = 10/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++ +
Sbjct: 1   MAESDGQE-RTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVSLMWFGESLARALFT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L   + +   + +      L  L+     L++  + LF+    G+  +  I   ++
Sbjct: 60  VMERLFTLSREEIFDQVKLFDLALGSLTSLILPLILILVTLFIAAVAGAAGVGGIS-FSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTM-LDF 176
               P + +++   G+KR+  + + V  +KS +K+ LV  +   +  +  E+ F + +D 
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              N    ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++
Sbjct: 179 FPQN----IFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKET 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++VAKG 
Sbjct: 235 EGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNSDRAPIVVAKGT 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 295 DHMALKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351


>gi|217077044|ref|YP_002334760.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B]
 gi|217036897|gb|ACJ75419.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B]
          Length = 312

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 163/273 (59%), Gaps = 10/273 (3%)

Query: 88  SLSASRLVIPGLLLF----MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           ++ A + VI  L++F    M+ GI +  +Q   ++    +K  F +++   G+KR++S+ 
Sbjct: 40  TIEAFKGVIIDLIIFVGLVMITGIITGSLQTKFLITFKSIKLDFSKINPISGLKRMFSLR 99

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTML---DFISANPHSILYHAFFTVRKVLIMIL 200
           +L   +KS +K+++VG +  + +  N+  +L   D   +    +++   F   ++LI   
Sbjct: 100 SLFELLKSILKLVIVGYVGYLVVKSNWNKLLLATDTSVSEGALLIWDITF---ELLIKCG 156

Query: 201 LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260
           + +  +++ D  +S +++   ++M+KQE+K+E K+  GNP IK +Q+ I      H+MM+
Sbjct: 157 IALFIVSIADYFFSRYEYEKNIRMTKQEVKEEFKEVEGNPEIKRKQRQIMMQYSMHRMMQ 216

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
               AT+++TNPTH+A+A++Y   E D P++VAKG + +A+K+++IA ++N+PI   P L
Sbjct: 217 EVPEATVVVTNPTHFAVAIKYDSDEMDVPIVVAKGADKLAQKIKEIARKNNVPILRNPPL 276

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           AR L+  V I   IP   Y+AVA+++  +Y  K
Sbjct: 277 ARELYFSVEIGDEIPQKLYRAVAEVLAYVYTLK 309


>gi|298736474|ref|YP_003729000.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8]
 gi|298355664|emb|CBI66536.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8]
          Length = 358

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 177/357 (49%), Gaps = 41/357 (11%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFF---FSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E      L + +++  I+ +++   FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
             D  +  +  + Q     ++   FLL    L    +V     LF +   G     ++  
Sbjct: 62  LKDFSLDFSKESVQELFNQLAKDTFLLLLPILIILMVVA---FLFNVLQFGWLFAPKV-- 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                ++P F +++   G+K ++S+  L++           G++IT+ +   +F      
Sbjct: 117 -----IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIF 160

Query: 178 SANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSK 226
           S     + + A   ++  L+             L     L  +D+     Q+ + LKM+K
Sbjct: 161 SLFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTK 220

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+
Sbjct: 221 QEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEH 279

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
             PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 280 PVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|255745141|ref|ZP_05419090.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101]
 gi|262153469|ref|ZP_06028599.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1]
 gi|255736971|gb|EET92367.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101]
 gi|262030706|gb|EEY49340.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1]
          Length = 330

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180
           P   +++   G+KR++ + + V  +KS +K++LV  +    I  S  + +   LD    N
Sbjct: 77  PKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQN 136

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 137 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 192

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 193 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 252

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 253 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 305


>gi|315648120|ref|ZP_07901221.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
 gi|315276766|gb|EFU40109.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
          Length = 316

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 135/231 (58%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  F+++   +G K I+S+ +LV F+KS +K+ ++G ++  +L      +    +  P 
Sbjct: 82  LKMKFEKLDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREGLSSLSTMGPD 141

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +I +        +   I + +  L VLD  +  + +   ++MSKQ+IKDE K+  G+P+I
Sbjct: 142 AIFHFVADITMSLGFKIAIGLIILAVLDYMYQRYDYEKNIRMSKQDIKDEYKKMEGDPLI 201

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + +   R     +MM+    A +IITNPTH+A+A++Y  +  +AP ++AKGQ+ +A +
Sbjct: 202 KGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSMMEAPQIIAKGQDFMALR 261

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA EH I   E   LAR+L+++  I  +IP   ++AVA+++  +Y  K
Sbjct: 262 IKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 312


>gi|269967242|ref|ZP_06181306.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
 gi|262284522|gb|ACY41059.1| VscU [Vibrio alginolyticus]
 gi|269828098|gb|EEZ82368.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
          Length = 349

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 177/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTEQPTAKKLRDARQKGQVAKSQEI-VSSALILALIIVLFAFADYYMSHISALILLPSK 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   +V +   ++   + L+ P +L+  +  I S + Q   + +   VKP  K
Sbjct: 63  LAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N   ++   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPTIT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  IA 
Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAIAK 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +P+ ++  LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVL 338


>gi|330828812|ref|YP_004391764.1| flagellar biosynthetic protein FlhB [Aeromonas veronii B565]
 gi|328803948|gb|AEB49147.1| Flagellar biosynthetic protein FlhB [Aeromonas veronii B565]
          Length = 376

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 183/358 (51%), Gaps = 18/358 (5%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D    +TE P+ K+++ A  +G    S+E    +S+L   ++ L      + +    +  
Sbjct: 3   DTDQERTEQPTGKRLQQAREKGQIARSKELGT-ASVLLSAVFGLLMLKGSLATAMIKVVT 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN--- 121
           +  +  + +  D + ++ ++  L      LV+P  LLF +  I +++   + +  +N   
Sbjct: 62  MGFTLDREQAFDPNAMIAMVPAL---LGELVLPLGLLFALVAIAAFIGNTL-MGGMNFST 117

Query: 122 -HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179
             + P   ++S   G+KR++ + +L+  +KS  K++ +       L+  +  +L+  +  
Sbjct: 118 EAMMPKMSKLSPLSGLKRMFGVQSLIELVKSIAKVVFITLFAWWMLSSQFNHLLNLSMEG 177

Query: 180 NPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQS 236
            P  I+     F    + ++I+L  A L ++ I   + QW    +LKM+KQE+KDE K S
Sbjct: 178 FPGGIIDALELF----LWMLIILCCALLPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDS 233

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKG 295
            G P +K + + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG
Sbjct: 234 EGKPEVKGKIRQLQMQMAMRRMMGDVPKADVVITNPTHYSVALKYDAGKPGAAPKVVAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + IA K+R+IA E+ IPI   P+L R+++    +   IP   + AVAQ++  ++  K
Sbjct: 294 TDEIAMKIREIAREYEIPIMPSPALTRAIYHSTELGHEIPEGLFAAVAQVLAYVFQLK 351


>gi|331671779|ref|ZP_08372575.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
 gi|331070768|gb|EGI42127.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
          Length = 379

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     + I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI+R++S  +L    K  VK  +V  ++ +SL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLMMLWVSLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +   L  + A P  +  +     + +V +  +++ +F A   +LD+  +   +   LKM+
Sbjct: 166 FAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+ 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E  + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|266621912|ref|ZP_06114847.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
 gi|288866385|gb|EFC98683.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
          Length = 355

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 178/363 (49%), Gaps = 25/363 (6%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF----FFSPGIY---SV 58
           A D KTE  + K+ +D   +GN   S +      I  C + +LF      +P IY     
Sbjct: 4   AADEKTEKATPKRRQDERKKGNVFQSSDV-----IAVCSLLVLFNSLNALAPMIYRTLKA 58

Query: 59  TSDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           + +L    A++T+    ED+   +     L   A+   +P L + +   + +   Q    
Sbjct: 59  SMELFFSYAASTEPLTAEDLPDKLLKAMFLFGQAA---LPLLFIGVAVAVVTTFFQTRLS 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            + + +K    R+SL +G KR++SI ++V  +K+ +KI ++  +I   +          +
Sbjct: 116 FSADVMKFKMDRISLLKGFKRMFSIRSVVELLKAMIKITILAWVIYSYIKGRIHEFARLM 175

Query: 178 SANPHSILYHAFFTVRKVLIMI---LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                +   +   T   ++  +    +F+A    L   W Y +    L+MSKQEIKDE K
Sbjct: 176 DGTVQAAFVYVGDTAVSLVNTVGAAFIFLAAFDYLYQWWEYEK---NLRMSKQEIKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           Q+ G+P IK R +   R     +MM+   +A +II NPTH+A+AL Y    N APV++AK
Sbjct: 233 QTEGDPQIKGRIREKQRQMASMRMMQNVPKADVIIRNPTHFAVALGYDSNTNRAPVVLAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYH 351
           G + +A K+ ++   + + I E+  LAR L+  V ++  IP  FY+ VA++   +YK+  
Sbjct: 293 GADHLALKIVEVGEANGVYIMEDKPLARGLYASVEVDMEIPEEFYQTVAKVLAFVYKLKK 352

Query: 352 KKI 354
           K I
Sbjct: 353 KDI 355


>gi|327254528|gb|EGE66144.1| flhB HrpN YscU SpaS family protein [Escherichia coli STEC_7v]
          Length = 379

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 183/367 (49%), Gaps = 37/367 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F      V     
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62

Query: 64  VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110
            +   A +    D+       H++    F+LT L + A+ L+   +PG  LF+       
Sbjct: 63  SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                       + P F ++S  +GI R++S  +L    K   K ++V  ++ ISL  N+
Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNF 166

Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
              L  + A P  +  +     + +V +  +++ +F A   ++D+  +   +   LKM+K
Sbjct: 167 AAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+  
Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++
Sbjct: 283 AAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342

Query: 347 YKIYHKK 353
             +   K
Sbjct: 343 TYVLQMK 349


>gi|260431743|ref|ZP_05785714.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415571|gb|EEX08830.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 361

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 183/362 (50%), Gaps = 31/362 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57
           MS  D   +K+   + +K++ A  +G    S + S  ++     I LL   + G YS   
Sbjct: 1   MSGQDDDSDKSFEATPQKLQKAREKGEVVKSNDLSAVAAYAGLTIALL---AAGQYSAVH 57

Query: 58  VTSDLHVLL---ASATQRKLEDISH--IVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYL 111
           + + L VL+    S +   +E  S   ++ LL  ++LSA  L+ +P +++ +     + L
Sbjct: 58  LGTALMVLVDQSPSLSSLLVEGASTGPVLGLLKAVALSAGTLLAVPTVVVLL-----NLL 112

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
            QR  V   + +KP   R+S+    K  +    L  F+KSFVK+++    + + L  N  
Sbjct: 113 AQRAIVFAPSKLKPKPSRISIPSNAKNKFGRGGLFEFLKSFVKLVIYCACLALFLQANLS 172

Query: 172 TMLDFISANPH-------SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
            +L   +A P        ++L+H  F    +++ I L I    V+D  W Y +   K +M
Sbjct: 173 QILSAAAAPPRASILLMMNLLFHFLF----IVVAITLAIG---VIDYLWQYSEHMRKNRM 225

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           S++E++DE K S G+P +K  ++  A+     +MM    +A ++I NPTHYA+ L++ +T
Sbjct: 226 SRKELQDETKDSEGDPHVKQHRRQRAQEIATSQMMSDVPKADVVIVNPTHYAVVLKWDRT 285

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
              APV VAKG + +A  +R IA E  +P+  +P  AR+L   V I   IP  +Y+ VA 
Sbjct: 286 PGTAPVCVAKGVDEVAATIRSIAIEAGVPLHSDPPTARALHATVEIGQEIPEDYYRPVAA 345

Query: 345 LI 346
            I
Sbjct: 346 AI 347


>gi|89056679|ref|YP_512130.1| flagellar biosynthesis protein FlhB [Jannaschia sp. CCS1]
 gi|88866228|gb|ABD57105.1| flagellar biosynthetic protein FlhB [Jannaschia sp. CCS1]
          Length = 362

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 28/361 (7%)

Query: 1   MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS++D +P +K    + KK+EDA  +G   I R   L ++++    Y  F  S  I +  
Sbjct: 1   MSDDDTSPGDKPFDATPKKLEDARKKGE--IVRSQDLNTAVM----YAGFLLSGAILAPW 54

Query: 60  SDLHVLLASATQRKLE--------------DISHIVFLLTHLSLSASRLVIPGLLLFMMF 105
             L   L   TQ  L               D   I  L   L  SA+ +++P  LL +  
Sbjct: 55  --LVQNLGQLTQTTLGQAEVIAPLMLGPGGDGPAIGLLSGSLIASAAIVLVPAGLLLI-- 110

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
              S L QR  +   + + P   R+S     K+ Y    L  F KS VK+ LV   + I 
Sbjct: 111 ---SLLAQRALLFTPSKLMPKLNRLSPISNAKQKYGSQGLFQFAKSAVKLALVSIFLAIY 167

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           L     T+L  +      +L          L+++      + ++D  W + Q   + +M+
Sbjct: 168 LWARAETILASLYGTAGQLLELLGRLSLDFLMVVAGMTGIIGIIDWFWEWSQLQLRNRMT 227

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           +QE+ DE K + G+P IK ++++  +    ++M+     A +++ NPTHYA+AL++ +  
Sbjct: 228 RQEVMDESKSAEGDPHIKQQRRARGQGIAMNQMLGDVPNADVVVVNPTHYAVALKWDRAG 287

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
              P+ VAKG + +A+++R+ A E  +PIF +P  AR+L   + + +AI P  Y+AVA  
Sbjct: 288 GGVPICVAKGVDDVARRIREAASEAAVPIFSDPPTARALHASIEVGAAIQPDQYRAVAAA 347

Query: 346 I 346
           I
Sbjct: 348 I 348


>gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 613

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 183/340 (53%), Gaps = 2/340 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + KK  D+  +G    S++ S+  ++ AC + +   +   + +    L   LA
Sbjct: 265 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 324

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             + +   +++   F+   L L  + + +P  L  M+ G+ + +IQ   ++    +KPS 
Sbjct: 325 LPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 383

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++  +G+K ++S  +LV  +K+ V + ++  +    +  NY  +++  +    S+   
Sbjct: 384 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 443

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  + + I L +  +   D    +     +LKM+KQEIKDE KQ+ G+P +K + K
Sbjct: 444 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMRKI 306
              R     +MM++ S AT++ITNPTH A+AL+Y +  N +AP +VAKG + +A +++ I
Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A ++++PI E   LAR ++ +V I+  IP   Y+ VA+++
Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVL 603


>gi|167626135|ref|YP_001676429.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
           HAW-EB4]
 gi|167356157|gb|ABZ78770.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
           HAW-EB4]
          Length = 377

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 179/346 (51%), Gaps = 1/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+  +KTE  + +K++ A  +G  P S++ +  + I+ C + LL   +  I +  +
Sbjct: 1   MSNKDSGQSKTEKATPQKLKKAREQGQVPRSKDLASSALIIGCSL-LLTTTADWIAAKVA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +  S T+ +L++   +   L +  L    ++ P  L+  +  + +  +   P+ N 
Sbjct: 60  AMTRINMSFTKAQLDEPGMMARHLAYSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N+    + R+    G+ R+ S+ +LV  +KS +KI+L+  I+ + L +N+  ++      
Sbjct: 120 NNANFKYSRIDPIAGLGRMASVKSLVELVKSILKIVLLIGIMLLFLQKNFQALMAVSQLP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   +  + L +  +T +D+ + Y   + +L+MS QE+KDE KQ  G P
Sbjct: 180 IDEAVTRGIEMLSLAMFYMGLGLLVITFIDVPYQYWHHHKELRMSLQEVKDEYKQQDGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + +   R +   +  +A +++ NP+HYA+AL+Y   + DAP ++AKG + +A
Sbjct: 240 EVKAKIRQMQQRISRSRADVSVPKADVLLVNPSHYAVALKYDMNKADAPYVLAKGTDELA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             MR IA  +++ + E P L R+++    +   IP   + A+A ++
Sbjct: 300 LYMRDIAKRNDVEVLELPPLTRAIYYSTQVEQQIPSGLFIAIAHVL 345


>gi|300936100|ref|ZP_07151041.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           21-1]
 gi|300458749|gb|EFK22242.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           21-1]
          Length = 379

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 183/367 (49%), Gaps = 37/367 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F      V     
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62

Query: 64  VLLASATQRKLEDI------SHIV----FLLTHLSLSASRLV---IPGLLLFMMFGIGSY 110
            +   A +    D+       H++    F+LT L + A+ L+   +PG  LF+       
Sbjct: 63  SVHQYAQEINNPDVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP------ 116

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                       + P F ++S  +GI R++S  +L    K   K ++V  ++ ISL  N+
Sbjct: 117 ----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNF 166

Query: 171 FTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
              L  + A P  +  +     + +V +  +++ +F A   ++D+  +   +   LKM+K
Sbjct: 167 AAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKMTK 222

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+  
Sbjct: 223 QELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRA 282

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++
Sbjct: 283 AAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVL 342

Query: 347 YKIYHKK 353
             +   K
Sbjct: 343 TYVLQMK 349


>gi|149188098|ref|ZP_01866393.1| flagellar biosynthesis protein B [Vibrio shilonii AK1]
 gi|148838086|gb|EDL55028.1| flagellar biosynthesis protein B [Vibrio shilonii AK1]
          Length = 376

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 180/362 (49%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  + +TE  + ++++ A  +G    S+E +  S ++   + L+ F      ++  
Sbjct: 1   MAESDGQE-RTEDATPQRLKQAREKGQVARSKELASVSVLIVGALSLMMFGEGLARALFG 59

Query: 61  DLHVLLASATQR-----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
            +  L   + +      KL D++        L L     V+    L    G+G       
Sbjct: 60  SMARLFNLSREEIYDSTKLFDVALGALSSLLLPLLLILFVLFIAALIGAAGVGGI----- 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYF 171
              +     P   +++   G+KR+  + + V  +KS +K+ LV      ++  S  + + 
Sbjct: 115 -SFSAEAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVTLVAGMAFYLVNASRADLFQ 173

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             ++    N    ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KD
Sbjct: 174 LSMEVFPQN----IFHALDILLNFILLISATLLIVVAIDIPFQIWQHANQLKMTKQEVKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G P +K R + + R   + +MM    +A +IITNP H+++ALRY Q ++ APV+
Sbjct: 230 EFKDTEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIITNPEHFSVALRYKQGQDKAPVV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + +A K+R++A EH+I +   P LARSL+    +   IP   + AVAQ++  +Y 
Sbjct: 290 VAKGIDHMALKIREVAREHSIYVIPSPPLARSLYHTTELEQEIPDGLFAAVAQILAYVYQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|261252335|ref|ZP_05944908.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891]
 gi|260935726|gb|EEX91715.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891]
          Length = 376

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 185/362 (51%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYS 57
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F    +  +++
Sbjct: 1   MAESDG-QERTEDATPRRLQQAREKGQVARSKELASVSVLVVGSIALMWFGESLARALFT 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V S L  L       + E   H+      +    S ++   L+L  +F         +  
Sbjct: 60  VMSRLFSL------SREEIFDHVKLFDIVVGSIGSLILPLLLILVTLFVAAVVGAAGVGG 113

Query: 118 --LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFT 172
              ++    P   +++   G+KR+  + + V  +KS +K+ LV  +   +  +  E+ F 
Sbjct: 114 VSFSVEAAMPKASKMNPLSGLKRMVGMQSWVELIKSILKVALVSGMAFYLISAAREDLFQ 173

Query: 173 M-LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           + +D    N    ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KD
Sbjct: 174 LSMDVYPQN----IFHALDILLNFVLLISCTLLIVAAIDIPFQIWQHADQLKMTKQEVKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K++ G P +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++
Sbjct: 230 EYKETEGKPEVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDTDKAPIV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           VAKG + +A K+R++A EH+I +   P LAR+L+    +   IP   + AVAQ++  ++ 
Sbjct: 290 VAKGTDHMALKIREVAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|224826341|ref|ZP_03699443.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002]
 gi|224601442|gb|EEG07623.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002]
          Length = 388

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 180/366 (49%), Gaps = 32/366 (8%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TEA + ++++ A  EGN P SRE S F+  +   + LL      + +    L 
Sbjct: 3   EDSDLERTEAATGRRLQQAREEGNIPRSRELSTFAVTMTG-VALLMAMGERLGNFMLQL- 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM--FGIGSYLIQRIPVL--- 118
                   R+L    H +   T   L   +  +   LL +M  FG  + +    P+L   
Sbjct: 61  -------MRRLFTFDHDMVQHTDPVLLRFKESLTDTLLQLMPLFGGLALVAVAAPLLVGG 113

Query: 119 ---NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                  ++P   +++   GI+R++S++ L   +K+ +K +++G + T  +      ++ 
Sbjct: 114 WNLTFKGIEPKLSKLNPAHGIQRMFSLSALTEALKAILKSVVIGGVATWVIWNERAELIG 173

Query: 176 FISANPHSIL-------YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
            I+    + L       +H F  V   ++++++      +    W+YH+   +L+M+K+E
Sbjct: 174 LIAMPLETALGKMMQLTFHTFLLVVGAMLLLVVVDVPFQI----WNYHK---QLRMTKEE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +K E K+  G+P +K R + + R   + +MM+    A +I+TNPTHYA+AL+Y +    A
Sbjct: 227 VKQEYKEQEGSPEVKGRIRQLQRQAAQRRMMQEIPSANVIVTNPTHYAVALKYTEGMR-A 285

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P ++AKG+  +A+K+     EH + +   PS AR+L+    +   +P   Y A AQ++  
Sbjct: 286 PQVIAKGRLKLAEKIIDTGREHRVTVMRVPSFARALYFHSELGEEVPSRLYGAAAQILAY 345

Query: 349 IYHKKI 354
           +Y  K+
Sbjct: 346 VYQLKL 351


>gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3
           str. Alaska E43]
          Length = 610

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 183/340 (53%), Gaps = 2/340 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + KK  D+  +G    S++ S+  ++ AC + +   +   + +    L   LA
Sbjct: 262 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 321

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             + +   +++   F+   L L  + + +P  L  M+ G+ + +IQ   ++    +KPS 
Sbjct: 322 FPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 380

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++  +G+K ++S  +LV  +K+ V + ++  +    +  NY  +++  +    S+   
Sbjct: 381 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 440

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  + + I L +  +   D    +     +LKM+KQEIKDE KQ+ G+P +K + K
Sbjct: 441 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 500

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMRKI 306
              R     +MM++ S AT++ITNPTH A+AL+Y +  N +AP +VAKG + +A +++ I
Sbjct: 501 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 560

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A ++++PI E   LAR ++ +V I+  IP   Y+ VA+++
Sbjct: 561 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVL 600


>gi|288573010|ref|ZP_06391367.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568751|gb|EFC90308.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 364

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 180/350 (51%), Gaps = 14/350 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS---PGIYSVTSDLHV 64
           + KTE  + +K      EG    S++    + I+A LI ++ F       I S   +   
Sbjct: 15  EEKTEPATPRKRRKEREEGRVAKSQDLGASAVIIAGLIAVILFGGWIFDVILSFIRECLF 74

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +   T  +    +     LT  S+SA  L ++P ++   +      + Q   V+    +
Sbjct: 75  FIGDGTLGR----TGWFHSLTMRSISAYGLAIVPMVVGCFLAAFFVSVAQVGFVMTSKPL 130

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P   R +   G+K++ S+ +LV  +K  +K +++  ++  +L  +   + D + A  + 
Sbjct: 131 IPKMNRFNPISGLKKVISLRSLVEMVKGILKALILAIVLYSALRGD---LADMVMAVRYP 187

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDI-GWSYHQWY--SKLKMSKQEIKDEIKQSYGNP 240
           I       + ++ ++ +     L V+ I  WSY +W     +KMSKQEIK+E KQ  G+P
Sbjct: 188 IGPAVSLLLWRIWLLCVKMTFLLLVIAIFDWSYQKWEFEKNIKMSKQEIKEEYKQMEGDP 247

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R   + +MM    +A ++ITNPT  A+AL+Y + + DAPV++AKG+ L+A
Sbjct: 248 QIKQKIRQKQREMAKQRMMADVPQADVVITNPTTLAIALQYDREKMDAPVVLAKGKGLLA 307

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +++R+IA E+++P+ E   LA +L   V +  +IP   YK+VA+++  +Y
Sbjct: 308 RRIREIAEENDVPVVENKPLAWALHDSVEVGESIPETLYKSVAEVLAFVY 357


>gi|261837998|gb|ACX97764.1| flagellar biosynthesis and export protein [Helicobacter pylori 51]
          Length = 358

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 177/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-------SPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF       S     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L + ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILTILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|289663762|ref|ZP_06485343.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668184|ref|ZP_06489259.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 357

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 168/345 (48%), Gaps = 21/345 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK++DA  +G+ PIS + +  + +L  ++ +    S  +  + + + + + 
Sbjct: 3   DEKTEKPTEKKLQDARRDGDIPISPDVTAAAVLLGAMLVMKLAGSYFVEHMRALMQIGM- 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-------NL 120
                   D +      T ++ +  R+ I GLLL + F +   L   I V        +L
Sbjct: 62  --------DFTENTRDATAMNRALGRIGIEGLLLMLPFLVACLLGGLIGVFLQTGMNASL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  ++   G+K+++S+ + +N +K  VK IL+G ++ + +      ++      
Sbjct: 114 KPVTPKFDSLNPVNGVKKLFSLRSFINLLKLVVKAILIGVVLWLGIRALMPMIIGLAYEP 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238
              I   A+ T+  +  + +L    +   D  WS   W      +MSK E K E K+S G
Sbjct: 174 TPDIAQIAWRTLGTLCALAVLVFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREHKESEG 231

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K ++K  A+  I     E  S+A +++ NPTHYA+AL Y       P +VAKG + 
Sbjct: 232 DPEVKGKRKEFAKELIFGDPRERVSKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDD 291

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            A ++R  A+   IPI   P LAR+L+  V +  A+P   ++ VA
Sbjct: 292 GALELRAFAHNQGIPIVANPPLARALY-VVELGDAVPESLFETVA 335


>gi|261209856|ref|ZP_05924157.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341]
 gi|262404466|ref|ZP_06081021.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586]
 gi|260841042|gb|EEX67567.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341]
 gi|262349498|gb|EEY98636.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586]
          Length = 330

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180
           P   +++   G KR++ + + V  +KS +K++LV  +    I  S  + +   LD    N
Sbjct: 77  PKLSKMNPLSGFKRMFGMQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQN 136

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K + G P
Sbjct: 137 ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKP 192

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 193 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 252

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 253 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 305


>gi|188997532|ref|YP_001931783.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932599|gb|ACD67229.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 350

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 187/357 (52%), Gaps = 29/357 (8%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF------FSPGIYSVTSDLH 63
           KTE  + K+ + A  EG    S + S+ +S+    I L+F+      +  G +  T    
Sbjct: 7   KTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLLGYFKYTFSNP 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           + L S   R        +F+   L + A  ++   L+LF++  I S ++Q   +  L  +
Sbjct: 67  LYLISENGR--------MFIWFTLKILAILILPVILILFVV-AIASNVMQFGFLFTLKPL 117

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT----MLDFISA 179
            P   ++++  GIKRI+S+  L   +K+  K+       T++L  +YF     + DF+  
Sbjct: 118 TPKLDKLNVISGIKRIFSLTVLFELIKNLAKL-------TVALFLSYFLVKYLLNDFLVY 170

Query: 180 NPHSILYHAFFTVRKVLIMILLFI---ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              SI    +   + ++I+++ F      + + D  +  +++   LKM+K E+K+E K  
Sbjct: 171 MTGSINNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSY 230

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GN ++K   +   R     +M+    +A ++ITNP HYA+AL+Y + +  AP ++AKGQ
Sbjct: 231 EGNLLVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVLAKGQ 290

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +LIA+K++++A EH++ I E+P LAR+L+    I   IP   Y+AVA+++ +IY  K
Sbjct: 291 DLIAQKIKEVAKEHDVKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKFK 347


>gi|239907023|ref|YP_002953764.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1]
 gi|239796889|dbj|BAH75878.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1]
          Length = 357

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 183/352 (51%), Gaps = 21/352 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + K+   A  +G+ P S+E    + ++A L  + F       ++   L  +  +
Sbjct: 6   SKTEKATPKRESKAREKGSVPRSQELPKLTVLMAGLFTVRFTLG----NINEQLQEVFRT 61

Query: 69  ATQRKLE------DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
               +L+      D++ +++     SLSA +L I  L L ++  + +++ QR+ V  +  
Sbjct: 62  FLGGRLDFTATTDDVAALMW-----SLSA-KLAIMLLPLLLVMAVVAFVTQRLQVGEVWR 115

Query: 123 VK---PSFKR-VSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            K   P F   V+   G++R+  S   LVN  K       +  +  + L + +   L   
Sbjct: 116 PKIFEPDFSNIVNPMRGLQRLLISAQTLVNLAKQTAMAFAISLVPYLILRKRFNEFLPLF 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  +I          +++  LL +  + +LD+ ++   +   LKM+K E+KDE KQS+
Sbjct: 176 YQSVDNIALFLLDNGFDMVLYTLLPMFVIAILDVWYTRWDYAENLKMTKDEVKDEHKQSF 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K +QK      ++ +M++   +A ++ITNPTH A ALRY   E+ AP+L+AKG +
Sbjct: 236 GDPHVKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHIACALRYNPLESPAPMLLAKGAD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +A+K++ IA EH +PI E   LA++L+K V I   IP   Y+AVA ++ ++
Sbjct: 296 FMAEKIKDIAKEHKVPIRENKPLAQALYKNVEIGQVIPEDLYQAVASILAQL 347


>gi|313620092|gb|EFR91598.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378]
          Length = 260

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 140/248 (56%)

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
           +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V  +K+ + I L+
Sbjct: 2   MVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLL 61

Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
             +  I   ++  T++ +   N    L   F   +   + + L IA + +LD  +  + +
Sbjct: 62  SYVAYIGFRDHLDTLISYTGQNWLYSLSQIFALFKNEFLALFLVIAVIGLLDFFYQRYDY 121

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
              L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPTH ++ 
Sbjct: 122 KKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVV 181

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           +RY +T++ AP L+ KG++ +A  +R++A    +P+     LARS++     +  I    
Sbjct: 182 MRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDL 241

Query: 339 YKAVAQLI 346
           YK V +++
Sbjct: 242 YKDVIEVM 249


>gi|323181524|gb|EFZ66944.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1357]
          Length = 379

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     E I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI+R++S  +L    K  VK ++V  ++ +SL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +   L  + A P  +  +     +  V +  +++ +F A   ++D+  +   +   LKM+
Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  + 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|306813328|ref|ZP_07447521.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
 gi|305854091|gb|EFM54530.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
          Length = 379

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 185/369 (50%), Gaps = 41/369 (11%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLI--------YLLF----FF 51
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  +        Y  F    F 
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFI 62

Query: 52  SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIG 108
           S   Y+   +   ++    +  L  +    F+LT L + A+ L+   +PG  LF+     
Sbjct: 63  SVHQYAQEINNPQVIGQFLRHHLLILGK--FILTLLPMPAAALLSSLVPGGWLFLP---- 116

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                         + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  
Sbjct: 117 ------------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRN 164

Query: 169 NYFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           N+   L  + A P  +  +     + +V +  +++ +F A   ++D+  +   +   LKM
Sbjct: 165 NFAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LIDVPLAKALFTKGLKM 220

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+
Sbjct: 221 TKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQS 280

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
              AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A 
Sbjct: 281 RAAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAH 340

Query: 345 LIYKIYHKK 353
           ++  +   K
Sbjct: 341 VLTYVLQMK 349


>gi|254228241|ref|ZP_04921670.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25]
 gi|262394130|ref|YP_003285984.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25]
 gi|151939314|gb|EDN58143.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25]
 gi|262337724|gb|ACY51519.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25]
          Length = 351

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 177/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTEQPTAKKLRDARQKGQVAKSQEI-VSSALILALIIVLFAFADYYMSHISALILLPSK 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +D   +V +   ++   + L+ P +L+  +  I S + Q   + +   VKP  K
Sbjct: 63  LAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N   ++   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWLTLRGNINALMQIPTCGLECVPTIT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  IA 
Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMIAIAK 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +P+ ++  LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVL 338


>gi|258626191|ref|ZP_05721039.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603]
 gi|258581546|gb|EEW06447.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603]
          Length = 255

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISAN 180
           P   +++   G KR++ + + V  +KS +K++LV  +    I  S  + +   LD    N
Sbjct: 2   PKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQN 61

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K + G P
Sbjct: 62  ----IFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKP 117

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 118 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 177

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 178 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 230


>gi|229160731|ref|ZP_04288723.1| Flagellar biosynthetic protein [Bacillus cereus R309803]
 gi|228622746|gb|EEK79580.1| Flagellar biosynthetic protein [Bacillus cereus R309803]
          Length = 348

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 181/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMLENRPLARSLYYQVEEDEAIPEDLYVAVIEVM 337


>gi|308062091|gb|ADO03979.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Cuz20]
          Length = 358

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 181/355 (50%), Gaps = 37/355 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE PS+KKI+ A  EGN P S E   F  +LA LI +  FF   I+ V       
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLISIFVFF---IWWVDG----- 53

Query: 66  LASATQRKLEDIS------HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            +   +  ++D S       +  L   L+     L++P L++ ++    S ++Q   +  
Sbjct: 54  FSEMYRHAVKDFSLDFSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFA 113

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S 
Sbjct: 114 PKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSL 162

Query: 180 NPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
               + + A   ++  L+             L     L  +D+     Q+ + LKM+KQE
Sbjct: 163 FLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFILAFIDLMIKRRQYTNSLKMTKQE 222

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  
Sbjct: 223 VKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPV 281

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 282 PVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|260853445|ref|YP_003227336.1| putative lateral flagellar export pore protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257752094|dbj|BAI23596.1| predicted lateral flagellar export pore protein [Escherichia coli
           O26:H11 str. 11368]
 gi|323158016|gb|EFZ44117.1| flhB HrpN YscU SpaS family protein [Escherichia coli EPECa14]
          Length = 379

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 183/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     E I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI+R++S  +L    K  VK ++V  ++ +SL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIERLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           + + L  + A P  +  +     +  V +  +++ +F A   ++D+  +   +   LKM+
Sbjct: 166 FASFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  + 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|83647785|ref|YP_436220.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC
           2396]
 gi|83635828|gb|ABC31795.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC
           2396]
          Length = 351

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 177/351 (50%), Gaps = 27/351 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLL 66
           D KTE P+ KK+ DA  +G    S++  + S+   C ++LL   +   Y S  S L  L 
Sbjct: 3   DEKTEKPTPKKLRDARKKGQVAHSKD--VVSTATICAMFLLLLATSDTYLSHLSILIELP 60

Query: 67  ASATQRKLED-----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           A    R   +     + ++++ L +L+L    +V+   +L     +G+       +  + 
Sbjct: 61  AQYMDRPFLEALPMVVDNVIYELIYLTLMPVGVVMASAILANFLQVGA-------LFAVE 113

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +KP  K+++  EG K+I+ + N + F+KS +K+ ++  ++ + + +N        SA  
Sbjct: 114 SLKPDLKKLNPVEGFKKIFCVKNFIEFIKSLIKVGVLSYLVYMLIKDNLND-----SARL 168

Query: 182 HSILYHAF----FTVRKVLIM--ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           H            T+ K LI+   + FIA L   D      Q+  + KMSK E+K E KQ
Sbjct: 169 HYCEVECIPDFVGTLLKQLILYSAITFIA-LAAADFFIQKQQFIKQQKMSKDEVKREYKQ 227

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P IK ++K I R  +   +     + + I+TNPTH A+ + Y +   D P ++ KG
Sbjct: 228 MEGSPEIKGKRKQIHREMMNTSIPAQVKKCSAIVTNPTHLAVGIYYEKGVEDVPKVMVKG 287

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            + +AK +RKIA E  IP+ E   LAR L+K+  +N  +PP  ++AVA ++
Sbjct: 288 ADQMAKVIRKIAEEEGIPMMENVPLARGLWKRAQVNDYVPPDLFEAVAAVL 338


>gi|317153078|ref|YP_004121126.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2]
 gi|316943329|gb|ADU62380.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2]
          Length = 353

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 183/354 (51%), Gaps = 25/354 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGI----YSVTS 60
           +KTE  ++K+ +   NEGN P S E +    L   +L     + F+    I    ++   
Sbjct: 6   SKTEKATTKRRKRTRNEGNVPKSSELTKAIVLLMGVLTLRSLIGFYQDQFIEIYEWTFRE 65

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +H  L  +T       ++ +F+         +L I  L L  +    ++L  R+ V  L
Sbjct: 66  GIHTKLDPST-------TYALFVW-----GVKKLAIIVLPLLFVLAFTAWLTLRLQVGGL 113

Query: 121 ---NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                +KP F ++ ++  G+KR+  S    V   +S ++ + VG    I + +    +L 
Sbjct: 114 WTTKPMKPKFAKMFNIVAGLKRLLISPQAFVRLGRSILQALAVGIAPYIVIKQELPNLLP 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
              A+ H I+ +      K+    L+ +  + + D+ +S  ++   +KM+K EIKDE +Q
Sbjct: 174 LFHASTHGIIAYILGVGYKMACYALVPMLLIAIADLWYSRWKYEEGIKMTKDEIKDERRQ 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P IK +Q+      +  +M +   +A ++ITNPTH+A+AL+Y      AP+++AKG
Sbjct: 234 AEGDPHIKRKQQQKMLQMMASRMFKDIPKADVVITNPTHFAVALQYDALVAPAPLVLAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            N +A++++++A E++IPI   P LAR+L+KQV I   IP   ++AVA ++ K+
Sbjct: 294 VNRVAERIKEVARENSIPIEVNPPLARALYKQVEIGETIPEEMFQAVAAILAKL 347


>gi|157959922|ref|YP_001499956.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
           700345]
 gi|157844922|gb|ABV85421.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
           700345]
          Length = 376

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 25/354 (7%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-IYSVTSDLH 63
           D   +KTE  + KK++ A  +G  P S++ +  + ++ C   LL   S G I +  + L 
Sbjct: 4   DTGQSKTEDATPKKLKQAREQGQVPRSKDFTSAALVMGC--ALLLTTSAGEIGARVAQLA 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP---VLNL 120
                 T+ +L++   +   L    L    ++ P   LF++  + + +   +P   + N 
Sbjct: 62  RTNMQFTKAQLDEPGMMTRHLGQALLEILYILAP---LFILVALIAMIAGAMPGGWIFNF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF---- 176
            +    + R+    G+ R+ SI +L   +KS +KI+L+G I+ + L +N  T+L F    
Sbjct: 119 GNAGFKYSRIDPIAGLGRMVSIKSLAELIKSVLKIVLLGGIMLVFLDKNLQTLLTFSQLP 178

Query: 177 ----ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
               I+     +    F+     L + LLFIA    +D+ + Y Q +++LKMS QE+KDE
Sbjct: 179 IDEAITRVIDMLSLGVFY-----LGLGLLFIA---CIDLPYQYWQHHNELKMSLQEVKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            KQ  G P IK + + + +   R +   +   A +++ NPTHYA+AL+Y   + DAP ++
Sbjct: 231 HKQQEGKPEIKAKIRQMQQRISRSRADVSIPNADVLLVNPTHYAVALKYDANKADAPYVL 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            KG + +A  MR++A  H + I E P L R+++    I   IP   + A+A ++
Sbjct: 291 TKGTDELALYMREVAKRHGVEILELPPLTRAIYYSTNIEQQIPASLFVAIAHVL 344


>gi|83646009|ref|YP_434444.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC
           2396]
 gi|83634052|gb|ABC30019.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC
           2396]
          Length = 345

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 181/350 (51%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL-- 66
            KTE P+ KK+ DA  +G    S+E  L S+ +   +Y L F S   YS+   L  L+  
Sbjct: 3   EKTEKPTPKKLLDARKKGQVAHSKE--LVSTAMMIAMYGLLFASG--YSLVEALQSLIDL 58

Query: 67  -----ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
                       L+ + + VF     SL    +++P +LL ++  + S +    P+  + 
Sbjct: 59  PARFYGQPFGEALQAVLNGVF---EKSLD---ILLPFILLVIVTAVVSNVGHVGPLFAME 112

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            VK   K++   EG+K+++S+ +L+  +KS VKI+ +  +I   +T N    L+ I   P
Sbjct: 113 SVKFDLKKIDPVEGVKKLFSVRSLMELLKSIVKILFLSILIYWVITAN----LNDIRKLP 168

Query: 182 HS-----ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           H      + +     ++  ++ ++ F+  + VLD  +  H+   +L+M+K E+K E K +
Sbjct: 169 HCGSDCIMPFIGHLMLQLAMVSMVAFV-IVAVLDFLYQKHEHQKQLRMTKDEVKREYKDA 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP +  ++K I R  +   M+    +A++I+TNPTH A+ + Y   +   P ++ K +
Sbjct: 228 EGNPEVIGQRKQIHREMLDGGMISQIKKASVIVTNPTHIAIGIYYDGDKRSLPTVILKAK 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           N  A++++KIA +  +PI E   LAR+L+ Q  + + IP    + VA+++
Sbjct: 288 NTTAQRVKKIAAKEGVPIMENIPLARALYAQAELENYIPSELIEPVAEVL 337


>gi|37525818|ref|NP_929162.1| flagellar biosynthesis protein FlhB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785247|emb|CAE14188.1| Flagellar biosynthetic protein FlhB [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 383

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE P+  K E A  EG    SRE    SSIL     L   +  G  S+T +L 
Sbjct: 3   EDSDLEKTEEPTPHKREKARKEGQIVRSRE---LSSILMLTSGLSLLWMSG-QSMTHELS 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +++          + +   +V  +  L   A   ++P     ++  + +  +    V + 
Sbjct: 59  LMVFEGFSFDHSMVSNDKQMVQQIGRLLQQAVLALLPVFAGLVLVALSAPALLGGLVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+++   G+KRI+S+N L    K+ +K   VG    + L  N+  ML  I+  
Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPAMLRLIAQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   +     +++  +  +   D+ +  +    KL+M++QEIKDE K+  G+P
Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +    AP ++AKG  +IA
Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALKYDEKAMSAPKILAKGAGIIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++++I  E+ IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIKEIGTENRIPLLEVPPLARALYRHGEIGGQIPATLYAAVAEVLAWVYQLK 351


>gi|156976193|ref|YP_001447099.1| flagellar biosynthesis pathway, component FlhB [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527787|gb|ABU72872.1| hypothetical protein VIBHAR_04964 [Vibrio harveyi ATCC BAA-1116]
          Length = 375

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 186/360 (51%), Gaps = 30/360 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58
           MSE  + D KTE  S +K++ A  EG  P ++E   F++ +  L   +FF+S    I+  
Sbjct: 1   MSEQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVAMFFYSQLNSIWES 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRI 115
            S +     + T+  LE+   +V    HL  S +    +++P   + ++   GS ++   
Sbjct: 57  MSGVFRYNMTLTKADLENPKQLV---EHLGQSLAVIIEMLLPLFTVIIIVAFGSSMVLGG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +    +V P   +++   GIKRI+S  ++V  +KS VK++++  I+   L +N+   L 
Sbjct: 114 WMFRPANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYL-DNHLQPLL 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226
            +   P   L   F      LIM +LF         +    VLDI +   +   +L+M+K
Sbjct: 173 GMQNLP---LSQGF-----SLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTK 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K + G P +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +
Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEHSLS 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           DAP +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344


>gi|114799674|ref|YP_759006.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739848|gb|ABI77973.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC
           15444]
          Length = 357

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 173/360 (48%), Gaps = 51/360 (14%)

Query: 1   MSENDAPDNKTE-APSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E D    + E   S +++ DA  +G+ P S+EA+ F+ IL  LI  L           
Sbjct: 1   MAEQDQDSGEKEFDASEQRLRDARKDGDVPQSKEANAFALILGILIAAL----------- 49

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY--------- 110
               +L A    +  +D S I++     + +A      G   +                 
Sbjct: 50  ----ILDAVVGPKLFDDFSRILYHGD--AFAADIFEGDGGATWAWIATTLLALSPLLLVM 103

Query: 111 --------LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VG 159
                   +IQ+    +   + P  K+++  + IK  Y    L +F+K  VK++    +G
Sbjct: 104 AALVLVALIIQQSIAFSAKKIMPDMKKINPVDNIKNKYGTKGLTDFLKDTVKMLFAAGLG 163

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA---TLTVLDI--GWS 214
           T+  I  T +Y+      +A+     Y   FT  + L +IL F A    L  LD+   W 
Sbjct: 164 TLFLIQFTRDYYGSSSVDTAD----FYQ--FTFNQTLRLILYFFAFQFVLAALDLPLQWR 217

Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274
            H    KL+M+++++K E+KQS G+P ++ +++  A    R +M++    AT+++ NPTH
Sbjct: 218 IHS--HKLRMTREDMKKEMKQSEGDPHMRQQRREKATKISRGQMLQNVKSATVVMVNPTH 275

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           YA+AL++      APV VAKG + +A K+R++A E+N+PI+ +P   RS++  V ++  I
Sbjct: 276 YAVALKWDPDSKLAPVCVAKGTDHLAMKIRELAIENNVPIYSDPPATRSIYSMVEVDQEI 335


>gi|256020206|ref|ZP_05434071.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
 gi|260866391|ref|YP_003232793.1| putative lateral flagellar export pore protein [Escherichia coli
           O111:H- str. 11128]
 gi|300817293|ref|ZP_07097511.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           107-1]
 gi|307315219|ref|ZP_07594798.1| type III secretion exporter [Escherichia coli W]
 gi|331666524|ref|ZP_08367398.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|332281368|ref|ZP_08393781.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|257762747|dbj|BAI34242.1| predicted lateral flagellar export pore protein [Escherichia coli
           O111:H- str. 11128]
 gi|300530269|gb|EFK51331.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           107-1]
 gi|306905400|gb|EFN35937.1| type III secretion exporter [Escherichia coli W]
 gi|315059466|gb|ADT73793.1| Lateral flagellar export/assembly protein [Escherichia coli W]
 gi|323178517|gb|EFZ64095.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1180]
 gi|323379976|gb|ADX52244.1| type III secretion exporter [Escherichia coli KO11]
 gi|331065748|gb|EGI37632.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|332103720|gb|EGJ07066.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 379

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     E I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           + + L  + A P  +  +     +  V +  +++ +F A   ++D+  +   +   LKM+
Sbjct: 166 FASFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  + 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|59889759|emb|CAH19114.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia
           coli]
 gi|284920023|emb|CBG33079.1| lateral flagellar export/assembly protein (FlhB-like) [Escherichia
           coli 042]
          Length = 379

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 182/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     + I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPDAIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI+R++S  +L    K  VK  +V  ++ +SL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +   L  + A P  +  +     + +V +  +++ +F A   +LD+  +   +   LKM+
Sbjct: 166 FAAFLG-LQALPFKLAMNDGLSLYASVMRNFVILFIFFA---LLDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQ++K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+ 
Sbjct: 222 KQKLKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E  + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|213420820|ref|ZP_03353886.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 221

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 117/197 (59%)

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
           LVG +    L  ++  M+  ++ +P   + +A   V    ++++L +  +   D+ +   
Sbjct: 3   LVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIF 62

Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
               KL+MS+Q+I+DE K+S G+P +K + + + R+  + +MME   +A +I+TNPTHY+
Sbjct: 63  SHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYS 122

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL+Y + +  AP +VAKG  LIA ++R+I  EH +P  E P LAR+L++   I   IP 
Sbjct: 123 VALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPG 182

Query: 337 VFYKAVAQLIYKIYHKK 353
             Y AVA+++  ++  K
Sbjct: 183 QLYAAVAEVLAWVWQLK 199


>gi|331005442|ref|ZP_08328821.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
 gi|330420718|gb|EGG95005.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
          Length = 361

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 189/347 (54%), Gaps = 5/347 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           MSE  + + +TE P+  K+++A + G    S E  SLF+  L+ +++L +     I +  
Sbjct: 1   MSEEQSQE-RTEKPTPFKLKEARDRGQVSKSTELNSLFA--LSSVLFLSYLVGEQIVNSQ 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L +     +   S  + L   +      +  P + L +   I S L+Q  P+L+
Sbjct: 58  LLLSKKLLTYDFHTIGSTSGALLLFEQIKDGLINIYWPLIFLIIFISIVSNLVQTGPILS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP  +R++  +G K+I+S   +  F+K+ +K+IL  T+  I++ E    +L+ I  
Sbjct: 118 FFPLKPDTQRLNPIKGFKKIFSKRMIYEFIKTTIKLILFATVAYITIDELLIVLLNLIDI 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P S         + + I +LL +    ++D  ++  ++  +++MS ++IKDE+K+  G+
Sbjct: 178 QPESYPLKLVTFAQSLGIKMLLVVLLAALVDFAYTRWEFIQQMQMSHKDIKDEVKKREGD 237

Query: 240 PIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           P+I+++++ + +  + + K +     A ++ITNPTH A+AL++ Q E  +P + AKG   
Sbjct: 238 PLIRSKRRELQKEAVEKSKSLSNVPDADVLITNPTHLAIALKFNQQEMTSPHVTAKGSGE 297

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           +A++M+ +A +H + I E   LARS++ +  INSAI   +Y+ +A++
Sbjct: 298 LAQQMKILARKHKVAIVENKPLARSMYNRTRINSAISEEWYQPIAKI 344


>gi|301646788|ref|ZP_07246642.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           146-1]
 gi|307136835|ref|ZP_07496191.1| flagellar biosynthesis protein FlhB [Escherichia coli H736]
 gi|331640691|ref|ZP_08341838.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
 gi|301075023|gb|EFK89829.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           146-1]
 gi|315616850|gb|EFU97467.1| flhB HrpN YscU SpaS family protein [Escherichia coli 3431]
 gi|331040065|gb|EGI12273.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
          Length = 379

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 181/368 (49%), Gaps = 39/368 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVRESF 61

Query: 64  VLLASATQR--KLEDISHIV---------FLLTHLSLSASRLV---IPGLLLFMMFGIGS 109
           + +    Q     E I   +         F+LT L + A+ L+   +PG  LF+      
Sbjct: 62  ISVHQYAQEINNPEVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLP----- 116

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                        + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  N
Sbjct: 117 -----------KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNN 165

Query: 170 YFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
           +   L  + A P  +  +     +  V +  +++ +F A   ++D+  +   +   LKM+
Sbjct: 166 FAAFLG-LQALPFKLAMNEGLSLYACVMRNFVILFIFFA---LIDVPLAKALFTKGLKMT 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  + 
Sbjct: 222 KQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSR 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  IP   Y+A+A +
Sbjct: 282 AAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHV 341

Query: 346 IYKIYHKK 353
           +  +   K
Sbjct: 342 LTYVLQMK 349


>gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB
           8052]
          Length = 613

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 192/361 (53%), Gaps = 40/361 (11%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  ++ N+G    S++ S+  +++ C + +            S L  +
Sbjct: 264 AGDDKTEEATPKKKSESRNKGQIARSKDVSVAITMVICTLLI------------SSLWGM 311

Query: 66  LASATQRKL---------EDISHIVFLLTHLSLSA----SRLVIPGLLLFMMFGIGSYLI 112
           L +  +  L          D +H    +++L+++        ++P  L  M+ G+ + L+
Sbjct: 312 LTNGFKEVLIYFFNFPMIGDFNHAT--ISNLAITTVIKIGSYLLPFALPIMVGGVIASLL 369

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q   ++    +KPSF +++   G+K + S  ++V+  K+ V I +V  I    ++ NY +
Sbjct: 370 QTGFIITAEPLKPSFGKLNPLSGLKNMISKRSIVDLSKNLVVITIVSIICYKYISGNYQS 429

Query: 173 MLDFISANPHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSY----HQWYSKLKMSK 226
           +L        S LY    +  V+ +++ I   I  + V+  G  Y         +++M+K
Sbjct: 430 ILGI------SNLYLPSLSDEVKNLVVGIFKQICIVLVIIAGIDYFLQVRMHNKEMRMTK 483

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE KQS G+P IK + K   R     +MM++ + AT++ITNPTH A+A++Y + ++
Sbjct: 484 QEVKDEYKQSEGDPKIKGKIKQRQRELGMKRMMQSVADATVVITNPTHLAIAIKYEEGKD 543

Query: 287 -DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            +AP +VAKG + +A K++ IA E+ +P+ E   LAR ++ +V ++  IP   Y+AVA++
Sbjct: 544 MEAPKVVAKGADYVAFKIKSIAKENEVPVIENKPLARLMYDRVEVDQDIPQDLYQAVAEI 603

Query: 346 I 346
           +
Sbjct: 604 L 604


>gi|91224467|ref|ZP_01259729.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
 gi|91190809|gb|EAS77076.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
          Length = 349

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 177/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  LI +LF F+    S  S L +L + 
Sbjct: 4   EKTEQPTAKKLRDARQKGQVAKSQEI-VSSALILALIIVLFAFADYYMSHISALILLPSK 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  ++   +V +   ++   + L+ P +L+  +  I S + Q   + +   VKP  K
Sbjct: 63  LAYQGFQE--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N   ++   +     +    
Sbjct: 121 KINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPTIT 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  IA 
Sbjct: 241 LHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAIAK 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  +P+ ++  LAR+L+    ++  IP    +A A+++
Sbjct: 301 EEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVL 338


>gi|328948397|ref|YP_004365734.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM
           2489]
 gi|328448721|gb|AEB14437.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM
           2489]
          Length = 365

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 180/343 (52%), Gaps = 13/343 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-L 66
           + KTE  S +K+  A  EG    S+E +  + +   ++ +L   +P  Y    ++ +   
Sbjct: 11  EGKTEEASEQKLRKARKEGRIAKSQELN-GTVVFLFVVAVLILLAPWFYKKICEMMIFYF 69

Query: 67  ASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNHVK 124
            + T +K++D   + +FL   L +     V+P  L  ++ G+   L+Q R  +     ++
Sbjct: 70  NNVTAQKIDDARFYYIFLRNLLPI-----VLPLSLAGILAGVIINLVQNRGFIFTTKTIE 124

Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P F ++  + G    K ++S+  L N  KS +K+ ++  +  + +  +    L F+ A  
Sbjct: 125 PKFSKIVPKFGEYFKKTLFSMMGLFNIAKSVLKVAIIVAVAVLLIRLDLAKTLGFLKAGG 184

Query: 182 HSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L      V ++L++  + +  + V D      ++  ++KM+KQE+K+E K+S G+P
Sbjct: 185 IDLALRSVSGMVAQLLVVSAVILIVIGVFDYVMQRREFKEQMKMTKQEVKEEFKESEGDP 244

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S  +  +   M +A   + ++ITNPTHYA++L++ Q + DAP++ AKG +  A
Sbjct: 245 EVKGRLESAQKEMLSQNMPKAVRESDVVITNPTHYAVSLQWKQEQQDAPMITAKGTDNTA 304

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           + M+KIA E+++PI E   LAR L+    +   IP  + +A+A
Sbjct: 305 QTMKKIAAENDVPIIENRPLARGLYADTEVGDIIPTSYLRAIA 347


>gi|108563180|ref|YP_627496.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPAG1]
 gi|107836953|gb|ABF84822.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
          Length = 358

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 182/353 (51%), Gaps = 33/353 (9%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDL- 62
           A + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   I+ V   S++ 
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF---IWWVDGFSEMY 58

Query: 63  -HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            HVL   +     E +     L   L      L++P L++ ++    S ++Q   +    
Sbjct: 59  RHVLKDFSLDFSKESVQE---LFNQLVKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S   
Sbjct: 116 VIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFL 164

Query: 182 HSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
             + + A   ++  L+             L     L  +D+     Q+ + LKM+KQE+K
Sbjct: 165 GELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVK 224

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV
Sbjct: 225 DEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQF-DEEHPVPV 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA
Sbjct: 284 VVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336


>gi|171058301|ref|YP_001790650.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6]
 gi|170775746|gb|ACB33885.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6]
          Length = 385

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 180/363 (49%), Gaps = 33/363 (9%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D+  +K   P+ ++++ A  +G    SR+ + F+ ++A  + L+ F +P   S+T  L  
Sbjct: 3   DSAQDKHLPPTERRLQKAREDGQVARSRDLAHFA-VVAAGLALVMFAAP---SLTQWLRD 58

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-------V 117
           L+A+  +  +  ++    +   LS    +L+ P L L +  G+ + L+           V
Sbjct: 59  LMATGLRFDVRMVTSPQMMGERLS----QLMYPALALCLGLGVVTGLVAMAAAVVSGGWV 114

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT---------ISLTE 168
                + P F +++   G+ RI S   + + +K+ +  +++ ++            +LT+
Sbjct: 115 WTFKPLMPDFSKLNPLTGLGRIVSKAQIGDMLKACLLALILASVGAAYLWAHLNDFALTQ 174

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           +      FI+A            +   L ++++ +A   ++D+        ++LKMS Q+
Sbjct: 175 SMPLPAAFIAATDR---------ISTGLWLLMIVLAASAMVDVPLQRFMHRNRLKMSHQD 225

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +K+E KQ  GN  +K + K   R   R +M+ A   A +++ NPTHYA+AL+Y      A
Sbjct: 226 MKEEFKQQEGNQEVKGKMKQRMREGSRRRMLAAVPEADLVVMNPTHYAVALKYDDASMGA 285

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P +VA G +L+A K+R +A E  +P+ + P LAR+L+    ++  IP   Y AVAQ++  
Sbjct: 286 PRIVAMGADLLALKIRDVAKESKVPVLQSPPLARALYAHGELDREIPLALYSAVAQVLAH 345

Query: 349 IYH 351
           ++ 
Sbjct: 346 VFQ 348


>gi|284041540|ref|YP_003391880.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684]
 gi|283945761|gb|ADB48505.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684]
          Length = 358

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 177/358 (49%), Gaps = 28/358 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVT------- 59
           D++TE  + +K +DA   G   ++R   +  ++ L   ++ L    P +           
Sbjct: 3   DDRTERATPRKRDDARRRGQ--VARSMDVNGAVVLIAGLFALSLLGPAVVGAMETSMRDS 60

Query: 60  ----SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
               SD    L   T   LE I+  +  L  L+L+    + P   +  + GI + L Q  
Sbjct: 61  FERISDPQAAL---TAGGLEGIA--MSTLRTLALA----IGPVAAVCAIAGIVANLGQVG 111

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +   +KP  +R++   G + ++         KS VK+ ++G I+ +++      +  
Sbjct: 112 LKPSAEALKPQAQRINPLSGARNVFGPRMFFEGAKSIVKVAVIGVIVAMAVAPKMTELSA 171

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEI 233
            + A+P  +       V  + I     IA L +  I ++Y ++    +L+MS Q++KDE 
Sbjct: 172 TVGASPGQLAAELVSLV--LSISQRAAIAYLVIGAIDYAYQKYTHEKQLRMSMQDVKDEF 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           +       +K+ Q+     + R +MM A   A +++TNPTH+A+AL+Y  T+  AP++VA
Sbjct: 230 RSQQLPAEVKSMQRRRMMQQARARMMSAVPDADVVVTNPTHFAVALKYDGTKP-APIVVA 288

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           KGQ+LIA ++R++A EH++P+ E   LARSL   V +   IP   Y+AVAQ++  +Y 
Sbjct: 289 KGQDLIALQIRRLAAEHDVPVIENRPLARSLHATVEVGQMIPEDLYQAVAQVLAHVYR 346


>gi|311695200|gb|ADP98073.1| flagellar biosynthesis protein FlhB [marine bacterium HP15]
          Length = 341

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 143/282 (50%), Gaps = 12/282 (4%)

Query: 76  DISHIVFLLTHLSLSASRLVIPGLLLFMM------FGIGSYLIQRIPVLNLNHVKPSFKR 129
           D+ H+   L   S  A+  + P L+L ++       GIG  LI      +   V P   R
Sbjct: 39  DMRHMSVQLIESSKEAAWALSPILVLLLIAAIFGSIGIGGLLI------SGKAVAPKLNR 92

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           +   +G+ R++S+ +L+  +K+  K+ LV  +  + L      +L          + H  
Sbjct: 93  MDPIKGLGRMFSMRSLIELVKAIAKVGLVMALAILILDLRTEDLLAIAEEPVVPAMEHVL 152

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
           +T+     ++      +  +D+ +  +    KL+M+KQE+KDE K + G P +K + + +
Sbjct: 153 WTIAWSFFLLSCATIIIAAIDVPFQIYDHQKKLRMTKQEVKDEYKDTEGKPEVKGKIRQL 212

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R   + +MM+    A ++ITNPTHYA+AL+Y Q    AP++VAKG + +A K+ +IA E
Sbjct: 213 QREMAQRRMMQDVPTADVVITNPTHYAVALKYDQKAMAAPIVVAKGADEVAFKIMEIARE 272

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + + I   P L R+++    I   IP   Y A+AQ++  ++ 
Sbjct: 273 NKVEILRTPPLTRAVYHNTDIGEEIPDGLYMAIAQVLAYVFQ 314


>gi|325475307|gb|EGC78492.1| FlhB [Treponema denticola F0402]
          Length = 390

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 186/351 (52%), Gaps = 10/351 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+  KI  A  EG    S++ +    +L  +I L+     G Y   S + V+  
Sbjct: 35  EGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIM---GPYIFKSLMQVIAF 91

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNHVKPS 126
              +   ED+ +  +    + L   + V P   + ++ G+   +IQ R  + +   ++P 
Sbjct: 92  FFERCTTEDVVNGTWFRIFV-LYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQPD 150

Query: 127 FKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PH 182
           FKRV+    R   + ++S   L N  KS  K++++G I  + +  N   M+  + ++ P+
Sbjct: 151 FKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDFPN 210

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           SI++ A  T  ++L+   + +  L++ D  +   Q+   LKMSK E+ DE K+  G+P++
Sbjct: 211 SIIFIAK-TAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPMV 269

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K +     ++ ++   ++    A ++ITNPTHYA+AL++ Q    AP++++KG +  A+ 
Sbjct: 270 KAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGVMPAPMVISKGVDATAQN 329

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA E+NIP  E   LAR+L+  V +   IP  +YK+++ +  KIY  K
Sbjct: 330 IKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYKSLSIIFLKIYSMK 380


>gi|157373227|ref|YP_001471827.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
 gi|157315601|gb|ABV34699.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
          Length = 376

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 180/349 (51%), Gaps = 13/349 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTS 60
            D   +KTE  + +K++ A ++G  P S++ +  + I+ C + L     +F+  +  V  
Sbjct: 3   KDTGQSKTEKATPQKLKKAQDQGQVPRSKDLAATALIIGCSLMLTASADWFATRVARVAQ 62

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPV 117
                  S T+ +L++      +++HL  S   ++    P ++L  +  + +  +   PV
Sbjct: 63  ----YNMSLTKAELDEPG---MMMSHLGTSLVEILNILGPIIVLIAVLAMVAGSMPGGPV 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            N  +    + R+    GI R++S+ +LV  +KS +KI+L+  I+   L  N  ++L + 
Sbjct: 116 FNFKNAAFKYSRIDPIAGIGRMFSMKSLVELVKSILKIVLLIGIMFTFLEHNLQSLLGYS 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                  +      +   ++ + + +  +T +D+ + Y   +++LKMS+Q++KDE KQ  
Sbjct: 176 QLPIDEAVRKGIDILSLGMLYLGIGMLVITFIDVPYQYWHHHNELKMSRQDVKDEHKQQE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P IK + + + +   R +   A  +A +++ NP HYA+AL+Y   + DAP ++ KG +
Sbjct: 236 GKPEIKAKIRQLQQRIGRSRADVAIPQADVLLVNPNHYAVALKYDVEKADAPYVLTKGTD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +A  MR+IA  H++ + E P LAR+++    +   IP   + A+A ++
Sbjct: 296 ELALYMRQIAKHHDVEVIELPPLARAIYYSTQVEQQIPAALFIAIAHVL 344


>gi|196045084|ref|ZP_03112317.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB108]
 gi|196024086|gb|EDX62760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB108]
          Length = 348

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|30019814|ref|NP_831445.1| flagellar biosynthesis protein FlhB [Bacillus cereus ATCC 14579]
 gi|229127096|ref|ZP_04256093.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4]
 gi|29895359|gb|AAP08646.1| Flagellar biosynthetic protein flhB [Bacillus cereus ATCC 14579]
 gi|228656212|gb|EEL12053.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4]
          Length = 348

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G I  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYIAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVM 337


>gi|330976011|gb|EGH76077.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 355

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 125/227 (55%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++          
Sbjct: 101 PKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEPLEQA 160

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P +K 
Sbjct: 161 MIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQ 220

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A K+R
Sbjct: 221 RIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIR 280

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y 
Sbjct: 281 EIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQ 327


>gi|206896079|ref|YP_002246703.1| flagellar biosynthetic protein FlhB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738696|gb|ACI17774.1| flagellar biosynthetic protein FlhB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 343

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 185/356 (51%), Gaps = 34/356 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSP------GI-YS 57
            +TE PS +++E A+ EGN P S E +    LF  +L   +Y   F S       G+ YS
Sbjct: 5   ERTEPPSPRRLERAIQEGNVPQSPELTGAIGLFVFVLILRVYYPRFVSSWQRMWFGVFYS 64

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V+ +              D++  V LL+ L +    L+   L   ++ G+  Y  + +P 
Sbjct: 65  VSPETAA----------HDLA--VVLLSTLPVLLVPLLAVVLATLVLSGVRLYPKKMVP- 111

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
             L+ + P+       + IKRI+S+ +L       +K+IL+ +++   L ++    +   
Sbjct: 112 -KLDGLNPA-------QNIKRIFSLQSLEQMGIGLLKVILL-SVVAYFLAKDRLVGIMSG 162

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           + +P   +  +   +  +L+ ++     + + D  +   +W++ LKM+K+E+K+E+K   
Sbjct: 163 TQDPIQFMSLSASILTDILLYLVAVYLLIGLADYAFQRRRWWNSLKMTKEEVKEEMKSIE 222

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R +S  R     + +    +AT++ITNPT YA+ALRY +    AP LVAKG  
Sbjct: 223 GDPTVKARLRSRMRQYAMRRSLADVKKATVVITNPTEYAVALRY-EKGMVAPELVAKGAG 281

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A++++  A  +N+P+   P LAR++F++V +   I P  Y+AVA ++ ++  KK
Sbjct: 282 WLAQRIKDEARRYNVPVVVRPELARTIFRKVEVGDYITPDLYQAVAAVLVEVMKKK 337


>gi|138894758|ref|YP_001125211.1| flagellar biosynthesis protein FlhB [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266271|gb|ABO66466.1| Flagellar biosynthetic protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 360

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 135/231 (58%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  + R++  +G+KR +S+  +V  +KS +K  ++GT++   L      +L  +S  P 
Sbjct: 127 LKMDWNRLNPVKGMKRFFSLRAIVELLKSMLKTGIIGTVVFTLLFFERNELLALVSKPPG 186

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           ++L        K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+I
Sbjct: 187 AMLAVIGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLI 246

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R K   R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A +
Sbjct: 247 KSRIKQKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALR 306

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA  + +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 307 IKEIAKANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|332533113|ref|ZP_08408982.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037395|gb|EGI73849.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 376

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 182/359 (50%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           MSE D+   KTE P+ KK++++  +G    S+E  ++F  I + +  LL+   P I    
Sbjct: 1   MSE-DSGQEKTEEPTGKKVDESKKKGQVARSKELGTMFVLIFSAISLLLY--GPEIGKGL 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFM-MFG--IGSYLIQRI 115
            ++   + S  + +  D + +  +   +S     L+ P  + +F+ +F   IG+ L+   
Sbjct: 58  YNIMGRMLSLNRNEAYDTTKMFAVWASVS---DVLIFPMAMFVFIILFAGIIGNTLLGGF 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
              +     P   ++S  +G KR++     V   K+ +K  +V     + L   +F  + 
Sbjct: 115 N-FSWQAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFSVVAGF-AVFLINTFFDEIL 172

Query: 176 FISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            +S  P  + + HA   +  + + +   +  +  +D  +  +  + +LKM+ QE+KDE K
Sbjct: 173 HLSIEPAPNNIIHALEILAWMFLALSCTLVIIAAIDAPYQSYTHHKQLKMTMQEVKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            S G+P IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP+++AK
Sbjct: 233 NSEGDPQIKARIRQTQRQMSQRRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A ++RK+A  + +PI E P L R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 293 GIDEMAMQIRKVAIGNEVPILESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351


>gi|206974845|ref|ZP_03235760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           H3081.97]
 gi|217959252|ref|YP_002337800.1| flagellar biosynthesis protein FlhB [Bacillus cereus AH187]
 gi|206746864|gb|EDZ58256.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           H3081.97]
 gi|217068144|gb|ACJ82394.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH187]
          Length = 348

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 181/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337


>gi|127512310|ref|YP_001093507.1| flagellar biosynthesis protein FlhB [Shewanella loihica PV-4]
 gi|126637605|gb|ABO23248.1| flagellar biosynthetic protein FlhB [Shewanella loihica PV-4]
          Length = 377

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 176/355 (49%), Gaps = 9/355 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ND    KTE  + ++ E A  +G    S+E    S++L           P +     
Sbjct: 1   MADNDTSQEKTEEATPRRREQAREKGQVARSKELGT-SAVLMSAAVGFAVIGPSLGQSLM 59

Query: 61  DLHVLLASATQRKLEDISHI----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            +   L + +++++ D + +    + +   L++  +  V+   L F+ F +G+ ++  I 
Sbjct: 60  SVMTKLFTMSRQEIYDTNSLFNIWMMVFKELAIPMASFVL--FLAFIAF-LGNVVLGGI- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +     P   +++   G KR++ +  LV   K   K  +V  +  + L+  +  +L  
Sbjct: 116 TFSAKAFMPKGNKMNPISGFKRMFGVQALVELTKGIAKFSVVALMAYLLLSYYFNDILTL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              +    +Y+A   +  + I++      + V+D+ +       +L+M+KQEIKDE K +
Sbjct: 176 SQGHLPGNVYNALDLLVWMFIVLCSSTVIIVVIDVPFQIWNHNKQLRMTKQEIKDEYKDT 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K R + + R   + +MM     A +I+ NP HYA+A++Y  T+  AP ++AKG 
Sbjct: 236 EGQPEVKGRVRQMQREMAQRRMMAEVPNADVIVVNPEHYAVAVKYDVTKAAAPYVLAKGV 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A K+R+IA EH++ I   P LAR+++    I+  IP   + AVAQ++  ++ 
Sbjct: 296 DDVAFKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQ 350


>gi|283784007|ref|YP_003363872.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
 gi|282947461|emb|CBG87008.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
          Length = 379

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 183/360 (50%), Gaps = 23/360 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       +  
Sbjct: 3   DSSSEEKTEKPSAQKLRKAREEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVRESF 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVL 118
           V +    Q ++ + + +   L H  L  ++ ++  L +           G +L   +P  
Sbjct: 62  VSVHQYAQ-EINNPAIVGQFLQHHLLIMAKFILTLLPMPAAALAASLIPGGWLF--LPKK 118

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--- 175
            L    P F +V+  +GI R++S  +LV   K  VK +++  ++ +SL  N+ + L    
Sbjct: 119 ML----PDFSKVNPLKGIGRLFSAEHLVETGKMMVKAVVILVMLWLSLRNNFASFLGLQA 174

Query: 176 --FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             F  A    +  ++  +V +  +++ +F A   V+D+  +   +   LKM+KQE+K+E 
Sbjct: 175 LWFKQAVSDGLALYS--SVMRNFVILFVFFA---VIDVPLAKKMFTKGLKMTKQEVKEEY 229

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K   G P +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VA
Sbjct: 230 KNQEGKPEVKARVRRLQRQLAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVA 289

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + IA  +R++A E  + + E P LARS++    IN  IP   Y+A+A ++  +   K
Sbjct: 290 KGTDEIALYIRQVAAESQVEVVEFPKLARSVYYTTQINQQIPFQLYRAIAHVLTYVLQMK 349


>gi|228958050|ref|ZP_04119785.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801567|gb|EEM48449.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 348

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVM 337


>gi|224437175|ref|ZP_03658156.1| flagellar biosynthesis protein FlhB [Helicobacter cinaedi CCUG
           18818]
 gi|313143640|ref|ZP_07805833.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
 gi|313128671|gb|EFR46288.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
          Length = 377

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 189/355 (53%), Gaps = 17/355 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KT+APS+ KI  A  EGN   S E + F  +L  L   +F   P     +  + + 
Sbjct: 2   ADEEKTQAPSTHKIAKAREEGNVSKSPELAGFFILLVGL-GAMFLLLPFWVEHSQKIFIH 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + S   +++ D+  +  L+  + L    ++ P  +  M+ G+ + + Q   +L+   +KP
Sbjct: 61  INSLITQEV-DVRMLGDLMLSIGLEVFIMLAPLFVALMVTGVIANIAQFGLLLSPKAIKP 119

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   GIK + S+  L++     +K+  V  I+  ++  ++F  L  +S    S L
Sbjct: 120 KLSKINPITGIKNVISLKKLLDGFMITLKV-FVAFIVGFAVFVSFFNELSSVS---MSGL 175

Query: 186 YHAFFTVRK------VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           Y      R+       +++IL FI  + V D     +Q+   LKMS +E+KDE KQ   +
Sbjct: 176 YGQIMWFRQKALILIGVLLILFFI--MAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQS 233

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA---PVLVAKGQ 296
           P IK + + + +    ++MM+    A+++ITNPTHYA+ALRY + E +    PV+VAKG 
Sbjct: 234 PEIKAKIRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYGEKEIEKGMPPVVVAKGI 293

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A +++ +A E+ I I E P LAR L++Q+ +N AIP   + AV Q++ ++ +
Sbjct: 294 DELAIRIKGVAREYEIRIIENPPLARELYRQLDLNQAIPHDLFAAVGQVLQEVAY 348


>gi|196247620|ref|ZP_03146322.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16]
 gi|196212404|gb|EDY07161.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16]
          Length = 360

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 135/231 (58%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K  + R++  +G+KR +S+  +V  +KS +K  ++GT++   L      +L  +S  P 
Sbjct: 127 LKMDWNRLNPVKGMKRFFSLRAIVELLKSVLKTGIIGTVVFTLLFFERNELLALVSKPPG 186

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           ++L        K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+I
Sbjct: 187 AMLAVIGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLI 246

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R K   R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A +
Sbjct: 247 KSRIKQKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALR 306

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA  + +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 307 IKEIAKANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|229017055|ref|ZP_04173974.1| Flagellar biosynthetic protein [Bacillus cereus AH1273]
 gi|229023236|ref|ZP_04179746.1| Flagellar biosynthetic protein [Bacillus cereus AH1272]
 gi|228738030|gb|EEL88516.1| Flagellar biosynthetic protein [Bacillus cereus AH1272]
 gi|228744228|gb|EEL94311.1| Flagellar biosynthetic protein [Bacillus cereus AH1273]
          Length = 348

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 181/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + +  L
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D++  ++L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DVTEYLYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHALLQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337


>gi|168334564|ref|ZP_02692720.1| flagellar biosynthetic protein FlhB [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 366

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 144/254 (56%), Gaps = 2/254 (0%)

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI-NNLVNFMKSFVKIIL 157
           ++LF++  + SY      V  L  +KP   + +   G K+I+ I ++L+  +K+  K+I+
Sbjct: 109 IVLFLVAFLASYWQVGFKV-TLEPLKPKLNKFNPVNGFKKIFGIRDSLIELLKNLFKVII 167

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           +GT+   ++     + L F      +I  +    +R++   + L    L   D  W  ++
Sbjct: 168 LGTVFYNTIISQIPSFLGFYDLTIQNIAIYVADVIRQIGTNVGLAFLVLAYGDYRWQKYK 227

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
           +   +KM+K ++K+E KQS G+P +K++ +   R     +MM+    A +IITNPTH+A+
Sbjct: 228 FEDSIKMTKHDVKEEFKQSEGDPAVKSKIRQKMREMSISRMMKTVPEADVIITNPTHFAV 287

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           A+ Y + +  APV+VAKG + +A+++++IA   N+ I E   LAR+L+  V I SAIP  
Sbjct: 288 AIYYDRVKGIAPVVVAKGTDNMAQRIKEIAAISNVQIVENKPLARALYYTVDIGSAIPQE 347

Query: 338 FYKAVAQLIYKIYH 351
            Y+AVA+++  +Y 
Sbjct: 348 LYEAVAEVLAFVYR 361


>gi|24374727|ref|NP_718770.1| flagellar biosynthesis protein FlhB [Shewanella oneidensis MR-1]
 gi|24349387|gb|AAN56214.1|AE015759_6 flagellar biosynthetic protein FlhB [Shewanella oneidensis MR-1]
          Length = 376

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 172/344 (50%), Gaps = 13/344 (3%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ ++++ A  +G    S+E    + +L+    L +   PGI    S++   + +  +  
Sbjct: 13  PTGRRLDQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN----HVKPSFKR 129
           + D +    +     +  S +  P LL  M+  +    I  + +  +N     + P   +
Sbjct: 72  IFDTNQ---MFNVWGVVGSEIGWP-LLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASK 127

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187
           +S   G KR++ +  LV   K   K  +V  + +  L  +YF  +  +SA+  P ++ YH
Sbjct: 128 MSPIAGFKRMFGVQALVELTKGIAKFSVV-ALASYLLLSHYFNDILLLSADHLPGNV-YH 185

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   +  + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R +
Sbjct: 186 ALDLLVWMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R   + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A
Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVA 305

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             HNI I   P LAR+++    ++  +P   + AVAQ++  ++ 
Sbjct: 306 RAHNIAIVTAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQ 349


>gi|153831633|ref|ZP_01984300.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
 gi|148872143|gb|EDL70960.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
          Length = 375

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 184/360 (51%), Gaps = 30/360 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58
           MSE  + D KTE  S +K++ A  EG  P ++E   F++ +  L   +FF+S    I+  
Sbjct: 1   MSEQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVAMFFYSQLNSIWES 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRI 115
            S +     + T+  LE    +V    HL  S +    +++P   + ++   GS ++   
Sbjct: 57  MSGVFRYNMTLTKADLESPKQLV---EHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +    +V P   +++   GIKRI+S  +LV  +KS  K++++  I+   L +N+   L 
Sbjct: 114 WMFRPANVMPKLSKLNPISGIKRIFSTRSLVELVKSTFKVLVIFGILYGYL-DNHLQPLL 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226
            +   P   L   F      LIM +LF         +    VLDI +   +   +L+M+K
Sbjct: 173 GMQNLP---LSQGF-----SLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTK 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K + G P +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +
Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLS 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           DAP +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344


>gi|21672516|ref|NP_660583.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008464|sp|Q8K9S1|FLHB_BUCAP RecName: Full=Flagellar biosynthetic protein flhB
 gi|21623138|gb|AAM67794.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 381

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 183/362 (50%), Gaps = 25/362 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP---GIYSVTS 60
           +D  + KTE P+   I+    +G    SRE       L  L+ L+F  S      YS+  
Sbjct: 3   HDINEEKTEQPTEHHIKKFRKKGETRYSRE-------LNSLLILIFGLSNLWWSRYSIIF 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV--- 117
           +L  ++ ++     ++I     L    ++S +       +L + F   S+LI  I +   
Sbjct: 56  ELKTIMFNSFNFN-QNI-----LTNQQNISLNFFFFIKKILIVFFPFFSFLICIIIIPPI 109

Query: 118 ------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
                  N   +K +F R++L  G+K+ +S    +   K+ +K+ ++  I    L   ++
Sbjct: 110 LFGGIKFNFTSLKLNFARLNLLHGLKKFFSFQIFIELFKTTLKLFIISCISIFYLWIYFY 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            +L   + N  S L   F  +    I+I+L +  + +LD+ W    +Y KLKM+ QEIKD
Sbjct: 170 KILFLSTKNISSSLLDGFNVIFYCCILIILGLIPIVILDVFWRQWSYYKKLKMTHQEIKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K+  G+P IK R +   +  +R +M+    +A +IITNP HYA+AL+Y   + +AP +
Sbjct: 230 EFKEREGSPQIKARIRQQMKINLRRRMISDVPKADVIITNPIHYAIALKYDIHKMNAPKV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG    A K++KIA ++ I I   PSLAR+L++   I   IP   YKAVA+++  ++ 
Sbjct: 290 IAKGIGATAMKIQKIALKNGIAIIASPSLARALYRYSEIGQYIPGPLYKAVAEILAWVWK 349

Query: 352 KK 353
            K
Sbjct: 350 VK 351


>gi|289523553|ref|ZP_06440407.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503245|gb|EFD24409.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 367

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 185/368 (50%), Gaps = 43/368 (11%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + ++   A  EG   +++   L SS+ A L  +L  F+ G +        L +
Sbjct: 16  EEKTEPATPRRRRKAREEGQ--VAKSMDLVSSV-AILTGVLLLFAMGFF--------LFS 64

Query: 68  SATQRKLEDISHI--------------------VFLLTHLSLSASRLVIPGLLLFMMFGI 107
           +  Q  + ++SH+                    V+L T   L+   L   G++L     +
Sbjct: 65  TLKQFFVWELSHLSDDVNFRGQWIWRASARGLAVYLKTWFPLAI--LSALGVVLISFAQV 122

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
           G +LI   P++      P   R++   G+K++ S+ +LV  +K  +K  L+ +++   L 
Sbjct: 123 G-FLITPKPLV------PKLNRLNPVSGLKKVLSLRSLVELIKGLLKATLLASVLYFGLK 175

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
           ++  T+L  +       L     T+  + + + + +  + + D  +   ++   +KMS+Q
Sbjct: 176 KSLETLLLTMQMPLSGGLGILSKTILNLSLKMAIALFAIAIFDYAYQKWEFERSIKMSRQ 235

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIK+E KQ  G+P +K R +   R   R +MM    +A ++ITNPT  A+A+ Y +   D
Sbjct: 236 EIKEEFKQLEGDPQLKRRIRQRQRELARRRMMAEVKKADVVITNPTRIAVAILYDKKIMD 295

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL-- 345
           APV++AKG  ++A K+R+ A +++IP+ + P LA +L+  V I   IP   YKAVA++  
Sbjct: 296 APVVIAKGLGVVAGKIREEAIKYDIPLVQRPPLAWTLYNNVEIGEKIPEELYKAVAEILV 355

Query: 346 -IYKIYHK 352
            +Y++ HK
Sbjct: 356 FVYRLKHK 363


>gi|238025868|ref|YP_002910099.1| flagellar biosynthesis protein FlhB [Burkholderia glumae BGR1]
 gi|124695889|gb|ABN14283.1| FlhB [Burkholderia glumae BGR1]
 gi|237875062|gb|ACR27395.1| FlhB [Burkholderia glumae BGR1]
          Length = 408

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 178/365 (48%), Gaps = 31/365 (8%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
            D+   KTE  + ++ E A  EG    SRE + F+ +LA   Y  +  S  I        
Sbjct: 3   EDSDLEKTEDATPRRREKAREEGQVARSREFASFA-LLAAGFYGAWLLSGPIGEHLRTML 61

Query: 56  -------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108
                   +   D H +L  A +  +E +S I  +L    L+A               +G
Sbjct: 62  RGSLTFDRASAFDTHQMLTGAGRAGMEGLSAIAPVLALTGLAAL---------AAPIALG 112

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
            +L      L+   +   F R+    G+ RI+S   ++    +  K ++VG I  I++  
Sbjct: 113 GWL------LSTKAIGFKFDRLDPISGLGRIFSPQGVIQLGMALAKTVIVGGIGGIAIWR 166

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           ++  ML  ++   H  L      V     M +  +  +  +D+ +   Q+  KL+M+K+E
Sbjct: 167 SHDEMLGLLNLPLHEALAGTLHLVAVCCGMTVAGMLVVAGMDVPYQIWQYNKKLRMTKEE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +K E ++S G+P +K R +   R+  R +MM    +A +++TNPTH+A+ALRY   E  A
Sbjct: 227 VKREHRESEGDPHVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P ++AKG NL+A ++R++A EH +PI E P LAR+L+  V +   IP   Y AVA+++  
Sbjct: 287 PKVIAKGVNLVALRIRELAEEHRVPILEAPPLARALYHNVDLEREIPGSLYSAVAEVLAW 346

Query: 349 IYHKK 353
           +Y  K
Sbjct: 347 VYQLK 351


>gi|310816836|ref|YP_003964800.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare
           Y25]
 gi|308755571|gb|ADO43500.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare
           Y25]
          Length = 360

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 176/345 (51%), Gaps = 21/345 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  A  +K+  P+ KK+EDA  +G+ P S + ++ ++     + L    +    +  +
Sbjct: 1   MSEEAAGADKSHDPTPKKLEDARKKGDHPKSADLTIAAAYGGYYLGLTALGAGLALAAVN 60

Query: 61  DLHVLLASATQRKLEDIS---HIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
            L  LL  A     +  S   H+V   LL+  SL+    V+P + +  M  + S   QR 
Sbjct: 61  QLGGLLYHADGLATDAFSAPAHVVLRPLLSITSLA----VLPLITVPAMLALLSLFAQRA 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V   + + P   R+S     K+ + +  ++ F+KS  K++L    +   L+ N+    D
Sbjct: 117 LVFAPSKLVPKLSRISPLAVAKQKFGLAGIIEFLKSAAKLLLYTGALAWFLSTNF----D 172

Query: 176 FISANP----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            I+A P     S+L      +  +L++ L+    L VLD  W   +     +MS+QE+ D
Sbjct: 173 EIAATPAMPARSVLVFMGQMLAAMLLIALVISLVLGVLDAVWQQIRHLRDNRMSRQEVMD 232

Query: 232 EIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           E+K+S G+P  +   RQ+ IA +   +++     +A++II NPTHYA+AL++      AP
Sbjct: 233 EMKESEGDPHTRQQRRQRGIAIAM--NQVAAEVPKASVIIVNPTHYAVALQWQPDSRRAP 290

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           V +AKG + +A +MR+IA EH +PI  +P  AR+L+ Q  +   I
Sbjct: 291 VCLAKGIDEVALRMRQIAQEHGVPIQSDPLTARALYAQTEVGQEI 335


>gi|315127306|ref|YP_004069309.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913]
 gi|315015820|gb|ADT69158.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 179/359 (49%), Gaps = 19/359 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFF--FSPGIYSVTS 60
            D+   KTE P+ KK++DA  +G    S+E  ++F  I + +  L++      G+Y +  
Sbjct: 3   EDSGQEKTEEPTPKKVDDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYRIMG 62

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S  + +  D + +  +   +   A  L+ P + +F++  + +  I    +   
Sbjct: 63  RM----LSLNRNETYDTTKMFAVWGEV---ADVLLFP-MSMFVLIIVLAAFIGNTMLGGF 114

Query: 121 N----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           N       P   ++S  +G  R++     +  +KS +K  LV     I L   +F  +  
Sbjct: 115 NFSWQAAAPKASKMSPMKGFTRMFGPQAAIELLKSLLKFGLVAAF-AIFLINTFFDEILH 173

Query: 177 IS--ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
           +S  + P +I+ HA   +  + + +   +  +  +D  +  +    +LKM+ QE+KDE K
Sbjct: 174 LSIESAPGNIV-HALEILAWMFLGMSCTLIIIAAIDAPFQSYSHNKQLKMTMQEVKDEYK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            S G+P IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP+++AK
Sbjct: 233 NSEGDPQIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A ++RKIA  + +PI E P+L R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 293 GVDELAMQIRKIALGNEVPIVESPTLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351


>gi|296502370|ref|YP_003664070.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171]
 gi|296323422|gb|ADH06350.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171]
          Length = 348

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337


>gi|113969638|ref|YP_733431.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-4]
 gi|114046868|ref|YP_737418.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-7]
 gi|113884322|gb|ABI38374.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-4]
 gi|113888310|gb|ABI42361.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-7]
          Length = 376

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 170/344 (49%), Gaps = 13/344 (3%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +L+    L +   PGI    S++   + +  +  
Sbjct: 13  PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN----HVKPSFKR 129
           + D +    +     +  S +  P LL  M+  +    I  + +  +N     + P   +
Sbjct: 72  IFDTNQ---MFNVWGVVGSEIGWP-LLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASK 127

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187
           +S   G KR++ +  LV   K   K  +V  I    L  +YF  +  +SA+  P ++ +H
Sbjct: 128 MSPIAGFKRMFGVQALVELTKGIAKFSVV-AIAAYLLLSHYFNDILLLSADHLPGNV-HH 185

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   +  + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R +
Sbjct: 186 ALDLLVWMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R   + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A
Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVA 305

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             HNI I   P LAR+++    +   IP   + AVAQ++  ++ 
Sbjct: 306 RAHNIAIVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQ 349


>gi|167630310|ref|YP_001680809.1| flagellar biosynthetic protein flhb, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593050|gb|ABZ84798.1| flagellar biosynthetic protein flhb, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 362

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 188/347 (54%), Gaps = 5/347 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++K+  +A  +G    S+E +   + L  L   L   S G+ ++     +++  
Sbjct: 15  EKTEKPTAKRRSEARKKGQVAKSQEVN---TALILLFGFLALRSLGVQTMDGMERMMVYL 71

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVI--PGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                LE+++ +  + T  +++   +++  P +L  M  G+ +  +Q   + +   +K +
Sbjct: 72  LGTVTLEEVTPVSVITTGTTIAIRTMLMIAPFMLAAMAAGLLASYLQVGFLFSSEGLKMN 131

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           + ++++  G+K I+S  +LV  +KS +K+ ++  +   ++ ++       +  +  + + 
Sbjct: 132 WGKLNVIAGLKNIFSSRSLVELVKSLLKVSVISYVAYSAVVKHLHLFPKLLGMDVQTAVA 191

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                   V   + + +  +  LD G+ +++    LKMSKQE+KDE KQ+ G+P IK++ 
Sbjct: 192 AISEVAYDVGFRVAVLLLLVAALDYGYQWYKHEESLKMSKQEVKDEFKQAEGDPQIKSKI 251

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   R     +MM+   +A ++ITNPTH+A+AL+Y      APV++AKGQ+ +A K+R +
Sbjct: 252 KQRMREMAMRRMMQELPKADVVITNPTHFAVALKYESGSMTAPVVIAKGQDYVALKIRAV 311

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A +H IP+ E+  LAR+L++ V I   IP   ++AVA++   +Y  K
Sbjct: 312 AQDHGIPLVEDKPLARTLYRAVEIGQEIPAELFQAVAEVFAFVYRLK 358


>gi|269960154|ref|ZP_06174530.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3]
 gi|269835125|gb|EEZ89208.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3]
          Length = 375

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 186/360 (51%), Gaps = 30/360 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58
           MSE  + D KTE  S +K++ A  EG  P ++E   F++ +  L   +FF+S    I+  
Sbjct: 1   MSEQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVAMFFYSQLNSIWES 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRI 115
            S +     + T+  LE+   +V    HL  S +    +++P   + ++   GS ++   
Sbjct: 57  MSGVFRYNMTLTKADLENPKQLV---EHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +    +V P   +++   GIKRI+S  ++V  +KS VK++++  I+   L +N+   L 
Sbjct: 114 WMFRPANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYL-DNHLQPLL 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226
            +   P   L   F      LIM +LF         +    V+DI +   +   +L+M+K
Sbjct: 173 GMQNLP---LSQGF-----SLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTK 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K + G P +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +
Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLS 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           DAP +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344


>gi|228984854|ref|ZP_04145024.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090732|ref|ZP_04221965.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42]
 gi|228692674|gb|EEL46400.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42]
 gi|228774804|gb|EEM23200.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 348

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +++  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYMMGMLLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|218233750|ref|YP_002366454.1| flagellar biosynthesis protein FlhB [Bacillus cereus B4264]
 gi|218161707|gb|ACK61699.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           B4264]
          Length = 348

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIREIKFIFLSILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|42525573|ref|NP_970671.1| flagellar biosynthesis protein FlhB [Treponema denticola ATCC
           35405]
 gi|13122809|gb|AAK12645.1|AF232219_4 FlhB [Treponema denticola]
 gi|41815584|gb|AAS10552.1| flagellar biosynthetic protein FlhB [Treponema denticola ATCC
           35405]
          Length = 390

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 186/351 (52%), Gaps = 10/351 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+  KI  A  EG    S++ +    +L  +I L+     G Y   S + V+  
Sbjct: 35  EGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIM---GPYIFKSLMQVIAF 91

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNHVKPS 126
              +   ED+ +  +    + L   + V P   + ++ G+   +IQ R  + +   ++P 
Sbjct: 92  FFERCTTEDVVNGTWFRIFV-LYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQPD 150

Query: 127 FKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PH 182
           FKRV+    R   + ++S   L N  KS  K++++G I  + +  N   M+  + ++ P+
Sbjct: 151 FKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDFPN 210

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           SI++ A  T  ++L+   + +  L++ D  +   Q+   LKMSK E+ DE K+  G+P++
Sbjct: 211 SIIFIAK-TAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPMV 269

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K +     ++ ++   ++    A ++ITNPTHYA+AL++ Q    AP++++KG +  A+ 
Sbjct: 270 KAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGIMPAPMVISKGVDATAQN 329

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++IA E+NIP  E   LAR+L+  V +   IP  +Y++++ +  KIY  K
Sbjct: 330 IKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYQSLSIIFLKIYSMK 380


>gi|46203826|ref|ZP_00050927.2| COG1377: Flagellar biosynthesis pathway, component FlhB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 196

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 109/171 (63%), Gaps = 1/171 (0%)

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           F    P + L        K++  +L   A + + D  +  H+W ++L+M+K+E+K E K+
Sbjct: 16  FAQLEPGAALQGTLSLALKMMGGMLAAYAGIALGDALYQRHRWRNRLRMTKEEMKQEHKE 75

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P +K R + + +SR++ +MM A   AT+++TNPTH+A+ALRY +    APV VAKG
Sbjct: 76  SEGSPEVKARIRQLRQSRLKKRMMAAVPTATVVVTNPTHFAVALRY-EAGMAAPVCVAKG 134

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            + +A ++R +A EH++P+ E P LAR+L   V +++ IP   Y+AVA++I
Sbjct: 135 VDSLALRIRAVAAEHDVPVMENPPLARALHATVEVDAEIPAEHYRAVAEVI 185


>gi|118581843|ref|YP_903093.1| flagellar biosynthesis protein FlhB [Pelobacter propionicus DSM
           2379]
 gi|118504553|gb|ABL01036.1| type III secretion exporter [Pelobacter propionicus DSM 2379]
          Length = 324

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 144/262 (54%), Gaps = 9/262 (3%)

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVK 154
           P ++  M+  I S++IQ          + +F    L    G KR+++   LV  +KSF+K
Sbjct: 64  PLVVTVMLTSIASHVIQDGGRFEFQWQRVTFDITKLNPLNGFKRLFNKTALVEILKSFLK 123

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI---MILLFIATLTVLDI 211
           ++++G I    L +    +     A+   IL +      K+++    I+L I+ L ++ +
Sbjct: 124 LVVIGWIAYRVLKDEVQNIALLADADMVGILAYMGRVAFKIVVHTCGIMLIISILDLMYV 183

Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            W+Y      LKM+KQE+KDE K+   NP IK + K +     + +M +    A ++ITN
Sbjct: 184 KWNY---LDGLKMTKQEVKDEHKEQ-ENPEIKGQIKKMQYQAAKRRMTKIIPTADVVITN 239

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTHYA+AL+Y +    APV+VAKG +++A+ ++KIA E ++ + E   LAR L+ QV  N
Sbjct: 240 PTHYAIALKYDRQRMIAPVVVAKGVDIMAQAIKKIAQESSVTLVENRFLARELYDQVEEN 299

Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
            AIP   Y AVA+++  +Y  K
Sbjct: 300 EAIPETLYAAVAEVLAYVYRLK 321


>gi|319944146|ref|ZP_08018424.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC
           51599]
 gi|319742640|gb|EFV95049.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC
           51599]
          Length = 384

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 176/359 (49%), Gaps = 14/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E    D +  A S +++  A  EGN P SR+ A L   ++   +  L    P   S+ 
Sbjct: 1   MAETSKEDRQLPA-SEQRLRKAREEGNVPRSRDVAHLL--VMGAGMGALALMGP---SLA 54

Query: 60  SDLHVLLASA----TQRKLEDISHIVFLLTHLS-LSASRLVIPGLLLFMMFGIGSYLIQR 114
             +  L+AS      Q +L  +  +   L H   L    L I  LL      I +  I  
Sbjct: 55  DGMRRLMASTFAFDGQVRLYFLDALQPALAHFGDLGWRTLAI--LLSVCAAAIAASTIPG 112

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              L++  +     R+S   G+KRI+S+ NLV F+K  +   L+G I +    + +    
Sbjct: 113 GFNLSVKALGVKISRISPASGLKRIFSLRNLVEFLKLSLLASLLGAIGSWYAMDRFPEFA 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                +    + HA   V   L + +L +  L + D+ + + +  + L+M++ E K E +
Sbjct: 173 ALSHGSLAGSVSHAMALVVGGLGLSMLLLFALALFDVPFQWFRHRADLRMTRDEAKREHR 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +S G+P +K + +S  R   R +M+ A   A I++ NPTHYA+A+RY +    AP +VAK
Sbjct: 233 ESEGDPQLKGQIRSRQREAARRRMLSAVPSADIVVVNPTHYAVAIRYDEAAGGAPRVVAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G + +A +++ IA E  +P+   P LAR+L+  V ++  IP   Y AVAQ++  +Y  K
Sbjct: 293 GLDELAMRIQAIARESGVPVLSAPPLARALYAHVELDQEIPQALYVAVAQVLVYVYQLK 351


>gi|323698077|ref|ZP_08109989.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. ND132]
 gi|323458009|gb|EGB13874.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
           ND132]
          Length = 356

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 184/348 (52%), Gaps = 13/348 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--VTSDLHVLL 66
           +KTE  + K+ +    EGN    +E     ++LA ++ L F    G YS   T       
Sbjct: 8   SKTERATQKRRDKQREEGNVAKGQEIPKVMTLLAGVLTLRFMI--GFYSDQFTEIYRWTF 65

Query: 67  ASATQRKLED-ISHIVFL--LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             A   +++  +++ +F   L  ++L    LV+P +L+  +    S  +Q   +     +
Sbjct: 66  LEAINFQVDKPMAYALFAWGLKKMAL----LVVPFMLVLALVAFLSLRLQVGSLWTTKPL 121

Query: 124 KPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           +P F ++ ++  GIK++  S + L+   KS ++ + V     I + +    +L    +N 
Sbjct: 122 EPKFGKLFNIMSGIKKLMLSPDALLKLGKSLLQAMAVAIAPYIVIRQELPNLLPLFHSNV 181

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             IL        +++   L+ +  + V D+ +    +  ++KM+K EIKDE KQ+ G+P 
Sbjct: 182 QGILAFIVTVGYRMVCYALIPMLLIAVADLVYERWNYEEQIKMTKDEIKDERKQAEGDPK 241

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK +Q+      +  +M +   +A ++ITNPTHYA+AL+Y   +  AP+++AKG N +A+
Sbjct: 242 IKQKQRQKMMEVMASRMFQDIPKADVVITNPTHYAVALQYDPLKAPAPLVLAKGVNKVAE 301

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +++++A E++IPI E   LA++L+KQV I   IP   ++AVA ++ K+
Sbjct: 302 RIKEVARENSIPIEENRPLAQALYKQVEIGETIPEELFQAVAAILAKL 349


>gi|229155340|ref|ZP_04283450.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342]
 gi|228628055|gb|EEK84772.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342]
          Length = 348

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B
           str. Eklund 17B]
          Length = 613

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 182/340 (53%), Gaps = 2/340 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + KK  D+  +G    S++ S+  ++ AC + +   +   + +    L   L 
Sbjct: 265 DEKTEEATPKKKSDSKKKGQMARSKDVSVAITMAACTLAVSMLWGSLVDTFKGVLTYFLV 324

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             + +   +++ +  L++   L  + + +P  L  M+ G+ S +IQ   ++    +KPS 
Sbjct: 325 FPSLKDFNELTAMS-LISFSLLKVATVFLPFALAIMIAGVASSIIQTGFLITGEPLKPSL 383

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++  +G+K ++S  +LV  +K+ V + ++  +    +  NY  +++  +    S+   
Sbjct: 384 GKINPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGDE 443

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  +   I L +  +   D    +     +LKM+KQEIKDE KQ+ G+P +K + K
Sbjct: 444 IKNLVIGIFKQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMRKI 306
              R     +MM++ S AT++ITNPTH A+AL+Y +  N +AP +VAKG + +A +++ I
Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A ++++PI E   LAR ++ +V I+  IP   Y+ VA+++
Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVL 603


>gi|225871939|ref|YP_002753393.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC
           51196]
 gi|225794521|gb|ACO34611.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC
           51196]
          Length = 409

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 185/355 (52%), Gaps = 20/355 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP-------GIYSVTSD 61
            +TE  S ++ ++A  +G+ P SR+ +  +++LA  + +L +  P       G YS   D
Sbjct: 4   ERTEKASPRRKQEAREKGDIPHSRDLTSAAAMLAGTL-VLGWAGPMWEARWAGSYSEMLD 62

Query: 62  LHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           L    +    + +E +  I   ++T L      LV+  L  F    +      R      
Sbjct: 63  LSQPRSWLDGQMVEKMLAIRAAMMTVLWP----LVVMFLACFAAAVLAGVAQGRGVQFAG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +R++    +++ +S   L   +KS + +  +   +   + E   T +   S  
Sbjct: 119 EAIAPKIERLNPLTVLQQTFSSRGLTRMLKSALPVAALACFVAGKVREQ--TAIPVFSLT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L+ + +++  V    +LF+   + +D    +  W  +L+MSKQE+++E KQ+ GNP
Sbjct: 177 RLPSLFTSMYSL-MVAAAAVLFV--WSAIDYAVEWWSWEQRLRMSKQEVREEFKQTEGNP 233

Query: 241 IIKNRQKSIARSRIRHKMMEA-TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
            ++ R  SI R ++R K + A  SRA+++ITNPTHYA+AL++     +AP ++AKG++L+
Sbjct: 234 EVRRRIASI-RRQLRRKALRADVSRASVVITNPTHYAVALQFSLELMEAPRVLAKGRDLL 292

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A+++++ A    +P+ E P LAR+L++QV +  +IP   Y AVA ++  +Y + +
Sbjct: 293 AEQIKQEARWAGVPLVENPPLARALYRQVEVGQSIPFALYAAVAAILAWLYRRDM 347


>gi|117919803|ref|YP_868995.1| flagellar biosynthesis protein FlhB [Shewanella sp. ANA-3]
 gi|117612135|gb|ABK47589.1| flagellar biosynthetic protein FlhB [Shewanella sp. ANA-3]
          Length = 376

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 170/344 (49%), Gaps = 13/344 (3%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +L+    L +   PGI    S++   + +  +  
Sbjct: 13  PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMERAA 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN----HVKPSFKR 129
           + D +    +     +  S +  P LL  M+  +    I  + +  +N     + P   +
Sbjct: 72  IFDTNQ---MFNVWGVVGSEIGWP-LLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASK 127

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187
           +S   G KR++ +  LV   K   K  +V  I    L  +YF  +  +SA+  P ++ +H
Sbjct: 128 MSPIAGFKRMFGVQALVELTKGIAKFSVV-AIAAYLLLSHYFNDILLLSADHLPGNV-HH 185

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   +  + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R +
Sbjct: 186 ALDLLVWMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R   + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A
Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVA 305

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             HNI I   P LAR+++    +   IP   + AVAQ++  ++ 
Sbjct: 306 RAHNIAIVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQ 349


>gi|309388837|gb|ADO76717.1| flagellar biosynthetic protein FlhB [Halanaerobium praevalens DSM
           2228]
          Length = 352

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 174/354 (49%), Gaps = 9/354 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    KTE P+SK+ ++A  EGN    +E     ++LA  ++L F      + V +++ 
Sbjct: 3   DDGTGEKTEEPTSKRKKEAKEEGNVAKGKEIGQAITLLASFMFLYFLMQQIFFGVLNEIQ 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               +        I     +L     S    + P +++    GI    +Q   +     +
Sbjct: 63  YYFKNLIIEPF-TIKMTFEILYDAFFSVIEKIYPIMIVTAAAGILVNFLQIGALFTTKPL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P  K+V   +G K I+S+  +V  +KS  K+ L+  I    L  N    LD    + + 
Sbjct: 122 VPDLKKVDPIKGAKNIFSLKGVVELLKSLFKLALIAVIAYHFLMGN----LDIFQKSINQ 177

Query: 184 ILYHAFFTVRKVL--IMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGN 239
            L  A   +  ++  +   + IA + +  +   Y +W     LKMSK E+K E K+  G+
Sbjct: 178 GLEEALSAIAHLISRMAFAVIIALIILGILDLLYQRWQHNKDLKMSKYEVKQERKEMEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+I+ ++K   R    ++MM +   A ++ITNPTH A+AL Y   E +APV+VAKG++ +
Sbjct: 238 PMIQQQRKRRQREMSMNRMMSSVKDADVVITNPTHIAVALEYDLEEMEAPVIVAKGEDFV 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K+++ A E  + I E   LARSL K   I   +P   Y+AVA+++ +I+  +
Sbjct: 298 AQKIKEKAREAEVKIIENKPLARSLNKMSEIGDQVPIELYQAVAEILAEIFKNR 351


>gi|261839413|gb|ACX99178.1| flagellar biosynthetic protein [Helicobacter pylori 52]
          Length = 358

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 178/356 (50%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E             I    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESIQKL---------FNQLAKDTFLLLLPILIILVVMAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI----LLFIATLTV-------LDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+      L  I++L         +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALALISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|303248000|ref|ZP_07334266.1| type III secretion exporter [Desulfovibrio fructosovorans JJ]
 gi|302490557|gb|EFL50462.1| type III secretion exporter [Desulfovibrio fructosovorans JJ]
          Length = 357

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 178/352 (50%), Gaps = 21/352 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + K+ + A  +G+   S+E    + + A L    F     I S+  DL  +   
Sbjct: 6   SKTEQATQKRRDKAREKGSVARSQELPKLTVLFAGL----FVIRLTIRSLGDDLKEVFTL 61

Query: 69  ATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK- 124
              ++L     +  +  L   LS   + +++P   L ++  I +++ QRI V ++ H K 
Sbjct: 62  FLGQRLHFEATVDAVNALFWMLSGKLAMMLLP---LLVVIAIIAFITQRIQVGSIWHSKL 118

Query: 125 --PSFKRV--SLREGIKRIYSINNLVNFMK--SFVKIILVGTIITISLTENYFTMLDFIS 178
             P F  +   +    K + +   LV   K  +    I V   + I    N F  L + S
Sbjct: 119 FEPDFSNLFNPIAALQKLLINPKTLVQLGKQVAMASAIAVAPYLIIKNKFNEFLPLFYQS 178

Query: 179 ANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                + L    FT+    +  ++ IA L V    W Y +    LKM+K E+KDE KQ+ 
Sbjct: 179 TQSLTTFLLENGFTMVLYTLFPMVLIAVLDVWYTRWDYEE---NLKMTKDEVKDETKQAL 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P++K +Q+      ++ +M++   +A ++ITNPTH A ALRY   E+ AP+L+AKG +
Sbjct: 236 GDPVVKQQQRRKMMEVMQRRMLQDVPKADVVITNPTHLACALRYDPKESPAPLLLAKGAD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +A+K+++IA E+ IPI E   LA++L+K V I   IP   Y+AVA ++ ++
Sbjct: 296 HLAEKIKEIARENRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQL 347


>gi|315654597|ref|ZP_07907503.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333]
 gi|315491061|gb|EFU80680.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333]
          Length = 367

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 186/344 (54%), Gaps = 13/344 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K++    EG    S++ + + S+ A    L         +        + 
Sbjct: 5   GEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARRQT---IT 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPS 126
           + T  K+   S +V  L     +    ++P +L  ++  +   +IQ   V  +  H+KP 
Sbjct: 62  AVTLTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGKGVFPSAKHLKPK 121

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + ++L +GIK++  +  L N +K+ +K + VG ++ + ++     + + + A  H  L+
Sbjct: 122 LQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVIS----GVTEVMGAAGHISLW 177

Query: 187 H--AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +  A+   +  L++    IA +  +VLD  + + +   + KMSKQEIK+E KQ  G+P+I
Sbjct: 178 NLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMI 237

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++S A +  R++M+   + A +++ NPTHYA+AL+Y +    AP ++AKG + +A +
Sbjct: 238 KSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKY-EAGQGAPKVLAKGVDHVAAR 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R++A +  IP  E+ SLAR+L+  V + +AIP   Y AVAQ++
Sbjct: 297 IREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVL 340


>gi|227876759|ref|ZP_03994868.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC
           35243]
 gi|307701577|ref|ZP_07638594.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris
           FB024-16]
 gi|227842656|gb|EEJ52856.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC
           35243]
 gi|307613256|gb|EFN92508.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris
           FB024-16]
          Length = 373

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 151/257 (58%), Gaps = 10/257 (3%)

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           ++P +L  M+  +   +IQ   V  +  H+KP  + ++L +G+K+I  +  L N +K+ +
Sbjct: 89  LLPFMLAIMLVAVLVNIIQGKGVFPSAKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALL 148

Query: 154 KIILVGTIITISLTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIAT---LTVL 209
           K + VG ++ + ++     +++ + A  H S      +   K+ ++I   +     +++L
Sbjct: 149 KTVAVGVVLYLIIS----GVMEIMGAAGHMSGRDLVNYGTDKMWLLIWASVIAGIVVSIL 204

Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
           D  + + +   + KMSKQE+K+E KQ  G+P IK++++S A    R++MM   + A +++
Sbjct: 205 DALFIFKKNQKQTKMSKQEVKEEYKQQEGDPQIKSQRRSRALQMSRNRMMNDAAEADVVV 264

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            NPTHYA+AL+Y +    AP +VAKG + +A ++R+IA ++ +P+ E+ +LAR+L+    
Sbjct: 265 VNPTHYAVALKY-EPGQGAPKVVAKGVDHLASRIREIALDNRVPMVEDVALARTLYSTAE 323

Query: 330 INSAIPPVFYKAVAQLI 346
           I   IP   Y AVAQ++
Sbjct: 324 IGVEIPEELYTAVAQVL 340


>gi|91795014|ref|YP_564665.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
           OS217]
 gi|91717016|gb|ABE56942.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
           OS217]
          Length = 376

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 174/352 (49%), Gaps = 14/352 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57
           MSE    D KTE  + ++I  A  +G  P S++ +  + IL C + L     +F+  I  
Sbjct: 1   MSETPKHD-KTEDATPQRIRKAREQGQVPRSKDLASAALILGCSLMLTSSADWFATKISQ 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR---LVIPGLLLFMMFGIGSYLIQR 114
           +T   + +L S      ED+     +L HL  S  +   L+ P  L+  +    +  +  
Sbjct: 60  LTR--YNMLVSH-----EDLLQDDVMLMHLGTSLIKMLELLGPLFLIVALLAAIAGALPG 112

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P+ +  +    + R+    GI RI+S  +L+  +KS +KI L+  I+   L  +    L
Sbjct: 113 GPIFSFENANFKYSRIDPIAGIGRIFSSRSLIELLKSVLKITLLIGIMLSFLDTHLIDFL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            +        +      +   ++ + L +  +  +D+ + Y     +LKMS+QEIKDE K
Sbjct: 173 SYSQLPVDEAVTRGIDMLSAGMLYLGLGLIVIAFIDVPYQYWHHLQELKMSRQEIKDEHK 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           Q  G P +K + + +     R +   +  +A +++ NPTHYA+AL+Y     DAP ++ K
Sbjct: 233 QQEGKPEVKAKIRQLQHRMGRSRADTSIPKADVLLVNPTHYAIALKYDPELADAPYVLTK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G+  +A  MRK+A +H++ I E P+LAR+++    ++  IP   + A+A ++
Sbjct: 293 GKEELALYMRKLAKQHDVEIIEIPALARAIYYSTQVDQQIPGALFMAIAHVL 344


>gi|322832554|ref|YP_004212581.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602]
 gi|321167755|gb|ADW73454.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602]
          Length = 384

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 180/348 (51%), Gaps = 7/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+EAP++ ++E A  EG  P SRE    +SIL     L   +  G  S+   L V+++ 
Sbjct: 8   EKSEAPTAHRLEKAREEGQIPRSRE---LTSILMLGGGLTLLWMSG-ESMARQLGVMISQ 63

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +     +S    +L  ++    R V   +P +   ++  + + L+    + +    + 
Sbjct: 64  GLKFDHGMVSDDRQVLQQMATLLGRAVWALLPVIGGLILIALAAPLLLGGLMFSGKSFEF 123

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F R+    G+KR++S   L   +K+ +K +LVGT+  + L   +  M+  ++      L
Sbjct: 124 KFSRMDPIAGLKRLFSGQVLAELLKAVLKALLVGTVAGLYLWHKWPDMMRLMAQPTIPAL 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
             A   V    +M++L +  +   D+ W       KL+MSKQ+I+DE K   G+P +K R
Sbjct: 184 GEALNMVVFCGLMVVLGLTPMVGFDVFWQIWSNLKKLRMSKQDIRDEHKSQEGDPHVKGR 243

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   +A ++R+
Sbjct: 244 IRQQQRAMARRRMMADVPKADVIVTNPTHYAVALQYSENKMSAPKVLAKGAGDVALRIRE 303

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 304 LGVEHKIPMLEAPPLARALYRHSDIGQQIPATLYAAVAEVLAWVYQLK 351


>gi|308182928|ref|YP_003927055.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4]
 gi|308065113|gb|ADO07005.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4]
          Length = 358

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 177/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E        +   SI    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|283782110|ref|YP_003372865.1| type III secretion exporter [Pirellula staleyi DSM 6068]
 gi|283440563|gb|ADB19005.1| type III secretion exporter [Pirellula staleyi DSM 6068]
          Length = 363

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 135/233 (57%)

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N +    +R++     KRI++++NLV+     +K++L+G +  +SL +   T+L+    +
Sbjct: 118 NKLAMDLERINPLNNSKRIFAVSNLVSLGFGLLKVLLIGVVAGLSLWQQRATILELTDQS 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I      T     I I   +  L +LD G+ + +    L+M+ Q++++E+K+  G+P
Sbjct: 178 AAVIGKFVLETALWTSIKIAAALLVLAILDYGYQWWKHEQDLRMTTQQVREEMKEQTGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
               R+K I R  + +++  +  +A +I+TNPT  A+AL+Y      AP+++AKG  ++A
Sbjct: 238 QTMQRRKQIQRQLVMNRLSTSIPKADVIVTNPTELAIALQYDPNTMPAPIVIAKGAGVLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R++A E+N+P+ E   LAR+L++ V +N  +P   Y AVA+++  +Y  K
Sbjct: 298 QRIRRLALENNVPVVERKELARALYQLVEVNQPVPSEQYAAVAEVVRYVYQLK 350


>gi|152965635|ref|YP_001361419.1| type III secretion exporter [Kineococcus radiotolerans SRS30216]
 gi|151360152|gb|ABS03155.1| type III secretion exporter [Kineococcus radiotolerans SRS30216]
          Length = 360

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 174/347 (50%), Gaps = 20/347 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P+ KK+++A +EGN P SR+ + + S  A  + +      G         VLL 
Sbjct: 3   GEKTEKPTPKKLKEARDEGNIPFSRDVAAWLSTGAGAVTIPHTIESG--------QVLLR 54

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-----LFMMFGIGSYLIQRIPVLNLNH 122
            A        +         +L+A+   IPG+L       +   + S  +Q         
Sbjct: 55  KAFAGVGAVAADPEPARALAALAATFAGIPGVLGPLAAATVFAVVVSGGVQGTLRPAPKK 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP- 181
           +KP F  ++   G K+ +    L    KS +K +++GT++ + + +N           P 
Sbjct: 115 LKPKFSNLNPVNGFKQHWGPQALWEGTKSLLKTVVIGTVMWL-VVKNLVPQFVGSGLMPL 173

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            S+L      V K++ + +L    +   D   SY +   KL+MSKQ+IK E K + G+P+
Sbjct: 174 ASVLTLTKGAVVKIVAVTVLLGLIIAAGDYAMSYRRTMKKLRMSKQDIKMEHKNAEGDPL 233

Query: 242 IKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           +K   R K +A SR  ++MM   + A +++ NPTH A+ALRY +    AP +VAKG   I
Sbjct: 234 LKGAIRSKQMAMSR--NRMMSDVASADVVLVNPTHIAVALRY-EPGTGAPKVVAKGAGAI 290

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A K+R+ A E+++P+ ++  LAR+++K   I   IPP F+ AVA+++
Sbjct: 291 ASKIREKAKENDVPLVKDVQLARTMYKSCKIGQEIPPEFFAAVAKVL 337


>gi|206970587|ref|ZP_03231539.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH1134]
 gi|228952152|ref|ZP_04114244.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229043525|ref|ZP_04191234.1| Flagellar biosynthetic protein [Bacillus cereus AH676]
 gi|229069320|ref|ZP_04202610.1| Flagellar biosynthetic protein [Bacillus cereus F65185]
 gi|229109225|ref|ZP_04238824.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15]
 gi|229144382|ref|ZP_04272787.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24]
 gi|229149974|ref|ZP_04278200.1| Flagellar biosynthetic protein [Bacillus cereus m1550]
 gi|206734223|gb|EDZ51393.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH1134]
 gi|228633496|gb|EEK90099.1| Flagellar biosynthetic protein [Bacillus cereus m1550]
 gi|228639013|gb|EEK95438.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24]
 gi|228674235|gb|EEL29480.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15]
 gi|228713807|gb|EEL65692.1| Flagellar biosynthetic protein [Bacillus cereus F65185]
 gi|228725747|gb|EEL76995.1| Flagellar biosynthetic protein [Bacillus cereus AH676]
 gi|228807506|gb|EEM54033.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 348

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +    D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKNT--DSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|157376185|ref|YP_001474785.1| flagellar biosynthesis protein FlhB [Shewanella sediminis HAW-EB3]
 gi|157318559|gb|ABV37657.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
          Length = 377

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 175/355 (49%), Gaps = 9/355 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + ++ E +  +G    S+E    + ++A  +       P I     
Sbjct: 1   MAENDSSQEKTEEATPRRREQSREKGQVARSKELGTSAVLMAAAVGFAMT-GPSIAKALY 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL----LLFMMFGIGSYLIQRIP 116
           ++  +L +  + ++ D ++ +FL+    +   +L  P L    +L +M  +G+ ++  I 
Sbjct: 60  NIMEMLFTLDRTQIFD-TNALFLI--WPVIGQQLAFPMLSFIAILTLMAFLGNIVLGGI- 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             +     P   +++   G KR++ +  LV   K   K  +V       L+  +  +L  
Sbjct: 116 TFSTKAFMPKTDKMNPINGFKRMFGVQALVELTKGIAKFSVVALSAYFLLSYYFNDILAL 175

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              +    +YHA   +  + I++      + V+D+ +       +LKM+KQEIKDE K +
Sbjct: 176 SRDHLPGNVYHALDLLIWMFIILCSSTIIIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDT 235

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +K + + + R   + +MM     A +I+ NP HYA+A++Y   +  AP ++AKG 
Sbjct: 236 EGKPEVKGKVRQMQREMAQRRMMGEVPNADVIVVNPDHYAVAVKYDAMKATAPFVLAKGV 295

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A K+R+IA EH I I   P LAR+++    I+  IP   + AVAQ++  ++ 
Sbjct: 296 DEVAFKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQ 350


>gi|228920479|ref|ZP_04083824.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229189867|ref|ZP_04316877.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876]
 gi|228593541|gb|EEK51350.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876]
 gi|228839109|gb|EEM84405.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 348

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|269976286|ref|ZP_06183282.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1]
 gi|306817706|ref|ZP_07451448.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC
           35239]
 gi|269935615|gb|EEZ92153.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1]
 gi|304649520|gb|EFM46803.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC
           35239]
          Length = 373

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 151/257 (58%), Gaps = 10/257 (3%)

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           ++P +L  M+  +   +IQ   V  +  H+KP  + ++L +G+K+I  +  L N +K+ +
Sbjct: 89  LLPFMLAIMLVAVLVNIIQGKGVFPSAKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALL 148

Query: 154 KIILVGTIITISLTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIAT---LTVL 209
           K + VG ++ + ++     +++ + A  H S      +   K+ ++I   +     +++L
Sbjct: 149 KTVAVGVVLYLIIS----GVMEIMGAAGHMSGRDLVNYGTDKMWLLIWASVIAGIVVSIL 204

Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
           D  + + +   + KMSKQE+K+E KQ  G+P IK++++S A    R++MM   + A +++
Sbjct: 205 DALFIFKKNQKQTKMSKQEVKEEYKQQEGDPQIKSQRRSRALQMSRNRMMNDAAGADVVV 264

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            NPTHYA+AL+Y +    AP +VAKG + +A ++R+IA ++ +P+ E+ +LAR+L+    
Sbjct: 265 VNPTHYAVALKY-EPGQGAPKVVAKGVDHLASRIREIALDNRVPMVEDVALARTLYSTAE 323

Query: 330 INSAIPPVFYKAVAQLI 346
           I   IP   Y AVAQ++
Sbjct: 324 IGVEIPEELYTAVAQVL 340


>gi|297379968|gb|ADI34855.1| flagellar biosynthetic protein FlhB [Helicobacter pylori v225d]
          Length = 358

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 177/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E        +   SI    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + ++L            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQEL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|298346009|ref|YP_003718696.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC
           43063]
 gi|315657498|ref|ZP_07910380.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236070|gb|ADI67202.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC
           43063]
 gi|315491970|gb|EFU81579.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 367

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 186/344 (54%), Gaps = 13/344 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K++    EG    S++ + + S+ A    L         +        + 
Sbjct: 5   GEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARRQT---IT 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPS 126
           + T  K+   S +V  L     +    ++P +L  ++  +   +IQ   V  +  H+KP 
Sbjct: 62  AVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPSAKHLKPK 121

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + ++L +GIK++  +  L N +K+ +K + VG ++ + ++     + + + A  H  L+
Sbjct: 122 LQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVIS----GVTEVMGAAGHISLW 177

Query: 187 H--AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +  A+   +  L++    IA +  +VLD  + + +   + KMSKQEIK+E KQ  G+P+I
Sbjct: 178 NLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMI 237

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++S A +  R++M+   + A +++ NPTHYA+AL+Y +    AP ++AKG + +A +
Sbjct: 238 KSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKY-EAGQGAPKVLAKGVDHVAAR 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R++A +  IP  E+ SLAR+L+  V + +AIP   Y AVAQ++
Sbjct: 297 IREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVL 340


>gi|196039022|ref|ZP_03106329.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           NVH0597-99]
 gi|196030167|gb|EDX68767.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           NVH0597-99]
          Length = 348

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337


>gi|304390233|ref|ZP_07372187.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326715|gb|EFL93959.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 367

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 186/344 (54%), Gaps = 13/344 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K++    EG    S++ + + S+ A    L         +        + 
Sbjct: 5   GEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARRQT---IT 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NLNHVKPS 126
           + T  K+   S +V  L     +    ++P +L  ++  +   +IQ   V  +  H+KP 
Sbjct: 62  AVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPSAKHLKPK 121

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + ++L +GIK++  +  L N +K+ +K + VG ++ + ++     + + + A  H  L+
Sbjct: 122 LQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVIS----GVTEVMGAAGHISLW 177

Query: 187 H--AFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +  A+   +  L++    IA +  +VLD  + + +   + KMSKQEIK+E KQ  G+P+I
Sbjct: 178 NLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGDPMI 237

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++S A +  R++M+   + A +++ NPTHYA+AL+Y +    AP ++AKG + +A +
Sbjct: 238 KSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKY-EAGQGAPKVLAKGVDHVAAR 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R++A +  IP  E+ SLAR+L+  V + +AIP   Y AVAQ++
Sbjct: 297 IREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVL 340


>gi|88858095|ref|ZP_01132737.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
 gi|88819712|gb|EAR29525.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
          Length = 376

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 10/357 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +   KTE P+SKK+EDA  +G    S+E      ++   I L+ +  P I     
Sbjct: 1   MAEG-SDQEKTEEPTSKKLEDARKKGQIARSKETGTVVVLIMSAISLIIY-GPEIGMGLK 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    + +  D + +  +   ++    + +  G+ +F++  + +  I    +   
Sbjct: 59  RVMARLLDLNRTEAFDTTKMFAVWGDIA----KELWFGMTMFVLVILVAAFIGNTFLGGF 114

Query: 121 N----HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           N       P   ++S  +G+ R++     +   K  +K +LV     + +   ++ +L  
Sbjct: 115 NFSWSAAAPQANKLSPAKGLVRMFGPQAAIELFKGLLKFLLVAVTAVLLIKFYFYEILHL 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                 S + HA   +  + + +   +  + V+D  +       +LKM+ QE+KDE K S
Sbjct: 175 SLETAPSNIQHALTMLAWMFLGLSCTLILVAVVDAPFQLWNHNKQLKMTLQEVKDEYKNS 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP+++AKG 
Sbjct: 235 EGDPQIKARIRRTQREMSQRRMMQDVPDADVIVTNPTHYSVALKYDTDRAGAPIVLAKGI 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + IA ++RKIA EH++PI E P L RSLF    I   IP   + AVAQ++  +Y  K
Sbjct: 295 DEIALQIRKIAKEHDVPILESPMLTRSLFHTTDIGQQIPDQLFIAVAQVLAYVYQLK 351


>gi|229172415|ref|ZP_04299974.1| Flagellar biosynthetic protein [Bacillus cereus MM3]
 gi|228610886|gb|EEK68149.1| Flagellar biosynthetic protein [Bacillus cereus MM3]
          Length = 348

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S   +P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---VPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|229132597|ref|ZP_04261445.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196]
 gi|228650829|gb|EEL06816.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196]
          Length = 348

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDRAIPEDLYVAVIEVM 337


>gi|32266517|ref|NP_860549.1| flagellar biosynthesis protein FlhB [Helicobacter hepaticus ATCC
           51449]
 gi|32262568|gb|AAP77615.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
           51449]
          Length = 375

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 186/359 (51%), Gaps = 25/359 (6%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH-- 63
           A + KT+APS+ KI+ A  EGN   S E + F  +L  L  +       I       H  
Sbjct: 2   ADEEKTQAPSAHKIQKAREEGNVSKSPELAGFFILLVGLGLMFLLIPFWIECAQRIFHHI 61

Query: 64  --VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
             +++    +R L +      L+  + L    ++ P  L+ M+ G+ + + Q   +L+  
Sbjct: 62  NKLIILDVDRRLLGN------LMLSIGLEVFFMLAPLFLVLMITGVIANIAQFGLLLSPK 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +KP   +++   GIK + S+  +++     +K+  V  I+  ++  ++F  L  +S   
Sbjct: 116 AIKPKISKINPITGIKNVISLKKILDGFMITLKV-FVAFIVGFAVFVSFFNELPSVSM-- 172

Query: 182 HSILYHAFFTVRK------VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            S LY      R+       +++IL FI  + V D     +Q+   LKMS +E+KDE KQ
Sbjct: 173 -SGLYGQIMWFRQKALILIGVLLILFFI--MAVSDYLIKRYQYIKSLKMSIKEVKDEYKQ 229

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE---NDAPVLV 292
              +P +K + + + +    ++MM+    A+++ITNPTHYA+ALRY + E      P+LV
Sbjct: 230 YEQSPEVKAKIRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYSEKEIAQGMPPILV 289

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           AKG + +A +++ IA E++I I E P LAR L++Q+ +N  IP   + AV Q++ ++ +
Sbjct: 290 AKGIDELAIRIKSIAREYDIKIIENPPLARELYRQLDLNQVIPHDLFAAVGQVLSEVAY 348


>gi|332297777|ref|YP_004439699.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM
           12168]
 gi|332180880|gb|AEE16568.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM
           12168]
          Length = 378

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 18/355 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + +TE PS  K+  A  EG  P S+E S    L   +LA ++   + F+ G   +   L 
Sbjct: 31  EGRTEQPSETKLRKAREEGRIPKSQELSGALVLLFPVLALIMLAPWLFT-GFIKI---LR 86

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ-RIPVLNLNH 122
                    +L D +    L      +  R+V+P  L  ++ GI + +IQ R  +     
Sbjct: 87  FYFDRCVSVELNDPA----LAAEFFSAVIRMVLPVSLTALVAGIAANVIQNRGFLFTTKP 142

Query: 123 VKPSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           ++P F ++    G    K ++S     N +KS +K+ ++     I +  +   +L  +  
Sbjct: 143 IEPKFSKILPHFGEYFKKTLFSFEGAFNIVKSLLKVTVIFAAAYILVKNDLPKLLSLMDV 202

Query: 180 NPHS-ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           +  + + Y A  T + ++I  ++FI  + + D      Q+   +KMSKQE+K+E K+  G
Sbjct: 203 SLWTGVAYIAGMTAKLLVIAAVIFI-VIAIPDYLVQRRQFMESMKMSKQEVKEEFKEMEG 261

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K+R +      +   M    +++ ++ITNPTHYA+A+ Y  +    P++ AKG + 
Sbjct: 262 DPLVKSRIRQYMHQMLSQNMPANVAKSDVVITNPTHYAVAIEYDSSVMQGPMVTAKGVDS 321

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A++++ IA E+ +PI E   LAR+L+ +  I   +P  +Y+A+A ++  +Y+ K
Sbjct: 322 LARRIKDIARENAVPIVENRPLARALYAEAEIGEIVPENYYQALAVILANVYNMK 376


>gi|300117307|ref|ZP_07055097.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1]
 gi|298725142|gb|EFI65794.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1]
          Length = 348

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +++  L L  S    P L+L   F   +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHSFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT ++ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFVVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|218896703|ref|YP_002445114.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           G9842]
 gi|218542717|gb|ACK95111.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           G9842]
          Length = 348

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 179/341 (52%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|260767957|ref|ZP_05876891.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|260615987|gb|EEX41172.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
          Length = 376

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 181/352 (51%), Gaps = 13/352 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           MS+  +  +KTE  S +K++ A  +G  P ++E   F++ +  L   ++F++  P I+  
Sbjct: 1   MSDQASSQDKTEKASPQKVKKAREQGQIPRAKE---FTTAVIFLAVAIYFYAQLPAIWQS 57

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +     S T+  L++   +V  L H       L++P  L+ ++  + S +I    + 
Sbjct: 58  IAGVFRYNLSLTRADLDNPMQMVEQLGHSLGMVIELLMPMFLVIIVVTLASSMILGGWLF 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              ++ P   +++   GI RI+S  +LV  +KS +K+ ++  ++   L  +   ML  + 
Sbjct: 118 RPANLLPKLNKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLG-MQ 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             P   L   F  +  +L   LL +        V+DI +   +   +LKM+KQE+K+E K
Sbjct: 177 GLP---LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G P IK R + I +   R ++ +   +A ++I NPTHYA+AL+Y    +DAP +VAK
Sbjct: 234 NNEGRPEIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G +  A  ++++A ++ + I   P L RS++    I  A+P   Y AVA ++
Sbjct: 294 GVDETALHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHIL 345


>gi|229096254|ref|ZP_04227227.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29]
 gi|229115209|ref|ZP_04244619.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3]
 gi|228668349|gb|EEL23781.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3]
 gi|228687214|gb|EEL41119.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29]
          Length = 348

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KSTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|163800125|ref|ZP_02194026.1| flagellar biosynthetic protein [Vibrio sp. AND4]
 gi|159175568|gb|EDP60362.1| flagellar biosynthetic protein [Vibrio sp. AND4]
          Length = 375

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 182/360 (50%), Gaps = 30/360 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58
           MSE  + D K+E  S +K++ A  EG  P ++E   F++ L  L   +FF+S     +  
Sbjct: 1   MSEQSSQD-KSEKASQQKVKKARQEGQIPRAKE---FTTALIFLAVTMFFYSQLNSTWES 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRI 115
            S +     + T+  LE+   +V    H   S + L+   +P   + ++   GS ++   
Sbjct: 57  MSGVFRYNMTLTKADLENPKQLV---EHFGQSLAVLIEMLLPLFTVIIIVTCGSSMVLGG 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +  L  V P   +++   GIKRI+S  +LV  +KS VK++++  I+   L  +   +L 
Sbjct: 114 WMFRLASVMPKLSKLNPISGIKRIFSTRSLVELVKSTVKVLVIFGILYGYLNSHLQPLLG 173

Query: 176 FISANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSK 226
             +      L   F      LIM +LF         +    V+DI +   +   +L+M+K
Sbjct: 174 MQNLP----LSQGF-----SLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTK 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K + G P +K R + I +   R K+ +    A ++ITNPTH+A+AL+Y  + +
Sbjct: 225 QELKEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHFAVALKYEPSLS 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           DAP +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y A+A ++
Sbjct: 285 DAPFVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAIAHIL 344


>gi|332673425|gb|AEE70242.1| flagellar biosynthetic protein FlhB [Helicobacter pylori 83]
          Length = 358

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E             I    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|217033738|ref|ZP_03439164.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10]
 gi|216943787|gb|EEC23227.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10]
 gi|317178869|dbj|BAJ56657.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F30]
          Length = 358

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E             I    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|94496754|ref|ZP_01303329.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58]
 gi|94423767|gb|EAT08793.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58]
          Length = 375

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 176/358 (49%), Gaps = 14/358 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +   +KTE P+ K++ DA  +G+   S++      ++   + LLF        +T 
Sbjct: 1   MAQKNDGGDKTEKPTPKRLRDARRKGDIAKSKDVGPALGMIMWFLLLLFAAGHAGAQITG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +AT    +  + ++     L L +  L+I G     + G+ +  +Q   ++  
Sbjct: 61  LMRDTLGTATSMPFDAAAPVLGWAALLVLVSVSLLILGPA--ALIGVIAEFVQVGALVTT 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KPS  +++  EG+KR++S++NLV  +K+  K  L+ TI  + L  +    +  + A 
Sbjct: 119 EKLKPSLDKLNPIEGLKRMFSMDNLVELLKTVAKATLILTIAGVILWRSADGFVSLVQAA 178

Query: 181 PHSILYHAFFTVRKVLIMIL------LFIATLTVL------DIGWSYHQWYSKLKMSKQE 228
             S + H    V   ++ ++      LF  T  +       D  W+ H +  KL+MS+++
Sbjct: 179 GWSPVDHHGDQVASAMLALIRSVSIQLFAWTCAIFLLVAAADRAWAQHSFIKKLRMSRRD 238

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           IK E K + G+P+++ +++ +         + A  RA +++TNPTH A+AL Y   +   
Sbjct: 239 IKQEHKDNEGDPMLRAQRRQLHEEWANQNAVAAAGRANVLLTNPTHLAIALDYDPEDCPV 298

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           P++ AKG+  +A  MR  A    +PI     LAR ++ +  +   IP   + A+A++I
Sbjct: 299 PMVAAKGEGPLAAAMRAEAEREGVPIVRNIGLARGVWGESEVGGPIPRDRFDAIAEII 356


>gi|299066525|emb|CBJ37715.1| Flagellar biosynthetic protein flhB [Ralstonia solanacearum CMR15]
          Length = 363

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 194/364 (53%), Gaps = 30/364 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D   +K++  +  K++ A  +G    SR+A    S +   + ++F  S G  +   
Sbjct: 1   MADQDM--DKSQPATPYKLQKAREKGQVAKSRDAI---SAVTFTVAMVFLASQGWDTWRR 55

Query: 61  DLHV---LLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
              +   LLA A      +  + H++  L    L    L IP LL  ++  +   L+Q  
Sbjct: 56  VFQINRALLAHAGNVDATEPAMWHLIDQLVRAVLG---LGIPFLLALLLAAVAGNLLQTG 112

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL---TENYFT 172
           P+ +   +KP + R +  +G KR++S+  L +  ++ +K+IL+G +   SL   T  ++ 
Sbjct: 113 PIFSFEPIKPEWSRANPVQGFKRLFSLRTLFDGARALLKLILLGLVAYFSLKSLTPQFYH 172

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +    ++     L     ++   +  +L+FIA   +LD+ ++  ++  K++MS +E+KDE
Sbjct: 173 LASLPASGFVRTLLDDLASLGLKMSAMLMFIA---LLDLIYTRREFSKKMRMSHKELKDE 229

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMME------ATSRATIIITNPTHYALALRYIQTEN 286
            K   G+P I++R +     ++RH+M++       T  A ++ITNPTH A+ALRY+  E 
Sbjct: 230 FKHREGDPRIRSRLR-----KLRHEMLKRSRSVSKTRDADVLITNPTHVAVALRYVHGEM 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++P LVAKG   +A  MRKIA +H IP+ +  +LAR+LF  + ++ ++ P  Y  VA++I
Sbjct: 285 ESPQLVAKGAGALAAVMRKIAAKHQIPVIQNRALARALFHSLEVDRSVQPALYADVARII 344

Query: 347 YKIY 350
             ++
Sbjct: 345 VWVF 348


>gi|169831895|ref|YP_001717877.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638739|gb|ACA60245.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 359

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 132/231 (57%), Gaps = 8/231 (3%)

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +R++  +G KRI+S   L  F K+ +KI  VG +    L      +L     +P   LY
Sbjct: 127 LERLNPVQGFKRIFSSRGLFEFAKAILKICFVGILCFWVLYARVGDLLVLSVTSPGQGLY 186

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN-- 244
                +  V          + VLD+ +  +  +  L M++ E++DE +Q+ G+P +K+  
Sbjct: 187 LLHNVLLTVAAAAAGAYLLIAVLDLVYQRYAHHKSLMMTRFEVRDEYRQTEGDPHLKSWL 246

Query: 245 --RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             RQ+ I+ +RI+ ++     RAT+++TNP H A+ALRY + E DAP++ AKG   +A++
Sbjct: 247 RKRQREISMNRIKDEV----PRATVVVTNPIHVAVALRYREGEMDAPLVTAKGAGYLAER 302

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++A +H +P+ E   LA+ L+++VP+  ++P   Y+AVA+++  IY  K
Sbjct: 303 IKELAAQHKVPVVENRELAQYLYRRVPVGESVPVAVYQAVAEILAMIYRLK 353


>gi|296282253|ref|ZP_06860251.1| flagellar biosynthesis protein FlhB [Citromicrobium bathyomarinum
           JL354]
          Length = 374

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 26/357 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      KT AP+ K++ DA N+G+   S++    + +L    +L F   P + S  S
Sbjct: 1   MSETAG--EKTFAPTEKRLRDAANKGDVLRSKDLGTAAVMLVGAAWLAFA-GPWLLSEIS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLS-------ASRLVIPGLLLFMMFGIGSYLIQ 113
           +L          ++ D      ++  L+ +       A  ++I  LL  + FG G ++ +
Sbjct: 58  NLLRESFQFDSSEIVDFRPDRLMIEGLTAALPPIFALAVPVIIVTLLSQLAFGRGRFVAK 117

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
               L   H      R++   G+KR++  N L+   K  +K++L+G +  +  + +Y  +
Sbjct: 118 N---LEFKHT-----RINPASGLKRMFGPNGLIEMGKGILKVVLLGGLAALWWSYSYENL 169

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L     N    L  A+++V  + +++   +  +  +D+   + +   KLKMS QE+KDE 
Sbjct: 170 LGLGRGNLSQQLTTAWWSVISLFLVLCGGLVVIAAVDLPIQWVRRNKKLKMSHQEMKDEN 229

Query: 234 KQSYGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+S G+P  K+    RQ+ IA   +   M EA      +ITNPTH+A+AL Y   +  AP
Sbjct: 230 KESEGSPEAKSARRQRQRDIAAGSVSGAMREAQ----FVITNPTHFAVALSYDPEKASAP 285

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +++AKG+   A  M+++A E  +P  E P LARS++        I    Y A+A ++
Sbjct: 286 IVLAKGRGEKALAMKELAREFGLPTLEYPQLARSVYFTSRERQVICEDLYGAIAAVL 342


>gi|229029449|ref|ZP_04185532.1| Flagellar biosynthetic protein [Bacillus cereus AH1271]
 gi|228731908|gb|EEL82807.1| Flagellar biosynthetic protein [Bacillus cereus AH1271]
          Length = 348

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|222095392|ref|YP_002529452.1| flagellar biosynthesis protein flhb [Bacillus cereus Q1]
 gi|228945372|ref|ZP_04107727.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|221239450|gb|ACM12160.1| flagellar biosynthetic protein [Bacillus cereus Q1]
 gi|228814344|gb|EEM60610.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 348

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +++  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVM 337


>gi|254464574|ref|ZP_05077985.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I]
 gi|206685482|gb|EDZ45964.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I]
          Length = 362

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 170/352 (48%), Gaps = 11/352 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+  P+ +K+  A  +G    S + S+ ++ L  +I    F++ G  SV  
Sbjct: 1   MSGQDDDSDKSFEPTEQKLRKAREKGEVAKSTDLSVAAAYLGLIIA---FYTAGSSSVEG 57

Query: 61  DLHVLLASATQRKLEDISHIVFL------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
               L+A   Q   + ++ + F       +     SA R V+P  L+     + S + QR
Sbjct: 58  IGTALMAYLDQP--DRLAPLFFEGPAAAPVGGFIGSAFRPVLPWFLVPFALVLLSIVGQR 115

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V   + ++P   R+S+    K  +    L  F KSFVK+ L    + + L+     M+
Sbjct: 116 AMVFAPSKLEPKLSRISIVSNAKNKFGRAGLFEFFKSFVKLSLYSVCLGVYLSHRLPEMI 175

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                 P S++        + L + L+    + V+D  + + +   K  MS++EI+DE+K
Sbjct: 176 ASSGTGPQSVVLMLAQLSMEFLFLALIIALAIGVVDAAFQHAEHLRKNMMSRKEIQDEMK 235

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G+P +K++++   +     +M+    +A ++I NPTHYA+AL++ +    APV VAK
Sbjct: 236 DAEGDPHMKSQRRQRGQQIAMGQMLADVPKADVVIVNPTHYAVALQWSREPGAAPVCVAK 295

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G + IA  +R++A E+ IPI  +P  AR+L   + I   I    Y  VA  I
Sbjct: 296 GVDEIAAAIRRVANENAIPIHSDPPTARALHAAIGIGDEILEEHYAPVAAAI 347


>gi|313901501|ref|ZP_07834951.1| type III secretion exporter [Thermaerobacter subterraneus DSM
           13965]
 gi|313468239|gb|EFR63703.1| type III secretion exporter [Thermaerobacter subterraneus DSM
           13965]
          Length = 407

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 131/227 (57%)

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P ++RV+   G++R+ S   LV  +K+ VK+ ++   +  +L      ++    A   ++
Sbjct: 108 PRWERVNPLAGLQRLVSRRALVELLKAPVKLAVMAAALGPALLGAGMQLITATGAPLPAM 167

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L  A  +++ +L    L    + + D  + + +    L+M+ QE K + K++ G+P+++ 
Sbjct: 168 LGLAGRSLQGLLWRGALAYLVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQ 227

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R +   R   R +M++   RA +++TNPTH A+ALRY      APV+VAKG + +A ++R
Sbjct: 228 RIRQRQRHLARRRMLQEVPRADVVVTNPTHVAVALRYDPARMGAPVVVAKGVDFLALRIR 287

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A +H +P+ EEP+LAR+L++ V +   IP  FY AVA+++  ++ 
Sbjct: 288 ALAEQHGVPVMEEPALARALYRAVEVGREIPAAFYVAVAEVLAFVWR 334


>gi|238762378|ref|ZP_04623349.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638]
 gi|238699363|gb|EEP92109.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638]
          Length = 377

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 176/350 (50%), Gaps = 13/350 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS N     K+E P+S K+  A  +G+ P S++ ++ + ++  L+ L  F     Y    
Sbjct: 1   MSSNSG--EKSEKPTSGKLLKARKKGDIPRSKDVTMAAGLVTSLVTLTLFLP--YYKELI 56

Query: 61  DLHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-L 118
               L    T  +++D + +   LLT+LS+         LL      + S L   +P   
Sbjct: 57  GESFLAVGRTAGRIDDPAALEQLLLTNLSI-----FFKFLLTLTPIPLVSILATLVPSGW 111

Query: 119 NLNHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           N   VK  P FK++S   GIK+I+S +N    +K   K  +V   + + +  +   +L  
Sbjct: 112 NFTPVKLIPDFKKLSPLAGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVNSSLVDLLRL 171

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            +      +   F     +L+  +  I     +DI  S + +  K+KM+KQE+K E K +
Sbjct: 172 QALPLQEAITEGFILYHGILVYFIAIIVIFAAIDIPLSKYLFTKKMKMTKQEVKLEHKSN 231

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP IKNR + + R     ++ +    A +IITNPTH+++AL+Y   +  AP ++AKG+
Sbjct: 232 DGNPEIKNRVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGK 291

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + IA  +R IA  ++I I E P LAR+++    +N  +P   Y+A+AQ++
Sbjct: 292 DDIALYIRTIAKNNDIEIVEFPPLARAIYHTTKVNQQVPIQLYRAIAQVL 341


>gi|159045796|ref|YP_001534590.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12]
 gi|157913556|gb|ABV94989.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12]
          Length = 362

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 171/353 (48%), Gaps = 13/353 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+++PD+K    S KK+ DA  +G    S +  + +     LI  L F   G  ++++
Sbjct: 1   MSEDESPDDKPFEASEKKLLDARKKGELVKSTDL-IATGSYGGLILGLVFAGAGTLTISA 59

Query: 61  -DLHVLLASATQRKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
             +  LL  A     E      S I   L   ++ A  L      L M+  I S ++QR 
Sbjct: 60  ATMQGLLREADTLAPELFAGGASSISLTLILGTVGALSLW---FFLPMLGAIASLVLQRA 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V     ++P   R+S+    K  +    L  F+KS  K+++   ++ +       TM+ 
Sbjct: 117 LVFAPTKLEPKLNRISILSNAKNKFGREGLFEFLKSTFKLVVFSILLGLLFMYELDTMIS 176

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTV--LDIGWSYHQWYSKLKMSKQEIKDEI 233
             +    +I+   F+ +  +  + L+F+ATL +  +D  W   Q   K +MS+QE+ DE 
Sbjct: 177 LAAQPVSAIIGFVFYLL--IEFLALVFLATLLIGGVDYIWQRAQHLRKNRMSRQEVVDET 234

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G+P  K  ++  A      +M+     A++++ NPTHYA+AL++ +    AP++VA
Sbjct: 235 KSAEGDPHSKQYRRQRAIEIATQQMLADVPDASVVVVNPTHYAVALKWDRFSPTAPIVVA 294

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            G + +A  +R+ A E  +PI  +P  AR+L+    +   IP   +KAVA  I
Sbjct: 295 SGVDHVAAAIRQRAQEAGVPIHRDPPTARALYATCKLGQEIPRAQFKAVAAAI 347


>gi|315179661|gb|ADT86575.1| flagellar biosynthetic protein FlhB [Vibrio furnissii NCTC 11218]
          Length = 376

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 181/352 (51%), Gaps = 13/352 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           MS+  +  +KTE  S +K++ A  +G  P ++E   F++ +  L   ++F++  P I+  
Sbjct: 1   MSDQASSQDKTEKASPQKVKKAREQGQIPRAKE---FTTAVIFLAVAVYFYAQLPAIWQS 57

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +     S T+  L++   ++  L H       L++P  L+ ++  + S +I    + 
Sbjct: 58  IAGVFRYNLSLTRADLDNPMQMIEQLGHSLGMVIELLLPMFLVIIVVTLASSMILGGWLF 117

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              ++ P   +++   GI RI+S  +LV  +KS +K+ ++  ++   L  +   ML  + 
Sbjct: 118 RPANLLPKLSKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLG-MQ 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             P   L   F  +  +L   LL +        V+DI +   +   +LKM+KQE+K+E K
Sbjct: 177 GLP---LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYK 233

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G P IK R + I +   R ++ +   +A ++I NPTHYA+AL+Y    +DAP +VAK
Sbjct: 234 NNEGRPEIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAK 293

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G +  A  ++++A ++ + I   P L RS++    I  A+P   Y AVA ++
Sbjct: 294 GVDETALHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHIL 345


>gi|229178177|ref|ZP_04305548.1| Flagellar biosynthetic protein [Bacillus cereus 172560W]
 gi|228605307|gb|EEK62757.1| Flagellar biosynthetic protein [Bacillus cereus 172560W]
          Length = 348

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|163939579|ref|YP_001644463.1| flagellar biosynthesis protein FlhB [Bacillus weihenstephanensis
           KBAB4]
 gi|163861776|gb|ABY42835.1| type III secretion exporter [Bacillus weihenstephanensis KBAB4]
          Length = 348

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 178/344 (51%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|307293817|ref|ZP_07573661.1| type III secretion exporter [Sphingobium chlorophenolicum L-1]
 gi|306879968|gb|EFN11185.1| type III secretion exporter [Sphingobium chlorophenolicum L-1]
          Length = 379

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 179/362 (49%), Gaps = 24/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    KTE P++KK++DA  +G+   SR+ +    ++A + ++     P   SV  
Sbjct: 1   MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVT-GP---SVVR 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSL-SASRLVIPGLLLFMMFGI--GSYLIQRIPV 117
            L  +L  A + + EDI +        +L S   L + G++L  +     G  L+  +  
Sbjct: 57  SLSDMLTEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPALLGSLG- 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTM 173
                  P   +++   G+KR++ +  L+  +KS  K+ L+G I    I   LTE     
Sbjct: 116 FRPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSIAKVSLLGAIGVWMIWDRLTE----- 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEI 229
              I     S L  A   +  + IM  L +A     +  +D+     Q   +L MSKQEI
Sbjct: 171 ---IVGLGKSGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEI 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           KDE K+S G+P +K   +      +     +A + A++IITNPTH+A+ALRY   ++ AP
Sbjct: 228 KDEHKESEGSPELKGHIRRKQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V+VA+G + IA  +R++A ++ + + + P LAR+++        +    Y AVA ++  +
Sbjct: 288 VVVARGCDAIAAAIRELADQNGVTVLQYPDLARAIYFTSRAGQIVNEGLYMAVATVLAFV 347

Query: 350 YH 351
           + 
Sbjct: 348 FR 349


>gi|85706162|ref|ZP_01037257.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217]
 gi|85669326|gb|EAQ24192.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217]
          Length = 362

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 169/349 (48%), Gaps = 13/349 (3%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            E D  +   EA S  K+++A  +G    S + +   S    L+ LL    P   +  ++
Sbjct: 3   GEEDESEKPHEA-SQNKMDEARKKGEIARSADLNTAGSYGGLLLALLALGGPVSQTTGAN 61

Query: 62  LHVLLAS--ATQRKLEDISH----IVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQR 114
           L VLL    A    L    H    +  +LT ++L+ S L ++P  +  +     + + QR
Sbjct: 62  LAVLLGQPHAFADLLFQGGHASAALGTVLTKVALAVSALFLLPAAVTLL-----TVIAQR 116

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V+  + ++P   R++  E  K  +  + L  F KS  K+ L   ++ + L+     M+
Sbjct: 117 AFVIAPSKLEPKLSRINPIENAKNKFGASGLFEFGKSIAKLSLYCILLGLFLSYRMSEMV 176

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             + A P  I       + + L+++LL    +   D  W + +   + +MS  E++DE K
Sbjct: 177 GALHAEPAMIGVMIGQLIIEFLLVVLLITLAVGAADFTWQFFEHLRRQRMSHMELRDEFK 236

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           Q+YG+P +K + +         +MM     + ++I NPTHYA+AL++ +    AP+ VAK
Sbjct: 237 QNYGDPAVKQQHRRRGMDIASRQMMAEVPGSDVVIVNPTHYAIALKWSRAPGAAPICVAK 296

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           G + IA  +R +AYE  +P+ ++P+ AR+L     I   I P +Y AVA
Sbjct: 297 GVDHIALAIRDLAYESGVPVQQDPATARALHATTEIGQEIDPTYYAAVA 345


>gi|46562156|ref|YP_009141.1| hrpY/hrcU family type III secretion protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46447693|gb|AAS94359.1| type III secretion protein, hrpY/hrcU family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235485|gb|ADP88338.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris RCH1]
          Length = 346

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 166/338 (49%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P+ K++ +A  +G+   S++     ++LA   Y  F    G     S + V   S
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAF---AGESIFASLMEVTELS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                +     +  L T +  +A  +V+P + L MM      L Q   +       P  +
Sbjct: 60  MRHMAMPFDEALPLLGTAVVHAAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +S  +  K+++S+ N V  +K+ +K+ ++G  +   ++++   +      +   +L   
Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLKVL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +++M  +    +  LD  +   Q+  +  M+K E+K E K+  G+P IK ++K 
Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +    +    +A +I+TNPTH+A+AL Y +     PV++AKG+ L+A++M +IA 
Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  IP+ +   LARSLF +   N+ IP      VA+++
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVL 337


>gi|47565438|ref|ZP_00236479.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241]
 gi|47557428|gb|EAL15755.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241]
          Length = 348

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|238916767|ref|YP_002930284.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC
           27750]
 gi|238872127|gb|ACR71837.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC
           27750]
          Length = 372

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 180/357 (50%), Gaps = 18/357 (5%)

Query: 5   DAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           D P   KTE  +SKK++D   EG    S+E     S++   I +  +    I +   D  
Sbjct: 16  DGPGGEKTEPATSKKLDDVRKEGQVAKSKELITAVSLMTLFIIIKIYVG-NIGTKLIDSF 74

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVI-------PGLLLFMMFGIGSYLIQRIP 116
             +     + ++D S  V +    S+++    I         ++  ++  +G+ L QR  
Sbjct: 75  KTIYGLMGKVIDDSSKGVTVNMAASIASQAFTIILNAVIPILIIAVIIAILGNALQQRW- 133

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           ++    + P   +++   G KR++S+  L   +K+   + ++  ++   + +N   +L F
Sbjct: 134 MVTAKPLAPKASKINPLNGFKRLFSVRQLFELLKAIAMMSIIVIMVYNCVKKNMNILLTF 193

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIKDE 232
                   LY A  TV  ++I + + I+ +      +D+ +  H++ +   M+KQE+KDE
Sbjct: 194 YDVT----LYTALATVGNIIINLGIQISAVFLVVGFVDLLYQRHKFKNDNMMTKQEVKDE 249

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + G+P +K + +   +   R +MM+    A ++ITNPTH+A+AL+Y   E  APV++
Sbjct: 250 FKNAEGDPQVKGQIRRKMQEISRRRMMQQLPEADVVITNPTHFAVALKYEPDEGKAPVVI 309

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           AKG + +A +++  A E+NI I E   LAR L+  V I + IPP  Y AVA+++  +
Sbjct: 310 AKGADYLAFQIKDRAKEYNIAIVENKPLARILYHNVDIGTEIPPELYYAVAEILASV 366


>gi|242280058|ref|YP_002992187.1| flagellar biosynthesis protein FlhB [Desulfovibrio salexigens DSM
           2638]
 gi|242122952|gb|ACS80648.1| type III secretion exporter [Desulfovibrio salexigens DSM 2638]
          Length = 353

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 180/360 (50%), Gaps = 37/360 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL---------------LFFFSP 53
           +KTE  + K+I+ A  +G+     E     +++A +I L                +FF+ 
Sbjct: 6   SKTEKATPKRIDKARKDGSVAKGEEMGKIMTLIAGVICLRAIMDMYYEQFYEIFQWFFTK 65

Query: 54  GIY--SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
           GI+       ++ L    +Q+    +  +   +  ++    RL +  L    +F      
Sbjct: 66  GIFIDLDKQSVYQLFQWCSQKLALILLPLFLFIAFIAFLVLRLQVGKLWTTKVF------ 119

Query: 112 IQRIPVLNLNHVKPSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                       KP F ++ +L +G KR I+++  ++  +KS +  I+VG    I +   
Sbjct: 120 ------------KPKFSKMFNLVQGFKRLIFNVKTIIRLVKSLLFAIIVGIAPYIIIKNE 167

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
               L    ++ H +  +      K++   +L +  L + D+ +  + +  ++KM+K E+
Sbjct: 168 VGNFLPLFYSSAHELAIYMLQIGYKMVTYTMLPMLVLALADLWYQRYNYQEEMKMTKDEV 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           KDE KQ+ G+P IK +QK    + ++ +MM     A ++ITNPTHYA+AL+Y      AP
Sbjct: 228 KDERKQAEGDPKIKQQQKQKMMAILQQRMMAEVPNADVVITNPTHYAIALKYDPMVAPAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +++AKG N +A++++++A E+ +PI E   LA++L+KQV I   IP   YKAVA ++ K+
Sbjct: 288 LVLAKGMNKVAERIKEVARENKVPIRENKPLAQALYKQVEIGDIIPEELYKAVAAILAKL 347


>gi|89069813|ref|ZP_01157148.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus
           HTCC2516]
 gi|89044614|gb|EAR50730.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus
           HTCC2516]
          Length = 359

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 6/349 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS +D  D   E P+ KK++DA  +G+ P S + +  ++    L+  L      +  + S
Sbjct: 1   MSHDDGADKSFE-PTQKKLDDARRKGDLPRSADLTTAAAYAGFLLAALALGGGVVDGMGS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  L+  A     E  +      +  + L+A+  + P LL      + + + QR  V  
Sbjct: 60  LLRALVERADALSAEMFAGGAAPRSGAVILAAAGALAPILLGPAAAALVAVIAQRGLVFA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + + P   R+S     K+ +    L  F KSF K+ +    + + L+     ++  I  
Sbjct: 120 PSKLAPKLSRISPLSTAKQKFGRTGLFEFAKSFAKLTIYSITLGLFLSARLPDIVGTIGM 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  I       +  +L++++L  A +  LD+ +       K +MS++E+ DE+KQS G+
Sbjct: 180 APAIIAGELLRLMLDLLLVVVLIAAAIGALDLLFQRADHLRKNRMSRKEVTDEMKQSEGD 239

Query: 240 PIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           P +K   RQK++A +    +MM     A ++I NPTHYA+AL++ +    APV VAKG +
Sbjct: 240 PAMKQQRRQKAVAIATT--QMMADVPTADVVIVNPTHYAVALKWDRGSPGAPVCVAKGVD 297

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            IA ++R++A EH IP+  +P  AR+LF +  I + I P  Y+AVA  I
Sbjct: 298 AIAARIRELALEHVIPLHSDPPTARALFAETEIGAEIHPDHYRAVAAAI 346


>gi|126734112|ref|ZP_01749859.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2]
 gi|126716978|gb|EBA13842.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2]
          Length = 361

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 172/355 (48%), Gaps = 16/355 (4%)

Query: 1   MSENDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-FSP-GIYS 57
           MS  +  D +K   PS KK++DA  +G   I+R A L ++     + L      P  +  
Sbjct: 1   MSGQEEEDSDKQYEPSQKKLDDARKKGE--IARSADLTTAAAYAGLLLAMLTIGPVALLD 58

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL------VIPGLLLFMMFGIGSYL 111
           +++ L +LL  +      D+S + F     +L    L      V P   +  +  I S +
Sbjct: 59  LSTSLSILLEQSN-----DLSSLAFAGGGTALHGGILREVAWGVAPWFAVPAVLAIVSVI 113

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
           +QR  +   + + P   R+S   G+K  +    L  F KS  K+ +   ++   L     
Sbjct: 114 LQRGFLFTGSKLVPKLNRISPISGVKNKFGRQGLFEFAKSSTKLTIYCVVLGFFLVGQIE 173

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            ++  +   P  I+      +  ++ ++LL    L  +D  W   +   K +MS++E+ D
Sbjct: 174 RIIGSMQLPPRLIIAELGHMLLALMGIVLLISLALGTIDFLWQRAEHTRKNRMSRKEMMD 233

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E+KQS G+P IK +++        +KM+     A ++I NPTHYA+AL++ +++  AP+ 
Sbjct: 234 ELKQSEGDPFIKQQRRQRGHDIATNKMLLDVPTADVVIVNPTHYAIALKWDRSQAMAPIC 293

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           VAKG + +A ++R+IA E  +P+  +P  AR+L  +V +   I    Y+AVA  I
Sbjct: 294 VAKGVDEVAARIREIAAESAVPMHSDPPTARALHAEVTLGQEISQHHYRAVAAAI 348


>gi|254511494|ref|ZP_05123561.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           KLH11]
 gi|221535205|gb|EEE38193.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           KLH11]
          Length = 362

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 31/348 (8%)

Query: 15  SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT--SDLHVLLASATQR 72
           + +K+E A  +G    S + S+ ++     I LL   + G Y+      L V+L      
Sbjct: 15  TPQKLEKARKKGEVAKSNDLSVVAAYAGLFIALL---TAGQYTAQNLGTLFVVL------ 65

Query: 73  KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------------QRIPVLNL 120
            ++    I  LLT      + + + G+L   M  + +  I            QR  V   
Sbjct: 66  -IDQSDQIATLLTQ---GPAVVPVAGMLKAAMVPVSALFIVPAAAVLLSLIAQRALVFAP 121

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP   R+S+    K  +    L  F KSFVK+++ GT + + L  +   +L   SA 
Sbjct: 122 SKLKPRASRISIPSNAKNKFGRGGLFEFAKSFVKLLIYGTCLALFLQAHLPEILT-ASAA 180

Query: 181 P--HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           P   SIL       R + I+I + +A + ++D  W + +   K +MS++E++DE K S G
Sbjct: 181 PARSSILLMMTLLTRFLFIVITIALA-IGIVDYLWQHAEHMRKNRMSRKEVQDETKDSEG 239

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K +++  A+    ++MM    +A ++I NPTHYA+AL++ +    APV VAKG + 
Sbjct: 240 DPHVKQQRRQRAQEIAANQMMADVPKADVVIVNPTHYAVALKWSREAGSAPVCVAKGVDE 299

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A  +R  A +  +PI  +P  AR+L   V I   +   +Y+ VA  I
Sbjct: 300 VAATIRATADDAGVPIHSDPPTARALHATVEIGQEVTEEYYRPVAAAI 347


>gi|94968667|ref|YP_590715.1| type III secretion exporter [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550717|gb|ABF40641.1| type III secretion exporter [Candidatus Koribacter versatilis
           Ellin345]
          Length = 351

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 183/353 (51%), Gaps = 14/353 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE P+ ++ + A  +G    SRE     +I+  L+++L   S  +++       L
Sbjct: 2   ADSSKTEQPTQQRRKKAREKGQVARSRELPGALTIIVVLVWILSLNSVALFTWRGFYRSL 61

Query: 66  LASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           L  A    L++++    LL   + ++A   V+P L  F +    S L+Q   V +   + 
Sbjct: 62  LQQAA---LQELTLSPALLQKTIWVAAQWTVVPMLGAFAI-ATASTLLQGGFVFSSEALA 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF----ISAN 180
              +R+S    +K+I+S   L N +KS +    +  +    +   + T +      ++  
Sbjct: 118 WKPERLSPGHRLKQIFSAAGLSNTLKSLLPFAAILWLAVSQIRSEWVTFIRLGGLPVARI 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L      V K  +++LL+    + LD      +    LKMS++EIK E K+S GNP
Sbjct: 178 GSWLLAQCVALVWKCCLVLLLW----SALDYLLQRQRLEGDLKMSREEIKQEFKESEGNP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   R +M+ A   AT+++TNPTHYALAL Y + +  APVLVAKG + +A
Sbjct: 234 QVKAKIRRMQRQVRRQQMLHAVKAATVVVTNPTHYALALEY-RPDFAAPVLVAKGLDRLA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++++A  H IP+ E  +LA +L++ V +  AIP   + AVA+++  +Y  +
Sbjct: 293 EEIKQVAIWHEIPLVENRALAHALYRSVEVGQAIPSKLFTAVAEVLAAVYRAQ 345


>gi|317177398|dbj|BAJ55187.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F16]
          Length = 358

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E             I    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLTIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|300982207|ref|ZP_07175919.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS
           200-1]
 gi|300307277|gb|EFJ61797.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS
           200-1]
          Length = 247

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 127/215 (59%)

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++S       +K+ +K ILVG++    L  ++  M+  ++ +P + + +A   V    ++
Sbjct: 1   MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 60

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           ++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K R + + R+  R +M
Sbjct: 61  VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 120

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           M    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R+I  E+N+P  E P
Sbjct: 121 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 180

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215


>gi|229078951|ref|ZP_04211503.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2]
 gi|228704365|gb|EEL56799.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2]
          Length = 348

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|324325787|gb|ADY21047.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 348

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +++  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYMMGMLLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|229121321|ref|ZP_04250552.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201]
 gi|228662166|gb|EEL17775.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201]
          Length = 348

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +++  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|120586865|ref|YP_961210.1| YscD family type III secretion protein [Desulfovibrio vulgaris
           subsp. vulgaris DP4]
 gi|120564279|gb|ABM30022.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris DP4]
          Length = 346

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 166/338 (49%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P+ K++ +A  +G+   S++     ++LA   Y  F    G     S + V   S
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAF---AGESIFASLMEVTELS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                +     +  L T +  +A  +V+P + L MM      L Q   +       P  +
Sbjct: 60  MRHMAMPFDEALPLLGTAVVHAAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +S  +  K+++S+ N V  +K+ +K+ ++G  +   ++++   +      +   +L   
Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFAIPDGDIGLLLKVL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +++M  +    +  LD  +   Q+  +  M+K E+K E K+  G+P IK ++K 
Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +    +    +A +I+TNPTH+A+AL Y +     PV++AKG+ L+A++M +IA 
Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  IP+ +   LARSLF +   N+ IP      VA+++
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVL 337


>gi|30261773|ref|NP_844150.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Ames]
 gi|49184607|ref|YP_027859.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Sterne]
 gi|49480930|ref|YP_035888.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143694|ref|YP_083139.1| flagellar biosynthesis protein FlhB [Bacillus cereus E33L]
 gi|65319050|ref|ZP_00392009.1| COG1377: Flagellar biosynthesis pathway, component FlhB [Bacillus
           anthracis str. A2012]
 gi|118477201|ref|YP_894352.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis str. Al
           Hakam]
 gi|165869563|ref|ZP_02214222.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0488]
 gi|167633408|ref|ZP_02391733.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0442]
 gi|167638766|ref|ZP_02397041.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0193]
 gi|170686249|ref|ZP_02877471.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0465]
 gi|170706530|ref|ZP_02896990.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0389]
 gi|177650578|ref|ZP_02933545.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0174]
 gi|190566254|ref|ZP_03019172.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033476|ref|ZP_03100888.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W]
 gi|218902883|ref|YP_002450717.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH820]
 gi|225863627|ref|YP_002749005.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB102]
 gi|227815458|ref|YP_002815467.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. CDC 684]
 gi|228914347|ref|ZP_04077962.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926805|ref|ZP_04089873.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933053|ref|ZP_04095916.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229183961|ref|ZP_04311176.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1]
 gi|229602417|ref|YP_002866162.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0248]
 gi|254683271|ref|ZP_05147132.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723854|ref|ZP_05185640.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. A1055]
 gi|254734624|ref|ZP_05192336.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741033|ref|ZP_05198721.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Kruger
           B]
 gi|254755276|ref|ZP_05207310.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Vollum]
 gi|254759812|ref|ZP_05211836.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Australia 94]
 gi|291612214|ref|YP_003541028.1| flagellar biosynthetic protein FlhB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|301053307|ref|YP_003791518.1| flagellar biosynthesis protein [Bacillus anthracis CI]
 gi|30256001|gb|AAP25636.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. Ames]
 gi|47502154|gb|AAT30830.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178534|gb|AAT53910.1| flagellar biosynthetic protein FlhB, putative [Bacillus anthracis
           str. Sterne]
 gi|49332486|gb|AAT63132.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977163|gb|AAU18713.1| flagellar biosynthetic protein [Bacillus cereus E33L]
 gi|118416426|gb|ABK84845.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164715003|gb|EDR20521.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0488]
 gi|167513230|gb|EDR88601.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0193]
 gi|167531446|gb|EDR94124.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0442]
 gi|170128628|gb|EDS97495.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0389]
 gi|170669946|gb|EDT20687.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0465]
 gi|172083722|gb|EDT68782.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0174]
 gi|190562389|gb|EDV16356.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993910|gb|EDX57866.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W]
 gi|218539660|gb|ACK92058.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH820]
 gi|225789484|gb|ACO29701.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB102]
 gi|227006512|gb|ACP16255.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. CDC 684]
 gi|228599486|gb|EEK57091.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1]
 gi|228826654|gb|EEM72425.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832918|gb|EEM78487.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845341|gb|EEM90377.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266825|gb|ACQ48462.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0248]
 gi|300375476|gb|ADK04380.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 348

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +++  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYMMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|119775419|ref|YP_928159.1| flagellar biosynthesis protein FlhB [Shewanella amazonensis SB2B]
 gi|119767919|gb|ABM00490.1| flagellar biosynthetic protein FlhB [Shewanella amazonensis SB2B]
          Length = 377

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 177/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END    +TE P+ +++E A  +G    S+E    + +LA  +  L    P +     
Sbjct: 1   MAENDTSQERTEEPTGRRLEQAREKGQVARSKELGTAAVLLAAAVGFLML-GPSLGKAMH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  +    ++ ++ D + ++ +   ++      V+  +L+         ++    + + 
Sbjct: 60  NVMTMTMVQSREQVFDTNSMLNIWIPIAKELGLPVLGLVLVLAALAFAGNIVLGGIIFSS 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N V P   ++S   G KR++ +  L+   K   K  +V  +    L   YF  +  ISA 
Sbjct: 120 NGVLPKASKMSPLAGFKRMFGLQALMELGKGLAKFSVV-AVAAYFLLSFYFPEIIQISAE 178

Query: 181 --PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             P ++ +HA   +  + +++   +  + V+D+ +       +LKM+KQE+KDE K + G
Sbjct: 179 HLPSNV-FHALDLLTWMFLLLCSSMLIIAVIDVPFQIWNHKKQLKMTKQEVKDEYKDTEG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
            P +K R + + R     +MM    +A +I+ NP H+A+AL+Y    + AP ++AKG + 
Sbjct: 238 KPEVKGRIRQMQREIAMRRMMAEVPKADVIVVNPEHFAVALKYDAKRSPAPFVLAKGVDA 297

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A K+R+IA E++I I   P LAR+++    +N  +P   + AVAQ++  ++ 
Sbjct: 298 VAFKIREIAREYDIAIVSAPPLARAIYHTTKLNQQVPEGLFTAVAQVLAYVFQ 350


>gi|307718617|ref|YP_003874149.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM
           6192]
 gi|306532342|gb|ADN01876.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM
           6192]
          Length = 387

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 10/348 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+  KI  A  EG    + E      +L  LI L    S    ++ S      +
Sbjct: 34  EGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTFFS 93

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           S +     + +H             +L +P  ++ +  G+   ++Q   +  +  + P  
Sbjct: 94  SISS---PEPTHTGRFFVLFLQFFLKLTLPFFVVALCAGVAGNVLQVGFLFTVKPITPDL 150

Query: 128 KRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--H 182
           +R+  +     KR+ +S   L N  K+ +K+  +G +  +++      +++ +   P   
Sbjct: 151 QRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRV-PLLQ 209

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I +      R +    ++F+A ++++D  +   Q    LKMS++E+K+E K   G+P++
Sbjct: 210 GIRFLGALVFRILFEATVVFLA-ISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R +   R  +   M+     A ++ITNPTHYA+AL Y +   +AP +VAKG + +A +
Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           MR IA EH +P+ E   LAR+L+++V +   IP  +Y  VA ++ K+Y
Sbjct: 329 MRAIAREHGVPLVENRPLARALYQEVEVGDTIPEQYYAVVATILAKVY 376


>gi|217972629|ref|YP_002357380.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS223]
 gi|217497764|gb|ACK45957.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS223]
          Length = 376

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 17/346 (4%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           P+ +++E A  +G    S+E    + ++  AC  Y+L    P + +  + +   + +  +
Sbjct: 13  PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127
            ++ D      +     + AS +  P   + ++  + ++ I  + +  +N     + P  
Sbjct: 70  AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185
            ++S   G+KR++ +  LV   K   K  +V     + L+  YF  +  +S++  P ++ 
Sbjct: 126 SKMSPAAGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           YHA   +  + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K R
Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGR 243

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + + R   + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+
Sbjct: 244 VRQMQRELAQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA EHNI I   P LAR+++    ++  IP   + AVAQ++  ++ 
Sbjct: 304 IAREHNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349


>gi|294013056|ref|YP_003546516.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S]
 gi|292676386|dbj|BAI97904.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S]
          Length = 392

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 180/362 (49%), Gaps = 24/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    KTE P++KK++DA  +G+   SR+ +    ++A + ++     P +    S
Sbjct: 1   MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVT-GPSMVESLS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSL-SASRLVIPGLLLFMMFGI--GSYLIQRIPV 117
           D+   L  A + + EDI +        +L S   L + G++L  +     G  ++  +  
Sbjct: 60  DM---LIEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPAMLGSLG- 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTM 173
                  P   +++   G+KR++ +  L+  +KS  K+ L+G I    I+  LTE     
Sbjct: 116 FRPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSVAKVSLLGAIGVWMISDRLTE----- 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEI 229
              I     S L  A   +  + IM  L +A     +  +D+     Q   +L MSKQEI
Sbjct: 171 ---IVGLGKSGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEI 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           KDE K+S G+P +K   +      +     +A + A++IITNPTH+A+ALRY   ++ AP
Sbjct: 228 KDEHKESEGSPELKGHIRRKQYEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V+VA+G + IA  +R++A ++ + + + P LAR+++        +    Y AVA ++  +
Sbjct: 288 VVVARGCDAIAAAIRELADQNGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFV 347

Query: 350 YH 351
           + 
Sbjct: 348 FR 349


>gi|229102368|ref|ZP_04233076.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28]
 gi|228681015|gb|EEL35184.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28]
          Length = 348

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 178/344 (51%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  +  
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASF 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|77165624|ref|YP_344149.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC
           19707]
 gi|254433995|ref|ZP_05047503.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27]
 gi|76883938|gb|ABA58619.1| Flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC
           19707]
 gi|207090328|gb|EDZ67599.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27]
          Length = 377

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 181/360 (50%), Gaps = 30/360 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ A   +TE P+ K+ E+A  +G  P SRE S    +L+  + L+    P +  +  
Sbjct: 1   MADSSA-QERTEQPTPKRQEEARKKGQVPRSRELSTTVLLLSSALGLVLIGEPLLQGLAD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP--------GLLLFMMFGIGSYLI 112
            +   L     +  E  + I+     +   A +++ P         L   ++ G  S+  
Sbjct: 60  LMRQGLQLERAQIFEPKAAILQFQQGVG-EAVKIITPFLALTLIAALAAPLLMGGWSFSA 118

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q +           +++++  +G+KRI+     +  +K+ +K +L+  +  +     +  
Sbjct: 119 QSLGF--------KWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVGCLLF---WLF 167

Query: 173 MLDFISANPHSILYHAFFTVRKV---LIMILLFIATLTVLDI---GWSYHQWYSKLKMSK 226
             D I+      +   F     +   L+ +   +A + V+D    GW++ +   +LKM++
Sbjct: 168 SPDLIALGRQPFVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQGWNHTR---QLKMTR 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+K+E K++ GNP +K R + + R     +MM A  +A +++ NPTHYA+AL Y Q + 
Sbjct: 225 QEVKEEHKETDGNPELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQ 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG + +A K+R +A  +N+P+   P+L+R+++    ++  IP   Y+AVAQ++
Sbjct: 285 GAPRVVAKGVDQVAIKIRTVAAGNNVPVLSAPALSRAIYHSTKLDQEIPAGLYRAVAQVL 344


>gi|160876164|ref|YP_001555480.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS195]
 gi|160861686|gb|ABX50220.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS195]
 gi|315268360|gb|ADT95213.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS678]
          Length = 376

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 17/346 (4%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           P+ +++E A  +G    S+E    + ++  AC  Y+L    P + +  + +   + +  +
Sbjct: 13  PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127
            ++ D      +     + AS +  P   + ++  + ++ I  + +  +N     + P  
Sbjct: 70  AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185
            ++S   G+KR++ +  LV   K   K  +V     + L+  YF  +  +S++  P ++ 
Sbjct: 126 SKMSPAAGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           YHA   +  + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K R
Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGR 243

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + + R   + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+
Sbjct: 244 VRQMQRELAQRRMMTEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA EHNI I   P LAR+++    ++  IP   + AVAQ++  ++ 
Sbjct: 304 IAREHNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349


>gi|74101643|gb|AAZ99733.1| FlhBL [Aeromonas hydrophila]
          Length = 378

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 179/349 (51%), Gaps = 14/349 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+N A D KTE  SS+K+  A  EG    S+E S    +L   + + +   P      +
Sbjct: 1   MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQWMV-PSFGHFFA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L         +   D   ++       LS   +++P      +  +   ++    VL  
Sbjct: 59  ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + PS ++++  +G+KR++S ++L+  +KS +KI+L+G+ + + L   +  ++      
Sbjct: 119 KKLLPSAEKLNPLKGLKRMFSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238
           P + +  A   + +  I++      + VLD+   Y +W    +L+M+KQE+KDE K S G
Sbjct: 179 PQAAMEQALRILSQAFILLGSVQMLIAVLDV--PYQRWSLNKQLRMTKQEVKDEHKNSEG 236

Query: 239 NPIIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            P IK +    Q  +AR+RI  ++     +A +II NPTHYA+A++Y     +AP ++AK
Sbjct: 237 RPEIKAKIRQVQGMLARARIEQRV----PQADVIIVNPTHYAVAIKYDPERANAPYVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           G + +A+++R++A +H+  +   P L R+++    ++  +P   Y AVA
Sbjct: 293 GVDGMAERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVA 341


>gi|148976240|ref|ZP_01812964.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
 gi|145964334|gb|EDK29589.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
          Length = 379

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 187/366 (51%), Gaps = 41/366 (11%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++    +K+E PS  K+  A  EG  P ++E    SSI   LI ++ ++   +  +  
Sbjct: 1   MSDHQDSGDKSEQPSQHKLTKARREGQVPRAKE--FVSSI--TLISVVAYYVLNVDMIKQ 56

Query: 61  DLHVLLASATQRKLEDISH---IVFLLTHLSLSASRLVIPGLLLFMMFG--IGSYLIQRI 115
               L   +     + +S    IV L+     S   L  P LL++ M    +GS L+   
Sbjct: 57  SFIELFLVSFHFDSQTVSQPMAIVELVGTALFSMITLFFP-LLIYQMIAAIVGSTLLGGW 115

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            + + + + P ++++S  +G+KRI+S  ++V   K+ +K+ L  T++       Y+ +  
Sbjct: 116 -IFSPSLLIPKWEKISPLKGLKRIFSSQSIVELFKNVIKVSLFFTLL-------YWVISS 167

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTV---------------LDIGWSYHQWYS 220
           +IS   + +  H F TV       +L +AT+T+                D  +  H++  
Sbjct: 168 YISVITNLVSAH-FDTV-------VLSVATITIEYLGYLLLIVLLFGLFDFPYQRHEFTK 219

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           ++KM+KQE+KDE K+  G P +K R + I     +    E   +A++++TNPT YA+AL 
Sbjct: 220 QMKMTKQEVKDEHKEQEGRPEVKARIRQIQTQNAKRSANERVPKASVVLTNPTRYAIALI 279

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y  ++ +AP +VAKGQ+ +A  +R++A +H + I E P+L R+++    I+  +P   + 
Sbjct: 280 YDLSQAEAPFVVAKGQDDVALYIRELAAKHEVEIVESPALTRAIYNTTQIDQMVPNQLFI 339

Query: 341 AVAQLI 346
           A+A ++
Sbjct: 340 AIAHIL 345


>gi|310820310|ref|YP_003952668.1| type III secretion protein hrpy/hrcu family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393382|gb|ADO70841.1| Type III secretion protein HrpY/HrcU family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 353

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 175/361 (48%), Gaps = 32/361 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIY-SVTSDLHVL 65
           D KTE PS KK++DA  +G    S++      +    ++L+   +  G++ ++  +L  L
Sbjct: 3   DEKTEEPSQKKLDDARKKGQVWKSKD------LTGVFVFLVGLGAVKGMWDTIVEELKTL 56

Query: 66  -------------LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
                        L+ AT   +    H V  LT   + A   VI GL+ F+  G      
Sbjct: 57  FLFTFQYISQPEELSRATSNAMSMAVHTVLFLTA-PIVAGGAVIAGLVEFLQVG------ 109

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
               +  ++ + P  ++++  +GIK I+S   +V  +K+ VKI +   ++   + +    
Sbjct: 110 ---ALFTMDPLIPKLEKLNPIQGIKNIFSKKTVVEMIKNLVKISVAAYVVFGVVRDMLDM 166

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           ++  +  +   +L      V +V   + L     ++ DI W    +  ++ MSK ++K E
Sbjct: 167 LVQTVRMDTSGLLAVMGEMVYRVCTRVALVFLLFSIFDIWWQRKAFMKEMMMSKDDVKKE 226

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K+S G+P  K  +K + +  +    MEA   A +I+TNP H A+AL+Y + ++ AP ++
Sbjct: 227 YKESEGDPHHKAHRKQMHQEIMEGAQMEAVKDADVIVTNPDHVAVALQYDRDKDAAPRVL 286

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG +  A++++ IA E ++P      LA +L + V +   IP   Y AVA+++  +Y  
Sbjct: 287 AKGIDFKAERIKAIARESDVPTLRNVPLAHALLR-VDVGQDIPEELYDAVAEVLNFVYGL 345

Query: 353 K 353
           K
Sbjct: 346 K 346


>gi|317180535|dbj|BAJ58321.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F32]
          Length = 358

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSS-------ILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E             I    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFIDLIIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|32471372|ref|NP_864365.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1]
 gi|32443213|emb|CAD72044.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1]
 gi|327537626|gb|EGF24338.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica WH47]
          Length = 360

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 189/367 (51%), Gaps = 30/367 (8%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+  +K  + S +K   A  +G    S++ +  + +LA +  L        Y++  ++ 
Sbjct: 2   SDSGGDKKHSASERKRRQAREKGQIAKSQDLTSATLLLAAIGAL--------YAIGGNMA 53

Query: 64  VLLASATQRKL----------EDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLI 112
             L+   ++ L          +D +  +  ++  L+++A    +P ++L  + G+   + 
Sbjct: 54  AYLSGGIEQALGETKLAPMTNQDATQYMLQISQRLAMAA----VPMMILMFIGGVLINVF 109

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q   +L+ + + P    +S   G KRI S+  ++  +    K+ ++G I  ++L  ++  
Sbjct: 110 QSGLLLSTDKLMPKLSNISPMSGAKRILSLQGVMRLVFGMFKVGIIGGIAYLALRAHHGD 169

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK--LKMSKQEIK 230
           ++   S +   +    F T+  V + I + +  L +L+  + Y  W ++  L M+ QE++
Sbjct: 170 VISMASLSVPQLAKSMFDTLFGVSLWIGVGLFVLALLE--YVYQWWKTEQDLMMTDQEVR 227

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE+K +  +P +  R++ +AR     ++     +A ++ +NPT  A+A++Y      AP+
Sbjct: 228 DEMKDTEADPQVAARRRQVARQLAMGQLGSEVPKADVVASNPTELAIAIKYDPLTMPAPI 287

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IY 347
           +VAKG  +IA+++R++A E+ IP+ E   LA++L+K V +   +P   Y+AVA++   +Y
Sbjct: 288 VVAKGAGMIAQRIRRLALENGIPVVERKELAQALYKLVDVGQEVPAEQYQAVAEILRYVY 347

Query: 348 KIYHKKI 354
           ++  KK+
Sbjct: 348 QMQGKKV 354


>gi|91223202|ref|ZP_01258468.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
 gi|269967109|ref|ZP_06181176.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B]
 gi|91192015|gb|EAS78278.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
 gi|269828246|gb|EEZ82513.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B]
          Length = 375

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 180/357 (50%), Gaps = 24/357 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58
           MS+  + D KTE  S +K++ A  EG  P ++E   F++ +  L   L+F+S    I+  
Sbjct: 1   MSDQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVALYFYSQLNSIWES 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            S +       T+  LE+   +V  L         +++P   + ++   GS L+    + 
Sbjct: 57  MSGIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              +V P   +++   GIKRI+S  ++V  +KS  K+ ++  I+   L +N+   L  + 
Sbjct: 117 RPANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYL-DNHLQPLLGMQ 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSKQEI 229
             P   L   F      L+M +LF         +    V+DI +   +   +L+M+KQE+
Sbjct: 176 NLP---LSQGF-----SLVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQEL 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E K + G P +K R + I +   R K+ +    A +IITNPTHYA+AL+Y  + +DAP
Sbjct: 228 KEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 288 FVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344


>gi|228907402|ref|ZP_04071260.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200]
 gi|228938882|ref|ZP_04101482.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228964753|ref|ZP_04125860.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971763|ref|ZP_04132384.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978372|ref|ZP_04138749.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407]
 gi|228781389|gb|EEM29590.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407]
 gi|228787853|gb|EEM35811.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228795003|gb|EEM42502.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228820731|gb|EEM66756.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228852263|gb|EEM97059.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200]
 gi|326939382|gb|AEA15278.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 348

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 179/341 (52%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|256833222|ref|YP_003161949.1| type III secretion exporter [Jonesia denitrificans DSM 20603]
 gi|256686753|gb|ACV09646.1| type III secretion exporter [Jonesia denitrificans DSM 20603]
          Length = 380

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 186/363 (51%), Gaps = 45/363 (12%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    +TE  + K+++D   +G+   S++ S ++ I A    L F F   +     D  
Sbjct: 3   DDQSQERTEEATPKRMKDVRKDGSLQKSQDLSAWAGIGAGTAVLPFVFG-NVEKHIED-- 59

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--LLFMMF-------GIGSYLIQR 114
           VL+  +T     D   +V +L   +L+    ++P L  LL ++F       G+G Y I  
Sbjct: 60  VLMNISTIASTPDPLLVVPMLGD-ALAG---ILPALAPLLAVVFIAAILANGVGGYYIAT 115

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                   +KP+FK+ +L +G+K+ + +  L   +K+ +K +++G ++       Y  + 
Sbjct: 116 ------KKLKPTFKQFNLIKGMKQKFGMQALWQGVKALLKTVVIGAVL-------YLLIQ 162

Query: 175 DFISANPHSILYHAFFTVRKVL------IMILLFIA-----TLTVLDIGWSYHQWYSKLK 223
             I      I      T+R VL       M L++ A      L +LD+     +   K K
Sbjct: 163 GMIPV----IQQSGALTMRAVLGYASEKFMQLMWTAVAAGIALAILDVVVVMKRNRKKTK 218

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M+K+EIKDE K + G+P++K   +S   +  R++M+ + + A +++ NPTH A+AL Y+ 
Sbjct: 219 MTKKEIKDENKNTEGDPLLKGAIRSRQLAMSRNRMIASVADADVVVVNPTHVAVALTYVA 278

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E  AP LVAKG+NL+A+++R+ A  H++P+  +  LAR+L     I   IPP  + AVA
Sbjct: 279 GEG-APKLVAKGKNLVAQRIREEAEAHDVPLVRDIPLARALNAHCEIGHPIPPALFTAVA 337

Query: 344 QLI 346
           Q++
Sbjct: 338 QVL 340


>gi|229166624|ref|ZP_04294376.1| Flagellar biosynthetic protein [Bacillus cereus AH621]
 gi|228616878|gb|EEK73951.1| Flagellar biosynthetic protein [Bacillus cereus AH621]
          Length = 348

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 178/341 (52%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|302338096|ref|YP_003803302.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM
           11293]
 gi|301635281|gb|ADK80708.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM
           11293]
          Length = 379

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 182/351 (51%), Gaps = 16/351 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL--IYLLFFFSPGIYSVTSD-LHV 64
           + +TE P+ +KI  A  EG    S E   F+S L  L  I  L   +P ++    + L  
Sbjct: 30  EGRTEDPTEQKIRKAREEGKVAKSSE---FTSSLVLLFPIVALGILAPRMFGTMEEMLRY 86

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L+  ++  L     + F    + L A    +   +   +FG    +IQ   +     + 
Sbjct: 87  YLSLLSEADLTGEQIVAFFRYFIRLVAPVASV--AVAAALFG---NIIQVGFLFTSKPIT 141

Query: 125 PSFKRVSLREG--IKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P F ++  R G  I+R + S   L N MKS +K++++G I  I++  N      F++A P
Sbjct: 142 PDFSKIVPRFGKFIQRSFLSGEALFNLMKSILKVLIIGIIAYINIKNNLDIFAFFVNA-P 200

Query: 182 HSILYHAFFTVR-KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +    +V  ++L+   + +  L++ D  +   Q    LKM+KQEIK+E K   G+P
Sbjct: 201 FEVAFSTIGSVAFRILVESSIALLALSLPDYLFQRRQHRESLKMTKQEIKEERKTMEGDP 260

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+R +   R  +   M+     A +IITNPTH+A+ + + +    AP+++AKGQ+ +A
Sbjct: 261 LIKSRLRERMRDVLNRNMIRKVPEADVIITNPTHFAVGMEWERERMVAPMVIAKGQDNMA 320

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++++ IA EH++PI E   LAR+L+ +V +   IP  +Y+ +A ++ ++Y 
Sbjct: 321 QRIKAIAREHDVPIVENKPLARALYAEVEVGEVIPERYYEVMATILAEVYR 371


>gi|120598263|ref|YP_962837.1| flagellar biosynthesis protein FlhB [Shewanella sp. W3-18-1]
 gi|120558356|gb|ABM24283.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
 gi|319427058|gb|ADV55132.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens 200]
          Length = 376

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 172/344 (50%), Gaps = 13/344 (3%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    +++L       +   PGI +  S +   + +  + +
Sbjct: 13  PTGRRLEQAREKGQVARSKELGT-AAVLLSAATGFYMLGPGIATALSHVFERVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSFKR 129
           + D +    +     L A  +  P L + ++  + ++ I  + +  +N     + P   +
Sbjct: 72  IYDTNQ---MFNVWGLVAGEIAWPMLKIMLLIVVVAF-IGNVSLGGMNFSTQAMMPKASK 127

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187
           +S   G KR++ +  LV   K   K  +V       L   YF  +  +S++  P ++ +H
Sbjct: 128 MSPLAGFKRMFGVQALVELTKGIAKFSVV-AFSAYFLLSYYFNDILLLSSDHLPGNV-HH 185

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   +  + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R +
Sbjct: 186 ALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R   + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A
Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVA 305

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            E+NI I   P LAR+++    ++  IP   + AVAQ++  ++ 
Sbjct: 306 REYNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQ 349


>gi|254228807|ref|ZP_04922230.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262396474|ref|YP_003288327.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
 gi|151938754|gb|EDN57589.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262340068|gb|ACY53862.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
          Length = 375

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 180/357 (50%), Gaps = 24/357 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP--GIYSV 58
           MS+  + D KTE  S +K++ A  EG  P ++E   F++ +  L   L+F+S    I+  
Sbjct: 1   MSDQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFLAVALYFYSQLNSIWES 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            S +       T+  LE+   +V  L         +++P   + ++   GS L+    + 
Sbjct: 57  MSGIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              +V P   +++   GIKRI+S  ++V  +KS  K+ ++  I+   L +N+   L  + 
Sbjct: 117 RPANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYL-DNHLQPLLGMQ 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLF---------IATLTVLDIGWSYHQWYSKLKMSKQEI 229
             P   L   F      L+M +LF         +    V+DI +   +   +L+M+KQE+
Sbjct: 176 NLP---LSQGF-----SLVMSILFEGLLLMGFALLLFGVVDIPYQRWEHLKELRMTKQEL 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E K + G P +K R + I +   R K+ +    A +IITNPTHYA+AL+Y  + +DAP
Sbjct: 228 KEEFKNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +VAKG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 288 FVVAKGVDETAMHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344


>gi|332526006|ref|ZP_08402146.1| Translocation protein in type III secretion [Rubrivivax
           benzoatilyticus JA2]
 gi|332109851|gb|EGJ10479.1| Translocation protein in type III secretion [Rubrivivax
           benzoatilyticus JA2]
          Length = 387

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 167/354 (47%), Gaps = 20/354 (5%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            +ND  D KTE P+ KK++DA  +G    SR+    SS +  L +L        Y+    
Sbjct: 3   DKNDGGD-KTEKPTPKKLQDARRKGQVSKSRD---LSSTVPLLAWLAVVVLGSAYAGREL 58

Query: 62  LHVLLASATQ--RKLE----DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
             +  A+     R  E     +  + +  T    + + L    L + + F      +Q  
Sbjct: 59  GALADAALASIGRPFEVAAPALGELAWRTTLWLSALALLPAAALGVLVEF------LQAG 112

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITISLTENYFT 172
           PV +   +KP  + ++  EGIKR++ ++NLV   KS  K +L   +G ++   +  +   
Sbjct: 113 PVFSAERLKPKAEHLNPVEGIKRMFGLDNLVELAKSLAKCVLLLAIGALVLRGVLADSAR 172

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +L    A   ++        R+ L   L+    +  LD+ W  H +  KL+MS ++IK E
Sbjct: 173 LLQ-APAGVGAVGTLLLEVTRQALTWTLVAFVLVAALDMAWQRHSFTKKLRMSLRDIKQE 231

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K+S G+P ++ +++   +   +    +A  +A +++ NPTH A+A+ Y +     P + 
Sbjct: 232 TKESEGDPQVRQQRRQAHQEWSQRNAQQAARQANVLVVNPTHVAIAIDYDRDTCPVPTIS 291

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AKG++ +A+ MR+ A E  +PI     LAR L  +  +   +P   +  VA++I
Sbjct: 292 AKGEDHVARAMREAAEEAGVPIVRNVPLARDLLGRGEVGQLVPADLFDVVAEVI 345


>gi|330447934|ref|ZP_08311582.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492125|dbj|GAA06079.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 375

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 187/357 (52%), Gaps = 24/357 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-IYSVT 59
           MS++ A D KTE  + +KI  A  +G  P +++ +  +  +A +++  F+F    I+ V 
Sbjct: 1   MSQSSAQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVF--FYFQIDVIWQVL 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRIP 116
           + +  L  + +    +D+      +  L  S +   +L++P   L  +  I S L+    
Sbjct: 58  NSVFQLNMTISH---DDLRSPWLAIEALGTSLAIIIQLLLPLFALIFITAIASSLLLGGW 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +     V P   ++    GIKR++S  +LV  +KS +K+ ++  ++ + L  N   +L  
Sbjct: 115 LFYPAGVLPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDVNLSRLLGM 174

Query: 177 IS-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
            +       +   +IL+H       +L+ + LFI  L  +DI +   +   +LKM+KQE+
Sbjct: 175 QNLPLKQGVSLIMTILFHGI-----LLMGVALFIFGL--IDIPYQKWEHAKELKMTKQEL 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E K + GNP IK R + I +   R K+ +A  +A ++I NPTHYA+A++Y  T ++AP
Sbjct: 228 KEEFKTNEGNPEIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +VAKG +  A  ++ IA +H++ I   P L R+++    I  AIP   Y AVA ++
Sbjct: 288 FVVAKGIDEAAMHIQTIAKQHDVEILRSPPLTRAIYHSTQIEQAIPSQLYVAVAHIL 344


>gi|308063444|gb|ADO05331.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Sat464]
          Length = 358

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E        +   SI    I+ +  FS      
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHA 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + +KL            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  VKDFSLDFSKESVQKL---------FNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKVIEPKFSKINPINGTKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFILAFIDLAIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGNPEIKAKIRQMMIKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA
Sbjct: 281 VPVVVAKGMDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVA 336


>gi|315186370|gb|EFU20130.1| flagellar biosynthetic protein FlhB [Spirochaeta thermophila DSM
           6578]
          Length = 387

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 170/348 (48%), Gaps = 10/348 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+  KI  A  EG    + E      +L  LI L    S    ++ S      +
Sbjct: 34  EGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTFFS 93

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           S +     + +H             +L +P  ++ +  G+   ++Q   +  +  + P  
Sbjct: 94  SISS---PEPTHTGRFFVLFLQFFLKLTLPFFVVALFAGVAGNVLQVGFLFTVKPITPDL 150

Query: 128 KRV--SLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP--H 182
           +R+  +     KR+ +S   L N  K+ +K+  +G +  +++      +++ +   P   
Sbjct: 151 QRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRV-PLLQ 209

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I +      R +    ++F+A ++++D  +   Q    LKMS++E+K+E K   G+P++
Sbjct: 210 GIRFLGALVFRILFEATVVFLA-ISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R +   R  +   M+     A ++ITNPTHYA+AL Y +   +AP +VAKG + +A +
Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           MR IA EH +P+ E   LAR+L++ V +   IP  +Y  VA ++ K+Y
Sbjct: 329 MRAIAREHGVPLVENRPLARALYQDVEVGDTIPEQYYAVVATILAKVY 376


>gi|83814498|ref|YP_446683.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855]
 gi|294508619|ref|YP_003572678.1| flagellar biosynthetic protein flhB [Salinibacter ruber M8]
 gi|83755892|gb|ABC44005.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855]
 gi|294344948|emb|CBH25726.1| Flagellar biosynthetic protein flhB [Salinibacter ruber M8]
          Length = 353

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 183/360 (50%), Gaps = 17/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      K   P+ +++E A  +GN  + R     S  +  L+  +  FS G  S   
Sbjct: 1   MSETQ---EKQYDPTPRRLEKAREKGN--VLRATEPVS--VGLLLTAMAVFSVGGASAFQ 53

Query: 61  DLHVLLAS---ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  + A     + R     + +  L+  +    + ++ P  ++ ++  +G  ++Q    
Sbjct: 54  SLQDMAARIFLRSARMSLTPASLQRLVAEIGAQVAGMLAPLFIVLIVAAVGLNMVQSGWN 113

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           ++   ++P   RV+  EG+K+I+S      F K+ +KI +VG I   ++      M+   
Sbjct: 114 VSFTPIQPQLSRVNPLEGLKQIFSSKGAFGFAKTLLKIGVVGPIAYFAMRPLIPEMVQVY 173

Query: 178 SANPHSILYHA---FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
           +    ++L  A   FF +   ++M L+ IA L   D  +   ++Y  LKMSK+E++DE K
Sbjct: 174 TLPLPALLNQAADWFFALMWRVLMGLVVIAAL---DYAFERWKYYEDLKMSKKEMEDEQK 230

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMME-ATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           ++ G+P  + +++  A+       M+ A  ++  ++TNPTHYA+ALRY   E  AP ++ 
Sbjct: 231 ETEGDPEFEEKRREKAKELAEQPRMDHAVMKSDAVVTNPTHYAIALRYDPDEAPAPRVLL 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG    A +++++A E ++P FE  SLA +L++ VP    IP   Y AVA ++ ++Y ++
Sbjct: 291 KGVRKRALRIKELAAEFDVPTFENRSLAHALYENVPEEEEIPEELYPAVAAILAEVYEQR 350


>gi|116626501|ref|YP_828657.1| type III secretion exporter [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229663|gb|ABJ88372.1| type III secretion exporter [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 354

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 95/143 (66%)

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
            +D+     +  S+L+MSKQEI++E+K   GNP +K R + + R R+R +MM+    AT 
Sbjct: 203 CVDLARQLQRHKSELRMSKQEIREEMKDVEGNPQMKARIRRLQRDRVRKQMMKDVPTATA 262

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           ++ NPTHYA+A+RY      AP++VAKG N +A ++R+ A EH +PI E P LA++L+K 
Sbjct: 263 VVVNPTHYAVAIRYQMDGMAAPMVVAKGMNHLALRIRQKATEHQVPIIENPPLAQALYKS 322

Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350
           V +   IPP  Y+AVA+++  I+
Sbjct: 323 VEVGQEIPPHLYRAVAEILAYIF 345


>gi|218193976|gb|EEC76403.1| hypothetical protein OsI_14046 [Oryza sativa Indica Group]
          Length = 324

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 118/197 (59%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   ++P F +++   GI +++S       +K+ +K +L+G+     L  ++  M+  
Sbjct: 56  VFSGKSLQPKFSKLNPLPGIAKMFSAQTGAELLKAILKSVLMGSSAGFFLWYHWPEMMRL 115

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           IS +P + + +A   V    ++++L I  +   D+ +  +  + KL+MS+Q+I+DE KQ 
Sbjct: 116 ISESPLTAMSNALNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQM 175

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R + + R+  R +MME   +A +I+TNPTHY++ALRY + +  AP +VAKG 
Sbjct: 176 EGDPHVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGA 235

Query: 297 NLIAKKMRKIAYEHNIP 313
            LIA ++R+I  E+ +P
Sbjct: 236 GLIALRIREIGTENRVP 252


>gi|256831232|ref|YP_003159960.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM
           4028]
 gi|256580408|gb|ACU91544.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM
           4028]
          Length = 355

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 184/362 (50%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D   ++TE  + K+   A  +GN P S+E     ++L  L+ L  +       + +
Sbjct: 1   MAQHDP--SRTENATPKRRNKARGQGNVPKSQELPKPLTLLFGLLMLQLYLGTIRTEIEN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +H         +L   S +  L      S S +V+P   + ++  + ++++ R+ V  L
Sbjct: 59  LMHWFFTEGFVFELTPAS-VYTLFRDCLYSISLMVLP---IMIVIAVAAFIVVRLQVGKL 114

Query: 121 ---NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
                 KP FK  ++  G+K++  S    V   KS      V     I L + +  ++  
Sbjct: 115 WAPKVFKPQFKMFNVLSGLKKLLISKQTFVRLAKSIFMAAAVAIGPYIVLKQAFGEVIPL 174

Query: 177 ISANPHSILYHAFFTVRKVLI-----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
                 SI  +   + + +       MIL+ IA L  L   W Y +    LKM+K E+KD
Sbjct: 175 FYQPAESIAAYVLKSGQTMFYYALTPMILIGIADL--LYTRWDYEE---NLKMTKSEVKD 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E KQ+ G+P IK++Q+    + +  +MM+   +A ++ITNPTH A+A+RY   E  AP++
Sbjct: 230 ERKQAEGDPAIKSKQRQKMMAVMMRRMMQDVPKADVVITNPTHLAIAIRYNAMEAPAPMV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG   +A++++ IA E+N+PI E   LAR+L+K + +   IP  FY+AVA ++ +IY 
Sbjct: 290 LAKGAGAVAQRIKDIARENNVPIRENKPLARALYKVIEVGDTIPEEFYQAVAAILAQIYK 349

Query: 352 KK 353
            K
Sbjct: 350 TK 351


>gi|229058418|ref|ZP_04196802.1| Flagellar biosynthetic protein [Bacillus cereus AH603]
 gi|228719927|gb|EEL71517.1| Flagellar biosynthetic protein [Bacillus cereus AH603]
          Length = 348

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 178/341 (52%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|99082795|ref|YP_614949.1| flagellar biosynthesis protein FlhB [Ruegeria sp. TM1040]
 gi|99039075|gb|ABF65687.1| Flagellar biosynthetic protein flhB [Ruegeria sp. TM1040]
          Length = 363

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 169/355 (47%), Gaps = 19/355 (5%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            END  D   E P+ +K+  A  EG+ P S +    +S L  LI    F++ G  S+   
Sbjct: 3   DENDDSDKSFE-PTPEKLRKARQEGDVPKSNDLLQAASYLGLLIA---FYTAGRSSIEQL 58

Query: 62  LHVLLASATQRKL-------EDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
             VL++   Q          + I+  V   F+   L+   +   +P  L+ +     +  
Sbjct: 59  GTVLMSMIDQPDRLAPVFFGDGIAAPVAWEFISDALTSVIAWFAVPAALVIL-----AVF 113

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
            Q+  V     ++P   R+S+ +  K  +  + L  F KSF K++L    + + L+    
Sbjct: 114 AQKAMVFAPKRIQPKLSRLSIIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGVYLSWRLP 173

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M+  +  +P +++        + LI+ L+    + ++D  +   ++  K  MS++++ D
Sbjct: 174 EMIASVGTSPFTVVPFLVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMD 233

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E+K S G+P  K ++K   R  +  ++  A   A ++I NPTHYA+AL++ +    AP  
Sbjct: 234 EMKNSEGDPHTKGQRKQKGRQIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPEC 293

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           VAKG + +A  +R+IA E+ +P+  +P  AR+L+  V +   I    Y  VA  I
Sbjct: 294 VAKGVDGVAAMIREIAQENGVPLHSDPPTARALYATVEVGEEIAEEHYAPVAAAI 348


>gi|322432982|ref|YP_004210231.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9]
 gi|321165209|gb|ADW70913.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9]
          Length = 367

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 174/348 (50%), Gaps = 4/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  NKTE  + K+ + A  +G    S+E     +I   +  L       +   T+    +
Sbjct: 2   ADSNKTEEATPKRRQKAREQGQVARSKELPSVLAIAGAIGALCMMSQSAVTHWTTFYRSM 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +A+   LE    I+F     S+   R +IP L+   +  + + L Q    +    ++ 
Sbjct: 62  LDTASTSDLESNGPILF---WGSVEVFRWIIPVLMSATVLSVAAGLAQGGLSIAPEAMQL 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R +    + +I+S+  + N +KS +    +  I    +  N+  ++   S     ++
Sbjct: 119 KFERFNPASKVGQIFSLAGVSNMLKSLLPFGAIAWIGEACIRSNWGMLIRASSFGLRQLV 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + +V     L +     +D   ++ +    LKMSK+EIK+E KQ+ GNP+IK+R
Sbjct: 179 TTLGGMIFEVAWKSALVLVAWAGVDYLLTWKKMEGDLKMSKEEIKEEYKQNDGNPLIKSR 238

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + + R   + + + A + AT+I+TNPTHYA+ALRY   E  AP +V+KG NL+A++++ 
Sbjct: 239 IRRLQRRMRKKQALAAAATATVIVTNPTHYAVALRYT-PEMAAPEVVSKGMNLLAQQIKA 297

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +  E+ I I E   LA++L+K V +   IP   Y+AVA ++  ++  +
Sbjct: 298 LGAENGIMILENKPLAQALYKTVEVGEVIPSTLYQAVADILVIVFRAQ 345


>gi|312884814|ref|ZP_07744506.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367466|gb|EFP95026.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 375

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 179/353 (50%), Gaps = 16/353 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+ + D KTE  S++KI+ A +EG  P +++ +     LA LIY    FS  +  +  
Sbjct: 1   MSESTSQD-KTEQASAQKIKKARSEGQIPRAKDFTAACIFLAVLIY----FSSQMSLIWE 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLLLFMMFGIGSYLIQRIPV 117
            +        +   +D++     + H   S      L IP  ++ +   + S LI    +
Sbjct: 56  KIAGTFEYNMRLTKQDLADPYQTIEHFGNSLGILIELFIPMFIVILSIAMASSLILGGWL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
               ++ P   ++   +GIKRI S+ ++V  +KS +K+ ++ TI+ + L  +   +L   
Sbjct: 116 FRPANLMPKMSKLDPIKGIKRIVSLRSVVELVKSALKVTVIFTILYLYLNNHLQPLLGMQ 175

Query: 178 SANPHSILYHAFFTVRKVLI--MILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEI 233
                  +      +  +L   +IL+ IA L    I   Y +W    +LKM+KQE+K+E 
Sbjct: 176 RLG----IEQGSIQIMNILFDGLILMGIALLVFGLIDIPYQRWEHLKELKMTKQELKEEY 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G P +K R + I +   R K+ +    A ++ITNPTHYA+A++Y  + +DAP +VA
Sbjct: 232 KNNEGRPEVKQRIRQIQQQFSRRKVDKMVPTADVVITNPTHYAVAIKYDPSISDAPFVVA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           KG +  A  ++++A ++ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 292 KGIDETAMHIQRVARDNQVEIIHSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344


>gi|262166221|ref|ZP_06033958.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223]
 gi|262025937|gb|EEY44605.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223]
          Length = 240

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 126/219 (57%), Gaps = 8/219 (3%)

Query: 139 IYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
           ++ + + V  +KS +K++LV  +    I  S  + +   LD    N    ++HA   +  
Sbjct: 1   MFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQN----IFHALDILLN 56

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
            +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K + G P +K R + + R   
Sbjct: 57  FVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAA 116

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A K+R+IA E++I I
Sbjct: 117 QRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAI 176

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
              P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 177 VPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 215


>gi|116049640|ref|YP_791555.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389926|ref|ZP_06879401.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           PAb1]
 gi|313110376|ref|ZP_07796265.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
 gi|115584861|gb|ABJ10876.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882767|gb|EFQ41361.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
          Length = 349

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 181/344 (52%), Gaps = 15/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  L+ LL  FS   Y +     +LL  
Sbjct: 4   EKTEQPTAKKLRDARRQGQVVKSKEI-VSSALILSLVALLMGFSD--YYLEHLGKLLLLP 60

Query: 69  AT------QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           A       ++ LE I   +       L+   LV   +++    G   +L      L+L+ 
Sbjct: 61  AEYIDLPFRQALETILENLLQELLYLLAPVLLVAALVVVLSHVGQYGFL------LSLDS 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           VKP  K+++  EG K+I+SI +LV F+KS +K+ L+  ++ ++L  N  ++L   +    
Sbjct: 115 VKPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLD 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            +   +   +R+++++  +    + V D  +  HQ Y +L+MSK E+K E K+  G+P I
Sbjct: 175 CVAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++   +      +     R+++I+ NPTH A+ +RY + E   P++  K  + +A +
Sbjct: 235 KSKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLITLKHTDALALR 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R+IA E  IP+ +   LAR+L +   ++  IP    +A A+++
Sbjct: 295 VRRIAEEEGIPVLQRVPLARALLRDGNVDQYIPADLIQATAEVL 338


>gi|77463637|ref|YP_353141.1| flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1]
 gi|77388055|gb|ABA79240.1| Flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1]
          Length = 380

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E D    KTE P+ K+ E A  +G+   S+E  +F+++   L  L+      P +   
Sbjct: 1   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117
            S   V+   A      D+  I   +  L  +   ++I GL++ +       L+Q  +  
Sbjct: 61  WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112

Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           +N +    SFK  R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +  
Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+
Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232

Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290
           S G+P +K R    Q   +R+  R +  ++   +AT I+TNPTH+A+ALRY+  E  APV
Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++A G+  +A  + +   +  I     P LAR+L+    I   IP   Y AVA ++  +Y
Sbjct: 293 ILAMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 352

Query: 351 H 351
            
Sbjct: 353 R 353


>gi|325921925|ref|ZP_08183736.1| HrcU protein [Xanthomonas gardneri ATCC 19865]
 gi|325547627|gb|EGD18670.1| HrcU protein [Xanthomonas gardneri ATCC 19865]
          Length = 357

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 165/358 (46%), Gaps = 47/358 (13%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFF 50
           D KTE P+ KK++DA  +G  PIS +                  S F   L  L+ + F 
Sbjct: 3   DEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGFD 62

Query: 51  FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
           F+    + T D     A+A QR L  I     LLT L   A+ L    +  F+  G+ + 
Sbjct: 63  FT----TNTRD-----ATALQRALGRIGIQAVLLT-LPFVAACLAAGLIGTFLQTGLNA- 111

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                   +L  V P F  ++   G K+I+S+ N ++ MK  +K  ++G ++   L    
Sbjct: 112 --------SLKPVTPKFDSLNPVNGFKKIFSLKNFIDLMKLGIKAAVIGVVLWYGLRALM 163

Query: 171 FTMLDFI-SANPH--SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMS 225
            T++  +    P+   I + A   +  + +++ + +         WS   W      +MS
Sbjct: 164 PTIIGLVYEPTPYIAQICWRALGILCALAVLVFVLVGAAD-----WSVQHWLFIRDKRMS 218

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           K E K E K+S G+P +K ++K  A+  +     E  ++A +++ NPTHYA+AL Y    
Sbjct: 219 KDEQKREHKESEGDPELKGKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDG 278

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
              P +VAKG +  A ++R  A    IPI   P LAR+L  +V +  A+P   ++ VA
Sbjct: 279 FGLPQVVAKGVDDGALELRAYAQNQGIPIVANPPLARAL-HEVDLGDAVPESLFETVA 335


>gi|300113616|ref|YP_003760191.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113]
 gi|299539553|gb|ADJ27870.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113]
          Length = 377

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 183/369 (49%), Gaps = 48/369 (13%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ A   +TE P++K+ EDA  +G  P SRE S    +L+  + L             
Sbjct: 1   MADSSA-QERTEQPTAKRQEDARKKGQVPRSRELSTTVLLLSSALGL------------- 46

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-GLLLFMMFGIGSYLIQRIPV-- 117
              VL+  +  + L D+     +   L L  +++  P  ++L   +G+G  +    P   
Sbjct: 47  ---VLVGESLLQGLADL-----MRQGLQLERAQIFEPKAVILQFQWGVGEAVKIITPFLA 98

Query: 118 -----------------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160
                            ++   +   +++++  +G+KRI+     +  +K+ +K +L+  
Sbjct: 99  LTLIAALAAPLLMGGWSVSAQSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSG 158

Query: 161 IITISLTENYFTMLDFISANPH-SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW- 218
           +  + L   + + L  +   P    ++     +   L+ +   +A + V+D    +  W 
Sbjct: 159 VACL-LFWLFSSDLMALGRQPFVPAVFQLAHLMGWSLVGLSASLALIAVIDA--PFQSWN 215

Query: 219 -YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
              +LKM++QE+K+E K++ GNP +K R + + R     +MM A  +A +++ NPTHYA+
Sbjct: 216 HIRQLKMTRQEVKEEHKETDGNPELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAV 275

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL Y Q +  AP +VAKG + +A K+R +A  +N+P+   P+L+R+++    ++  IP  
Sbjct: 276 ALNYEQDKQGAPRVVAKGVDQVALKIRTVAAGNNVPVLSAPALSRAIYHSTELDQEIPAG 335

Query: 338 FYKAVAQLI 346
            Y+AVAQ++
Sbjct: 336 LYRAVAQVL 344


>gi|221639480|ref|YP_002525742.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131]
 gi|221160261|gb|ACM01241.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131]
          Length = 382

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E D    KTE P+ K+ E A  +G+   S+E  +F+++   L  L+      P +   
Sbjct: 3   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 62

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117
            S   V+   A      D+  I   +  L  +   ++I GL++ +       L+Q  +  
Sbjct: 63  WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 114

Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           +N +    SFK  R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +  
Sbjct: 115 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 174

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+
Sbjct: 175 LWTAAPGDAATVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 234

Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290
           S G+P +K R    Q   +R+  R +  ++   +AT I+TNPTH+A+ALRY+  E  APV
Sbjct: 235 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 294

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++A G+  +A  + +   +  I     P LAR+L+    I   IP   Y AVA ++  +Y
Sbjct: 295 ILAMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 354

Query: 351 H 351
            
Sbjct: 355 R 355


>gi|317010987|gb|ADU84734.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           SouthAfrica7]
          Length = 358

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 177/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E        +   SI    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + ++L            L+     L++P L++ ++    S ++Q   + 
Sbjct: 62  LKDFSLDFSKESVQEL---------FNQLAKDTFLLILPILIILVVVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKAIEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+   LKM+KQ
Sbjct: 162 LFLGELNHAALLNLKGQLLWFKNKALLLISSLLFLFFVLAFIDLVIKRRQYTHSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  G+P IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGSPEIKAKIRQMMMKNAANKMMQEIPKANVVVTNPTHYAVALQF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            P++VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA
Sbjct: 281 VPIVVAKGTDHLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336


>gi|146293659|ref|YP_001184083.1| flagellar biosynthesis protein FlhB [Shewanella putrefaciens CN-32]
 gi|145565349|gb|ABP76284.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
          Length = 376

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 172/344 (50%), Gaps = 13/344 (3%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    +++L       +   PGI +  S +   + +  + +
Sbjct: 13  PTGRRLEQAREKGQVARSKELGT-AAVLLSAATGFYMLGPGIATALSHVFERVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSFKR 129
           + D +    +     + A  +  P L + ++  + ++ I  + +  +N     + P   +
Sbjct: 72  IYDTNQ---MFNVWGVVAGEIAWPMLKIMLLIVVVAF-IGNVSLGGMNFSTQAMMPKASK 127

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSILYH 187
           +S   G KR++ +  LV   K   K  +V       L   YF  +  +S++  P ++ +H
Sbjct: 128 MSPLAGFKRMFGVQALVELTKGIAKFSVV-AFSAYFLLSYYFNDILLLSSDHLPGNV-HH 185

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   +  + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R +
Sbjct: 186 ALDLLIWMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R   + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A
Sbjct: 246 QMQRELAQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVA 305

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            E+NI I   P LAR+++    ++  IP   + AVAQ++  ++ 
Sbjct: 306 REYNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQ 349


>gi|259417182|ref|ZP_05741101.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B]
 gi|259346088|gb|EEW57902.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B]
          Length = 363

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 169/347 (48%), Gaps = 18/347 (5%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           K+  P+ +K+  A  EG+ P S +    +S L  LI    F++ G  SV +   VL++  
Sbjct: 10  KSFEPTPEKLRKARLEGDVPKSNDLLQAASYLGLLIA---FYTAGGSSVEALGTVLMSMI 66

Query: 70  TQRKL-------EDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            Q          + I+  V   F+   L+   +  ++P  L+ +     +   Q+  V  
Sbjct: 67  DQPDRLAPVFFGDGIAAPVAGEFISAALTSVMAWFIVPAALVLL-----AVFAQKAMVFA 121

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P   R+S+ +  K  +  + L  F KSF K++L    + I L+     M+  +  
Sbjct: 122 PKRIEPKLSRLSVIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGIYLSWRLPEMIASVGT 181

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P+S++        + LI+ L+    + ++D  +   ++  K  MS++++ DE+K S G+
Sbjct: 182 SPYSVVPFLVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEGD 241

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P  K ++K   R  +  ++  A   A ++I NPTHYA+AL++ +    AP  VAKG + +
Sbjct: 242 PHTKGQRKQKGREIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDGV 301

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A  +R+IA E+ +P+  +P  AR+L+  V +   I    Y  VA  I
Sbjct: 302 AAMIREIAQENGVPLHSDPPTARALYATVEVGDEIAEEHYAPVAAAI 348


>gi|120597286|ref|YP_961860.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
 gi|146294569|ref|YP_001184993.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
 gi|120557379|gb|ABM23306.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
 gi|145566259|gb|ABP77194.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
          Length = 376

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 177/352 (50%), Gaps = 14/352 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57
           MS+    D KTE  + +K+  A  EG  P S++ +  + +L C + L     +F+  +  
Sbjct: 1   MSQTQQQD-KTEEATPQKLRKARKEGQVPRSKDLASAALVLGCSVMLTSNANWFATKVSG 59

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP- 116
           +T   ++LL  A      ++     ++ HL  S   ++     LF+M  + + +   +P 
Sbjct: 60  LTK-YNMLLTRA------ELDQPDMMVRHLGTSLVEMLTILSPLFIMVALLAAIAGALPG 112

Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             + N+ +    + R+    G+ RI+S  +LV  +KS +KI+L+ +I+ + L  +  ++L
Sbjct: 113 GPIFNVGNANFKYSRIDPIAGVGRIFSTQSLVELLKSCLKIVLLISIMLVFLNGHLQSLL 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            +        +      + + ++ + + +  +  +D+ + Y     +L+MS+QE+KDE  
Sbjct: 173 SYSHRPIDEAVRDGINLLSQGMLYLGVGLLVIAFIDVPYQYWHHKKQLRMSRQEVKDEHT 232

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           Q  G P IK + + + +   R +      +A +++ NPTHYA+AL+Y     DAP ++ K
Sbjct: 233 QQEGKPEIKAKIRQLQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVLTK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G   +A  MR++A +H + I + P L R+++    ++  IP   + A+A ++
Sbjct: 293 GTEELALYMRELAKKHGVEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVL 344


>gi|294675615|ref|YP_003576230.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB
           1003]
 gi|294474435|gb|ADE83823.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB
           1003]
          Length = 362

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 170/354 (48%), Gaps = 17/354 (4%)

Query: 1   MSENDAPDNKTE-APSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MSE D  D+  E  P+ +KIE A  +G+   S E +  +   A +I  L F    + S  
Sbjct: 1   MSEED--DSSKEFDPTPQKIEQARKQGDLVKSTEVTGAAVYAAIVITALAFGKSSLESFG 58

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           +   VL+  A    ++ +     +  ++    +  V P LLL  +  + +   QR  V  
Sbjct: 59  TWASVLIDQADSISVQLLGGGTVVAGNILGRMALTVAPWLLLPGVLVLAALAAQRAIVFA 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P   R+      K+ +    L  F KSFVK++++  I+      N+  ML  + A
Sbjct: 119 PEKLMPKVNRIDPIANFKQKFGSTGLFEFAKSFVKLVVISIILG-----NF--MLRELPA 171

Query: 180 NPHSILYHAFFTVRKVLIMILLFI-------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
              S  + A         MI+ F+         +  +D  W    +  + KM+++E+ DE
Sbjct: 172 ILLSQKFEATVVAVSFPQMIVEFLLLMLLLAGVIAAIDYLWQRFDFLRRNKMTRKELTDE 231

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +KQS G+P IK +++  A      +M+   ++A ++I NPTHYA+AL++ +    AP+ V
Sbjct: 232 MKQSEGDPHIKAQRRQKAIEIATKQMIADVAKADVVIVNPTHYAVALKWERGAKRAPLCV 291

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AKG + +A ++R++A E  +PI  +P  AR+L+  V I   I P  Y+ VA  I
Sbjct: 292 AKGVDEVAARIREVAAEAGVPIHSDPPTARALYAAVDIGQEIHPDHYRPVAAAI 345


>gi|15596887|ref|NP_250381.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
 gi|107101122|ref|ZP_01365040.1| hypothetical protein PaerPA_01002154 [Pseudomonas aeruginosa PACS2]
 gi|218892354|ref|YP_002441221.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
 gi|254234789|ref|ZP_04928112.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|254240035|ref|ZP_04933357.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|9947663|gb|AAG05079.1|AE004596_5 translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
 gi|126166720|gb|EAZ52231.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|126193413|gb|EAZ57476.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|218772580|emb|CAW28363.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
          Length = 349

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 181/344 (52%), Gaps = 15/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S+E  + S+++  L+ LL  FS   Y +     +LL  
Sbjct: 4   EKTEQPTAKKLRDARRQGQVVKSKEI-VSSALILSLVALLMGFSD--YYLEHLGKLLLLP 60

Query: 69  AT------QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           A       ++ LE I   +       L+   LV   +++    G   +L      L+L+ 
Sbjct: 61  AEYIDLPFRQALETILENLLQELLYLLAPVLLVAALVVVLSHVGQYGFL------LSLDS 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           VKP  K+++  EG K+I+SI +LV F+KS +K+ L+  ++ ++L  N  ++L   +    
Sbjct: 115 VKPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLD 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            +   +   +R+++++  +    + V D  +  HQ Y +L+MSK E+K E K+  G+P I
Sbjct: 175 CVAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++   +      +     R+++I+ NPTH A+ +RY + E   P++  K  + +A +
Sbjct: 235 KSKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLVTLKHTDALALR 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R+IA E  IP+ +   LAR+L +   ++  IP    +A A+++
Sbjct: 295 VRRIAEEEGIPVLQRIPLARALLRDGNVDQYIPADLIQATAEVL 338


>gi|332558493|ref|ZP_08412815.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N]
 gi|332276205|gb|EGJ21520.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N]
          Length = 380

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E D    KTE P+ K+ E A  +G+   S+E  +F+++   L  L+      P +   
Sbjct: 1   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117
            S   V+   A      D+  I   +  L  +   ++I GL++ +       L+Q  +  
Sbjct: 61  WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112

Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           +N +    SFK  R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +  
Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+
Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232

Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290
           S G+P +K R    Q   +R+  R +  ++   +AT I+TNPTH+A+ALRY+  E  APV
Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++A G+  +A  + +   +  +     P LAR+L+    I   IP   Y AVA ++  +Y
Sbjct: 293 ILAMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 352

Query: 351 H 351
            
Sbjct: 353 R 353


>gi|317486796|ref|ZP_07945612.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia
           3_1_6]
 gi|316921959|gb|EFV43229.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia
           3_1_6]
          Length = 346

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 172/341 (50%), Gaps = 9/341 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV---L 65
           +KTE P+ K++ ++  +G+   S++     ++LA  +Y++      + S+ + + +   L
Sbjct: 3   DKTEQPTPKRLRESREKGDVCKSQDVPSALTVLALSVYIVVMGGHLLESLLAMMELPMKL 62

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L++         +   F   H+++S   +V P + L M   + + L Q   +       P
Sbjct: 63  LSTPYAEAAPRAAEATF---HIAVS---IVAPLVGLVMAVALVANLGQVGILFAFKGAMP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             + VS  +  ++++S+ NLV F+K+ +K+ ++G  + + + ++  T+         ++ 
Sbjct: 117 KLENVSPSKWFQKVFSMKNLVEFLKNIIKVTVLGVTVWVVMRDHLPTLFAIQRGTIWTMW 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 V+ +L+M       +  +D  +   Q+     MSK E+K E K+  G+P +K +
Sbjct: 177 EVLGMAVKDLLLMAAGVFCVIAAVDYLFQKWQYTKNHMMSKDEVKREYKEMEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K + +  +    +    +A +++TNPTHYA+AL Y +     PV++AKG+  +A++M +
Sbjct: 237 RKQLHQEMLSQNALGNVRKAKVLVTNPTHYAVALDYEKDRTPLPVILAKGEGFLAQRMIR 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A E  IPI     LARSLF+    N+ IP      VA+++
Sbjct: 297 VAQEEGIPIMRNVPLARSLFENGTENAYIPKDLIGPVAEVL 337


>gi|255264526|ref|ZP_05343868.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62]
 gi|255106861|gb|EET49535.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62]
          Length = 374

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 170/352 (48%), Gaps = 13/352 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    K    ++KK+EDA  +G  P S + +  +S    LI +  F S  I    +
Sbjct: 15  MAEDDT--EKPHEATAKKLEDARKKGEFPKSVDLTTSASYAGMLIVMAVFGSFSIERFGA 72

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS------LSASRLVIPGLLLFMMFGIGSYLIQR 114
            +  L++         ++H+ FL    +      L  +  + P   +  +  + + + QR
Sbjct: 73  LMVQLISEPVA-----LAHVAFLAPGGAQAKWVILGLATQLAPWFTVPALCALVALVTQR 127

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V     + P   R+SL    K  +  + L  F+KSF K+ +   I+++ L+     +L
Sbjct: 128 AIVFAPTKLAPKISRISLLSNAKNKFGRSGLFEFLKSFSKLTIYSIILSVFLSIKLPIIL 187

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             ++  P  I       + ++L ++L+    +  +D  W + +   K  MS QEIKDE K
Sbjct: 188 SSMTTQPRLISAQLATLIVELLSLVLVVSIIIGGVDYLWQHAEHLRKNMMSDQEIKDEHK 247

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            + G+P +K  ++        ++M+ A   A ++I NPTH+A+AL++ ++    P  +AK
Sbjct: 248 NNEGDPGMKQERRQRGYDIAMNQMLGAVEEADVVIVNPTHFAVALKWDRSRGSVPKCLAK 307

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G + IA ++R+ A E  IPI  +P  AR+L+  V I   I P  YKAVA  I
Sbjct: 308 GVDEIAARIRERAAEEAIPIHSDPPTARALYATVEIGQEIRPDHYKAVAAAI 359


>gi|118592629|ref|ZP_01550019.1| translocation protein in type III secretion [Stappia aggregata IAM
           12614]
 gi|118434680|gb|EAV41331.1| translocation protein in type III secretion [Stappia aggregata IAM
           12614]
          Length = 371

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 171/348 (49%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG------IYSVTSDL 62
            KTE P+ KK+ DA  +G    S++     S+L  + YL   +         +  + + L
Sbjct: 8   EKTEQPTHKKLRDARKKGQVARSQDLVTTISLLGVIAYLWLAWDYNFAKFVEMLDIVAAL 67

Query: 63  HV--LLASATQ--RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           H     ASA    + + DIS +V             V+P L +    GI     Q   + 
Sbjct: 68  HGAGFRASAFNALQAMFDISIVV-------------VLPLLGVGFALGIAGNYFQFGSIF 114

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              ++KP  + +S  +G+K+I+S+  LV F+KS +KII +  ++   + +     ++ + 
Sbjct: 115 AFENLKPKIENISPAKGLKKIFSVKQLVEFLKSLIKIIFLSVLLFFVIRDAIGPYMNAVQ 174

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                +       +   L+   L  A ++  D  +   Q   +L M+K E++ E K++ G
Sbjct: 175 CGLQCLTAVTSSMLLTTLLFTALAFAIVSGFDFIFQKFQHKKELMMTKTEVQREYKETEG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK R+K +A+  +    ++ T  AT +I NPTH+A+ + Y       P++VAKG+NL
Sbjct: 235 DPLIKGRRKQLAQEMVLSDGIDRTRNATAVIVNPTHFAVVIDYKPDIAPLPLIVAKGRNL 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +R  A +H +P+F    LARSL+ +  + + +P  +++ +A+++
Sbjct: 295 HAHDLRTEAEKHGVPVFRNVLLARSLYAESDVGAFVPDEWFEVIAKIL 342


>gi|296121646|ref|YP_003629424.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM
           3776]
 gi|296013986|gb|ADG67225.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM
           3776]
          Length = 360

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 187/361 (51%), Gaps = 15/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++ D KTE P+ ++  +A  +GN   S++ +  + +L     +L++    +    +
Sbjct: 1   MAEDESGD-KTEDPTERRRSEAREQGNVVKSQDLTAAALMLGS-AGVLWWHGRNVAEYMA 58

Query: 61  DLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L     SA      D + +V L   HL  S  + V P L+L  +  I   L+Q   + +
Sbjct: 59  RLMRNSLSAAPWTTFDQNDLVSLAWAHLGESGWQ-VAPLLILLALAAIAINLLQVGFLFS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P ++R++   GI+R++SI ++     +  K+ L+G++ T  +    +  L   +A
Sbjct: 118 PEVLQPKWERINPLSGIQRLFSITSVARLGANLAKLALLGSVATWFV----YDGLHRFAA 173

Query: 180 NPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             H  L          LI ++ ++A       + D  + + ++   LKMSKQEI+DE K+
Sbjct: 174 LAHQPLTVVAVVAGSELISLIFWMALAIFVAALADFAFQWWKYEQDLKMSKQEIRDEYKE 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P+I+ R++   R   + + +++   A ++ITNPT  A+A++Y      AP++VAKG
Sbjct: 234 MDGDPLIRMRRREAHRKLTQGRELQSVKTADVVITNPTEIAIAIKYDVATMPAPIVVAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHK 352
              +A ++R++A E+ +PI E   +AR+L+K   +   IP   Y   A++   +YKI  +
Sbjct: 294 AGELAAQIRRLAAENGVPIIERKPVARALYKLTRVGDPIPSDLYAVFAEILAYVYKITGR 353

Query: 353 K 353
           K
Sbjct: 354 K 354


>gi|126175115|ref|YP_001051264.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS155]
 gi|125998320|gb|ABN62395.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
          Length = 376

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 174/346 (50%), Gaps = 17/346 (4%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           P+ ++IE A  +G    S+E    + ++  AC  Y+L    P + +  + +   + +  +
Sbjct: 13  PTGRRIEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127
            ++ D      +     + AS +  P   + ++  + ++ I  + +  +N     + P  
Sbjct: 70  AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185
            ++S   G KR++ +  LV   K   K  +V     + L+  YF  +  +S++  P ++ 
Sbjct: 126 SKMSPAAGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           YHA   +  + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K R
Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGR 243

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + +     + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+
Sbjct: 244 VRQMQHELAQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA EHNI I   P LAR+++    ++  IP   + AVAQ++  ++ 
Sbjct: 304 IAREHNIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349


>gi|283850714|ref|ZP_06368001.1| type III secretion exporter [Desulfovibrio sp. FW1012B]
 gi|283573957|gb|EFC21930.1| type III secretion exporter [Desulfovibrio sp. FW1012B]
          Length = 357

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 4/166 (2%)

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +L + F  V   L+ +++ IA L V    W Y +    LKM+K EIKDE KQ+ G+P IK
Sbjct: 186 LLGNGFILVLYTLVPMVI-IAVLDVWYTRWDYEE---NLKMTKDEIKDETKQAIGDPAIK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            +QK      ++ +M++   +A ++ITNPTH+A ALRY   E+ AP+L+AKG + +A+K+
Sbjct: 242 QQQKRKMMEVMQRRMLQDVPKADVVITNPTHFACALRYNPKESPAPLLLAKGADHLAEKI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           ++IA EH IPI E   LA++L+K V I   IP   Y+AVA ++ ++
Sbjct: 302 KEIAREHRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQL 347


>gi|229011062|ref|ZP_04168256.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048]
 gi|228750234|gb|EEM00066.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048]
          Length = 348

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 177/344 (51%), Gaps = 11/344 (3%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+  +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDQQV 233

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  
Sbjct: 234 KGKRKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALY 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++
Sbjct: 294 IRTLAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVM 337


>gi|167567948|ref|ZP_02360864.1| type III secretion system protein [Burkholderia oklahomensis EO147]
 gi|167573178|ref|ZP_02366052.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 352

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 173/342 (50%), Gaps = 9/342 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS--DLHVL 65
           D KTE P+ KK+ DA  +G    S + S  +S+ A +++L+    P   ++ S  D  + 
Sbjct: 3   DEKTEEPTEKKLRDARKDGQVSRSADFSDAASMTAAVLFLVAAADPLDDAMRSLVDCALT 62

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     L +++  ++ L  ++L A   ++P L    + GIG  ++Q    +++  V P
Sbjct: 63  FVSGDH-SLAEMTTRLYKLGGIALWA---IVPYLCAAALAGIGGSILQVGLQVSMKPVMP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +   +S  +G+KRI+S   ++  +K  VK   V  ++  ++ E  F ++      P   L
Sbjct: 119 NIGALSPADGLKRIFSPRTVIESVKMLVKAAAVFCVMWKTV-EWLFPLIAGALYQPLPEL 177

Query: 186 YHAFFTVRKVLIMILL-FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
               + +   L+M+     A +   D+   +  +  +++MSK E+K E K   G+P++K 
Sbjct: 178 SQISWEILTKLLMVAAGLFALVGAADMKLQHFMFMKQMRMSKDEVKREAKNDEGDPLLKG 237

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            ++ IAR           +RA  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R
Sbjct: 238 ERRRIARELAAAPPQRQVARANFVVVNPTHYAVAVRYASDEHPLPRVIAKGTDETAAALR 297

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + A   N+PI   P +AR+LF +V +   IP   ++ +A ++
Sbjct: 298 RAAQNANVPIVGNPPVARALF-EVGVEEPIPEELFEIIAAIL 338


>gi|188992470|ref|YP_001904480.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734230|emb|CAP52438.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris]
          Length = 357

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 165/338 (48%), Gaps = 7/338 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK++DA  +G  PIS + +  + +LA L+ +    S  +  + + + +   
Sbjct: 3   DEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGFD 62

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            AT  +  D + +   L  + +    L +P +   +  G+    +Q     +L  V P F
Sbjct: 63  FATNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPKF 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             ++   G+K+++S+ +L+N +K  +K  ++G ++   L     T++      P  I   
Sbjct: 121 DSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQI 180

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +  +  +  + +L    +   D  WS   W      +MSK E K E K+S G+P +K +
Sbjct: 181 GWRALGILCALAVLVFVLVGAAD--WSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGK 238

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K  A+  +     E  ++A +++ NPTHYA+AL Y       P +VAKG +  A ++R 
Sbjct: 239 RKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRA 298

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            A+   IPI   P LAR+L  +V +  A+P   ++ VA
Sbjct: 299 YAHNQGIPIVANPPLARALH-EVELGEAVPESLFETVA 335


>gi|172064924|ref|YP_001815636.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
 gi|171997166|gb|ACB68083.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
          Length = 352

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 23/349 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK++    EG   +++ + L    +A L  ++   + G + +   L  ++ 
Sbjct: 3   DEKTEEPTDKKLDKVREEGQ--VAKSSDLVE--VASLGSIVLVLTAGQHYLADTLRAVVK 58

Query: 68  SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            A       R+L+D+S     L H+ L A  L+     + ++    +   Q    ++L  
Sbjct: 59  EAIDFTHGPRELQDLS---VALVHMGLQALGLLCGIAAVALVAAFLALAPQTGLKISLKA 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TI-SLTENYFTMLDFISA 179
           V P    VS   G +RI+S+N+ ++ +K  VK  ++  ++  TI S      + LD    
Sbjct: 116 VMPKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVP 175

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSY 237
              ++L+     V  V++ + +FIA +   D  +   +W    K +MSK E+K E K+S 
Sbjct: 176 QLIAVLWSVLMHV--VVVALGVFIA-IGAFD--YKLQKWLFIRKNRMSKDEVKREHKESD 230

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K  +K +AR   +       SRA +++ NP HYA+ALRY  TE   PV++AKG +
Sbjct: 231 GNPEVKGERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLD 290

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             A ++R+ A    +PI   P +AR L K VP+N  IP   ++ VA ++
Sbjct: 291 EQALRLRQQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 338


>gi|94495442|ref|ZP_01302022.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
 gi|94424830|gb|EAT09851.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
          Length = 378

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 173/366 (47%), Gaps = 32/366 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+       KTE P+ KK++DA  +G+   SRE      ++A  I  L    P   S+  
Sbjct: 1   MAGGSEGGEKTEKPTPKKLQDAAKKGDILQSRELGTALVVMAG-IGCLAVIGP---SLID 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-RLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  +L  A + + EDI         L L AS  L + G++L   F         +  L 
Sbjct: 57  ALRDMLVEALRIRREDIVDFSPAKRGLDLLASIALPVAGVML-ATFLAAIAAPALLGSLG 115

Query: 120 L--NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI----ITISLTENYFTM 173
                  P  ++++   G+KRI+ +  L+  +KS  K+ L+G+I    I   LTE     
Sbjct: 116 FRPGAFAPKPEKLNPLSGLKRIFGMQGLIELLKSIAKVGLLGSIGVWLIWDRLTE----- 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEI 229
              I+    + +  A   V  + I   L +A     +  +D+     Q   +L MSKQE+
Sbjct: 171 ---ITGLGKAGIAPAIADVGNIFIFTCLVMAGGLFLIAGIDVPAQIMQRAKRLGMSKQEV 227

Query: 230 KDEIKQSYGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KDE K+S G+P +K     RQ  +     R    +A + A++IITNPTH+A+ALRY   +
Sbjct: 228 KDEHKESEGSPELKGHIRRRQFEVLSGSTR----KAVAEASVIITNPTHFAVALRYKPGQ 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + APV+VAKG + IA  +R +A  H + + + P LAR+++        +    Y AVA +
Sbjct: 284 DAAPVVVAKGCDAIAASIRDLADTHGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATV 343

Query: 346 IYKIYH 351
           +  ++ 
Sbjct: 344 LAFVFR 349


>gi|170698356|ref|ZP_02889430.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
 gi|170136695|gb|EDT04949.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
          Length = 352

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 173/349 (49%), Gaps = 23/349 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK++    EG   +++ + L    +A L  ++   + G + +   L  ++ 
Sbjct: 3   DEKTEEPTDKKLDKVREEGQ--VAKSSDLVE--VASLGSIVLVLTAGQHYLADTLRAVVK 58

Query: 68  SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            A       R+L+D+S     L H+ L A  L+     + ++    +   Q    ++L  
Sbjct: 59  EAIDFTHGPRELQDLS---VALVHMGLQALGLLCGIAAVALIAAFLALAPQTGLKISLKA 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGTIITI--SLTENYFTMLDFISA 179
           V P    VS   G +RI+S+N+ ++ +K  VK  ILV  +     S      + LD    
Sbjct: 116 VMPKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVP 175

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSY 237
              ++L+     V  V++ + +FIA +   D  +   +W    K +MSK E+K E K+S 
Sbjct: 176 QLIAVLWSVLMHV--VVVALGVFIA-IGAFD--YKLQKWLFIRKNRMSKDEVKREHKESD 230

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K  +K +AR   +       SRA +++ NP HYA+ALRY  TE   PV++AKG +
Sbjct: 231 GNPEVKGERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLD 290

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             A ++R+ A    +PI   P +AR L K VP+N  IP   ++ VA ++
Sbjct: 291 EQALRLRQQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 338


>gi|294084388|ref|YP_003551146.1| flagellar protein flhB [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663961|gb|ADE39062.1| Flagellar protein FlhB [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 385

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 178/367 (48%), Gaps = 34/367 (9%)

Query: 3   ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
           E+     KTE PS +K+E A  +G    S+EA +F+++   ++ ++     G+ SV+S  
Sbjct: 4   ESSDGQEKTEDPSERKLEKAREDGQVLSSKEAFVFTTLAMAVVLMM-----GLSSVSS-- 56

Query: 63  HVLLASATQRKLEDISHI----------VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
             L    T  + ++  HI           F +  +  +   + +  + LF    +G    
Sbjct: 57  AGLTHWGTLFRWDNADHIDTLAFGKLVQSFWMIIIISTIIGVPMMIVTLFTQLAVGG--- 113

Query: 113 QRIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                +N      +FK  R++   G+KR++S  +LV   KS +K++L+  +  + +    
Sbjct: 114 -----VNFAPKSMAFKANRINPISGLKRMFSAKSLVELGKSILKVVLLFGVAGLLIYGQL 168

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
            ++L       +  +         +L  +L+ +  +  +D  W  +    KLKMS+QE K
Sbjct: 169 PSILRLSEGTLNGAIEKMGDVFPALLGAMLIVLFIIAAIDYSWQSYSHTKKLKMSRQEQK 228

Query: 231 DEIKQSYGNPIIKNR------QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           DE KQ+ G+P +K +      ++S A S+ R  + E  + AT IITNPTH+A+AL+Y+  
Sbjct: 229 DEHKQTEGSPEVKAKIRRMQMEQSQASSQQRESL-ENVADATAIITNPTHFAVALKYVAG 287

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E  APV++A G+  IA+++ + A +  I I   P LAR+LF    I   I    Y AVA 
Sbjct: 288 EAGAPVVLAMGKGRIAEQIIERANDSKITIMRSPLLARALFFTSDIGGEISEKLYNAVAI 347

Query: 345 LIYKIYH 351
            +  IY 
Sbjct: 348 ALAYIYR 354


>gi|28901400|ref|NP_801055.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835995|ref|ZP_01988662.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|260362954|ref|ZP_05775823.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|260880241|ref|ZP_05892596.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|260895358|ref|ZP_05903854.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|260901183|ref|ZP_05909578.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|28809947|dbj|BAC62888.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750749|gb|EDM61494.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|308085557|gb|EFO35252.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|308091839|gb|EFO41534.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|308109328|gb|EFO46868.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|308112104|gb|EFO49644.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|328469334|gb|EGF40280.1| flagellar biosynthetic protein [Vibrio parahaemolyticus 10329]
          Length = 375

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 16/353 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+  + D KTE  S +K++ A  EG  P ++E   F++ +  +   L+F+S  I S+  
Sbjct: 1   MSDQSSQD-KTEKASPQKVKKARQEGQIPRAKE---FTTAVIFMAVALYFYS-QINSIWE 55

Query: 61  DLHVLL---ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            +  +     S T+  LE+   +V  +         +++P   + ++   GS ++    +
Sbjct: 56  SMFGIFRYNMSLTKADLENPQQMVEQVGQSLGMIIEMLLPLFTVIIIVTFGSSMVLGGWM 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
               ++ P   +++   GIKRI+S  +LV  +KS +K+ ++  I+   L +N+   L  I
Sbjct: 116 FRPANMLPKLSKLNPLSGIKRIFSTRSLVELVKSTIKVTVIFGILYGYL-DNHLQPLLGI 174

Query: 178 SANPHSILYHAFFTVRKVLI----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
              P   L   F  V  +L     ++   +    V+DI +   +   +L+M+KQE+K+E 
Sbjct: 175 QNLP---LNQGFSMVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEF 231

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G P +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +DAP +VA
Sbjct: 232 KNNEGRPEVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVA 291

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           KG +  A  +++IA E+ + I   P L RS++    I  AIP   Y AVA ++
Sbjct: 292 KGVDETAMHIQRIARENQVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHIL 344


>gi|220929449|ref|YP_002506358.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum
           H10]
 gi|219999777|gb|ACL76378.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum
           H10]
          Length = 381

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 190/358 (53%), Gaps = 19/358 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK  DA  +G    SRE +  S IL   I  +  F   IYS    L   
Sbjct: 27  GAGDKTEKATPKKKSDARKKGQVFQSREMTA-SLILIITIVAMRIFGGTIYS---QLTQY 82

Query: 66  LASATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLI---QRIPVL-NL 120
           +       L     I F +L +L + A  ++   +L  ++  + + LI    ++ +L  +
Sbjct: 83  IKKTFNEYLTVKDAIDFNILANLFIDALMVLAKTVLPLLLMALLAALIVNYAQVGILFTM 142

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII---TISLTENYFTMLDFI 177
             +K    R++   G KRI+S+ ++V  +KS +KII+V  +      S TE   +++D  
Sbjct: 143 ETLKIKGDRINPLSGFKRIFSLRSVVELLKSIIKIIIVSWVAYSYLKSKTEQVLSLMDTD 202

Query: 178 SANPHSILYHAFFTV--RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             N    +  A FTV  R  + M++L  A     D  +  + +   LKM+KQE+K+E KQ
Sbjct: 203 LMNVLIFICDASFTVALRICMAMVILGFA-----DYLYQRYDYEKNLKMTKQEVKEEYKQ 257

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P IK++ K   R     +MM+   +A ++ITNPTH+A+AL+Y   ++ AP +VAKG
Sbjct: 258 MEGSPEIKSKIKQKQRQMSMKRMMQDIPKADVVITNPTHFAVALKYDTEKSSAPFVVAKG 317

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           Q+ IA ++++IA ++ + I E   LAR+L+  V I  AIPP  Y+AVA+++  +Y+ K
Sbjct: 318 QDYIALRIKQIASDNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375


>gi|317121832|ref|YP_004101835.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885]
 gi|315591812|gb|ADU51108.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885]
          Length = 477

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 135/244 (55%)

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
           G+  +Q   +  +  V P ++R++   G++R+ S   LV  +K+ VK+ ++  ++  +L 
Sbjct: 172 GAGFVQTGGLFQIGLVAPRWERINPLAGLQRLVSRRALVELLKAPVKLAVLVAVLGPALV 231

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
           +    +L        ++L  A   V  ++    L    + + D  + + +    L+M+ Q
Sbjct: 232 QAAGQLLAATGTPAEALLPAAARAVHGLMWRGALAYLVVALADYAYQWWEHQQSLRMTVQ 291

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E K + K++ G+P+++ R +   R   R +M++   R  +++TNPTH A+ALRY      
Sbjct: 292 EWKQDQKEAEGDPVLRQRLRQRQRQLARRRMLQEVPRVDVVVTNPTHVAVALRYDPARMG 351

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           APV+VAKG  ++A ++R +A  H +P+ EEP+LAR+L+K V +   IPP  Y AVA+++ 
Sbjct: 352 APVVVAKGLGVLALRIRAVAEAHGVPVMEEPALARALYKAVEVGQEIPPALYVAVAEVLA 411

Query: 348 KIYH 351
            ++ 
Sbjct: 412 FVWR 415


>gi|56551546|ref|YP_162385.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543120|gb|AAV89274.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 380

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 191/372 (51%), Gaps = 43/372 (11%)

Query: 1   MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+++D   D KTEAP+ K++ +   +G+   S+E  +  ++LA L + L      +Y   
Sbjct: 1   MTDSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVY--- 57

Query: 60  SDLHVLLASATQ------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG------- 106
            DL ++L            K +  S  + L+T +       ++P  +LF++         
Sbjct: 58  -DLGIMLKMGLSFDFNAFSKFDPFSVFIRLITCI-------ILPFSMLFVLMAFAAIAAP 109

Query: 107 --IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
             +GS L  R   LN    KP  +R++   G  R++ +  L    KS VK++L+G++   
Sbjct: 110 AVLGS-LGFRWEALNF---KP--ERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLW 163

Query: 165 SLTENYFTMLDFISANPHSIL---YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
            L +    ++     +  + +    H F  +  VL+M +  +A +  +D+     +   +
Sbjct: 164 ILWQRLPVIMQLGRHDLKAAINEIGHIFLIL--VLVMSVA-LAVVAAIDVPIQIFRRNRR 220

Query: 222 LKMSKQEIKDEIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
           L+MSKQEIKDE KQ+ G+P IK   RQ+ IA  R  ++  +A   +T++ITNPTH+A+AL
Sbjct: 221 LRMSKQEIKDEHKQTEGSPEIKAAVRQRQIAVFRASNR--KAVQDSTVVITNPTHFAVAL 278

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
           +Y   E+ AP++ AKG + +A  +R++A E ++P+   P LAR+++        I    Y
Sbjct: 279 KYKAGEDIAPIVTAKGIDELALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELY 338

Query: 340 KAVAQLIYKIYH 351
           KAVA ++  I+ 
Sbjct: 339 KAVASILAFIFR 350


>gi|315126008|ref|YP_004068011.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913]
 gi|315014522|gb|ADT67860.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 183/360 (50%), Gaps = 36/360 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIY 56
           MSEN + + KTE P+ K+++ A  +G    S+E +    L  SI   L +   F+S  + 
Sbjct: 1   MSENSSQE-KTEQPTEKRLKKAKEDGQVARSKELNTAILLMVSIAGLLWFANLFYSLFVN 59

Query: 57  SVTSDL---HVLLASATQRKLEDISHIVFLLTHLS----LSASRLVIPGLLLFMMFGIGS 109
            + S +   H ++ +     +     I+ +L+ L+    LS   + I G L       G 
Sbjct: 60  LMNSTMVLDHTIINNKKMMPIALSDAIMNMLSTLTPFLLLSFCAMWITGCL------PGG 113

Query: 110 YLI-QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
           ++  +++  L ++ + P         G+ +++   +LV  +KS +KI L+   +   LT+
Sbjct: 114 FVFSKKLVALKMSKLNP-------LTGLGKMFGKQSLVELLKSILKITLLAICLYTFLTK 166

Query: 169 NYFTM-----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
            +  +     LD   A    I     F    + + +LLFIA   V+D+ +   Q   K+K
Sbjct: 167 LWMQLMMLQNLDIKVAIGQGI--ELLFLSLMITVTLLLFIA---VIDVPFQQKQIADKIK 221

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M+ QE+K+E K S G+P IKN+ + I   +   K+ E    A +I+TNPTHYA+A++Y +
Sbjct: 222 MTHQEVKEERKSSDGSPEIKNKIRQIQYQQSNRKIEERVPTADVIVTNPTHYAVAIKYSE 281

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
               AP +VAKG + +A ++R++A  +N  I E P+LAR+++    ++  +P   Y AVA
Sbjct: 282 EAAKAPYVVAKGVDEMALRIREVARMNNKEIIEIPALARAIYFSTRVDQEVPNGLYSAVA 341


>gi|241761183|ref|ZP_04759272.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752855|ref|YP_003225748.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241374802|gb|EER64263.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552218|gb|ACV75164.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 380

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 191/372 (51%), Gaps = 43/372 (11%)

Query: 1   MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+++D   D KTEAP+ K++ +   +G+   S+E  +  ++LA L + L      +Y   
Sbjct: 1   MADSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVY--- 57

Query: 60  SDLHVLLASATQ------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG------- 106
            DL ++L            K +  S  + L+T +       ++P  +LF++         
Sbjct: 58  -DLGIMLKMGLSFDFNAFSKFDPFSVFIRLITCI-------ILPFSMLFVLMAFAAIAAP 109

Query: 107 --IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
             +GS L  R   LN    KP  +R++   G  R++ +  L    KS VK++L+G++   
Sbjct: 110 AVLGS-LGFRWEALNF---KP--ERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLW 163

Query: 165 SLTENYFTMLDFISANPHSIL---YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
            L +    ++     +  + +    H F  +  VL+M +  +A +  +D+     +   +
Sbjct: 164 ILWQRLPVIMQLGRHDLKAAINEIGHIFLIL--VLVMSVA-LAVVAAIDVPIQIFRRNRR 220

Query: 222 LKMSKQEIKDEIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
           L+MSKQEIKDE KQ+ G+P IK   RQ+ IA  R  ++  +A   +T++ITNPTH+A+AL
Sbjct: 221 LRMSKQEIKDEHKQTEGSPEIKAAVRQRQIAVFRASNR--KAVQDSTVVITNPTHFAVAL 278

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
           +Y   E+ AP++ AKG + +A  +R++A E ++P+   P LAR+++        I    Y
Sbjct: 279 KYKAGEDIAPIVTAKGIDELALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELY 338

Query: 340 KAVAQLIYKIYH 351
           KAVA ++  I+ 
Sbjct: 339 KAVASILAFIFR 350


>gi|126730129|ref|ZP_01745941.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37]
 gi|126709509|gb|EBA08563.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37]
          Length = 363

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 172/352 (48%), Gaps = 11/352 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    K+  PS +K++ A  +G  P  R   L ++ ++ L  L+   + G Y ++ 
Sbjct: 1   MADQDEAAEKSHEPSQRKLDQARKKGEIP--RSTDLLTA-MSYLGMLVCGTAAGGYMLSQ 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV------IPGLLLFMMFGIGSYLIQR 114
              V+L    Q   + I+   F      L+ S +V      +P LL+  +F + +    R
Sbjct: 58  FAEVMLPLLEQP--DRIAKGFFGGNAAPLAGSVMVAAISPVLPLLLVPGVFVLLTLFATR 115

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
                   ++P   R++  EG K  +    L  F KSFVK+ +   ++ + L     +++
Sbjct: 116 GFTFAGTKLQPKVSRINPIEGAKNKFGRRGLFEFFKSFVKLTIYSALLAVFLQHQLDSIV 175

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +   P   +      + + L++++L    +  +D  W   +   K +MS++E++DE+K
Sbjct: 176 GTVFGTPAEAILLMTDLILRFLLVVVLIAVVIGGIDAFWQRMEHIRKNRMSQKELRDEMK 235

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            S G+P IK  ++  A+    ++M+     A ++I NPTHYA+AL++ +    APV VAK
Sbjct: 236 DSEGDPHIKQHRRMRAQEMALNQMLPDVPDADVVIVNPTHYAIALKWSRMPGSAPVCVAK 295

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G + +A ++R++A +  +PI  +P  AR+LF    I   I    Y+ VA  I
Sbjct: 296 GTDHVAARIREVATDAGVPIHSDPPTARALFATTRIGDEIATEHYRPVAAAI 347


>gi|58426834|gb|AAW75871.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 333

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 127/229 (55%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P   +++   G+KR++  N+L   +KS ++++ VG   +  ++++   +   +S    
Sbjct: 79  IMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQPLE 138

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P +
Sbjct: 139 QAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSPEV 198

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A +
Sbjct: 199 KGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMAFR 258

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y 
Sbjct: 259 IREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQ 307


>gi|300310132|ref|YP_003774224.1| type III secretion HrcU transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072917|gb|ADJ62316.1| type III secretion HrcU transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 371

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 172/351 (49%), Gaps = 16/351 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHV 64
           D+K E P+ KKIEDA  +G   +SR+ +   +++A +   L     +   ++++     +
Sbjct: 3   DDKNEEPTDKKIEDAKKKGQIAVSRDLARLVTLVAVMEAALAADSLWRGAVFNLMEGGVL 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            +    Q  + +      +L  ++  A  ++ P   +   +G    LI          ++
Sbjct: 63  GVGQDFQTAMNNQLTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIAT------EALE 116

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P   +++   GIK+I+S   LV    +  K  L+  ++  ++      +       P  +
Sbjct: 117 PKLDKLNPVNGIKQIFSKKKLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGGEPKDV 176

Query: 185 LYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSK--LKMSKQEIKDEIKQSYGNPI 241
            Y AF T+ R +  +I++    L V+D  ++  +++ K  L M ++EIK E K+S G+P+
Sbjct: 177 -YEAFVTLLRNIFHLIIVVCLVLGVID--YAVQKYFHKKDLMMDQEEIKREFKESEGDPM 233

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K ++K +AR          T +A  ++ NPTH+A+A+ Y   E   P+++AKG++ IA+
Sbjct: 234 VKGQRKQLARQWANEAPAAKTEKANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEIAQ 293

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            M   A+   IP+     LAR+L+     +  +P   Y+AVAQ +Y + H+
Sbjct: 294 AMIARAHACGIPVIRHVWLARTLYATCQDDMPVPRSSYQAVAQ-VYAVVHE 343


>gi|78224286|ref|YP_386033.1| flagellar biosynthesis protein FlhB [Geobacter metallireducens
           GS-15]
 gi|78195541|gb|ABB33308.1| Flagellar biosynthetic protein FlhB [Geobacter metallireducens
           GS-15]
          Length = 353

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 193/360 (53%), Gaps = 17/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL----FFFSPGIY 56
           MSE D   +KTE P+ K++++A  +G  P SR+ +   +++A ++ L     F F+  + 
Sbjct: 1   MSEED-KHSKTEQPTPKRLDEAKKKG-VPHSRDLTSTVTLIASMVALYTTGGFMFTT-LK 57

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
           S TS++     S    +L + S +  LL  L L   ++V P +L+ ++ G+ + + Q   
Sbjct: 58  STTSEI---FGSMGTFQLTE-SSVEMLLVKLFLVMLQVVGPFMLVVVIVGLFTTVAQVGF 113

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
            +N   +    ++++  E   ++++ ++ +   K+ +KI++VG +    + +    ++  
Sbjct: 114 SMNAERIAFKPEKLNPAENFGKLFNKDSFMEMAKATLKILIVGYMSYKIMRDELDGIIYL 173

Query: 177 ISANPHSILY---HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
              +   IL    H  F   K++I     +  L ++D+ +   ++  + KM+KQE+KDE 
Sbjct: 174 TDTDLSGILELFKHLCF---KLVIHTCGVLLILGIVDLVFVKWRFIERQKMTKQEVKDEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K+S G+P +K + + +   + + ++      A ++ITNPTH+A+AL+Y +    AP ++A
Sbjct: 231 KESEGDPKVKGKIRQMQFQQAQRRLRAVIPTADVVITNPTHFAVALKYDRLTMAAPTVLA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A+ ++ +A E+N+ + E   LAR L+ QV     IP   Y AVA+++  +Y  K
Sbjct: 291 KGADHMAQTIKAMARENNVMLVENRFLARELYAQVKEGEEIPEALYAAVAEVLAYVYSLK 350


>gi|296531764|ref|ZP_06894586.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
 gi|296267903|gb|EFH13708.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
          Length = 370

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 175/365 (47%), Gaps = 25/365 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    +   +A S +K++ A   G+ P+SRE S F          L+F +  +  +  
Sbjct: 1   MAEETGQEKTLDA-SPRKLQQARERGDLPMSREGSSFG---------LYFITLLLLWLAG 50

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS---------LSASRLVIPGLLLFMMFGIGSYL 111
            L     SA    L +       LT             + + +++P   L +   +  +L
Sbjct: 51  GLIGQRFSAVLLPLLEQPEAFLELTEAGHRRAALAVVEALALVLLPVFALLLAGSLLPHL 110

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTE 168
           +Q   VL    ++P    +S+  G +R++ +  L  F K   K   V     ++   L E
Sbjct: 111 LQNNVVLAPQRLEPKLSHLSIISGFRRLFGLKGLFEFAKGLTKAGAVAGACWLVAAPLLE 170

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
               +    +A    ++  A   +   L+ I L  A + +LDI +   ++  + +M+ QE
Sbjct: 171 GSPQLAALDAAAFGPLVLRALAGM---LLAITLVAAGVAILDISFQRFEYARRQRMTHQE 227

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +++E++ + G+P +K   K   +   + +M+     AT+++TNPTHYA+ALRY +  + A
Sbjct: 228 MREEMRATDGDPHVKAALKKKRKQLSQRRMLADVPGATVVVTNPTHYAVALRYERGRDVA 287

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV VAKG + +A ++R +A    + + E+ +LAR+L   V +   IPP  ++AVA++I  
Sbjct: 288 PVCVAKGVDRMALRIRDLARGAGVAVMEDRALARALHASVEVGQVIPPAHFEAVAKIIGI 347

Query: 349 IYHKK 353
           ++ ++
Sbjct: 348 VWAQQ 352


>gi|332187868|ref|ZP_08389601.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17]
 gi|332012029|gb|EGI54101.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17]
          Length = 375

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 170/360 (47%), Gaps = 25/360 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      KTEAP+ K+ + A  +G    SR+ +    ++A + +L+F   P +     
Sbjct: 1   MSEGG---EKTEAPTQKRRQKAREDGQILRSRDLAAALVMMAGIAWLMFA-GPTLLGACK 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LFMM---------FGIGSY 110
            +       +   +ED      L+      A   ++P L  LF +          G+GS 
Sbjct: 57  AVMAASFQFSHADVEDFEPFRPLM-----EAGWKLLPSLASLFAVTIVATIASQAGLGSL 111

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                   N   + P   +++   G+KRI+ +       KS +KI+L+G +    L  + 
Sbjct: 112 Q------FNPKALTPKPSKLNPASGLKRIFGMQGWTELGKSLLKIVLLGALGGYMLWTSS 165

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
              L    ++ +S +     T   +L+++   +  +   D+     Q  SKLKM+KQEIK
Sbjct: 166 RATLGLAQSDLNSAIGSLGGTFITILLVMGFGLVLIAGFDVPIQIFQLLSKLKMTKQEIK 225

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE K+S GNP  K   ++  R      +  A   A +I+TNPTH+A+ALRY + +++ PV
Sbjct: 226 DEHKESEGNPEAKAHIRAKQREMSHRAVRAAVQEAHVILTNPTHFAVALRYERGKDEVPV 285

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +VAKG+   A  +R++A E   P+ E P LAR+++        +    Y+A+A ++  ++
Sbjct: 286 VVAKGRGATALAIRELAAELATPVLEYPQLARAVYYTSREGQEVRADLYQAIAVVLAFVF 345


>gi|21230687|ref|NP_636604.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769318|ref|YP_244080.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112276|gb|AAM40528.1| HrcU protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574650|gb|AAY50060.1| HrcU protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 357

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 41/355 (11%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFF 50
           D KTE P+ KK++DA  +G  PIS +                  S F   L  L+ + F 
Sbjct: 3   DEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGFD 62

Query: 51  FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
           F+    + T D     A+A  R L  I     LLT          +P +   +  G+   
Sbjct: 63  FT----TNTRD-----ATALHRALGRIGIQGVLLT----------LPFVTACLAAGLIGT 103

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
            +Q     +L  V P F  ++   G+K+++S+ +L+N +K  +K  ++G ++   L    
Sbjct: 104 FVQTGLNASLKPVTPKFDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALM 163

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQE 228
            T++      P  I    +  +  +  + +L    +   D  WS   W      +MSK E
Sbjct: 164 PTIIGLAYQPPADIAQIGWRALGILCALAVLVFVLVGAAD--WSVQHWLFIRDKRMSKDE 221

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
            K E K+S G+P +K ++K  A+  +     E  ++A +++ NPTHYA+AL Y       
Sbjct: 222 QKREHKESEGDPEVKGKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGL 281

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           P +VAKG +  A ++R  A+   IPI   P LAR+L  +V +  A+P   ++ VA
Sbjct: 282 PQVVAKGVDEGALELRAYAHNQGIPIVANPPLARALH-EVELGEAVPESLFETVA 335


>gi|300871796|ref|YP_003786669.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli
           95/1000]
 gi|300689497|gb|ADK32168.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli
           95/1000]
          Length = 404

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 193/361 (53%), Gaps = 30/361 (8%)

Query: 8   DNKTEAPSSKKIEDALNE-GNAPISRE--ASLFSSILACLIYLLFFF-----SPGIYSVT 59
           + +TE P+ +K   A  E G    S E   +L   +   LI LL  +     S     + 
Sbjct: 47  EGRTELPTERKKRRAREEEGRVVNSVEINQTLVLGVTTVLIALLIGYLTNTLSQFFVDIL 106

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           + +    A+ T   L DI   + LL  ++ +A  +++  L++    G+G  L Q   +  
Sbjct: 107 NRISNADATMTMDGLPDIFIEIVLL--IAKTAGIVLLTALII----GVGVNLAQTQFLFT 160

Query: 120 LNHVKPSFKRVS-----LREGIKRIY-SINNLVNFMKSFVKIILVG--TIITISLTEN-Y 170
              +KP+FKR++      +E   R++ S  NL+N  K   K+I++G  T  TI+   N  
Sbjct: 161 TKKLKPNFKRIAPTWSNFKE---RVFISSQNLMNLAKILFKMIVIGILTFTTINGRRNDL 217

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           F M+    A   ++    FF V +++  +++F+  + V+D  +   Q+ + LKM+K E+K
Sbjct: 218 FNMVHMELAQAMNVF---FFIVLEMIGKVMIFMIIVAVVDYYFQRKQYINSLKMTKHEMK 274

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           +E K+  G+P++KN+ + +AR  +   M+++   A +IITNPTH+A+AL+Y Q+ + AP+
Sbjct: 275 EEFKEMEGDPLVKNQLQEMARKIVSRTMLKSVPEADVIITNPTHFAVALKY-QSGDYAPI 333

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           + AKG + IA K+++IA EH + I E   LAR L+  V I   IP   +  V++++ ++Y
Sbjct: 334 VTAKGVDNIALKIKEIAKEHEVEIVENKPLARELYYNVDIGQYIPEKLFHVVSRILGEVY 393

Query: 351 H 351
            
Sbjct: 394 R 394


>gi|171915731|ref|ZP_02931201.1| Type III secretory pathway, component EscU [Verrucomicrobium
           spinosum DSM 4136]
          Length = 347

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 177/342 (51%), Gaps = 11/342 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ KK+ DA  +G    S++    +  +A  + +   + P +     +L +L   
Sbjct: 3   EKNEPPTPKKLRDARKKGQVAKSQDVGTAALTIASFVTIGIMW-PSMVEQAKELILLPVQ 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVI----PGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              +  +  S        L L+  R V+    P L++ M+ G+ +   Q   +L    +K
Sbjct: 62  YYDKPFQQGS------MELMLAIGRKVLLMSLPILMVVMVVGLAAGFGQIGFMLTFEPLK 115

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  K+++  +  K+I+S+ +LV  +KS +K+ ++G II      +   +         S+
Sbjct: 116 PELKKLNPMDKAKQIFSMKSLVELLKSTIKVGVIGIIIYYVTKASLDPLTRLPYGGEESV 175

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L      ++ + + +++    +   D  +  +Q   +LKMSK E+K E K+S GNP IK 
Sbjct: 176 LTALQPMIKALTMNVVMAYIIIAAADFFFQKYQHIKQLKMSKDEVKREYKESEGNPEIKG 235

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           ++K +A+   +   M  T +A++++TNPTH A+A+ Y + ++  P ++AKG++ +A++M 
Sbjct: 236 KRKQLAQEAAQSDTMGRTRKASVVVTNPTHLAIAIYYDENDDKMPRVLAKGEDHVARRMV 295

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++A E  IP+ +   LAR+L++ V I+  +P    + +A+++
Sbjct: 296 EVAREEGIPVMQHVPLARALYENVDIDRFVPSDLIEPMAEVL 337


>gi|115360600|ref|YP_777737.1| type III secretion system protein HrcU [Burkholderia ambifaria
           AMMD]
 gi|115285928|gb|ABI91403.1| type III secretion exporter [Burkholderia ambifaria AMMD]
          Length = 352

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 23/349 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK++    EG   +++ + L    +A L  ++   + G + +   L  ++ 
Sbjct: 3   DEKTEEPTDKKLDKVREEGQ--VAKSSDLVE--VASLGSIVLVLTAGQHYLADTLRAVVK 58

Query: 68  SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            A       R+L+D+S     L H+ + A  L+     + ++    +   Q    ++L  
Sbjct: 59  EAIDFTHGPRELQDLS---VALVHMGVQALGLLCGIAAVALVAAFLALAPQTGLKISLKA 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TI-SLTENYFTMLDFISA 179
           V P    VS   G +RI+S+N+ ++ +K  VK  ++  ++  TI S      + LD    
Sbjct: 116 VMPKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDRSVP 175

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSY 237
              ++L+     V  V++ + +FIA +   D  +   +W    K +MSK E+K E K+S 
Sbjct: 176 QLIAVLWSVLMHV--VVVALGVFIA-IGAFD--YKLQKWLFIRKNRMSKDEVKREHKESD 230

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K  +K +AR   +       SRA +++ NP HYA+ALRY  TE   PV++AKG +
Sbjct: 231 GNPEVKGERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGVD 290

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             A ++R+ A    +PI   P +AR L K VP+N  IP   ++ VA ++
Sbjct: 291 EQALRLRQQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 338


>gi|126462469|ref|YP_001043583.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104133|gb|ABN76811.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17029]
          Length = 380

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 177/361 (49%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E +    KTE P+ K+ E A  +G+   S+E  +F+++   L  L+      P +   
Sbjct: 1   MAEGEDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117
            S   V+   A      D+  I   +  L  +   ++I GL++ +       L+Q  +  
Sbjct: 61  WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112

Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           +N +    SFK  R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +  
Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+
Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232

Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290
           S G+P +K R    Q   +R+  R +  ++   +AT I+TNPTH+A+ALRY+  E  APV
Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++A G+  +A  + +   +  +     P LAR+L+    I   IP   Y AVA ++  +Y
Sbjct: 293 ILAMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVY 352

Query: 351 H 351
            
Sbjct: 353 R 353


>gi|237508977|ref|ZP_04521692.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|235001182|gb|EEP50606.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 352

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 178/351 (50%), Gaps = 21/351 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62
           D KTE P+ KK+ DA  +G   +SR   L      S+ +  L+    +F   + ++ +  
Sbjct: 3   DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADYFGDAMRALVNGA 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              +++     L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  
Sbjct: 61  LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P 
Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L   F   R++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G
Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG + 
Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDE 291

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|103488400|ref|YP_617961.1| flagellar biosynthesis protein FlhB [Sphingopyxis alaskensis
           RB2256]
 gi|98978477|gb|ABF54628.1| type III secretion exporter [Sphingopyxis alaskensis RB2256]
          Length = 379

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 176/359 (49%), Gaps = 18/359 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D KTE P++KK  D+  EG+  +SRE +    +LA   +++   + G + V S
Sbjct: 1   MAEGPDKDQKTEQPTAKKRADSTREGDVLMSRELATALMMLAAAGWIV---AAGGWFVQS 57

Query: 61  --DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             DL     + T   + D +    L+ +     + +++P   L  +F +        P +
Sbjct: 58  AGDLVRRGLTLTAADVADFAPGEALMRN----GAEILLP---LTSLFALALGAAVAGPAM 110

Query: 119 ----NLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
                       FK  R++   G+KR++ +       K+  K+IL+G I    +  +   
Sbjct: 111 LGSMGWRGKALHFKGNRINPMSGLKRMFGMQGATELGKAIAKVILLGGIGYWLVARSLPA 170

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           ++    ++  + +  A   +   ++ +   +  + ++D+   + Q   +L MSK EIKDE
Sbjct: 171 IMSMAGSDLIAAIGLAGKAIGHAMLALAGGLVVIALIDVPVQWFQRNKRLMMSKHEIKDE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           ++QS G P +K  Q+  A   +     +A S AT+++TNPTH+++ALRY    + APV+V
Sbjct: 231 MRQSDGAPELKQAQRQRAHEILSGSARKAVSEATVVLTNPTHFSVALRYRPGTDAAPVVV 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A+G+  +A  +R++A   N+P+ E P L R+++        IP   + AVA ++  ++ 
Sbjct: 291 ARGRGDVALSIRELARAANVPMLEYPQLTRAIYFTARAGRTIPEELFVAVATVLAFVFQ 349


>gi|284989537|ref|YP_003408091.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160]
 gi|284062782|gb|ADB73720.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ ++++ A  EG  P ++E   +    A   +LL       +    
Sbjct: 1   MAKDGPGGEKTEDPTPQRLKKARKEGQIPRTQELGTWVGAAAA-SFLLPMLVRNAFDQVG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + V + +  +    ++  +  LL     +   + +P  +  M+ G+ +   Q    ++ 
Sbjct: 60  AMFVQVGAVVE--TPEVEAVTALLGQALDTFVTVALPMAVALMVVGVAASAAQGGVTVSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+ K+++   G+KR++  + L    K+ +K   +GT++ ++ ++    ++    A 
Sbjct: 118 KPMKPTLKKLNPFPGMKRMFGGHGLWEATKAVIKTAALGTVVVVT-SDRAQQLVSSAGAL 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATL--TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           P S +  A FT   VL++ ++ +  L   V D      +   +L+M+K EI+ E K S G
Sbjct: 177 PLSAIT-ATFTDSAVLMIRVVAVTGLVIAVADYVIVRKRTMKELRMTKYEIQQEHKNSEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K ++++   +  R++MM   + A +++ NPTH A+AL+Y + +  AP +VAKG + 
Sbjct: 236 DPHVKAQRRATQMAMSRNRMMAEVADADVLLVNPTHVAVALKY-EPDRGAPRVVAKGADE 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A K+R+ A E  +P+ ++  LAR+L     I   +P   + AVA+++
Sbjct: 295 VAAKLRERAAEARVPLVQDVPLARALHASCEIGQEVPAQLFTAVARVL 342


>gi|109947223|ref|YP_664451.1| flagellar biosynthesis protein FlhB [Helicobacter acinonychis str.
           Sheeba]
 gi|109714444|emb|CAJ99452.1| flagella-associated protein [Helicobacter acinonychis str. Sheeba]
          Length = 358

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 176/356 (49%), Gaps = 39/356 (10%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREA-------SLFSSILACLIYLLFFFSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E        +   SI    I+ +  FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             D  +  +  + ++L            L+     L++P L++ +M    S ++Q   + 
Sbjct: 62  LKDFSLDFSRESVQEL---------FNQLAKDTFLLILPILIILVMVAFLSNVLQFGWLF 112

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P   +++   G+K ++S+  L++           G++IT+ +   +F      S
Sbjct: 113 APKAIEPKLSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFS 161

Query: 179 ANPHSILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                + + A   ++  L+             L     L  +D+     Q+ + LKM+KQ
Sbjct: 162 LFLGELNHAALLNLKDQLLWFKNKALLLISSLLFLFFILAFIDLIIKRRQYTNSLKMTKQ 221

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+KDE KQ  G+P +K + +        +KMM+   +A +++TNPTHYA+AL++   E+ 
Sbjct: 222 EVKDEYKQQEGSPEVKAKIRQTMMRNAANKMMQEIPKANVVVTNPTHYAVALKF-DEEHP 280

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            PV+VAKG + +A +++ IA E++I I E  +LAR L++ V +N+AIP   ++AVA
Sbjct: 281 VPVVVAKGTDHLAIRIKGIAREYDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 336


>gi|119947198|ref|YP_944878.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37]
 gi|119865802|gb|ABM05279.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37]
          Length = 374

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 181/349 (51%), Gaps = 13/349 (3%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF--SPGIYSVTSD 61
           +D   +KTE  S++K++ +  EG    ++E   F+S    L + L+F+     I     +
Sbjct: 2   SDNAQDKTEQASAQKLKKSKGEGQIARAKE---FASACMLLGFCLYFYLSFERIAEAALN 58

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L  L  S +   L+D   ++  L     +   +  P + + ++  +   L+    V +  
Sbjct: 59  LFKLNFSFSVATLQDNDQMLIRLNKSLFTLIEIFFPFIFVVVLSTLIGSLVLGGWVFSFK 118

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF----I 177
            ++P   ++S  +GIKR++S+  LV  +KS +K+ ++  ++   L+ N   ML      I
Sbjct: 119 TIQPKLDKLSFLKGIKRMWSLKTLVELIKSILKVAVIVYLLYSFLSNNLLYMLSLQRLPI 178

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            A+  ++L     T    +I ILL      ++D+ +  +++  ++KMSKQE+K+E KQ+ 
Sbjct: 179 EASSIAVLTK-LATYSLYIIAILLLYG---LIDLPYQLYEFNKQMKMSKQELKEEHKQAE 234

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P +K R + I +   +  + +    A +II NPTHYA+A++Y     +AP LVAKG +
Sbjct: 235 GRPEVKQRIRQIQQQMSQRAITKTVPDADVIIMNPTHYAVAIKYDPKRAEAPFLVAKGND 294

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             A  +++IA ++N+ +   P+LAR+++    +   IP   + A+A ++
Sbjct: 295 QTALFIQRIALDNNVEVVISPALARAIYHTTQLEQMIPNQLFVAIAHVL 343


>gi|319764528|ref|YP_004128465.1| type iii secretion exporter [Alicycliphilus denitrificans BC]
 gi|330826744|ref|YP_004390047.1| type III secretion exporter [Alicycliphilus denitrificans K601]
 gi|317119089|gb|ADV01578.1| type III secretion exporter [Alicycliphilus denitrificans BC]
 gi|329312116|gb|AEB86531.1| type III secretion exporter [Alicycliphilus denitrificans K601]
          Length = 386

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 173/346 (50%), Gaps = 15/346 (4%)

Query: 15  SSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT 70
           + +K++ A ++G A  SR+ S    L +  LA L+   +F      ++   L V  A+  
Sbjct: 12  TERKLQKARSDGQAARSRDLSHLAILGTGALALLVLAPWFVEYLQRALRQQL-VFNAATV 70

Query: 71  QRKLEDISHIVFL--LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           Q   E +S +  +  +  L+ +A  L+  G  L    G G +      + +L  + P F 
Sbjct: 71  QMPGEMLSRLRTMAGVGLLASAAFALLTSGAALLSAIGAGGW------IFSLKPITPQFN 124

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SANPHSILYH 187
           R++   G   ++S   + N  K  +   ++  +    +  +   M   +   +P S L H
Sbjct: 125 RLNPLSGFANLFSKQQMANVAKMVLMTGILAAVAWNFMGRSIEQMAALVLQPSPLS-LRH 183

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   +   + ++LL +    V+D+      + S+LKMS +E+K E K+S GNP +K RQ+
Sbjct: 184 AGQWIVSGMSLLLLVVFLFAVIDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKGRQR 243

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
             AR       + A  +A  ++ NPTHYA+AL+Y +    AP +V+KG +L+A ++R++A
Sbjct: 244 QRAREIADRASIAAVPKADFVVMNPTHYAVALKYDEASMGAPQVVSKGTDLLAFRIRELA 303

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +H +P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 304 QQHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349


>gi|119385353|ref|YP_916409.1| flagellar biosynthesis protein FlhB [Paracoccus denitrificans
           PD1222]
 gi|119375120|gb|ABL70713.1| type III secretion exporter [Paracoccus denitrificans PD1222]
          Length = 368

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 172/361 (47%), Gaps = 32/361 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP---GIYS 57
           MS  +  D + +A  SK +  A  EG+ P S E      + + L+YL F+F+     I++
Sbjct: 1   MSRENNDDKQFDATESK-LRKARQEGDVPRSAE------LQSALMYLGFWFAALFATIWA 53

Query: 58  VTSDLHVLLASATQRKLEDISH--IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           V + L +           D     +  L   L+  A  + + G+ +  +  +   + QR 
Sbjct: 54  VPAWLGMAARVLGGEPWPDAEGRAVADLARALAGQAGLVTVAGVAIMALPILLGMVAQRS 113

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG--------TIITISLT 167
            VL    + P FKRV+  +   + +  + LV F  S  K +LVG        +++   +T
Sbjct: 114 VVLTPKKLLPDFKRVNPVKNAAQKFGKSGLVTFAISLGKALLVGVGGWFLYASLLAWLMT 173

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                 L ++              +R+ +++ L   A   ++D+ W   ++  + +MS+Q
Sbjct: 174 SGAMRDLQWVEG--------LGLILRRAVLLALGIGAIFAIIDLIWKRLEYLKRHRMSRQ 225

Query: 228 EIKDEIKQSYGNPIIK--NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           E++DE K++ G+P +K   RQK +    +   M+    +A +II NPTHYA+AL + +  
Sbjct: 226 EMQDEHKENEGDPHLKAARRQKGV--DIVLSAMLADVQKADVIIVNPTHYAVALEWKRGS 283

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             APV +AKG + +A+++R+ A +H +PI+ +P  AR+L   V I   I    +  VA  
Sbjct: 284 GRAPVCLAKGVDDVARRIRERAQDHRVPIWSDPPCARALHATVEIGQEIKAEHFAPVAAA 343

Query: 346 I 346
           I
Sbjct: 344 I 344


>gi|108758626|ref|YP_630670.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
 gi|108462506|gb|ABF87691.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
          Length = 359

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 174/369 (47%), Gaps = 40/369 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    KTE PS KK++D+  +G    S++ S    +L            G+ +V     
Sbjct: 2   SDESGEKTEEPSQKKLDDSRKKGQVWKSKDLSGVGVLLV-----------GLAAVKGSWD 50

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118
           +L    T       S  +F   HL+      V  G LLF+  G+ + ++  +PVL     
Sbjct: 51  MLETELT-------SLFLFSFDHLTNPVDLSVATGQLLFL--GLRAVVLVSLPVLAGGAI 101

Query: 119 --------------NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
                          ++ + P  ++++  +G+K +++   +V  +K+ +KI +   ++  
Sbjct: 102 VGGLMEYLQVGTLFTMDPLIPKMEKLNPIQGMKNLFNKKAIVELLKNLIKISVTAYVVYG 161

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
            + ++   + + +  +   I+      V +V   + L      V D+ W    +   + M
Sbjct: 162 VVRDSMPMVAETLRQDTRGIMAIMGELVTRVATRVALLFVLFGVFDVWWQRKSFMKDMMM 221

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +K+E+K E KQS G+P  K ++K + +  +    MEA   A +I+TNP H A+AL+Y + 
Sbjct: 222 TKEEVKKEYKQSEGDPHHKAKRKEMHQEIMEGAQMEAVREADVIVTNPDHVAVALKYDRE 281

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           ++ AP ++A+G +  A++++ IA E ++P      LA +L + V +   +P   Y AVA+
Sbjct: 282 KDGAPRVLARGIDFKAERIKAIAREQDVPTLRNVPLAHALLR-VEVGHEVPEELYDAVAE 340

Query: 345 LIYKIYHKK 353
           ++  +Y  K
Sbjct: 341 VLNFVYGLK 349


>gi|326404521|ref|YP_004284603.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum
           AIU301]
 gi|325051383|dbj|BAJ81721.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum
           AIU301]
          Length = 324

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 1/232 (0%)

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           N   +  +F R++   GI +++   NL    +S +K+  +G  + + +      +   + 
Sbjct: 84  NWGAIGLNFARLNPLAGIGKLFGTPNLAASGQSILKLAAIGAALYVVMDARLHGLEAMLL 143

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  ++L   F ++  +L   ++       +D     +++ + +KMS+QE+KDE K++ G
Sbjct: 144 GSEKTLLAAIFGSIVAILSAAVMIQVVSGAVDFVLVRNRFSTSVKMSRQEVKDEQKETDG 203

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P ++ R K+   +  +  +  A +RA ++ITNPTHYA+AL Y   + +AP +VAKG + 
Sbjct: 204 DPHVRARIKAARSALAKRSLNVAMARAAVVITNPTHYAVALEYRAGQAEAPKIVAKGADE 263

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            A ++R +A E  IPI   P LAR+LF+Q  + + I P  Y+AVA++I  I+
Sbjct: 264 RAARIRDLAREARIPIVANPPLARALFQQ-DVETEILPEHYRAVAEIIAYIW 314


>gi|256376454|ref|YP_003100114.1| type III secretion exporter [Actinosynnema mirum DSM 43827]
 gi|255920757|gb|ACU36268.1| type III secretion exporter [Actinosynnema mirum DSM 43827]
          Length = 363

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 171/338 (50%), Gaps = 4/338 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           + TE P++KK+ DA  EG    + +   +  IL     L    +  +  +   L  L  +
Sbjct: 7   DATEEPTAKKVRDAKREGRMARTPDLGTWLGILGATWTLPMTLT-SLLDIGQGL--LKKA 63

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A      + +  V ++    L  +  V+P  L  ++  + +  +Q    ++    KP F 
Sbjct: 64  AGFMAAPEPALAVAIVKDGVLDGALAVLPLSLTIIVATLVAAGLQGTLRMSTKQFKPKFT 123

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  +GIK ++  ++L   +K+ +K  L+  ++ +S++    +++   + +  ++   A
Sbjct: 124 QLNPLKGIKNMFGPHSLWEALKTLIKTSLLAGLLYVSVSGLVPSVVASGTLSLAALTDVA 183

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
             T   +L +  +    + V+D   +  + + +LKM+KQE+KDE KQS G+P +K   +S
Sbjct: 184 TGTAMSLLRLAAIGGLVMAVVDYAVAKRRIHKELKMTKQEVKDEHKQSEGDPQLKGAIRS 243

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
                 R++MM     A +++ NPTH A+ALRY      AP +VAKG   IA K+R++A 
Sbjct: 244 KQMQMSRNRMMAEVPNADVVLVNPTHIAVALRY-DPARGAPRVVAKGAGAIATKIRELAT 302

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           EH +PI ++  LAR+L K   +   IP   +  VAQ++
Sbjct: 303 EHRVPIVQDVPLARALHKACEVGHEIPFEMFGPVAQVL 340


>gi|148261120|ref|YP_001235247.1| type III secretion exporter [Acidiphilium cryptum JF-5]
 gi|146402801|gb|ABQ31328.1| type III secretion exporter [Acidiphilium cryptum JF-5]
          Length = 335

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 1/232 (0%)

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           N   +  +F R++   GI +++   NL    +S +K+  +G  + + +      +   + 
Sbjct: 95  NWGAIGLNFARLNPLAGIGKLFGTPNLAASGQSILKLAAIGAALYVVMDARLHGLEAMLL 154

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  ++L   F ++  +L   ++       +D     +++ + +KMS+QE+KDE K++ G
Sbjct: 155 GSEKTLLAAIFGSIVAILSAAVMIQVVSGAVDFVLVRNRFSTSVKMSRQEVKDEQKETDG 214

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P ++ R K+   +  +  +  A +RA ++ITNPTHYA+AL Y   + +AP +VAKG + 
Sbjct: 215 DPHVRARIKAARSALAKRSLNVAMARAAVVITNPTHYAVALEYRAGQAEAPKIVAKGADE 274

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            A ++R +A E  IPI   P LAR+LF+Q  + + I P  Y+AVA++I  I+
Sbjct: 275 RAARIRDLAREARIPIVANPPLARALFQQ-DVETEILPEHYRAVAEIIAYIW 325


>gi|221069313|ref|ZP_03545418.1| type III secretion exporter [Comamonas testosteroni KF-1]
 gi|220714336|gb|EED69704.1| type III secretion exporter [Comamonas testosteroni KF-1]
          Length = 393

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 2/238 (0%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           + +   ++P F +++   G+K ++S   L   +K     I++G +    ++ N    +  
Sbjct: 113 IFSFKPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFLTIVLGFVAWKYMSAN-IAEIAS 171

Query: 177 ISANPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +SA P  + L      +   + ++L+ +  + ++D+      + S+LKMS +E+K E K+
Sbjct: 172 VSAQPSPMALAMVGSWLTTGVTLLLVVVLLVALIDVPLQAFLFKSRLKMSHEEVKQEHKE 231

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S GNP +K + +   R       + A  RA  ++TNPTHYA+ALRY      AP ++AKG
Sbjct: 232 SEGNPQLKGKIRQKQREIADRASVSAVPRADFVVTNPTHYAVALRYDDATMAAPQVIAKG 291

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +L+A K+R+IA  H IP+ E P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 292 TDLVALKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349


>gi|53722427|ref|YP_111412.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           K96243]
 gi|52212841|emb|CAH38875.1| putative type III secretion-associated protein [Burkholderia
           pseudomallei K96243]
          Length = 352

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62
           D KTE P+ KK+ DA  +G   +SR   L      S+ +  L+     F   + ++ +  
Sbjct: 3   DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              +++     L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  
Sbjct: 61  LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P 
Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L   F   R++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G
Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG + 
Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDE 291

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|145297440|ref|YP_001140281.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850212|gb|ABO88533.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 378

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 177/349 (50%), Gaps = 14/349 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+N A D KTE  SS+K+  A  EG    S+E S    +L   + + +   P      +
Sbjct: 1   MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQWMV-PSFGHFFA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L         +   D   ++       LS   +++P      +  +   ++    VL  
Sbjct: 59  ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + PS ++++  +G+KR+ S ++L+  +KS +KI+L+G+ + + L   +  ++      
Sbjct: 119 KKLLPSAEKLNPLKGLKRMLSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYG 238
           P + +  A   + +  I++      + VLD+   Y +W    +L+M+KQE+KDE K S G
Sbjct: 179 PQAAMEQALQILSQAFILLGSVQMLIAVLDV--PYQRWSLNKQLRMTKQEVKDEHKNSEG 236

Query: 239 NPIIKNR----QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            P IK +    Q  +AR+RI  ++     +A +II N THYA+A++Y     +AP ++AK
Sbjct: 237 RPEIKAKIRQVQGMLARARIEQRV----PQADVIIVNTTHYAVAIKYDPERANAPYVIAK 292

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           G + +A+++R++A +H+  +   P L R+++    ++  +P   Y AVA
Sbjct: 293 GVDGMAERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVA 341


>gi|3435112|gb|AAC32325.1| flagellar protein FlhB [Rhodobacter sphaeroides]
          Length = 376

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 176/361 (48%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E D    KTE P+ K+ E A  +G+   S+E  +F+++   L  L+      P +   
Sbjct: 1   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFATLAGGLALLMMIEGLLPALVRG 60

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPV 117
            S   V+   A      D+  I   +  L  +   ++I GL++ +       L+Q  +  
Sbjct: 61  WSGYLVIEPGA------DLERIA--MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGG 112

Query: 118 LNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           +N +    SFK  R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +  
Sbjct: 113 INFSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDR 172

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+
Sbjct: 173 LWTAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKE 232

Query: 236 SYGNPIIKNR----QKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPV 290
           S G+P +K R    Q   +R+  R +  ++   +AT I+TNPTH+A+ALRY+  E  APV
Sbjct: 233 SNGSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPV 292

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++A G+  +A  + +   +  +     P LAR+L+    I   IP     AVA ++  +Y
Sbjct: 293 ILAMGKGPMALDIIERGRKAGVGTVRIPLLARALYFTGDIGQEIPDGLDGAVAVVLAHVY 352

Query: 351 H 351
            
Sbjct: 353 R 353


>gi|126176175|ref|YP_001052324.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
 gi|125999380|gb|ABN63455.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
          Length = 376

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 166/344 (48%), Gaps = 13/344 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHVL 65
           +KTE  + +K   A  EG  P S++ +  + ++ C   L     +F+  +  +T   ++L
Sbjct: 8   DKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTNADWFATRVSGLTK-YNML 66

Query: 66  LASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRI--PVLNLNH 122
           L  A      D+     ++ HL  S    L I G L  M+  + +        P+ N  +
Sbjct: 67  LTRA------DLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNFGN 120

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
               + R+    G+ RI+S  +LV  +KS +KI+L+  I+ + L  +   +L +      
Sbjct: 121 ANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRPID 180

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             +      + + +  +   +  +  +D+ + Y     +L+MS+QE+KDE  Q  G P I
Sbjct: 181 EAVRDGINLLSQDMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKPEI 240

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + + I +   R +      +A +++ NPTHYA+AL+Y     DAP ++ KG   +A  
Sbjct: 241 KAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELALY 300

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           MR++A +H+I I + P L R+++    ++  IP   + A+A ++
Sbjct: 301 MRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVL 344


>gi|304412527|ref|ZP_07394133.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|307307186|ref|ZP_07586924.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
 gi|304349169|gb|EFM13581.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|306910425|gb|EFN40856.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
          Length = 376

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 166/344 (48%), Gaps = 13/344 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLHVL 65
           +KTE  + +K   A  EG  P S++ +  + ++ C   L     +F+  +  +T   ++L
Sbjct: 8   DKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTNADWFATRVSGLTK-YNML 66

Query: 66  LASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRI--PVLNLNH 122
           L  A      D+     ++ HL  S    L I G L  M+  + +        P+ N  +
Sbjct: 67  LTRA------DLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNFGN 120

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
               + R+    G+ RI+S  +LV  +KS +KI+L+  I+ + L  +   +L +      
Sbjct: 121 ANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRPID 180

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             +      + + +  +   +  +  +D+ + Y     +L+MS+QE+KDE  Q  G P I
Sbjct: 181 EAVRDGINLLSQGMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKPEI 240

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K + + I +   R +      +A +++ NPTHYA+AL+Y     DAP ++ KG   +A  
Sbjct: 241 KAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELALY 300

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           MR++A +H+I I + P L R+++    ++  IP   + A+A ++
Sbjct: 301 MRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVL 344


>gi|149203120|ref|ZP_01880091.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035]
 gi|149143666|gb|EDM31702.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035]
          Length = 362

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%)

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
           LLL M+  + + + QR  V+    ++P   R++  E  K  +    L  F KSF K+ L 
Sbjct: 101 LLLPMVMALAAVIAQRAFVVAPTKIEPRVSRINPVENAKNKFGATGLFEFAKSFGKLFLY 160

Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
             ++   LT     M+  + A    I       + + +I++LL    +  LD  W Y   
Sbjct: 161 SLLLGGFLTYRLPEMMSTLHAEAPIIGAVMGKLIIEFMIIVLLISLAIGGLDYLWQYFDH 220

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
             + +MS ++++DE+KQ+ G+P +K +++  A      +MM     A ++I NPTH+A+A
Sbjct: 221 LRRQRMSHKDLRDELKQNDGDPAVKQQRRRRAMELASGRMMADVPTADVVIVNPTHFAVA 280

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           L++ +    AP  VAKG + IA  +R +A E  +PI E+   AR+L     I   I P  
Sbjct: 281 LKWSRKPGAAPTCVAKGMDHIALAIRDLARESGVPILEDAPTARALHATTEIGREIDPAH 340

Query: 339 YKAVA 343
           Y AVA
Sbjct: 341 YAAVA 345


>gi|126442638|ref|YP_001062991.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           668]
 gi|254194161|ref|ZP_04900593.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|254301605|ref|ZP_04969049.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|126222129|gb|ABN85634.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 668]
 gi|157811543|gb|EDO88713.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|169650912|gb|EDS83605.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
          Length = 352

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62
           D KTE P+ KK+ DA  +G   +SR   L      S+ +  L+     F   + ++ +  
Sbjct: 3   DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              +++     L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  
Sbjct: 61  LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P 
Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L   F   R++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G
Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG + 
Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDE 291

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|48479060|gb|AAT44853.1| transmembrane protein [Burkholderia pseudomallei]
          Length = 352

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62
           D KTE P+ KK+ DA  +G   +SR   L      S+ +  L+     F   + ++ +  
Sbjct: 3   DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              +++     L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  
Sbjct: 61  LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V+P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P 
Sbjct: 116 VRPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L   F   R++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G
Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K   K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG + 
Sbjct: 232 DPLLKGECKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDE 291

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|260429624|ref|ZP_05783601.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45]
 gi|260420247|gb|EEX13500.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45]
          Length = 365

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 167/357 (46%), Gaps = 22/357 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  D KT  PS +K+E+A  +G  P S +    +  L  L   L      +    +
Sbjct: 1   MAEDDGGD-KTHEPSPRKLEEARRKGEIPRSPDMLTAACYLGMLATGLALGGGSVMGFGN 59

Query: 61  DLHVLLASATQ------RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            L  L+    +        +        LL  ++     L +P L + +     +    R
Sbjct: 60  ALLPLIEQPDRLVPLFFNDMASAPSGGILLAAITPVLPWLGVPALAVLL-----TLFATR 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V   + +     R+S  E  K  +    L  F+KS  K++L   ++   L+    T L
Sbjct: 115 GLVFTASKLSLKASRLSPVENAKNKFGRRGLFEFVKSLAKLVLYSVLLGFFLS----TRL 170

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG-----WSYHQWYSKLKMSKQEI 229
           D I+    S  + A   +   L++ LL IA +  + +G     W   +   + +MS++E+
Sbjct: 171 DEIAGIGRSSAHEATALMAD-LMLRLLGIAAMIAVGLGTIDYLWQRAEHMRRNRMSQKEL 229

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +DE K++ G+P+ K  +++ A+    ++MM     A ++I NPTHYA+AL++ +   +AP
Sbjct: 230 RDEYKEAEGDPMFKQHRRARAQEIAMNRMMVDVPDADVVIVNPTHYAVALKWSRQPGEAP 289

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           V VAKG + IA+++R+IA +  +PI  +P  AR++     I   I    Y+ VA  I
Sbjct: 290 VCVAKGVDEIARRIREIAADSGVPIHSDPPTARAIHATTEIGDQIAAEHYRPVAAAI 346


>gi|264676579|ref|YP_003276485.1| type III secretion exporter [Comamonas testosteroni CNB-2]
 gi|262207091|gb|ACY31189.1| type III secretion exporter [Comamonas testosteroni CNB-2]
          Length = 393

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 22/248 (8%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           + +   ++P F +++   G+K ++S   L   +K     I++G           F    +
Sbjct: 113 IFSFKPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLG-----------FVAWKY 161

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIAT-----------LTVLDIGWSYHQWYSKLKMS 225
           +SAN   I   +       L M+  ++ T           + ++D+      + S+LKMS
Sbjct: 162 MSANIAEIASVSAQPSPMALTMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMS 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
            +E+K E K+S GNP +K + +   R       + A  +A  ++TNPTHYA+ALRY    
Sbjct: 222 HEEVKQEHKESEGNPQLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDAS 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP ++AKG +L+A K+R+IA  H IP+ E P LAR+L+    ++ AIP   Y AVAQ+
Sbjct: 282 MAAPQVIAKGTDLVALKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQV 341

Query: 346 IYKIYHKK 353
           +  +Y  K
Sbjct: 342 LAYVYRLK 349


>gi|218678319|ref|ZP_03526216.1| flagellar biosynthesis protein FlhB [Rhizobium etli CIAT 894]
          Length = 169

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%)

Query: 12  EAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           EAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF   G+  +T  L  +     Q
Sbjct: 1   EAPTAKKQSDAAEKGNLPSSRELSIFATILATYIYLVFFLPEGVGRMTETLRDIFEQPDQ 60

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131
            K+E    I+ L   L  +++ LV P L++FM+FGI S + Q +P   L  ++P   R+S
Sbjct: 61  WKIETGPDILSLFVRLGWASAALVAPALIMFMVFGIASSVFQNLPTPVLERIRPQASRIS 120

Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
             +G  R++S+  L+ F KS  K+++VG I+   L   YF+ +D
Sbjct: 121 PAKGWGRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSID 164


>gi|299531277|ref|ZP_07044687.1| type III secretion exporter [Comamonas testosteroni S44]
 gi|298720684|gb|EFI61631.1| type III secretion exporter [Comamonas testosteroni S44]
          Length = 393

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 22/248 (8%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           + +   ++P F +++   G+K ++S   L   +K     I++G           F    +
Sbjct: 113 IFSFKPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLG-----------FVAWKY 161

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIAT-----------LTVLDIGWSYHQWYSKLKMS 225
           +SAN   I   +       L M+  ++ T           + ++D+      + S+LKMS
Sbjct: 162 MSANIAEIASVSAQPSPMALAMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMS 221

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
            +E+K E K+S GNP +K + +   R       + A  +A  ++TNPTHYA+ALRY    
Sbjct: 222 HEEVKQEHKESEGNPQLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDAS 281

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             AP ++AKG +L+A K+R+IA  H IP+ E P LAR+L+    ++ AIP   Y AVAQ+
Sbjct: 282 MAAPQVIAKGTDLVALKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQV 341

Query: 346 IYKIYHKK 353
           +  +Y  K
Sbjct: 342 LAYVYRLK 349


>gi|332527145|ref|ZP_08403222.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2]
 gi|332111573|gb|EGJ11555.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2]
          Length = 386

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 16/355 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +DA D +  A S +KI  +  +G    S++    +++ A L  LL  F+P    +T  L 
Sbjct: 3   DDAQDRRLPA-SQRKISKSREDGQVARSQDLGHLATLGAGL-ALLIVFAP---RLTDWLR 57

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH- 122
            +L +  +   + +     +L  LS S   +    L++ +  G    ++     +     
Sbjct: 58  RVLETGLRFDAQAMDRPGTMLERLSASGVDM----LVVVLPLGAVVAVVAAASAVLAGGW 113

Query: 123 ------VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
                 ++P F +++   G+  ++    LVN +K  +  +++G I  + L          
Sbjct: 114 NWTFKPMQPKFSKLNPITGLGNLFKGQQLVNTLKICLLALILGAIGMLYLHAQLAEFTSL 173

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++    + +      ++  ++++LL +    ++D+         +L+MS +E+K E K+S
Sbjct: 174 VAMPLPTAMAETGSLLQGGMVLLLLALTLFALVDVPLQRFMLLRRLRMSFEEVKQEHKES 233

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP +K + K+  R   R KMM A   A +++ NPTH+A+AL+Y +    AP +VAKG 
Sbjct: 234 EGNPEVKGKIKAKMREMARRKMMAAVPSADLVVMNPTHFAVALKYDEATMAAPRVVAKGA 293

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +L+A ++R  A   N+P+ E P LAR+L++   I+  IP   + AVAQ++  +Y 
Sbjct: 294 DLLAFRIRDAAKAANVPVLEAPPLARALYRHAEIDQEIPAALFGAVAQVLAWVYQ 348


>gi|134282484|ref|ZP_01769188.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|134246041|gb|EBA46131.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
          Length = 352

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62
           D KTE P+ KK+ DA  +G   +SR   L      S+ +  L+     F   + ++ +  
Sbjct: 3   DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              +++     L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  
Sbjct: 61  LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P 
Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L   F   R++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G
Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG + 
Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDE 291

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|76819009|ref|YP_335586.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1710b]
 gi|126456589|ref|YP_001075938.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1106a]
 gi|167898600|ref|ZP_02486001.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|217425368|ref|ZP_03456862.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|226199022|ref|ZP_03794584.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|242312446|ref|ZP_04811463.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|254183801|ref|ZP_04890393.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|254186715|ref|ZP_04893231.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264656|ref|ZP_04955521.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
 gi|76583482|gb|ABA52956.1| SctU [Burkholderia pseudomallei 1710b]
 gi|126230357|gb|ABN93770.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106a]
 gi|157934399|gb|EDO90069.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184214334|gb|EDU11377.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|217391619|gb|EEC31647.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|225928797|gb|EEH24822.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|242135685|gb|EES22088.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|254215658|gb|EET05043.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
          Length = 352

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 177/351 (50%), Gaps = 21/351 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62
           D KTE P+ KK+ DA  +G   +SR   L      S+ +  L+     F   + ++ +  
Sbjct: 3   DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              +++     L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  
Sbjct: 61  LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P 
Sbjct: 116 VMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L   F   R++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G
Sbjct: 176 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 231

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG + 
Sbjct: 232 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDE 291

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 292 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|304321150|ref|YP_003854793.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis
           HTCC2503]
 gi|303300052|gb|ADM09651.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis
           HTCC2503]
          Length = 355

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 180/362 (49%), Gaps = 34/362 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN     K+   + ++I+ A  +G+   S E  +F+  L  L+ LL F S    ++ +
Sbjct: 1   MAENQDEAEKSHEATPERIKQARQKGDVAQSPEVLVFARYLGILVALLGFVSALAMNMAT 60

Query: 61  DLHVLLA---SATQRKLEDI-------SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
            L+V +A    A+ R + D        S  +F    ++   + LVI GL+          
Sbjct: 61  SLNVFMARPFEASARLMSDADPLEGFGSSALFFFALMAAPIA-LVIAGLI---------- 109

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI---ILVGTIITISLT 167
             Q+  V   N +KP   +++  +  K+ +    L +F+++ VKI   ++VG +I ++ T
Sbjct: 110 -AQQALVFAPNKIKPDLNKLNPVKNAKQKFGKAALTDFVRNTVKITIVMVVGMVIGLAQT 168

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKM 224
                 +      P  +L      + +++++   IL  IA    L I WS  Q+  +LKM
Sbjct: 169 GRLTASV----GAPPGLLAEELAGLARIMVITGVILAAIAAGIDLPIKWS--QYRERLKM 222

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           S+QE+KDE K + G+P  ++ ++  AR   +++ +     A +++ NP HYA+AL++ + 
Sbjct: 223 SRQELKDETKSTEGDPAQRSERQKRAREIAQNRQLLDVPDADVVVVNPEHYAVALQWNRH 282

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
             + P  +AKG + IA ++R IA E  +P++ +   ARSL+  V +   I    Y+AVA 
Sbjct: 283 RGEVPRCIAKGVDAIALRIRNIADEAGVPLYRDVQTARSLYAVVEVGEEIRYEHYEAVAA 342

Query: 345 LI 346
            I
Sbjct: 343 AI 344


>gi|332162921|ref|YP_004299498.1| flagellar assembly protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667151|gb|ADZ43795.1| Flagellar assembly protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 377

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 168/343 (48%), Gaps = 23/343 (6%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+S K+  A  +G+ P S++ ++ + ++  LI L  F     Y        L    T  +
Sbjct: 12  PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLP--YYKELIGESFLAVGRTAGR 69

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL--------NLNHVK- 124
           ++D + I            +L++  L +F  F +    I  + +L        N   VK 
Sbjct: 70  IDDPTAI-----------EQLLLANLFIFFKFLLTLAPIPLVSILATLVPGGWNFTPVKL 118

Query: 125 -PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P FK++S   GIK+I+S +N    +K   K  +V   + + +  +   +L   +     
Sbjct: 119 IPDFKKLSPLAGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVKNSLPDLLRLQALPLQE 178

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            +   F     +L+  +  I     +DI  S + +  K+KM+KQE+K E K + GNP IK
Sbjct: 179 AITEGFTLYHGILVYFIAIIVIFAAIDIPLSNYLFTKKMKMTKQEVKQEHKSNDGNPEIK 238

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + + R     ++ +    A +IITNPTH+++AL+Y   +  AP ++AKG++ IA  +
Sbjct: 239 ARVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIALYI 298

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           R +A  ++I I E P LAR+++    +N  +P   Y+A+AQ++
Sbjct: 299 RTVAKNNDIEIVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVL 341


>gi|329901844|ref|ZP_08272932.1| Type III secretion inner membrane protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548981|gb|EGF33597.1| Type III secretion inner membrane protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 365

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 169/348 (48%), Gaps = 25/348 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA- 67
            KTE P+ KK+EDA  +G  P+SR+ +  ++    +I LL F +  ++  + D    LA 
Sbjct: 3   EKTEQPTDKKLEDAREKGQVPVSRDMARLATFF--VIGLLAFVTEKLWHASIDSLFELAF 60

Query: 68  -------SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                       ++  ++  + L+   +++ +  V+  +  +  FGI         +L+ 
Sbjct: 61  LRIGAPFVPAMYEMVTVAGKLLLVIFGAIAITGTVVAIMAFWGQFGI---------LLSA 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++  +G+ +++S   LV  + S  K +L+G ++ + + +   T+L      
Sbjct: 112 KALEPKLDKLNPVQGMMQLFSKRKLVELVVSLAKAVLIGYVLYLVILDQLPTILKLSGGT 171

Query: 181 PHSILY---HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           P  + Y      F++ K+ + I       +++D+    H     L MS  EIK E K+S 
Sbjct: 172 PRDVYYGFVEMLFSIFKIAVGICF---AFSLVDLVSQRHFHTKSLMMSMDEIKREYKESE 228

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P++K  +K +A+     +    T  A  ++ NPTH+A+AL Y       P+++AKG++
Sbjct: 229 GDPLVKGTRKQLAQEWANEEPASRTQDANAVVVNPTHFAVALFYDFDAPSVPMVLAKGKD 288

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             A  M   A+++ IP+     LAR+L+     +  IP   Y++VA +
Sbjct: 289 ETAHAMIARAHQYKIPVIRHVWLARTLYATAKPDHPIPKASYESVAHV 336


>gi|226225721|ref|YP_002759827.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27]
 gi|226088912|dbj|BAH37357.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27]
          Length = 366

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 194/371 (52%), Gaps = 36/371 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++   KTE  S K++E+A  +G    S E +  + +L  L+ +  F  P ++    
Sbjct: 1   MAESESGGEKTEEASGKRLEEAREKGQIAKSPEFATAAFLLGFLL-VFSFTGPQLWRFLL 59

Query: 61  D-LHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI--- 115
           D +   LA+A      D  H+   L+  + + + R ++       M G  + +       
Sbjct: 60  DTMGTSLATAG-----DSEHMGAGLIPWMQVISFRTIVA------MLGAVAAMAVVAVAV 108

Query: 116 ------PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                  +L    + P F+R++      RI    ++V   K+ +K+++VG  + +++++ 
Sbjct: 109 QAAQTGGLLTTKTLAPKFERLNPMSNAGRILGKQSIVELAKALLKMMIVGYAVYMTVSDA 168

Query: 170 YFTMLDF-ISANPHSILY----HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS--KL 222
           +  +    ++A+P ++L     + F  ++   +M L+    L + D G  Y +W +   L
Sbjct: 169 WPDLQALALNASPMALLEVVQKYGFALIKNAGMMFLV----LAMADYG--YQRWKTMEDL 222

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           KM+KQE+K+E K   GNP +K R+++IAR RIR +M  A  +A +II NP H A+A++Y 
Sbjct: 223 KMTKQEVKEEHKSQEGNPEVKGRRRAIARERIRRQMFAAVPKADVIIVNPVHIAIAIKYD 282

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
                AP +VA G+  IA++++++A++H +P+ E   LAR+L K   + + IP   Y AV
Sbjct: 283 PNVAPAPYVVALGERKIAQRIKELAFQHGVPVIENKPLARALIKVAKVGTVIPVEMYLAV 342

Query: 343 AQLIYKIYHKK 353
           A+++  +  ++
Sbjct: 343 AEVLAFVMRQR 353


>gi|317407764|gb|EFV87691.1| hypothetical protein HMPREF0005_03212 [Achromobacter xylosoxidans
           C54]
          Length = 357

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 174/342 (50%), Gaps = 11/342 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE PS K++ D+  +G+   S++ +    +LA   Y L   +  I+       ++L  
Sbjct: 8   EKTEPPSQKRLRDSRKKGDVAYSKDFTQTVLVLALFGYTLGN-AGAIFEALG--RIILTP 64

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A    +   + I  +L  L      + +P L + +  GI +  +Q   VL    + PS K
Sbjct: 65  ANFTSIPFGAAINTVLDILLQELIAISLPYLGIVIGIGIFADAMQVGLVLAFQKLLPSAK 124

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++++   +K I+S  NLV F+KS  KI+ +  ++T  + +    ++      PHS L   
Sbjct: 125 KINIMANLKNIFSKKNLVEFLKSTAKIVFLSVLVTQVIKDAMPELMKI----PHSGLVGM 180

Query: 189 FFTVRKVLIMILLFIAT----LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
              +  ++  +++ IA     ++V D+GW   Q+   L MSK+E+K E K+  G+P IK+
Sbjct: 181 GAAMGSMMRTLVVNIAVAYFVISVADLGWQRMQYRKGLMMSKEEVKQEYKEMEGDPHIKH 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            +K + +    +  ++ T +A++++TNPTH A+AL Y + +   PV++AKG+  +A  M 
Sbjct: 241 ARKHLHQEMAMNDTVQNTRKASVVVTNPTHLAIALFYEEDKVPLPVVLAKGEGALAAAMV 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           K A E  IP+ +   LAR+L     ++  IP       A+L+
Sbjct: 301 KAAREEGIPVMQNIPLARALMVHGSVDQYIPAELVVPTAELL 342


>gi|163789632|ref|ZP_02184070.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7]
 gi|159875164|gb|EDP69230.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7]
          Length = 355

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 176/354 (49%), Gaps = 22/354 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL- 66
           D KTE  S KK+ DA  +G  P S +    +S +  ++++L     G Y + + L  L  
Sbjct: 5   DGKTEKASPKKLRDARKKGEIPKSPD---LTSAVTFIVFILSATFLGNYILKNSLLYLQN 61

Query: 67  -------ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG--SYLIQRIPV 117
                      +  L DI     L T        LV+ G  L + F     S ++Q   +
Sbjct: 62  YLTAGFSVDGLENDLADIGMKAILFT--------LVLAGPFLAIAFVAAFISSIVQTGFL 113

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +K    +++   G K ++S   L   +K+  K+ LV  +   +L  + + +++  
Sbjct: 114 FSAEPIKFKLSKINPISGFKNMFSKKTLFTLVKNVAKLTLVFWMAYKTLETSIYLIINSS 173

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           S     I +     V ++   + + +  L ++D  +  +     L+MSKQEIKDE K+S 
Sbjct: 174 SIGTEKIFFLMSDLVMELGTQLGVLLLILGLVDYIYQVYDHRKNLRMSKQEIKDEYKESE 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK++++   R   +  + E  + AT +ITNPTH A+A+RY + +++ P++VAKG +
Sbjct: 234 GDPQIKSQRRQRYRQLTKGALREVET-ATAVITNPTHLAIAIRYEKGKDEVPIIVAKGAD 292

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A K+R+ A   ++PI E   +AR+++K V I   +P   Y+A+A+++  +Y 
Sbjct: 293 HQAAKIRERAKAFDVPIIENKPVARAMYKSVEIGQPVPIDLYQAIAEILALVYQ 346


>gi|146277693|ref|YP_001167852.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555934|gb|ABP70547.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17025]
          Length = 380

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 174/369 (47%), Gaps = 34/369 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           M+E D    KTE P+ K+ + A  +G+   S+E  +F+++   L  L+      P +   
Sbjct: 1   MAEGDDGQEKTEEPTQKRRDQAREDGSIVTSKEVFVFATLAGGLALLVMLQGMLPALVRG 60

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM---------MFGIGS 109
            S   VL   A      D+  ++ L   L      +++ GL++ +          +G+G 
Sbjct: 61  WSGYLVLEPGA------DLDRVMML--RLGQVWREVLLAGLIVSVPLLVVVLLVQYGMGG 112

Query: 110 YLIQRIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
                   +N +    +FK  R++   G+KR+ S+  LV   K+  K+ L+  +  + L 
Sbjct: 113 --------INFSTKAMAFKASRINPGAGLKRMVSMKALVELGKAIAKVSLLIGVAVLVLR 164

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
           +    +    ++ P          + +++  +L+ +A +  LD+ W      + +KMS+Q
Sbjct: 165 DELAPLDRLWTSAPADAAAVMGVGLIRLVSALLIVLALIGGLDLVWQAWSLTNSMKMSRQ 224

Query: 228 EIKDEIKQSYGNPIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           E+K+E K++ G+P +K R + +          R   +E   +AT I+TNPTH+A+ALRY+
Sbjct: 225 ELKEESKEANGSPEVKGRMRRMQMEASQNGAKRRAALENVPQATAIVTNPTHFAVALRYV 284

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
             E  APV++A G+  +A  + +   +  +     P LAR+L+    I   IP   Y AV
Sbjct: 285 PGETTAPVILALGKGPMALDIIERGRKAGVGTLRIPVLARALYFTGDIGQEIPDQLYGAV 344

Query: 343 AQLIYKIYH 351
           A ++  +Y 
Sbjct: 345 AAVLAHVYR 353


>gi|153001439|ref|YP_001367120.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS185]
 gi|304409946|ref|ZP_07391565.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|307302341|ref|ZP_07582099.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
 gi|151366057|gb|ABS09057.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS185]
 gi|304351355|gb|EFM15754.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|306914379|gb|EFN44800.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
          Length = 376

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 174/346 (50%), Gaps = 17/346 (4%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSIL--ACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           P+ +++E A  +G    S+E    + ++  AC  Y+L    P + +  + +   + +  +
Sbjct: 13  PTGRRLEQAREKGQIARSKELGTAAVLISAACGFYML---GPSLATSLTRVFETVFTMDR 69

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH----VKPSF 127
            ++ D      +     + AS +  P   + ++  + ++ I  + +  +N     + P  
Sbjct: 70  AQIFDTEE---MFNVWGVVASEIAWPMAKIMLLIVVVAF-IGNVALGGMNFSTQAMMPKA 125

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN--PHSIL 185
            ++S   G KR++ +  LV   K   K  +V     + L+  YF  +  +S++  P ++ 
Sbjct: 126 SKMSPAAGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLS-FYFNDIMLLSSDHLPGNV- 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           YHA   +  + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K+R
Sbjct: 184 YHALDLLVWMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKSR 243

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + +     + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+
Sbjct: 244 VRQMQHELAQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIRE 303

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA  H+I I   P LAR+++    ++  IP   + AVAQ++  ++ 
Sbjct: 304 IARAHDIAIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQ 349


>gi|160896049|ref|YP_001561631.1| type III secretion exporter [Delftia acidovorans SPH-1]
 gi|160361633|gb|ABX33246.1| type III secretion exporter [Delftia acidovorans SPH-1]
          Length = 391

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 180/355 (50%), Gaps = 13/355 (3%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D+  +K+   + +K++   ++G    SR+ S  + +    + +L    P I       H+
Sbjct: 2   DSSQDKSLPATERKLQKTRSDGQGARSRDLSHLAILGTGALMMLMGAEPLIQ------HL 55

Query: 65  LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI----PVLN 119
            +A A Q   +   +    L+    LS   L +   L+      G+ L+  +     +L+
Sbjct: 56  RMALAQQLAFDAHTAKTPALMMERMLSMGSLGLKISLVVAAVTTGAALVSGMLAGGWILS 115

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           L  ++P F R++   G+  ++S   +V  +K  V   ++ + +      ++   +  IS+
Sbjct: 116 LKPIQPQFNRLNPLSGLTNLFSKQQMVTVVKMVVMTAIL-SFVAWKFLSSHLAEIAAISS 174

Query: 180 NPHSI-LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            P ++ L      +   + ++LL +  + V+D+    + + S+LKMS +E+K E K+S G
Sbjct: 175 QPSAMALSMTGQWLASGVALLLLVVFLMAVIDVPLQAYLFKSRLKMSHEEVKQEHKESDG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP IK++ +   R       + A  RA  ++TNPTHYA+ALRY +    AP +++KG +L
Sbjct: 235 NPQIKSKIRQKQREIADRASVNAVPRADFVVTNPTHYAVALRYDEKTMAAPQVISKGTDL 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++A  H IP+ E P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 295 VALKIREVAGAHKIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349


>gi|323171038|gb|EFZ56687.1| flhB HrpN YscU SpaS family protein [Escherichia coli LT-68]
          Length = 347

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 147/279 (52%), Gaps = 27/279 (9%)

Query: 82  FLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
           F+LT L + A+ L+   +PG  LF+                   + P F ++S  +GI R
Sbjct: 59  FILTLLPMPAAALLSSLVPGGWLFLP----------------KKILPDFSKISPLKGIGR 102

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA----FFTVRK 194
           ++S  +L    K  VK ++V  ++ +SL  N+ + L  + A P  +  +     +  V +
Sbjct: 103 LFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLG-LQALPFKLAMNEGLSLYACVMR 161

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
             +++ +F A   ++D+  +   +   LKM+KQE+K+E K   G P +K R + + R   
Sbjct: 162 NFVILFIFFA---LIDVPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLA 218

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
             ++ +   +A ++ITNPTHYA+AL+Y  +   AP +VAKG + IA  +R++A E+ + +
Sbjct: 219 MGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIALYIRQVAAENQVEV 278

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 279 VEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 317


>gi|310823551|ref|YP_003955909.1| type III secretion protein, flhb/hrpn/yscu/spas family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396623|gb|ADO74082.1| Type III secretion protein, FlhB/HrpN/YscU/SpaS family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 339

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 12/339 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS-DLHVLLA 67
           +KTE P++K++ DA  +G  P SR  S  ++ L  ++    +   G+  +     HV+  
Sbjct: 2   SKTEKPTAKRLRDARRKGQLPRSRLLSSSATTLGGVLGFTAWAPEGVERLRQWTAHVMRG 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             T    E    +V  L+  +L  + LV    +   + G+G         LN+ HV P+ 
Sbjct: 62  QGTLEGWEAGGWLVLGLSGPALGGA-LVASLAVSLAVAGVG---------LNMEHVAPNL 111

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R+S   G KR+ S+   V  +K+ +   ++  ++   + E     L  +       L H
Sbjct: 112 ERISPFAGWKRLLSVRAGVEGLKALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVH 171

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  +L+ +   +  L   D   +  + +  L MS++E+K E ++S G+P  K ++K
Sbjct: 172 LLDRLEPLLLRLSGCLLLLGGADYALARARHFKDLCMSREEVKREYQESEGDPRHKAQRK 231

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
           ++ R   +        +A+ ++ NPTH A+ALRY   E +AP LVAK Q   A  +R  A
Sbjct: 232 ALHRQLAQGGSARGVRKASAVVINPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEA 291

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
               IP+  +  LARSL     +   IP   Y+A A ++
Sbjct: 292 QRRGIPVVRDVPLARSLIS-YDVGEQIPEELYQAAAAVL 329


>gi|27904722|ref|NP_777848.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395823|sp|Q89AN6|FLHB_BUCBP RecName: Full=Flagellar biosynthetic protein flhB
 gi|27904119|gb|AAO26953.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 382

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 196/362 (54%), Gaps = 20/362 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG-IYSVTSDL 62
           +D  + KTE+P+S +++ +   G+    RE  L+S ++  +  + F+++   I ++   +
Sbjct: 3   HDESEEKTESPTSYRLKISKETGHNRYYRE--LYSLLILTITLINFWYNQRLILTLLKRI 60

Query: 63  HVLLASATQRKLED---ISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVL 118
             L  +      ++   + H   ++   +L    + + G++ F M+  +   +I      
Sbjct: 61  FYLSFTFNNSIFQNDLFLDHNFLMIFQDNL----ISLLGIIFFPMLIFMFPAMILCCSNF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           N   +K    +++   G K ++SI ++V+  K+ +KI+ V  ++ + +++ YF  + F S
Sbjct: 117 NFKFIKFDINKLNPILGFKNVFSIKSIVDLFKTVLKIVFVSIVVYLFISK-YFLKVCF-S 174

Query: 179 ANPHSILYHAFFTVRKVLIMIL---LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +N  +  Y   ++VR + +  L   +F   + ++D+ W  + +Y  L+M+++E+ DE+K 
Sbjct: 175 SN-FTFDYILNYSVRTIFLCFLTILIFFIPIIIIDLFWEKYNFYRSLRMTRKEVSDELKN 233

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             GNP IK+R + I  S    +M+   S++ +I+ NP HYA+A++Y +T   AP ++AKG
Sbjct: 234 MEGNPRIKSRIRQIMFSISNRRMLSNVSKSDVIVVNPMHYAIAIKYNETNMYAPKILAKG 293

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL---IYKIYHK 352
            + +A K++KI   H+IP     SLA  L+ +  +   IP V Y+AVA++   ++KI H 
Sbjct: 294 IDELAIKIKKIGNNHSIPTLVSHSLAHVLYYRTEVGEYIPSVLYEAVAEVLAWVWKIRHW 353

Query: 353 KI 354
           KI
Sbjct: 354 KI 355


>gi|39545582|gb|AAR26329.1| AscU [Aeromonas hydrophila]
          Length = 352

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 176/338 (52%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E  + ++I+  LI +L   S   Y +     ++L  
Sbjct: 4   EKTELPTPKKLRDARKKGQVVKSKEV-VSTAIILSLIGMLMAMSD--YYLEHLGKLMLIP 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   L     +  +L +L    + L IP L + ++  + S+  Q   +L+   +KP  K
Sbjct: 61  ESHLNLPFTQALNHVLENLMQEMAYLCIPLLGVSVLVVLISHFAQYGFLLSGESIKPDIK 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  EG K+I+SI +L+ F+KS +K+ L+  ++ I++  N   +L         I    
Sbjct: 121 KINPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWITIEGNLQALLQLPGCGMSCIPPVL 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P IK++++ 
Sbjct: 181 GGMLSQLMAVCAMGFVVIAIADYAFEHYQHTKQLKMSKDEVKREYKEMEGSPEIKSKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A ++RKIA 
Sbjct: 241 FHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKIAE 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           E  IP+ +   LAR+L++   IN+ IP    +A A+++
Sbjct: 301 EEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVL 338


>gi|120609156|ref|YP_968834.1| type III secretion system protein HrcU [Acidovorax citrulli
           AAC00-1]
 gi|58700626|gb|AAW81017.1| HrcU [Acidovorax citrulli]
 gi|120587620|gb|ABM31060.1| type III secretion protein, YscU/HrpY family [Acidovorax citrulli
           AAC00-1]
          Length = 352

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++  +  ++L   + +L    P +Y     + V  A 
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPMLYDRVRRI-VTTAL 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               ++     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 61  EQGVRVHSTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGQIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            H+IP+   P LAR+L K +P++  IP   ++AV+
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334


>gi|312602783|ref|YP_004022628.1| type III secretion inner membrane protein SctU [Burkholderia
           rhizoxinica HKI 454]
 gi|306431586|emb|CBK52138.1| type III secretion inner membrane protein SctU [Burkholderia
           rhizoxinica HKI 454]
 gi|312170097|emb|CBW77109.1| type III secretion inner membrane protein SctU [Burkholderia
           rhizoxinica HKI 454]
          Length = 360

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 167/355 (47%), Gaps = 34/355 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D KTE P+ K++ DA  +G    S +   A++  + +A L+     F+    ++   +H 
Sbjct: 3   DEKTEEPTEKRLRDARRDGQVAKSTDLTDAAVMCASIAVLVAAASMFTDAFRAL---IHT 59

Query: 65  LLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L    T R    +    F L   SL+   +++P +    +    +   Q    ++   V
Sbjct: 60  TLDFVTTNRSNTMLVASAFKLGRQSLT---IIVPCVAATALCAFAALFAQVGFQISTKPV 116

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA---- 179
            P+   V+   GIKRI+S+  +V+  KS +K  LV  ++       ++T+   I      
Sbjct: 117 TPNPTAVNPASGIKRIFSLRTVVDMTKSLLKAALVACVM-------WYTIRGLIPLIATS 169

Query: 180 --NPHSILYHAFFTVR-KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              P   L   F+TV  K+     L    +  LD       +  +++MSK EIK E KQ 
Sbjct: 170 LYQPLPELSRLFWTVLLKLFSAAALVFIVIAALDFKLQKFLFTRQMRMSKDEIKREYKQQ 229

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSR-----ATIIITNPTHYALALRYIQTENDAPVL 291
            G+P +K  +K IAR        EA  R     A  +I NPTHYA+A+RY   E   PV+
Sbjct: 230 EGDPQLKGERKRIAR----EWAQEAPPRLRVGLANALIVNPTHYAVAIRYAPEECPLPVV 285

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AKG +  A ++R+ A +  +PI   P +AR+L + V I+  IP   ++AVA ++
Sbjct: 286 IAKGHDESAAELRRYAAQARVPIIGNPPIARALHR-VKIDEPIPEALFEAVAAIL 339


>gi|46398249|gb|AAS91803.1| AscU [Aeromonas hydrophila]
          Length = 352

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 179/341 (52%), Gaps = 9/341 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E  + ++I+  L+ +L   S   Y +     ++L  
Sbjct: 4   EKTEQPTPKKLRDARQKGQVVKSKEV-VSTAIILSLVGMLIAMSD--YYLEHLGKLMLIP 60

Query: 69  ATQRKL---EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           A+   L   E ++H+V    +L    + L IP L + ++  + S++ Q   +L+   +KP
Sbjct: 61  ASHINLPFTEALNHVV---ENLMQEMAYLCIPILAVAVLVVLVSHIAQYGFLLSGESIKP 117

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             K V+  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML         + 
Sbjct: 118 DIKHVNPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWVTIEGNLQAMLQLPGCGMSCVA 177

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P IK++
Sbjct: 178 PVLGGMMGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSK 237

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +      M     R+++I+ NPTH A+ + Y + E   PV+  K  +  A ++RK
Sbjct: 238 RRQFHQELQSSNMRADVKRSSVIVANPTHIAIGILYERGETPLPVVTLKFTDAQALQVRK 297

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           IA E  IP+ +   LAR+L++   IN+ IP    +A A+++
Sbjct: 298 IAEEEGIPVLQRIPLARALYRDAQINNYIPADQIEATAEVL 338


>gi|90577372|ref|ZP_01233183.1| flagellar biosynthetic protein [Vibrio angustum S14]
 gi|90440458|gb|EAS65638.1| flagellar biosynthetic protein [Vibrio angustum S14]
          Length = 375

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 178/365 (48%), Gaps = 40/365 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ A D KTE  + +KI  A  +G  P +++ +  +  +A +++  F+F         
Sbjct: 1   MSQSSAQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVF--FYFQ-------- 49

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL---------------LLFMMF 105
                   A  + L  +  +   ++H  L +  L I  L                L ++ 
Sbjct: 50  ------IDAIWQALNGVFKLNMTISHDGLRSPWLAIEALGTSLAIIIQLLLPLFGLILIT 103

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
            I S L+    +     + P   ++    GIKR++S  +LV  +KS +K+ ++  ++ + 
Sbjct: 104 AIASSLLIGGWLFYPAGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLY 163

Query: 166 LTENYFTMLDF----ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
           L  N   +L      +      IL   F  +  + + +LLF     ++DI +   +   +
Sbjct: 164 LDANLSRLLGMQNLPLKQGVSLILTILFHGILLMGVALLLF----GLIDIPYQKWEHAKE 219

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           LKM+KQE+K+E K + GNP IK R + I +   R K+ +A  +A ++I NPTHYA+A++Y
Sbjct: 220 LKMTKQELKEEFKSNEGNPEIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKY 279

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
             T ++AP +VAKG +  A  ++ IA +H++ I   P L R+++    I  AIP   Y A
Sbjct: 280 DTTLSEAPFVVAKGIDEAAMHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVA 339

Query: 342 VAQLI 346
           VA ++
Sbjct: 340 VAHIL 344


>gi|326319086|ref|YP_004236758.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323375922|gb|ADX48191.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 390

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 187/372 (50%), Gaps = 46/372 (12%)

Query: 5   DAPDNKTEAPSS-KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
           D+     + P++ +K++ A  EG A  SR+ S  + +L       +  +P +        
Sbjct: 2   DSSSQDKQLPATERKLQQAREEGQAARSRDLSHLA-VLGMGAVSTYALAPSLIEHLQRAI 60

Query: 56  -YSVTSDLHVLLASATQ-RKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFG 106
            + ++ +   +LA+ +  ++L+D++ +         +LT ++  AS +           G
Sbjct: 61  AHHLSFNAETVLATGSMLQRLQDMAFVGVAASFAFAVLTTVAAVASAI-----------G 109

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-- 164
            G +L    PV+      P+F R++   G   ++S  ++V  +K    +++ G +  +  
Sbjct: 110 SGGWLFTFKPVM------PNFSRINPLSGFSNLFSKQHMVTVLK---MVLMTGILAAVAW 160

Query: 165 ---SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
              S +     ML  +  +P ++ Y A + +   + ++LL +    ++D+      + S+
Sbjct: 161 SFMSTSIEKIAML-VLQPSPVALRYVAEW-ITGGMALLLLVVFLAALIDVPLQAFFFKSR 218

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
            KMS +E+K E KQS G+P +K RQ+  AR       +   ++A  ++ NPTHYA+ALRY
Sbjct: 219 QKMSHEEVKQEHKQSEGSPEVKGRQRQRAREIANRASLGNVAKADFVVMNPTHYAVALRY 278

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
            +    AP +V+KG +L+A K+R++A +H++P+ + P LAR+L+    +   IP   Y A
Sbjct: 279 DEATMGAPQVVSKGTDLLAFKIRELANQHSVPVLQSPMLARALYANAELEQPIPSQLYAA 338

Query: 342 VAQLIYKIYHKK 353
           VAQ++  +Y  K
Sbjct: 339 VAQILAYVYRLK 350


>gi|171316786|ref|ZP_02905997.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
 gi|171098044|gb|EDT42860.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
          Length = 377

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 174/347 (50%), Gaps = 20/347 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF----FSP---GIYSVTSD 61
            KTE P+ K++ DA  +G    S E S  +  ++C+  LL+F    FS    GI +V   
Sbjct: 20  EKTELPTPKRLRDARKDGQTSKSTEIS-DTIAMSCVAALLWFAGNHFSDMVRGIVAVA-- 76

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L      A Q+ L D S     L ++ + A  +V+P +    +   G    Q   V+ + 
Sbjct: 77  LEFSHPDAEQKAL-DAS-----LYNIGMHAISVVLPCVFAGAIAATGISFAQVGAVIAMK 130

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            + P  + V+   G+KR++S+   +  +K+ VK +LVGT++  +++  +  ++  +   P
Sbjct: 131 PIVPKLENVNPAAGLKRMFSLRTAIELIKTIVKALLVGTVMWFAVSALFPLVVGSLH-QP 189

Query: 182 HSILYHAFFTVRKVLIMI-LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            + L   F+ +   LI I  +    + ++D+      +  ++KMSK +IK E KQ  G+P
Sbjct: 190 LAGLSVMFWELWLKLIAIACIAFLIIGIVDLKLQKVMFIRQMKMSKDDIKREHKQQEGDP 249

Query: 241 IIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           +IK  +  +AR         +A   A +++ NPTHYA+ALRY   E+  P +V KG +  
Sbjct: 250 LIKGERLRLARELATSAPEKKAVGLANVVLVNPTHYAVALRYAPHEHPLPRVVEKGMDAS 309

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A  +R  A E   P+   P +AR+L+K V I   +P   ++ VA ++
Sbjct: 310 AALIRHYAEELGTPVIGNPPVARALYK-VDIGGPVPRELHETVAAIL 355


>gi|323493113|ref|ZP_08098244.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546]
 gi|323312584|gb|EGA65717.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546]
          Length = 375

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 181/348 (52%), Gaps = 6/348 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS--PGIYSV 58
           MSE  + D KTE  S++KI+ A +EG  P ++E   F++ +  +   ++F+S    I++ 
Sbjct: 1   MSEQSSQD-KTEQASAQKIKKARDEGQIPRAKE---FTTAVIFVAVAVYFYSQISAIWNS 56

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +     S  ++ L +   ++  L H      +L++P  ++ ++  + S LI    + 
Sbjct: 57  IAGIFRYNMSLNKQDLANPLQMIEQLGHSLGVVIQLLLPLFVVIIVVAVASSLILGGWMF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              +V P   +++   GIKR++S  + V  +KS  K+ ++  ++   L  +   +L    
Sbjct: 117 RPANVMPKLSKLNPLSGIKRMFSSRSFVELLKSTFKVAVIFALLYAYLNNHLQPLLGMQM 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +    +      +   L+++   +    V+DI +   +   +L+M+KQEIK+E K + G
Sbjct: 177 LSLEQGVVKVMMILFDGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQEIKEEYKNNEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
            P +K R + I +   R K+ +    A ++ITNPTHYA+A++Y   ++DAP +VAKG + 
Sbjct: 237 RPEVKQRIRQIQQQFARRKIEKMVPTADVVITNPTHYAVAVKYDPAQSDAPFVVAKGVDE 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +++IA E+ + I   P L RS++    I  A+P   Y AVA ++
Sbjct: 297 TAMHIQRIARENQVEIVNSPPLTRSIYHTTAIEQAVPSQLYIAVAHIL 344


>gi|56695095|ref|YP_165442.1| flagellar biosynthesis protein FlhB [Ruegeria pomeroyi DSS-3]
 gi|56676832|gb|AAV93498.1| flagellar biosynthetic protein FlhB [Ruegeria pomeroyi DSS-3]
          Length = 362

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 167/357 (46%), Gaps = 21/357 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+  P+ +K++ A  +G    S + S+ ++    L+ L    +  I  + +
Sbjct: 1   MSGQDDDSDKSYEPTPQKLQKAREKGEVAKSADLSVVAAYAGLLLALSALGAASITKLGT 60

Query: 61  DLHVLLASATQRKLEDISHIVFL------LTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            L VL+  A     + +S +VF       +  L  +    ++P  L+     I S + QR
Sbjct: 61  ALTVLIGQA-----DGLSRLVFEGRAVGPVGGLMGTVGASILPWFLVPAAAVILSVVAQR 115

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V+  + + P   R+S+ +  K  +    L  F KSFVK++L    +   +  N   + 
Sbjct: 116 AFVMAPSKLVPKISRISILQNAKNKFGRGGLFEFAKSFVKLLLYSVCLGFFIKLN---LS 172

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG-----WSYHQWYSKLKMSKQEI 229
           D +S+             R  L+M  +F+     L IG     W + +   K  MS++E+
Sbjct: 173 DIVSSAGMEARQSVLLMAR--LLMRFMFLVATVALVIGAIDYLWQHAEHIRKNMMSRKEL 230

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
            DE K + G+P +K +++   +    ++M+     A ++I NPTHYA+AL++ +    AP
Sbjct: 231 MDETKDAEGDPHMKQKRRQKGQEIAMNQMLADVPGADVVIVNPTHYAVALKWSRLPGAAP 290

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           V VAKG + +A  +R+ A E  +PI  +P  AR+L   V I   I    Y+ VA  I
Sbjct: 291 VCVAKGVDEVAAAIRRSAAEAGVPIHSDPPTARALHAGVEIGQEISEEHYRPVAAAI 347


>gi|241763666|ref|ZP_04761716.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN]
 gi|241367141|gb|EER61507.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN]
          Length = 384

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 163/350 (46%), Gaps = 23/350 (6%)

Query: 15  SSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           + +K++ A  +G    SR+ S   +  +  ACL+ L           T  L   +  A  
Sbjct: 12  TERKLQKAREDGQGARSRDLSHLAILGAGAACLLVL-----------TPQLMEHMQRALG 60

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI---GSYLIQRIP----VLNLNHVK 124
           ++L   S  V     +      +V+ GL+   +F +   G+ LI  I     + +   + 
Sbjct: 61  QQLRFDSSTVMAPASMLTRLKDMVMVGLVASAVFAVLTSGAALISAIGAGGWIFSAKPIT 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++   G   ++S   + N  K  V +  + + +      N    +  +   P  +
Sbjct: 121 PQFNRLNPISGAANLFSKQQMANVAK-MVLMTAILSFVAWKFMGNSIDSMAMLVLQPSPL 179

Query: 185 -LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L H    +     ++LL +    V+D+    + + S+LKMS +E+K E K+S GNP  K
Sbjct: 180 ALRHVAQWLTSGASLLLLVVFLAAVIDVPLQAYFFKSRLKMSHEEVKQEHKESDGNPHTK 239

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R       + A  +A  ++ NPTHYA+AL+Y      AP ++A+G +LIA K+
Sbjct: 240 GRIRQRQREMADRASVGAVPKADFVVMNPTHYAVALKYDDKTMSAPQVIARGTDLIAFKI 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R +A  H IP+ + P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 300 RDLAGAHGIPVLQSPMLARALYAHAELDQAIPATLYTAVAQVLAYVYRLK 349


>gi|321472934|gb|EFX83903.1| hypothetical protein DAPPUDRAFT_315303 [Daphnia pulex]
          Length = 217

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 122/203 (60%), Gaps = 1/203 (0%)

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           +V F+K F K++++ TI      +  F    F S  P  I+  A   + ++L+ ++  + 
Sbjct: 1   MVEFLKGFGKLVIILTIAFFIFGKTNFPFQPFGSLAPQVIMPEASRLILQILLSLIAAMG 60

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM-EATS 263
            L  LD G+ + + + +L MS+QE+KDE K    +  + +RQ+ + +   + + + +   
Sbjct: 61  VLAALDYGYQWFRVFRELYMSRQELKDEHKDLEKDASVISRQRQMQKELAQMRSLGDKIP 120

Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
           +AT++ITNPTHYA+ALR+   E  AP ++AKG + +A+++R++A  H +P+ E P LA++
Sbjct: 121 KATVVITNPTHYAVALRWNPREMSAPQVIAKGTDRVAQRIRELAQHHFVPLVENPPLAQA 180

Query: 324 LFKQVPINSAIPPVFYKAVAQLI 346
           L+K V I   I P  Y+AV+++I
Sbjct: 181 LYKSVKIGQEISPEHYRAVSEVI 203


>gi|326315337|ref|YP_004233009.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372173|gb|ADX44442.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 352

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++  +  ++L   + +L    P +Y     + V  A 
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPLLYDRVRRI-VTTAL 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               ++     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 61  EQGVRVHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGKIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            H+IP+   P LAR+L K +P++  IP   ++AV+
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334


>gi|283786649|ref|YP_003366514.1| T3SS structural protein EscU [Citrobacter rodentium ICC168]
 gi|282950103|emb|CBG89738.1| T3SS structural protein EscU [Citrobacter rodentium ICC168]
          Length = 345

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 166/347 (47%), Gaps = 21/347 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D   +G+   S E      ++A +  L+ F    +Y  +  + V  A 
Sbjct: 3   EKTEKPTPKKIRDLKKKGDVTKSEE------VMAAVQSLILFSFFSLYGASFFIEV--AG 54

Query: 69  ATQRKLEDISHIVFLLTHLSLSASR----LVIPGLLLFMMFGIGSYLIQRIP-VLNLNHV 123
                +  ++       H  L A      L +  ++LF+  G  +  + +I  +  +  +
Sbjct: 55  VVNTTINSLNEPFLYSIHEILGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKI 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KPS +++S++  +K I+S+ ++   +KS  K++++  I            ++F   N + 
Sbjct: 115 KPSAQKISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQ 174

Query: 184 IL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L    +  F   + VL   LLF    +V D  +  H+   K+KMSK E+K E K + GN
Sbjct: 175 TLVIIAFFIFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGN 230

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK  ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++   ++  
Sbjct: 231 PEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAK 290

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A ++ K+A  +NIP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 291 ALQIIKLAELYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|148553141|ref|YP_001260723.1| flagellar biosynthesis protein FlhB [Sphingomonas wittichii RW1]
 gi|148498331|gb|ABQ66585.1| type III secretion exporter [Sphingomonas wittichii RW1]
          Length = 379

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 180/362 (49%), Gaps = 24/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D KTEAP+ K+ +DA  +G+   SRE     + L  ++   +    G +++ +
Sbjct: 1   MAEGPEDDEKTEAPTPKRRQDAAEKGDVLQSRE---LGTALVMVVGAGWIAIAGPWAMAA 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +L++A       I +   L   L++ A+  +   LL  +           +  L  
Sbjct: 58  -LKRMLSNALSFDAGAIENFDPLSAALAMVATVALPLLLLFALTLAAAIAAPAMLGSLGF 116

Query: 121 NHVKPSFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
                 FK   L    G+KRI+ +  L+   KS +KI+ +G +        Y+ ++D I+
Sbjct: 117 RWSALGFKANKLNPMAGLKRIFGMQGLIELGKSLLKILALGAV-------GYWLLMDRIA 169

Query: 179 A-------NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           A       +  + L     T    ++++ L +A +   D+     Q   +L+MSKQEIK+
Sbjct: 170 AIVTMGQQDLRTALDSLGSTFVFAVLVMTLALAVVAGADVPMQMFQRGKRLRMSKQEIKE 229

Query: 232 EIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           E KQ+ G+P +K   RQK +A +    +  +A   AT+++TNPTH+A+ALRY    + AP
Sbjct: 230 ESKQTEGSPELKAAIRQKQMAAAMGSAR--KAVVEATVVLTNPTHFAVALRYRPGFDTAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V++A+G+   A+ +R++A E+++P+   P L R+++        I    + AVA ++  +
Sbjct: 288 VVLARGRGATAQAIRELATENSVPMLHYPQLTRAIYYTSRSGQVIREDLFIAVAAILAFV 347

Query: 350 YH 351
           ++
Sbjct: 348 FN 349


>gi|114762169|ref|ZP_01441637.1| flagellar biosynthetic protein FlhB [Pelagibaca bermudensis
           HTCC2601]
 gi|114545193|gb|EAU48196.1| flagellar biosynthetic protein FlhB [Roseovarius sp. HTCC2601]
          Length = 330

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 133/254 (52%), Gaps = 7/254 (2%)

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           L +PG ++       +    R  V   + + P   R+S  E  +  Y    L  F+KSFV
Sbjct: 66  LAVPGAVVLC-----ALFATRGLVFAPSRLAPKASRLSPMENARNKYGRRGLFEFLKSFV 120

Query: 154 KIILVGTIITISLTENYFTMLDFI-SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
           K+ +   ++ + L+  Y  ++  +  A P +        ++ + I  ++ +  +  +D  
Sbjct: 121 KLTVYSVVLGLFLSSRYDLIIGVLRGAAPDAAELMLNLMLQLLGIAAVVAL-CIGAVDYL 179

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272
           W   +   + +MS++E++DE K++ G+P+ K ++++ A+   + +MM    RA ++I NP
Sbjct: 180 WQRAEHLRRNRMSQKELRDEHKEAEGDPMFKQQRRARAQEIAQTQMMADVPRADVVIVNP 239

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           +HYA+AL + +   DAP+ VAKG + IA+++R++A +  +P+  +P  AR+L     I  
Sbjct: 240 SHYAVALSWSRKPGDAPICVAKGVDEIARRIREVAEDAGVPLHSDPPTARALHATTRIGE 299

Query: 333 AIPPVFYKAVAQLI 346
            I P  Y+ VA  I
Sbjct: 300 QIAPEHYRPVAAAI 313


>gi|330809227|ref|YP_004353689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377335|gb|AEA68685.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 357

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 175/354 (49%), Gaps = 27/354 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            +K+E  +  K+E+A  +G  P  R   L S I+  L+  L  FS   Y + S    ++A
Sbjct: 5   QDKSEEATPYKLEEARKKGQVP--RSPDLLSFIM--LLTFLMVFSAIAYPLAS----VIA 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSAS---RLVIPGLL----LFMMFGIGSYLIQRIPVLNL 120
           + T   L +   +     +L        R V+ GLL      ++  I + L+   PV ++
Sbjct: 57  AHTHWWLGNAGQLGQGFGYLGEQGGYSLRQVVYGLLPLIGALVLMAILTNLLFSGPVFSM 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP FKR+   +G+K+++S    V  +K  VK  L   ++          +L   + +
Sbjct: 117 TALKPDFKRLHPIQGLKKLFSRRMFVELIKVLVKGALFSLVLYYLFQSVLPQLLGMATIS 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTV-----LDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           P  +         K L+M L F     +      DI +S  ++  +++MS++E KDE ++
Sbjct: 177 PLELPQAG-----KQLLMQLGFTVLAVMAAAALFDIWYSRREFGRQMRMSRRETKDEHRR 231

Query: 236 SYGNPIIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
             G+P ++ ++K I ++ ++    +     A +IITNPTHYA+AL+Y  +   AP ++A 
Sbjct: 232 REGDPEVRAKRKGIQQALLKKAAALGQVKDADVIITNPTHYAVALQYRPSSMLAPKVLAM 291

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           G+ L A+++  +A +H +PI   P LAR+L     ++SAIP      VA+ IY+
Sbjct: 292 GRGLHARRICHVARKHQVPILRRPPLARALHALARVDSAIPDSTQADVAR-IYR 344


>gi|154175036|ref|YP_001408825.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus
           525.92]
 gi|112803672|gb|EAU01016.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus
           525.92]
          Length = 139

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 89/127 (70%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSKQE+KDE KQ  G+P +K R + +     + +MM+   +A ++ITNPTHYA+A+RY +
Sbjct: 1   MSKQEVKDEYKQMEGDPQVKGRIRRMQMQAAKRRMMQNVPQADVVITNPTHYAVAVRYDK 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +++ APV++AKG +++A ++RKIA EH + I+E P LAR L++   +   IP   ++AVA
Sbjct: 61  SKDSAPVILAKGVDMMALQIRKIALEHGVQIYENPPLARELYRVCEVEDTIPAELFRAVA 120

Query: 344 QLIYKIY 350
           +++  +Y
Sbjct: 121 EVLSFVY 127


>gi|89111188|dbj|BAE80277.1| HrcU [Acidovorax avenae subsp. avenae]
          Length = 352

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++  +  ++L   + +L    P +Y     + V  A 
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPLLYDRVRRI-VTTAL 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               ++     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 61  EQGVRVHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            H+IP+   P LAR+L K +P++  IP   ++AV+
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334


>gi|15639702|ref|NP_219152.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025940|ref|YP_001933712.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp.
           pallidum SS14]
 gi|6225351|sp|O83710|FLHB_TREPA RecName: Full=Flagellar biosynthetic protein flhB
 gi|3323017|gb|AAC65681.1| flagellar biosynthetic protein (flhB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018515|gb|ACD71133.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
           SS14]
          Length = 376

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 176/352 (50%), Gaps = 21/352 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIY-SVTSD 61
           + ++E P+  K+  A  EG  P S++ +     LF+S        LF  +P I       
Sbjct: 25  EGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTS------LFLLAPFILRECIGV 78

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NL 120
           L      AT   +++       + +      +L +P   + ++ G+ + ++Q   VL ++
Sbjct: 79  LRFFFTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSV 134

Query: 121 NHVKPSFKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
             ++P FK++S   +R   +  +S   L N +KS +KI  +  +   ++  + F  +  +
Sbjct: 135 KSIRPQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLL 194

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +    +++      KVL+ + L +   ++ D  +   Q+   LKMS+QE+K+E+K+  
Sbjct: 195 GVSLTQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQE 254

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P++++  +   +S +R      T  A ++ITNPTH+A+A++Y      AP +VAKG +
Sbjct: 255 GDPLVRSYVRKQMQSLVRESARNTTD-ADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSD 313

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             A +++++A E  I I E   LAR+L+ QV I   +P  ++ A+  +  K+
Sbjct: 314 GTAYRIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYFNALVLIFTKL 365


>gi|54124949|gb|AAV30217.1| AscU [Aeromonas hydrophila]
          Length = 352

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 180/343 (52%), Gaps = 11/343 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P++KK+ DA N+G    S+E  + ++I+  L+ +L   S   Y +     ++L 
Sbjct: 3   GEKTEQPTAKKLRDARNKGQVVKSKEV-VSTAIILSLVGMLMAMSD--YYLEHLGKLMLI 59

Query: 68  SATQRKL---EDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             +   L   + ++H+V  LL  L+     L IP L +  +  + S++ Q   +L+   +
Sbjct: 60  PESHLNLPFSQALNHVVENLLQELAY----LCIPILAVSALVVLVSHIAQYGFLLSGESI 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP  K+++  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML         
Sbjct: 116 KPDIKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIEGNLQAMLQLPGCGMSC 175

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I       + +++ +  +    + + D  + +HQ   +LKMSK E+K E K+  G+P +K
Sbjct: 176 IPPVLGGMLGQLMAVCAMGFVVIAIADYAFEHHQHIKQLKMSKGEVKREYKEMEGSPEVK 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++++   +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A  +
Sbjct: 236 SKRRQFHQELQPSNMRADVKRSSVIVANPTHIAIGIRYGRGETPLPVVTLKFTDAQALLV 295

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            KIA E  IP+ +   LAR+L++   IN+ IP    +A A+++
Sbjct: 296 CKIAEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVL 338


>gi|85710192|ref|ZP_01041257.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
 gi|85688902|gb|EAQ28906.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
          Length = 378

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 173/361 (47%), Gaps = 33/361 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    + + + P+ K+  DA  +G+   S+E +  ++++A   +++    P +     
Sbjct: 1   MSEETNGEKRFD-PTPKRRSDAAKKGDVLRSKEVAT-AAVMAAGTFMILIIGPWLLDSME 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP----GLLLF-------MMFGIGS 109
            +           L D +    +    S  A  ++ P    GL++        M+ G G 
Sbjct: 59  RVARAAFGFDPAGLGDFAPGAMI----SQIAQEILPPIFAIGLVVIAVTVGSQMVLGEGR 114

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
           ++ Q        ++KP   R++   G+KRI+ +  L+   KS +K++L+G+I    ++ +
Sbjct: 115 WVPQ--------NLKPKPSRINPLSGLKRIFGMQGLIELGKSILKLLLLGSIAAWWVSGS 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
              ML        + L  A+  +  ++ M+++ +  + V+D      Q   +LKMS Q++
Sbjct: 167 LDGMLGLGRGTLDAQLNFAWDAMTTLVAMLVVGLLVIAVIDYPLQRLQRDKRLKMSFQDL 226

Query: 230 KDEIKQSYGNPIIK----NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KDE KQS G+P +K     RQ+ ++R  I   M EA      I+ NP H+A+AL Y    
Sbjct: 227 KDENKQSEGSPEMKMARRQRQRDLSRGSIGKAMKEAQ----FIVVNPMHFAVALTYDPNL 282

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             APV++AKG+   A  MR++A E  +P+   P LAR+L+     +  +    Y A+A L
Sbjct: 283 APAPVVLAKGRGETAMAMRELASEMELPVLHYPQLARALYFTTRADQMVREELYVAIAAL 342

Query: 346 I 346
           +
Sbjct: 343 V 343


>gi|257457600|ref|ZP_05622767.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
 gi|257444986|gb|EEV20062.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
          Length = 383

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 180/356 (50%), Gaps = 26/356 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTSDLHV 64
           + +TE P+  KI  A  EG    S++ +    +L     LI+L  FF   +      L  
Sbjct: 29  EGRTEDPTDYKIRKAREEGRVAKSQDINAALVLLFPAGALIFLSSFF---LEECMEILRF 85

Query: 65  LLASATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL----- 118
               +TQ  +   I   +F+   L     +L +P  L+ M+ G+ + ++Q    L     
Sbjct: 86  FFLRSTQSDINSGIWFGIFVQYFL-----KLALPLALIAMLAGVIANILQNNGFLFSTKP 140

Query: 119 ---NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                N + P+F R   R     ++S   L NF KS  K++++  +  + +  N    ++
Sbjct: 141 IQPQFNKIVPNFMRFFKRA----LFSAEGLFNFAKSLTKVVVLVFVSFLMIRANLPHFIE 196

Query: 176 FISAN-PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            +S + P ++ + A    + +    LL +  L + D  +   Q+   LKM+KQEIK+E K
Sbjct: 197 LLSVSFPQAVFFIAGLGAKLLATAALL-LLILAIPDYFFQRKQFIDSLKMTKQEIKEEYK 255

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P +K R +   ++ +    +    +A ++ITNPTH+A+A+++      AP+++AK
Sbjct: 256 ELEGDPQVKGRIRQQMQAILSQNAIRNVPKADVVITNPTHFAIAMQWDSKTMAAPMVLAK 315

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           G + +A++++ IA EHNIP+ E   LAR+L+ +V I   IP  +Y+A++ +  ++Y
Sbjct: 316 GADAMAQRIKAIAREHNIPLIENKPLARALYAKVQIGDIIPEEYYRALSLVFAEVY 371


>gi|89111155|dbj|BAE80245.1| HrcU [Acidovorax avenae subsp. avenae]
          Length = 352

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 3/335 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++  +  ++L   + +L    P +Y     + V  A 
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDL-VAGAVLGAALLVLTGAGPLLYDRVRRI-VTTAL 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               ++     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 61  EQGVRVHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFSKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFVRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            H+IP+   P LAR+L K +P++  IP   ++AV+
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVS 334


>gi|1216382|gb|AAB00549.1| FlhB' [Treponema pallidum]
          Length = 366

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 174/351 (49%), Gaps = 21/351 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREAS-----LFSSILACLIYLLFFFSPGIY-SVTSD 61
           + ++E P+  K+  A  EG  P S++ +     LF+S        LF  +P I       
Sbjct: 25  EGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTS------LFLLAPFILRECIGV 78

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-NL 120
           L      AT   +++       + +      +L +P   + ++ G+ + ++Q   VL ++
Sbjct: 79  LRFFFTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSV 134

Query: 121 NHVKPSFKRVS---LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
             ++P FK++S   +R   +  +S   L N +KS +KI  +  +   ++  + F  +  +
Sbjct: 135 KSIRPQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLL 194

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +    +++      KVL+ + L +   ++ D  +   Q+   LKMS+QE+K+E+K+  
Sbjct: 195 GVSLTQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQE 254

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P++++  +   +S +R      T  A ++ITNPTH+A+A++Y      AP +VAKG +
Sbjct: 255 GDPLVRSYVRKQMQSLVRESARNTTD-ADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSD 313

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
             A +++++A E  I I E   LAR+L+ QV I   +P  ++   +   Y+
Sbjct: 314 GTAYRIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYFNCFSADFYQ 364


>gi|145284335|gb|ABP51916.1| AscU [Aeromonas veronii bv. sobria]
          Length = 352

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 178/344 (51%), Gaps = 15/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP------GIYSVTSDL 62
            KTE P+ KK+ DA  +G    S+E  + ++I+  L+ +L   S       G   +  + 
Sbjct: 4   EKTEQPTPKKLRDARQKGQVVKSKEV-VSTAIILSLVGMLMAMSDYYLEHLGKLMMIPES 62

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           H+ L        + ++H+V    +L    + L IP L + ++  + S+  Q   +L+   
Sbjct: 63  HINLPFT-----QALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGES 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP  K+++  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML        
Sbjct: 115 IKPDIKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMS 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I       + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P I
Sbjct: 175 CITPVLGGMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++   +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A +
Sbjct: 235 KSKRRQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQ 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +RKIA E  IP+ +   LAR+L++   +N+ IP    +A A+++
Sbjct: 295 VRKIAEEEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVL 338


>gi|170737009|ref|YP_001778269.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
 gi|169819197|gb|ACA93779.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
          Length = 379

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 166/357 (46%), Gaps = 25/357 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG------ 54
           MSE    D KTE  + +K+  A  EG    SR+      IL  L  L+   +P       
Sbjct: 1   MSEQQTGD-KTEKATPQKLRKARMEGQVARSRDIGTCVGILVAL-KLIVVLTPAWLVELK 58

Query: 55  -IYSVT-SDLHVLLASATQRKLEDISHIVF---LLTHLSLSASRLVIPGLLLFMMFGIGS 109
            I++++ +DL      +   +L +   ++F   +L    + A    +P  ++      G 
Sbjct: 59  HIFALSFADL------SGDDRLGNAVSMLFPAAVLLMCKMLAPLAAVPAGIIVASLIPGG 112

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
           ++I         ++ P   R++   G+KR+ S  + + F  + +K +++   + I    N
Sbjct: 113 WIISH------KNIMPKLNRLNPLSGLKRLVSGKHYMQFGTTVLKALVLMATLFIVCRSN 166

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
               +    A     L           + +   I    ++DI      +    +MSK++I
Sbjct: 167 LSGFIRLQGAPLADALTGGANLFLSSAVTLSCIITVFALVDIPVQQIIFKRGQRMSKRDI 226

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E+KQS G P +K+R + I R   R  + +    A +++ NPTHYA+AL+Y  T   AP
Sbjct: 227 KEEMKQSEGRPEVKSRIRQIQRQLARQGIRKTVPTADLVVMNPTHYAVALKYDVTRAQAP 286

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +VAKG + +A  +R +A  HN+ + E P LAR+++    +N  IP   Y+AVAQ++
Sbjct: 287 YVVAKGVDEVALFIRDVARGHNVEVLELPPLARAIYHTSQVNQQIPAELYRAVAQVL 343


>gi|15723910|gb|AAL06357.1|AF311901_9 EscU [Citrobacter rodentium]
          Length = 345

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 21/347 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D   +G+   S E      ++A +  L+ F    +Y  +  + V  A 
Sbjct: 3   EKTEKPTPKKIRDLKKKGDVTKSEE------VMAAVQSLILFSFFSLYGASFFIEV--AG 54

Query: 69  ATQRKLEDISHIVFLLTHLSLSASR----LVIPGLLLFMMFGIGSYLIQRIP-VLNLNHV 123
                +  ++       H  L A      L +  ++LF+  G  +  + +I  +  +  +
Sbjct: 55  VVNTTINSLNEPFLYSIHEILGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKI 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KPS +++S++  +K I+S+ ++   +KS  K++++  I            ++F   N + 
Sbjct: 115 KPSAQKISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQ 174

Query: 184 IL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L    +  F   + VL   LLF    +V D  +  H+   K+KMSK E++ E K + GN
Sbjct: 175 TLVIIAFFIFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVEREAKDTDGN 230

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK  ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++   ++  
Sbjct: 231 PEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAK 290

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A ++ K+A  +NIP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 291 ALQIIKLAELYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|325917015|ref|ZP_08179254.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536766|gb|EGD08523.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 357

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 165/359 (45%), Gaps = 49/359 (13%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFF 50
           D KTE P+ KK++DA  +G  PIS +                  S F   +  L+ + F 
Sbjct: 3   DEKTEKPTEKKLQDARRDGEIPISPDVTAAAVLLAALLVMKLAGSYFVEHMNALVSIGFD 62

Query: 51  FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
           F+    + T D     A+A  R L            + +  + L +P ++  +  G+   
Sbjct: 63  FT----ANTRD-----ATALNRAL----------ARIGIQGALLTLPFVVACLAAGLIGT 103

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
            +Q     +L  V P F  ++   G+++++S+ +L+N +K  +K  ++G ++   L    
Sbjct: 104 FLQTGLNASLKPVTPKFDSLNPVNGVQKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALM 163

Query: 171 FTMLDFISANP----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKM 224
            T++  ++  P      I + A   +  + +++ + +         WS   W      +M
Sbjct: 164 PTIIG-LAYQPVPDIAQIGWRALGILSALAVLVFVLVGAAD-----WSIQHWLFIRDKRM 217

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           SK E K E K+S G+P +K ++K  A+  +     E  ++A +++ NPTHYA+AL Y   
Sbjct: 218 SKDEQKREHKESEGDPEVKGKRKEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPD 277

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
               P +VAKG +  A ++R  A+   IPI   P LAR+L   V +  A+P   ++ VA
Sbjct: 278 GFGLPQVVAKGVDDGALELRAYAHNQGIPIVANPPLARALH-LVELGEAVPESLFETVA 335


>gi|146278644|ref|YP_001168803.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556885|gb|ABP71498.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17025]
          Length = 359

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 175/348 (50%), Gaps = 6/348 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D  ++K   PS +K+E+A  +G  P S++    +S    L+  L      I  +  
Sbjct: 1   MSEGD--EDKPHEPSQRKLEEARRKGELPKSQDLVTAASYGGLLLAALGLGQGAIQRMGD 58

Query: 61  DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
               LL  A +    L D +     +  L +S    V+P   +  +  + + + QR  V+
Sbjct: 59  MGTSLLGQADRFSTLLSDKAQP--QVGGLLVSVLLTVLPFFAIPALAAVAALVAQRALVV 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               + P  +R+S   G +  +  N L  F KS VK++LV  +  + +T +   MLD ++
Sbjct: 117 APTKLAPKTERISPVSGFRNRFGRNGLFEFAKSLVKLLLVAVVFALFITFHMAGMLDMLA 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             P   +   F  + + L +++L    + ++D  W   +   + +MS++E+ DE K + G
Sbjct: 177 MAPGLAVGRMFMLMLEFLAIVVLLSGGIGLIDYFWQRAEHLRRHRMSRKELTDEAKDAEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K +++  A     ++M++    A +++ NPTHYA+ALR+ + +  AP+ VAKG + 
Sbjct: 237 DPHVKAQRRQKAMEIATNRMLQDVVGADVVVVNPTHYAVALRWKRGDRRAPLCVAKGTDE 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           IA ++R+ A E  +PI  +P  AR+L   V +   I P  YKAVA  I
Sbjct: 297 IAARIRERAAEAGVPIHRDPPTARALHAAVRVGEEIRPEHYKAVAAAI 344


>gi|260778657|ref|ZP_05887549.1| type III secretion inner membrane protein HrpY [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604821|gb|EEX31116.1| type III secretion inner membrane protein HrpY [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 350

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 169/349 (48%), Gaps = 25/349 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIY-----SVTS 60
            KTE P+ K++ DA  +G    S E      +   L Y +         I+     ++TS
Sbjct: 3   EKTEKPTQKRLRDARKKGQVIKSNEIVTGFQMAVILGYFIIEGQGMMEAIWKMIDLAITS 62

Query: 61  -DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVL 118
            DL + +A+ T      ++  V++L           I GL+  ++  +  S ++Q  PV 
Sbjct: 63  IDLPLKVAAETV-----VAAFVYILIRF--------IAGLVFILVITVAFSCMVQTGPVW 109

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               +KPSF +V++    K I+S+ +L    K+ +KI LV +++   L   +  M  ++ 
Sbjct: 110 ASESLKPSFNKVNVINNAKNIFSMKSLFELCKNMLKI-LVLSLVFYYLLHQHVNMFQYLP 168

Query: 179 ANPHSILYHAFFTVRKVLI-MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                      FT+ K L    L+     +V D  + + Q   +LKMSK++ K E K++ 
Sbjct: 169 TCGVDCGVEIIFTLIKWLWGAFLVCYLVFSVGDYAFVHFQTMKQLKMSKEDTKQEYKETE 228

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K +++ + R      ++    ++T+I+ NPTH A+ L Y   E   P+++ K Q 
Sbjct: 229 GNPEVKQKRRELQRETANGSLVSNVKKSTVIVRNPTHIAVCLYYQPGETPLPLVLDKAQE 288

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +A  + ++A +H +P+ E   LAR+L+ QV     IP   ++ VA+L+
Sbjct: 289 HMALHVVEMAEKHEVPLVENIPLARALYHQVEPGQVIPESLFEPVAELL 337


>gi|120613048|ref|YP_972726.1| type III secretion exporter [Acidovorax citrulli AAC00-1]
 gi|120591512|gb|ABM34952.1| type III secretion exporter [Acidovorax citrulli AAC00-1]
          Length = 390

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 185/372 (49%), Gaps = 46/372 (12%)

Query: 5   DAPDNKTEAPSS-KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
           D+     + P++ +K++ A  EG A  SR+ S  + IL      ++  +P +        
Sbjct: 2   DSSSQDKQLPATERKLQKAREEGQAARSRDLSHIA-ILGMGAVSIYALAPSLIEHLQQAI 60

Query: 56  -YSVTSDLHVLLASATQ-RKLEDISHIVF-------LLTHLSLSASRLVIPGLLLFMMFG 106
            + ++ +   + A+ +  ++L+D++ +         LLT ++  AS +           G
Sbjct: 61  AHHLSFNAETVHATGSMLQRLQDMTFVGLAASFAFALLTTVATVASAI-----------G 109

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-- 164
            G ++    PV+      P+F R++   G   ++S   +V  +K    +++ G +  +  
Sbjct: 110 SGGWIFTFKPVM------PNFTRLNPISGFANLFSKQQMVTVLK---MVLMTGILAAVAW 160

Query: 165 ---SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
              S +     ML  +  +P ++ Y A + +   + ++LL +    ++D+      + S+
Sbjct: 161 SFMSTSIEKIAML-VLQPSPVALRYVAEW-ITGGMALLLLVVFLAAIIDVPLQAFFFKSR 218

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
            KMS +E+K E KQS G+P +K RQ+  AR       +    +A  ++ NPTHYA+ALRY
Sbjct: 219 QKMSHEEVKQEHKQSEGSPEVKGRQRQRARDIASRASLANVPKADFVVMNPTHYAVALRY 278

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
            +    AP +V+KG +L+A K+R++A +H++P+ + P LAR+L+    +   IP   Y A
Sbjct: 279 DEATMGAPQVVSKGTDLLAFKIRELANQHSVPVLQSPMLARALYANAELEQPIPAQLYAA 338

Query: 342 VAQLIYKIYHKK 353
           VAQ++  +Y  K
Sbjct: 339 VAQILAYVYRLK 350


>gi|208434682|ref|YP_002266348.1| flagellar biosynthetic protein [Helicobacter pylori G27]
 gi|208432611|gb|ACI27482.1| flagellar biosynthetic protein [Helicobacter pylori G27]
          Length = 335

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 23/232 (9%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S    
Sbjct: 94  IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFLG 142

Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            + + A   ++  L+             L     L  +D+     Q+ + LKM+KQE+KD
Sbjct: 143 ELNHAALLNLQGQLLWFKNKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKD 202

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+
Sbjct: 203 EYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPVV 261

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA
Sbjct: 262 VAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 313


>gi|145301466|ref|YP_001144305.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|38201232|emb|CAD56767.1| ascU protein [Aeromonas salmonicida subsp. salmonicida]
 gi|66947955|emb|CAE83092.1| AscU protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856348|gb|ABO92557.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 352

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 179/344 (52%), Gaps = 15/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSP------GIYSVTSDL 62
            KTE P+ KK+ DA  +G    S+E  + ++I+  L+ +L   S       G   +  + 
Sbjct: 4   EKTEQPTPKKLRDARQKGQVVKSKEV-VSTAIILSLVGMLMAMSDYYLEHLGKLMMIPES 62

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           H+ L        + ++H+V    +L    + L IP L + ++  + S+  Q   +L+   
Sbjct: 63  HINLPFT-----QALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGES 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP  K+++  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML       +
Sbjct: 115 IKPDIKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMN 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I       + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P I
Sbjct: 175 CITPVLGSMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++   +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A +
Sbjct: 235 KSKRRQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQ 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +RKIA +  IP+ +   LAR+L++   +N+ IP    +A A+++
Sbjct: 295 VRKIAEDEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVL 338


>gi|32490783|ref|NP_871037.1| hypothetical protein WGLp034 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165989|dbj|BAC24180.1| flhB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 385

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 177/369 (47%), Gaps = 35/369 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  + K E P+  +++ A ++GN P SRE + FS ++    ++L +F+    ++  
Sbjct: 1   MSNKDELE-KQEDPTPNRLKKARSKGNIPRSRELTSFSILI--FGWILIWFTGN--NLLD 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI----------------PGLLLFMM 104
            + V L      KL    HI ++L ++ L + +                    GLL   +
Sbjct: 56  KIIVELKKNLNFKLYLYEHINYILVNIYLISKKFFFIIFPIIFIIMIITIISSGLLGGWV 115

Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
           F   S        LN++     F R++  + I RI+S N  +   K+  K   +      
Sbjct: 116 FSKKS--------LNID-----FSRLNPYKNISRIFSKNVFIEMAKTLFKFFFMLFSCIF 162

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
            L    F + D    N  + + +    + K + +I+L    +   D  +    +   L+M
Sbjct: 163 YLWHTRFQISDLSDNNYSNAIKNCILIISKCVFVIILSSIPIVFFDSIFQLFTFKKNLRM 222

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           SK+E++DE K++ GNP +K+  +   R     +MM+   ++ +II NPT+YA+ L+Y + 
Sbjct: 223 SKKEVQDENKENEGNPQLKHYIRKKQRHIYNMRMMQNVEKSDVIIVNPTNYAVGLKY-EK 281

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
              APVL+AKG   IA K+++ A E  IPI   P LAR+++K   I   IP   Y++VA+
Sbjct: 282 NMKAPVLLAKGTGNIAIKIKEKAQEKFIPIIAVPPLARAIYKYCNIGEYIPIELYESVAE 341

Query: 345 LIYKIYHKK 353
           ++  +Y+ K
Sbjct: 342 ILTWVYNLK 350


>gi|121596106|ref|YP_988002.1| type III secretion exporter [Acidovorax sp. JS42]
 gi|120608186|gb|ABM43926.1| type III secretion exporter [Acidovorax sp. JS42]
          Length = 390

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 168/355 (47%), Gaps = 33/355 (9%)

Query: 15  SSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS-- 68
           + +K++ A ++G A  SR+ S    L    LA L+   +F      ++   L    A+  
Sbjct: 12  TERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQQLAFNAATVQ 71

Query: 69  ATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    LE +  +  V LL   S +A   +  G  L    G G +      V +   + P 
Sbjct: 72  APGHMLERLQTMAGVGLLASASFAA---LTGGAALLSAVGAGGW------VFSFKPITPQ 122

Query: 127 FKRVSLREGIKRIYSINNLVNFMK--------SFVKIILVGTIITISLTENYFTMLDFIS 178
           F R++   G   ++S   L N  K        SFV    +G  I     E    ++  + 
Sbjct: 123 FNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSI-----EKMAALV--LQ 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +P S+ +   + V     ++LL +    V+D+      + S+LKMS +E+K E K+S G
Sbjct: 176 PSPMSLRHVGDWIVSGT-SLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP +K RQ+  AR       + A  +A  ++ NPTHYA+AL+Y      AP +V+KG +L
Sbjct: 235 NPQLKGRQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDL 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++A  H +P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 295 LAFKIREVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349


>gi|222112261|ref|YP_002554525.1| type III secretion exporter [Acidovorax ebreus TPSY]
 gi|221731705|gb|ACM34525.1| type III secretion exporter [Acidovorax ebreus TPSY]
          Length = 390

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 169/354 (47%), Gaps = 31/354 (8%)

Query: 15  SSKKIEDALNEGNAPISREAS----LFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS-- 68
           + +K++ A ++G A  SR+ S    L    LA L+   +F      ++   L    A+  
Sbjct: 12  TERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQQLAFNAATVQ 71

Query: 69  ATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    LE +  +  V LL   S +A   +  G  L    G G +      V +   + P 
Sbjct: 72  APGHMLERLQTMAGVGLLASASFAA---LTGGAALLSAVGAGGW------VFSFKPITPQ 122

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F R++   G   ++S   L N      K++L+  I++  +  N+  M   I      +L 
Sbjct: 123 FNRLNPLTGFTNLFSKQQLANV----SKMVLMTGILSF-VAWNF--MGQSIEKMAALVLQ 175

Query: 187 HAFFTVRKVLIMIL-------LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            +  ++R V   I+       L +    V+D+      + S+LKMS +E+K E K+S GN
Sbjct: 176 PSPLSLRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGN 235

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K RQ+  AR       + A  +A  ++ NPTHYA+AL+Y      AP +V+KG +L+
Sbjct: 236 PQLKGRQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLL 295

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R++A  H +P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 296 AFKIREVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349


>gi|84514803|ref|ZP_01002166.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53]
 gi|84510962|gb|EAQ07416.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53]
          Length = 383

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 184/370 (49%), Gaps = 39/370 (10%)

Query: 4   NDAPDN--KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF-FSPGIYSVTS 60
           ++A D   KTE P+ K++E A  +G    S+E  + S++   + +LL+F   P +  +  
Sbjct: 3   DEASDGQEKTEEPTQKRLEKAKEDGQVASSKELFVLSTL--SVGFLLYFGLLPFLSGLLL 60

Query: 61  DLHVLLASATQRKLED-------ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
           +   LL  + +  L D        S        +  +   LVI  ++L  M   GS    
Sbjct: 61  EWSALLRFSGEAGLHDEIIRNSSTSFAFIFWKSVIFALPLLVI--IVLTQMAMSGS---- 114

Query: 114 RIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISLTENY 170
               +N +    +FK  R++   G+KR++S+  LV  +K+  K+  L+G  I +  +E  
Sbjct: 115 ----INWSASALAFKGSRINPVNGLKRMFSVKALVEMLKAVGKVASLIGAAIFVFSSE-- 168

Query: 171 FTMLDFISANPHSILYHAFFTVRKV----LIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
              +D +  +  + L+     +  V    +I+ LL +A + + D+ +  +    KLKM+ 
Sbjct: 169 ---VDKLLTSQATHLFGGLSRLGDVFIFLMIVFLLVLAVIAMFDVVYQQYDNNKKLKMTL 225

Query: 227 QEIKDEIKQSYGNPIIKNRQKSI-----ARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           QE+KDE KQ+ G+P +K + + +     +R++ R + ME    AT IITNP H+A+AL+Y
Sbjct: 226 QELKDESKQTEGSPEVKAKIRRLQMTAGSRAKQRREAMEQVPSATAIITNPIHFAVALKY 285

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
                 AP ++A G+   A+++ ++  E  + +F    LAR+LF    I   IPP  Y A
Sbjct: 286 EIGTRGAPTILAMGRGHQAQEIIRLGKEAGVTVFSNELLARALFFAGRIGDEIPPPLYTA 345

Query: 342 VAQLIYKIYH 351
           VA ++  IY 
Sbjct: 346 VAAVLAFIYQ 355


>gi|254461227|ref|ZP_05074643.1| flagellar protein FlhB [Rhodobacterales bacterium HTCC2083]
 gi|206677816|gb|EDZ42303.1| flagellar protein FlhB [Rhodobacteraceae bacterium HTCC2083]
          Length = 383

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 185/379 (48%), Gaps = 52/379 (13%)

Query: 1   MSENDAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSV 58
           M+E  +    KTE P+ K+++ A  +G  P S+E  +F+++ +  LIY+     P + S+
Sbjct: 1   MAEGGSDGQEKTEEPTQKRLDKAKEDGQVPSSKELFVFTTLFIGMLIYVGLV--PVLPSL 58

Query: 59  TSDLHVLLASATQRKLEDI--------------SHIVFLLTHLSLS-ASRLVIPGLLLFM 103
             +  +L + + ++ L D                 +VF L  L +  A++  + GL+   
Sbjct: 59  VQEWGMLFSFSGEKGLTDAIFGNLGASFRFMFWKSVVFALPMLVVVIATQAAMSGLI--- 115

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
                          N ++   +FK  R++   G+KR+ S+  LV  +K+  K+ L+ + 
Sbjct: 116 ---------------NWSNGALAFKASRINPLSGLKRMVSMKALVEMLKAIGKVTLLISA 160

Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKV---LIMILLFI-ATLTVLDIGWSYHQ 217
             +       ++L  +S   H  L      +  V   LI++ LF+   + + D+ + ++Q
Sbjct: 161 SVMVFVSQIESLL--VSNATH--LTGGLSRMNDVFVLLIIVFLFVLGIMAMADVMYQHYQ 216

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI-----ARSRIRHKMMEATSRATIIITNP 272
              +LKM+ QE++DE KQ+ G+P +K + + +     +R++ R   M+A   AT IITNP
Sbjct: 217 HNKQLKMTLQEVRDESKQTEGSPEVKAKIRRMQMTAGSRAKARKAAMDAVPTATAIITNP 276

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH+A+AL+Y      AP ++A G+   A+++     +  + IF    LAR+LF    +  
Sbjct: 277 THFAVALKYEVGTVGAPTILAMGRGHFAQEIISTGRDAGVTIFRNELLARALFFAGQVGE 336

Query: 333 AIPPVFYKAVAQLIYKIYH 351
            IP   + AVA ++  IY 
Sbjct: 337 EIPAPLFSAVAGVLAFIYR 355


>gi|283836566|ref|ZP_06356307.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC
           29220]
 gi|291067495|gb|EFE05604.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC
           29220]
          Length = 347

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 170/342 (49%), Gaps = 11/342 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLHVLLA 67
            KT+AP+SKKI DA  EG   +++ A L + + LA ++  L+ +   I+   SDL +   
Sbjct: 4   EKTQAPTSKKIRDAREEGQ--VAKTAELAAGVQLAVILMYLYLWGDDIWQDLSDLLLF-- 59

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF---GIGSYLIQRIPVLNLNHVK 124
             T  K+ D   I F    +S+    +    + LF +     + +YL Q   + +   + 
Sbjct: 60  --TIDKMNDPLPIAFA-GFISMFGKFVFEDLIFLFAVLFFASMSAYLAQIGFLFSGKAMM 116

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P   ++ + + +K I+S+ +LV  +K+ VK+ ++G++          ++ + +   P   
Sbjct: 117 PKLDKLDVVKNLKNIFSVKSLVELLKNLVKMTIIGSVFYYLFCRYIPSLRNMVYIEPADA 176

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +      +  +   ++L     ++ D  +  ++    L+MS +E+K E K+  G+  +K+
Sbjct: 177 MQVTLKIIFWLWGGLVLCYIVFSLADYAYQRYELMKNLRMSHEEVKQEYKEMEGSAEVKS 236

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            +KS+ +      +     +++ +I NPTH A+ + Y +     PV+ AKG +LIA+ + 
Sbjct: 237 HRKSLHQEIQSGSLANTVKKSSAVIRNPTHLAICIYYDENITPLPVITAKGADLIARYIV 296

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            IA +  +P+ E   LAR L K++     I P F+ A+++++
Sbjct: 297 DIAEKAGVPVIENVPLARGLNKEIKTGDYISPPFFSAISEIL 338


>gi|328958267|ref|YP_004375653.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4]
 gi|328674591|gb|AEB30637.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4]
          Length = 355

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 178/354 (50%), Gaps = 22/354 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL----H 63
           D KTE  S KK+ D   +G  P S +    +S +  ++++L     G Y +   L    +
Sbjct: 5   DGKTEKASPKKLRDTRKKGEIPKSPD---LTSAVTFIVFILTATFLGNYILKYSLLYLQN 61

Query: 64  VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L A  T   LE+      +  IVF+L         L  P L +       + ++Q   +
Sbjct: 62  YLSAEFTVNGLENNLADIGMKSIVFVLI--------LAGPFLAIAFAAAFIASILQTGFL 113

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +K    +++   G K ++S   L   +K+  K+ LV  +   +L  + + +L+  
Sbjct: 114 FSAEPIKFKLSKINPISGFKNMFSKKTLFTMIKNVAKLTLVFWMAYKTLETSAYLILNSS 173

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +     + +     V ++   + + +  L ++D  +  + +   LKMSKQE+KDE K+S 
Sbjct: 174 NVGTEKLFFLMSDLVLELGTQLGVLLLILGLVDYIYQVYDYRKNLKMSKQELKDEFKESE 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK++++   R   +  + +  + AT IITNPTH A+A+RY + +++ P++VAKG +
Sbjct: 234 GDPQIKSQRRQRYRQLTKGALQDVET-ATAIITNPTHLAIAIRYEKGKDEVPIIVAKGAD 292

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A K+R+ A   ++PI E   +AR+++K V I   +P   Y+A+A+++  +Y 
Sbjct: 293 YQAAKIRERAKAFDVPIIENKPVARAMYKTVEIGQPVPVDLYQAIAEILALVYQ 346


>gi|14719875|gb|AAK73239.1| SctU [Burkholderia pseudomallei]
          Length = 351

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 176/351 (50%), Gaps = 22/351 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASL-----FSSILACLIYLLFFFSPGIYSVTSDL 62
           D KTE P+ KK+ DA  +G   +SR   L      S+ +  L+     F   + ++ +  
Sbjct: 3   DEKTEEPTDKKLRDARRDGE--VSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA 60

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
              +++     L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  
Sbjct: 61  LAFVSA--DHSLVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V P+   ++  EG+K ++S  + +  +K  VK ++V  +   ++   +  +   +  +P 
Sbjct: 116 VMPNLGALNPAEGLK-LFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPP 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L   F   R++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G
Sbjct: 175 E-LSRIF---REILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEG 230

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG + 
Sbjct: 231 DPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDE 290

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 291 AAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 340


>gi|224825749|ref|ZP_03698853.1| type III secretion exporter [Lutiella nitroferrum 2002]
 gi|224601973|gb|EEG08152.1| type III secretion exporter [Lutiella nitroferrum 2002]
          Length = 380

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 171/367 (46%), Gaps = 31/367 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D KTE  +  K+  A  +G    SR+ +    +L  L  L F   PG      
Sbjct: 1   MAETRGGD-KTEKATPHKLRQARQQGQVARSRDMASAIGLLVAL-KLAFLSMPGWLDDFR 58

Query: 61  DLHVLLAS--ATQRKLEDISHIVF-----LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
            L  L  +  + Q  L +   ++F     LL  + L  +  VIP L+  +    G +   
Sbjct: 59  RLFALSFATLSGQGALGNTWSMLFSGTLTLLVKMILPLA--VIPLLVATVSLFPGGW--- 113

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENY 170
              V    H +P   R++      RI S  +  +  KS VK +++G +   ++    +++
Sbjct: 114 ---VFASRHFQPRLDRLNPLAHFGRIASPQHASDIAKSIVKALVLGAVLYHVSRGAAQDF 170

Query: 171 FTM----LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
           F +    LD   +   S+L  A   +  V I   L       +D+      +  + +MSK
Sbjct: 171 FALQGVPLDEALSRAASLLMDALLALTAVFIAFAL-------IDLPLQTLLFLRQQRMSK 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QEIKDE K + G P IK R + +     +  + ++   A ++I NP+HYA+AL+Y +   
Sbjct: 224 QEIKDEYKTTEGRPEIKQRVRQLQLQMAQRGVRKSVPTADVVIVNPSHYAVALKYDEDRA 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP ++AKG + +A  +R++A EH + +   P LAR+++    +N  IP   Y+AVAQ++
Sbjct: 284 EAPFIIAKGIDEMALYIRQVAAEHAVEVLPIPPLARAVYHTTQVNQQIPAPLYRAVAQVL 343

Query: 347 YKIYHKK 353
             +   K
Sbjct: 344 TYVLQLK 350


>gi|254475662|ref|ZP_05089048.1| type III secretion exporter [Ruegeria sp. R11]
 gi|214029905|gb|EEB70740.1| type III secretion exporter [Ruegeria sp. R11]
          Length = 360

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 171/363 (47%), Gaps = 34/363 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  D   E P+ +KI  A  +G+ P S + S+ ++ L  +I +   ++ G   +  
Sbjct: 1   MSQDDDSDKSYE-PTPEKIRKAREKGDVPKSTDLSVAAAYLGLIIVV---YTSG-EDMVR 55

Query: 61  DLHVLLAS---ATQRKLE------DISHIVFLLTHL-SLSASRLVIPGLLLFMMFGIGSY 110
           D+  L+ S      R  E          +  LL  + S  A   +IP   + +     S 
Sbjct: 56  DMGSLMMSFLDQPDRHAELFFSDNGTPPVGGLLKSVASAMAPMFIIPAAAVIL-----SL 110

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           + QR  V   + ++P   R+S+    K  + +  L  F KS VK+IL    + I L    
Sbjct: 111 VGQRALVFAPSKLEPKLSRISIMSNAKNKFGMTGLFEFAKSTVKLILFSVCMGIYLN--- 167

Query: 171 FTMLDFISANPHSILYHAFFTVR-------KVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
           + + D I+    S    AF  V        + +++ L+    + V+D  +    +  K  
Sbjct: 168 YRLPDMIA----SAATGAFVVVTMLGQLAIEFMVLALIIALAVGVVDAAFQQADFTRKNM 223

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MS++EI DE+K S G+P +K  ++  A+       ++  + A ++I NPTHYA+AL++ +
Sbjct: 224 MSRKEIMDEMKNSEGDPHMKGARRQKAQQIAMSAGVQDVATADVVIVNPTHYAVALKWDR 283

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
               APV V+KG + +A  +R++A E+ +PI  +P  AR+L   V I   I    Y  VA
Sbjct: 284 QPGQAPVCVSKGVDEVAAIIREVANENGVPIHSDPPTARALHAAVEIGDEIHEEHYAPVA 343

Query: 344 QLI 346
             I
Sbjct: 344 AAI 346


>gi|116328495|ref|YP_798215.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331225|ref|YP_800943.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121239|gb|ABJ79282.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124914|gb|ABJ76185.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 510

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 180/356 (50%), Gaps = 28/356 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILAC--LIYLL--FFFSPGIYSVTSDLH 63
           + +TE  S ++  +   +GN P S E      +LA   LIYL+  +FF    Y +   +H
Sbjct: 162 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILIYLMGEYFFMRTFYILRKYIH 221

Query: 64  VLLASATQRKLEDISH--IVFLLTHLSLSASRLVIP-------GLLLFMMFGIGSYLIQR 114
                  QR   DIS   +  LL + S     L+ P       G ++  +  +G     R
Sbjct: 222 ----GVGQRT--DISSESVTELLKNASTDLFTLLWPLLGITFVGAVIGNVAQVGFIFTPR 275

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
               N + ++P+FK+V        + +   L N  KS  K+ L+  +  I +++++F++L
Sbjct: 276 ALSFNFSRIRPNFKKV--------LPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFSIL 327

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                     +     +  K+ +++ + +  ++++D  +  +++   LKM+  E K E K
Sbjct: 328 ISGEMGLEQAVALVMSSSFKIFLVVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAK 387

Query: 235 QSYGNPIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           +S G+  ++ R++ +AR  + + KM+     A ++ITNPTH+A+AL Y    + AP+++A
Sbjct: 388 ESDGDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIA 447

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           KG +  A  + +IA E+ +P  E+   AR L+++V + + +P  FY+A+A ++ ++
Sbjct: 448 KGVDDFALLIIRIARENGVPTVEDRIQARGLYEEVELGAEVPQQFYRAIATILSRL 503


>gi|323143905|ref|ZP_08078567.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei
           YIT 12066]
 gi|322416332|gb|EFY07004.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei
           YIT 12066]
          Length = 348

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 175/344 (50%), Gaps = 14/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSV------TSDL 62
            KTE P+ K++ DA  +G+  I++   + S+  A +I ++FFF     ++      T+D 
Sbjct: 4   EKTEQPTDKRLRDAREQGD--IAKSQEVVSA--ATVIAVVFFFIANADNIFKKLLSTTD- 58

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           +V   S T    E +  I   +   S+    +V+P +   +   + + L Q   +     
Sbjct: 59  YVFSNSITMPYDEALRLIGAAVIDCSIG---IVLPIVAAVLCAALVALLSQTGFLFAPKG 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
             P  + +S  +  K+++S+ NL+ F+K+ +K+ ++   + ++   ++       ++N  
Sbjct: 116 AIPKLENLSPAKWFKQVFSVKNLIEFIKNIIKVTVLSVAVYMAAKNSFREFFKIQNSNIG 175

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S+   +   ++ + I  ++  + L  +D  ++  ++     MS  E+K E K+  G+P I
Sbjct: 176 SVWELSAVLLKDLAIYAIVAFSILAAIDFVYTKFKYTKDHMMSPDEVKQEYKEMEGDPQI 235

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K++++ + +       +  T +A ++ITNPTHYA+A+ Y +     PV++AKGQ  +A++
Sbjct: 236 KSKRRQLHQEMANQSTLANTRKAKVLITNPTHYAVAIDYEEGRTKLPVILAKGQGDLARR 295

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           M  IA E +IPI  +P LAR+LF +      +P      VA+++
Sbjct: 296 MIAIAKEEHIPIMRQPPLARALFAEGSEEQYVPSDLLVQVAEVL 339


>gi|317009219|gb|ADU79799.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7]
          Length = 302

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 23/232 (9%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S    
Sbjct: 61  IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFLG 109

Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            + + A   ++  L+             L     L  +D+     Q+ + LKM+KQE+KD
Sbjct: 110 ELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKD 169

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+
Sbjct: 170 EYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQF-DEEHPVPVV 228

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA
Sbjct: 229 VAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVA 280


>gi|207109438|ref|ZP_03243600.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 157

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 92/135 (68%), Gaps = 1/135 (0%)

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
           +D+     Q+ + LKM+KQE+KDE KQ  GNP IK + + +      +KMM+   +A ++
Sbjct: 2   IDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVV 61

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +TNPTHYA+AL++   E+  PV+VAKG + +A +++ IA EH+I I E  +LAR L+++V
Sbjct: 62  VTNPTHYAVALQF-DEEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYREV 120

Query: 329 PINSAIPPVFYKAVA 343
            +N+AIP   ++AVA
Sbjct: 121 KLNAAIPEELFEAVA 135


>gi|121607921|ref|YP_995728.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2]
 gi|121552561|gb|ABM56710.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2]
          Length = 387

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 23/275 (8%)

Query: 94  LVIPGLL-------------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
           +V+PGL+             L    G G +++   P+      +P F R+    G+  ++
Sbjct: 83  MVLPGLVAGTGFAVLTGVAALVGALGAGGWILSTRPI------QPRFSRLDPVAGLTHLF 136

Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
           S   + N +K  +   ++G +    L  +  T+   +       L      +   L  +L
Sbjct: 137 SRQQMANVLKMVLMTGVLGVVAWQFLAGSMATVAMLVLQPSPRALGLLVDWLGAGLGWLL 196

Query: 201 LFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           L +    ++D+      W+  ++L+MS QE++ E ++S GNP  K R +   R       
Sbjct: 197 LVLLLAALVDV--PMQAWFFKARLRMSHQEVRQEHQESDGNPHTKGRIRQRQRDLAERAS 254

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           + A  RA  ++ NP HYA+ALRY +    AP ++A+G +L+A ++R +A EH +P+ + P
Sbjct: 255 VGAVPRADFVVMNPAHYAVALRYDEKTMGAPQVIARGTDLLAFRIRDLAREHGVPVLQSP 314

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 315 RLARALYAHAALDQAIPAPLYAAVAQVLAHVYRLK 349


>gi|320538195|ref|ZP_08038090.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421]
 gi|320145012|gb|EFW36733.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421]
          Length = 379

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 188/366 (51%), Gaps = 49/366 (13%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREAS----LFSSILA-----------CLIYLLFFFS 52
           + +TE P+  K+  A  EG  P S++ +    +F   LA           C+  L FFF 
Sbjct: 24  EGRTEDPTETKLRKAREEGRVPKSQDMNSALVVFFPALALILLAPHILNSCMEILKFFF- 82

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
             +  + +D+           ++  + IVF +T ++L+A              G+ S LI
Sbjct: 83  --LRCIQADIRS--GEWFFVFIKYFAQIVFPITFIALTA--------------GVLSNLI 124

Query: 113 Q-RIPVLNLNHVKPSFKRVS---LREGIKRIYSINNLVNFMKSFVK---IILVGTIITIS 165
           Q R  + +   ++P F ++S   +R   + ++SI  L N  KS +K   I+ V  +I  S
Sbjct: 125 QNRGFLFSTKPIQPKFDKISPNIVRFFTRALFSIEGLFNLAKSLMKVAAIVFVSYLIIKS 184

Query: 166 LTENYFTMLD--FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
               + +ML   F+ A    + Y A     K+L  + L +    + D  +   Q+   LK
Sbjct: 185 NITVFISMLQVSFVQA----VFYIAGLAA-KILAAVSLLLLLFAIPDYFFQRKQFIDSLK 239

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSK EIK+EIK+  G+P+IK++ +   ++ +R     A + A ++ITNPTHYA+A++Y  
Sbjct: 240 MSKSEIKEEIKEQEGDPLIKSQLRRQMQAIVRESARGAAT-ADVVITNPTHYAVAVKYDL 298

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E  AP+++AKG + +A+++++IA E+NIPI E   LARSL+ QV I   +P  ++ A+ 
Sbjct: 299 GEMPAPIVIAKGSDQLAQRIKEIARENNIPIEENKPLARSLYAQVAIGKEVPYEYFNALV 358

Query: 344 QLIYKI 349
            +  K+
Sbjct: 359 LIFTKL 364


>gi|260858250|ref|YP_003232141.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368]
 gi|17384638|emb|CAC81850.1| EscU protein [Escherichia coli]
 gi|257756899|dbj|BAI28401.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368]
          Length = 345

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 169/343 (49%), Gaps = 13/343 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   +G+   S E       L    +   + +     V   ++  + S
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I+  + ++ L     ++P  L+  +  + + + Q   +  +  +KPS +
Sbjct: 63  LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML-DFISANPHSIL-- 185
           ++S++  +K I+S+ ++   +KS  K++++ T+I   +  +Y     +F   N +  L  
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVII-TLIFYFMGHSYANEFANFTRLNAYQTLVV 178

Query: 186 --YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
             +  F   + VL   LLF    +V D  +  H+   K+KMSK E+K E K + GNP IK
Sbjct: 179 VAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIK 234

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
             ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++
Sbjct: 235 GERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQI 294

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+A  ++IP+ E+ +LARSL+K +     I   F++ VAQLI
Sbjct: 295 IKLAELYDIPVIEDITLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|292493584|ref|YP_003529023.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4]
 gi|291582179|gb|ADE16636.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4]
          Length = 377

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 8/222 (3%)

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
           +G+KR++     +  +K+  K +L+G I  +     ++   D I+     ++  A + + 
Sbjct: 132 KGMKRVFGPQGWMELLKALAKFLLLGGIACVLF---WYLGPDLIALGRQGLI-PALYQLA 187

Query: 194 KVLIMILLFIATLTVL--DIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            ++    L ++   VL   I   +  W+   +LKM+ QEIK+E K++ G+P +K R + +
Sbjct: 188 HLMGWSFLGLSASLVLIAAIDAPFQHWHHTRQLKMTHQEIKEEHKETEGSPELKARVRRV 247

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +MM A  +A +++TNPTHYA+AL Y Q +  AP +VAKG + +A K+R +A  
Sbjct: 248 QREIAGRRMMAAVPQANVVVTNPTHYAVALDYQQDKGGAPRVVAKGADQVALKIRAVAAA 307

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +N+P+   PSL+R+L+    +N  IP   Y AVAQ++  ++ 
Sbjct: 308 NNVPVLSAPSLSRALYYNTELNQEIPAGLYVAVAQVLAYVFQ 349


>gi|317012581|gb|ADU83189.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           Lithuania75]
          Length = 302

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 23/232 (9%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P F +++   G+K ++S+  L++           G++IT+ +   +F      S    
Sbjct: 61  IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLAFFLGFFIFSLFLG 109

Query: 183 SILYHAFFTVRKVLIMI-----------LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            + + A   ++  L+             L     L  +D+     Q+ + LKM+KQE+KD
Sbjct: 110 ELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKD 169

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+
Sbjct: 170 EYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKF-DEEHPVPVV 228

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           VAKG + +A +++ IA EH+I I E  +LAR L+K V +N+ IP   ++AVA
Sbjct: 229 VAKGTDYLAIRIKGIAREHDIEIIENKTLARELYKDVKLNATIPEELFEAVA 280


>gi|218507112|ref|ZP_03504990.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5]
          Length = 218

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 95/166 (57%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F+++LA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATVLATFIYLVFFLPENVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
           +P   R+S  +G  R++S+  L+ F KS   +++VG I+   L  N
Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFNVVVVGVILFFVLRAN 182


>gi|167567199|ref|ZP_02360115.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           EO147]
          Length = 375

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 165/357 (46%), Gaps = 15/357 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D+ D K+E  + +K++ A  +G  P SR+ S    +L  +  LL      +    +
Sbjct: 1   MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +LA  ++         + ++  + + A   VIP  ++      G +      V   
Sbjct: 60  LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASVIAGSLFPGGW------VFAS 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            + KP   R+S    + ++ S  +   F  S  K      II +    +  T+  F+   
Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAF---AIIAVLWHVSASTLPAFLRLQ 170

Query: 181 ----PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
               P +I + A   V   + + L+ +A    +D+ +    +    +M+KQE+KDE K +
Sbjct: 171 ALPLPEAIAHGARLFVDGAMTLALVILA-FASMDVPFQRFVFMRGQRMTKQEVKDEHKNN 229

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P ++ R + + R   +  + +    A ++I NPTHYA+AL+Y     DAP ++AKG 
Sbjct: 230 EGRPEVRGRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGV 289

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A  +R++A  H + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 290 DDMALVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346


>gi|167574623|ref|ZP_02367497.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           C6786]
          Length = 375

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 166/357 (46%), Gaps = 15/357 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D+ D K+E  + +K++ A  +G  P SR+ S    +L  +  LL      +    +
Sbjct: 1   MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +LA  ++         + ++  + + A   VIP  ++      G +      V   
Sbjct: 60  LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASVIAGSLFPGGW------VFAS 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            + KP   R+S    + ++ S  +   F  S  K      II +    +  T+  F+   
Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAF---AIIAVLWHVSASTLPAFLRLQ 170

Query: 181 ----PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
               P +I + A   V   + + L+ +A    +D+ +    +    +M+KQE+KDE K +
Sbjct: 171 ALPLPEAIAHGARLFVDGAMTLALVILA-FASMDVPFQRFVFMRGQRMTKQEVKDEHKNN 229

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G P +++R + + R   +  + +    A ++I NPTHYA+AL+Y     DAP ++AKG 
Sbjct: 230 EGRPEVRSRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGV 289

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A  +R++A  H + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 290 DDMALVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346


>gi|312884592|ref|ZP_07744296.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367904|gb|EFP95452.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 346

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 165/356 (46%), Gaps = 39/356 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P+ K+I+DA  +G    S E  + F   + C  +L+                   
Sbjct: 3   EKTEKPTQKRIKDARKKGQVVKSVEIVTGFQMAIICGYFLV------------------- 43

Query: 68  SATQRKLEDISHIVFLLTH-----LSLSASRLV----------IPGLLLFMMFGIG-SYL 111
              Q  +E I  ++ +  H     L ++AS +V          I GL   ++  +  S L
Sbjct: 44  -EGQGLMEAIWKMIDIAIHSINLPLKVAASSVVGAFVYIMLRFISGLAALLVLTVAFSCL 102

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
           +Q  P+L    +KPSF ++++    K I+S+ ++    K+ +K+ LV +++   L   + 
Sbjct: 103 VQTGPLLATESLKPSFNKINVINNAKNIFSMKSIFELCKNMLKV-LVLSLVFYYLLHQHV 161

Query: 172 TMLDFISANPHSILYHAFFTVRKVL-IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
            M  ++             T+ K L    L+        D  + + Q   +LKMSK++ K
Sbjct: 162 NMFQYLPTCGAECGVEVISTLLKWLWTAFLICYVIFAAADYAFVHFQTMKQLKMSKEDTK 221

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K++ GNP +K +++ + R      +     ++T+++ NPTH A+ L Y   E   P+
Sbjct: 222 QEYKETEGNPEVKQKRRELQRETANGSLATNVKKSTVVVRNPTHIAVCLYYNPDEAPVPI 281

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++ K Q  +A    ++A +H+IP+ E   LAR+L+ QV     IP   ++ VA+L+
Sbjct: 282 VLDKAQEHMALHTVELAEKHSIPLIENIPLARALYHQVEPGQLIPESLFEPVAELL 337


>gi|126738573|ref|ZP_01754278.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6]
 gi|126720372|gb|EBA17078.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6]
          Length = 360

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 173/355 (48%), Gaps = 18/355 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  D   E P+ +K++ A  +G    S + S+ ++ L     +L F++ G   V  
Sbjct: 1   MSQDDDSDKSFE-PTPQKLQKAREKGEVAKSTDLSVAAAYLG---LVLAFYAVGADMVAG 56

Query: 61  DLHVLLASATQ--RKLEDI------SHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYL 111
              VL+    Q  R  + +      + +  LLT ++     L +IP +L+ +     S L
Sbjct: 57  TGTVLMTFFDQPDRLAQQLFYGGGTAPVGGLLTAIATPLIPLFLIPAVLVLL-----SIL 111

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
            Q+  V   + ++P   ++S+    K       L  F KS  K+ +    + + LT    
Sbjct: 112 GQKALVFAPSKLEPKLSKISIISNAKNKLGRAGLFEFGKSAFKLTIYSICLGVYLTHRMP 171

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            M+  +     S++        + L++ LL    + V+D  + + +   K  MS++EI+D
Sbjct: 172 EMIASVGTGAFSVIKLLSELGMEFLVIALLVSLPIGVVDAVFQHAEHRRKNMMSRKEIQD 231

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K S G+P +K +++  A++    +MM A   A++++ NPTHYA+AL++      AP+ 
Sbjct: 232 EQKNSEGDPHMKAKRRQKAQAIALGQMMGAVPDASVVVVNPTHYAVALKWEGGAGTAPIC 291

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           VAKG + +A  +R++A E+ +PI  +P  AR+L+  + I   +    Y  VA  I
Sbjct: 292 VAKGVDEVAAAIRQVANENAVPIHSDPPTARALYATIEIGEEVMEEHYAPVAAAI 346


>gi|119714987|ref|YP_921952.1| type III secretion exporter [Nocardioides sp. JS614]
 gi|119535648|gb|ABL80265.1| type III secretion exporter [Nocardioides sp. JS614]
          Length = 381

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 165/354 (46%), Gaps = 22/354 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             K+E P++K+ ++   EG  P S E   +S++L   ++L   F   I  +      + +
Sbjct: 3   GEKSEKPTAKRNKENRKEGQVPRSPEIGAWSALLLIAMFLPRLFGHEIDKLRELTTTMFS 62

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           SA      D    V LL         +++       + GI   L Q    L    VKP  
Sbjct: 63  SAAD---ADAEIAVQLLGQGLWHVLLVLVVLGAGIAVVGIAGALGQGGFFLATKSVKPKL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA-NPHSILY 186
            +++   G KRI+    L    K  ++  +V  ++ +++     +ML  I    P S++ 
Sbjct: 120 SKLNPLPGFKRIFGPRALWEGTKMLIRSGIVALLVWLAVK----SMLPLIGGLMPMSLVL 175

Query: 187 -----HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
                HA   +R + +  +L  A     D          K +MSK E+K E KQS G+P+
Sbjct: 176 DQFASHALSMIRNIAVAGVLLGAA----DYLVQRKLMGKKTRMSKDEVKQEHKQSEGDPL 231

Query: 242 IKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           +K   R + +A SR  ++MM     A +++ NPTH A+ALRY + E  AP +VA+G  +I
Sbjct: 232 LKGAIRSRQLAASR--NRMMADVPTADVVLVNPTHVAVALRY-EPERGAPRVVARGAGVI 288

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +R+ A E  +P+  +  LAR+L+    +   IP   + AVAQ++  +  ++
Sbjct: 289 AAAIREKATEARVPLVRDVPLARALYTSTTVGQEIPTELFAAVAQVLAFVLSRR 342


>gi|149184191|ref|ZP_01862509.1| type III secretion exporter [Erythrobacter sp. SD-21]
 gi|148831511|gb|EDL49944.1| type III secretion exporter [Erythrobacter sp. SD-21]
          Length = 387

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 171/374 (45%), Gaps = 45/374 (12%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57
           MSE D P  K  AP+ K++ DA  +G+   S++A   + +L    +L     +   G+  
Sbjct: 1   MSE-DTPGEKNFAPTEKRLADAAKKGDVLRSKDAGTAAVMLFGGAWLALAGPWLLEGLTD 59

Query: 58  VTSDLHVLLASATQRKLEDIS-------------HIVFLLTHLSLSASRLVIPGLLLFMM 104
           +  D  +  AS     L D S               VF L      A  +++  L   + 
Sbjct: 60  LARDAFLFDAS----DLRDFSVQGLLIEGLLLGVPAVFAL------AVPVIVVTLFSQLA 109

Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
           FG G ++         +++K   +R++   G+KR++ +  L+   K  +KI L+G+I   
Sbjct: 110 FGRGRWVT--------DNLKAKGQRINPMSGLKRMFGMQGLIEMGKGLLKIALLGSIAAA 161

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV-----LDIGWSYHQWY 219
               +   ++     N  + L  A+   R ++ ++    A L V     L I W   Q  
Sbjct: 162 WWWNSMDVVIGLGRGNLSAQLTAAW---RAIVSLVFALSAGLVVIAFVDLPIQWLRQQ-- 216

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
            +LKMS QE++DE K+S G+P ++  ++   R      +  A   A  +I NPTH+A+AL
Sbjct: 217 KRLKMSHQEMRDENKESEGSPEMRAARRQRQRDIATGSVAGAMREAQFVIANPTHFAVAL 276

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
            Y      AP+L+AKG+   A  M+++A E ++P  E P LARS++        I    Y
Sbjct: 277 TYDPARASAPILLAKGRGDKALAMKELASELDLPTLEMPQLARSVYYTTRERQIICEDLY 336

Query: 340 KAVAQLIYKIYHKK 353
            AVA +I  ++  K
Sbjct: 337 SAVASVIAYVFSLK 350


>gi|193062073|ref|ZP_03043169.1| EscU [Escherichia coli E22]
 gi|194426490|ref|ZP_03059045.1| EscU [Escherichia coli B171]
 gi|260845709|ref|YP_003223487.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009]
 gi|13447704|gb|AAK26703.1|AF200363_11 EscU [Escherichia coli]
 gi|18034508|gb|AAL57530.1|AF453441_14 EscU [Escherichia coli]
 gi|57434469|emb|CAI43886.1| EscU protein [Escherichia coli]
 gi|192932293|gb|EDV84891.1| EscU [Escherichia coli E22]
 gi|194415798|gb|EDX32065.1| EscU [Escherichia coli B171]
 gi|195183210|dbj|BAG66755.1| T3SS structure protein EscU [Escherichia coli O111:H-]
 gi|254692328|emb|CAR47969.1| EscU protein [Escherichia coli]
 gi|254692396|emb|CAR48039.1| EscU protein [Escherichia coli]
 gi|257760856|dbj|BAI32353.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009]
 gi|323163021|gb|EFZ48854.1| hypothetical protein ECE128010_0617 [Escherichia coli E128010]
          Length = 345

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 168/343 (48%), Gaps = 13/343 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   +G+   S E       L    +   + +     V   ++  + S
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I+  + ++ L     ++P  L+  +  + + + Q   +  +  +KPS +
Sbjct: 63  LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML-DFISANPHSIL-- 185
           ++S++  +K I+S+ ++   +KS  K++++ T+I   +  +Y     +F   N +  L  
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVII-TLIFYFMGHSYANEFANFTRLNAYQTLVV 178

Query: 186 --YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
             +  F   + VL   LLF    +V D  +  H+   K+KMSK E+K E K + GNP IK
Sbjct: 179 VAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIK 234

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
             ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++
Sbjct: 235 GERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQI 294

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+A  ++IP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 295 IKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|319795601|ref|YP_004157241.1| type III secretion exporter [Variovorax paradoxus EPS]
 gi|315598064|gb|ADU39130.1| type III secretion exporter [Variovorax paradoxus EPS]
          Length = 346

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 167/343 (48%), Gaps = 14/343 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            K +AP+ K++ +A   G    S + +    F+++L C ++L      G +S+ S L  L
Sbjct: 3   EKDQAPTRKRLREARRRGEVAFSADVASTVGFAAVL-CAVWL------GGHSIYSLLREL 55

Query: 66  LASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
              AT   L       F  L+ H   +     +P + +  + GI   L Q   +     +
Sbjct: 56  WLHATSTSLLSRPDDRFGELVLHTGEALLWGTVPIMGIAALAGIVGSLFQVGGMAAWGRL 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P   R++  EG KRI+S  + +N +K  +K +L+G ++ + +     T L    A P  
Sbjct: 116 VPDMNRMNPAEGFKRIFSTRSAINLLKMVLKTVLLGALMFLVVRGYLDTALKLGYATPAG 175

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      V +     LL  A +  +D    +H++  + +MS ++I+ E K+S G+P+ +
Sbjct: 176 ILAAGARMVLQAFGWALLVYALMAAIDYAHEHHEFIKQQRMSFEDIRQEHKESDGDPLTQ 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R++S     +   + +    A+ +I +    A+AL+Y+  E D P ++A+G+  +  ++
Sbjct: 236 ARRRSAHFEAVYASLADRVRAASAVICS-ARVAVALQYL-GERDLPRVIARGEGEVGAQI 293

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           R+ A E  IP   EPSLA  L++ VP + AIP   Y  VA+L+
Sbjct: 294 RRFASEGLIPTEFEPSLAERLYEDVPQDQAIPRSLYAPVARLL 336


>gi|163742549|ref|ZP_02149935.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           2.10]
 gi|161384134|gb|EDQ08517.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           2.10]
          Length = 359

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 171/354 (48%), Gaps = 17/354 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+  +K+  P+ +K+E A  +G  P S + ++ +S L  +I +    +     V  
Sbjct: 1   MSDDDS--DKSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIIAIYVSGA----DVVE 54

Query: 61  DLHVLLASATQR--KLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           +L  +L S   +  +L D+         +  + ++     +P  ++ M   + S + QR 
Sbjct: 55  ELGTILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRA 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V   + ++P   ++S+    K  +  + L  F KS VK++L    + + L    + + D
Sbjct: 115 LVFAPSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGVYLN---YRLPD 171

Query: 176 FISANPHSILYHAFFTVR---KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            I+++            +   + LI+ L+    + V+D  +   +   K  MS+QEI DE
Sbjct: 172 MIASSATGAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDE 231

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K++ G+P +K  ++  A      + +   + A ++I NPTHYA+AL++ +    APV V
Sbjct: 232 SKEAEGDPHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPVCV 291

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AKG + +A  +R++A E+ +PI  +P  AR+L   V I   I    Y  VA  I
Sbjct: 292 AKGVDEVAAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAI 345


>gi|149179491|ref|ZP_01858040.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797]
 gi|148841678|gb|EDL56092.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797]
          Length = 323

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISANPHS 183
           ++R++  EG KRI SI  LV    S  KI L   ++ I++  +Y      L  + A P +
Sbjct: 89  WERLNPIEGAKRIISIRGLVKLGVSLGKISL---LVLIAVWFSYLVFPGFLGLMGAPPET 145

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDEIKQSYGNPI 241
           IL   F +  ++ +++ L +  L  LD  +++ +W     L MSKQEI++E+K   G+P+
Sbjct: 146 ILRDIFNSTIELGLLLALALIILGGLD--YAFQKWKHEKDLMMSKQEIREEMKSMDGDPL 203

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           I+ R++   R     + +     A ++ITNPTH ++A++Y      APV+VAKG   IA 
Sbjct: 204 IRQRRREAHRKLAMSQELSKVESADVVITNPTHISIAIKYDPESMPAPVVVAKGAGEIAF 263

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++RKIA EH IPI E  +LAR +++ V     IP   Y+   +++  +Y
Sbjct: 264 QIRKIANEHGIPIIERKALARQMYRDVKTGQEIPFELYEVFVEIMAYVY 312


>gi|171323057|ref|ZP_02911702.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
 gi|171091551|gb|EDT37164.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
          Length = 216

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 22/219 (10%)

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA----------FFT 191
           +  +++  ++ VK+   G   T++    Y  + D + A  H+ L  A          F  
Sbjct: 1   MQTVLDAARACVKL---GVYCTLA----YRCIADAVRAASHAGLTAAGLARTLGSASFAL 53

Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
             ++LI   LF    TV D      ++  +++MS+ E+K E KQ  G+P IK R++ + R
Sbjct: 54  ATQLLIAAALF----TVFDYALVRRRFAKQMRMSRHEVKQEFKQHDGDPRIKQRRRQLQR 109

Query: 252 SRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
             + R + +     A +++TNPTHYA+ LRY   E  AP +V+KG    A ++RK+A+ H
Sbjct: 110 GLLQRSRSLRGMRGADVLVTNPTHYAIGLRYTPAEMAAPTIVSKGAGEFALRLRKLAFIH 169

Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            + I E P+LAR LF+   +++ IPP  + A A +  ++
Sbjct: 170 RVQIVEAPALARQLFRHGALDTEIPPQLFVATAAIYLRV 208


>gi|215488991|ref|YP_002331422.1| secretion system apparatus protein SsaU [Escherichia coli O127:H6
           str. E2348/69]
 gi|260869698|ref|YP_003236100.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128]
 gi|312967936|ref|ZP_07782148.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|2865279|gb|AAC38372.1| EscU [Escherichia coli]
 gi|54311603|emb|CAG17518.1| EscU protein [Escherichia coli]
 gi|215267063|emb|CAS11508.1| T3SS structure protein EscU [Escherichia coli O127:H6 str.
           E2348/69]
 gi|221361437|emb|CAX18590.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361494|emb|CAX18665.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361555|emb|CAX18745.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|257766054|dbj|BAI37549.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128]
 gi|312287497|gb|EFR15405.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|323178898|gb|EFZ64474.1| hypothetical protein ECOK1180_2632 [Escherichia coli 1180]
          Length = 345

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 172/350 (49%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACL--IYLLFFFSP--GIYSVTSD- 61
            KTE P+ KK+ D   +G+   S E  A++ S IL     +Y + FF    G+ + T D 
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-VLNL 120
           L+     A +  L  + +I FLL  L +S          L +  G  +  + +I  +  +
Sbjct: 63  LNRPFLYAIREILGAVLNI-FLLYILPIS----------LIVFVGTVTTGVSQIGFIFAV 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KPS +++S++  +K I+S+ ++   +KS  K++++  I             +F   N
Sbjct: 112 EKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLN 171

Query: 181 PHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            +  L    +  F   + VL   LLF    +V D  +  H+   K+KMSK E+K E K +
Sbjct: 172 AYQALVVVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDT 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP IK  ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++  G+
Sbjct: 228 DGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGK 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 288 DAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|163738055|ref|ZP_02145471.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           BS107]
 gi|161388671|gb|EDQ13024.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           BS107]
          Length = 359

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 171/354 (48%), Gaps = 17/354 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+  +K+  P+ +K+E A  +G  P S + ++ +S L  ++ +    +     V  
Sbjct: 1   MSDDDS--DKSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIVAIYVSGA----DVVE 54

Query: 61  DLHVLLASATQR--KLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
           +L  +L S   +  +L D+         +  + ++     +P  ++ M   + S + QR 
Sbjct: 55  ELGTILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRA 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V   + ++P   ++S+    K  +  + L  F KS VK++L    + I L    + + D
Sbjct: 115 LVFAPSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGIYLN---YRLPD 171

Query: 176 FISANPHSILYHAFFTVR---KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            I+++            +   + LI+ L+    + V+D  +   +   K  MS+QEI DE
Sbjct: 172 MIASSATGAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDE 231

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K++ G+P +K  ++  A      + +   + A ++I NPTHYA+AL++ +    AP+ V
Sbjct: 232 SKEAEGDPHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPICV 291

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AKG + +A  +R++A E+ +PI  +P  AR+L   V I   I    Y  VA  I
Sbjct: 292 AKGVDEVAAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAI 345


>gi|108764098|ref|YP_633783.1| FlhB/HrpN/YscU/SpaS family type III secretion protein [Myxococcus
           xanthus DK 1622]
 gi|108467978|gb|ABF93163.1| type III secretion protein, FlhB/HrpN/YscU/SpaS family [Myxococcus
           xanthus DK 1622]
          Length = 349

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 155/342 (45%), Gaps = 24/342 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE PS+K++ +A  +G  P SR           L+      + G++ +T+   V +A 
Sbjct: 4   EKTEKPSAKRLREARRKGQIPRSR-----------LLNASAVTAGGLFGLTAAAPVGMA- 51

Query: 69  ATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFG--IGSYLIQRIPVL----NLN 121
               +L+  +  +FL    L      L I       + G    + L+  +  +    +L 
Sbjct: 52  ----RLQAWTEHLFLGQQDLGAWQEGLWIAARFCGPVLGGAFAAALLVSVATVGLEADLQ 107

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           HV+P  +R+SL  G++R++S    V   K+ + + LVG ++   + E     +       
Sbjct: 108 HVEPKLERISLVAGMQRLFSWRPWVELAKTLLIVCLVGALVWSDVEEAAPDAMKTAWLGG 167

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              L  A   V  +   +   +  L V D   ++ +    L M+++E+K E K S G+P 
Sbjct: 168 AEGLSLAVAHVSGLASRLACLLVVLGVGDYALAWRRHIKDLMMTREEMKREYKDSEGDPR 227

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
            K ++K++ R   +        +AT ++ NPTH A+ALRY   E +AP LVAK +   A+
Sbjct: 228 HKGQRKALHRQLAQGGAARGVQKATAVVVNPTHIAVALRYDVDECEAPYLVAKAREGDAR 287

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            MR+ A    I +  +  LARSL     +   IP   Y+A A
Sbjct: 288 AMREQARRLGIAVVRDIPLARSLI-HYDVGEPIPEELYQAAA 328


>gi|323152631|gb|EFZ38907.1| flagellar biosynthetic protein flhB [Escherichia coli EPECa14]
          Length = 213

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 110/181 (60%)

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE
Sbjct: 1   MMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDE 60

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +V
Sbjct: 61  FKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVV 120

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  
Sbjct: 121 AKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 180

Query: 353 K 353
           K
Sbjct: 181 K 181


>gi|332531605|ref|ZP_08407502.1| type III secretion exporter [Hylemonella gracilis ATCC 19624]
 gi|332038968|gb|EGI75397.1| type III secretion exporter [Hylemonella gracilis ATCC 19624]
          Length = 417

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 171/350 (48%), Gaps = 23/350 (6%)

Query: 15  SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL 74
           S +K++ A  +G  P SR+ S  + +L      L   +P IYS    L   LA       
Sbjct: 13  SQRKLQRAREDGQVPRSRDFSHLA-VLGGGAVTLVLTAPWIYSA---LRESLARHLSFSA 68

Query: 75  EDISHIVFLLTHL---SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131
            D+    F+L HL   +L+ + + +   ++ +   + + L     V     + P F R++
Sbjct: 69  ADVRDPKFMLDHLHTMTLTGAGISLGIAVIIVAIAVVATLAGGGWVWTTTPLAPDFSRIN 128

Query: 132 LREGIKRIYSINNLVNFMK-SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
             +G++ +++   L   +K +F+       ++ ++    Y+T+    +     +L  +  
Sbjct: 129 PIKGLQGMFTKKKLAEVVKLAFIAFF----VLALAAVFIYYTLPSISTL----VLQPSTA 180

Query: 191 TVRKVLIMILLFIATLTV-------LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            + ++L  +++    L         +D+        S+LKMS QE+KDE K   GNP +K
Sbjct: 181 GIERMLNWLVMGCGLLLAVVLLVALIDLPLQIFLHKSELKMSLQEMKDEHKDIEGNPQMK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +R++   R   + + +    +A  ++ NPTHYA+A++Y +    AP +V+KG +L+A K+
Sbjct: 241 SRRRQKQRELAQRQSLPKVPQADFVLMNPTHYAVAVKYEEKSMAAPRVVSKGADLLAMKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R +A  H +P+ + P LAR+L+    ++  IP   Y AVAQ++  +Y  K
Sbjct: 301 RDLAKAHQVPVLQSPVLARALYAHAELDQDIPSTLYTAVAQVLAYVYRLK 350


>gi|34498065|ref|NP_902280.1| secretion system apparatus protein SsaU [Chromobacterium violaceum
           ATCC 12472]
 gi|34103920|gb|AAQ60280.1| type III secretion system EscU protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 351

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 11/342 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI DA N+G    S E +    +   L Y  F     + ++   L+V ++ 
Sbjct: 3   EKTEKPTPKKIRDARNKGQVAKSTEITSGVQLAVLLAYFCFEGPHLLQALQGMLNVAISV 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q  +  I+ +      L++   R +     L ++  I + + Q  P+L    +KPS +
Sbjct: 63  VNQDLVFGINQLTGAFLELAM---RFLGGIAALVIIMTIAAVIAQIGPLLATEALKPSLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS----ANPHSI 184
           +++    +K+++S+ +L  FMKS  K+ ++ ++I   L   Y   + F+     A    +
Sbjct: 120 KLNPVSNLKQMFSMRSLFEFMKSIFKVTIL-SLIFFYLLRQYSPSIQFLPLSDVATGMRV 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                F +   LI    F     + D  +  +    +L MS ++IK E K S GNP IK 
Sbjct: 179 STQLLFWMWASLIG---FYIIFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKQ 235

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           ++K   R      + +  S++T ++ NPTH A+ LRY   E   P + A G++ +A  + 
Sbjct: 236 KRKEAHREIQSGSLADNVSKSTAVVRNPTHIAVCLRYQPGETPLPQVTAVGRDAMALHIV 295

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           K+A +  IP+ E   +AR+L  +  I   I    ++ VAQ++
Sbjct: 296 KLAEKAGIPVVENIEVARALAAKTKIGGYISAELFEPVAQIL 337


>gi|15804241|ref|NP_290280.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           EDL933]
 gi|15833834|ref|NP_312607.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. Sakai]
 gi|168748643|ref|ZP_02773665.1| EscU [Escherichia coli O157:H7 str. EC4113]
 gi|168753530|ref|ZP_02778537.1| EscU [Escherichia coli O157:H7 str. EC4401]
 gi|168759827|ref|ZP_02784834.1| EscU [Escherichia coli O157:H7 str. EC4501]
 gi|168766127|ref|ZP_02791134.1| EscU [Escherichia coli O157:H7 str. EC4486]
 gi|168772324|ref|ZP_02797331.1| EscU [Escherichia coli O157:H7 str. EC4196]
 gi|168779862|ref|ZP_02804869.1| EscU [Escherichia coli O157:H7 str. EC4076]
 gi|168785595|ref|ZP_02810602.1| EscU [Escherichia coli O157:H7 str. EC869]
 gi|168798676|ref|ZP_02823683.1| EscU [Escherichia coli O157:H7 str. EC508]
 gi|195936263|ref|ZP_03081645.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. EC4024]
 gi|208808072|ref|ZP_03250409.1| EscU [Escherichia coli O157:H7 str. EC4206]
 gi|208813986|ref|ZP_03255315.1| EscU [Escherichia coli O157:H7 str. EC4045]
 gi|208819764|ref|ZP_03260084.1| EscU [Escherichia coli O157:H7 str. EC4042]
 gi|209398003|ref|YP_002273176.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. EC4115]
 gi|217326036|ref|ZP_03442120.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. TW14588]
 gi|254795655|ref|YP_003080492.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. TW14359]
 gi|261225799|ref|ZP_05940080.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258844|ref|ZP_05951377.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285068|ref|YP_003501886.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. CB9615]
 gi|12518474|gb|AAG58844.1|AE005597_2 escU [Escherichia coli O157:H7 str. EDL933]
 gi|3414914|gb|AAC31525.1| L0046 [Escherichia coli]
 gi|13364055|dbj|BAB38003.1| type III secretion system EscU protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187771533|gb|EDU35377.1| EscU [Escherichia coli O157:H7 str. EC4196]
 gi|188016976|gb|EDU55098.1| EscU [Escherichia coli O157:H7 str. EC4113]
 gi|189002618|gb|EDU71604.1| EscU [Escherichia coli O157:H7 str. EC4076]
 gi|189359336|gb|EDU77755.1| EscU [Escherichia coli O157:H7 str. EC4401]
 gi|189364785|gb|EDU83204.1| EscU [Escherichia coli O157:H7 str. EC4486]
 gi|189369865|gb|EDU88281.1| EscU [Escherichia coli O157:H7 str. EC4501]
 gi|189374533|gb|EDU92949.1| EscU [Escherichia coli O157:H7 str. EC869]
 gi|189378742|gb|EDU97158.1| EscU [Escherichia coli O157:H7 str. EC508]
 gi|195957531|gb|ACG59642.1| type III secretion system protein EscU [Escherichia coli O157:H7]
 gi|195957590|gb|ACG59700.1| type III secretion system protein [Escherichia coli]
 gi|195957647|gb|ACG59756.1| type III secretion system apparatus protein SsaU [Escherichia coli]
 gi|208727873|gb|EDZ77474.1| EscU [Escherichia coli O157:H7 str. EC4206]
 gi|208735263|gb|EDZ83950.1| EscU [Escherichia coli O157:H7 str. EC4045]
 gi|208739887|gb|EDZ87569.1| EscU [Escherichia coli O157:H7 str. EC4042]
 gi|209159403|gb|ACI36836.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. EC4115]
 gi|217322257|gb|EEC30681.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. TW14588]
 gi|254595055|gb|ACT74416.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|255348328|gb|ACU09470.1| secretion system apparatus protein SsaU [Escherichia coli]
 gi|290764941|gb|ADD58902.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. CB9615]
 gi|320639370|gb|EFX08985.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. G5101]
 gi|320644814|gb|EFX13850.1| secretion system apparatus protein SsaU [Escherichia coli O157:H-
           str. 493-89]
 gi|320650078|gb|EFX18574.1| secretion system apparatus protein SsaU [Escherichia coli O157:H-
           str. H 2687]
 gi|320655425|gb|EFX23360.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661051|gb|EFX28487.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666177|gb|EFX33183.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. LSU-61]
          Length = 345

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 172/350 (49%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACL--IYLLFFFSP--GIYSVTSD- 61
            KTE P+ KK+ D   +G+   S E  A++ S IL     +Y + FF    G+ + T D 
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-VLNL 120
           L+     A +  L  + +I FLL  L +S          L +  G  +  + +I  +  +
Sbjct: 63  LNRPFLYAIREILGAVLNI-FLLYILPIS----------LIVFVGTVTTGVSQIGFIFAV 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KPS +++S++  +K I+S+ ++   +KS  K++++  I             +F   N
Sbjct: 112 EKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLN 171

Query: 181 PHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            +  L    +  F   + VL   LLF    +V D  +  H+   K+KMSK E+K E K +
Sbjct: 172 AYQALVVVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKDT 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP IK  ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++  G+
Sbjct: 228 DGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGK 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A ++ K+A  ++IP+ E+  LAR+L+K +     I   F++ VAQLI
Sbjct: 288 DAKALQIIKLAELYDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLI 337


>gi|323189404|gb|EFZ74685.1| hypothetical protein ECRN5871_2292 [Escherichia coli RN587/1]
          Length = 345

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 176/351 (50%), Gaps = 29/351 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACL--IYLLFFFSP--GIYSVTSD- 61
            KTE P+ KK+ D   +G+   S E  A++ S IL     +Y + FF    G+ + T D 
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP-VLNL 120
           L+     A +  L  + +I FLL  L +S          L +  G  +  + +I  +  +
Sbjct: 63  LNRPFLYAIREILGAVLNI-FLLYILPIS----------LIVFVGTVTTGVSQIGFIFAV 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA- 179
             +KPS +++S++  +K I+S+ ++   +KS  K++++  +I   +  +Y     + +  
Sbjct: 112 EKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVII-VLIFYFMGHSYANEFAYFTGL 170

Query: 180 NPHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           N +  L    +  F   + VL   LLF    +V D  +  H+   K+KMSK E+K E K 
Sbjct: 171 NAYQALVVVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKREAKD 226

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + GNP IK  ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++  G
Sbjct: 227 TDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETG 286

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 287 KDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|320107036|ref|YP_004182626.1| type III secretion exporter [Terriglobus saanensis SP1PR4]
 gi|319925557|gb|ADV82632.1| type III secretion exporter [Terriglobus saanensis SP1PR4]
          Length = 373

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 177/364 (48%), Gaps = 38/364 (10%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL---LFFFSPGIYSVTSDLHV 64
           ++++E  S ++ + + ++G    SRE +   +++A ++ L      F P           
Sbjct: 3   EDRSEKASEQRKKKSRDKGEGVRSRELNAAFAMMAGILVLGGSARRFVP----------- 51

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVI-----PGLLLFMMFGIGSYLIQRIPVLN 119
           L A+A +  L  + H  +    L L A+R++I     P  L+      G+ L   +    
Sbjct: 52  LWATAYREMLSALGHTEWTPESL-LDAARILILPTLGPVALVMGAAFCGALLSGMVQSGG 110

Query: 120 LN-HVKP---SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
           L  H +       R++    +K+I S   LV   KS V     G ++ + ++  +  M  
Sbjct: 111 LQFHAEALAIKTTRLNPWSNLKQIASARALVRVSKSLVP---AGIVLALGISCLHGVM-- 165

Query: 176 FISANPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSY----HQWYSKLKMSKQEIK 230
               +P ++L +    T       +LL  A L V   G+ Y      W  +LKMSKQE++
Sbjct: 166 ----DPMAVLSNFRLMTAFSASYALLLNAAWLMVAWAGFDYVMEWRSWNQRLKMSKQELR 221

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K++ G+P +K R + I R+  + +     SRAT++I NPTH+A+AL +       P 
Sbjct: 222 QEHKEAAGDPQVKGRIRQIQRAMRKRRAKVDVSRATVVIVNPTHFAVALEFSFETMQPPR 281

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++AKG++L A ++R+ A    +PI E P LARSL++ V + + IP   Y AVA ++  +Y
Sbjct: 282 VLAKGRDLHAHEIREEAMWAGVPIVENPLLARSLYRSVKVGNTIPFELYAAVAGILAFLY 341

Query: 351 HKKI 354
            +++
Sbjct: 342 RQEV 345


>gi|269796379|ref|YP_003315834.1| flagellar biosynthesis protein FlhB [Sanguibacter keddieii DSM
           10542]
 gi|269098564|gb|ACZ23000.1| flagellar biosynthesis pathway, component FlhB [Sanguibacter
           keddieii DSM 10542]
          Length = 422

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP F   +L +GIK  +    L   +K+  K ++VG ++ I++      +L     +  
Sbjct: 120 LKPKFDHFNLVKGIKNTFGGQALWQGVKALAKTLVVGLVLYIAIQNLMPVLLTAGGLSVG 179

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           ++L  A   ++ +L   +     L +LD+     +   K +MSK E+K E KQS G+P +
Sbjct: 180 ALLSAAGGGIQALLWSAVAAGIALAILDLVVVMKRNRKKTRMSKYEVKQENKQSEGDPQL 239

Query: 243 KN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           K   R K IA SR  ++M+ +   A +++ NPTH A+AL+Y +    AP +VAKG   +A
Sbjct: 240 KGAIRSKQIAMSR--NRMIASVGDADVVLVNPTHVAVALKY-EAGTGAPRVVAKGAGHVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R++A E ++P+  +  LAR+L     I   IP   Y AVAQ++
Sbjct: 297 ARIREVAAEKSVPMISDVPLARALHGACEIGEEIPADLYAAVAQVL 342


>gi|89902466|ref|YP_524937.1| type III secretion exporter [Rhodoferax ferrireducens T118]
 gi|89347203|gb|ABD71406.1| type III secretion exporter [Rhodoferax ferrireducens T118]
          Length = 385

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 33/355 (9%)

Query: 15  SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL 74
           S +K++ AL++G    SR+    + +L      L   +P ++     L VLL        
Sbjct: 13  SERKLQKALDDGQVSRSRDLGHLA-VLGTGALSLMALAPLMFD---RLRVLLRQQLSFDA 68

Query: 75  EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----VLNLNHVKPSFKRV 130
             +S+   ++T +   A+  +I G ++F      + L+  I     V +L  + P F R+
Sbjct: 69  LAVSNPTTMITRMQDMATAGLI-GCVIFAAITTVAVLLSSIAAGGWVSSLKPIMPDFSRL 127

Query: 131 SLREGIKRIYSINNLVNFMK-SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           +   G+ R+++       +K SFV  +L    IT+  T        ++S+  H++     
Sbjct: 128 NPLTGMGRMFTKEKFTEVLKMSFVAAML----ITLGTT--------YLSSTIHALAMLVL 175

Query: 190 FTVRKVLIMILLFIAT-----------LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              R  L M+  ++ +           + ++D+        S++KMS QE+K E K+S G
Sbjct: 176 QPSRAALPMLTEWLTSGMALLLLVVLLVAMVDVPLQSFLHKSRMKMSHQEMKQEHKESDG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP +K + +   R       + A  +A  ++ NPTH+A+A++Y      AP +V+KG +L
Sbjct: 236 NPQMKGKLRQRQREISHGNSVGAVPKADFVLMNPTHFAVAIKYDDKTMRAPQVVSKGADL 295

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R IA  + IP+ + P LAR+L+    ++  IP   Y AVAQ++  IY  K
Sbjct: 296 LAMKIRDIAKNNAIPVLQSPMLARALYAHAELDQDIPASLYTAVAQVLAYIYRLK 350


>gi|163733157|ref|ZP_02140601.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149]
 gi|161393692|gb|EDQ18017.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149]
          Length = 362

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 169/353 (47%), Gaps = 13/353 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+   + +K+ +A  +G    S E    +S    L+ +L     G+  + +
Sbjct: 1   MSAPDDEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLVAILVSGESGLSHLGA 60

Query: 61  DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRL----VIPGLLLFMMFGIGSYLIQR 114
            L V++  + Q      D +  V     +  + S L    V P L + +     +    R
Sbjct: 61  TLAVIIGQSAQIAPLFFDGAGTVPARGIIQATGSALLPIFVYPALAVML-----ALFATR 115

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V   + V+P   +VS+    K  Y    L  F+ SF K+++   I+ I L      M+
Sbjct: 116 GIVFAPSKVQPKLSKVSIISNAKNKYGRTGLFQFVLSFSKLMIYSAILAIFLYHRTSEMV 175

Query: 175 DFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             +   P ++++  A   + + LI +++  A +  +D  W + +   K KMS++E+ DE 
Sbjct: 176 AALHTTPQYTVILLAKICI-EFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDET 234

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K S G+P +K  ++  A+S    ++    + A ++I NPTH+A+AL++ +    APV VA
Sbjct: 235 KNSEGDPYMKQERRQRAQSLAGSQVAVEVAAADVVIVNPTHFAVALKWERAPGQAPVCVA 294

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           KG +  A ++R+IA E+ +PI  +P  AR+L     +   I P  YKAVA  I
Sbjct: 295 KGVDETALRIREIAKENAVPIHSDPPTARALHSTTNVGDQIAPEHYKAVAAAI 347


>gi|254255044|ref|ZP_04948361.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124899689|gb|EAY71532.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 379

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 167/357 (46%), Gaps = 22/357 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS   +  +KTE  + +K+  A   G    SR+ +     L  L  L    +P   +   
Sbjct: 1   MSGGQSTGDKTEKATPQKLRKAKQRGQVARSRDIATAIGTLVSL-KLAIVLAP---AWLD 56

Query: 61  DLHVLLASATQRKLED--ISHIV--FLLTHLSLSASRLV----IPGLLLFMMFGIGSYLI 112
           D   L A++   +  D    H +    +T L L    L     +P  ++      G +  
Sbjct: 57  DFRRLFAASLVERFADGGAEHAMSTLFVTALLLIGKMLAPFAAVPACIVVGSLFPGGW-- 114

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTE-NY 170
               V +  +  P  +R++   G+KR+ S  + +    +  K  ++G T+  +  +  + 
Sbjct: 115 ----VFSHENFMPKAERLNPMSGLKRLVSGKHYMQLAITVAKATVLGATLWHVGRSSIDR 170

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           F  L  +          A F V   L+++ + +A   ++D+      +    +MSK+++K
Sbjct: 171 FVGLQRVPFETALAGGAALF-VDATLVLVGVLVA-FAMIDVPLQRMLFMRGQRMSKRDVK 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           DE+KQS G P +K R + I R   R  + +    A +++ NPTHYA+AL+Y  ++  AP 
Sbjct: 229 DEMKQSEGKPEVKGRIRQIQRQMARRGIRKVVPDADVVLMNPTHYAVALKYDVSKAQAPY 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           +VAKG +  A  +R +A EH I + E P LAR+++    +N  IP   Y+AVA++++
Sbjct: 289 VVAKGIDETAHFIRDVAREHAIEVLELPPLARAIYHSSQVNQQIPAALYQAVAKVLF 345


>gi|170738283|ref|YP_001779543.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
 gi|169820471|gb|ACA95053.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
          Length = 357

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 179/357 (50%), Gaps = 36/357 (10%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ +K+++A  +G   +++   L +++L  +   LF F+   + +   LH  ++
Sbjct: 3   DEKTEQPTRRKLKEARKKGT--VAKSVDLVAAVLVLVSLALFTFA--WHPLLDALHQNIS 58

Query: 68  SA-----TQRKLEDI-SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            A     ++R +  + S ++  L + +++   + +   L   +       +Q    ++ +
Sbjct: 59  RAIDFCGSERSMHTLWSVLMHELANGAIACCAISVAAALAAALSIGAQVGLQ----VSFD 114

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI---ITISLTENYFTMLDFIS 178
            V P   R+S   G+K+I+S   L++ +K  VK +++      + +SL    F ++    
Sbjct: 115 PVMPKMDRLSPAAGLKQIFSKRALIDLLKMSVKAVVIAAALWHVIVSL----FPLITSAM 170

Query: 179 ANP----HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIKDE 232
           A P      IL+HA   +     ++ L +       + W    W      +MSK E+K E
Sbjct: 171 AEPLAALSQILWHALLKLLFAAAVLFLVVGV-----VDWKIQHWLMMRAQRMSKDEVKRE 225

Query: 233 IKQSYGNPIIKNRQKSIARSRIR---HKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +K+  G P +K+ ++  A+  +      +  A  RA +++ NPTHYA+ALRY++ E   P
Sbjct: 226 LKEREGEPKLKHERRKRAKELVNGGGESLSGAVGRANVVVVNPTHYAVALRYVRGETPLP 285

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           V++AKG +  A+++R +A +  +PI   P +AR+L+ +V  +  IP   ++ VA ++
Sbjct: 286 VVLAKGIDDAAREIRALATQRGVPIVANPPVARALY-EVAEHRPIPSELFEVVAAIL 341


>gi|145298359|ref|YP_001141200.1| flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851131|gb|ABO89452.1| Flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 281

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 5/198 (2%)

Query: 161 IITISLTENYFTMLD--FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
           I+TI  T +     D   + A   ++L    + +  + ++I+L  A + ++ I   +  W
Sbjct: 59  ILTIGFTLDRDQAFDPNAMGAMLPALLRELVYPLGLLWMLIILCCALIPIVAIDVPFQTW 118

Query: 219 --YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
               +LKM+KQE+KDE K S G P +K R + +       +MM    +A +IITNPTHY+
Sbjct: 119 NHTRQLKMTKQEVKDEFKDSEGKPEVKGRIRQLQMQMAMRRMMGDVPKADVIITNPTHYS 178

Query: 277 LALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           +AL+Y I     AP +VAKG + IA K+R+IA E+ IPI   P+L R++F    I   IP
Sbjct: 179 VALKYDIAKPGAAPKVVAKGTDEIAMKIREIAREYEIPIMPSPALTRAIFHSTEIGHEIP 238

Query: 336 PVFYKAVAQLIYKIYHKK 353
              + AVAQ++  IY  K
Sbjct: 239 EGLFAAVAQVLAYIYQLK 256


>gi|68164507|gb|AAY87236.1| predicted flagellar biosynthetic protein [uncultured bacterium
           BAC17H8]
          Length = 385

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 34/368 (9%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
            EN     KTE P+ ++++ A  EG    S+E  +F+++ A L+ L    SP + S    
Sbjct: 3   EENQDGQEKTEEPTQRRLQKAAEEGRILTSKEVMVFTTLAAGLV-LFMGLSPFVASGLDA 61

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASR----LVIPGLLLFMMFGIGSYLIQRIPV 117
              L    +           F L  L L   R    LVI   L+  M  I   ++ +  V
Sbjct: 62  WGSLFRIDSG----------FNLDTLGLVKVRYAFWLVILATLVVGMPLIVVIILTQAAV 111

Query: 118 LNLNHVKPS--FK--RVSLREGIKRIYSINNLVNFMKSFVKIIL---VGTIITI-SLTEN 169
             LN    +  FK  R+    G+KRI+S+  LV   KS +K+ L   +G ++    L + 
Sbjct: 112 GGLNFAAQAMNFKGNRIDPIAGLKRIFSVKGLVELAKSVLKVGLLFGIGALVIYHQLPQL 171

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
            F     +S   +       F V  +LI +L+  A    +D  W  H     L+M+ +E+
Sbjct: 172 VFLSSSSLSQGVNRAAQAFPFLVGGLLIALLVIAA----IDYAWQKHTHTQSLRMTLKEV 227

Query: 230 KDEIKQSYGNPIIKNR------QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           KDE KQ+ G+P ++ +      Q++   SR R  +      AT ++TNPTH+A+AL+Y  
Sbjct: 228 KDESKQTEGSPEVRAKIRRMQYQQAQESSRQREALGN-VGDATTVVTNPTHFAVALKYAA 286

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            +  APV++A G+  +A ++ + A E  +     P LAR+L+    I   I    Y AVA
Sbjct: 287 GQEGAPVVLAMGRGQMAMQIIERAKEARVRTLRIPMLARALYFTSEIGGEITEGLYNAVA 346

Query: 344 QLIYKIYH 351
            ++  ++ 
Sbjct: 347 VVLAYVFR 354


>gi|111115097|ref|YP_709715.1| flagellar biosynthesis protein FlhB [Borrelia afzelii PKo]
 gi|110890371|gb|ABH01539.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
          Length = 372

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 172/351 (49%), Gaps = 16/351 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+ +K + A  EG    S E +   S+L                + S   + LA
Sbjct: 23  EGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFF--------FMLSYFALDLA 74

Query: 68  SATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIG-SYLIQRIPV---LNLNH 122
           +  + +   +S ++ +  + +  +  R ++  ++LF    +  ++ +  I V   +    
Sbjct: 75  AVFKEQASKLSEVMKMSVYAMGFAYIRSIMGYVVLFFFASLAVNFFVNIIQVGFFITFKS 134

Query: 123 VKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           ++P + +VS    R      +S     N  KS +K++++  I    +  N   +      
Sbjct: 135 LEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEY 194

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+
Sbjct: 195 TLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGD 254

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ +
Sbjct: 255 PLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEM 314

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A  ++KIA E+NIP+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 315 ALTIKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|323530321|ref|YP_004232473.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1001]
 gi|323387323|gb|ADX59413.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1001]
          Length = 373

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 173/350 (49%), Gaps = 24/350 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           + KTE P+ K++ D   +G    S +   A+  ++++  L +    F   + S+ S    
Sbjct: 3   EEKTEQPTDKRLRDTRKDGETSKSTDLVDAATMAAVVGVLAFAAANFGGALRSIVS---T 59

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L  A+ R  E +  +   L  L   A  +++P +    +  + + + Q    +    V 
Sbjct: 60  ALEFASGRHDEPL--MFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVV 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN- 180
           P  K VS  +G+KRI+S   +++ +K  +K  ++G ++       +FT+   L  I  + 
Sbjct: 118 PDLKHVSPVDGVKRIFSWRTVIDLVKMVIKAAIIGAVM-------WFTIKWILPLIVGSL 170

Query: 181 --PHSILYHAFFT-VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             P   L   F++ V KV  + +     + V+D+      +  KLKMSK E+K E KQ  
Sbjct: 171 YQPLPELSKLFWSLVIKVFAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMD 230

Query: 238 GNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
           G+P IK  +K +AR         +    A  +I NPTHYA+A+RY   E+  P+++A+G 
Sbjct: 231 GDPKIKAERKKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGM 290

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A ++R+ A + N+PI   P +AR+L+K V ++  IP   ++ VA ++
Sbjct: 291 DESAAQLRRFARDANVPIIGNPPVARALYK-VGLDEPIPEELFETVAAIL 339


>gi|224534194|ref|ZP_03674772.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S]
 gi|224514296|gb|EEF84612.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S]
          Length = 372

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIESNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+NIP+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNIPLMENKLLARALYTNVKVNEEIPREYWEVVSKILVRVY 365


>gi|216263954|ref|ZP_03435948.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1]
 gi|215979998|gb|EEC20820.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1]
          Length = 372

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + +VS    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ +A  ++KIA E+NIP+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEMALTIKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|225164042|ref|ZP_03726327.1| type III secretion exporter [Opitutaceae bacterium TAV2]
 gi|224801348|gb|EEG19659.1| type III secretion exporter [Opitutaceae bacterium TAV2]
          Length = 369

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 178/362 (49%), Gaps = 24/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D  D KTE PS K++ +A   G    + E  +   + A    L      G   V  
Sbjct: 1   MAEQDQ-DQKTELPSEKRLSEAYERGQFAKTPELGIVFMLAAAFGALSMACEDGARRVAE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL-FMMFGIGSYLIQRIPVLN 119
                 A+    +L  +  I   L    ++   +   G L   M+  +G+ L+    +  
Sbjct: 60  -----YATGIFEQLHTV-RISSGLVPAPVAMGAVTFAGALAPLMIASVGAALLSG-GIQT 112

Query: 120 LNHVKP---SFKRVSLR--EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              V P    FK   L    G  R++S N LV+    F+K+    ++I  SL     T+L
Sbjct: 113 GFRVTPKALGFKPEKLNPVTGFGRVFSKNTLVHGGIDFLKV----SVIAFSLWLAARTLL 168

Query: 175 -DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD-IGWSYHQWYS---KLKMSKQEI 229
            D +   P    Y   F  R ++ ++   +  + ++  I ++Y +W+    +L M++QE+
Sbjct: 169 GDPLFTAPVETAYLGEFIHRSLMALLARLLLAMGIIAAISYAY-EWFKTHRELMMTRQEV 227

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E +QS G+ ++K+  + +AR  +R +M+ A   A +++TNPTHYA+AL+Y +  + AP
Sbjct: 228 KEERRQSDGDALVKSALRRMARRLMRRQMLAAVPTADVVVTNPTHYAVALKYERGIDKAP 287

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           V++AKG   +A +++ IA EH +P  E+ ++AR LF    +   IP   Y+AVA ++  +
Sbjct: 288 VVLAKGDRRLALRIKAIAAEHEVPTVEDRAVARLLFATGEVGKPIPGELYQAVAGILAMV 347

Query: 350 YH 351
           Y 
Sbjct: 348 YR 349


>gi|149926083|ref|ZP_01914346.1| Type III secretion component protein SctU [Limnobacter sp. MED105]
 gi|149825371|gb|EDM84582.1| Type III secretion component protein SctU [Limnobacter sp. MED105]
          Length = 353

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 163/341 (47%), Gaps = 12/341 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT-SDLHVLLA 67
            KTE P+ KK++DA  +G   +S++A +   +L  + Y+ FF+    Y+   S+L  L+ 
Sbjct: 4   EKTEKPTQKKLDDARKKGQVSVSKDAQILFKLL--MFYMFFFWLSQDYAARFSELLDLIV 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL---NHVK 124
           +A  ++    S  +F     S+     V   + L  +  I + LI    +  L     + 
Sbjct: 62  TAGLKQPWTFSESIF-----SMFFDLFVAITVPLVAVCAIAATLITWAQIGFLVSPEALT 116

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PSFK+      IK ++S  +LV  + S VK++++  +  +   +N   M+    A     
Sbjct: 117 PSFKKFDAVSNIKNMFSKKSLVQLLLSIVKVLILSVVGYLVFKDNMGDMIYSYRAGLTQF 176

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                  ++ ++ + L+    + V+D    Y      L+MS Q+I DE KQS GNP +K 
Sbjct: 177 FDVLVHVLKAIIFVSLIIFMVIAVIDWSVEYMHHIKNLRMSHQDIADERKQSMGNPQLKQ 236

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R K   RS I +  +   + A  I+ NPTH ++AL Y   ++D P ++A G +  A ++R
Sbjct: 237 RMKREHRS-ILNSSLTRVAGAKAIVANPTHISVALDYEPGKHDLPYILAMGTDDEALRIR 295

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + A ++ IPI     LAR L++    +  I     +  AQ+
Sbjct: 296 EFAKKNGIPIIVNVKLARMLYQDCEEDEYIQREHLELAAQV 336


>gi|167820158|ref|ZP_02451838.1| type III secretion system protein [Burkholderia pseudomallei 91]
          Length = 318

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 147/280 (52%), Gaps = 12/280 (4%)

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  V P+   ++  
Sbjct: 36  LVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPA 92

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
           EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P   L   F   R
Sbjct: 93  EGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---R 148

Query: 194 KVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
           ++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G+P++K  +K +
Sbjct: 149 EILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRL 208

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
           AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG +  A  +R+ A +
Sbjct: 209 ARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDEAAIALRRAAQD 268

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 269 ANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307


>gi|219684572|ref|ZP_03539515.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr]
 gi|219685776|ref|ZP_03540587.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04]
 gi|219671934|gb|EED28988.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr]
 gi|219672715|gb|EED29743.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + +VS    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                  +S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLNSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|115377814|ref|ZP_01465002.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365146|gb|EAU64193.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1]
          Length = 269

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 134/263 (50%), Gaps = 10/263 (3%)

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           A   VI GL+ F+  G          +  ++ + P  ++++  +GIK I+S   +V  +K
Sbjct: 10  AGGAVIAGLVEFLQVG---------ALFTMDPLIPKLEKLNPIQGIKNIFSKKTVVEMIK 60

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           + VKI +   ++   + +    ++  +  +   +L      V +V   + L     ++ D
Sbjct: 61  NLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLAVMGEMVYRVCTRVALVFLLFSIFD 120

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
           I W    +  ++ MSK ++K E K+S G+P  K  +K + +  +    MEA   A +I+T
Sbjct: 121 IWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHRKQMHQEIMEGAQMEAVKDADVIVT 180

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NP H A+AL+Y + ++ AP ++AKG +  A++++ IA E ++P      LA +L + V +
Sbjct: 181 NPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAIARESDVPTLRNVPLAHALLR-VDV 239

Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
              IP   Y AVA+++  +Y  K
Sbjct: 240 GQDIPEELYDAVAEVLNFVYGLK 262


>gi|170767115|ref|ZP_02901568.1| EscU protein [Escherichia albertii TW07627]
 gi|170124553|gb|EDS93484.1| EscU protein [Escherichia albertii TW07627]
 gi|315617516|gb|EFU98122.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 317

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +  +  +KPS +++S++  +K I+S+ ++    KS  K++++  I            ++F
Sbjct: 80  IFAVEKIKPSAQKISVKNNLKNIFSVKSIFELFKSVFKLVIIALIFYFMGHSYASEFINF 139

Query: 177 ISANPHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            + N +  L    +  F   + VL   LLF    +V D  +  H+   K+KMSK E+K E
Sbjct: 140 TNLNAYQTLVLVAFFVFLLWKGVLFGYLLF----SVFDFWFQKHEGLKKMKMSKDEVKRE 195

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + GNP IK  ++ +        +     ++T+I+ NPTH A+ L Y   E   P+++
Sbjct: 196 AKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVI 255

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             G++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 256 ETGKDAKALQIIKLAERYDIPVIEDIPLARSLYKNINKGQYITEDFFEPVAQLI 309


>gi|51598532|ref|YP_072720.1| flagellar biosynthesis protein FlhB [Borrelia garinii PBi]
 gi|51573103|gb|AAU07128.1| flagellar biosynthesis protein [Borrelia garinii PBi]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + +VS    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                  +S +        K+    ++F+A + VLD  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLNSGISIVLVLAYKICFFSVMFLAIVGVLDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++I NP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKDRMRVVLSTNLRVAIPQADVVIVNPEHFAVAIKWDSETMLAPRVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|45657253|ref|YP_001339.1| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600491|gb|AAS69976.1| flagellar protein [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 649

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 178/354 (50%), Gaps = 24/354 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILAC--LIYLL--FFFSPGIYSVTSDLH 63
           + +TE  S ++  +   +GN P S E      +LA   L+YL+  +FF    Y +   +H
Sbjct: 301 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIH 360

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-------GLLLFMMFGIGSYLIQRIP 116
            +    T    E ++    LL + S     L+ P       G ++  +  +G     R  
Sbjct: 361 GV-GLRTDMSSESVTE---LLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRAL 416

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             N + ++P+FK+V        + +   L N  KS  K+ L+  +  I +++++F +L  
Sbjct: 417 SFNFSRIRPNFKKV--------LPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLS 468

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                   +     +  K+ +++ + +  ++++D  +  +++   LKM+  E K E K+S
Sbjct: 469 GEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKES 528

Query: 237 YGNPIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
            G+  ++ R++ +AR  + + KM+     A ++ITNPTH+A+AL Y    + AP+++AKG
Sbjct: 529 DGDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKG 588

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +  A  + +IA E+ +P  E+   AR L+++V + + +P  FY+A+A ++ ++
Sbjct: 589 VDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 642


>gi|167915301|ref|ZP_02502392.1| type III secretion system protein [Burkholderia pseudomallei 112]
          Length = 312

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 147/280 (52%), Gaps = 12/280 (4%)

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  V P+   ++  
Sbjct: 30  LVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPA 86

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
           EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P   L   F   R
Sbjct: 87  EGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---R 142

Query: 194 KVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
           ++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G+P++K  +K +
Sbjct: 143 EILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRL 202

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
           AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG +  A  +R+ A +
Sbjct: 203 ARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRAAQD 262

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 263 ANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 301


>gi|89072287|ref|ZP_01158866.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
 gi|89051819|gb|EAR57271.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
          Length = 375

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 183/356 (51%), Gaps = 22/356 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ + D KTE  + +KI  A  +G  P +++ +  +  +A +++  F+F   I  +  
Sbjct: 1   MSQSTSQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVIVF--FYFQ--IDVIWQ 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV---IPGLLLFMMFGIGSYLIQRIPV 117
            L+ +         +D+      +  L  S + ++   +P   L ++  I S L+    +
Sbjct: 56  ALNGVFKLNMTMSRDDLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                + P   ++    GIKR++S  +LV  +KS +K+ ++  ++ + L  N   +L   
Sbjct: 116 FYPAGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDTNLSRLLGMQ 175

Query: 178 S-------ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +       +   +IL+H       +L+ I LF+  L  +DI +   +   +LKM+KQE+K
Sbjct: 176 NLPLKQGVSLIMTILFHGI-----LLMGIALFLFGL--IDIPYQKWEHAKELKMTKQELK 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
           +E K + GNP IK R + I +   R ++ +A  +A ++I NPTHYA+A++Y  T ++A  
Sbjct: 229 EEFKTNEGNPEIKQRIRQIQQQFARRQIDKAVPKADVVIVNPTHYAVAIKYDTTLSEALF 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +VAKG +  A  ++ IA +H++ I   P L R+++    I  AIP   Y AVA ++
Sbjct: 289 VVAKGIDETAMHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHIL 344


>gi|294828141|ref|NP_712789.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293385988|gb|AAN49807.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 646

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 178/354 (50%), Gaps = 24/354 (6%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILAC--LIYLL--FFFSPGIYSVTSDLH 63
           + +TE  S ++  +   +GN P S E      +LA   L+YL+  +FF    Y +   +H
Sbjct: 298 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIH 357

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIP-------GLLLFMMFGIGSYLIQRIP 116
            +    T    E ++    LL + S     L+ P       G ++  +  +G     R  
Sbjct: 358 GV-GLRTDMSSESVTE---LLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRAL 413

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
             N + ++P+FK+V        + +   L N  KS  K+ L+  +  I +++++F +L  
Sbjct: 414 SFNFSRIRPNFKKV--------LPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLS 465

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                   +     +  K+ +++ + +  ++++D  +  +++   LKM+  E K E K+S
Sbjct: 466 GEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKES 525

Query: 237 YGNPIIKNRQKSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
            G+  ++ R++ +AR  + + KM+     A ++ITNPTH+A+AL Y    + AP+++AKG
Sbjct: 526 DGDRSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKG 585

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +  A  + +IA E+ +P  E+   AR L+++V + + +P  FY+A+A ++ ++
Sbjct: 586 VDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 639


>gi|110677564|ref|YP_680571.1| flagellar biosynthesis protein FlhB [Roseobacter denitrificans OCh
           114]
 gi|109453680|gb|ABG29885.1| flagellar biosynthetic protein FlhB [Roseobacter denitrificans OCh
           114]
          Length = 362

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 11/249 (4%)

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
           L+LF   GI         V     V+P   ++S+    K  +    L  F+ SF K+I+ 
Sbjct: 109 LVLFATRGI---------VFAPTKVQPKLSKISVISNAKNKFGRTGLFQFVLSFSKLIIY 159

Query: 159 GTIITISLTENYFTMLDFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
             I+ + L      M+  +   P ++++  A   + + LI +++  A +  +D  W + +
Sbjct: 160 SAILAVFLYHRTNEMVAALQTTPQYTVILLAKICI-EFLIYVVIVSAIIGGIDAIWQHFE 218

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
              K KMS++E+ DE K S G+P +K  ++  A+S    ++    + A ++I NPTH+A+
Sbjct: 219 HLRKNKMSRKEVMDETKNSEGDPYMKQERRQRAQSLAGTQVAVEVAAADVVIVNPTHFAV 278

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL++ +T   APV VAKG +  A ++R+IA E+ +PI  +P  AR+L     I   I P 
Sbjct: 279 ALKWDRTPGQAPVCVAKGVDETALRIREIATENAVPIHSDPPAARALHATTNIGDQIAPE 338

Query: 338 FYKAVAQLI 346
            YKAVA  I
Sbjct: 339 HYKAVAAAI 347


>gi|94986993|ref|YP_594926.1| translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731242|emb|CAJ54605.1| translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 360

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 166/345 (48%), Gaps = 17/345 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSV-------TSD 61
           +KTE P+ KK+ +A  +G+   S++ +   ++    +Y +  +     ++       T  
Sbjct: 7   DKTEPPTPKKLREAREQGDVAKSQDVAAAMTMFGASLYFIGMWQDVFSNLLNLIELPTKF 66

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           +H+    A    +  I+ I F           ++IP +   M   + + L+Q   + ++ 
Sbjct: 67  IHLPFEEALPATISGIASIAF----------SILIPIIATLMFLAVAADLMQIGVLFSVK 116

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
              P    ++ ++   +++SI NL  F+K+ +K+ ++   + I L+     +    S N 
Sbjct: 117 SAIPKLDNLNPKKWFSKVFSIKNLGEFVKNILKVSVLTITVWIILSNYIKELFAIASGNI 176

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            S+ Y     +R + + + +  + +  +D  +   Q+  +  MSKQEIK E K   G+P+
Sbjct: 177 WSLWYILGSVLRDLTLSVSMVFSVIACIDFMFQKWQYNKRQMMSKQEIKQEYKDMEGDPL 236

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK ++K + +       +    +A +++ NP HYA+A+ Y +     PV++AKG+ L+A+
Sbjct: 237 IKGKRKQLHQEMAMQNPVNKVRKAKVVVVNPIHYAIAIDYEKGRTLLPVILAKGEGLLAQ 296

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +M  +A E  IP+ +   LA SLF     +S IP      VA+++
Sbjct: 297 RMVAVAQEEGIPVMQNIPLAHSLFMDGIEDSYIPRNLIAPVAEVL 341


>gi|170690587|ref|ZP_02881754.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis
           C4D1M]
 gi|170145022|gb|EDT13183.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis
           C4D1M]
          Length = 373

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 175/352 (49%), Gaps = 28/352 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYS-VTSDLH 63
           + KTE P+ K++ D   +G    S +   A+  ++++  L +    F   + S VT+ L 
Sbjct: 3   EEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVVGVLAFAAASFGGALRSIVTTALE 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
              AS       D   +   L  L   A  +++P +    +  + + + Q    +    V
Sbjct: 63  --FASGNH----DQPLMYGKLFDLGKQALIVIVPCVGAAALAAVAALMPQVGFQIATKPV 116

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN 180
            P  K VS  +G+KRI+S   +++ +K  VK  ++G ++       +FT+   L  I  +
Sbjct: 117 VPDLKHVSPVDGVKRIFSWRTVIDLVKMIVKAAIIGVVM-------WFTIKWILPLIVGS 169

Query: 181 ---PHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
              P   L   F++  ++   + + +FIA + V+D+      +  KLKMSK E+K E KQ
Sbjct: 170 LYQPLPELSKLFWSLLIKLFAVAVAVFIA-IGVIDVKLQRVLFLRKLKMSKDEVKRERKQ 228

Query: 236 SYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
             G+P IK  +K +AR         +    A  +I NPTHYA+A+RY   E+  P+++A+
Sbjct: 229 MDGDPKIKAERKKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIAR 288

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G +  A ++R+ A + N+PI   P +AR+L++ V I+  IP   ++ VA ++
Sbjct: 289 GMDESAAQLRRFARDANVPIIGNPPVARALYR-VGIDEPIPEELFETVAAIL 339


>gi|167742987|ref|ZP_02415761.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|167828533|ref|ZP_02460004.1| type III secretion system protein [Burkholderia pseudomallei 9]
 gi|167906942|ref|ZP_02494147.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167923134|ref|ZP_02510225.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 318

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 147/280 (52%), Gaps = 12/280 (4%)

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           L +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  V P+   ++  
Sbjct: 36  LVEMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPA 92

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
           EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P   L   F   R
Sbjct: 93  EGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---R 148

Query: 194 KVLIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
           ++L   L+ +A L +L    D+      +  K+KM+K E+K E K   G+P++K  +K +
Sbjct: 149 EILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRL 208

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
           AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ A +
Sbjct: 209 ARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAAQD 268

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 269 ANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307


>gi|167724018|ref|ZP_02407254.1| type III secretion system protein [Burkholderia pseudomallei DM98]
          Length = 318

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 146/278 (52%), Gaps = 12/278 (4%)

Query: 76  DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135
           +++  ++    ++LSA   V+P L +  + GIG  ++Q    ++L  V P+   ++  EG
Sbjct: 38  EMTARLYQFGGIALSA---VMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEG 94

Query: 136 IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195
           +K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P   L   F   R++
Sbjct: 95  LKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPE-LSRIF---REI 150

Query: 196 LIMILLFIATLTVL----DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
           L   L+ +A L +L    D+      +  K+KM+K E+K E K   G+P++K  +K +AR
Sbjct: 151 LAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRLAR 210

Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311
                      + A  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ A + N
Sbjct: 211 ELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDEAAIALRRAAQDAN 270

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           IPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 271 IPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307


>gi|284007636|emb|CBA73289.1| type III secretion inner membrane protein YscU,SpaS,EscU,HrcU,SsaU
           [Arsenophonus nasoniae]
          Length = 352

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 173/345 (50%), Gaps = 17/345 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG--IYSVTSDLHVLL 66
            KTE P+ K++ +A  +G    S E     ++L   + L +    G  +++   +L +L 
Sbjct: 6   EKTEKPTQKRMNEARKKGQVIKSNE---IVTVLKMAVILGYLIVEGHALFNAIGELIIL- 61

Query: 67  ASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNH 122
              T R L    D++    + + + L    +V  GL++ ++  I  S ++Q  P+     
Sbjct: 62  ---TVRSLSLPIDVAAKTIIGSFIMLLLRFMV--GLVVVLIVTICLSCIVQTGPIWAHKS 116

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +  SF ++++ +  K+I+S+ NL  F K+ +K+I++ T++   L + Y  +  ++     
Sbjct: 117 LAFSFNKMNIIKNAKQIFSMKNLFEFGKNILKVIVL-TLVFYYLLDYYVNLFQYLPTCGI 175

Query: 183 SILYHAFFTVRKVLIM-ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
                  FT+ + L    L+      + D G+ Y+    +LKMSK++ K E K + GNP 
Sbjct: 176 DCGVMVTFTLIQWLWGGFLVCYIVFAIADYGFQYYHVMKELKMSKEDTKREFKDTEGNPQ 235

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK +++ I R    + ++    ++T+II NPTH  + L Y       P +V K Q+ +A 
Sbjct: 236 IKQKRREIQREITSNSVVANVRKSTVIIRNPTHIVVCLYYQPGITPLPQVVEKFQDNMAL 295

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            + K+A +  IP+ E   LAR+LF+QV     IP   ++ VA+L+
Sbjct: 296 HIVKLAEKAGIPMVENILLARALFQQVETGQMIPESLFEPVAELL 340


>gi|217032176|ref|ZP_03437675.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128]
 gi|216946166|gb|EEC24775.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128]
          Length = 153

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 1/128 (0%)

Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
            Q+ + LKM+KQE+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHY
Sbjct: 5   RQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHY 64

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL++ + E+  PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ IP
Sbjct: 65  AVALKFDE-EHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIP 123

Query: 336 PVFYKAVA 343
              ++AVA
Sbjct: 124 EELFEAVA 131


>gi|224533751|ref|ZP_03674339.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a]
 gi|224513044|gb|EEF83407.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a]
          Length = 372

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S   + N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|224533155|ref|ZP_03673755.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23]
 gi|224511882|gb|EEF82283.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23]
          Length = 372

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S   + N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|260222456|emb|CBA32037.1| hypothetical protein Csp_D30120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 384

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 123/235 (52%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +L  + P F R++   G   ++S   L++  K  +   ++  I  + L      M   
Sbjct: 114 VSSLKPLMPDFSRLNPLSGFANLFSKKKLLDTAKMALMTAILFVIAGLFLKSGMQEMAAM 173

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +     + + H    +   L ++LL I    ++D+         ++KMS QE+K+E K+S
Sbjct: 174 LLQPSPAAISHLTQWMTGGLGLMLLVILLAAMVDVPLQLFLHKDQMKMSHQEVKEEGKES 233

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP +K + +   R   +   + A  +A  ++ NPTH+A+A+RY +    AP +V+KG 
Sbjct: 234 DGNPQLKGKIRQKQREMAQKSSVGAVPKADFVVMNPTHFAVAIRYDEASMRAPRVVSKGA 293

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +L+A K+R +A +H+IP+ + P LAR+L+    ++  IP   Y AVAQ++  +Y 
Sbjct: 294 DLLAMKIRDVAKQHSIPVLQSPMLARALYANAELDQDIPSTLYTAVAQVLAYVYR 348


>gi|307725656|ref|YP_003908869.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1003]
 gi|307586181|gb|ADN59578.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1003]
          Length = 388

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 173/351 (49%), Gaps = 26/351 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           + KTE P+ K++ D   +G    S +   A+  +++L  L +    F   + S+ +    
Sbjct: 25  EEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVLGVLAFAAAHFGGALRSIVNIALE 84

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            ++ +  + L     +   L  L   A  +++P +    +  + + + Q    +    V 
Sbjct: 85  FVSGSHDQPL-----MFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVV 139

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN- 180
           P  K VS  +G KRI+S   +++ +K  VK  ++G ++       +FT+   L  I  + 
Sbjct: 140 PDLKHVSPVDGFKRIFSWRTVIDLVKMIVKAAIIGAVM-------WFTIKWILPLIVGSL 192

Query: 181 --PHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
             P   L   F++  V+   + + +FI  + V+D+      +  KLKMSK E+K E KQ 
Sbjct: 193 YQPLPELSKLFWSLLVKLCAVAVAVFI-VIGVVDVKLQRVLFLRKLKMSKDEVKRERKQM 251

Query: 237 YGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
            G+P IK  +K +AR         +    A  +I NPTHYA+A+RY   E+  P+++A+G
Sbjct: 252 DGDPKIKAERKKLAREFATSAAPAQRVGFANALIVNPTHYAVAVRYAPAEHPLPLVIARG 311

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +  A ++R+ A + N+PI   P +AR+L+K V I+  IP   ++ VA ++
Sbjct: 312 MDESAAQLRRFARDANVPIIGNPPVARALYK-VGIDEPIPQELFETVAAIL 361


>gi|312148485|gb|ADQ31144.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi JD1]
          Length = 372

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S   + N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|195941374|ref|ZP_03086756.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi 80a]
 gi|312149299|gb|ADQ29370.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi N40]
          Length = 372

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S   + N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|225549000|ref|ZP_03769975.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a]
 gi|225370226|gb|EEG99664.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a]
          Length = 372

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S   + N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|216264909|ref|ZP_03436901.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a]
 gi|221217819|ref|ZP_03589287.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a]
 gi|215981382|gb|EEC22189.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a]
 gi|221192496|gb|EEE18715.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a]
          Length = 372

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|304408584|ref|ZP_07390205.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS183]
 gi|307305412|ref|ZP_07585160.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           BA175]
 gi|304352405|gb|EFM16802.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS183]
 gi|306911715|gb|EFN42140.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           BA175]
          Length = 349

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 25/349 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67
            KTE P+ K++ +A N G   + + A + + +   +I   F +  P +      L  L  
Sbjct: 3   EKTEKPTEKRLREARNRGQ--VIKSAEIVTGLQMAIILGYFLYEGPALVQAIMALIDLTI 60

Query: 68  SATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVK 124
           +A    LE  +  IV     L+L      + GL L ++F I  G+ L+Q  PV     + 
Sbjct: 61  NAINLPLETAAEQIVGTFAMLALR----FLGGLTLVLVFTIVVGN-LVQTGPVWATESIM 115

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PS  ++++    K++ S+ +L    K+ VK+ ++  +        Y+ +  +++A  +  
Sbjct: 116 PSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVF-------YYLLHRYVNAFQYLP 168

Query: 185 LYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY 237
           L      +  +  MI      F+    +  I     Q YS   +LKMSK + K E K S 
Sbjct: 169 LCGEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSE 228

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K +++   R      +     +AT+++ NPTH A+ L Y + E   P ++ K ++
Sbjct: 229 GNPEMKQKRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAED 288

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +A  +  +A +  +PI E   LAR+LFK V     IP   ++ VA+L+
Sbjct: 289 HMALHIVALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELL 337


>gi|225551932|ref|ZP_03772872.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1]
 gi|225370930|gb|EEH00360.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1]
          Length = 372

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|225550105|ref|ZP_03771065.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a]
 gi|225369217|gb|EEG98670.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a]
          Length = 372

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|15594617|ref|NP_212406.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi B31]
 gi|218249479|ref|YP_002374795.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7]
 gi|223888974|ref|ZP_03623565.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b]
 gi|226321590|ref|ZP_03797116.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26]
 gi|3023773|sp|Q44760|FLHB_BORBU RecName: Full=Flagellar biosynthetic protein flhB
 gi|1165257|gb|AAA85596.1| FlhB [Borrelia burgdorferi]
 gi|2688194|gb|AAC66676.1| flagellar biosynthesis protein (flhB) [Borrelia burgdorferi B31]
 gi|218164667|gb|ACK74728.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7]
 gi|223885790|gb|EEF56889.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b]
 gi|226232779|gb|EEH31532.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26]
          Length = 372

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|1185062|gb|AAB58971.1| flagellar export protein [Borrelia burgdorferi]
          Length = 372

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|224531929|ref|ZP_03672561.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116]
 gi|224511394|gb|EEF81800.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116]
          Length = 372

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S     N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPKWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIFYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   + +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQTGISIVLVLAYKICFFSVIFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ +A  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEMALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|330819403|ref|YP_004348265.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
           gladioli BSR3]
 gi|327371398|gb|AEA62753.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
           gladioli BSR3]
          Length = 359

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 178/351 (50%), Gaps = 28/351 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+ DA  +G   +S+ + L  +I +  + + F  + G +   S   ++++
Sbjct: 3   DEKTEEPTDKKLRDARKDGQ--VSKSSDLADAI-SMTVAIGFVMAAGAHLRDSMRQLVMS 59

Query: 68  S----ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF------MMFGIGSYLIQRIPV 117
           +     T+  + D+   ++    ++L A   +     +       M  G+   L   +P 
Sbjct: 60  ALDFVTTEHSIPDMFDRLYRFGGIALLAVVPLALAAAMAGLMGSAMQVGLQIALKPVMP- 118

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            NLN + P        EG+K+I+SI  ++   K  VK  L+  ++ + +    F ++   
Sbjct: 119 -NLNSLNPG-------EGLKKIFSIKTVIETAKMIVKAALIFAVMWV-VIRGLFPLVSGS 169

Query: 178 SANPHSILYHAFFTVRKVLIMI--LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
              P + L   ++ +   L+MI  ++FI  +   D+      +  ++KMSK E+K E K 
Sbjct: 170 IYQPLAELSAMYWGILVKLMMIAAVIFI-VVGAGDVKLQKMLFMKQMKMSKDEVKREHKN 228

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P+IK  +K IAR  + +      +RA +++ NPTHYA+ALRY   E+  PV++AKG
Sbjct: 229 DEGDPMIKGERKRIARE-MANSPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKG 287

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +  A  +R+ A E  +PI   P +AR+L+K V ++  IP V ++ +A ++
Sbjct: 288 MDEAAAAIRRAAAEAEVPIVGNPPVARALYK-VGVDEPIPEVLFETIAAIL 337


>gi|77464899|ref|YP_354403.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides 2.4.1]
 gi|77389317|gb|ABA80502.1| flagellar biosynthesis pathway, component FlhB [Rhodobacter
           sphaeroides 2.4.1]
          Length = 359

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 174/355 (49%), Gaps = 24/355 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D  D+K   PS +K+E+A  +G  P S++  + ++  A L+         +   T D+ 
Sbjct: 2   TDGEDDKPHEPSQRKLEEARRKGEVPRSQDL-VTAAAYAGLLAAAMTLGDRVLQRTGDIG 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI----------- 112
             L     R           L+ L    ++  + GLL   +  +    +           
Sbjct: 61  STLLGQADR-----------LSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALL 109

Query: 113 -QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
            QR  V+  + + P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +     
Sbjct: 110 AQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSD 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            +   +   P   L   F  + + L+++++    + ++D  W   +   + +MS+QE+ +
Sbjct: 170 DIFGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVE 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G+P +K +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  APV 
Sbjct: 230 EAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVC 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           VAKG + +A ++R+ A E  +PI  +P  AR+L   V I   I P  Y+AVA  +
Sbjct: 290 VAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344


>gi|149200776|ref|ZP_01877751.1| Flagellar protein FlhB [Roseovarius sp. TM1035]
 gi|149145109|gb|EDM33135.1| Flagellar protein FlhB [Roseovarius sp. TM1035]
          Length = 384

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 176/364 (48%), Gaps = 25/364 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFS-PGIYSV 58
           M++ D    KTE P+ K+ ++A  EG    S E  +  ++ +  LI     ++ PG+  +
Sbjct: 1   MADADDGQEKTEEPTQKRRQEAREEGRITTSTEVFVLVTLGMGALILSAGQWALPGLAGL 60

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            +   V+  + +   +  I H   ++  + L+A     PGL L ++  +   L+ +  + 
Sbjct: 61  WATGLVIDGAQSLDAMM-IGHTRDMMLWM-LAAG----PGLGLPLLAAV---LMAQSAMG 111

Query: 119 NLNHVKPSF----KRVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYF 171
            LN    +     ++++   G+ R+ S+  LV+ +K+ +K+ L+   G ++   L     
Sbjct: 112 GLNFAPKALGFKPEKMNPMTGLGRMVSMKALVDLLKAVLKVTLLLAAGVLMLYPLLPALG 171

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           +       +   +   A   V   L++ L+ IA    LD+GW  H     ++MS+Q+IKD
Sbjct: 172 SSSALAPGDAMVLFGTAMLRVLGGLLLGLVVIA---ALDLGWQIHSNTKSMRMSRQDIKD 228

Query: 232 EIKQSYGNP----IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E K+S G+P     ++ RQ   +R     K +     AT IITNPTH+A+ALRY    + 
Sbjct: 229 ESKESEGSPEQKGAMRRRQMQASRRASERKALADVPMATAIITNPTHFAIALRYEPGTDT 288

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP ++A G+  +A+ + +      +   + P LAR+L+    I   IP V + AVA ++ 
Sbjct: 289 APRILAMGKGPMAQAVIRRGRRAGVTTLQVPPLARALYFTGAIGREIPDVLFAAVAVILA 348

Query: 348 KIYH 351
            ++ 
Sbjct: 349 HVWR 352


>gi|304414279|ref|ZP_07395647.1| type III secretion system apparatus protein [Candidatus Regiella
           insecticola LSR1]
 gi|304283493|gb|EFL91889.1| type III secretion system apparatus protein [Candidatus Regiella
           insecticola LSR1]
          Length = 353

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 169/350 (48%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ KKI+DA  +G    S E +  + ++  LIY         +++T +  +  A+
Sbjct: 3   EKNEKPTPKKIKDAREKGQVIKSVEITSGAQLVVVLIY---------FTLTGNDLIDQAA 53

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM-MFGI-GSYLIQRIPVLNLNHVKPS 126
           A  R     S I  L   ++++A R+      L M + GI G  LI    ++ ++ + P 
Sbjct: 54  ALIR-----SSIEQLSQPMNIAALRIGAEATALLMHITGILGGALIIITLLMGISQIGPL 108

Query: 127 FKRVSLREGIKRIYSINNLVNFM---------KSFVKIILVGTIITISLTENYFTMLDFI 177
           +   +L    +RI  INNL N +         KS +KI+ +  I    L+  Y     ++
Sbjct: 109 WAPKALSIKGERINPINNLRNLISFRSLFELGKSLIKIVSLSLIFGYLLS-RYAPTFGYL 167

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           S          F T+   L+  L+    L  +LD  +  H    +LKMS +EIK E K S
Sbjct: 168 SYCGSVCAMPVFGTLMSWLLGSLIACYLLFALLDYSFQRHSVMKQLKMSPEEIKREYKDS 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK +++ + +      +    +R+T ++ NPTH+A+ L Y   E   P+++ KG 
Sbjct: 228 EGDPHIKQKRRELQQQIQSGSLSTNVNRSTAVVRNPTHFAVCLFYHPEEAPLPIVLEKGH 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + +AK + K+A    +P+ E  +LAR+L++ V   + IP   ++ VA L+
Sbjct: 288 HEMAKTIIKMAERAGVPVIENVALARALYRDVDCGNTIPEKLFEPVATLL 337


>gi|255019035|ref|ZP_05291161.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           F2-515]
          Length = 193

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 112/193 (58%)

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           +++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V  +K+ +
Sbjct: 1   MLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALL 60

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
            I L+  +  I   ++  T++ +   N    L   F   +   + + L IA + +LD  +
Sbjct: 61  LITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFY 120

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
             + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPT
Sbjct: 121 QRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPT 180

Query: 274 HYALALRYIQTEN 286
           H ++ +RY +T++
Sbjct: 181 HISVVMRYDKTKD 193


>gi|119953071|ref|YP_945280.1| flagellar biosynthesis protein FlhB [Borrelia turicatae 91E135]
 gi|119861842|gb|AAX17610.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135]
          Length = 373

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 184/359 (51%), Gaps = 32/359 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+ +K + A  EG    S E ++  ++  C+++ +FFF    Y     + V   
Sbjct: 24  EGRTELPTEQKKQKAREEGQVLKSTEINM--AVTLCILFAVFFFMLS-YFAYELMDVFRW 80

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPV---LNLNHV 123
            A   KL +I  I   +  L  +  R ++  +++F++   I  +LI  + V   +    +
Sbjct: 81  QAG--KLPEIMSIS--IYSLGFAYIRSMLGYVIVFLLISFIVVFLINVVQVGFLITFKPI 136

Query: 124 KPSFKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENY--------FT 172
            P + RV+    + IK  + S +   N  KS  KI ++  I  I L  N         ++
Sbjct: 137 VPKWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISFIYYIMLRSNIGKISRMFEYS 196

Query: 173 MLDFISANPHSILYH-AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           + D IS    S+ Y   FF+V        + +  +++LD  +   ++   LKM+K+E+K 
Sbjct: 197 LEDGISV-ILSLAYRICFFSV--------IVLMGISILDYLFQRTRYIENLKMTKEEVKQ 247

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K+  G+P++++R +   R  +   +     +A ++ITNP H+A+A+++      AP +
Sbjct: 248 ERKEMEGDPLLRSRMRERMREILNANLKVTVPQADVVITNPEHFAVAIKWDSNTMLAPRV 307

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +AKGQ+ IA  +++IA E+NIP+ E   LAR L+  V +N  IP  +++ V++++ K+Y
Sbjct: 308 LAKGQDEIAFVIKQIARENNIPVMENKPLARDLYANVDVNEEIPREYWEIVSKILVKVY 366


>gi|126174201|ref|YP_001050350.1| secretion system apparatus protein SsaU [Shewanella baltica OS155]
 gi|125997406|gb|ABN61481.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS155]
          Length = 349

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 162/349 (46%), Gaps = 25/349 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67
            KTE P+ K++ +A N G   + + A + + +   +I   F +  P +      L  L  
Sbjct: 3   EKTEKPTEKRLREARNRGQ--VIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTI 60

Query: 68  SATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVK 124
           +A    LE  +  IV     L+L      + GL L ++F I  G+  +Q  PV     + 
Sbjct: 61  NAINLPLETAAEQIVGTFAMLALR----FLGGLTLVLVFTIVVGNS-VQTGPVWATESIM 115

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PS  ++++    K++ S+ +L    K+ VK+ ++  +        Y+ +  +++A  +  
Sbjct: 116 PSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVF-------YYLLHRYVNAFQYLP 168

Query: 185 LYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY 237
           L      +  +  MI      F+    +  I     Q YS   +LKMSK + K E K S 
Sbjct: 169 LCEEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSE 228

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K +++   R      +     +AT+++ NPTH A+ L Y + E   P ++ K ++
Sbjct: 229 GNPEMKQKRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAED 288

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +A  +  +A +  +PI E   LAR+LFK V     IP   ++ VA+L+
Sbjct: 289 HMALHIVALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELL 337


>gi|226320572|ref|ZP_03796132.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805]
 gi|226233991|gb|EEH32712.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805]
          Length = 372

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 125/236 (52%), Gaps = 3/236 (1%)

Query: 118 LNLNHVKPSFKRVSL---REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           +    ++P + ++S    R      +S   + N  KS +K++++  I    +  N   + 
Sbjct: 130 ITFKSLEPRWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKIS 189

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                   S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K
Sbjct: 190 KLSEYTLQSGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERK 249

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  G+P++++R K   R  +   +  A  +A ++ITNP H+A+ +++      AP ++AK
Sbjct: 250 EMEGDPLLRSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVVIKWDSETMLAPKVLAK 309

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           GQ+ IA  ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 310 GQDEIALTIKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|85059286|ref|YP_454988.1| secretion system apparatus protein SsaU [Sodalis glossinidius str.
           'morsitans']
 gi|84779806|dbj|BAE74583.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 354

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 164/355 (46%), Gaps = 35/355 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSDLHVLL 66
             KTE P+ K+  D   EG    S E +  S + LA ++     F+  +   TS L VL 
Sbjct: 2   GEKTEKPTEKRRRDRRKEGQVIKSNEIT--SGVQLAAILLFWHLFAEAVIERTSTLIVLS 59

Query: 67  ASATQRKLEDISHIVFL-----LTHLSLSASRLVIPGLLLFMMFG-------IGSYLIQR 114
            S   R         FL     L H+ LS++ L      LF +FG       +GS L+Q 
Sbjct: 60  ISLINRP--------FLFAFNQLLHVVLSSAGL------LFALFGGMLALATVGSVLLQI 105

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY---F 171
             VL    V    +R++    +K+I+S+++LV   KS  K++++ T+I   L   Y   F
Sbjct: 106 GFVLASKAVGIKGRRINPVSNLKQIFSLHSLVELCKSTGKVVVL-TLIFAGLFYYYATTF 164

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             L F ++     L+  F   R +   ++ F   L VLD  +  H    + +MSK+E+K 
Sbjct: 165 QALPFCNSRCALPLFTTF--TRWMWFGLIGFYIVLGVLDYAFQAHNTLKQQRMSKEEVKQ 222

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G+P +K R+  +        +     R+ ++I NPTH A+ L Y   +   P +
Sbjct: 223 EYKDAEGDPYMKQRRHEMQHEIQSGSLAHNVKRSAVVIRNPTHIAICLGYHPIDMPVPRV 282

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + KG    A ++  +A    +P+ E   LAR+LF+ V     IP   ++ VA L+
Sbjct: 283 LDKGTAERAGQIVDLAQRAAVPVVENIPLARALFQHVGCGDRIPETLFEPVAVLL 337


>gi|194292000|ref|YP_002007907.1| sctu: non flagellar t3S system conserved inner membrane protein.
           flhb/hrpn/yscu/spas family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225904|emb|CAQ71851.1| SctU: non flagellar T3S system conserved inner membrane protein.
           flhB/hrpN/yscU/spaS family [Cupriavidus taiwanensis LMG
           19424]
          Length = 344

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 167/345 (48%), Gaps = 18/345 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            K    + +K+++A   G  P S +   A +F  +LA L  L  +F   +    S  H  
Sbjct: 5   EKNLEATRRKLDEARKRGEVPRSSDVTSAVVFLGVLAGLWLLGRYF---VRLFQSLWHSA 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL----LFMMFGIGSYLIQRIPVLNLN 121
           + S  Q  L D   +V     L  +A+R ++ G+L    L ++ GI    +Q  P++   
Sbjct: 62  MGSVPQ-HLADQQMLV-----LGEAAARFLLMGVLPIVGLALVCGIVGAFLQVGPLVAFE 115

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +KP   R++  EG+KR++++ NLVN  K  VKI+L+  ++ +         +    A P
Sbjct: 116 QIKPDLARLNPAEGLKRMFAVRNLVNLAKILVKILLLAGLVYVLALGAIEDGVRTGYARP 175

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             IL    + + ++     +    + V+D     HQ+  + +MS  E + E K++ G+PI
Sbjct: 176 AEILLLVAYIILRMCCWAAVIYLVMAVVDYVHERHQFMKRQRMSVDEYRREYKETQGDPI 235

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +  R+++         + E    +T ++ + T YA+ALRY       P +VAKG   +A 
Sbjct: 236 MAGRRRAAFFEAAFFGVSERVRVSTAVVYS-TQYAVALRY-DGPGTLPRVVAKGSGQVAA 293

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++R+ A ++ +P   +  LA+ L+  VP++  I    ++ VA+L+
Sbjct: 294 RIRQAAADYLVPSAFDSDLAQRLYLNVPLDRFIDRTLFERVAELM 338


>gi|187918146|ref|YP_001883709.1| flagellar biosynthesis protein FlhB [Borrelia hermsii DAH]
 gi|119860994|gb|AAX16789.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
          Length = 373

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 185/358 (51%), Gaps = 30/358 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+ +K + A  +G    S E +  S++   +++ +FFF    Y     ++V   
Sbjct: 24  EGRTELPTEQKKQKAREDGQVLKSTEIN--SAVTLFILFAVFFFMLS-YFAQELMNVFRW 80

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPV---LNLNHV 123
            A   KL +I  +   +  LS S  + +   +++F++   I S+LI  I V   +    V
Sbjct: 81  QAG--KLPEIMSVS--IYALSFSYIKPMFGYMIVFLLISFIVSFLINVIQVGFLITFKPV 136

Query: 124 KPSFKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENY--------FT 172
            P + RV+    + IK  + S +   N  KS  KI ++  I  I L  N         ++
Sbjct: 137 VPRWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISLIYYIMLKSNIGKISRMSEYS 196

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           + D IS     IL  A+    ++    ++ +  +++LD  +   ++   LKM+K+E+K E
Sbjct: 197 LEDGISV----ILSLAY----RICFFSIIVLMGISILDYLFQRTRYIENLKMTKEEVKQE 248

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K+  G+P++++R +   R  +   +     +A ++ITNP H+A+A+++      AP ++
Sbjct: 249 RKEMEGDPLLRSRMRERMREILNTNLRVTVPQADVVITNPEHFAVAIKWDSNTMLAPKVL 308

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           AKGQ+ IA  +++IA E+NIP+ E   LAR L+  V +N  IP  +++ V++++ K+Y
Sbjct: 309 AKGQDEIAFVIKQIARENNIPVMENKPLARELYANVDVNEEIPREYWEIVSKILVKVY 366


>gi|126463741|ref|YP_001044855.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105405|gb|ABN78083.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17029]
          Length = 359

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 176/358 (49%), Gaps = 30/358 (8%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D  ++K   PS +K+E+A  +G  P S++          L+    +      ++T    
Sbjct: 2   TDGEEDKPHEPSQRKLEEARRKGEVPRSQD----------LVTAAAYAGLLAAAMTLGDR 51

Query: 64  VLLASATQRKLEDISHIVFLLTHLSL---SASRLVIPGLLLFMMFGIGSYLI-------- 112
           VL     QR  E  S ++     LS      ++  + GLL   +  +    +        
Sbjct: 52  VL-----QRTGEIGSTLLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGG 106

Query: 113 ----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
               QR  V+  + + P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +  
Sbjct: 107 ALLAQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILR 166

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
               +L  +   P   L   F  + + L+++++    + ++D  W   +   + +MS+QE
Sbjct: 167 RSDDILGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQE 226

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           + +E K + G+P +K +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  A
Sbjct: 227 LVEEAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRA 286

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           PV VAKG + +A ++R+ A E  +PI  +P  AR+L   V I   I P  Y+AVA  +
Sbjct: 287 PVCVAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344


>gi|221640820|ref|YP_002527082.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides KD131]
 gi|221161601|gb|ACM02581.1| Type III secretion exporter [Rhodobacter sphaeroides KD131]
          Length = 359

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 24/355 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D  ++K   PS +K+E+A  +G  P S++  + ++  A L+         +   T D+ 
Sbjct: 2   TDGEEDKPHEPSQRKLEEARRKGEVPRSQDL-VTAAAYAGLLAAAMTLGDRVLQRTGDIG 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI----------- 112
             L     R           L+ L    ++  + GLL   +  +    +           
Sbjct: 61  STLLGQADR-----------LSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALL 109

Query: 113 -QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
            QR  V+  + + P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +     
Sbjct: 110 AQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSD 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            +   +   P   L   F  + + L+++++    + ++D  W   +   + +MS+QE+ +
Sbjct: 170 DIFGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVE 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G+P +K +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  APV 
Sbjct: 230 EAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVC 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           VAKG + +A ++R+ A E  +PI  +P  AR+L   V I   I P  Y+AVA  +
Sbjct: 290 VAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344


>gi|160875393|ref|YP_001554709.1| secretion system apparatus protein SsaU [Shewanella baltica OS195]
 gi|160860915|gb|ABX49449.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS195]
 gi|315267593|gb|ADT94446.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS678]
          Length = 349

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 25/349 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF-SPGIYSVTSDLHVLLA 67
            KTE P+ K++ +A N G   + + A + + +   +I   F +  P +      L  L  
Sbjct: 3   EKTEKPTEKRLREARNRGQ--VIKSAEIVTGLQMAIILGYFLYEGPALVQAIMALIDLTI 60

Query: 68  SATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVK 124
            A    LE  +  IV     L+L      + GL L ++F I  G+ L+Q  PV     + 
Sbjct: 61  HAINLPLETAAEQIVGTFAVLALR----FLGGLTLVLVFTIVVGN-LVQTGPVWAAESIM 115

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PS  ++++    K++ S+ +L    K+ VK+ ++  +        Y+ +  +++A  +  
Sbjct: 116 PSMDKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVF-------YYLLHRYVNAFQYLP 168

Query: 185 LYHAFFTVRKVLIMILL----FIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY 237
           L      +  +  MI      F+    +  I     Q YS   +LKMSK + K E K S 
Sbjct: 169 LCGEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSE 228

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K +++   R      +     +AT+++ NPTH A+ L Y + E   P ++ K ++
Sbjct: 229 GNPEMKQKRRETQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAED 288

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +A  +  +A +  +PI E   LAR+LFK V     IP   ++ VA+L+
Sbjct: 289 HMALHIVALAEKAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELL 337


>gi|75764710|ref|ZP_00744124.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487802|gb|EAO51604.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 271

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 139/250 (55%)

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           P L+L   F + +Y+IQ   + +   +KP   R++ +    R++S  +LV+ +KS   + 
Sbjct: 11  PILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLVDILKSLFYMG 70

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
           L+G +  +   +N   ++  I  N  + L      ++ + + IL+ +  L+++D  +   
Sbjct: 71  LIGYVAYVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVLSIIDFIYQRW 130

Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
           ++   +KM K+E+K E K + G+P +K ++K+   + ++  + +    AT I+ NPTH +
Sbjct: 131 EYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMHAILQGTIAKKMDGATFIVNNPTHIS 190

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           + LRY +  + AP++VAKG++ +A  +R +A E  IP+ E   LARSL+ QV  +  IP 
Sbjct: 191 VVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYYQVEEDETIPE 250

Query: 337 VFYKAVAQLI 346
             Y AV +++
Sbjct: 251 DLYVAVIEVM 260


>gi|332559798|ref|ZP_08414120.1| FlhB2 [Rhodobacter sphaeroides WS8N]
 gi|332277510|gb|EGJ22825.1| FlhB2 [Rhodobacter sphaeroides WS8N]
          Length = 359

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 174/355 (49%), Gaps = 24/355 (6%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D  ++K   PS +K+E+A  +G  P S++  + ++  A L+         +   T D+ 
Sbjct: 2   TDGEEDKPHEPSQRKLEEARRKGEVPRSQDL-VTAAAYAGLLAAAMTLGDRVLQRTGDIG 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI----------- 112
             L     R           L+ L    ++  + GLL   +  +    +           
Sbjct: 61  STLLGQADR-----------LSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALL 109

Query: 113 -QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
            QR  V+  + + P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +     
Sbjct: 110 AQRSLVVAPSKLAPRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSD 169

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            +   +   P   L   F  + + L+++++    + ++D  W   +   + +MS+QE+ +
Sbjct: 170 DIFGLLWMEPKIALGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVE 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K + G+P +K +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  APV 
Sbjct: 230 EAKDAEGDPHVKAQRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVC 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           VAKG + +A ++R+ A E  +PI  +P  AR+L   V I   I P  Y+AVA  +
Sbjct: 290 VAKGVDEVAARIRERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAV 344


>gi|296125237|ref|YP_003632489.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM
           12563]
 gi|296017053|gb|ADG70290.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM
           12563]
          Length = 399

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 137/232 (59%), Gaps = 4/232 (1%)

Query: 123 VKPSFKRV--SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +KP+FKR+  +     +R++ S  NL+N  K   K++++  +   ++      + +  + 
Sbjct: 159 LKPNFKRIAPTWSNFKERVFVSSQNLMNLAKILFKMVVISFLTFTTIYGKSTELFNMTNM 218

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                ++  FF V ++L  +++F+  ++  D  +   Q+ + LKM+K E+K+E K+  G+
Sbjct: 219 ELPQAMHLFFFIVLEMLAKVIVFMIIVSAFDYFFQRRQYINSLKMTKHEMKEEFKEMEGD 278

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K++ + +AR  +   M++A   A ++ITNPTH+A+AL+Y +  + APV+ AKG + I
Sbjct: 279 PLVKSQLQDMARKIVSRTMLKAVPEADVVITNPTHFAVALKY-ENGDYAPVVTAKGADHI 337

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A ++++IA E+++ I E   LAR L+  V I   IP   +  V++++ ++Y 
Sbjct: 338 ALRIKEIAKENDVQIVENKPLARELYFNVEIGQYIPEKLFHVVSRILGEVYR 389


>gi|322615094|gb|EFY12017.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619935|gb|EFY16808.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622247|gb|EFY19092.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627769|gb|EFY24559.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632886|gb|EFY29630.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636623|gb|EFY33326.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641184|gb|EFY37826.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644881|gb|EFY41414.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650283|gb|EFY46697.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655856|gb|EFY52158.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660182|gb|EFY56421.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665252|gb|EFY61440.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669509|gb|EFY65657.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673435|gb|EFY69537.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677363|gb|EFY73427.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679974|gb|EFY76013.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687446|gb|EFY83418.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194101|gb|EFZ79300.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198582|gb|EFZ83683.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202908|gb|EFZ87943.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208628|gb|EFZ93566.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211164|gb|EFZ96011.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217605|gb|EGA02320.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218954|gb|EGA03464.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223784|gb|EGA08088.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229407|gb|EGA13530.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232630|gb|EGA16726.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240332|gb|EGA24376.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242679|gb|EGA26700.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245890|gb|EGA29878.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323256473|gb|EGA40206.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260036|gb|EGA43661.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323271476|gb|EGA54897.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 352

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I        +L+AS
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIAS 55

Query: 69  AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120
            T   Q   +  S+ +  LTH  + +    +   LLF+  G+     GS  +Q   V+  
Sbjct: 56  ITFTLQLVNKPFSYALTQLTHALIES----LTSALLFLGAGVIVATVGSVFLQVGGVIAS 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A 
Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167

Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           P+  L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K  
Sbjct: 168 PYCGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG 
Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|83747856|ref|ZP_00944889.1| HrcU [Ralstonia solanacearum UW551]
 gi|207739220|ref|YP_002257613.1| hrp protein hrcu [Ralstonia solanacearum IPO1609]
 gi|83725503|gb|EAP72648.1| HrcU [Ralstonia solanacearum UW551]
 gi|206592593|emb|CAQ59499.1| hrp conserved protein hrcu [Ralstonia solanacearum IPO1609]
          Length = 354

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 169/352 (48%), Gaps = 28/352 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+EDA  +G    ++ A L ++++     LL   +   +       + LA
Sbjct: 3   DEKTEQPTDKKLEDAHKDGET--AKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLA 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                    +  +   L H++L    + +P   +F +    +   Q   VL+   V+   
Sbjct: 61  LDVDSSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELKM 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175
             ++   G+KRI+S++++++ +K  +K            +IL+  I+  +    Y +++D
Sbjct: 121 NAINPASGLKRIFSMSSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAA----YQSVMD 176

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            I+    ++L      VR +     LF+  L   D G     +    +MSK E+K E K 
Sbjct: 177 -IAEIGMTLL------VRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228

Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           S G+P IK  +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AK
Sbjct: 229 SEGDPHIKGERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAK 288

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G +  A  +R+ A    IPI   P LAR+L++ V +  A+P   ++ VA+++
Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVL 339


>gi|167568047|ref|ZP_02360963.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis
           EO147]
          Length = 377

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 33/353 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----------FFSPGIYS 57
            KTE P++KK+ DA  +G    S E +    +   L Y LF                I  
Sbjct: 3   EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGAHLLQAFEALVDVSIAV 62

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V  D     A+AT R    +  +   L   +L  + LVI   ++  +  IG       P+
Sbjct: 63  VNDDF----AAATARWTSALGAV---LIRFTLGMAVLVIAMTVVAAIAQIG-------PL 108

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L +  +KPS  +++    +K+++S+ +L  F KS  K+ ++  I    L   Y   L F+
Sbjct: 109 LAVEALKPSLDKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIF-FYLIRQYAPSLQFL 167

Query: 178 SANPHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
              P   +        ++L      ++ F     + D  +  +    +L MS ++IK E 
Sbjct: 168 ---PLCSVECGLAVSTQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEF 224

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K S GNP IK++++ I R      +    +++T+++ NPTH A+ L Y + E   P ++ 
Sbjct: 225 KNSEGNPEIKHKRREIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIE 284

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            G++ +A  +  +A    +P+ E   LAR+L  ++ +   IPP  ++ VA L+
Sbjct: 285 IGRDKLALHIVALAERERVPVVENVPLARALANRLDVGQRIPPDLFEPVAHLL 337


>gi|207724585|ref|YP_002254982.1| hrp protein hrcu [Ralstonia solanacearum MolK2]
 gi|206589807|emb|CAQ36768.1| hrp conserved protein hrcu [Ralstonia solanacearum MolK2]
          Length = 354

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 168/352 (47%), Gaps = 28/352 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+EDA  +G    ++ A L ++++     LL   +   +       + LA
Sbjct: 3   DEKTEQPTDKKLEDAHKDGET--AKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLA 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                    +  +   L H++L    + +P   +F +    +   Q   VL+   V+   
Sbjct: 61  LDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELKM 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175
             ++   G+KRI+S+ ++++ +K  +K            +IL+  I+  +    Y +++D
Sbjct: 121 NAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAA----YQSVMD 176

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            I+    ++L      VR +     LF+  L   D G     +    +MSK E+K E K 
Sbjct: 177 -IAEIGMTLL------VRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228

Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           S G+P IK  +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AK
Sbjct: 229 SEGDPHIKGERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPQEYGLPRIIAK 288

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G +  A  +R+ A    IPI   P LAR+L++ V +  A+P   ++ VA+++
Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVL 339


>gi|225619293|ref|YP_002720519.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae
           WA1]
 gi|225214112|gb|ACN82846.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae
           WA1]
          Length = 400

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 137/232 (59%), Gaps = 4/232 (1%)

Query: 123 VKPSFKRV--SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +KP+FKR+  +     +R++ S  NL+N  K   K+I++  +   ++      + + I+ 
Sbjct: 160 LKPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVISLLTFTTIYGKRTELFNMINM 219

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                +   FF V ++L  +++F+  ++  D  +   Q+ + LKM+K E+K+E K+  G+
Sbjct: 220 GLSQAMNLFFFIVLEMLAKVIIFMIIVSAFDYFFQKRQYINSLKMTKHEMKEEFKEMEGD 279

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K++ + +AR  +   M+++   A ++ITNPTH+A+AL+Y +  + AP++ AKG + I
Sbjct: 280 PLVKSQLQEMARKIVSRTMLKSVPEADVVITNPTHFAVALKY-ENGDYAPIVTAKGADHI 338

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A K+++IA ++++ I E   LAR L+  V +   IP   +  V++++ ++Y 
Sbjct: 339 ALKIKEIARQNDVQIVENKPLARELYYNVELGQYIPEKLFHVVSRILGEVYR 390


>gi|300697466|ref|YP_003748127.1| Hypersensitivity response secretion protein hrcU, type III
           secretion exporter [Ralstonia solanacearum CFBP2957]
 gi|299074190|emb|CBJ53735.1| Hypersensitivity response secretion protein hrcU, Type III
           secretion exporter [Ralstonia solanacearum CFBP2957]
          Length = 354

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 168/352 (47%), Gaps = 28/352 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+EDA  +G    ++ A L ++++     LL   +   +       + LA
Sbjct: 3   DEKTEQPTDKKLEDAHKDGE--TAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLDLA 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                    +  +   L H++L    + +P   +F +    +   Q   VL+   V+   
Sbjct: 61  LDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELKM 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175
             ++   G+KRI+S+ ++++ +K  +K            +IL+  I+  +    Y +++D
Sbjct: 121 NAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAA----YQSVMD 176

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            I+    ++L      VR +     LF+  L   D G     +    +MSK E+K E K 
Sbjct: 177 -IAEIGMTLL------VRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228

Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           S G+P IK  +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AK
Sbjct: 229 SEGDPHIKGERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPDEYGLPRIIAK 288

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G +  A  +R+ A    IPI   P LAR+L++ V +  A+P   ++ VA+++
Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVL 339


>gi|194734066|ref|YP_002114435.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194709568|gb|ACF88789.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
          Length = 352

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I        +L+AS
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIAS 55

Query: 69  AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120
            T   Q   +  S+ +  LTH  + +    +   LLF+  G+     GS  +Q   V+  
Sbjct: 56  ITFTLQLVNKPFSYALTQLTHALIES----LTSALLFLGAGVIVATVGSVFLQVGVVIAS 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A 
Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167

Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           P+  L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K  
Sbjct: 168 PYCGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG 
Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|226327763|ref|ZP_03803281.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198]
 gi|225203467|gb|EEG85821.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198]
          Length = 139

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 7/133 (5%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M++QEIKDE KQ  G+P +K R +    +  R +MM     A +I+TNPTHYA+AL+Y  
Sbjct: 1   MTRQEIKDEFKQQEGDPQLKARIRQQQHAMSRRRMMADVPNADVIVTNPTHYAVALQY-- 58

Query: 284 TEND---APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
             ND   AP ++AKG   IA K+++I  E+ IP+ E P LAR+L++   I  AIP   Y 
Sbjct: 59  --NDKMTAPKVLAKGAGAIALKIKEIGAENRIPLLEAPPLARALYRHSEIGHAIPSTLYA 116

Query: 341 AVAQLIYKIYHKK 353
           AVA+++  +Y  K
Sbjct: 117 AVAEVLAWVYQLK 129


>gi|282891999|ref|ZP_06300476.1| type III secretion inner membrane protein SctU [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281498041|gb|EFB40383.1| type III secretion inner membrane protein SctU [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 356

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 17/346 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYL----LFFFSPGIYSVTSDLH 63
            KTE  + KK+ DA N+G    S++  S F+ I++  + L      F   G ++V +  H
Sbjct: 3   EKTEKATPKKLRDARNKGQVAKSQDLPSAFTFIVSIWVTLAASKFLFDHLGSFTVMT-FH 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +   +    + D+   +  LT + +++    IP L +  + G+    +   P+  L   
Sbjct: 62  QIAKGSLDTAIPDL--YIQGLTEIFITS----IPILGMVSVIGVLINFLVVGPMFALEVF 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS--ANP 181
           K   K+      +K  + +  LV  +KS +KI +   I+   + ++   ++  +S   + 
Sbjct: 116 KFDIKKFDPISNLKSKFKLKTLVELLKSVLKISIACYIVYDVMWKSLPVLIRAVSLPIDA 175

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             ++++AF  + +V+I + LF   + V D  +    + S++KM K E+K E K S G+P 
Sbjct: 176 SLMVFYAF--LMEVVIKVGLFFIIIAVADFIYQKKTFASEMKMEKFEVKQEYKNSEGDPQ 233

Query: 242 IKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           IK+++K IA+    +        RA  ++TNPTH A+A+ Y +  + AP ++AKG++ +A
Sbjct: 234 IKSKRKQIAQEIAYQEGPRGGVKRAQAVVTNPTHLAIAIGYKKDYDAAPFVLAKGEDALA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +++ K A E N+P+     LA  L+++  +   +P   Y+ +A+++
Sbjct: 294 ERIIKYAEEFNVPVVRNIKLAHKLWEEADVYEFVPEDTYELIAEIL 339


>gi|238023710|ref|YP_002907942.1| type III secretion system protein HrcU [Burkholderia glumae BGR1]
 gi|237878375|gb|ACR30707.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
           glumae BGR1]
          Length = 352

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 16/345 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+ DA  +G A  S+ + L  +I   +   + F       +   +  L+ 
Sbjct: 3   DEKTEEPTDKKLRDARKDGQA--SKSSDLADAI--SMTAAIGFVIAASAHLRDSMRQLVV 58

Query: 68  SA-----TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           SA     T   L D+   ++    ++L A   +    L   + G+    +Q    + L  
Sbjct: 59  SALDFVSTDHSLPDMFDRLYRFGGIALLAVVPL---ALAAALAGVMGSAMQVGLQIALKP 115

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V P+   ++  EG+K+I+S+  ++  +K  VK  L+  ++ + +      ++      P 
Sbjct: 116 VMPNLNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWV-VVRGLIPLVSGAIYQPL 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLT-VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
           + L   ++ +   L+MI   I  L    D+      +  ++KMSK E+K E K   G+P+
Sbjct: 175 AELSAMYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPM 234

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK  ++ IAR  + +      +RA +++ NPTHYA+ALRY   E+  PV++AKG +  A 
Sbjct: 235 IKGERRRIARE-MANAPPPRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAA 293

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +R+ A E  +PI   P +AR+L+K V ++  IP   ++ +A ++
Sbjct: 294 AIRRAAAEAEVPIVGNPPVARALYK-VGLDEPIPDALFETIAAIL 337


>gi|255030633|ref|ZP_05302584.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28]
          Length = 197

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 102/183 (55%)

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
           I   ++  T++ +   N    L   F   +   + + L IA + +LD  +  + +   L+
Sbjct: 4   IGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLR 63

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPTH ++ +RY +
Sbjct: 64  MSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDK 123

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           T++ AP L+ KG++ +A  +R++A    +P+     LARS++     +  I    YK V 
Sbjct: 124 TKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI 183

Query: 344 QLI 346
           +++
Sbjct: 184 EVM 186


>gi|254499123|ref|ZP_05111813.1| putative flagellar biosynthetic protein FlhB [Legionella
           drancourtii LLAP12]
 gi|254351662|gb|EET10507.1| putative flagellar biosynthetic protein FlhB [Legionella
           drancourtii LLAP12]
          Length = 361

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 178/360 (49%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           ++ N     KTE  +  K++ A  +G    S E +   S+L  L  +   +   ++ +  
Sbjct: 5   LAGNYVMSEKTEKATPYKLQKAKEKGQVSKSAELTTCISLLVLLGMMSALWPKQLHEIQE 64

Query: 61  DL-HVL-LASATQRKLEDISHI-VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L H+L LA+  Q  L++I+H+  F+L  L        + G+L  ++    + L Q   V
Sbjct: 65  MLRHILYLAAQMQFSLDNINHLHQFILMQLLHQWLPFALAGVLAIIL----ANLTQSGIV 120

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   + P FKR+++ +G K+++SI       KS +K++     +  +       +L   
Sbjct: 121 WSTTPLVPDFKRLNIVQGFKKLFSIKTCFEAAKSTLKLMSTFIFLFFAFKHQLTNILPLA 180

Query: 178 ---SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +A    ++ H   ++   L+++L  +A L      W + +     +MSKQE+KDE K
Sbjct: 181 LTPTAQHPGLMMHFLLSLIFQLLLLLSLLAVLDKFYTRWKFAK---DQRMSKQEVKDEYK 237

Query: 235 QSYGNPIIKNR-QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           Q  G+P IK++ ++   + R +   ++    A +IITNPTH A+AL+Y +T   AP +V 
Sbjct: 238 QREGDPKIKSKIKQLQQQLRQKTASLKQVKTADVIITNPTHLAIALKYDRTSMPAPKVVC 297

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K Q  +  +++++A +H +PI E  S AR L+  V +N  I    Y   A +  +IY ++
Sbjct: 298 KAQGEMVSQVKELARKHGVPIIENKSFARLLYHSVELNQWINKELYPFAAAIFKEIYARR 357


>gi|261885614|ref|ZP_06009653.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 266

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 144/276 (52%), Gaps = 28/276 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSIL---ACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE P+ KK+EDA N+GN   S++ S F ++L   A L+ L+ F    + ++      L
Sbjct: 6   EKTEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVNLYLYYQGL 65

Query: 66  LASATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +     R+L       F +T H  L    +++P  +  M+ GI S ++Q   +  +  + 
Sbjct: 66  IGVEITREL------FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTVEPIM 119

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-VGTIITISLTENYFTMLDFISANPHS 183
           P+F ++   +GI  ++S+  L++     VKIIL V  +  ++    ++  L F+   PH+
Sbjct: 120 PNFSKIDPIKGIANLFSLKKLIDA----VKIILKVSAVFGVA----FYFFLQFVKELPHT 171

Query: 184 ILYHAF----FTVRKVLI----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           I +  F    +   K+LI    M+LLF+  + + D+    +Q++  L+MSKQE+KDE KQ
Sbjct: 172 IFFSMFNQLLWLKEKMLILAGVMLLLFL-IIAIADVFIVRYQYFKGLRMSKQEVKDEFKQ 230

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
             G+P +K R + +     R +MM+    A ++ITN
Sbjct: 231 MEGDPKVKGRIRQLQMQAARKRMMQNIPTADVVITN 266


>gi|203284193|ref|YP_002221933.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
 gi|201083636|gb|ACH93227.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
          Length = 373

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+ ++ + A  EG    S E +  SSI   +++ +FFF    ++   +L  +  
Sbjct: 24  EGRTEVPTEQRKQKARREGQVLKSIEIN--SSISLFILFAVFFFMLSYFA--QELMDIFK 79

Query: 68  SATQRKLEDISHIVFLLTHLSLSA-SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               +  E +S  ++ L+   +    R V    ++  + G    ++Q   V+ L  + P 
Sbjct: 80  WQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPIMPK 139

Query: 127 FKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           + R++    + +K  + S++   N  KS +KI ++  I  I L  N    +  IS  P  
Sbjct: 140 WDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSN----IGKISKMPEY 195

Query: 184 ILYHAFFTVRKVLIMILLF----IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L      +  +   I  F    +  L+VLD  +   ++   LKM+K+EIK E K+  G+
Sbjct: 196 SLEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGD 255

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++++R +   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ I
Sbjct: 256 PLLRSRMRERMREILNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEI 315

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A  +++IA E+N+ I E   LAR L+  V IN  IP  +++ V++++ K+Y
Sbjct: 316 AFVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366


>gi|200389631|ref|ZP_03216242.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602076|gb|EDZ00622.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 352

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I        +L+ S
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIES 55

Query: 69  AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120
            T   Q   +  S+ +  L+H+ + +    +  +LLF+  G+     GS  +Q   V+  
Sbjct: 56  ITFTLQLVNKPFSYALTQLSHVLIES----LASVLLFLGAGVIVATVGSVFLQVGVVIAS 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A 
Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167

Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           P+  L      V  ++    + +++F   + +LD  + Y++    LKMSK ++K E K  
Sbjct: 168 PYCGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG 
Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|83716504|ref|YP_438366.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           E264]
 gi|167614812|ref|ZP_02383447.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           Bt4]
 gi|257141397|ref|ZP_05589659.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           E264]
 gi|83650329|gb|ABC34393.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis
           E264]
          Length = 379

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 166/360 (46%), Gaps = 17/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  +L   +P   +   
Sbjct: 1   MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KILVLLAPSWLAEFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS--LSAS-----RLVIPGLLLFMMFGIGSYLIQ 113
            L +L        L D++    L    S  L AS     +++ P  ++ +   +GS L  
Sbjct: 59  ALFLL-------DLVDVTGDGALANAWSAALPASLALFLKMIAPFFVVPLCVVLGSLLPG 111

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +L+  H+KP F R++    + R+ S  +   F  S +K + +  ++           
Sbjct: 112 GW-MLSGAHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAF 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L          L   F       + +   +    + D+ +    +    +M+KQE+KDE 
Sbjct: 171 LRLQHLPLQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G P +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++A
Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A  +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 291 KGVDDMALAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|167576637|ref|ZP_02369511.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           TXDOH]
          Length = 379

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 166/360 (46%), Gaps = 17/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  +L   +P   +   
Sbjct: 1   MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KILVLLAPSWLAEFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS--LSAS-----RLVIPGLLLFMMFGIGSYLIQ 113
            L +L        L D++    L    S  L AS     +++ P  ++ +   +GS L  
Sbjct: 59  ALFLL-------DLVDVTGDGALANAWSAALPASLALFLKMIAPFFVVPLCVVLGSLLPG 111

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +L+  H+KP F R++    + R+ S  +   F  S +K + +  ++           
Sbjct: 112 GW-MLSGAHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAF 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L          L   F       + +   +    + D+ +    +    +M+KQE+KDE 
Sbjct: 171 LRLQHLPLQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G P +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++A
Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A  +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 291 KGVDDMALAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|34498461|ref|NP_902676.1| flagellar biosynthesis protein FlhB [Chromobacterium violaceum ATCC
           12472]
 gi|34104316|gb|AAQ60675.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
           12472]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 172/367 (46%), Gaps = 44/367 (11%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-L 66
           D+KTE  + +++  A  +G  P S++ +  +  L   + ++F+ +PG       L  L  
Sbjct: 7   DDKTEKATPQRLRKAREQGQVPRSKDLAA-ALGLLLALKMMFWLAPGWLDDFRQLFALAF 65

Query: 67  AS-ATQRKLEDISHIVF---LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           AS + Q  LE+    +F   LL  + + A   VIP  +L +    G +      V  LN 
Sbjct: 66  ASLSGQGALENSLSKLFGGTLLLLIKMLAPLAVIPLTMLLLSLFPGGW------VFVLNQ 119

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P F+R++    + R+ S  +     KS  K +++G ++       Y    D +     
Sbjct: 120 ISPKFERMNPLAHLSRLASPKHASEIGKSIAKALVLGWLL-------YRVASDAL----- 167

Query: 183 SILYHAFFTVRKVLIMILLFIAT----------------LTVLDIGWSYHQWYSKLKMSK 226
               H FF +  + ++  L  A                   + D+      +  + +MSK
Sbjct: 168 ----HDFFALHSMPLLPTLAGAADLLLSCLLKLAAVFLLFALADLPLQVFLFLKQQRMSK 223

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QEIK+E K + G P ++ R + + +   +  + +A   A +II NP+HYA+AL+Y +   
Sbjct: 224 QEIKEEHKNTEGRPEVRQRIRQLQQQMAQRGVRKALPGADVIIVNPSHYAVALKYDENRA 283

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP +VAKG + +A  +R++A E  + +   P LAR+++    +N  IP   Y+AVAQ++
Sbjct: 284 EAPFIVAKGVDEMALYIRQLAEEMKLTVLPLPPLARAVYHTTQVNQQIPAPLYRAVAQVL 343

Query: 347 YKIYHKK 353
             +   K
Sbjct: 344 TYVLQLK 350


>gi|198243973|ref|YP_002215710.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938489|gb|ACH75822.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623457|gb|EGE29802.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 352

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 29/351 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY----SVTSDLHV 64
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I     S+T  L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ- 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLN 119
           L+       L  +SHI  L+  L+          +LLF+  G+     GS  +Q   V+ 
Sbjct: 62  LVNKPFSYALTQLSHI--LIESLA---------SVLLFLGAGVIVATVGSVFLQVGVVIA 110

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A
Sbjct: 111 SKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RA 166

Query: 180 NPHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
            P+  L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K 
Sbjct: 167 LPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKD 226

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             G+P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG
Sbjct: 227 LEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKG 286

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +  A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 287 SDAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|261246628|emb|CBG24438.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 352

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + +++F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEYKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|167905062|ref|ZP_02492267.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC
           13177]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 17/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  +L   +P   +   
Sbjct: 1   MTNQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KMLVLLAPSWLAEFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------RLVIPGLLLFMMFGIGSYLIQ 113
            L +L       +L D++    L    S++         +++ P  ++ +   +GS L  
Sbjct: 59  ALFLL-------ELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPG 111

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +L+   +KP F R++    + R+ S  +   F  S +K + +  ++           
Sbjct: 112 GW-ILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAF 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L          L   F       + +   +    + D+ +    +    +M+KQE+KDE 
Sbjct: 171 LRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G P +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++A
Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A  +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 291 KGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|238913175|ref|ZP_04657012.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 352

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLVALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S+++LV   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSLVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLVCGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QASYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|146309439|ref|YP_001189904.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp]
 gi|145577640|gb|ABP87172.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp]
          Length = 377

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 182/367 (49%), Gaps = 30/367 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---- 56
           MSE ++   KTE  S+ K++ +  +G    S++ S   S+LA L  L F  S G++    
Sbjct: 1   MSEQNSGQEKTEEASAHKLKKSKEDGQVARSKDLSTTISLLATLFILKF--SAGLFLEGL 58

Query: 57  SVTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
           S +  L  +    ++  L+D+  ++   +L  + L A  L+   L++ +    G +    
Sbjct: 59  SDSFRLSYIQFGHSEIGLDDLDTLLGYNMLVFIKLLAPMLLTSVLVVALSLVPGGW---- 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI--------ILVGTIITISL 166
             V +  +  P   +++   G+ RI+S  N    +KS +K+        +LV   +   +
Sbjct: 115 --VFSAKNFAPKLSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPELI 172

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
                +++  ISA  +        T   +L ++L+F+   + +DI    + +  K++M+K
Sbjct: 173 ALQRSSVVQAISAALN-------LTFNLILCLMLVFV-LFSFIDIPLQRYFFLKKMRMTK 224

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE K+E K   G P +K R K + R  ++ ++ +    A +II NPTHYA+AL+Y   + 
Sbjct: 225 QERKEEHKNQEGRPEVKARIKQLQRQMLQRQISKVIKNADVIIVNPTHYAVALKYDSKKA 284

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP ++AKG +  A  MR++A +H + + E P LAR+++    IN  IP   Y AVA ++
Sbjct: 285 AAPFVLAKGVDETALYMRQMAKKHELEVLEIPPLARAIYFTTQINQQIPAPLYTAVAHVL 344

Query: 347 YKIYHKK 353
             I   K
Sbjct: 345 TYILQLK 351


>gi|126442503|ref|YP_001061219.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668]
 gi|254182916|ref|ZP_04889509.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
 gi|126221994|gb|ABN85499.1| flagellar biosynthesis pathway, component FlhB [Burkholderia
           pseudomallei 668]
 gi|184213450|gb|EDU10493.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
          Length = 379

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 17/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  +L   +P   +   
Sbjct: 1   MANQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSL-KMLVLLAPSWLAEFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------RLVIPGLLLFMMFGIGSYLIQ 113
            L +L       +L D++    L    S++         +++ P  ++ +   +GS L  
Sbjct: 59  ALFLL-------ELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPG 111

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +L+   +KP F R++    + R+ S  +   F  S +K + +  ++           
Sbjct: 112 GW-ILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAF 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L          L   F       + +   +    + D+ +    +    +M+KQE+KDE 
Sbjct: 171 LRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G P +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++A
Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A  +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 291 KGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|134280655|ref|ZP_01767365.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305]
 gi|167725903|ref|ZP_02409139.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           DM98]
 gi|254299711|ref|ZP_04967160.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
 gi|134247677|gb|EBA47761.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305]
 gi|157809492|gb|EDO86662.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
          Length = 379

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 165/360 (45%), Gaps = 17/360 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  +L   +P   +   
Sbjct: 1   MANQDSGD-KSEKATPQKLRNARRQGQIARSRDLSTAIGVLVSL-KMLVLLAPSWLAEFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------RLVIPGLLLFMMFGIGSYLIQ 113
            L +L       +L D++    L    S++         +++ P  ++ +   +GS L  
Sbjct: 59  ALFLL-------ELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPG 111

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +L+   +KP F R++    + R+ S  +   F  S +K + +  ++           
Sbjct: 112 GW-ILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAF 170

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L          L   F       + +   +    + D+ +    +    +M+KQE+KDE 
Sbjct: 171 LRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEH 230

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G P +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++A
Sbjct: 231 KNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIA 290

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           KG + +A  +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 291 KGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|323975952|gb|EGB71046.1| FlhB HrpN YscU SpaS family protein [Escherichia coli TW10509]
          Length = 233

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 115/204 (56%), Gaps = 8/204 (3%)

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHA----FFTVRKVLIMILLFIATLTVL 209
           K ++V  ++ ISL  N+   L  + A P  +  +     + +V +  +++ +F A   ++
Sbjct: 4   KSVVVLVMLWISLRNNFAAFLG-LQALPFKLAMNEGLSLYASVMRNFVILFIFFA---LI 59

Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
           D+  +   +   LKM+KQE+K+E K   G P +K R + + R     ++ +   +A ++I
Sbjct: 60  DVPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVI 119

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           TNPTHYA+AL+Y Q+   AP +VAKG + IA  +R++A E+ + + E P LARS++    
Sbjct: 120 TNPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQ 179

Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353
           +N  IP   Y+A+A ++  +   K
Sbjct: 180 VNQQIPFQLYRAIAHVLTYVLQMK 203


>gi|167551609|ref|ZP_02345363.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168240935|ref|ZP_02665867.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194445677|ref|YP_002040673.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451297|ref|YP_002045425.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194404340|gb|ACF64562.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409601|gb|ACF69820.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205323578|gb|EDZ11417.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205339685|gb|EDZ26449.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 352

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I        +L+ S
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMIL-------ILIES 55

Query: 69  AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNL 120
            T   Q   +  S+ +  L+H+ + +    +  +LLF+  G+     GS  +Q   V+  
Sbjct: 56  ITFTLQLVNKPFSYALTQLSHVLIES----LASVLLFLGAGVIVATVGSVFLQVGVVIAS 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A 
Sbjct: 112 KAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RAL 167

Query: 181 PHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           P+  L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K  
Sbjct: 168 PYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDL 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG 
Sbjct: 228 EGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGS 287

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 288 DAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|261884065|ref|ZP_06008104.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 99

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 70/89 (78%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA K+R+IA  H+IP+FE+
Sbjct: 1   MINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFED 60

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             LAR+L+KQV ++  I P FYKAVA+LI
Sbjct: 61  VQLARALYKQVNVDQMIAPEFYKAVAELI 89


>gi|224584067|ref|YP_002637865.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468594|gb|ACN46424.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 352

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGGVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|16764772|ref|NP_460387.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161614161|ref|YP_001588126.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167995056|ref|ZP_02576146.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262232|ref|ZP_03162306.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|3024668|sp|P96069|SSAU_SALTY RecName: Full=Secretion system apparatus protein ssaU
 gi|1695196|emb|CAA68202.1| secretion system apparatus, SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419943|gb|AAL20346.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161363525|gb|ABX67293.1| hypothetical protein SPAB_01903 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197240487|gb|EDY23107.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205327191|gb|EDZ13955.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|267993311|gb|ACY88196.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157957|emb|CBW17452.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912407|dbj|BAJ36381.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323129694|gb|ADX17124.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988309|gb|AEF07292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 352

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + +++F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|238918897|ref|YP_002932411.1| secretion system apparatus protein SsaU [Edwardsiella ictaluri
           93-146]
 gi|48256991|gb|AAT41686.1| type three secretion apparatus protein U [Edwardsiella ictaluri]
 gi|84663105|gb|ABC60087.1| EsaU [Edwardsiella ictaluri 93-146]
 gi|238868465|gb|ACR68176.1| EsaU [Edwardsiella ictaluri 93-146]
          Length = 351

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 164/349 (46%), Gaps = 25/349 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSI-LACLIYLLFFFSPGIYSVTSD-LHVLL 66
            KTE P+ K++ DA  EG   +++   + +++ LA ++  +    P +Y+     +   L
Sbjct: 3   EKTEQPTDKRLRDAREEGQ--VAKSQDIGATVQLAVILLWMVTEGPRMYAAIGGFIDATL 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL------ 120
           A+     L+ ++    LLT  + +        L++  +FG+   LI  + +  L      
Sbjct: 61  ATVNLPLLDAMT----LLTGEAAT--------LMIRFVFGLAMLLIVTLILTGLVETGFL 108

Query: 121 ---NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                + PS +R+S     K++ S+  L    K  +KI+++G   T  +     +    +
Sbjct: 109 FAPKAIMPSAERISPLSNAKQMVSLLKLFELGKMILKIVILGLTFTYFIRSYAESFAQLV 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            A+  + L+     +  +  ++LL  A   V+D    Y     +L MS+++IK E K S 
Sbjct: 169 RADAEAGLWVTSKMILWLWGILLLLTALFAVVDYSMQYRHLRKQLMMSREDIKQEFKNSE 228

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK R++ + R      + ++ + A++++ NPTH A+ LRY + E   P +V  G+ 
Sbjct: 229 GSPEIKQRRRELHREIQSGSLADSVASASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRG 288

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             A+ +  +A    IP+ E   LAR+L         +P   + AVAQL+
Sbjct: 289 ARAQHIVTLAEALRIPVVENIPLARALIATTRPGDYVPEELFAAVAQLL 337


>gi|62180013|ref|YP_216430.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127646|gb|AAX65349.1| Secretion system apparatus SsaU [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 352

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|254253714|ref|ZP_04947031.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124898359|gb|EAY70202.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 403

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 170/357 (47%), Gaps = 39/357 (10%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK++    EG   +++ A +    +A L  ++   + G + +   L  ++ 
Sbjct: 54  DEKTEEPTHKKLDKVREEGQ--VAKSADVVE--VASLGSIVLVLTAGQHYLADTLRAIVK 109

Query: 68  SATQ-----RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            A       R+L+D+  +   L H+ + A  L+     + ++  I +   Q    ++L  
Sbjct: 110 EAVDFTHGARELQDLWTV---LVHIGVQALGLLCGIAAVALVAAIVALAPQTGFKISLKA 166

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGT----------IITISLTENYF 171
           V P    VS   G +RI+S+N+ ++  K   K  ILV            ++  +L ++  
Sbjct: 167 VMPKLASVSPGSGFQRIFSMNSAIDLAKMVGKAAILVAVMWQTIKSAMPVVASALDQSVP 226

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEI 229
            ++  +     S+L H       V ++I  F          +   +W    K +MSK E+
Sbjct: 227 QLIGVL----WSVLMHVVAVALGVFVVIGAF---------DYKLQKWLFIRKNRMSKDEV 273

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K E K+S GNP +K  +K +AR   +       +RA +++ NP HYA+ALRY   E   P
Sbjct: 274 KREHKESEGNPELKGERKRMAREMSQEGPKGGVARANVVVVNPVHYAVALRYDPAEFPLP 333

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           V++AKG +  A ++R+ A   ++PI   P +AR L K VP+N  IP   ++ VA ++
Sbjct: 334 VVLAKGLDEQALRLRQQAMHAHVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAIL 389


>gi|205352862|ref|YP_002226663.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857072|ref|YP_002243723.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205272643|emb|CAR37553.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206708875|emb|CAR33205.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|309243390|gb|ADO51966.1| SsaU [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|322714480|gb|EFZ06051.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326627934|gb|EGE34277.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 352

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGLLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|167572950|ref|ZP_02365824.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis
           C6786]
          Length = 377

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 158/353 (44%), Gaps = 33/353 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF-----------FFSPGIYS 57
            KTE P++KK+ DA  +G    S E +    +   L Y LF                I  
Sbjct: 3   EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGAHLLQAFEALVDVSIAV 62

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V  D     A+AT R    +  +   L   +L  + LVI          + + + Q  P+
Sbjct: 63  VNDDF----AAATARWTSALGAV---LIRFTLGMAVLVI-------AMTVAAAIAQIGPL 108

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L +  +KPS  +++    +K+++S+ +L  F KS  K+ ++  I    L   Y   L F+
Sbjct: 109 LAVEALKPSLDKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIF-FYLIRQYAPSLQFL 167

Query: 178 SANPHSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
              P   +        ++L      ++ F     + D  +  +    +L MS ++IK E 
Sbjct: 168 ---PLCSVECGLAVSTQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEF 224

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K S GNP IK++++ I R      +    +++T+++ NPTH A+ L Y + E   P ++ 
Sbjct: 225 KNSEGNPEIKHKRREIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIE 284

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            G++ +A  +  +A    +P+ E   LA +L  ++ +   IPP  ++ VA L+
Sbjct: 285 IGRDKLALHIVALAERERVPVVENVPLAHALANRLDVGQRIPPDLFEPVAHLL 337


>gi|91791412|ref|YP_561063.1| type III secretion exporter [Shewanella denitrificans OS217]
 gi|91713414|gb|ABE53340.1| type III secretion exporter [Shewanella denitrificans OS217]
          Length = 352

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 180/355 (50%), Gaps = 22/355 (6%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDL 62
           + ++K+E  S  K+ +A   G    S E + +  +L  L Y   F    +  + SV S  
Sbjct: 2   SDEHKSEQASQYKLNEARKRGQLAKSMELNAWVLVLISLAYFYLFSESLAKELMSVISRY 61

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
             +L S   R     ++ + +   +    + L++P   + ++  I   ++    V +   
Sbjct: 62  LQILGSVDIR-----NNFMLIAFDIFYPLAVLLVPFFSILVVASIVINVLLNGFVFSFEP 116

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISA 179
           + P F++++  +G+K+I+S  NL  F+K  +K+ LV   G ++   + E        I++
Sbjct: 117 LSPKFEKLNPVKGLKKIFSKKNLFEFIKQTIKLFLVALCGYLLFYGVVERLI-----IAS 171

Query: 180 NPH--SILYHAFF--TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             H  S+L  A    T+R +   +LL I  L  LD+ ++   +  ++ MS +E+++E K+
Sbjct: 172 QSHVSSLLGMALSQETLR-LSFYLLLTIFPLIALDVLFTRWDFKKQMMMSHREVREEYKK 230

Query: 236 SYGNPIIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
             G+P IK+++K + +   +  + +     A +II NPTH ++AL++     ++P++VA 
Sbjct: 231 KEGDPQIKSKRKEVQKELAKKLIALGKVKEADVIINNPTHISVALKFDPLTMNSPIVVAS 290

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           G  ++ K +R+IA +H++      SLAR L+KQ+ I   +P  ++  +A +  KI
Sbjct: 291 GSGVLGKFIRRIAVKHSLLQVTNISLARRLYKQLAIGQPLPAEYFDELAPIYRKI 345


>gi|16760489|ref|NP_456106.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141751|ref|NP_805093.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413607|ref|YP_150682.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168233617|ref|ZP_02658675.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168263746|ref|ZP_02685719.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463168|ref|ZP_02697099.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822292|ref|ZP_02834292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194470706|ref|ZP_03076690.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197250158|ref|YP_002146621.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362531|ref|YP_002142168.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|213426013|ref|ZP_03358763.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213613054|ref|ZP_03370880.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647290|ref|ZP_03377343.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289827203|ref|ZP_06545926.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25322219|pir||AF0696 probable type III secretion protein ssaU [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502785|emb|CAD01943.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137379|gb|AAO68942.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56127864|gb|AAV77370.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|194457070|gb|EDX45909.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634165|gb|EDX52517.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094008|emb|CAR59504.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213861|gb|ACH51258.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205332387|gb|EDZ19151.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341285|gb|EDZ28049.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347621|gb|EDZ34252.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|320086100|emb|CBY95874.1| Secretion system apparatus protein ssaU [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 352

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|315301911|ref|ZP_07872923.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596]
 gi|313629719|gb|EFR97840.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596]
          Length = 162

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 91/151 (60%)

Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
            + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++
Sbjct: 1   FLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQ 60

Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
             + +  + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R++A    +P+ 
Sbjct: 61  GSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDEVPMI 120

Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
               LARS++     +  I    YK V +++
Sbjct: 121 TNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 151


>gi|213581364|ref|ZP_03363190.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 338

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG + 
Sbjct: 230 DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDA 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 290 QANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|213854181|ref|ZP_03382713.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 352

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 21/347 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLF----MMFGIGSYLIQRIPVLNLNHV 123
           +    L+ ++    + LT LS +    +   LL      ++  +GS  +Q   V+    +
Sbjct: 55  SITFTLQLVNKPFSYALTQLSHALIESLTSALLFLGAEVIVATVGSVFLQVGVVIASKAI 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
               + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+ 
Sbjct: 115 GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPYC 170

Query: 184 ILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G+
Sbjct: 171 GLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGD 230

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  
Sbjct: 231 PQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQ 290

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 291 ANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|203287732|ref|YP_002222747.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
 gi|201084952|gb|ACH94526.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
          Length = 373

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 176/351 (50%), Gaps = 16/351 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + +TE P+ ++ + A  EG    S E +  SSI   +++ +FFF    ++   +L  +  
Sbjct: 24  EGRTEVPTEQRKQKARREGQVLKSIEIN--SSISLFILFAVFFFMLSYFA--QELMDIFK 79

Query: 68  SATQRKLEDISHIVFLLTHLSLSA-SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               +  E +S  ++ L+   +    R V    ++  + G    ++Q   V+ L  + P 
Sbjct: 80  WQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPIMPK 139

Query: 127 FKRVS--LREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           + R++    + +K  + S++   N  KS +KI ++  I  I L  N    +  IS  P  
Sbjct: 140 WDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSN----IGKISKMPEY 195

Query: 184 ILYHAFFTVRKVLIMILLF----IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L      +  +   I  F    +  L+VLD  +   ++   LKM+K+EIK E K+  G+
Sbjct: 196 SLEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGD 255

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++++R +   R      +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ I
Sbjct: 256 PLLRSRMRERMREISNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEI 315

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
              +++IA E+N+ I E   LAR L+  V IN  IP  +++ V++++ K+Y
Sbjct: 316 VFVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366


>gi|171322350|ref|ZP_02911175.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
 gi|171092322|gb|EDT37690.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
          Length = 360

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 170/348 (48%), Gaps = 20/348 (5%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE PS +K++    +G    S++ +   ++ A +  L    + G   +T  L   + 
Sbjct: 3   EEKTEEPSERKLKKVREKGQIAKSKDVADAVTLAAAIGVL----TAGESMLTGGLSRTIR 58

Query: 68  SATQ-RKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +A      E          H L+ SA+  ++P ++  ++ GI S   Q   ++ L  V P
Sbjct: 59  TALDFVNGERTPQATLSALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITLEPVMP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSI 184
            F  ++   GIK+I+S+ +L+  +K  VK +++  +I   +   +   +     A P   
Sbjct: 119 KFDAINPMAGIKKIFSMKSLLELVKMIVKAVVLACVIWKMMMSLFPLVVASVYEATPQ-- 176

Query: 185 LYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           L    +TV  K+L ++ L +      D   +   +    +M+K+E K E K+S G+P  K
Sbjct: 177 LSRVLWTVLMKLLGVVALVVTVFAAADYKIARMMFMRDNRMTKEEAKRENKESEGDPHTK 236

Query: 244 NRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
             ++ +AR     +  R K+     +A +++ NPTHYA+A+RY   E+  P ++ K  + 
Sbjct: 237 GERRRLAREIATSAPARQKV----GQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDD 292

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A  +R+ A+   +PI   P +AR+L++ V  ++AIP   ++ VA ++
Sbjct: 293 GALALRRHAHALGVPIVGNPPVARALYR-VERDAAIPEELFETVAAIL 339


>gi|284006885|emb|CBA72154.1| type III secretion component protein SctU [Arsenophonus nasoniae]
          Length = 349

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 185/353 (52%), Gaps = 31/353 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL---------FFFSP--GIYS 57
            KTE P++KKI+DA  +G    S+E      + +C+I +L         FF      +++
Sbjct: 4   EKTETPTAKKIKDARKKGQILKSKEI-----VSSCIIVILLSLLLSLSSFFIEHFLSLFA 58

Query: 58  VTSDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
              D  +L   +A  R +  I HI   +    +  + L+I          + S+L Q   
Sbjct: 59  YLQDSSLLDFQTAKARIVPHIWHITINILLPIIIITILII----------VLSHLAQFGF 108

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYFTML 174
           +L+ + +KP  K ++   G K+I+S+  L+ F KS +K+I +G I+   I    N+F  L
Sbjct: 109 LLSPSSLKPDIKHINPIAGAKKIFSLKILLEFFKSLLKVIFIGFIVWFVIKGNINFFFHL 168

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                    I      T  ++ I+ +L +  +++LD    YH +  +LKMSK+EIK E K
Sbjct: 169 PKCGLKCIPIFIGQLLT--QLTIICILGLIIISILDYCLEYHFYIKQLKMSKEEIKKEYK 226

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +  GNP IK R+K + +  + + + +   ++++IITNPTH A+ +RYI+ E   P++  K
Sbjct: 227 EMDGNPEIKGRRKQLHKELLVNNIRKQVKQSSVIITNPTHIAIGIRYIKHETPLPIVTLK 286

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
             + +A+ +++IA + NIPI +   LARSL+ +  I+  IP    + +A++++
Sbjct: 287 QTDALAQLVKRIAIQENIPIIQRIPLARSLYAEGIIDQYIPENTIETMAEVLH 339


>gi|161503484|ref|YP_001570596.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864831|gb|ABX21454.1| hypothetical protein SARI_01560 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 351

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 160/347 (46%), Gaps = 21/347 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  F     I  +   ++  L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALFLYFHFLTEKVILRIIELINFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNHV 123
             +          + LT LS S     +  ++LF+  GI      S  +Q   V+    +
Sbjct: 63  INK-------PFSYALTQLSYSLVD-SLSSVILFLGAGIIISTVASVFLQVGVVIASKAI 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
                 ++     K+I+S++++V   KS +K+I++  I+       Y+ +  F  A P+ 
Sbjct: 115 GFKSDHINPVSNFKQIFSLHSVVELCKSTLKVIILSLILAFFF---YYYVSTF-RALPYC 170

Query: 184 ILYHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L  A    F  ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+
Sbjct: 171 GLACALPVVFCLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGD 230

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R++ +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  
Sbjct: 231 PQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQ 290

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A  +  IA  + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 291 ANYIVNIAERNCIPVVENVDLARSLFFEVERGDKIPETLFEPVAALL 337


>gi|125657194|gb|ABN48682.1| FlhB [Burkholderia pseudomallei]
          Length = 335

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 80/131 (61%)

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           +M+KQE+KDE K + G P +++R + + R   +  + +    A +++ NPTHYA+AL+Y 
Sbjct: 176 RMTKQEVKDEHKNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYD 235

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
               +AP ++AKG + +A  +R+IA EH + +   P LAR+++    +N  IP   Y+AV
Sbjct: 236 TNRAEAPFVIAKGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAV 295

Query: 343 AQLIYKIYHKK 353
           AQ++  +   K
Sbjct: 296 AQVLTYVLQLK 306


>gi|300693811|ref|YP_003749784.1| hypersensitivity response secretion protein hrcu, type III
           secretion exporter [Ralstonia solanacearum PSI07]
 gi|299075848|emb|CBJ35157.1| Hypersensitivity response secretion protein hrcU, Type III
           secretion exporter [Ralstonia solanacearum PSI07]
          Length = 357

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 162/352 (46%), Gaps = 28/352 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+EDA  +G    ++ A L ++ +     LL   +   +       + LA
Sbjct: 3   DEKTEQPTDKKLEDAHKDGET--AKSADLTAAAVLLSGCLLLALTASFFGERWRALLDLA 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                    +  +   ++H +L    + +P   +F +    +   Q   VL+   V+   
Sbjct: 61  LDVDSSRHPVMTLKQTISHFALQLVLMTLPVGFVFALIAWIATWAQTGIVLSFKPVELKM 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVK------------IILVGTIITISLTENYFTMLD 175
             ++   G+KRI+S+ ++++ +K  +K            +IL+  I+  +    Y ++LD
Sbjct: 121 SAINPASGLKRIFSLRSMIDLVKMVIKAAAVAAAIWKLILILMPAIVGAA----YQSVLD 176

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
                           VR +     LF+  L   D G     +    +MSK E+K E K 
Sbjct: 177 IAEIG-------MTLLVRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKN 228

Query: 236 SYGNPIIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           S G+P IK  +K +AR      K  ++ + A  ++ NPTHYA+A+RY+  E   P ++AK
Sbjct: 229 SEGDPHIKGERKKLARELAEDAKPKQSVAGAQAVVVNPTHYAVAIRYVPEEYGLPRIIAK 288

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           G +  A  +R+ A    IPI   P LAR+L++ V +   +P   ++ VA+++
Sbjct: 289 GVDDEALALREEATALGIPIVGNPPLARALYR-VDLYGPVPEPLFETVAEVL 339


>gi|330444474|ref|YP_004377460.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum
           E58]
 gi|328807584|gb|AEB41757.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum
           E58]
          Length = 359

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 18/346 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL--LFFFSPGIYSVTSDLHVLL 66
            KTE  + K++ DA  +G    S++   F S +  ++ +   F+ S   Y        L+
Sbjct: 3   EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMSMAFYLSSFFYQHLGGF--LV 57

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI---PVLNLNHV 123
           ++ TQ  +     +   L +L    + ++   L L +  GI   ++  +   PV +    
Sbjct: 58  STLTQAPINHDPRLA--LYYLKNCLTLILAASLPLLVSVGIIGLIVGFLIVGPVFSTEVF 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP-- 181
           KP  K+ +  E IK+ + +  L+  +KS  KI     I+ + L      +++     P  
Sbjct: 116 KPDIKKFNPIENIKQKFKVKTLIELLKSVFKIFGAALILYVVLKNRVPLIIETAGVAPIV 175

Query: 182 -HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I    F+   K +  I +F   + VLD+ +  H +  +LKM K E+K E K + GNP
Sbjct: 176 TAQIFKQIFY---KAVTSIGIFFVVVAVLDLVYQRHNFSKELKMEKFEVKQEFKDTEGNP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL A
Sbjct: 233 EIKGRRRQIAQEIAYEDPSSQIKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           K++   A ++ IPI     LA  L+ +      IP   Y+A+ +++
Sbjct: 293 KRILAEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338


>gi|327478779|gb|AEA82089.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166]
          Length = 380

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 173/361 (47%), Gaps = 18/361 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57
           MSE ++   KTE  S +K++ + ++G    S++ +   S+LA L+ L      F  G+  
Sbjct: 1   MSEQNSSQEKTEEASEQKLKKSRDDGQVTRSKDVATTVSLLATLLLLKLSAELFLDGMQQ 60

Query: 58  VTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
             S  ++     ++  ++D+  I+   LL  +S+    L+ P L++      G +     
Sbjct: 61  SFSYSYINFQQ-SEIGIDDLQVILTHNLLVFISVLLPLLLTPILVIAFALVPGGW----- 114

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V    +  P F +++   G+ R+    N     KS +KI     ++ I+  + Y+    
Sbjct: 115 -VFASKNFAPKFSKLNPITGLGRMVGAQNWSELAKSLLKI---SALLGIAAWQLYYAAPR 170

Query: 176 FISANPHSI---LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            ++     I   +  AF     + I +LL     + +DI      +  K++M+KQE K+E
Sbjct: 171 LVALQRTDIFNAIGGAFSLTFDLAISLLLVFVLFSFIDIPLQRFFFLKKMRMTKQERKEE 230

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K   G P +K R K + R+  + ++ +    A ++I NPTHYA+ALRY   + + P ++
Sbjct: 231 HKNQEGRPEVKARIKQLQRALAQRQIAKVIKDADVVIVNPTHYAVALRYDPKKAETPFVI 290

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A+G + +A  +RK+A  +   + E P LAR+++    +N  IP   Y AVA ++  I   
Sbjct: 291 ARGVDEMALYIRKMAQANGREVVELPPLARAIYYSTQVNQQIPAPLYTAVAHVLTYILQL 350

Query: 353 K 353
           K
Sbjct: 351 K 351


>gi|238757869|ref|ZP_04619051.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC
           35236]
 gi|238703854|gb|EEP96389.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC
           35236]
          Length = 304

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 134/279 (48%), Gaps = 19/279 (6%)

Query: 78  SHIVFLLTHLSLSASRLVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRV 130
           S+ V ++T    SA      G L+F +FG       I S L Q   ++    +    +R+
Sbjct: 21  SYAVGVMTRALFSA------GGLMFALFGGMLAAATIASVLAQVGFMVASKALGFKAERI 74

Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY---FTMLDFISANPHSILYH 187
           S    +K+I+S+ +L+  +KS +K+IL+  +I + L   Y   F  L +        ++ 
Sbjct: 75  SPVSNLKQIFSLRSLIELIKSCLKVILL-CLIFVYLFRYYAPTFQALPYCDPACAIPVFS 133

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
            F  VR +   +L F   L V D  +  H    + +MSK+++K E K   G+P  K R++
Sbjct: 134 TF--VRWMWYALLTFYVVLGVFDYAFQSHNTLKQQRMSKEDVKQEHKDMEGDPQTKKRRR 191

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R      + +   ++ +++ NPTH A+ L Y   E   P ++ KG +  A+ +  +A
Sbjct: 192 ELQREMQSGSLAQNVRQSAVVVRNPTHIAVCLGYDPVEMPVPTILEKGTDARAEHIVSLA 251

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
              +IP+ E  +LAR LF  V     IP   ++ VA L+
Sbjct: 252 LRESIPVVENIALARQLFHDVKCGEMIPESQFEPVAALL 290


>gi|115379113|ref|ZP_01466237.1| translocation protein in type III secretion [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363896|gb|EAU63007.1| translocation protein in type III secretion [Stigmatella aurantiaca
           DW4/3-1]
          Length = 265

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 1/229 (0%)

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           LN+ HV P+ +R+S   G KR+ S+   V  +K+ +   ++  ++   + E     L  +
Sbjct: 28  LNMEHVAPNLERISPFAGWKRLLSVRAGVEGLKALLVSAVLAVLVWGEVREAGPEALRGV 87

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                  L H    +  +L+ +   +  L   D   +  + +  L MS++E+K E ++S 
Sbjct: 88  EGRGAEGLVHLLDRLEPLLLRLSGCLLLLGGADYALARARHFKDLCMSREEVKREYQESE 147

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P  K ++K++ R   +        +A+ ++ NPTH A+ALRY   E +AP LVAK Q 
Sbjct: 148 GDPRHKAQRKALHRQLAQGGSARGVRKASAVVINPTHIAVALRYDAQECEAPYLVAKAQE 207

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             A  +R  A    IP+  +  LARSL     +   IP   Y+A A ++
Sbjct: 208 AEALALRHEAQRRGIPVVRDVPLARSLIS-YDVGEQIPEELYQAAAAVL 255


>gi|108809999|ref|YP_653915.1| secretion system apparatus protein SsaU [Yersinia pestis Antiqua]
 gi|108813554|ref|YP_649321.1| secretion system apparatus protein SsaU [Yersinia pestis Nepal516]
 gi|145600944|ref|YP_001165020.1| secretion system apparatus protein SsaU [Yersinia pestis Pestoides
           F]
 gi|150260678|ref|ZP_01917406.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|162421928|ref|YP_001608225.1| secretion system apparatus protein SsaU [Yersinia pestis Angola]
 gi|165926775|ref|ZP_02222607.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936397|ref|ZP_02224965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010522|ref|ZP_02231420.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213930|ref|ZP_02239965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402227|ref|ZP_02307700.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167426123|ref|ZP_02317876.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467562|ref|ZP_02332266.1| type III secretion protein, YscU/HrpY family [Yersinia pestis FV-1]
 gi|218927480|ref|YP_002345355.1| secretion system apparatus protein SsaU [Yersinia pestis CO92]
 gi|229836528|ref|ZP_04456694.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|229840136|ref|ZP_04460295.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842217|ref|ZP_04462372.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904044|ref|ZP_04519157.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|270488971|ref|ZP_06206045.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27]
 gi|294502345|ref|YP_003566407.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
 gi|108777202|gb|ABG19721.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
 gi|108781912|gb|ABG15970.1| putative type III secretion apparatus protein [Yersinia pestis
           Antiqua]
 gi|115346091|emb|CAL18959.1| putative type III secretion apparatus protein [Yersinia pestis
           CO92]
 gi|145212640|gb|ABP42047.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
 gi|149290086|gb|EDM40163.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|162354743|gb|ABX88691.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           Angola]
 gi|165915513|gb|EDR34122.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921398|gb|EDR38622.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990612|gb|EDR42913.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204905|gb|EDR49385.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167048408|gb|EDR59816.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054834|gb|EDR64636.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679814|gb|EEO75917.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|229690527|gb|EEO82581.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696502|gb|EEO86549.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706212|gb|EEO92220.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|262364375|gb|ACY60932.1| putative type III secretion apparatus protein [Yersinia pestis
           D182038]
 gi|270337475|gb|EFA48252.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27]
 gi|294352804|gb|ADE63145.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
          Length = 355

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 4   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125
           +          I+ L   L+L+ +R+    + + M  +  +G  LI    +  +  V P 
Sbjct: 60  S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 109

Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                 SFK  R++  +  K+++S+ ++   MKS +K+ ++ T+I   L   Y     ++
Sbjct: 110 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +          F T+   L+  L+      +++D  +  +    +LKMS  E+K E K S
Sbjct: 169 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDS 228

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK +++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG 
Sbjct: 229 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 288

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 289 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338


>gi|269303197|gb|ACZ33297.1| putative Yop translocation protein U [Chlamydophila pneumoniae
           LPCoLN]
          Length = 360

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 161/347 (46%), Gaps = 20/347 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65
            KTE  + K++ DA  +G    S++   F S +  ++ +   FS   +    +   L  +
Sbjct: 3   EKTEKATPKRLRDARKKGQVAKSQD---FPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSM 59

Query: 66  LASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           L+ A  R   D    +F L +   L L+AS   +P L    + G+    +   P  +   
Sbjct: 60  LSQAPTR--HDPVITLFYLKNCLMLILTAS---LPLLGAVAVVGVIVGFLIVGPTFSTEV 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP- 181
            KP  K+ +  E IK+ + I  L+  +KS +KI     I+ I+L      +++    +P 
Sbjct: 115 FKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPI 174

Query: 182 --HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               I    F+   K +  I +F   + VLD+ +  H +  +LKM K E+K E K + GN
Sbjct: 175 ITAQIFKEIFY---KAVTSIGIFFLIVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGN 231

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL 
Sbjct: 232 PEIKGRRRQIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLR 291

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AK++   A ++ IPI     LA  L  +      IP   Y+A+ +++
Sbjct: 292 AKRILDEAEKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEIL 338


>gi|22124447|ref|NP_667870.1| secretion system apparatus protein SsaU [Yersinia pestis KIM 10]
 gi|45440283|ref|NP_991822.1| secretion system apparatus protein SsaU [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167418837|ref|ZP_02310590.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|21957234|gb|AAM84121.1|AE013654_10 putative type III secretion system component [Yersinia pestis KIM
           10]
 gi|45435139|gb|AAS60699.1| putative type III secretion system component [Yersinia pestis
           biovar Microtus str. 91001]
 gi|166962831|gb|EDR58852.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
          Length = 356

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 5   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125
           +          I+ L   L+L+ +R+    + + M  +  +G  LI    +  +  V P 
Sbjct: 61  S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 110

Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                 SFK  R++  +  K+++S+ ++   MKS +K+ ++ T+I   L   Y     ++
Sbjct: 111 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 169

Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +          F T+   L+  L+      +++D  +  +    +LKMS  E+K E K S
Sbjct: 170 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDS 229

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK +++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG 
Sbjct: 230 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 289

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 290 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339


>gi|153846242|ref|ZP_01993844.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|149744950|gb|EDM56290.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
          Length = 150

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 76/118 (64%)

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K++ G P +K R + + R   + +MM    +A +I+TNP HY++ALRY Q  + A
Sbjct: 1   VKDEYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRA 60

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           PV++AKG + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++
Sbjct: 61  PVVIAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVL 118


>gi|330505669|ref|YP_004382538.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
 gi|328919955|gb|AEB60786.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
          Length = 377

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 182/362 (50%), Gaps = 20/362 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---- 56
           MSE  +   KTE  S+ K++ + ++G    S++ S   S++A L  L F  S G++    
Sbjct: 1   MSEQSSGQEKTEEASAHKLKKSKDDGQVARSKDLSTTISLIATLFILKF--SAGLFLEGL 58

Query: 57  SVTSDLHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
           + +  L  +    ++  L+D+  ++   +L  + L A  L+   L++ +    G +    
Sbjct: 59  NDSFRLSYIQFGHSEIGLDDLDTLLGYNMLVFIKLLAPLLLTSLLVVVLSLVPGGW---- 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V +  +  P F +++   G+ RI+S  N    +KS +K++++  +  + +      + 
Sbjct: 115 --VFSAKNFAPKFSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRA---ALP 169

Query: 175 DFISANPHSILYH---AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
           D I+    S+L     AF     + + ++L     + +DI    + +  KL+M+KQE K+
Sbjct: 170 DLIALQRSSVLEAVSAAFDLTFNLTLCLMLIFVVFSFIDIPLQRYFFLKKLRMTKQERKE 229

Query: 232 EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
           E K   G P +K R K + R  ++ ++      A ++I NPTHYA+AL+Y   +  AP +
Sbjct: 230 EHKNQEGRPEVKARIKQLQRQMLQRQISRVIKNADVVIVNPTHYAVALKYDTQKAAAPFV 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +AKG +  A  MR++A +H++ + E P LAR+++    IN  IP   Y AVA ++  I  
Sbjct: 290 LAKGVDETALYMRQMAAKHSLEVVEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQ 349

Query: 352 KK 353
            K
Sbjct: 350 LK 351


>gi|17549085|ref|NP_522425.1| type III secretion system protein HrcU [Ralstonia solanacearum
           GMI1000]
 gi|547676|sp|P35652|HRCU_RALSO RecName: Full=Hypersensitivity response secretion protein hrcU
 gi|6066705|emb|CAB58251.1| HrpN protein [Ralstonia solanacearum]
 gi|17431336|emb|CAD18015.1| hrp conserved hrcu transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|1097284|prf||2113360K hrpN gene
          Length = 357

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 161/344 (46%), Gaps = 12/344 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+EDA  +G    ++ A L ++ +     LL   +  ++       + LA
Sbjct: 3   DEKTEQPTDKKLEDAHRDGET--AKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLA 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                    +  +   ++H +L    + +P   +F +    +   Q   VL+   V+   
Sbjct: 61  LDVDSSRHPLMTLKQTISHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELKM 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             ++   G+KRI+S+ ++++ +K  +K + V   +   +      M   + A   S++  
Sbjct: 121 SAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLI---LILMPSIVGAAYQSVMDI 177

Query: 188 A----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           A       VR +     LF+  L   D G     +    +MSK E+K E K S G+P IK
Sbjct: 178 AEIGMTLLVRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236

Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  
Sbjct: 237 GERKKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALA 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R+ A    IPI   P LARSL++ V +   +P   ++ VA+++
Sbjct: 297 LREEAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVL 339


>gi|51594685|ref|YP_068876.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893688|ref|YP_001870800.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587967|emb|CAH19570.1| putative type III secretion apparatus protein EscU/SsaU/YscU
           [Yersinia pseudotuberculosis IP 32953]
 gi|186696714|gb|ACC87343.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 355

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 4   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125
           +          I+ L   L+L+ +R+    + + M  +  +G  LI    +  +  V P 
Sbjct: 60  S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 109

Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                 SFK  R++  +  K+++S+ ++   MKS +K+ ++ T+I   L   Y     ++
Sbjct: 110 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +          F T+   L+  L+      +++D  +  +    +LKMS  E+K E K S
Sbjct: 169 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDS 228

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK +++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG 
Sbjct: 229 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 288

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 289 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338


>gi|15618242|ref|NP_224527.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15835857|ref|NP_300381.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752716|ref|NP_444983.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33241667|ref|NP_876608.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4376600|gb|AAD18471.1| Yop proteins translocation protein U [Chlamydophila pneumoniae
           CWL029]
 gi|6672052|dbj|BAA88663.1| Yop translocation protein U [Chlamydophila pneumoniae]
 gi|7189359|gb|AAF38277.1| type III secretion inner membrane protein SctU [Chlamydophila
           pneumoniae AR39]
 gi|8978696|dbj|BAA98532.1| Yop translocation protein U [Chlamydophila pneumoniae J138]
 gi|33236176|gb|AAP98265.1| YopU [Chlamydophila pneumoniae TW-183]
          Length = 360

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 161/347 (46%), Gaps = 20/347 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65
            KTE  + K++ DA  +G    S++   F S +  ++ +   FS   +    +   L  +
Sbjct: 3   EKTEKATPKRLRDARKKGQVAKSQD---FPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSM 59

Query: 66  LASATQRKLEDISHIVFLLTH---LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           L+ A  R   D    +F L +   L L+AS   +P L    + G+    +   P  +   
Sbjct: 60  LSQAPTR--HDPVITLFYLKNCLMLILTAS---LPLLGAVAVVGVIVGFLIVGPTFSTEV 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP- 181
            KP  K+ +  E IK+ + I  L+  +KS +KI     I+ I+L      +++    +P 
Sbjct: 115 FKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPI 174

Query: 182 --HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               I    F+   K +  I +F   + +LD+ +  H +  +LKM K E+K E K + GN
Sbjct: 175 ITAQIFKEIFY---KAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGN 231

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL 
Sbjct: 232 PEIKGRRRQIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLR 291

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AK++   A ++ IPI     LA  L  +      IP   Y+A+ +++
Sbjct: 292 AKRILDEAEKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEIL 338


>gi|299069231|emb|CBJ40491.1| Hypersensitivity response secretion protein hrcU, Type III
           secretion exporter [Ralstonia solanacearum CMR15]
          Length = 354

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 164/345 (47%), Gaps = 14/345 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+EDA  +G    ++ A L ++ +     LL   +  ++       + +A
Sbjct: 3   DEKTEQPTDKKLEDAHRDGET--AKSADLTAAAVLLSGCLLLALTASVFGERWRALLDIA 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                    +  +   + H +L    + +P   +F +    +   Q   VL+   V+   
Sbjct: 61  LDVDSSRHPVMTLKQTIGHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELKM 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             ++   G+KRI+S+ ++++ +K  +K + V   +   +      M   + A   S++  
Sbjct: 121 NAINPASGLKRIFSVRSMIDLIKMIIKGVAVAAAVWKLI---LILMPAIVGAAYQSVMDI 177

Query: 188 AFFTVRKVLIMIL-----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           A   +  +L+ +L     LF+  L  +D G     +    +MSK E+K E K S G+P I
Sbjct: 178 AEIGI-TLLVRLLAAGGGLFL-ILGAVDFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHI 235

Query: 243 KNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           K  +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A 
Sbjct: 236 KGERKKLARELAEEAKPKQSVAGAQALVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEAL 295

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +R+ A    IPI   P LARSL++ V +   +P   ++ VA+++
Sbjct: 296 ALREEAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVL 339


>gi|312171082|emb|CBX79341.1| Type III secretion protein HrcU [Erwinia amylovora ATCC BAA-2158]
          Length = 360

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 27/357 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62

Query: 69  ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             Q     L ++  S I+ + T   L+ +   I  LL      IG + IQ  P+     +
Sbjct: 63  IGQPFELALSEVVSSAIILVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P F R++     K+++S+  L   + S VK + + TI  + LT +    L+ +S   + 
Sbjct: 115 QPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPD----LESLSRLAYG 170

Query: 184 ILYHAFFTVRKVLIMI----LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L   +  V  +LI +    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+
Sbjct: 171 DLDSFWPAVETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGD 230

Query: 240 PIIKNRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           P +K  + ++A   +        S+    A +++ NPTHYA+AL Y       P ++ KG
Sbjct: 231 PHMKGHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKG 290

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           ++  AK++   A + NIP+     LAR+L++       IP    +AVAQ +Y++  +
Sbjct: 291 EDQQAKELIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345


>gi|270487694|ref|ZP_06204768.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM
           D27]
 gi|270336198|gb|EFA46975.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM
           D27]
          Length = 161

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 81/125 (64%)

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           +KM+KQE+K E K + GNP IK+R + + R     ++ +    A +IITNPTH+++AL+Y
Sbjct: 1   MKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKY 60

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
              +  AP +VAKG++ IA  +R IA +H I I E P LAR+++    +N  IP   Y+A
Sbjct: 61  APEKASAPYIVAKGKDDIALYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRA 120

Query: 342 VAQLI 346
           +AQ++
Sbjct: 121 IAQVL 125


>gi|292487013|ref|YP_003529883.1| type III secretion protein HrcU [Erwinia amylovora CFBP1430]
 gi|292900602|ref|YP_003539971.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|1181176|gb|AAB06008.1| HrcU [Erwinia amylovora]
 gi|291200450|emb|CBJ47579.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552430|emb|CBA19475.1| Type III secretion protein HrcU [Erwinia amylovora CFBP1430]
          Length = 360

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 27/357 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62

Query: 69  ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             Q     L ++  S I+ + T   L+ +   I  LL      IG + IQ  P+     +
Sbjct: 63  IGQPFELALSEVVSSAIILVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P F R++     K+++S+  L   + S VK + + TI  + LT +    L+ +S   + 
Sbjct: 115 QPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPD----LESLSRLAYG 170

Query: 184 ILYHAFFTVRKVLIMI----LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L   +  V  +LI +    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+
Sbjct: 171 DLDSFWPAVETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGD 230

Query: 240 PIIKNRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           P +K  + ++A   +        S+    A +++ NPTHYA+AL Y       P ++ KG
Sbjct: 231 PHMKGHRHALAHELLNQPATAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKG 290

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           ++  AK++   A + NIP+     LAR+L++       IP    +AVAQ +Y++  +
Sbjct: 291 EDQQAKELIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345


>gi|153948750|ref|YP_001402765.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960245|gb|ABS47706.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 356

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 5   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125
           +          I+ L   L+L+ +R+    + + M  +  +G  LI    +  +  V P 
Sbjct: 61  S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 110

Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                 SFK  R++  +  K+++S+ ++   MKS +K+ ++ T+I   L   Y     ++
Sbjct: 111 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLMQYAPSFGYL 169

Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +          F T+   L+  L+      +++D  +  +    +LKMS  E+K E K S
Sbjct: 170 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDS 229

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK +++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG 
Sbjct: 230 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGH 289

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 290 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339


>gi|269138239|ref|YP_003294939.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
 gi|61743012|gb|AAX55232.1| EsaU [Edwardsiella tarda]
 gi|267983899|gb|ACY83728.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
 gi|304558282|gb|ADM40946.1| EsaU [Edwardsiella tarda FL6-60]
          Length = 352

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 154/341 (45%), Gaps = 9/341 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++K++ DA  EG    S++ S  +  LA ++  +    P +Y+          +
Sbjct: 3   EKTEQPTAKRLRDAREEGQVAKSQDISA-TVQLAVILLWMVTEGPTLYAAIGGFIDATLA 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L D   I  L    +    R V     L  +  I + L++   +     + PS +
Sbjct: 62  TLNLPLPD--AIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K++ S+  L    K  +KI+++G   T  +     +    + A+  + L+  
Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLW-- 177

Query: 189 FFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
             T +  L M   +LL  A   V+D    Y     +L MS ++IK E K + G+P IK R
Sbjct: 178 -VTSKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++ + R      + ++ S A++++ NPTH A+ LRY + E   P +V  G+   A+ +  
Sbjct: 237 RRELHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVA 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    IP+ E   LAR+L         +P   + AVAQL+
Sbjct: 297 LAEARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337


>gi|310766415|gb|ADP11365.1| HrcU [Erwinia sp. Ejp617]
          Length = 365

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 27/357 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 8   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 67

Query: 69  ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             Q     L ++  S +V + T   L+ +   I  LL      IG + IQ  P+     +
Sbjct: 68  IGQPFELALSEVVSSALVLVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 119

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP F R++     K+++S+  L   + S VK + + TI  + LT +    L+ ++   + 
Sbjct: 120 KPDFNRLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPD----LESLARLAYG 175

Query: 184 ILYHAFFTVRKVLIMI----LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            L   +  V  +LI +    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+
Sbjct: 176 DLDSFWPAVETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGD 235

Query: 240 PIIKNRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           P +K  + ++A   +   +    S+    A +++ NPTHYA+AL Y       P ++ KG
Sbjct: 236 PHMKGHRHALAHELLNQPVAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKG 295

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           ++  AK +   A + NIP+     LAR+L++       IP    +AVAQ +Y++  +
Sbjct: 296 EDGEAKALIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 350


>gi|170026112|ref|YP_001722617.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis YPIII]
 gi|169752646|gb|ACA70164.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis YPIII]
          Length = 355

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 4   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM--MFGIGSYLIQRIPVLNLNHVKP- 125
           +          I+ L   L+L+ +R+    + + M  +  +G  LI    +  +  V P 
Sbjct: 60  S----------IIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPL 109

Query: 126 ------SFK--RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                 SFK  R++  +  K+++S+ ++   MKS +K+ ++ T+I   L   Y     ++
Sbjct: 110 LATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVL-TLIFGYLLIQYAPSFGYL 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           +          F T+   L+  L+      +++D  +  +    +LKMS  E+K E K S
Sbjct: 169 THCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDS 228

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK +++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG 
Sbjct: 229 NGDPHIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGH 288

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  A  +  +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 289 DEQAALIVSLAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338


>gi|55981991|gb|AAV69421.1| EsaU [Edwardsiella tarda]
          Length = 352

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 9/341 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++K++ DA  EG    S++ S  +  LA ++  +    P +Y+          +
Sbjct: 3   EKTEQPTAKRLRDAREEGQVAKSQDISA-TVQLAVILLWMVTEGPTLYAAIGGFIDATLA 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L D   I  L    +    R V     L  +  I + L++   +     + PS +
Sbjct: 62  TLNLPLPD--AIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K++ S+  L    K  +KI+++G   T  +     +    + A+  + L+  
Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGPTFTYFIRGYAASFAQLVRADAEAGLW-- 177

Query: 189 FFTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
             T +  L M   +LL  A   ++D    Y     +L MS ++IK E K + G+P IK R
Sbjct: 178 -VTSKMALWMWGILLLLTALFAIVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++ + R      + ++ S A++++ NPTH A+ LRY + E   P +V  G+   A+ +  
Sbjct: 237 RRELHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVA 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    IP+ E   LAR+L         +P   + AVAQL+
Sbjct: 297 LAEARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337


>gi|332159965|ref|YP_004296542.1| type III secretion protein, YscU/HrpY family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607483|emb|CBY28981.1| type III secretion inner membrane protein
           (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar
           export components) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664195|gb|ADZ40839.1| Type III secretion protein, YscU/HrpY family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862410|emb|CBX72569.1| secretion system apparatus protein ssaU [Yersinia enterocolitica
           W22703]
          Length = 358

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 164/344 (47%), Gaps = 23/344 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P++K++ +A  +G    S E    +S +  ++ + +FF  G  ++   +  L+ S
Sbjct: 7   EKNEKPTAKRLREAREKGQVIKSVE---ITSGMQLVVLVAYFFLVG-NTIIDQIGALIRS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF- 127
              +  +  +   F L  +    +      +L+ ++  +G  LI    +  +  V P F 
Sbjct: 63  TINQLQQPFT---FALARIGSECT-----AVLIHIVGILGGALILMTIIAGIAQVGPLFA 114

Query: 128 -KRVSLR-------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            K V+ +       +  K+++S+ +L   +KS +K+ ++ T+I   L   Y T   +++ 
Sbjct: 115 TKAVAFKSEHINPIDNAKQLFSLRSLFELIKSLLKVGVL-TLIFGYLLAQYATSFGYLAY 173

Query: 180 NPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              S     F T+   L+  L+      ++LD  + ++    +LKMS +E+K E K S G
Sbjct: 174 CGSSCAIPVFGTLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDG 233

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK +++ + +        +   R+T I+ NPTH+A+ L Y   +   P+++ KG+  
Sbjct: 234 DPHIKQKRRQLQQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGE 293

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
            A  + K+A +  IPI E  +LAR+L + V     IP   ++ V
Sbjct: 294 RAALIIKLAEQQGIPIVENIALARALHRDVVCGDTIPETLFEPV 337


>gi|46446384|ref|YP_007749.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400025|emb|CAF23474.1| putative type III secretion pathway protein sctU [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 357

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 135/255 (52%), Gaps = 7/255 (2%)

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           IP + L  + G+    +   PV      K   K+ +  + +K  + +  LV  +KS +KI
Sbjct: 88  IPTMALVALVGVTITFLTVGPVFAPEVFKFDIKKFNPVDNLKAKFKLKTLVELLKSVIKI 147

Query: 156 ILVGTIITISLTENYFTMLDFISANPHS---ILYHAFFTVRKVLIMILLFIATLTVLDIG 212
            +   +I   +  +   ++  +S  P S   I++HAF    +V++ + LF   + V D  
Sbjct: 148 SIASYLIYKVMYNSIPVLIQTVSM-PISGALIVFHAFLV--EVVLKVGLFFIVVAVADFI 204

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITN 271
           +    +  ++ M K E+K E K S G+P IK +++ IA+    +        RA  ++TN
Sbjct: 205 YQKKTFAKEMMMEKFEVKQEYKNSEGDPHIKGKRRQIAQEIAYQEGPTGGVKRAQAVVTN 264

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+A+ Y +  + AP ++A G++++A+++ KIA +++IP+    +LA  L++Q  I 
Sbjct: 265 PTHLAIAIGYERHMDAAPYILAMGKDVLAERIVKIAEKNDIPVLRNITLAHILWEQGEIY 324

Query: 332 SAIPPVFYKAVAQLI 346
             +P   Y+A+A+++
Sbjct: 325 EYVPEDTYEALAEIM 339


>gi|307131233|ref|YP_003883249.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
 gi|306528762|gb|ADM98692.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
          Length = 359

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 168/354 (47%), Gaps = 21/354 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A L  +L     G+    S L  L+  
Sbjct: 3   EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGM----SKLQALMQL 58

Query: 69  ATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              R  +   H         LSL  +  ++   +  +M  +G + IQ  P+  +  +K  
Sbjct: 59  PLSRITDPFGHAADEIFSEALSLLTTFCLLTISVALLMRLVGGW-IQYGPLFAVEALKID 117

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F R++    IK+++++  L + + + +K + +G +  + +      +++    +  +   
Sbjct: 118 FNRLNPINQIKQMFTMRKLTDMLTNILKAVTIGLVFWLVVMPQLEWLVELAYGDLTTFWK 177

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ V    L  +  L VLD G   + +  + +MS ++I++E K S G+P +K  +
Sbjct: 178 GVENVLKSVARTTLSALLALGVLDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHR 237

Query: 247 KSIARS--------RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           KS+A+         R++ K+ +A     +++ NPTHYA+AL Y   +   P ++ KG++ 
Sbjct: 238 KSVAQEILNEPASPRVKPKVEDAD----LLLVNPTHYAVALFYRPGKTPLPRILLKGEDD 293

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            AK +   A++  +P+     LAR+L++ +P    IP    + VAQ +YK+  +
Sbjct: 294 QAKALIARAHQAGVPVIRFIWLARTLYR-IPEGHYIPRDTLQPVAQ-VYKVLRQ 345


>gi|293416105|ref|ZP_06658745.1| type III secretion protein SctU [Escherichia coli B185]
 gi|291432294|gb|EFF05276.1| type III secretion protein SctU [Escherichia coli B185]
          Length = 370

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 148/317 (46%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          +     + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGFGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 CHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|301027459|ref|ZP_07190796.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           69-1]
 gi|300394967|gb|EFJ78505.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           69-1]
          Length = 370

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  T +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWTNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|116515090|ref|YP_802719.1| hypothetical protein BCc_150 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256944|gb|ABJ90626.1| type III protein export, membrane component [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 371

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 113/202 (55%)

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           ++ F  SF KIILV  +  I +   YF    F S +  S ++  +  V + + ++L+   
Sbjct: 143 IIEFFFSFFKIILVFFVSFIFVKTMYFKKKYFYSYSFFSNIFLGYKFVYRFISLLLMIFL 202

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
            + ++D    Y + ++ LKM+ QEIKDE K+  GNPIIK R + + +  +R  +     +
Sbjct: 203 IIAIIDSSIKYFKHFNNLKMTIQEIKDEQKELDGNPIIKQRIRFLMKQTLRKSVFSQVIK 262

Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           + +II +  ++A+A++Y    N  P++ AKG   +A ++ KIA E+NIPIF   S+A+ L
Sbjct: 263 SNVIIYDSVNFAVAIQYNIHLNSTPIISAKGSGKVALRIIKIAEENNIPIFFSNSIAKYL 322

Query: 325 FKQVPINSAIPPVFYKAVAQLI 346
           +    I + I    + ++A+++
Sbjct: 323 YNNFFIGNNISVNLHYSIAKIL 344


>gi|238899254|ref|YP_002924937.1| type III secretion system apparatus protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467015|gb|ACQ68789.1| type III secretion system apparatus protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 352

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K+I+++  +G    S E +  + +   LIY      P +     +L  LL +
Sbjct: 3   EKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYF-SLVGPNLV----NLMGLLIT 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLL---------LFMMFGIGSYLIQRIPVLN 119
           ++ +KL+    I  L     +++  L I G+L         L +M  +G  L  +     
Sbjct: 58  SSIKKLDKPIGIAVLDLTSEIASVFLQIMGVLGGGLALATILVVMSQVGPLLAIKAIGFK 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             H+ P           K + S+ +L    KS  K+ILV  I    L E Y     ++S 
Sbjct: 118 GQHINPI-------SNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLRE-YAPTFGYLSY 169

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                 +  F T+ + L+  LL    +  +LD  + ++    K+KMS++EIK E K + G
Sbjct: 170 CGTHCAFPIFGTLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDG 229

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++++ + +      +      +T +I NPTH+A+ L Y   E   P+++ KG+  
Sbjct: 230 DPEIKSKRRELQQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGT 289

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A+ + K+A + ++P+ E   LA+ L  +V  +  IP   ++ VA ++
Sbjct: 290 RAQTIIKLAEKFDVPVVENVRLAQMLHNEVNCDEIIPEHLFEPVAAIL 337


>gi|12083752|dbj|BAB20911.1| putative HrpN [Acidovorax avenae subsp. avenae]
          Length = 214

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 1/197 (0%)

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
            F KS +K ++ G ++   +T     ++  +   P +    A+  + K+     L    +
Sbjct: 1   EFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIAWSALLKLFSFAFLVFLVI 60

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
             LD G  +  +    +MSK ++K E K S G+P +K   KS+          E    AT
Sbjct: 61  GPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKSLREEMATSPPQERVPGAT 120

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +++TNPTHYA+ALRY       P++VAKG +  A  +R +A  H+IP+   P LAR+L K
Sbjct: 121 VVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHK 180

Query: 327 QVPINSAIPPVFYKAVA 343
            +P++  IP   ++AV+
Sbjct: 181 -LPLDQPIPEELFEAVS 196


>gi|219566954|dbj|BAH04985.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
          Length = 357

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 161/344 (46%), Gaps = 12/344 (3%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE P+ KK+EDA  +G    ++ A L ++ +     LL   +  ++       + LA
Sbjct: 3   DEKTEQPTDKKLEDAHRDGET--AKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLA 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                    +  +   +++ +L    + +P   +F +    +   Q   VL+   V+   
Sbjct: 61  LDVDSSRHPVMTLKQTISYFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELKM 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             ++   G+KRI+S+ ++++ +K  +K + V   +   +      M   + A   S++  
Sbjct: 121 SAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLI---LILMPSIVGAAYQSVMDI 177

Query: 188 A----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           A       VR +     LF+  L   D G     +    +MSK E+K E K S G+P IK
Sbjct: 178 AEIGMTLLVRLLAAGGGLFL-ILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236

Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  
Sbjct: 237 GERKKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALA 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R+ A    IPI   P LARSL++ V +   +P   ++ VA+++
Sbjct: 297 LREEAAALGIPIVGNPPLARSLYR-VDLYGPVPESLFETVAEVL 339


>gi|331654348|ref|ZP_08355348.1| surface presentation of antigens protein SpaS [Escherichia coli
           M718]
 gi|331047730|gb|EGI19807.1| surface presentation of antigens protein SpaS [Escherichia coli
           M718]
          Length = 370

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|323966652|gb|EGB62084.1| YscU/HrpY family protein type III secretion protein [Escherichia
           coli M863]
 gi|323978521|gb|EGB73603.1| YscU/HrpY family protein type III secretion protein [Escherichia
           coli TW10509]
 gi|327251613|gb|EGE63299.1| surface presentation of antigens protein spaS [Escherichia coli
           STEC_7v]
          Length = 370

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|227328488|ref|ZP_03832512.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 359

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 168/358 (46%), Gaps = 28/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE P+ KK+EDA  +G    S++     +   +L C++ L         S    L  L
Sbjct: 3   EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55

Query: 66  LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +    QR     + +   + H +  L+ +  ++   +  ++  +G +L Q  P+     +
Sbjct: 56  VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWL-QYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K    R++     K+++S+  LV  + + +K +++GT+    +      +++    + H 
Sbjct: 115 KLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   + ++    L  +  L+VLD G   + +  + +MS +++++E K S G+P +K
Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSVLDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234

Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294
             +KS+A     H++M   A  R       A +++ NPTHYA+ L Y   +   P ++ K
Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           G+N  A+ +   A + +IP+     L R+L++  P    IP    +AVAQ +Y++  +
Sbjct: 290 GENQAARDLIAQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRVLRQ 346


>gi|300936205|ref|ZP_07151141.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           21-1]
 gi|300458662|gb|EFK22155.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           21-1]
          Length = 370

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + I+     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|284922800|emb|CBG35888.1| type III secretion system protein [Escherichia coli 042]
          Length = 370

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPMPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|188532663|ref|YP_001906460.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|259909721|ref|YP_002650077.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcU protein [Erwinia pyrifoliae Ep1/96]
 gi|188027705|emb|CAO95558.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|224965343|emb|CAX56875.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcU protein [Erwinia pyrifoliae Ep1/96]
 gi|283479807|emb|CAY75723.1| Type III secretion protein HrcU [Erwinia pyrifoliae DSM 12163]
          Length = 360

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 19/353 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGLVETVLALDDVGMQKLQALMRLPLAR 62

Query: 69  ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             Q     L ++  S +V + T   L+ +   I  LL      IG + IQ  P+     +
Sbjct: 63  IGQPFELALSEVVSSALVLVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP F R++     K+++S+  L     + VK   + TI  + LT +  ++      +  S
Sbjct: 115 KPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLARLAYGDLDS 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   + +V    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+P +K
Sbjct: 175 FWPAVEVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMK 234

Query: 244 NRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             + ++A   +        S+    A +++ NPTHYA+AL Y       P ++ KG++  
Sbjct: 235 GHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGE 294

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AK +   A + NIP+     LAR+L++       IP    +AVAQ +Y++  +
Sbjct: 295 AKALIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345


>gi|330862333|emb|CBX72493.1| hypothetical protein YEW_GP28240 [Yersinia enterocolitica W22703]
          Length = 225

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 80/126 (63%)

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           K+KM+KQE+K E K + GNP IK R + + R     ++ +    A +IITNPTH+++AL+
Sbjct: 64  KMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALK 123

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y   +  AP ++AKG++ IA  +R +A  ++I I E P LAR+++    +N  +P   Y+
Sbjct: 124 YAPEKASAPYIIAKGKDDIALYIRTVAKNNDIEIVEFPPLARAIYHTTKVNQQVPAQLYR 183

Query: 341 AVAQLI 346
           A AQ++
Sbjct: 184 ATAQVL 189


>gi|15803385|ref|NP_289418.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 EDL933]
 gi|15832975|ref|NP_311748.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747673|ref|ZP_02772695.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753787|ref|ZP_02778794.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759977|ref|ZP_02784984.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766842|ref|ZP_02791849.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775726|ref|ZP_02800733.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778863|ref|ZP_02803870.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168799982|ref|ZP_02824989.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195936469|ref|ZP_03081851.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806601|ref|ZP_03248938.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813845|ref|ZP_03255174.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818835|ref|ZP_03259155.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399671|ref|YP_002272329.1| hypothetical protein ECH74115_4137 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327346|ref|ZP_03443429.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794804|ref|YP_003079641.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. TW14359]
 gi|12517360|gb|AAG57977.1|AE005514_14 putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. EDL933]
 gi|13363193|dbj|BAB37144.1| type III secretion protein EprS [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768810|gb|EDU32654.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017892|gb|EDU56014.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003231|gb|EDU72217.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358704|gb|EDU77123.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363851|gb|EDU82270.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369301|gb|EDU87717.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377676|gb|EDU96092.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208726402|gb|EDZ76003.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735122|gb|EDZ83809.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738958|gb|EDZ86640.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161071|gb|ACI38504.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217319713|gb|EEC28138.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594204|gb|ACT73565.1| putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. TW14359]
 gi|320189195|gb|EFW63854.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. EC1212]
 gi|326339064|gb|EGD62879.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. 1044]
 gi|326343055|gb|EGD66823.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. 1125]
          Length = 373

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|167573406|ref|ZP_02366280.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 366

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 174/353 (49%), Gaps = 30/353 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE PS KK++    +G    S++ +   ++ A +         G+ +    +     
Sbjct: 3   EEKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAI---------GVLTAGESMLGGGL 53

Query: 68  SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           S   R   D  H        +  L  L+ SA+ +++P +   ++ G+ S   Q   ++ L
Sbjct: 54  SRVMRTALDFVHGERTPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISA 179
             V P F  ++   GIKRI+S+ +L+  +K  VK +++  ++   +T  +   +     A
Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173

Query: 180 NPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            P   L    +TV  K+L ++++ ++ L   D   +   +  + +M+K+E K E K+S G
Sbjct: 174 TPQ--LSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEG 231

Query: 239 NPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           +P  K  ++ +AR     +  R K+     +A +++ NPTHYA+A+RY   E+  P ++ 
Sbjct: 232 DPHTKGERRRLAREIATSAAPRQKV----GQANVLVVNPTHYAVAIRYAPDEHPLPRVIE 287

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           K  +  A  +R+ A+   +PI   P +AR+L++ +  ++AIP   ++ VA ++
Sbjct: 288 KAVDDGALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAIL 339


>gi|167566304|ref|ZP_02359220.1| type III secretion system protein [Burkholderia oklahomensis EO147]
          Length = 372

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 174/353 (49%), Gaps = 30/353 (8%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE PS KK++    +G    S++ +   ++ A +         G+ +    +     
Sbjct: 3   EEKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAI---------GVLTAGESMLGGGL 53

Query: 68  SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           S   R   D  H        +  L  L+ SA+ +++P +   ++ G+ S   Q   ++ L
Sbjct: 54  SRVMRTALDFVHGERTPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISA 179
             V P F  ++   GIKRI+S+ +L+  +K  VK +++  ++   +T  +   +     A
Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173

Query: 180 NPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            P   L    +TV  K+L ++++ ++ L   D   +   +  + +M+K+E K E K+S G
Sbjct: 174 TPQ--LSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEG 231

Query: 239 NPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           +P  K  ++ +AR     +  R K+     +A +++ NPTHYA+A+RY   E+  P ++ 
Sbjct: 232 DPHTKGERRRLAREIATSAAPRQKV----GQANVLVVNPTHYAVAIRYAPDEHPLPRVIE 287

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           K  +  A  +R+ A+   +PI   P +AR+L++ +  ++AIP   ++ VA ++
Sbjct: 288 KAVDDGALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAIL 339


>gi|76152319|gb|ABA39820.1| HrcU [Erwinia pyrifoliae]
          Length = 360

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 19/353 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMRLPLAR 62

Query: 69  ATQR---KLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             Q     L ++  S +V + T   L+ +   I  LL      IG + IQ  P+     +
Sbjct: 63  IGQPFELALSEVVSSALVLVATFCGLTVA---IAALLRI----IGGW-IQYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP F R++     K+++S+  L     + VK   + TI  + LT +  ++      +  S
Sbjct: 115 KPDFNRLNPINQFKQMFSVKKLSEMFNNIVKAAAICTIFYLVLTPDLESLARLAYGDLDS 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   + +V    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+P +K
Sbjct: 175 FWPAVEVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMK 234

Query: 244 NRQKSIARSRIRHKMMEATSR----ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             + ++A   +        S+    A +++ NPTHYA+AL Y       P ++ KG++  
Sbjct: 235 GHRHALAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGE 294

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AK +   A + NIP+     LAR+L++       IP    +AVAQ +Y++  +
Sbjct: 295 AKALIARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQ-VYRVLRQ 345


>gi|251789490|ref|YP_003004211.1| YscU/HrpY family type III secretion protein [Dickeya zeae Ech1591]
 gi|247538111|gb|ACT06732.1| type III secretion protein, YscU/HrpY family [Dickeya zeae Ech1591]
          Length = 361

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 168/354 (47%), Gaps = 21/354 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A L  +L     G+    S L  L+  
Sbjct: 3   EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGM----SKLQALMQL 58

Query: 69  ATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              R  +   H         L+L A+  ++   +  +M  +G + IQ  P+  +  +K  
Sbjct: 59  PLSRISDPFGHAADEVFSEALALLATFCLLTISVALLMRIVGGW-IQYGPLFAVEALKLD 117

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F R++    IK+++++  L + + + +K   +G +  + +T     +++    +  +   
Sbjct: 118 FNRLNPINQIKQMFTMRKLTDMLTNLLKATTIGLVFWLVVTPQLEWLVELAYGDLTAFWK 177

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ V    L  +  L V D G   + +  + +MS ++I++E K S G+P +K  +
Sbjct: 178 GVENVLKSVSRTTLSALLALGVFDFGLQKYYFLKQQRMSHEDIRNEYKNSEGDPHMKGHR 237

Query: 247 KSIARS--------RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           KS+A+         R++ K+ +A     +++ NPTHYA+AL Y   +   P ++ KG++ 
Sbjct: 238 KSVAQEILNEPASPRVKPKVEDAD----LLLVNPTHYAVALFYRPGKTPLPRILLKGEDD 293

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A+ +   A++  +P+     LAR+L++ VP    IP    + VAQ +YK+  +
Sbjct: 294 HARALIARAHQAGVPVIRFIWLARTLYR-VPEGHYIPRDTLQPVAQ-VYKVLRQ 345


>gi|170737797|ref|YP_001779057.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
 gi|169819985|gb|ACA94567.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
          Length = 343

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 169/348 (48%), Gaps = 24/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSI---LACLIYLLFFFSPGIYSVTSDL 62
            K + P++K++ +A  +G+ P S E   ++ F  +   LA  I  LF     ++ +  D 
Sbjct: 3   EKDQKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGALFARVQALFRLVFD- 61

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            V  A  + R    I         LS   +++V  GL   ++ G     +Q   V+  + 
Sbjct: 62  AVGAADPSARLAALIDGAARDWATLS---AQIVAAGLQAGLLAG----FVQVGGVMAWSR 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      P 
Sbjct: 115 LVPQLSRLNPAEGMKNLWSLRNLVNLAKMLMKTALLVATLGWLIVESLDPSVQSGFTRPA 174

Query: 183 SILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           SIL      + K+L+++  + A     + ++DI    H++  K+KMS  E++ E K+  G
Sbjct: 175 SILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEG 230

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P I+ +++ +AR      + +    A++++ +P   A+AL Y       P ++A+G+  
Sbjct: 231 DPHIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMGSLPWVLARGEGD 288

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A+++ ++A +   P      LA++L++  P N  I P  ++AVAQL+
Sbjct: 289 AAERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLL 336


>gi|166154312|ref|YP_001654430.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|166155187|ref|YP_001653442.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335563|ref|ZP_07223807.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930300|emb|CAP03786.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis 434/Bu]
 gi|165931175|emb|CAP06740.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 360

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 14/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65
            KTE  + K++ DA  +G    S++   F S +  ++ +   FS   +    + S L  +
Sbjct: 3   EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFLTFSLASFFAEHLGSFLVSI 59

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHV 123
             +A Q    D    ++ L +  +    + +P  G + F+   IG  ++   P  +    
Sbjct: 60  FKTAPQN--HDPHLAIYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVG--PTFSTEVF 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP  K+ +  + +K+ + +   +  +KS  KI     I+ I L +N   ++   +  P  
Sbjct: 116 KPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGVPPL 174

Query: 184 ILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +    F  +  K +  I LF   + V+D+ +  H +  +LKM K E+K E K + GNP I
Sbjct: 175 VTAQVFKEILYKAVTSIGLFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK+
Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKR 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +   A ++ +PI     LA  L  +      IP   Y+AV +++
Sbjct: 295 IIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338


>gi|254254348|ref|ZP_04947665.1| Type III secretory pathway component EscU [Burkholderia dolosa
           AUO158]
 gi|124898993|gb|EAY70836.1| Type III secretory pathway component EscU [Burkholderia dolosa
           AUO158]
          Length = 343

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 171/358 (47%), Gaps = 44/358 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52
            K + P++K++ DA  +G+ P S E   ++ F  +   L             ++ L F +
Sbjct: 3   EKNQQPTAKRLRDAREKGDVPKSAETISSAFFVGVCVALAVGIGTLFARLQALFRLAFDA 62

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            G    ++ + VL+  A +                ++ ++++V  GLL  ++ G     +
Sbjct: 63  IGAADPSARIAVLIDGAAR--------------DWAMLSAQIVAAGLLAGVLAG----FV 104

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q   V+  + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+   
Sbjct: 105 QVGGVMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTALLVATLGWLIVESLDP 164

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228
            +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS +E
Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNRKMKMSIEE 220

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           ++ E K+  G+P ++ +++ +AR      + +    A++++ +P   A+AL Y       
Sbjct: 221 VRREYKEDEGDPHVQAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVAL-YYGGIGTL 278

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           P ++A+G+   A+++ ++A +   P      LA++L+   P N  I P  ++ VAQL+
Sbjct: 279 PWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLL 336


>gi|331664423|ref|ZP_08365329.1| surface presentation of antigens protein SpaS [Escherichia coli
           TA143]
 gi|331058354|gb|EGI30335.1| surface presentation of antigens protein SpaS [Escherichia coli
           TA143]
          Length = 370

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|76788804|ref|YP_327890.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|237802523|ref|YP_002887717.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804440|ref|YP_002888594.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255310893|ref|ZP_05353463.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317193|ref|ZP_05358439.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|255348453|ref|ZP_05380460.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255502995|ref|ZP_05381385.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|76167334|gb|AAX50342.1| SctU [Chlamydia trachomatis A/HAR-13]
 gi|231272740|emb|CAX09644.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231273757|emb|CAX10538.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis B/Jali20/OT]
 gi|289525135|emb|CBJ14607.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis Sweden2]
 gi|296434679|gb|ADH16857.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296435608|gb|ADH17782.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296436531|gb|ADH18701.1| type III secretion system protein [Chlamydia trachomatis G/11222]
 gi|296437468|gb|ADH19629.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|296438396|gb|ADH20549.1| type III secretion system protein [Chlamydia trachomatis E/11023]
 gi|297139967|gb|ADH96725.1| type III secretion system protein [Chlamydia trachomatis G/9301]
          Length = 360

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 14/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65
            KTE  + K++ DA  +G    S++   F S +  ++ +   FS   +    + S L  +
Sbjct: 3   EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFLTFSLASFFAEHLGSFLVSI 59

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHV 123
             +A Q    D    V+ L +  +    + +P  G + F+   IG  ++   P  +    
Sbjct: 60  FKTAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVG--PTFSTEVF 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP  K+ +  + +K+ + +   +  +KS  KI     I+ I L +N   ++   +  P  
Sbjct: 116 KPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGIPPL 174

Query: 184 ILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +    F  +  K +  I +F   + V+D+ +  H +  +LKM K E+K E K + GNP I
Sbjct: 175 VTAQVFKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK+
Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKR 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +   A ++ +PI     LA  L  +      IP   Y+AV +++
Sbjct: 295 IIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338


>gi|15604810|ref|NP_219594.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|255506666|ref|ZP_05382305.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|3328487|gb|AAC67682.1| Yop proteins translocation protein U [Chlamydia trachomatis
           D/UW-3/CX]
 gi|297748220|gb|ADI50766.1| SctU [Chlamydia trachomatis D-EC]
 gi|297749100|gb|ADI51778.1| SctU [Chlamydia trachomatis D-LC]
          Length = 360

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 14/344 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVL 65
            KTE  + K++ DA  +G    S++   F S +  ++ +   FS   +    + S L  +
Sbjct: 3   EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFLTFSLASFFAKHLGSFLVSI 59

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHV 123
             +A Q    D    V+ L +  +    + +P  G + F+   IG  ++   P  +    
Sbjct: 60  FKTAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVG--PTFSTEVF 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP  K+ +  + +K+ + +   +  +KS  KI     I+ I L +N   ++   +  P  
Sbjct: 116 KPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGIPPL 174

Query: 184 ILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           +    F  +  K +  I +F   + V+D+ +  H +  +LKM K E+K E K + GNP I
Sbjct: 175 VTAQVFKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK+
Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKR 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +   A ++ +PI     LA  L  +      IP   Y+AV +++
Sbjct: 295 IIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338


>gi|46204446|ref|ZP_00049997.2| COG1377: Flagellar biosynthesis pathway, component FlhB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 97

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/95 (48%), Positives = 69/95 (72%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M+    RAT++I NPTH+A+ALRY  TEN AP+++AKGQ+LIA ++R IA E  I + E+
Sbjct: 1   MLANVDRATVVIANPTHFAVALRYEPTENPAPLVLAKGQDLIALRIRAIAEEKGIAVIED 60

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             LARSL+  V ++  IP  FY+AVAQ+++ ++ +
Sbjct: 61  KPLARSLYDAVQVDQTIPAEFYRAVAQILFFLFAR 95


>gi|224170147|ref|XP_002339344.1| predicted protein [Populus trichocarpa]
 gi|222874949|gb|EEF12080.1| predicted protein [Populus trichocarpa]
          Length = 113

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 67/98 (68%)

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           R +MM     AT+++TNPTH+A+A+RY      APV+VAKGQ+ +A  +RKIA E  +P+
Sbjct: 3   RRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVALNIRKIAREARVPV 62

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            E P LAR+L+   P++  IP  FY+AVA+++  +Y +
Sbjct: 63  MENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 100


>gi|325527471|gb|EGD04805.1| flagellar biosynthesis pathway component [Burkholderia sp. TJI49]
          Length = 343

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 168/348 (48%), Gaps = 24/348 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL--L 66
            K + P++K++ +A  +G+ P S E    SS  AC   +    + GI ++ + L  L  L
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAET--ISS--ACFAGVCIALAVGIGALFARLQALFRL 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLS----ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
                   +  + I  L+   +      ++++V  GLLL ++ G     +Q   V+  + 
Sbjct: 59  VFDAAGAADPSARIAVLIDGAARDWATLSAQIVAAGLLLGVLAG----FVQVGGVMAWSR 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      P 
Sbjct: 115 LMPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTTLLVATLGWVIVESLDAAVQSGFTRPI 174

Query: 183 SILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           SIL      + K+L+++  + A     + ++DI     ++  K+KMS  E++ E K+  G
Sbjct: 175 SILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRREFNQKMKMSIDEVRREHKEDEG 230

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P I+ +++ +AR      + +    A++++ +P   A+AL Y       P ++A+G+  
Sbjct: 231 DPHIEAKRRQLAREAQFAALPDRIGFASVVVYSP-RVAVAL-YYGGVGTLPWVLARGEGE 288

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            A+++ ++A +   P      LA+SL+   P N  I    ++ VAQL+
Sbjct: 289 AAERIVRLARDALRPTLANAGLAQSLYDTTPENGTIQQQHFREVAQLL 336


>gi|197122901|ref|YP_002134852.1| type III secretion exporter [Anaeromyxobacter sp. K]
 gi|196172750|gb|ACG73723.1| type III secretion exporter [Anaeromyxobacter sp. K]
          Length = 355

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 86/139 (61%), Gaps = 3/139 (2%)

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272
           W + +   K +M+K E K E+K+  G+P+++ +++   R  +R++      RA  ++ NP
Sbjct: 209 WRFAR---KHRMTKDEAKREVKEDEGDPLVRGQRRRRHRELLRNQARLEVPRADALVVNP 265

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH A+ALRY + E  AP + AKG+  +A++MR +A EH +P+ ++  LAR L+++V +  
Sbjct: 266 THVAVALRYRRDEGRAPRVTAKGKGELARQMRALAREHGVPVVQDVPLARLLYRKVKVGR 325

Query: 333 AIPPVFYKAVAQLIYKIYH 351
            IP   YKAVA ++  +Y 
Sbjct: 326 EIPAQTYKAVAAVLAFVYR 344


>gi|220917693|ref|YP_002492997.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955547|gb|ACL65931.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 355

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 86/139 (61%), Gaps = 3/139 (2%)

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272
           W + +   K +M+K E K E+K+  G+P+++ +++   R  +R++      RA  ++ NP
Sbjct: 209 WRFAR---KHRMTKDEAKREVKEDEGDPLVRGQRRRRHRELLRNQARLEVPRADALVVNP 265

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH A+ALRY + E  AP + AKG+  +A++MR +A EH +P+ ++  LAR L+++V +  
Sbjct: 266 THVAVALRYRRDEGRAPRVTAKGKGELARQMRALAREHGVPVVQDVPLARLLYRKVKVGR 325

Query: 333 AIPPVFYKAVAQLIYKIYH 351
            IP   YKAVA ++  +Y 
Sbjct: 326 EIPAQTYKAVAAVLAFVYR 344


>gi|34500880|gb|AAQ73908.1| HrcU [Pectobacterium carotovorum subsp. carotovorum]
          Length = 359

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 167/358 (46%), Gaps = 28/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE P+ KK+EDA  +G    S++     +   +L C++ L         S    L  L
Sbjct: 3   EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55

Query: 66  LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +    QR     + +   + H +  L+ +  ++   +  ++  +G +L Q  P+     +
Sbjct: 56  VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWL-QYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K    R++     K+++S+  LV  + + +K +++GT+    +      +++    + H 
Sbjct: 115 KLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K
Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234

Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294
             +KS+A     H++M   A  R       A +++ NPTHYA+ L Y   +   P ++ K
Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           G+N  A+ +   A + +IP+     L R+L++  P    IP    +AVAQ +Y++  +
Sbjct: 290 GENQAARDLIAQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRVLRQ 346


>gi|212711698|ref|ZP_03319826.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM
           30120]
 gi|212685800|gb|EEB45328.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM
           30120]
          Length = 361

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 167/348 (47%), Gaps = 28/348 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG---IYSVTSDLHVL 65
            KTE P+ KKI+D+  +G +  S++     SI A ++    F   G   +Y++   +  +
Sbjct: 3   EKTEKPTDKKIKDSAKKGQSYKSKD-----SIAAIVLVTGAFVVDGMSSLYNLGGLMKKI 57

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +     ++D      LL   S     +V+P L+   + G    L+Q    L    VK 
Sbjct: 58  LLNPNDIYIDD------LLWQFSKIFMSIVLPILIACFLSGAIISLLQSRFRLATEAVKL 111

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT------MLDFISA 179
            F +++   G K+I+S+N+L    K F+K IL   + ++S T  +        ML   + 
Sbjct: 112 DFTKLNPIAGFKKIFSLNSL----KEFIKAILYLLVFSVSATTFFIVWRHEIFMLYRTTI 167

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           N  +  +    T+  + + + L +A + VL D    +  +   LKM KQE+K E K + G
Sbjct: 168 NGMTTQW---VTLCIIFVFVFLAVAVIIVLVDAIAEFFLFIKNLKMEKQEVKKEHKDNEG 224

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K+ +K + +  +  ++  +   +T ++ NPTH A+ + Y    +  P L+ K + L
Sbjct: 225 DPHLKSARKGLHQEILSEEVKSSIQNSTFVMANPTHIAMLIYYDANISPLPFLMFKTRGL 284

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AK + K A E NIP+  +  LAR +++    +S I     + V Q++
Sbjct: 285 QAKAVIKYAEEQNIPVVRDIILARQIWRNYKKDSFIDEQGLQDVMQIV 332


>gi|15834985|ref|NP_296744.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270285154|ref|ZP_06194548.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270289175|ref|ZP_06195477.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|301336549|ref|ZP_07224751.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
 gi|7190408|gb|AAF39227.1| type III secretion inner membrane protein SctU [Chlamydia muridarum
           Nigg]
          Length = 360

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 157/343 (45%), Gaps = 12/343 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++   F S +  ++ +   FS   +     L   L S
Sbjct: 3   EKTEKATPKRLRDARKKGQVAKSQD---FPSAITFIVSMFMTFSLSSF-FAEHLGGFLVS 58

Query: 69  --ATQRKLEDISHIVFLLTHLSLSASRLVIP--GLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              T  +  D    V+ L +  +    + +P  G + F+   IG  ++   P  +    K
Sbjct: 59  IFRTAPQQHDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLLIGFLVVG--PTFSTEVFK 116

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  K+ +  E +K+ + +   +  +KS  KI     I+ I L +N   ++   +  P  +
Sbjct: 117 PDLKKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVL-KNRVELVIETAGVPPLV 175

Query: 185 LYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
               F  +  K +  I +F   + V+D+ +  H +  +LKM K E+K E K + GNP IK
Sbjct: 176 TAQIFKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIK 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL A+++
Sbjct: 236 GRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRI 295

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
              A ++ +PI     LA  L  +      IP   Y+AV +++
Sbjct: 296 IAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEIL 338


>gi|221209600|ref|ZP_03582581.1| bcscU [Burkholderia multivorans CGD1]
 gi|38639345|gb|AAR25811.1| BcscU [Burkholderia multivorans E243]
 gi|221170288|gb|EEE02754.1| bcscU [Burkholderia multivorans CGD1]
          Length = 343

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 174/366 (47%), Gaps = 50/366 (13%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL------------- 44
           MSE + P      P++K++ +A  +G+ P S E   ++ F  +   L             
Sbjct: 1   MSEKNQP------PTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQA 54

Query: 45  IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104
           ++ L F + G    ++ +  L+ +A +                +LSA ++V  GLLL ++
Sbjct: 55  LFRLVFDAVGAADPSARIAALIDAAAR-------------DWATLSA-QIVAAGLLLGVL 100

Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
            G     +Q   V+  + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +  
Sbjct: 101 AG----FVQVGGVMAWSRLVPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGW 156

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYS 220
            + E+    +      P SIL      + K+L+++  + A     + ++DI    H++  
Sbjct: 157 LIVESLDPSVQSGFTRPMSILA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNR 212

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           K+KMS  E++ E K+  G+P I+ +++ +AR      + +    A++++ +P   A+AL 
Sbjct: 213 KMKMSIDEVRREHKEDEGDPHIEAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVALH 271

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y       P ++A+G+   A+++ ++A +   P      LA++L+   P N  I P  ++
Sbjct: 272 YGGI-GTLPWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYDTTPENGTIQPQHFR 330

Query: 341 AVAQLI 346
            VAQL+
Sbjct: 331 EVAQLL 336


>gi|167615475|ref|ZP_02384110.1| type III secretion system protein [Burkholderia thailandensis Bt4]
          Length = 360

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 173/355 (48%), Gaps = 34/355 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ +K++ A  +G    S++ +  +++ A +  L    + G   +T  L   + 
Sbjct: 3   EEKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVL----TAGEAMLTGGLSRAIR 58

Query: 68  SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +A      D  H        +  L  L+ SA   ++P +   ++ G+ S   Q   ++ L
Sbjct: 59  TAL-----DFVHGERTPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  +S   GIKRI+S+ +L+  +K  VK I++  +I   +T    ++   + A+
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMT----SLFPLVVAS 169

Query: 181 PHSILYHAFFTVRKVLIMILLFI--------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
               +Y A   + +VL  +L+ +        A     D   S   +    +M+K+E K E
Sbjct: 170 ----VYEATPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKRE 225

Query: 233 IKQSYGNPIIKNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVL 291
            K+S G+P  K  ++ +AR         +   +A +++ NPTHYA+A+RY   E+  P +
Sbjct: 226 HKESEGDPHTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRV 285

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           + K  +  A  +R+ A+   +PI   PS+AR+L++ V  ++AIP   ++ VA ++
Sbjct: 286 IEKAVDDGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339


>gi|329942812|ref|ZP_08291591.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10]
 gi|332287404|ref|YP_004422305.1| type III secretion system protein [Chlamydophila psittaci 6BC]
 gi|313847984|emb|CBY16981.1| putative membrane transport protein [Chlamydophila psittaci RD1]
 gi|325506497|gb|ADZ18135.1| type III secretion system protein [Chlamydophila psittaci 6BC]
 gi|328815072|gb|EGF85061.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10]
 gi|328914653|gb|AEB55486.1| type III secretion protein, hrpY/hrcU family [Chlamydophila
           psittaci 6BC]
          Length = 360

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 16/344 (4%)

Query: 10  KTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSP--GIYSVTSDLHV 64
           KTE  + K++ DA  +G    S++   A  F   +    YL  FF+   G + V+     
Sbjct: 4   KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFKEA 63

Query: 65  LLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            +    +  L  +++ + L+  T L L  +   +  L+ F++ G         P  +   
Sbjct: 64  PINHDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVG---------PTFSTEV 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            KP  K+ +  E +K+ + +  L+  +KS +KI     I+ ++L      +++    +P 
Sbjct: 115 FKPDLKKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIVETAGVSPI 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I       + K +  I +F   + VLD+ +    +  +LKM K E+K E K + GNP I
Sbjct: 175 VIAVIFKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK+
Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKR 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +   A ++ IPI     LA  L+ +      IP   Y+A+ +++
Sbjct: 295 IITEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338


>gi|89898354|ref|YP_515464.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89331726|dbj|BAE81319.1| type III secretory flagellar biosynthesis Yop translocation protein
           U [Chlamydophila felis Fe/C-56]
          Length = 360

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 162/348 (46%), Gaps = 24/348 (6%)

Query: 10  KTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
           KTE  + K++ DA  +G    S++   A  F   +    YL  FF+  + S    +    
Sbjct: 4   KTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIF--- 60

Query: 67  ASATQRKLEDISH-----IVFLLTHLSL-SASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 K   I+H     + +L   L+L   + L + G + F+   +G  ++   P  + 
Sbjct: 61  ------KEAPINHDPRVTLYYLQNCLTLILTTSLPLLGAVGFVGIIVGFLVVG--PTFST 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              KP  K+ +  E +K+ + +  L+  +KS +KI     I+ ++L      +++    +
Sbjct: 113 EVFKPDLKKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNRVPLIIETAGVS 172

Query: 181 PHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           P  ++  A F   + K +  I +F   + VLD+ +    +  +LKM K E+K E K + G
Sbjct: 173 P--LVIAAIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEG 230

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP IK R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL
Sbjct: 231 NPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINL 290

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AK++   A ++ IPI     LA  L+ +      IP   Y+A+ +++
Sbjct: 291 RAKRIITEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338


>gi|167828885|ref|ZP_02460356.1| type III secretion system protein [Burkholderia pseudomallei 9]
          Length = 360

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 77  LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339


>gi|167923476|ref|ZP_02510567.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 360

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 77  LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339


>gi|238764055|ref|ZP_04625010.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii
           ATCC 33638]
 gi|238697726|gb|EEP90488.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii
           ATCC 33638]
          Length = 358

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 160/341 (46%), Gaps = 17/341 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P++K++ +A  +G    S E    +S +   + + +FF  G  ++   + VL+ S
Sbjct: 7   EKNEKPTAKRLREAREKGQVIKSVE---ITSGIQLAVLVAYFFLAG-DTLLDQVGVLIRS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVI------PGLLLFMMFGIGSYLIQRIPVLNLNH 122
           + ++  +  +   F L  +      ++I       G L+ M    G  L Q  P+L    
Sbjct: 63  SIKQLQQPFT---FALARIGSECMAVLIHIVGILGGALILMTIIAG--LAQVGPLLATKA 117

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           V    + ++     K+++S+ +L    KS +K+ ++ T+I   L   Y +   +++    
Sbjct: 118 VAFKGEHINPINNAKQLFSLRSLFELTKSLLKVGVL-TLIFGYLLARYASSFGYLAYCGS 176

Query: 183 SILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
                 F T+   L+  L+      ++LD  +  +    +LKMS +E+K E K S G+P 
Sbjct: 177 YCAIPVFGTLMSWLLGALIACYGVFSLLDYSFQRYNTLKQLKMSHEEVKREHKDSDGDPH 236

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK +++ + +        +   R+T ++ NPTH+A+ L Y   +   PV++ KG+   A 
Sbjct: 237 IKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYHPDDAPLPVVIEKGKGERAA 296

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
            + K+A +  IPI E  +LAR+L + V     IP   ++ V
Sbjct: 297 LIIKLAQQQGIPIVENIALARTLHRDVACGDTIPEPLFEPV 337


>gi|53722644|ref|YP_111629.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           K96243]
 gi|52213058|emb|CAH39096.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
          Length = 360

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 77  LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339


>gi|50121004|ref|YP_050171.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560427|gb|AAS20387.1| HrcU [Pectobacterium atrosepticum]
 gi|49611530|emb|CAG74978.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 359

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 162/353 (45%), Gaps = 24/353 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE P+ KK+EDA  +G    S++     +   +L C++ L         S    L  L
Sbjct: 3   EKTEQPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55

Query: 66  LASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +    QR     + +   + H  ++ A  L +    + ++  I    +Q  P+     +K
Sbjct: 56  VQLPLQRLGTPFAQVAKEVFHDAAVLAGTLCLLSAAIAVLLRIAGGWLQYGPLFAPEALK 115

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
               R++     K+++S+  LV  + + +K +++GT+    +      +++    + H  
Sbjct: 116 LDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGF 175

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                  + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K 
Sbjct: 176 WQGVKALLTRITRTTLTALLVLSALDFGMQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKG 235

Query: 245 RQKSIARS--------RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            +KS+A          R + K+ +A     +++ NPTHYA+ L Y   +   P ++ KG+
Sbjct: 236 HRKSLAHELANESAAPRPKPKLEDAD----MLLVNPTHYAVGLYYRPGKTPLPRILFKGE 291

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           N  A+++   A +  IP+     L R+L++  P    IP    +AVAQ +Y++
Sbjct: 292 NKAAQELIAQAKKAGIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRV 343


>gi|167724367|ref|ZP_02407603.1| type III secretion system protein [Burkholderia pseudomallei DM98]
          Length = 360

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 77  LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 195 VVAVLAAADYKIARVMFIRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339


>gi|167898942|ref|ZP_02486343.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|167907272|ref|ZP_02494477.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 399

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 116 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 175

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 176 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 233

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 234 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 293

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 294 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 353

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 354 ARALYR-VERDASIPEELFETVAAIL 378


>gi|167577327|ref|ZP_02370201.1| type III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 360

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 175/359 (48%), Gaps = 42/359 (11%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ +K++ A  +G    S++ +  +++ A +  L    + G   +T  L   + 
Sbjct: 3   EEKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVL----TAGEAMLTGGLSRAIR 58

Query: 68  SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +A      D  H        +  L  L+ SA   ++P +   ++ G+ S   Q   ++ L
Sbjct: 59  TAL-----DFVHGERTPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  +S   GIKRI+S+ +L+  +K  VK I++  +I   +T    ++   + A+
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMT----SLFPLVVAS 169

Query: 181 PHSILYHAFFTVRKVLIMILLFI--------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
                Y A   + +VL  +L+ +        A     D   S   +    +M+K+E K E
Sbjct: 170 ----AYEATPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKRE 225

Query: 233 IKQSYGNPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
            K+S G+P  K  ++ +AR     +  R K+     +A +++ NPTHYA+A+RY   E+ 
Sbjct: 226 HKESEGDPHTKGERRRLAREIATSAPPRQKV----GQANVLVVNPTHYAVAIRYAPDEHP 281

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            P ++ K  +  A  +R+ A+   +PI   PS+AR+L++ V  ++AIP   ++ VA ++
Sbjct: 282 LPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339


>gi|83717264|ref|YP_438947.1| type III secretion system protein HrcU [Burkholderia thailandensis
           E264]
 gi|257142051|ref|ZP_05590313.1| type III secretion system protein HrcU [Burkholderia thailandensis
           E264]
 gi|83651089|gb|ABC35153.1| type III secretion inner membrane protein [Burkholderia
           thailandensis E264]
          Length = 360

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 175/359 (48%), Gaps = 42/359 (11%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ +K++ A  +G    S++ +  +++ A +  L    + G   +T  L   + 
Sbjct: 3   EEKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVL----TAGEAMLTGGLSRAIR 58

Query: 68  SATQRKLEDISH-------IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +A      D  H        +  L  L+ SA   ++P +   ++ G+ S   Q   ++ L
Sbjct: 59  TAL-----DFVHGERTPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  +S   GIKRI+S  +L+  +K  VK I++  +I   +T    ++   + A+
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSTKSLLELVKMIVKAIVLTCVIWKMMT----SLFPLVVAS 169

Query: 181 PHSILYHAFFTVRKVLIMILLFI--------ATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
               +Y A   + +VL  +L+ +        A     D   S   +    +M+K+E K E
Sbjct: 170 ----VYEATPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKRE 225

Query: 233 IKQSYGNPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
            K+S G+P  K  ++ +AR     +  R K+     +A +++ NPTHYA+A+RY   E+ 
Sbjct: 226 HKESEGDPHTKGERRRLAREIATSAPPRQKV----GQANVLVVNPTHYAVAIRYAPDEHP 281

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            P ++ K  +  A  +R+ A+   +PI   PS+AR+L++ V  ++AIP   ++ VA ++
Sbjct: 282 LPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339


>gi|167915634|ref|ZP_02502725.1| type III secretion system protein [Burkholderia pseudomallei 112]
          Length = 396

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 113 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 172

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 173 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 230

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 231 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 290

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 291 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 350

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 351 ARALYR-VERDASIPEELFETVAAIL 375


>gi|167850345|ref|ZP_02475853.1| type III secretion system protein [Burkholderia pseudomallei B7210]
          Length = 420

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRYAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|218706359|ref|YP_002413878.1| surface presentation of antigens protein SpaS [Escherichia coli
           UMN026]
 gi|300898070|ref|ZP_07116438.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           198-1]
 gi|218433456|emb|CAR14358.1| Surface presentation of antigens protein [Escherichia coli UMN026]
 gi|300358208|gb|EFJ74078.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           198-1]
          Length = 370

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  G+P IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGSPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|253688600|ref|YP_003017790.1| type III secretion protein, YscU/HrpY family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755178|gb|ACT13254.1| type III secretion protein, YscU/HrpY family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 359

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 168/358 (46%), Gaps = 28/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE P+ KK+EDA  +G    S++     +   +L C++ L         S    L  L
Sbjct: 3   EKTEQPTDKKLEDARRKGEVGQSQDVPKLLICVGLLECVLAL-------ADSTMGKLQTL 55

Query: 66  LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +    QR     + +   + H +  L+ +  ++   +  ++  +G + IQ  P+     +
Sbjct: 56  VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRIVGGW-IQYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K    R++     K+++S+  LV  + + +K +++GT+    +      +++    + H 
Sbjct: 115 KLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K
Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234

Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294
             +KS+A     H++M   A  R       A +++ NPTHYA+ L Y   +   P ++ K
Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           G++  A+++   A + +IP+     L R+L++  P    IP    +AVAQ +Y++  +
Sbjct: 290 GEDSAAQELIAQAKKADIPVIRFIWLTRTLYRTTPEGQYIPRETLQAVAQ-VYRVLRQ 346


>gi|294140998|ref|YP_003556976.1| type III secretion system EscU protein [Shewanella violacea DSS12]
 gi|293327467|dbj|BAJ02198.1| type III secretion system EscU protein [Shewanella violacea DSS12]
          Length = 349

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 156/340 (45%), Gaps = 9/340 (2%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS- 68
           KTE P+ K++++A N G    S E     + L   I L +F   G   + S ++++ ++ 
Sbjct: 4   KTEKPTEKQLKEARNRGQVIKSPE---IVTGLQMAIILGYFLFEGQNLMQSIMYLINSTI 60

Query: 69  -ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A    LE  ++ +  L   ++ A R +    L+ +   I   + Q  PV     +KPS 
Sbjct: 61  DAINLPLETAANQI--LDRFAMVALRFLGGLALVLICTIIVGNIAQTGPVWAAESLKPSM 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++++    K++ S  ++   +K+ VK+ ++  ++   L   Y     ++          
Sbjct: 119 NKLNVVNNAKQMISWKSVFELVKNLVKVTVL-CLVFYYLLHRYVNSFQYLPLCGEECGIE 177

Query: 188 AFFTVRKVLIMILLFIATL-TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
              T+   L    L       V D  +       +LKMSK +IK E K S GNP +K ++
Sbjct: 178 VISTLITWLWGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNPEVKQKR 237

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + I R      +     ++++++ NPTH A+ L Y   E   P+++ K ++ +A  +  +
Sbjct: 238 REIQREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMALHIVGM 297

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A +  IP+ E   LAR+++ Q+   S I    ++ VA L+
Sbjct: 298 AEKAGIPVVENIPLARAIYSQIETGSPISEDLFEPVADLL 337


>gi|226198428|ref|ZP_03793996.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929485|gb|EEH25504.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
          Length = 420

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|53716421|ref|YP_106206.1| type III secretion system protein HrcU [Burkholderia mallei ATCC
           23344]
 gi|52422391|gb|AAU45961.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
           23344]
          Length = 360

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 77  LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 136

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 137 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 194

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 195 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 254

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 255 RVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 314

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 315 ARALYR-VERDASIPEELFETVAAIL 339


>gi|221200564|ref|ZP_03573606.1| bcscU [Burkholderia multivorans CGD2M]
 gi|221209221|ref|ZP_03582212.1| bcscU [Burkholderia multivorans CGD2]
 gi|221170911|gb|EEE03367.1| bcscU [Burkholderia multivorans CGD2]
 gi|221179905|gb|EEE12310.1| bcscU [Burkholderia multivorans CGD2M]
          Length = 343

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 169/358 (47%), Gaps = 44/358 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52
            K + P++K++ +A  +G+ P S E   ++ F  +   L             ++ L F +
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            G    ++ +  L+ +A +                +LSA ++V  GLLL ++ G     +
Sbjct: 63  AGAADPSARIATLIDAAAR-------------DWATLSA-QIVAAGLLLGVLAG----FV 104

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q   V+  + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+   
Sbjct: 105 QVGGVMAWSRLVPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDP 164

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228
            +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS  E
Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDE 220

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           ++ E K+  G+P I  +++ +AR      + +    A++++ +P   A+AL Y       
Sbjct: 221 VRREHKEDEGDPHIAAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVAL-YYGGIGTL 278

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           P ++A+G+   A+++ ++A     P      LA++L+   P N  I P  ++ VAQL+
Sbjct: 279 PWVLARGEGDAAERIVRLARNALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLL 336


>gi|126445400|ref|YP_001063276.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           668]
 gi|237510110|ref|ZP_04522825.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254186950|ref|ZP_04893466.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254301368|ref|ZP_04968812.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|126224891|gb|ABN88396.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 668]
 gi|157810968|gb|EDO88138.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|157934634|gb|EDO90304.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|235002315|gb|EEP51739.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 420

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|217422649|ref|ZP_03454152.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|217394880|gb|EEC34899.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
          Length = 420

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|134281989|ref|ZP_01768695.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|134246518|gb|EBA46606.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
          Length = 420

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|168785695|ref|ZP_02810702.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|261226164|ref|ZP_05940445.1| putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256582|ref|ZP_05949115.1| putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. FRIK966]
 gi|189374061|gb|EDU92477.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
          Length = 373

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 148/317 (46%), Gaps = 8/317 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +     SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKEQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLF 325
           E  IPI  +  LAR ++
Sbjct: 295 EIGIPIITDKKLARKIY 311


>gi|238752378|ref|ZP_04613856.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC
           43380]
 gi|238709419|gb|EEQ01659.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC
           43380]
          Length = 320

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 2/239 (0%)

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
           S + Q  P+L    V+   + ++     K+++S+ +L    KS +K+ ++ T+I   L  
Sbjct: 67  SCVAQVGPLLATKAVEFKGEHINPINNAKQLFSMRSLFELTKSLLKVGVL-TLIFGYLLM 125

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQ 227
           +Y T   +++    S     F T+   L+  LL      ++LD  +  +    +LKMS++
Sbjct: 126 HYATSFGYLTYCGSSCAIPVFATLMSWLLGALLACYVVFSLLDYSFQRYNTMKQLKMSRE 185

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           +IK E K S G+P IK +++ +          +   R+T ++ NPTH+A+ L Y   +  
Sbjct: 186 DIKREHKDSDGDPEIKQKRRQLQHEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYHADDAP 245

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            PV++ KG    A  + K+A +  +P+ E  +LAR+L + V     IP   ++ VA ++
Sbjct: 246 LPVVIEKGAGERAALIIKLAEQQGVPVIENITLARALHRDVACGDTIPEPLFEPVAAIL 304


>gi|254185079|ref|ZP_04891668.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|184215671|gb|EDU12652.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
          Length = 420

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|167820512|ref|ZP_02452192.1| type III secretion system protein [Burkholderia pseudomallei 91]
          Length = 427

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 144 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 203

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 204 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 261

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 262 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 321

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 322 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 381

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 382 ARALYR-VERDASIPEELFETVAAIL 406


>gi|167743331|ref|ZP_02416105.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|254194002|ref|ZP_04900434.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|169650753|gb|EDS83446.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
          Length = 420

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|86157785|ref|YP_464570.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774296|gb|ABC81133.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 355

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 86/139 (61%), Gaps = 3/139 (2%)

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272
           W + +   K +M+K E K E+K+  G+P+++ R++   R  +R++      RA  ++ NP
Sbjct: 209 WRFAR---KHRMTKDEAKREVKEDEGDPLVRGRRRRRHRELLRNQARLEVPRADALVVNP 265

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH A+ALRY + E  AP + AKG+  +A++MR +A EH +P+ ++  LAR L+++V +  
Sbjct: 266 THVAVALRYRRDEGRAPRVTAKGKGELARQMRALAREHGVPVVQDVPLARLLYRKVKVGR 325

Query: 333 AIPPVFYKAVAQLIYKIYH 351
            IP   YKAVA ++  +Y 
Sbjct: 326 EIPAQTYKAVAAVLAFVYR 344


>gi|76574808|gb|ABA47282.1| HrcU [Pseudomonas cichorii]
          Length = 361

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 165/350 (47%), Gaps = 12/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P+ KK++DA  +G    S++   LF  I A LI ++            +L VL  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDIPKLF--IFAALIEMILAMVDSGMERLKELMVLPI 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
               R     + +  ++T   L     ++P L +  +  +    +Q  P+     +K  F
Sbjct: 61  MELDRPFG--AALGEVMTKAGLELLLFMLPVLGVAAIMRLAGGWVQFGPLFATEALKLDF 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++     ++++S   L N   S  K +++  ++   L  +   ++     +  S    
Sbjct: 119 ERLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKA 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                R++  + L  +  L ++D     + +    +MS ++I+ E K+S G+P +K+ +K
Sbjct: 179 LVDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRK 238

Query: 248 SIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           S+AR   +     A ++A +     ++ NPTH+A+AL Y   +   P ++ KG++  A++
Sbjct: 239 SLAREISQQPGSAAPAKAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADARE 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           + + A +  +P+     LAR+L+++  +   IP    +AVAQ +Y++  +
Sbjct: 299 LIERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ-VYRLLRE 346


>gi|330812427|ref|YP_004356889.1| type III secretion protein, membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|312597804|gb|ADQ89919.1| RscU [Pseudomonas fluorescens]
 gi|327380535|gb|AEA71885.1| putative type III secretion protein, putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 366

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 173/361 (47%), Gaps = 22/361 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYS--- 57
           MSE+     KT+  + KKI DA N+G    S++ S    + A     L      + +   
Sbjct: 1   MSEDSG--EKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGD 58

Query: 58  -VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL--FMMFGIGSYLIQR 114
            VT  LH L     +   E ++H   +L + +L    L I   L+  ++ FG        
Sbjct: 59  MVTFPLHRLDVDFVRAFEETLAHAGGVLLNFTLMTVGLAIVTRLVAGWIQFGF------- 111

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             +     ++P   R++     K+++S   L+N     VK + +GT+I +       +++
Sbjct: 112 --LFAPEALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLI 169

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
           + ++ + +S         R ++ + L  +  L +LD G   + +  +L+MS++E++ E K
Sbjct: 170 NLVNGDLNSYWRGLASLFRHIMHICLGVLLVLALLDFGLQKYFFAKRLRMSEEEVRKEFK 229

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEAT---SRATIIITNPTHYALALRYIQTENDAPVL 291
           +  G+P +K  ++S+AR  +   + + T     A +++ NPTH+A+AL Y   E   P L
Sbjct: 230 EMEGDPHVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQL 289

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + KG +  A+ + + A    +P+ +   LAR+++++  + + IP    +AVA  IY++  
Sbjct: 290 IVKGVDAEARALIERAKVARVPVIQCIWLARTIYRE-DVGAYIPRETLQAVAH-IYRVLR 347

Query: 352 K 352
           +
Sbjct: 348 E 348


>gi|238563893|ref|ZP_00438080.2| type III secretion inner membrane protein [Burkholderia mallei GB8
           horse 4]
 gi|254176635|ref|ZP_04883293.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
           10399]
 gi|254201086|ref|ZP_04907451.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           FMH]
 gi|254205051|ref|ZP_04911404.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           JHU]
 gi|147748698|gb|EDK55773.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           FMH]
 gi|147754637|gb|EDK61701.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           JHU]
 gi|160697677|gb|EDP87647.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
           10399]
 gi|238519734|gb|EEP83202.1| type III secretion inner membrane protein [Burkholderia mallei GB8
           horse 4]
          Length = 420

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|161520299|ref|YP_001583726.1| type III secretion exporter [Burkholderia multivorans ATCC 17616]
 gi|189353522|ref|YP_001949149.1| flagellar biosynthesis pathway component [Burkholderia multivorans
           ATCC 17616]
 gi|160344349|gb|ABX17434.1| type III secretion exporter [Burkholderia multivorans ATCC 17616]
 gi|189337544|dbj|BAG46613.1| flagellar biosynthesis pathway component [Burkholderia multivorans
           ATCC 17616]
          Length = 343

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 169/358 (47%), Gaps = 44/358 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52
            K + P++K++ +A  +G+ P S E   ++ F  +   L             ++ L F +
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            G    ++ +  L+ +A +                +LSA ++V  GLLL ++ G     +
Sbjct: 63  AGAADPSARIATLIDAAAR-------------DWATLSA-QIVAAGLLLGVLAG----FV 104

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           Q   V+  + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+   
Sbjct: 105 QVGGVMAWSRLVPQLSRLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDP 164

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228
            +      P S L      + K+L+++  + A     + ++DI    H++  K+KMS  E
Sbjct: 165 SVQSGFTRPMSTLA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDE 220

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           ++ E K+  G+P I  +++ +AR      + +    A++++ +P   A+AL Y       
Sbjct: 221 VRREHKEDEGDPHIAAKRRQLAREVQFASLPDRIGFASVVVYSP-RVAVAL-YYGGIGTL 278

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           P ++A+G+   A+++ ++A +   P      LA++L+   P N  I P  ++ VAQL+
Sbjct: 279 PWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLL 336


>gi|76819722|ref|YP_335839.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1710b]
 gi|76584195|gb|ABA53669.1| type III secretion inner membrane protein [Burkholderia
           pseudomallei 1710b]
          Length = 399

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 139/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA   ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 116 LHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 175

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 176 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 233

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 234 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 293

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 294 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 353

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 354 ARALYR-VERDASIPEELFETVAAIL 378


>gi|29840222|ref|NP_829328.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29834570|gb|AAP05206.1| type III secretion protein, hrpY/hrcU family [Chlamydophila caviae
           GPIC]
          Length = 360

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 157/354 (44%), Gaps = 36/354 (10%)

Query: 10  KTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFFFS 52
           KTE  + K++ DA  +G    S++                 AS F+  L   +  +F  +
Sbjct: 4   KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFKQA 63

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
           P  +     L+ L     Q  L     ++ L T L L  +   +  ++ F++ G      
Sbjct: 64  PINHDPKVTLYYL-----QNCL-----VLILTTSLPLLGAVGFVGIIVGFLVVG------ 107

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
              P  +    KP  K+ +  + +K+ + +  L+  +KS +KI     I+ ++L      
Sbjct: 108 ---PTFSTEVFKPDLKKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPL 164

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +++    +P  I       + K +  I +F   + VLD+ +    +  +LKM K E+K E
Sbjct: 165 IIETAGVSPIVIAVIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQE 224

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K + GNP IK R++ IA+             A+ +++NP   A+A+ Y+  +  AP ++
Sbjct: 225 FKDTEGNPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWII 284

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A G NL AK++   A ++ +PI     LA  L+ +      IP   Y+A+ +++
Sbjct: 285 AMGINLRAKRIIVEAEKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338


>gi|2444073|gb|AAB71508.1| cytoplasmic membrane component required for type III
           (contact-dependent) secretion [Chlamydophila caviae]
          Length = 360

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 159/356 (44%), Gaps = 40/356 (11%)

Query: 10  KTEAPSSKKIEDALNEGNAPISRE-----------------ASLFSSILACLIYLLFFFS 52
           KTE  + K++ DA  +G    S++                 AS F+  L   +  +F  +
Sbjct: 4   KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFKQA 63

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
           P  +     L+ L     Q  L     ++ L T L L  +   +  ++ F++ G      
Sbjct: 64  PINHDPKVTLYYL-----QNCL-----VLILTTSLPLLGAVGFVGIIVGFLVVG------ 107

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
              P  +    KP  K+ +  + +K+ + +  L+  +KS +KI     I+ ++L      
Sbjct: 108 ---PTFSTEVFKPDLKKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPL 164

Query: 173 MLDFISANPHSILYHAFFT--VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +++    +P  I+    F   + K +  I +F   + VLD+ +    +  +LKM K E+K
Sbjct: 165 IIETAGVSP--IVIGVIFKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVK 222

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K + GNP IK R++ IA+             A+ +++NP   A+A+ Y+  +  AP 
Sbjct: 223 QEFKDTEGNPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPW 282

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++A G NL AK++   A ++ +PI     LA  L+ +      IP   Y+A+ +++
Sbjct: 283 IIAMGINLRAKRIIVEAEKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338


>gi|124382486|ref|YP_001025750.1| type III secretion system protein HrcU [Burkholderia mallei NCTC
           10229]
 gi|126446560|ref|YP_001077835.1| type III secretion system protein HrcU [Burkholderia mallei NCTC
           10247]
 gi|254359173|ref|ZP_04975445.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           2002721280]
 gi|126239414|gb|ABO02526.1| type III secretion inner membrane protein [Burkholderia mallei NCTC
           10247]
 gi|148028360|gb|EDK86320.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           2002721280]
 gi|261826829|gb|ABM98869.2| type III secretion inner membrane protein [Burkholderia mallei NCTC
           10229]
          Length = 420

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RGGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|167840287|ref|ZP_02466971.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 360

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 126/237 (53%), Gaps = 14/237 (5%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY-FTMLD 175
           ++ L  V P F  ++   GIKRI+S+ +L+  +K  VK I++  +I   +T  +   +  
Sbjct: 110 MITLEPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAIVLACVIWKMMTSLFPLVVAS 169

Query: 176 FISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              A P   L    +TV  K++ ++ L +A     D   +   +    +M+K+E K E K
Sbjct: 170 VYEATPQ--LARVLWTVLMKLVGVVALVVAVFAAADYKIARVMFIRDNRMTKEETKREHK 227

Query: 235 QSYGNPIIKNRQKSIAR-----SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           +S G+P  K  ++ +AR     +  R K+     +A +++ NPTHYA+A+RY   E+  P
Sbjct: 228 ESEGDPHTKGERRRLAREIATSAPPRQKV----GQANVLVVNPTHYAVAIRYAPDEHPLP 283

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++ K  +  A  +R+ A+   +PI   PS+AR+L++ V  ++AIP   ++ VA ++
Sbjct: 284 RVIEKAVDAGALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAIL 339


>gi|254263389|ref|ZP_04954254.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
 gi|254214391|gb|EET03776.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
          Length = 420

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 139/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA   ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|126458610|ref|YP_001076232.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1106a]
 gi|242311362|ref|ZP_04810379.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|126232378|gb|ABN95791.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106a]
 gi|242134601|gb|EES21004.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
          Length = 420

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 139/266 (52%), Gaps = 6/266 (2%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA   ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 137 LHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKRIFSLK 196

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTV-RKVLIMILL 201
           +L+  +K  VK +++  +    +T  +   +     A P   L    +TV  K+L  + +
Sbjct: 197 SLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQ--LARVLWTVLMKLLGTVSV 254

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMME 260
            +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR         +
Sbjct: 255 VVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQ 314

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
              +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   PS+
Sbjct: 315 RVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPSV 374

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLI 346
           AR+L++ V  +++IP   ++ VA ++
Sbjct: 375 ARALYR-VERDASIPEELFETVAAIL 399


>gi|62185075|ref|YP_219860.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62148142|emb|CAH63899.1| putative membrane transport protein [Chlamydophila abortus S26/3]
          Length = 360

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 16/344 (4%)

Query: 10  KTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSP--GIYSVTSDLHV 64
           KTE  + K++ DA  +G    S++   A  F   +    YL  FF+   G + V+     
Sbjct: 4   KTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFKEA 63

Query: 65  LLASATQRKLEDISHIVFLL--THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
            +    +  L  +++ + L+  T L L  +   +  L+ F++ G         P  +   
Sbjct: 64  PINHDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVG---------PTFSTEV 114

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            KP  K+ +  E +K+ + +  L+  +KS +KI     I+ ++L      +++    +P 
Sbjct: 115 FKPDLKKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPI 174

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I       + K +  I +F   + VLD+ +    +  +LKM K E+K E K + GN  I
Sbjct: 175 VIAVIFKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNLEI 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R++ IA+             A+ +++NP   A+A+ YI  +  AP ++A G NL AK+
Sbjct: 235 KGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYIPEKYKAPWIIAMGINLRAKR 294

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +   A ++ IPI     LA  L+ +      IP   Y+A+ +++
Sbjct: 295 IITEAEKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEIL 338


>gi|227114165|ref|ZP_03827821.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 359

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 167/358 (46%), Gaps = 28/358 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS---LFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE P+ KK+EDA  +G    S++     +   +L C++ L         S    L  L
Sbjct: 3   EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICIGLLECVLTL-------ADSTMGKLQTL 55

Query: 66  LASATQRKLEDISHIVFLLTHLS--LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +    QR     + +   + H +  L+ +  ++   +  ++  +G +L Q  P+     +
Sbjct: 56  VQLPLQRLDAPFAQVAKEVFHDAAVLAGTLCLLAAAIAVLLRVVGGWL-QYGPLFAPEAL 114

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
                R++     K+++S+  LV  + + +K +++GT+    +      +++    + H 
Sbjct: 115 NLDLNRLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHG 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K
Sbjct: 175 FWQGVKALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMK 234

Query: 244 NRQKSIARSRIRHKMME--ATSR-------ATIIITNPTHYALALRYIQTENDAPVLVAK 294
             +KS+A     H++M   A  R       A +++ NPTHYA+ L Y   +   P ++ K
Sbjct: 235 GHRKSLA-----HELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFK 289

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           G++  A+++   A + +IP+     L R+L++  P    IP    +AVAQ +Y++  +
Sbjct: 290 GEDSAARELIAQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQ-VYRVLRQ 346


>gi|82470755|gb|ABB77407.1| HrcU [Pantoea stewartii subsp. stewartii]
          Length = 360

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 166/354 (46%), Gaps = 21/354 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  ++     G+  + + + + L  
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVMALDDVGMQKLQALMMLPLMR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL------IQRIPVLNLNH 122
             Q   + +S          L+ S L+I      +   + + L      IQ  P+     
Sbjct: 63  LNQPFEQVLSE---------LAGSALLIVSTFFGITVAVAALLRIIGGWIQYGPLFATEA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +KP F R++     ++++S+  L + + S +K   + TI  + L+ +  ++      + +
Sbjct: 114 LKPDFNRLNPVNQFRQMFSVKKLTDMLSSMLKAAAICTIFILVLSTDLESLSRLAYGDLN 173

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S        + +V    LL +  +T+LD G   + +  + +MS Q+I+DE KQS G+P +
Sbjct: 174 SFWPAVEVLLTRVSRQTLLTLLIMTLLDFGLQKYYFLKQQRMSHQDIRDEHKQSEGDPHM 233

Query: 243 KNRQKSIARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           K  + ++A+  +   +     E   +A +++ NPTHYA+AL Y       P ++ KG++ 
Sbjct: 234 KGHRHAVAQELLNAPVQAVKREPLEKADLLLVNPTHYAVALYYRPELTPLPRIICKGEDS 293

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            AK +   A +  IP+     LAR+L+ Q      IP    +AVA+ +Y++  +
Sbjct: 294 DAKTLIVRAQQAKIPVIRFIWLARTLY-QSQEGQLIPRHTLQAVAR-VYRVLRE 345


>gi|167589635|ref|ZP_02382023.1| type III secretion exporter [Burkholderia ubonensis Bu]
          Length = 343

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 48/360 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + PS+K++ +A  +G+ P S E    SS          FF     ++   L  L   
Sbjct: 3   EKNQKPSAKRLREAREKGDVPKSAET--ISSA---------FFVGACVALAVGLGALF-- 49

Query: 69  ATQRKLEDISHIVFL----------LTHLSLSASR--------LVIPGLLLFMMFGIGSY 110
               +L+ +  +VF           L  L  SA+R        +V  GL+L ++ G    
Sbjct: 50  ---ERLQGLFRLVFDAAGAADPGARLAALVGSAARDWMTLSAEIVGAGLMLGLLAG---- 102

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
            +Q   V+  + + P   R++  EG+K + S+ N+VN +K  +K +L+   +   + E+ 
Sbjct: 103 FVQVGGVMAWSRLVPQLSRLNPAEGLKNMASLRNVVNLVKMLLKTVLLVATLGWLIVESL 162

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSK 226
              +      P SIL      + K+L+++  + A     + ++DI   +H++  K+KMS 
Sbjct: 163 DPAVQSGFTRPMSILA----LIVKLLMLLFGWAALVYVVMAIIDIVHQHHEFNKKMKMSI 218

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
            E++ E K   G+P I+ +++ +AR      + +    A++++ + +  A+AL Y     
Sbjct: 219 DEVRREHKDDEGDPHIQAKRRQLARELQYASLQDRIDFASVVVYS-SRVAVAL-YYGGMG 276

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             P ++A+G+   A+++ ++A +   P      LA++L+   P N  I P  ++ VA L+
Sbjct: 277 SLPWVLARGEGEAAERIVRLARDALRPTLANVGLAQALYDSTPENGTIQPRHFREVAALL 336


>gi|167584007|ref|ZP_02376395.1| type III secretion system protein [Burkholderia ubonensis Bu]
          Length = 361

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 138/265 (52%), Gaps = 4/265 (1%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L  L+ SA+  ++P ++  ++ GI S   Q   ++ L  V P F  ++   GIKRI+S+ 
Sbjct: 77  LHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITLEPVMPKFDALNPMNGIKRIFSLK 136

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
           +L+  +K  VK +++  +I   +T + F ++      P   L    +TV   L+ +++ +
Sbjct: 137 SLLELVKMIVKAVVLACVIWKMMT-SLFPLVVASVYEPTPQLSRVLWTVLMKLLGVVVLV 195

Query: 204 AT-LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS-RIRHKMMEA 261
                  D   +   +    +M+K+E K E K+S G+P  K  ++ +AR         + 
Sbjct: 196 VVVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAPPRQK 255

Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
             +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   P +A
Sbjct: 256 VGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGNPPVA 315

Query: 322 RSLFKQVPINSAIPPVFYKAVAQLI 346
           R+L++ V  ++AIP   ++ VA ++
Sbjct: 316 RALYR-VERDAAIPEELFETVAAIL 339


>gi|313639087|gb|EFS04065.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL S4-171]
          Length = 134

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 79/126 (62%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPTH ++ +RY +
Sbjct: 1   MSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDK 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            ++ AP L+AKG++ +A  +R++A    +P+     LARS++     +  I    YK V 
Sbjct: 61  AKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI 120

Query: 344 QLIYKI 349
           +++ ++
Sbjct: 121 EVMKEL 126


>gi|27376933|ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
 gi|12620529|gb|AAG60805.1|AF322012_110 RhcU [Bradyrhizobium japonicum]
 gi|27350075|dbj|BAC47087.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
          Length = 345

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 158/350 (45%), Gaps = 25/350 (7%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + K   P+ KK+ DA  +G +  +R + L S + AC  +   ++  G         V L 
Sbjct: 6   EEKKLPPTPKKLRDARKKGQS--ARSSDLVSGVSACAGFGCLWWRAGAIEDKWQETVRLV 63

Query: 68  SATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFM----MFGIGSYLIQRIPVLNLN 121
              Q +     +   +  L  LS++    ++   +       +   G ++    P+    
Sbjct: 64  DKLQEQPFTSAVPQALSGLLELSIATVAPLLAAAVTAALLANVLANGGFMFASEPL---- 119

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
             KP  +++   +G+KRI S  + +   K+  K++L+G I  +++T ++  ++       
Sbjct: 120 --KPKLEKLDPIKGLKRIVSKRSAIELGKTLAKVVLLGAIFFLTVTASWKALVYLPVCGM 177

Query: 182 HSILYHAFFTVRKVLIMIL---LFIATLTVLDIG-WSYHQWYSKLKMSKQEIKDEIKQSY 237
               +   FT  K+LI I      +  L  L I  W + Q    ++M++ E K E K+  
Sbjct: 178 GCFGF--VFTEVKLLIGIAAGAFLVGGLADLLIQRWLFMQ---DMRMTETEAKRENKEQQ 232

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K   + + R    ++     SRAT+I+  P    + LRY++ E   PVLV +G+ 
Sbjct: 233 GNPQVKREHRRL-RQESANEAPLGISRATLILRGPATL-IGLRYVRGETGVPVLVCRGEG 290

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
             A ++   A    + I E+  LAR L  +  + + +P  ++++VA+ +Y
Sbjct: 291 EAASQLLGEARALRLNIVEDNVLARQLLGKARLGNPVPSQYFESVAKALY 340


>gi|213162120|ref|ZP_03347830.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 272

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 100 LLFMMFGI-----GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
           LLF+  G+     GS  +Q   V+    +    + ++     K+I+S++++V   KS +K
Sbjct: 6   LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLK 65

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL----IMILLFIATLTVLD 210
           +I++  I        Y+    F  A P+  L      V  ++    + ++ F   + +LD
Sbjct: 66  VIMLSLIFAFFF---YYYASTF-RALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILD 121

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
             + Y++    LKMSK ++K E K   G+P +K R++ +        + ++  ++  ++ 
Sbjct: 122 YSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVR 181

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ E   LARSLF +V  
Sbjct: 182 NPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVER 241

Query: 331 NSAIPPVFYKAVAQLI 346
              IP   ++ VA L+
Sbjct: 242 GDKIPETLFEPVAALL 257


>gi|271500418|ref|YP_003333443.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii
           Ech586]
 gi|270343973|gb|ACZ76738.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii
           Ech586]
          Length = 359

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 165/350 (47%), Gaps = 13/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+SKK++DA  +G    S++        A L  +L     G+    S L  L+  
Sbjct: 3   EKTEKPTSKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDNGM----SKLQALMQL 58

Query: 69  ATQRKLEDISHIV--FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              R  +   H         LSL ++  ++   +  +M  +G + IQ  P+  +  +K  
Sbjct: 59  PLSRLSDPFVHAADEVFSEALSLLSTFCLLTISVALLMRIVGGW-IQYGPLFAVEALKID 117

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F R++    IK+++++  L + + S +K   +G +  + +      +++    +  +   
Sbjct: 118 FNRLNPVNQIKQMFTMRKLTDMLTSILKATTIGLVFWLVVIPQLEWLVELAYGDLTAFWK 177

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ V    L  +  L +LD G   + +  + +MS ++I++E K S G+P +K  +
Sbjct: 178 GVESVLKSVARTTLSSLLALAILDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHR 237

Query: 247 KSIARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           KS+A+  +      +       A +++ NPTHYA+AL Y   +   P ++ KG++  AK 
Sbjct: 238 KSVAQEILNEPASPRAKPNIEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDEQAKA 297

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +   A   N+P+     LAR+L++ VP    IP    ++VAQ +Y++  +
Sbjct: 298 LIARAQHANVPVIRFIWLARTLYR-VPEGHYIPRHTLQSVAQ-VYRVLRQ 345


>gi|213416632|ref|ZP_03349776.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 338

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 100 LLFMMFGI-----GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
           LLF+  G+     GS  +Q   V+    +    + ++     K+I+S++++V   KS +K
Sbjct: 72  LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLK 131

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL----IMILLFIATLTVLD 210
           +I++  I        Y+    F  A P+  L      V  ++    + ++ F   + +LD
Sbjct: 132 VIMLSLIFAFFF---YYYASTF-RALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILD 187

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
             + Y++    LKMSK ++K E K   G+P +K R++ +        + ++  ++  ++ 
Sbjct: 188 YSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVR 247

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ E   LARSLF +V  
Sbjct: 248 NPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVER 307

Query: 331 NSAIPPVFYKAVAQLI 346
              IP   ++ VA L+
Sbjct: 308 GDKIPETLFEPVAALL 323


>gi|238785152|ref|ZP_04629146.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri
           ATCC 43970]
 gi|238713967|gb|EEQ05985.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri
           ATCC 43970]
          Length = 332

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
           K+++S+ +L    KS +K+ ++ T+I   L  +Y   L +++          F T+   L
Sbjct: 107 KQLFSLRSLFELTKSLLKVGVL-TLIFGYLLMHYAASLGYLAYCGSQCAIPVFATLMGWL 165

Query: 197 IMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
           +  L+      +++D  +  +    +LKMS +E+K E K+S G+P IK +++ + +    
Sbjct: 166 LGALIACYMVFSLMDYAFQRYNTMKQLKMSLEEVKREYKESDGDPHIKQKRRQLQQEVQS 225

Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
               +   RAT ++ NPTH+A+ L Y   +   PV++ KG    A  + K+A +  IP+ 
Sbjct: 226 GSFAKNVQRATAVVRNPTHFAVCLLYHPEDAPLPVVIEKGHGERAALIIKLAEQQGIPVV 285

Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAV 342
           E  +LAR+L   V     IP  F++ V
Sbjct: 286 ENIALARALHHGVACGETIPEQFFEPV 312


>gi|146305090|ref|YP_001185555.1| YscU/HrpY family type III secretion protein [Pseudomonas mendocina
           ymp]
 gi|145573291|gb|ABP82823.1| type III secretion protein, YscU/HrpY family [Pseudomonas mendocina
           ymp]
          Length = 359

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 164/352 (46%), Gaps = 24/352 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++ S    +L  L+     +S    SV    H L+A 
Sbjct: 3   EKTEKATPKQLRDAREKGQIAQSQDVS---KLLILLMVSEITWSLATESVQRLQH-LMAL 58

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP--------VLNL 120
           A     +    IV  L   +++        LL F++F +G  ++ R+         +   
Sbjct: 59  AINATGQPFLRIVGQLVDEAVTV-------LLGFLIFSVGVAMVMRLAGGWAQFGFLFAP 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  F +++    +K+++S  NL N + S +K  ++G  + + L     T++   +++
Sbjct: 112 KALKIDFNKLNPFPQLKQMFSAQNLTNLLMSILKAAVIGITLYVLLWPELGTLILLANSD 171

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +         R +L   L  +  L  +D G   +    KL+MSK ++K E KQS G+P
Sbjct: 172 LDTYWQSLMEVFRYILRCTLGLLLVLAAVDFGLQKYFHAKKLRMSKDDVKKEYKQSEGDP 231

Query: 241 IIKNRQKSIARSRIRHKMMEAT---SRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           ++K +++ +A   +      A      A +++ NPTHYA+AL Y   +   P++  KG++
Sbjct: 232 MVKGQRRQLAHELLNQPPSTAARPVEEADMLVVNPTHYAVALYYRPGKTPLPMIHCKGED 291

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             A  +   A +  IP+ +   LAR+L+K V     IP    +AVA  IY++
Sbjct: 292 EDALALIARAKKARIPVVQSVWLARTLYK-VNAGRHIPRPTLEAVAH-IYQL 341


>gi|237678814|emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii]
          Length = 345

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 160/357 (44%), Gaps = 39/357 (10%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + K   P+ KK+ DA  +G +  +R A L S + AC      ++  G  ++    H    
Sbjct: 6   EEKKLPPTPKKLRDARKKGQS--ARSADLVSGVSACAGLSCLWWRAG--AIEDKWH---- 57

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP----------- 116
             T R ++ +    F       SA    + GLL   +  +G  L   +            
Sbjct: 58  -ETVRLIDKLQEQPFT------SAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANG 110

Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             ++ L  +KP  +++   +G+ RI S  + +   K+ VK++L+GT    ++T ++  ++
Sbjct: 111 GFMIALEPLKPKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALV 170

Query: 175 DFISANPHSILYHAFFTVRKVLIMIL---LFIATLTVLDIG-WSYHQWYSKLKMSKQEIK 230
                      +   FT  K+L  I      +  LT L I  W + Q   +++M++ E K
Sbjct: 171 YLPVCGMGC--FGLVFTEVKLLAGIAGGAFLVGGLTDLLIQRWLFLQ---EMRMTETEAK 225

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K+  GNP +K   + + R    ++      RA +I+T  T   + LRY++ E   P+
Sbjct: 226 RENKEQQGNPQVKREHRRL-RQESANEAPLGVHRANLILTGSTTL-VGLRYVRGETGVPI 283

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           LV +G++  A K+   A    + + ++  LAR L     + + +P  +++AVA+ +Y
Sbjct: 284 LVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAKLGNPVPSQYFEAVAKALY 340


>gi|213618546|ref|ZP_03372372.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 261

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 134/260 (51%), Gaps = 7/260 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMME 260
            +K + + + R+  + +MME
Sbjct: 239 HVKGKIRQMQRAAAQRRMME 258


>gi|167841178|ref|ZP_02467862.1| secretion system apparatus protein SsaU [Burkholderia thailandensis
           MSMB43]
          Length = 359

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 162/354 (45%), Gaps = 25/354 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK  DA  +G    S E +  + +   L Y LF             H++ A 
Sbjct: 3   EKTEQPTAKKRADARRKGQVAKSVEITSGAQLAVLLGYFLF----------EGPHLMQAF 52

Query: 69  AT-QRKLEDI--SHIVFLLTH----LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            T  R   D+    +V  L H    L    +R VI   L+ +   + + + Q  P+L   
Sbjct: 53  ETLTRASIDVINDDLVTALGHWLGVLGAVVTRFVIGLALVVIGVTVIAVVAQIGPLLASE 112

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +KPS  +++     K+++S+ +L  F KS  K+ ++ ++I   L   Y   L F+   P
Sbjct: 113 ALKPSVDKINPINNAKQMFSMKSLFEFAKSLFKVGVL-SLIFYYLIREYAPSLQFL---P 168

Query: 182 HSILYHAF-FTVRKVLIM---ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
              +   F  +VR +  M   ++ F     + D  +  +    +L MS ++IK E K S 
Sbjct: 169 LCSVECGFAVSVRLLYWMWAALIGFYVLFGLADFAFQRYNTTKQLMMSIEDIKQEFKNSE 228

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K+++K I R      +    +++T+++ NPTH A+ L Y       P +V  G  
Sbjct: 229 GNPEMKHKRKEIHREVQSGSLASNVAKSTVVVRNPTHVAVCLYYDPIAAPLPEVVETGHG 288

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A  +  +A    +P+ E   +AR+L  ++ +   IPP  ++ VA ++  + H
Sbjct: 289 KRALHIVALAERAGVPVVENVPVARALAARLAVGQVIPPDLFEPVAHILRLVMH 342


>gi|14588842|emb|CAA68101.2| HrcU protein [Pantoea agglomerans]
          Length = 360

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 170/353 (48%), Gaps = 25/353 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTEKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62

Query: 69  ATQ---RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             Q   + + +++    LL       + + +  LL      IG + IQ   ++    +KP
Sbjct: 63  LNQPFEQAVNEVAGSALLLVTTFFGIT-VAVAALLRI----IGGW-IQYGLLIAPETIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F R++     K+++S+  L + + + +K   + TI  + L  +    LD +S   +  L
Sbjct: 117 DFNRLNPMNQFKQMFSVKKLTDMLNNILKAAAICTIFYLVLNPD----LDALSRLAYGDL 172

Query: 186 YHAFFTVRKVLI-----MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +F+   +V++       LL +  LT+LD G   + +  + +MS  +I+DE KQS G+P
Sbjct: 173 -DSFWPAVEVMLTRVSRQTLLTLLILTLLDFGLQKYFFLKQQRMSHHDIRDEYKQSEGDP 231

Query: 241 IIKNRQKSIARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K  + ++A+  +         E   +A +++ NPTHYA+AL Y       P +V KG+
Sbjct: 232 HMKGHRHAVAQELLNAPASPVKREPLEKADLLLVNPTHYAVALYYRPALTPLPRIVCKGE 291

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  AK +   A + NIP+     LAR+L++       IP    +AVAQ +Y++
Sbjct: 292 DNEAKTLIARAQKANIPVIRFVWLARTLYRSEE-GQLIPRHTLQAVAQ-VYRV 342


>gi|107025878|ref|YP_623389.1| type III secretion exporter [Burkholderia cenocepacia AU 1054]
 gi|116692938|ref|YP_838471.1| type III secretion exporter [Burkholderia cenocepacia HI2424]
 gi|105895252|gb|ABF78416.1| type III secretion exporter [Burkholderia cenocepacia AU 1054]
 gi|116650938|gb|ABK11578.1| type III secretion exporter [Burkholderia cenocepacia HI2424]
          Length = 343

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 164/360 (45%), Gaps = 48/360 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE------------------ASLFSSILACLIYLLFF 50
            K + P++K++ +A  +G+ P S E                   SLF+ + A  ++ L F
Sbjct: 3   EKDQKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA--LFRLVF 60

Query: 51  FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
            + G    ++ L  L+  A +      + IV       L A  + + G            
Sbjct: 61  DAVGAADPSARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGG------------ 108

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                 V+  + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+ 
Sbjct: 109 ------VMAWSRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESL 162

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSK 226
              +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS 
Sbjct: 163 DPSVQSGFTRPASILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSI 218

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
            E++ E K+  G+P I+ +++ +AR      + +    A++++ +P   A+AL Y     
Sbjct: 219 DEVRREHKEDEGDPHIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMG 276

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             P ++A+G+    +++ ++A +   P      LA++L++  P N  I P  ++AVAQL+
Sbjct: 277 SLPWVLARGEGDAGERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLL 336


>gi|261344588|ref|ZP_05972232.1| type III secretion system protein BsaZ [Providencia rustigianii DSM
           4541]
 gi|282567502|gb|EFB73037.1| type III secretion system protein BsaZ [Providencia rustigianii DSM
           4541]
          Length = 361

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 166/346 (47%), Gaps = 24/346 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI+D+  +G +  S++    ++I+  +  L+   +  +Y +   +  +L  
Sbjct: 3   EKTEKPTDKKIKDSAKKGQSFKSKDT--VAAIVLVVGALVIDGAASLYELGGLMKRILLH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                  DI HI  LL   S     LV+P L+   + G    L+Q    L    +K  F 
Sbjct: 61  PY-----DI-HIDNLLWQFSKIFLSLVLPILIACFLSGTIVSLLQSRFRLATEAIKIDFT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT-------MLDFISANP 181
           +++   G K+I+S+N+L    K  +K IL   + +IS    +F        ML   + N 
Sbjct: 115 KLNPIAGFKKIFSLNSL----KELIKAILYLLVFSIS-AATFFVVWRQEIFMLYRTTING 169

Query: 182 HSILYHAFFTVRKVLIMILLFIAT-LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +  ++ T+  + + + L +A  + V+D    +  +   LKM KQE+K E K + G+P
Sbjct: 170 ---MMSSWVTLCILFVFVFLAVAVFIVVIDAIAEFFLFIKNLKMEKQEVKKEFKDNEGDP 226

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK+ +K + +  +  ++      +T I+ NPTH A+ + Y       P L+AK + + A
Sbjct: 227 HIKSARKGLHQEILSEEVKSNVRNSTFIMANPTHIAMLIYYDSNIAPLPFLMAKMRGVQA 286

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           K + K A +  +P+  +  LAR +++    +S I     ++V Q+I
Sbjct: 287 KAIIKYAQQQGVPVVRDIILARQIWRTYKKDSFIDDQGLQSVMQII 332


>gi|238787480|ref|ZP_04631278.1| Type III secretion protein, YscU/HrpY family [Yersinia
           frederiksenii ATCC 33641]
 gi|238724267|gb|EEQ15909.1| Type III secretion protein, YscU/HrpY family [Yersinia
           frederiksenii ATCC 33641]
          Length = 321

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 125/253 (49%), Gaps = 4/253 (1%)

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
           ++ G L+ M    G  + Q  P+L    V+   + ++     K+++S+++L    KS +K
Sbjct: 55  ILGGALVLMTLLSG--IAQVGPLLATKAVEFKGEHINPINNAKQLFSLHSLFELSKSLLK 112

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK-VLIMILLFIATLTVLDIGW 213
           + ++ T+I   L   Y     +++    S     F T+   +L  ++      +++D  +
Sbjct: 113 VGVL-TLIFGYLLIRYAPSFGYLAYCGSSCAIPVFTTLMSWILGALIACYVVFSLMDYSF 171

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
             +    +LKMS  E+K E K S G+P IK +++ + +        +   R+T ++ NPT
Sbjct: 172 QRYNTMKQLKMSHDEVKREHKDSDGDPHIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPT 231

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
           H+A+ L Y   +   P+++ KG    A  + KIA +  IP+ E  +LAR+L + V   + 
Sbjct: 232 HFAVCLFYHADDAPLPIVIEKGTGERAALIVKIAEQQGIPVVENITLARALHRDVDCGNT 291

Query: 334 IPPVFYKAVAQLI 346
           IP   ++ VA ++
Sbjct: 292 IPESLFEPVAAIL 304


>gi|254575135|gb|ACT68036.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 365

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 16/321 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL---FFFSPGIYSVTSDLHVL 65
            KTE P+SKK +D+  +G    S++  + + IL   IY L     F P I   T  L   
Sbjct: 3   EKTEQPTSKKRKDSAKKGQTFKSKDV-ITTVILLVGIYFLAHAVSFGPFISFYTHLLQYT 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                   L D++ I F           L +P + +  + G  + L+Q    L    +K 
Sbjct: 62  TRPGMGVFLLDLARIFF----------TLALPFIAVCTLVGFAATLLQTGFTLATEAIKL 111

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHSI 184
           +FK ++  EG+K+I+S+  +   +KS   +++        + ++    L    A+ P  +
Sbjct: 112 NFKALNPVEGVKKIFSMRTVKELVKSLCYLVVFAATCHSLIQQDLRQALTLYRADMPGLV 171

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                  ++ V++ I   I  L + D+   Y   +  +KM K E+K E K+S GNP IK+
Sbjct: 172 AVWVALALKAVMVFIAWSIFVL-LADLLVEYFLHFKDMKMDKHEVKQEHKESDGNPQIKS 230

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            ++   +  +  + M A   + +++ NPTH A+A+ +       P +  +  NL AK   
Sbjct: 231 ARRRTHQDLLSGEEMAAVRNSEVVLANPTHIAMAVYFNPEVASLPFIALRCTNLKAKAAI 290

Query: 305 KIAYEHNIPIFEEPSLARSLF 325
             A +  +P+     L R L+
Sbjct: 291 AYAEKIGVPVVRNIPLTRRLY 311


>gi|51103122|gb|AAT96265.1| hrcU [Pseudomonas viridiflava]
          Length = 361

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 160/350 (45%), Gaps = 12/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P+ KK++DA  +G    S++   LF  I A L+ ++     G  S    L  L  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDVPKLF--IFAALMEMILGLVDGGMSRLKALIALPL 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +   R     + +  +LT         ++P L +     +    +Q  P+   + +K  F
Sbjct: 61  TELDRPFN--AALGEVLTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDF 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++     K+++S   L N   S  K +++  ++ + L      ++     +  S    
Sbjct: 119 ERLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMA 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  +    L  +  L  LD     + +    +MS ++I+ E K+S G+P +K+ +K
Sbjct: 179 LVELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRK 238

Query: 248 SIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++AR         A +RA +     ++ NPTH+A+AL Y   +   P ++ KG++  A++
Sbjct: 239 ALAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEARE 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           + + A E  +P+     LAR+L+++  +   IP    +AVAQ +Y++  +
Sbjct: 299 LIERAREAGVPVVRFVWLARTLYREN-VGQFIPRATLQAVAQ-VYRLLRE 346


>gi|254250203|ref|ZP_04943523.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
 gi|124876704|gb|EAY66694.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
          Length = 343

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 164/360 (45%), Gaps = 48/360 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE------------------ASLFSSILACLIYLLFF 50
            K + P++K++ +A  +G+ P S E                   SLF+ + A  ++ L F
Sbjct: 3   EKDQKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA--LFRLVF 60

Query: 51  FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY 110
            + G     + L  L+  A +      + IV       L A  + + G            
Sbjct: 61  DAVGAADPAARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGG------------ 108

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
                 V+  + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+ 
Sbjct: 109 ------VMAWSRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESL 162

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSK 226
              +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS 
Sbjct: 163 DPSVQSGFTRPASILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSI 218

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
            E++ E K+  G+P I+ +++ +AR      + +    A++++ +P   A+AL Y     
Sbjct: 219 DEVRREHKEDEGDPHIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMG 276

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             P ++A+G+   A+++ ++A +   P      LA++L++  P N  I P  ++AVAQL+
Sbjct: 277 SLPWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLL 336


>gi|218515300|ref|ZP_03512140.1| flagellar biosynthesis protein FlhB [Rhizobium etli 8C-3]
          Length = 151

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+++K  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 31  DDDKDSKTEAPTARKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 90

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 91  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 150

Query: 124 K 124
           +
Sbjct: 151 R 151


>gi|254439657|ref|ZP_05053151.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307]
 gi|198255103|gb|EDY79417.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307]
          Length = 176

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 5/149 (3%)

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA-----RSRIRHKMMEAT 262
           + D+ W  +Q   + KM+ QE+KDE K++ G+P +K + + +      R++ R   M+  
Sbjct: 1   MFDVVWQQYQHNQEQKMTLQEVKDESKETEGSPELKAKIRRLQMTAGKRAKERRAAMDKV 60

Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322
             +T IITNPTH+A+AL+Y      AP ++A G+   A ++ +I  E  + +F    LAR
Sbjct: 61  PTSTAIITNPTHFAVALKYEVGTPGAPEILAMGRGHQAHEIIRIGTESGVTVFRNELLAR 120

Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +LF    I   IP   Y AVA ++  IY 
Sbjct: 121 ALFFAGNIGEEIPSPLYTAVASVLAFIYQ 149


>gi|330876191|gb|EGH10340.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 348

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 164/362 (45%), Gaps = 44/362 (12%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + K++  + KK+ DA  +G   +++   L S ++  L  L              + 
Sbjct: 2   GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46

Query: 64  VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
           VLL  A A    L D++ +++          LL H    A ++VI   L  + F +G+ +
Sbjct: 47  VLLPKARAQVEALIDLTALIYIEPFAEVWPRLLDH----AEQIVIGITLPVVAFTVGAVI 102

Query: 112 I-----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           +      R  V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +  
Sbjct: 103 LTNIVTMRGVVFSVEPIQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVG 162

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKL 222
            +    +++  S      +   F+ V K L+  +    L +  + VL   W + +   ++
Sbjct: 163 RQALQALMES-SRCGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EM 218

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           KMS  E K E K   G+P+IK  ++   R            RA+++I +   + + +RY+
Sbjct: 219 KMSHSEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYV 278

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + E   P++V +     +  +   A    I  + + SLA ++ ++      +P   ++AV
Sbjct: 279 RGETPVPIVVCRAAPHDSAALLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAV 338

Query: 343 AQ 344
           A 
Sbjct: 339 AD 340


>gi|237800778|ref|ZP_04589239.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023636|gb|EGI03693.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 348

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 165/362 (45%), Gaps = 44/362 (12%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + K++  + KK+ DA  +G   +++   L S ++  L  L              + 
Sbjct: 2   GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46

Query: 64  VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
           VLL  A A    L D++ +++          LL H    A ++VI   L  +   +G+ +
Sbjct: 47  VLLPRARAQVEALIDLAALIYIEPFNDVWPRLLDH----AEQIVIGITLPVVAVTVGAVI 102

Query: 112 IQRIP-----VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           +  I      V ++  V+P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +  
Sbjct: 103 LTNIVTMKGVVFSVEPVQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVMLLGLAFYVVG 162

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKL 222
            +    +++  S      +   F+ V K L+  +    L +  + VL   W + +   ++
Sbjct: 163 RQALQALMES-SRCGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EM 218

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           KMS  E K E K   G+P+IK  ++   R           +RA+++I +   + + +RY+
Sbjct: 219 KMSHSEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYV 278

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + E   P++V +     +  +   A    I ++ + +LA S+ K+      +P   ++AV
Sbjct: 279 RGETPVPIVVCRAAQHESAVLLAEATPLGIAVWPDAALAESIAKRSVAGDPVPENTFQAV 338

Query: 343 AQ 344
           A 
Sbjct: 339 AD 340


>gi|148645118|gb|ABR01083.1| FlhB [uncultured Geobacter sp.]
 gi|148645120|gb|ABR01084.1| FlhB [uncultured Geobacter sp.]
          Length = 114

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 70/113 (61%)

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE K   G+P +K++ K +   +   ++ +    A +IITNPTH+A+AL+Y +   
Sbjct: 1   QEVKDEHKDMEGDPQVKSKIKGLQFQKAFQRLQKIIPTADVIITNPTHFAVALKYDRDRM 60

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
            APV++AKG + +A++++ +A E+NI + E   LAR L+ QV     IP   Y
Sbjct: 61  AAPVVIAKGADFMAQRIKALARENNITLVENRFLARELYAQVKEGEEIPEALY 113


>gi|229588264|ref|YP_002870383.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360130|emb|CAY46987.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 365

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 172/354 (48%), Gaps = 21/354 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+ + K  A S+KK+ D   +G    S++ +   ++ A     LF     +      + 
Sbjct: 2   SDSGEKKHPA-SAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLML 60

Query: 64  VLLASATQ---RKLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           + L+  TQ   R LE++      VF    L +    +    +  +M FG+         +
Sbjct: 61  LPLSRLTQPFTRALEEVLFEGMTVFFSFALLMVGVAITTKLISSWMQFGL---------L 111

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                +K  F R++    +K+++S   L+N + S  K  L+ +I+ + +  +  T+++  
Sbjct: 112 FAPETLKLDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLGTLINLA 171

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +++  S +       R +L + L  +  L ++D+    H +  +++M++ E+  E K   
Sbjct: 172 TSDLQSYILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDME 231

Query: 238 GNPIIKNRQKSIARSRIRHK---MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           G+P +K +++S+A    + +    +     + +++ NPTH+A+AL Y   +   P+LV+K
Sbjct: 232 GDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSK 291

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           G +  A+ + + A   ++P+ +   LAR+L+ +  + ++IP    +AVA LIY+
Sbjct: 292 GTDDEARTLIRRAKAADVPVIQCVWLARTLYTK-KLGASIPRETLRAVA-LIYR 343


>gi|238793341|ref|ZP_04636967.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia
           ATCC 29909]
 gi|238727310|gb|EEQ18838.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia
           ATCC 29909]
          Length = 332

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
           K+++S+ ++    KS +K+ ++ T+I   L  +Y     +++          F T+   L
Sbjct: 107 KQLFSLRSVFELTKSLLKVGVL-TLIFGYLLLHYAVSFGYLAYCGSRCAIPVFATLMSWL 165

Query: 197 IMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
           +  L+      +++D  +  +    +LKMS +EIK E K S G+P IK +++ +      
Sbjct: 166 LGALVACYVVFSLMDYAFQRYNTMKQLKMSLEEIKREHKDSNGDPHIKQKRRQLQHEEQS 225

Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
               +   R+T ++ NPTH+A+ L Y   +   PV++ KG    A  +  +A E  IP+ 
Sbjct: 226 GSFAKNVRRSTAVVRNPTHFAVCLFYHADDAPLPVVIEKGHGEQAALIIALAEEQGIPVV 285

Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAV 342
           E  +LAR+L + V     IP  F++ V
Sbjct: 286 ENIALARALHRDVACGDTIPEQFFEPV 312


>gi|293416348|ref|ZP_06658987.1| hypothetical protein ECDG_03102 [Escherichia coli B185]
 gi|291431704|gb|EFF04687.1| hypothetical protein ECDG_03102 [Escherichia coli B185]
          Length = 362

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 154/327 (47%), Gaps = 26/327 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K+ E+A  +G +  SR+      I+ACL      +   + S+ S + VL  +
Sbjct: 4   NKTEKPTRKRREEAARKGQSFRSRDF-----IVACLTLGGTAYLASVASLRSLMEVLGQA 58

Query: 69  AT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +   Q  + D +  VF       S  ++++P L L +       ++Q   VL    ++P
Sbjct: 59  VSFHFQINIADYTEQVFC------SGMKIILPFLALCLFCSALPSILQTGFVLATKALQP 112

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT---ENYFTMLDFISAN-- 180
               +   +GIK+I+S+  +   +K+   I+ +G+ I   +    EN   +   ++ N  
Sbjct: 113 RLSALDPTKGIKKIFSLRTVKEAVKA---ILYLGSFIISGMLFWFENKRLVFSQVNGNLF 169

Query: 181 -PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               +  H  F++   + + L     + +LD    Y      +KM K+E+K E+K++ GN
Sbjct: 170 VVADVWRHLLFSL---VALCLGCSVIILLLDALAEYFLVMKDMKMDKEEVKREMKETEGN 226

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K+R++ I    +  ++      + +II NPTH A+ + +       P++  +  N  
Sbjct: 227 PEVKSRRREIHMDILSEQIKSDIDNSRLIIANPTHIAVGIYFKPEIAPYPLISVREANQR 286

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFK 326
           A  +R+ A +  IP+  +  LAR +FK
Sbjct: 287 ALAVRQYAEKVGIPVVVDIRLARRIFK 313


>gi|51103164|gb|AAT96306.1| HrcU [Pseudomonas viridiflava]
          Length = 361

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 12/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P+ KK++DA  +G    S++   LF  I A L+ ++     G  S    L  L  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDVPKLF--IFAALMEMILGLVDGGMSRLKALIALPL 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +   R     + +  +LT         ++P L +     +    +Q  P+   + +K  F
Sbjct: 61  TELDRPFN--AALGEVLTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDF 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++     K+++S   L N   S  K +++  ++ + L      ++     +  S    
Sbjct: 119 ERLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMA 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  +    L  +  L  LD     + +    +MS ++I+ E K+S G+P +K+ +K
Sbjct: 179 LVELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRK 238

Query: 248 SIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++AR           +RA +     ++ NPTH+A+AL Y   +   P ++ KG++  A++
Sbjct: 239 ALAREITDQPGSAVPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDAEARE 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           + + A E  +P+     LAR+L+++  +   IP    +AVAQ +Y++  +
Sbjct: 299 LIERAREAGVPVVRFVWLARTLYREN-VGQFIPRATLQAVAQ-VYRLLRE 346


>gi|15042145|gb|AAK81926.1|AF292566_10 RscU [Pseudomonas fluorescens]
          Length = 365

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 172/354 (48%), Gaps = 21/354 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+ + K  A S+KK+ D   +G    S++ +   ++ A     LF     +      + 
Sbjct: 2   SDSGEKKHPA-SAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLML 60

Query: 64  VLLASATQ---RKLEDI---SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           + L+  TQ   R LE++      VF    L +    +    +  +M FG+         +
Sbjct: 61  LPLSRLTQPFTRALEEVLFEGMTVFFSFALVMVGVAITTKLISSWMQFGL---------L 111

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                +K  F R++    +K+++S   L+N + S  K  L+ +I+ + +  +  T+++  
Sbjct: 112 FAPETLKLDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLDTLINLA 171

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +++  S +       R +L + L  +  L ++D+    H +  +++M++ E+  E K   
Sbjct: 172 TSDLQSYILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDME 231

Query: 238 GNPIIKNRQKSIARSRIRHK---MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           G+P +K +++S+A    + +    +     + +++ NPTH+A+AL Y   +   P+LV+K
Sbjct: 232 GDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSK 291

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           G +  A+ + + A   ++P+ +   LAR+L+ +  + ++IP    +AVA LIY+
Sbjct: 292 GTDDEARTLIRRAKAADVPVIQCVWLARTLYTK-KLGASIPRETLRAVA-LIYR 343


>gi|85060059|ref|YP_455761.1| surface presentation of antigens protein SpaS [Sodalis glossinidius
           str. 'morsitans']
 gi|45504778|gb|AAS66868.1| SpaS [Sodalis glossinidius]
 gi|84780579|dbj|BAE75356.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 352

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 150/320 (46%), Gaps = 14/320 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS--DLHVLL 66
           NKTE P+ K++ DA  +G A  SR+      I+AC++        G+  +TS   L  L+
Sbjct: 3   NKTEKPTPKRLRDAAKKGQAFKSRDV-----IIACMMLC------GVCWLTSFTSLESLM 51

Query: 67  ASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
               Q  + + S  +      L  +A ++++P + + ++      L+Q   +L     K 
Sbjct: 52  DLYRQMVVGNFSLSLTAYRNALMFTALQILLPIIAMGIVASALPLLLQTGFMLATRAFKL 111

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F+ ++   GIK+I+S+    + +K+ + +      + I    +   + + + ANP  I+
Sbjct: 112 NFQALNPTRGIKKIFSLRTAKDCVKALLYLAAFAIALMIVWRTHRQLLFEQLFANPQDIV 171

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  +++  LL I  + +LDI   Y      LKM KQE++ E+K+  G+P IK+R
Sbjct: 172 AIWRQLLMSLVLTCLLCIVCIVILDIVAEYFLHLRSLKMDKQEVRREMKEQEGDPEIKHR 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++      +  +       + +II NPTH A+ + +       P +    +N  A  +R 
Sbjct: 232 RREAHMEILSEQTQADIKGSQLIIANPTHLAVGIYHNPDLTPLPFISVLERNQRALAVRD 291

Query: 306 IAYEHNIPIFEEPSLARSLF 325
            A +  + + E+  LAR ++
Sbjct: 292 YAKKVGVSVIEDVQLARRIY 311


>gi|182440974|dbj|BAG24099.1| HrcU [Pseudomonas cichorii]
          Length = 361

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 160/350 (45%), Gaps = 12/350 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE-ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P+ KK++DA  +G    S++   LF  I A LI ++             L +L  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDIPKLF--IFAALIEMILAMVDSGMERLKKLIMLPM 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
               R     + +  ++T   L     ++P L +  +  +    +Q  P+     +K  F
Sbjct: 61  MELDRPFG--AALGEVMTKAGLELLLFMLPVLGVAAVMRLAGGWVQFGPLFATEALKLDF 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++     ++++S   L N   S  K +++  ++   L  +   ++     +  S    
Sbjct: 119 ERLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKA 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                R++  + L  +  L ++D     + +    +MS ++I+ E K+S G+P +K+ +K
Sbjct: 179 LVDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRK 238

Query: 248 SIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           S+A     +             A +++ NPTH+A+AL Y   +   P ++ KG++  A++
Sbjct: 239 SLAHEISQQPASAAPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADARE 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           + + A +  +P+     LAR+L+++  +   IP    +AVAQ +Y++  +
Sbjct: 299 LIERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQ-VYRLLRE 346


>gi|220913714|ref|YP_002489023.1| type III secretion exporter [Arthrobacter chlorophenolicus A6]
 gi|219860592|gb|ACL40934.1| type III secretion exporter [Arthrobacter chlorophenolicus A6]
          Length = 359

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+  +L  G+KR++ +  +   +K+ +K ++VG I+  S+ +    +L      P S
Sbjct: 116 RAEFEHFNLLSGMKRLFGMQAVWGGLKALLKAVVVG-IVLYSVVQGLIPVLLTAGGLPVS 174

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWS-YHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            +  A       L+   +    +           +   K +MSK+E+ DE K + G+P++
Sbjct: 175 GVIAAAADGIGALVQCAVAAGLVLAAVDVLVVMRRNRKKTRMSKKEVTDENKNTEGDPLV 234

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++ ++S   +  R++M+ A + A +++ NPTH A+AL+Y      AP +VAKG  +IA +
Sbjct: 235 RSHRRSRQLAMSRNRMIAAIADADVVLVNPTHVAVALKY-DAGKSAPRVVAKGAGVIAAR 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +R  A    +P+ ++  LAR+L     +   IP   Y+AVA ++
Sbjct: 294 IRAEAEAKEVPMVQDIPLARALHSACELGQEIPVELYRAVAGVL 337


>gi|254460321|ref|ZP_05073737.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium
           HTCC2083]
 gi|206676910|gb|EDZ41397.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 137

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 76/120 (63%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MS +E++DE K+S G P +K  +++ A+    ++MM     A ++I NPTHYA+AL++  
Sbjct: 1   MSHKELQDESKESEGAPHLKQARRARAQEVAMNQMMGEFPTADVVIVNPTHYAIALKWEG 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           + + AP+ VAKG + IA ++++ A +  + I  +P  AR+++  V I   I P +Y+AVA
Sbjct: 61  SRSAAPICVAKGVDDIAMRIKEAAKDAKVAIHSDPPTARAIYAVVEIGQEINPEYYEAVA 120


>gi|1648939|gb|AAB17687.1| putative [Sinorhizobium fredii]
          Length = 351

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 157/355 (44%), Gaps = 33/355 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  + K+   + KK+ DA   G  P S +    ++  A L YL  +    +        
Sbjct: 2   SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKCREA 59

Query: 64  VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQR 114
           +LL      KL++      +   + LL  L+L+       G LL  +FG   + + L  R
Sbjct: 60  LLLTD----KLQNLPFNLAVRQALVLLVELTLATV-----GPLLSALFGAVILAALLANR 110

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V +L  +KP+F++++  + +KR+ S  + V   K+  K++++G   ++     + TM+
Sbjct: 111 GFVFSLEPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV 170

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY-SKLKMSKQEIKDEI 233
                      +   FT  K LI I      +  L         +  +++M+K EIK E+
Sbjct: 171 YLPVCGMGC--FGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKREL 228

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAP 289
           K+  G P +K       R RIR++M         RAT++    T   + LRY++ E   P
Sbjct: 229 KEQQGTPELKGE-----RRRIRNEMASEPPLGVHRATLVYRG-TAVLIGLRYVRGETGVP 282

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           +LV + +   A  M + A    + I ++  LA  L     + +AIP  +++ +A+
Sbjct: 283 ILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPIAR 337


>gi|326794359|ref|YP_004312179.1| type III secretion protein, YscU/HrpY family [Marinomonas
           mediterranea MMB-1]
 gi|326545123|gb|ADZ90343.1| type III secretion protein, YscU/HrpY family [Marinomonas
           mediterranea MMB-1]
          Length = 368

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 152/332 (45%), Gaps = 23/332 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KKI+D+  +G    S++      +   L  +L     G+ ++     + L+ 
Sbjct: 3   EKTEKATPKKIKDSRKKGQVGQSQDIHKLMILGVLLEVVLGMVDSGVRNLEKLTSIPLSM 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q     +   V  +  L+++AS +V+  L + ++F +    +Q   ++    +K  F 
Sbjct: 63  INQPFQYALQATV--VNCLTIAAS-MVMMALGIAVLFRLLGGWLQFGFLIAPEALKIDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTI-------ITISLTENYFTMLDFISANP 181
           R++    +K ++S   L     SF+K I +G +       I  SL +   T LD      
Sbjct: 120 RLNPFSQLKNMFSGKKLFELFNSFIKAITIGVVMYFILTPILPSLGKLALTDLDTTWRG- 178

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +   F  V +  + +L+ IA++   D G   +  +  LKMSK ++K E K   G+P 
Sbjct: 179 ---IAELFLKVERACVGVLIVIASI---DFGMQKYFHFKSLKMSKDDVKQEYKNQEGDPH 232

Query: 242 IKNRQKSIARSRIRHKMMEATS------RATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           +K ++KS A      +   A S       A  ++ NPTH+A+AL Y   E   P ++ KG
Sbjct: 233 LKGQRKSEAVRLATEEPSPAPSAKPELGEADTLVVNPTHFAVALYYRSEETPLPKILTKG 292

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           Q+  A  + + A E  IP+     LAR+L+K+
Sbjct: 293 QDQDALDLIEQAKEKGIPVIRFIWLARTLYKE 324


>gi|51103205|gb|AAT96346.1| HrcU [Pseudomonas viridiflava]
          Length = 361

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 165/353 (46%), Gaps = 18/353 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P+ KK++DA  +G    S++   LF  I A L+ ++     G  S    L  L  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDVPKLF--IFAALMEMILGLVDGGMSRLKALIALPL 60

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +   R     + +  +LT         ++P L +     +    +Q  P+   + +K  F
Sbjct: 61  TELDRPFN--AALGEVLTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDF 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS---I 184
           +R++     K+++S   L N   S  K +++  ++ + L      ++     +  S    
Sbjct: 119 ERLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMA 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L   F  + +  + +LL +A L      + +       +MS ++I+ E K+S G+P +K+
Sbjct: 179 LVELFTHLSRTCLGLLLVLAALDFALQKYFF---VKGQRMSHEDIRKEYKESEGDPHMKS 235

Query: 245 RQKSIARSRIRHKMMEATSRATI-----IITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
            +K++AR         A +RA +     ++ NPTH+A+AL Y   +   P ++ KG++  
Sbjct: 236 HRKALAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAE 295

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A+++ + A E  +P+     LAR+L+++  +   IP    +AVAQ +Y++  +
Sbjct: 296 ARELIERAREAGVPVVRFVWLARTLYREN-VGQFIPRATLQAVAQ-VYRLLRE 346


>gi|330953285|gb|EGH53545.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 348

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 164/357 (45%), Gaps = 36/357 (10%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + K++  + KK+ DA  +G   +++   L S ++  L  L              + 
Sbjct: 2   GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46

Query: 64  VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
           VLL  A A    L D++ +++          LL H       + +P + + +   I + +
Sbjct: 47  VLLPKARAQVEALIDLAALIYIEPFNDVWPRLLDHAEQIVIGITLPVVAVTVAAVILTNI 106

Query: 112 I-QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           +  R  V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +   +  
Sbjct: 107 VTMRGVVFSVEPIQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQAL 166

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKLKMSK 226
             +++  S      +  +F+ V K L+  +    L +  + VL   W + +   ++KMS 
Sbjct: 167 QALMES-SRCGEGCIESSFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EMKMSH 222

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
            E K E K   G+P+IK  ++   R           +RA+++I +   + + +RY++ E 
Sbjct: 223 SEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGET 282

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
             P++V +     +  +   A    I ++ + SLA S+ K+      +P   ++AVA
Sbjct: 283 PVPIVVCRAAQHESAALLADAAPLGIALWPDASLAESIAKRSVAGDPVPENTFQAVA 339


>gi|285018286|ref|YP_003375997.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473504|emb|CBA16007.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 358

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 23/328 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE--ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            KTE P+ KK  D+  +G +  + +  A L   +    I  LF F   I+S    L  L 
Sbjct: 3   EKTEKPTQKKRADSEKKGKSFKAADIGAMLLLIVGGVAIPFLFDFD-SIFS----LFKLF 57

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSY------LIQRIPVLNL 120
            SA Q K  D+      +  L   A    + G ++F++  + S+      LIQ    L  
Sbjct: 58  GSAVQAK--DLPGPFAYVKTLGWVA----VKGTVIFIV--VCSFATTVPSLIQSRLTLAF 109

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++  F  ++   G+K++++I    + +K+ + II     + I    N+   L      
Sbjct: 110 DAIRFDFDALNPANGLKKLFNIRVAKDLVKTLLYIITTSAAVAI-FIHNHCRELFMTMRM 168

Query: 181 PHSILYHAFFTVRKVLIMILLFIA-TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           P   L      + K L + ++ +A  + VLD    Y  +   LKM K E+K EIKQS GN
Sbjct: 169 PEFALCSELGHLAKYLCLYMIGMAIPVLVLDCLTEYFLYIHGLKMEKYEVKQEIKQSQGN 228

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K+RQ+ ++R  +  K+ E    +T ++ NPTH A+ +         P++  +  +  
Sbjct: 229 PEVKSRQRQLSREVLSEKVKENVKGSTFVLANPTHIAIGIYADFKVAPFPMVSVREVDAR 288

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           A+++   A +  +P+  +  LAR +F +
Sbjct: 289 AREVIDYAMKCGVPVLRDIPLARRIFDR 316


>gi|206563886|ref|YP_002234649.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092677|gb|AAL59406.1| BcscU [Burkholderia cenocepacia]
 gi|28394258|gb|AAO31733.1| BcscU [Burkholderia cenocepacia]
 gi|198039926|emb|CAR55904.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 343

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 123/239 (51%), Gaps = 10/239 (4%)

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF 171
           +Q   V+  + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+  
Sbjct: 104 VQVGGVMAWSRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLD 163

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQ 227
             +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS  
Sbjct: 164 PSVQSGFTRPVSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSID 219

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E++ E K+  G+P I+ +++ +AR      + +    A++++ +P   A+AL Y      
Sbjct: 220 EVRREHKEDEGDPHIQAKRRQLAREVQFASLPDRIGYASVVVYSP-RVAVAL-YYGGMGS 277

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            P ++A+G+   A+++ ++A +   P      LA++L++  P N  I P  ++ VAQL+
Sbjct: 278 LPWVLARGEGDAAERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFREVAQLL 336


>gi|71736693|ref|YP_274734.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71557246|gb|AAZ36457.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 348

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 160/359 (44%), Gaps = 36/359 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   + K++  S KK+ DA  +G    S+E      IL C + +          V +
Sbjct: 1   MSESS--EEKSQPASDKKLRDARKKGQVAKSQELVSGMVILMCTLCISVLLPKARAQVEA 58

Query: 61  --DLHVLL-----ASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFGIGSYL 111
             DL  L+     A    R L+    IV  +T   ++++   +++  ++   M G+    
Sbjct: 59  LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIV--TMRGV---- 112

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITI 164
                V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L       VG     
Sbjct: 113 -----VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQ 167

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           +L E+       I +  + +L    FTV    +   L +  + VL   W + +   ++KM
Sbjct: 168 ALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKM 220

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           S  E K E K   G+P+IK  ++   R            RA+++I +   + + +RY++ 
Sbjct: 221 SHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRG 280

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           E   P++V +  +  +  +   A    I  + + SLA  + ++      +P   ++AVA
Sbjct: 281 ETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVA 339


>gi|330963711|gb|EGH63971.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 348

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 163/362 (45%), Gaps = 44/362 (12%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + K++  + KK+ DA  +G   +++   L S ++  L  L              + 
Sbjct: 2   GESSEEKSQPATDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC-------------IS 46

Query: 64  VLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIGSYL 111
           VLL  A A    L D++ +++          LL H    A ++VI   L  +   +G+ +
Sbjct: 47  VLLPKARAQVEALIDLTALIYIEPFAEVWPRLLDH----AEQIVIGITLPVVAVTVGAVI 102

Query: 112 I-----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           +      R  V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +  
Sbjct: 103 LTNIVTMRGVVFSVEPIQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVG 162

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL----LFIATLTVLDIGWSYHQWYSKL 222
            +    +++  S      +   F+ V K L+  +    L +  + VL   W + +   ++
Sbjct: 163 RQALQALMES-SRCGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGR---EM 218

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           KMS  E K E K   G+P+IK  ++   R            RA+++I +   + + +RY+
Sbjct: 219 KMSHSEQKRERKDVDGDPMIKRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYV 278

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + E   P++V +     +  +   A    I  + + SLA ++ ++      +P   ++AV
Sbjct: 279 RGETPVPIVVCRAAPHDSAALLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAV 338

Query: 343 AQ 344
           A 
Sbjct: 339 AD 340


>gi|19749331|gb|AAL98701.1| Y4yO [Sinorhizobium fredii]
          Length = 345

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 155/353 (43%), Gaps = 33/353 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  + K+   + KK+ DA   G  P S +    ++  A L YL  +    +        
Sbjct: 2   SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKCREA 59

Query: 64  VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQR 114
           +LL      KL++      +   + LL  L+L+       G LL  +FG   + + L  R
Sbjct: 60  LLLTD----KLQNLPFNLAVRQALVLLVELTLATV-----GPLLSALFGAVILAALLANR 110

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V +L  +KP+F++++  + +KR+ S  + V   K+  K++++G   ++     + TM+
Sbjct: 111 GFVFSLEPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV 170

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY-SKLKMSKQEIKDEI 233
                      +   FT  K LI I      +  L         +  +++M+K EIK E+
Sbjct: 171 YLPVCGMGC--FGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKREL 228

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAP 289
           K+  G P +K       R RIR++M         RAT++    T   + LRY++ E   P
Sbjct: 229 KEQQGTPELKGE-----RRRIRNEMASEPPLGVHRATLVYRG-TAVLIGLRYVRGETGVP 282

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           +LV + +   A  M + A    + I ++  LA  L     + +AIP  +++ +
Sbjct: 283 ILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335


>gi|24251294|gb|AAN46413.1| HrcU [Xanthomonas oryzae pv. oryzae]
          Length = 277

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL-- 65
           + KTE P+ KK+ DA  +G  P+S + +  + +   L   L   S G Y V   +  L  
Sbjct: 3   EEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGAL---LVMKSAGDYFV-DHMRALTR 58

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +         D + I   L H+ +    L++P L   ++ G+     Q     +L  V P
Sbjct: 59  IGFDFSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSP 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  I 
Sbjct: 119 KFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDIS 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY--SKLKMSKQEIKDEIKQSYGNPIIK 243
             A+ T+  +  + +L    +   D  WS   W      +MSK E K E K+S G+P IK
Sbjct: 179 QIAWRTLSMLFALGVLLFILVGAAD--WSVQHWLFIRDKRMSKDEQKREYKESEGDPEIK 236

Query: 244 NRQKSI 249
            ++K I
Sbjct: 237 GKRKGI 242


>gi|298487107|ref|ZP_07005157.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158350|gb|EFH99420.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 348

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 36/360 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   + K++  S KK+ DA  +G    S++      IL C + +          V +
Sbjct: 1   MSESS--EEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLPKARAQVEA 58

Query: 61  --DLHVLL-----ASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFGIGSYL 111
             DL  L+     A    R L+    IV  +T   ++++ S +++  ++   M G+    
Sbjct: 59  LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVSAVILTNIV--TMRGV---- 112

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITI 164
                V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L       VG     
Sbjct: 113 -----VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQ 167

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           +L E+       I +  + +L    FTV    +   L +  + VL   W + +   ++KM
Sbjct: 168 ALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKM 220

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           S  E K E K   G+P++K  ++   R            RA+++I +   + + +RY++ 
Sbjct: 221 SHSEQKRERKDIDGDPMVKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRG 280

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E   P++V +  +  +  +   A    I  + + SLA  + ++      +P   ++AVA 
Sbjct: 281 ETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVAD 340


>gi|257487953|ref|ZP_05641994.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|320324520|gb|EFW80597.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328893|gb|EFW84892.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330985219|gb|EGH83322.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331008642|gb|EGH88698.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 348

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 160/360 (44%), Gaps = 36/360 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   + K++  S KK+ DA  +G    S++      IL C + +          V +
Sbjct: 1   MSESS--EEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLPKARAQVEA 58

Query: 61  --DLHVLL-----ASATQRKLEDISHIVFLLTH--LSLSASRLVIPGLLLFMMFGIGSYL 111
             DL  L+     A    R L+    IV  +T   ++++   +++  ++   M G+    
Sbjct: 59  LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIV--TMRGV---- 112

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITI 164
                V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L       VG     
Sbjct: 113 -----VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQ 167

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
           +L E+       I +  + +L    FTV    +   L +  + VL   W + +   ++KM
Sbjct: 168 ALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKM 220

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           S  E K E K   G+P+IK  ++   R            RA+++I +   + + +RY++ 
Sbjct: 221 SHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRG 280

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E   P++V +  +  +  +   A    I  + + SLA  + ++      +P   ++AVA 
Sbjct: 281 ETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVAD 340


>gi|262360426|gb|ACY57147.1| type III secretion apparatus protein [Yersinia pestis D106004]
          Length = 215

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 2/199 (1%)

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI-ATLT 207
           MKS +K+ ++ T+I   L   Y     +++          F T+   L+  L+      +
Sbjct: 1   MKSLLKVGVL-TLIFGYLLMQYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFS 59

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
           ++D  +  +    +LKMS  E+K E K S G+P IK +++ +              R+T 
Sbjct: 60  LMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQHEVQSGSFATNVRRSTA 119

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           ++ NPTH+A+ L Y   E   P+++ KG +  A  +  +A +  IP+ E  +LAR+L + 
Sbjct: 120 VVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRD 179

Query: 328 VPINSAIPPVFYKAVAQLI 346
           V     IP  F++ VA L+
Sbjct: 180 VACGDTIPEQFFEPVAALL 198


>gi|238755990|ref|ZP_04617315.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473]
 gi|238705779|gb|EEP98171.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473]
          Length = 386

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 32/338 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL--- 65
            KTE P+ KK+ D+  +G +   ++  + +++L C    +  FS    S+T+  H+L   
Sbjct: 3   EKTEQPTDKKVRDSAKKGQSFKGKDL-IAAAVLVCGALAISGFS----SLTALGHLLQKV 57

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L S ++ K   IS  +  L  L L A   VIP LL  ++ G+   L+Q    L    +K 
Sbjct: 58  LLSPSEIK---ISAYLDELYRLFLYA---VIPVLLCCLLPGMLLSLLQSRFRLATEALKI 111

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F  ++   G K+I+ I  L   +K+ + ++  GT I        +T +  +      +L
Sbjct: 112 NFSHLNPISGFKKIFGIRPLKELVKALLYLLAFGTSI--------YTFI-LLWRREVFML 162

Query: 186 YHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQ-----WYSKLKMSKQEIKDEIKQS 236
           YHA      T    L +I +F+   + L +           +   LKM KQE+K E K++
Sbjct: 163 YHAELEEMITQWGRLCIIFIFVFLASSLILLLLDTLTELFLFIKDLKMEKQEVKKEYKEN 222

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK  +K I R  +  +       + +++ NPTH AL + +  +  + P+++ K Q
Sbjct: 223 EGDPQIKQARKEIHREILSEETKNGIKNSQVVMANPTHIALGIYFDPSVAELPLIIVKAQ 282

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           N  A+ +   A E  IP+  +  LAR L++   I S I
Sbjct: 283 NAQARAVIAYAEEQGIPVVRDIPLARRLYRNNSIFSFI 320


>gi|16520047|ref|NP_444167.1| innermembrane protein RhcU; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2494576|sp|P55723|Y4YO_RHISN RecName: Full=Probable translocation protein y4yO
 gi|2182740|gb|AAB91954.1| innermembrane protein RhcU; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 345

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 33/353 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  + K+   + KK+ DA   G  P S +    ++  A L YL  +    +        
Sbjct: 2   SDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLGYL--WLRGSVIEDKCREA 59

Query: 64  VLLASATQRKLED------ISHIVFLLTHLSLSASRLVIPGLLLFMMFG---IGSYLIQR 114
           +LL      KL++      +   + LL  L+L+       G LL  +FG   + + L  R
Sbjct: 60  LLLTD----KLQNLPFNLAVRQALVLLVELTLATV-----GPLLSALFGAVILAALLANR 110

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V +L  +KP+F +++  + +KR+ S  + V   K+  K++++G   ++     + TM+
Sbjct: 111 GFVFSLEPMKPNFDKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV 170

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY-SKLKMSKQEIKDEI 233
                      +   FT  K LI I      +  L         +  +++M+K EIK E+
Sbjct: 171 YLPVCGMGC--FGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKREL 228

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAP 289
           K+  G P +K       R RIR++M         RAT++    T   + LRY++ E   P
Sbjct: 229 KEQQGTPELKGE-----RRRIRNEMASEPPLGVHRATLVYRG-TAVLIGLRYVRGETGVP 282

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           +LV + +   A  M + A    + I ++  LA  L     + +AIP  +++ +
Sbjct: 283 ILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335


>gi|268592372|ref|ZP_06126593.1| type III secretion system protein BsaZ [Providencia rettgeri DSM
           1131]
 gi|291312158|gb|EFE52611.1| type III secretion system protein BsaZ [Providencia rettgeri DSM
           1131]
          Length = 373

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 160/345 (46%), Gaps = 22/345 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI---YSVTSDLHVL 65
            KTE P+ KKI D+  +G +  S++     S+ A ++ +  F   G+   Y +   +  +
Sbjct: 3   EKTEKPTDKKIRDSAKKGQSFKSKD-----SVAAIVLVVSAFVIEGVSSLYELGGLMRKI 57

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S T+ K++ +    F    LS+     V+P L    + G    L+Q    L    +K 
Sbjct: 58  FLSPTEIKIDALLW-QFFTIFLSI-----VLPVLFTCFLSGTIISLLQSRFRLASEAIKL 111

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI- 184
            F +++   G K+I+S+N+L    K  +K IL   +  IS+   +      I     ++ 
Sbjct: 112 DFTKLNPIAGFKKIFSLNSL----KELIKAILYLIVFIISILVFFIVWRKDIFMLYRTMI 167

Query: 185 --LYHAFFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             +   + ++    I++ L +A + +L D    +  +   LKM KQE+K E K + G+P 
Sbjct: 168 NGMISQWVSLCVTFIVVFLAVALIIILVDAIAEFFLYIKNLKMEKQEVKKEYKDNEGDPH 227

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK+ ++ + +  +  ++      +T ++ NPTH AL + Y       P L +K +   AK
Sbjct: 228 IKSARRGMHQELLSEEVKSNVRNSTFVMANPTHIALLIYYDSNIAPLPFLFSKSKGSQAK 287

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            + K A +  +P+  +  LAR +++    +S I     + V Q+I
Sbjct: 288 AIIKYAEQQGVPVIRDIVLARQIWRSYKNDSFIDEKGLEDVMQII 332


>gi|227820507|ref|YP_002824478.1| translocation protein in type III secretion system, RhcU
           [Sinorhizobium fredii NGR234]
 gi|227339506|gb|ACP23725.1| translocation protein in type III secretion system, RhcU
           [Sinorhizobium fredii NGR234]
          Length = 345

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 158/354 (44%), Gaps = 29/354 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL-LFFFSPGIYSVT 59
           MSE    + K+   S KKI DA  +G   +     + S I+     L LF+ +P   S+ 
Sbjct: 1   MSETS--EEKSLPASDKKIRDARRKGQ--VMHSPDMVSGIVVLFSTLFLFYVAP---SLQ 53

Query: 60  SDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
             +  LL  A+   +R   D+ + +  +   +L  + L I G+ +  +    +  I +  
Sbjct: 54  VKIERLLDEASHIYERPFADVWYRLSTIAADALWTTVLPILGITIVAILAT-NVAITKGF 112

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V +   + P F RV+   G+KRI S+ ++V+F K+  KI      ++I+    +   L  
Sbjct: 113 VFSAEPLAPDFNRVNPASGLKRIASLKSVVDFGKALFKI----AALSIAFAVVFHAGLGS 168

Query: 177 ISANP-------HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
           +  +P       H+       T+  + I   + +  + +    W + +   +++M++ E 
Sbjct: 169 LFQSPTCGFACLHATSLSMLKTITSIAIAAFVVMGAVDLFLQRWLFLR---EMRMTRSES 225

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K E K + G+P+I+  ++ +AR  +        + A ++I      ++ +RY++ E   P
Sbjct: 226 KREHKDTEGDPLIRQERRKLAR--LLGTTKTGLAGAVLLIGEEGAVSVGIRYVRDETPVP 283

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           ++V +     A  MR  A    IP   +  LA  L K  PI + +P   ++ VA
Sbjct: 284 IVVCRAFGPAASSMRAQARSRTIPFMADAKLAAELGK-TPIGAPVPDRLFQEVA 336


>gi|289624372|ref|ZP_06457326.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646629|ref|ZP_06477972.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868644|gb|EGH03353.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 348

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 164/368 (44%), Gaps = 52/368 (14%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   + K++  S KK+ DA  +G   +++   L S ++  L  L             
Sbjct: 1   MSESS--EEKSQPASDKKLRDARKKGQ--VAKSQDLVSGMVILLCTLC------------ 44

Query: 61  DLHVLL--ASATQRKLEDISHIVF----------LLTHLSLSASRLVIPGLLLFMMFGIG 108
            + VLL  A A    L D++ +++          LL H    A ++VI   +  +   +G
Sbjct: 45  -ISVLLPKARAQVEALIDLTALIYIEPFAEVWPRLLDH----AEQIVIGITVPVVAVTVG 99

Query: 109 SYLI-----QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL------ 157
           + ++      R  V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L      
Sbjct: 100 AVILTNIVTMRGVVFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFY 159

Query: 158 -VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
            VG     +L E+       I +  + +L    FTV    +   L +  + VL   W + 
Sbjct: 160 VVGRQALQALMESSRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFG 215

Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
           +   ++KMS  E K E K   G+P+IK  ++   R            RA+++I +   + 
Sbjct: 216 R---EMKMSHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLMIGDSGGWV 272

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           + +RY++ E   P++V +  +  +  +   A    I  + + SLA  + ++      +P 
Sbjct: 273 VGVRYVRGETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPE 332

Query: 337 VFYKAVAQ 344
             ++AVA 
Sbjct: 333 NTFQAVAD 340


>gi|256370976|ref|YP_003108800.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007560|gb|ACU53127.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331]
          Length = 390

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 75/124 (60%)

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E++DE+++  G+  +K R++ +AR  +R  M+   ++A +++ NPTH A+ALRY    + 
Sbjct: 220 EVRDELREHEGDLAVKARRRRLAREFVRRAMLADVAQADVVVVNPTHVAVALRYDPRRDR 279

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG + +A  +R+ A    +PI E+P LAR ++    +   IP   +  VA+L+ 
Sbjct: 280 APTVVAKGLDHLAMTIRERARAARVPIVEDPPLARVVYVASRVGEPIPASLFLVVARLLA 339

Query: 348 KIYH 351
            +Y 
Sbjct: 340 FVYR 343


>gi|153003614|ref|YP_001377939.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5]
 gi|152027187|gb|ABS24955.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5]
          Length = 343

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 161/344 (46%), Gaps = 12/344 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           ++TE P+ K++ +A   G+    RE    +++   L+ L         S+T +L  LL +
Sbjct: 4   DRTERPTPKRLREARRRGDVAQGRELGGAAALAGGLLALALTGP----SMTRELASLLRA 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q   +  +    LL    ++  RL +      +   + +  +Q   V     + P  +
Sbjct: 60  QLQAAAQPSADPAALLHAALVTVGRLALAPASAALAAAVLAGALQTGFVFAPGALSPRAE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           RV+   G++R+ S  + +  +    K  ++  +  + L     ++      +  + L+ +
Sbjct: 120 RVNPLRGLRRLLSPASALAVLLGLAKAAVLLGVAVVWLRSAAPSLAGLARLDARA-LWGS 178

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  ++  ++   A L + D+  +  +    L+M++ E++ E K+  G+P  +  ++ 
Sbjct: 179 LPMLGGLVARLVAAYALLALGDVALARFRHRRALRMTRDEVRREHKEDEGDPAHRAERRR 238

Query: 249 IARSRIRHKMMEAT--SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + R+     ++EA   SRAT+++ NPTH A+ALR+ +   DAP +VAKG    A ++R  
Sbjct: 239 LHRA-----LLEAGPVSRATVVVVNPTHVAVALRHDRDGEDAPRVVAKGSGPAAARIRSA 293

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A    +PI  +  LAR+L +   +   IP   Y+A A ++  +Y
Sbjct: 294 ARRAGVPIVRDVPLARALHRLAEVGDEIPEELYEAAAAVLAHLY 337


>gi|117928068|ref|YP_872619.1| type III secretion exporter [Acidothermus cellulolyticus 11B]
 gi|117648531|gb|ABK52633.1| type III secretion exporter [Acidothermus cellulolyticus 11B]
          Length = 391

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 36/361 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ +K+++A  EG    S E   +  +L   I+L+      +   T+     +  
Sbjct: 6   QKTEKPTQRKLKEARREGRVARSPEVGAWLGLLVG-IFLVHLT---MTRTTAAFRQAIDG 61

Query: 69  ATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            TQ  +  D +  V +L     S +    P     ++  +G+ + Q    L+   + P +
Sbjct: 62  LTQVIRTPDPNLAVHVLGTSLASGAVAAAPLAGAILLTALGASVAQGGLRLSAKALAPKW 121

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI------SANP 181
           + ++   G KR++         K+  K  L+  I+       Y TM   +      +  P
Sbjct: 122 QSLNPLNGWKRMFGPRGGWEAAKALAKTGLLALIL-------YDTMRGLVPLTTTGTVTP 174

Query: 182 HSILYHAFFTV-----RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              + H   +      R   +  LL    L  LD  +   +  + L+M+K E+K+E++ +
Sbjct: 175 LQGVVHTAGSAVLRFARDAAVAGLL----LAFLDYAYQLRRHRASLRMTKHEVKEELRTT 230

Query: 237 YGNPIIKN----RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            G+P I++    RQ ++ R R    M+   + A +++ NPTH A+ALRY    + AP +V
Sbjct: 231 EGDPRIRSAIRVRQMALRRRR----MIRDVATADVVVVNPTHIAVALRYTPG-SGAPTIV 285

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG   +A ++R  A  H +P+ E+  LAR+L++   +   IP   + AVA+++  ++  
Sbjct: 286 AKGAGAVAARIRDEAIRHRVPLVEDIPLARALYRICDVGQEIPRELFVAVARVLAFVFSL 345

Query: 353 K 353
           K
Sbjct: 346 K 346


>gi|134294009|ref|YP_001117745.1| type III secretion exporter [Burkholderia vietnamiensis G4]
 gi|134137166|gb|ABO58280.1| type III secretion exporter [Burkholderia vietnamiensis G4]
          Length = 342

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 167/356 (46%), Gaps = 40/356 (11%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + P++K++ +A  +G+ P S E    SS          FF     ++   L  L A 
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAET--VSSA---------FFVGVCVALAVGLGTLFA- 50

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRL--VIPG------------LLLFMMFGIGSYLIQR 114
               +L+ +  +VF     +  A+RL  ++ G            +   ++ G+ +  +Q 
Sbjct: 51  ----RLQALFRLVFDAAGAADPAARLAVLVDGAARDWALLSAQIVAAGLLAGLLAGFVQV 106

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V+  + + P   R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+    +
Sbjct: 107 GGVMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLVATLGWLIVESLDPSV 166

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQEIK 230
                 P SIL      + K+L+++  + A     + ++DI    H++  K+KMS  E++
Sbjct: 167 QAGFTRPVSILA----LIVKLLMLLFGWAALIYVVMALIDIVHQRHEFNQKMKMSIDEVR 222

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E K+  G+P I  +++ +AR      + +    A++++ +P   A+AL Y       P 
Sbjct: 223 REHKEDEGDPHIAAKRRQLAREAQFAALPDRIGYASVVVYSP-RVAVAL-YYGGIGSLPW 280

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++A+G+   A+++ ++A +   P      LA +L++  P N  I    ++ VAQL+
Sbjct: 281 VLARGEGEAAERIVRLARDALRPTLANVGLAHALYETTPENGTIQQQHFREVAQLL 336


>gi|213859844|ref|ZP_03385548.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 242

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 124/244 (50%), Gaps = 7/244 (2%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G  S+   L 
Sbjct: 3   EESDDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLA 58

Query: 64  VLLASA---TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +L++      R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  GMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKN 244
            +K 
Sbjct: 239 HVKG 242


>gi|82795281|gb|ABB91650.1| type III secretion protein HrcU [Pseudomonas syringae pv. tagetis]
          Length = 359

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 166/365 (45%), Gaps = 50/365 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++       L  L+ LL           S++ + LA 
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLL---------AVSEVTLGLAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117
            +  +L+ +  + F        AS  +I       LL F +  +G  ++ R+        
Sbjct: 47  ESVNRLQALLGLSFKGIDRPFMASVELIANEGFSVLLSFTLCSVGLAMLMRLISSWMQIG 106

Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                    L++N + P F         K+++S  N++N + S +K + +G  +   +  
Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLVLSVLKALAIGATLYSQVKP 159

Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
              T++  ++ +  +  +HA   + +  L +IL  +  + ++D     +    KL+MS +
Sbjct: 160 ALGTLI-LLANSELTTYWHALVELFQHTLRVILGLLLVIAMVDFAMQKYFHAKKLRMSHE 218

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284
           +IK E KQS G+P +K+ ++ ++   +  +   A      A +++ NPTHYA+AL Y   
Sbjct: 219 DIKKEYKQSEGDPHVKDHRRQLSHEILNQEPSAAPKPVEEADMLLINPTHYAVALYYRSG 278

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E   P++  KG++  A  + + A +  IP+ +   LAR+L+K V     IP      VA 
Sbjct: 279 ETPLPMIHCKGEDADALALIERAKKAGIPVVQSIWLARTLYK-VKAGKYIPRTTLLTVAH 337

Query: 345 LIYKI 349
            IYK+
Sbjct: 338 -IYKV 341


>gi|238898600|ref|YP_002924281.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466359|gb|ACQ68133.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 349

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 17/323 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++D+  +G +  +++  +   +LA + YL+ F S       S+L  L   
Sbjct: 4   NKTEKPTQKKLKDSAKKGQSFKTKDFIIACLMLAGVQYLISFAS------FSELMFLYKE 57

Query: 69  ATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 E DI    + ++ LS+   ++ +P LLL +       L+Q   +L    +K + 
Sbjct: 58  IISFNFEYDIHR--YTISVLSI-GFKIFLPILLLCIFCSALPSLLQTGFLLATKAIKLNL 114

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYFTMLDFISANPHS 183
             ++  +G K+I+S+    + +KS   ++ +GT    ++ +  T+          ++P+ 
Sbjct: 115 GALNPTKGFKKIFSLRTAKDAVKS---VLYLGTFFVAVLVVWNTKRGVLFQQLHGSSPYE 171

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I       ++ +L   L  I  + +LD    Y      LKM KQE+K E+K+  GNP IK
Sbjct: 172 ITMVWGQLLQSILWTCLGCIVIILILDALAEYFLHIKDLKMDKQEVKREMKEQDGNPEIK 231

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R++ +    +  ++      +  II NPTH A+ +         P +     N  A  +
Sbjct: 232 GRRRELHMEILSEQIKSDIKNSQCIIANPTHIAVGIYVNPDTVMMPFISVLETNQKALAV 291

Query: 304 RKIAYEHNIPIFEEPSLARSLFK 326
           R  A +  +P+ +  SLAR+++K
Sbjct: 292 RAYAKKVGVPVIQNISLARAIYK 314


>gi|218458074|ref|ZP_03498165.1| flagellar biosynthesis protein FlhB [Rhizobium etli Kim 5]
          Length = 71

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 53/61 (86%)

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++
Sbjct: 1   MVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRV 60

Query: 350 Y 350
           Y
Sbjct: 61  Y 61


>gi|218988947|gb|ACL13610.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. salamae serovar Sofia]
          Length = 356

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 150/320 (46%), Gaps = 12/320 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++A 
Sbjct: 4   NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             ++ + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+  
Sbjct: 62  NFEQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALRALLQAGFVLATEALKPNLS 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG K+++S+  + + +K+   + L   ++   +    + +  F+  N + +    
Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFLQLNGNVVGIAV 173

Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +    + +++      L VL  D    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFK 326
           A +  +P+  +  LARSLFK
Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313


>gi|183600583|ref|ZP_02962076.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827]
 gi|188019860|gb|EDU57900.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827]
          Length = 367

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 150/319 (47%), Gaps = 10/319 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI+D+  +G +  S+++     ++  +  +    +  ++ +   +  +L S
Sbjct: 3   EKTEKPTEKKIKDSAKKGQSFKSKDSVAALVLVVSVYVITG--TTSLFEIAGLMKRILLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                     +I  LL     +  ++ IP LL   + G    L+Q    L    +K  F 
Sbjct: 61  PYN------ININILLREFIGAFLKIAIPVLLACFISGAILSLLQSRFRLATEAIKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   GIK+I+S+N+L   +K+F+ +I+      +        +     +  + ++Y  
Sbjct: 115 KLNPISGIKKIFSLNSLKELIKAFLYLIVFSISAMVFFILWRHDIFLLYRSTINGVIYQ- 173

Query: 189 FFTVRKVLIMILLFIATLTVL-DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +  +    +++ L +A   +L D+   +  +   LKM KQE+K E K + G+P +K+ +K
Sbjct: 174 WVGLCATFVVVFLAVALFIILVDVVTEFFLFIKGLKMEKQEVKKEYKDNEGDPHLKSARK 233

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + +  +  ++      +T ++ NPTH A+ + Y       P L+ K   L AK + + A
Sbjct: 234 GLHQEILSEEVKSNVRNSTFVMANPTHIAMLIYYNNDIAPLPFLLFKSHGLQAKMIVRYA 293

Query: 308 YEHNIPIFEEPSLARSLFK 326
            +  +P+  +  LAR +++
Sbjct: 294 EQQGVPVVRDIPLARKIWR 312


>gi|259908635|ref|YP_002648991.1| surface presentation of antigens protein SpaS [Erwinia pyrifoliae
           Ep1/96]
 gi|224964257|emb|CAX55764.1| Export protein for peptides using the type III secretion system
           [Erwinia pyrifoliae Ep1/96]
 gi|283478607|emb|CAY74523.1| Surface presentation of antigens protein SpaS [Erwinia pyrifoliae
           DSM 12163]
          Length = 363

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 150/331 (45%), Gaps = 34/331 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK +D+  +G +   ++     ++++   +LL+       S  S    +L +
Sbjct: 3   QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLY--GMDFSSFISYFSKILLN 60

Query: 69  ATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                ++D +  ++++   LS        P + +  + GI + L Q    +    +K +F
Sbjct: 61  ENSVNIDDFMLQMMYIFLQLSF-------PLIGVCCLSGIIATLFQTRFTIATQALKLNF 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHS-IL 185
           K ++  EGIK+I+S+  +  F+KS   +++             FT  +FI+ +  H+ ++
Sbjct: 114 KALNPVEGIKKIFSMRTVKEFIKSLCYLMVF-----------LFTCYNFITNDLKHALVI 162

Query: 186 YHAF----------FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +HA            TV+ V I I   +  L   D    Y      LKM K E+K E K+
Sbjct: 163 HHAGIGQLIVSLLSLTVKAVTIFIAYSLFVLCA-DFIMEYFLHVKDLKMDKHEVKQEHKE 221

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S GNP IK+ ++   +  +  + M A   +++++ NPTH A+A+ +       P +  + 
Sbjct: 222 SDGNPQIKSARRRAHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRA 281

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
            N  AK     A E  IP+     L R L+K
Sbjct: 282 SNFKAKAALLYAEEIGIPVVRNVLLTRRLYK 312


>gi|62181389|ref|YP_217806.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129022|gb|AAX66725.1| surface presentation of antigens; secretory proteins [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 356

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 149/320 (46%), Gaps = 12/320 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++A 
Sbjct: 4   NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+  
Sbjct: 62  NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG K+++S+  + + +K+   + L   ++   +    + +  F   N + +    
Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173

Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +    + +++      L VL  D    Y +    +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFRTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFK 326
           A +  +P+  +  LARSLFK
Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313


>gi|51103002|gb|AAT96149.1| HrcU [Pseudomonas viridiflava]
 gi|51103057|gb|AAT96203.1| HrcU [Pseudomonas viridiflava]
          Length = 359

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 157/350 (44%), Gaps = 20/350 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMAVSEVTLGLADESVNRLQALLALSFKG 62

Query: 69  ATQRKLEDISHI----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             +  L  + H+    + +L   +L +  L +   L+     +G     +   +++N + 
Sbjct: 63  IDRSFLSAVEHLTSEGLSVLISFTLCSVGLAMLMRLISSWVQVGFLFAPKALKIDINKIN 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F         K+++S  N+   + S +K + +   +   +     T++  I AN   +
Sbjct: 123 P-FSHA------KQMFSGQNISTLLLSILKAVAIAATLYSQVKPALGTLI--ILANSDLV 173

Query: 185 LY-HAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            Y HA   + R +L +IL  +  + + D     +    KL+MS ++IK E KQS G+P +
Sbjct: 174 TYWHALVELFRHILRVILGLLLAIAMADFALQKYFHAKKLRMSHEDIKKEYKQSEGDPHV 233

Query: 243 KNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           K  ++ ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  
Sbjct: 234 KGHRRQLSHEILNQEPTAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDED 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +   A    IP+ +   LAR+L++ V +   IP    +AV   IYK+
Sbjct: 294 ALDLIARAKRAGIPVVQSIWLARTLYR-VQVGKYIPRPTLQAVGH-IYKV 341


>gi|213620930|ref|ZP_03373713.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 123

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 54/81 (66%)

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA ++R+I  EH +P 
Sbjct: 1   QRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPT 60

Query: 315 FEEPSLARSLFKQVPINSAIP 335
            E P LAR+L++     S  P
Sbjct: 61  LEAPPLARALYRHAESVSKFP 81


>gi|310767465|gb|ADP12415.1| surface presentation of antigens protein SpaS [Erwinia sp. Ejp617]
          Length = 363

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 34/331 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK +D+  +G +   ++     ++++   +LL+       S  S    +L +
Sbjct: 3   QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLY--GMDFSSFISYYSKVLLN 60

Query: 69  ATQRKLED-ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                ++D +  ++++   LS        P + +  + GI + L Q    +    +K +F
Sbjct: 61  ENSVNIDDFMLQMMYIFLQLSF-------PLIGVCCLSGIIATLFQTRFTIATQALKLNF 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHS-IL 185
           K ++  EGIK+I+S+  +  F+KS   +++             FT  +FI+ +  H+ ++
Sbjct: 114 KALNPVEGIKKIFSMRTVKEFIKSLCYLMVF-----------LFTCYNFITNDLKHALVI 162

Query: 186 YHAF----------FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           +HA            TV+ V I I      L   D    Y      LKM K E+K E K+
Sbjct: 163 HHAGIGQLIVSLLSLTVKAVTIFIAYSFFVLCA-DFIMEYFLHVKDLKMDKHEVKQEHKE 221

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S GNP IK+ ++   +  +  + M A   +++++ NPTH A+A+ +       P +  + 
Sbjct: 222 SDGNPQIKSARRRAHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRA 281

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
            N  AK     A E  IP+     L R L+K
Sbjct: 282 SNFKAKAALLYAEEIGIPVVRNVLLTRRLYK 312


>gi|224584665|ref|YP_002638463.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469192|gb|ACN47022.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715873|gb|EFZ07444.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 356

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++A 
Sbjct: 4   NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+  
Sbjct: 62  NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG K+++S+  + + +K+   + L   ++   +    + +  F   N + +    
Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173

Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +    + +++      L VL  D    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFK 326
           A +  +P+  +  LARSLFK
Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313


>gi|66044456|ref|YP_234297.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255163|gb|AAY36259.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969107|gb|EGH69173.1| type III secretion protein HrcU [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 359

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 170/362 (46%), Gaps = 38/362 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++       L  L+ L+           S++ + LA 
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123
            +  +LE +  + F     S +AS  +I       LL F +  +G  ++ R+ + +   +
Sbjct: 47  ESVNRLEALLSLSFQGIDRSFAASVELIASEGLSVLLSFTLCSVGIAMLMRL-ISSWMQI 105

Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              F   +L+            K+++S  NL+N + S +K I +G  + + +     T++
Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLV 165

Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS ++IK E 
Sbjct: 166 -LLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPV 290
           KQS G+P +K  ++ +A+  +  +   A      A +++ NPTHYA+AL Y   E   P+
Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPL 284

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV   IYK+ 
Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKVV 342

Query: 351 HK 352
            +
Sbjct: 343 RQ 344


>gi|85060041|ref|YP_455743.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius
           str. 'morsitans']
 gi|84780561|dbj|BAE75338.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius
           str. 'morsitans']
          Length = 245

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 7/240 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+EAP+  + E A  EG  P SRE    +S+L  L+     +  G Y +   L  +LA 
Sbjct: 8   EKSEAPTQHRQEKAREEGQIPRSRE---LTSMLMLLVGCAMLWLDGAY-LARQLAAMLAQ 63

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF---MMFGIGSYLIQRIPVLNLNHVKP 125
                   I      LT  +   S+ V+  + LF   ++  +G+ ++      N + +K 
Sbjct: 64  GLHFDHGLIGKDRQSLTAAAPLLSQTVLALISLFAGLILVALGAPMLLGGITFNPSLIKF 123

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             K+V+   G+KR++S   L    K+ +K ++ G +    L  N+  ML  +       L
Sbjct: 124 DIKKVNPLSGLKRMFSSQVLAELFKAILKAVVFGCVTGSFLWHNWPRMLHLVMEPAVPAL 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
             A + +   ++ I++ ++ +   D+ W       KL+M +Q+I+DE K   G+P +KNR
Sbjct: 184 GDAMWIITACMLFIIVGLSPIVGFDVFWQLWSHLKKLRMIRQDIRDEFKNQEGDPHVKNR 243


>gi|218509883|ref|ZP_03507761.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5]
          Length = 67

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 49/57 (85%)

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           KGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 1   KGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 57


>gi|289678002|ref|ZP_06498892.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
           FF5]
          Length = 359

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 169/359 (47%), Gaps = 38/359 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++       L  L+ L+           S++ + LA 
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123
            +  +LE +  + F     S +AS  +I       LL F +  +G  ++ R+ + +   +
Sbjct: 47  ESVSRLEALLSLSFKGIDRSFAASVELIASEGFTVLLSFTLCSVGIAMLMRL-ISSWMQI 105

Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              F   +L+            K+++S  NL+N + S +K I +G  + + +     T++
Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLV 165

Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS ++IK E 
Sbjct: 166 -LLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPV 290
           KQS G+P +K  ++ +A+  +  +   A      A +++ NPTHYA+AL Y   E   P+
Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPL 284

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV   IYK+
Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 341


>gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
 gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
          Length = 539

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 141/282 (50%), Gaps = 15/282 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A ++KTE  +  K+++A  +G    S+E  L  ++L   + + F     I ++ + +   
Sbjct: 265 ASEDKTEEATPHKLQEARKKGQVAKSKEVGLAFTLLMSTLVISFLGQYAIENLQNVMTAF 324

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L      +L +  ++ ++   + + ++ +++P ++  M+ GI +  IQ   +     +KP
Sbjct: 325 LKDFMGMEL-NYKNLFYISLTIVMRSALIILPLIIPIMIMGIFANFIQTGFIFTKETLKP 383

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-------IS 178
             K+++   G K+I+S   LV  +K    + +VG +    L +NY  +L+        + 
Sbjct: 384 DIKKLNPVNGFKKIFSTRTLVELVKDLALVNVVGYVGYRFLKKNYIEILNLNNLRFPIML 443

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                I   AFF +  V+I    FIA   V D  +   ++   +KMSKQE+K+E KQ  G
Sbjct: 444 KAFKGIAVKAFFNITLVMI----FIA---VGDFIFQKKKYKKDMKMSKQEVKEEFKQQEG 496

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           +P IK + +   R     +MM++   AT++ITNPTH A +L+
Sbjct: 497 DPQIKGKIRQKQREMAMRRMMQSVPDATVVITNPTHIASSLK 538


>gi|16761664|ref|NP_457281.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143148|ref|NP_806490.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414839|ref|YP_151914.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168820416|ref|ZP_02832416.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197247812|ref|YP_002147784.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197363767|ref|YP_002143404.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|213052431|ref|ZP_03345309.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425711|ref|ZP_03358461.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580230|ref|ZP_03362056.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609307|ref|ZP_03369133.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213649913|ref|ZP_03379966.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213853013|ref|ZP_03382545.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238909654|ref|ZP_04653491.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|25322234|pir||AC0851 secretory protein (associated with virulence) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503965|emb|CAD05994.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138781|gb|AAO70350.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129096|gb|AAV78602.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095244|emb|CAR60795.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211515|gb|ACH48912.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205342919|gb|EDZ29683.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087292|emb|CBY97057.1| Surface presentation of antigens protein spaS [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 356

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++A 
Sbjct: 4   NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+  
Sbjct: 62  NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG K+++S+  + + +K+   + L   ++   +    + +  F   N + +    
Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173

Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +    + +++      L VL  D    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFK 326
           A +  +P+  +  LARSLFK
Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313


>gi|16766193|ref|NP_461808.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161615799|ref|YP_001589764.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167993122|ref|ZP_02574217.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230957|ref|ZP_02656015.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235927|ref|ZP_02660985.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168242624|ref|ZP_02667556.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261990|ref|ZP_02683963.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463978|ref|ZP_02697895.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194444022|ref|YP_002042128.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451625|ref|YP_002046847.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194468977|ref|ZP_03074961.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735131|ref|YP_002115839.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197262027|ref|ZP_03162101.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242012|ref|YP_002216856.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388611|ref|ZP_03215223.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928232|ref|ZP_03219432.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205353830|ref|YP_002227631.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858149|ref|YP_002244800.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|730801|sp|P40702|SPAS_SALTY RecName: Full=Surface presentation of antigens protein spaS
 gi|404293|emb|CAA51927.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421435|gb|AAL21767.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161365163|gb|ABX68931.1| hypothetical protein SPAB_03590 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402685|gb|ACF62907.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194409929|gb|ACF70148.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455341|gb|EDX44180.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710633|gb|ACF89854.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195633151|gb|EDX51565.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197240282|gb|EDY22902.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290674|gb|EDY30028.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197936528|gb|ACH73861.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605709|gb|EDZ04254.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322554|gb|EDZ07751.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205273611|emb|CAR38598.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205328759|gb|EDZ15523.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334405|gb|EDZ21169.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338041|gb|EDZ24805.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205349087|gb|EDZ35718.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709952|emb|CAR34306.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248023|emb|CBG25856.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995015|gb|ACY89900.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159446|emb|CBW18964.1| type III secretion system secretory apparatus [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913905|dbj|BAJ37879.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223436|gb|EFX48502.1| Surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614295|gb|EFY11226.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621641|gb|EFY18494.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624502|gb|EFY21335.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628833|gb|EFY25616.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633440|gb|EFY30182.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635984|gb|EFY32692.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639692|gb|EFY36377.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646875|gb|EFY43378.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650643|gb|EFY47048.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654745|gb|EFY51064.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658965|gb|EFY55218.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664468|gb|EFY60662.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668283|gb|EFY64440.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673737|gb|EFY69838.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677798|gb|EFY73861.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681372|gb|EFY77404.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683774|gb|EFY79784.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131239|gb|ADX18669.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193837|gb|EFZ79040.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200307|gb|EFZ85389.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203190|gb|EFZ88219.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205563|gb|EFZ90528.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210074|gb|EFZ94977.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216377|gb|EGA01104.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221124|gb|EGA05555.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226946|gb|EGA11128.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230770|gb|EGA14888.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234879|gb|EGA18965.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238918|gb|EGA22968.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241618|gb|EGA25649.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248235|gb|EGA32171.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251181|gb|EGA35054.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256065|gb|EGA39803.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263200|gb|EGA46738.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264297|gb|EGA47803.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271123|gb|EGA54551.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624618|gb|EGE30963.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628939|gb|EGE35282.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989759|gb|AEF08742.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 356

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++A 
Sbjct: 4   NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+  
Sbjct: 62  NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG K+++S+  + + +K+   + L   ++   +    + +  F   N + +    
Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIAV 173

Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +    + +++      L VL  D    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFK 326
           A +  +P+  +  LARSLFK
Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313


>gi|330950827|gb|EGH51087.1| type III secretion protein HrcU [Pseudomonas syringae Cit 7]
          Length = 359

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 168/359 (46%), Gaps = 38/359 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++       L  L+ L+           S++ + LA 
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123
            +  +LE +  + F     S +AS  +I       LL F +  +G  ++ R+ + +   +
Sbjct: 47  ESVNRLEALLSMSFQGIDRSFAASVELIASEGFSVLLSFTLCSVGIAMLMRL-ISSWMQI 105

Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              F   +L+            K+++S  NL+N + S +K I +G  + + +     T L
Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGT-L 164

Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS ++IK E 
Sbjct: 165 AVLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPV 290
           KQS G+P +K  ++ +A+  +  +   A      A +++ NPTHYA+AL Y   E   P+
Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPL 284

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV   IYK+
Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 341


>gi|167550264|ref|ZP_02344021.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324806|gb|EDZ12645.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 356

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 148/320 (46%), Gaps = 12/320 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++A 
Sbjct: 4   NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAD 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+  
Sbjct: 62  NFDQSMADYSLAVFGI------GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLS 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG K+++S+  + + +K+   + L   ++   +    + +  F   N + +    
Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNIVDIAV 173

Query: 189 FFTVRKVLIMILLFIATLTVL--DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +    + +++      L VL  D    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFK 326
           A +  +P+  +  LARSLFK
Sbjct: 294 AEKVGVPVIVDIKLARSLFK 313


>gi|818894|gb|AAB05078.1| HrpY [Pseudomonas syringae pv. syringae]
 gi|148562543|gb|ABQ88362.1| HrcU [Pseudomonas syringae pv. syringae]
          Length = 359

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 168/359 (46%), Gaps = 38/359 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++       L  L+ L+           S++ + LA 
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLALAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHV 123
            +  +LE +  + F     S +AS  +I       LL F +  +G  ++ R+ + +   +
Sbjct: 47  ESVNRLEALLSLSFQGIDRSFAASVELIASEGFSVLLSFTLCSVGIAMLMRL-ISSWMQI 105

Query: 124 KPSFKRVSLR---------EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              F   +L+            K+++S  NL+N + S +K I +G  + + +     T L
Sbjct: 106 GFLFAPKALKIDPNKINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGT-L 164

Query: 175 DFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS ++IK E 
Sbjct: 165 AVLANSDLTTYWHALVELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEY 224

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEAT---SRATIIITNPTHYALALRYIQTENDAPV 290
           KQS G+P +K  ++ +A+  +  +   A      A +++ NPTHYA+AL Y   E   P+
Sbjct: 225 KQSEGDPHVKGHRRQLAQEILNQEPSAAPKPLEDADMLLVNPTHYAVALYYRPGETPLPL 284

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV   IYK+
Sbjct: 285 IHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 341


>gi|293412209|ref|ZP_06654932.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468980|gb|EFF11471.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 337

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 113/239 (47%)

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
           + +   + +IP LL+ M   I     Q    L    +K  F  ++   G+KRI+ +  + 
Sbjct: 40  MGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVK 99

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
            F+K+ + II     I +  + +   +   +  +  S+L      +  +++  L  +  +
Sbjct: 100 EFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIV 159

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
            + D    Y  +   +KM KQE+K E K+  GNP IK++++   +  +  ++    S + 
Sbjct: 160 LIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERHQEILSEQLKSDVSNSR 219

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           ++I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +  LAR ++
Sbjct: 220 LMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIY 278


>gi|237799998|ref|ZP_04588459.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022853|gb|EGI02910.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 359

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 11/219 (5%)

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV-RKV 195
           K+++S  N+ N + S +K   +  ++   +     +++   +++  +  +HA   + R +
Sbjct: 128 KQMFSGQNITNLLMSILKASAIAAVLYTQVKPELGSLVLLANSDLQTY-WHALLELFRHI 186

Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
           L +IL  +  + + D     +    KL+MS ++IK E KQS G+P +K  ++ ++   + 
Sbjct: 187 LRVILGLLLVIAMADFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLSHEILN 246

Query: 256 HKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312
            +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  + + A +  I
Sbjct: 247 QEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDDEALALIERAKKAGI 306

Query: 313 PIFEEPSLARSLFKQVPINSAIPPVF------YKAVAQL 345
           P+ +   LAR+L+K  P      P        YK V QL
Sbjct: 307 PVVQNIWLARTLYKVKPGKYIPRPTLLIVAHIYKVVRQL 345


>gi|302185355|ref|ZP_07262028.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           syringae 642]
 gi|256259405|gb|ACU65042.1| HrcU [Pseudomonas syringae pv. syringae]
          Length = 362

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 167/367 (45%), Gaps = 61/367 (16%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K +  + K+I DA   G    S++       L  L+ L+         V S++ + +A 
Sbjct: 3   EKNQDATPKQIRDARKRGQVAQSQD-------LPKLLILV---------VVSEITLGMAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSL----SASRLVIPGLLL---FMMFGIGSYLIQRI------ 115
            +  KL+  S I   +T +      +   +V  G+ L   F +  +G  ++ R+      
Sbjct: 47  VSMEKLQ--SLIKLSMTRMDQPFLRTVGEVVTQGVWLVAAFAVLSVGVAMLMRLLGSWMQ 104

Query: 116 --PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
              +     +KPS ++++    +K+++++ +L   +   +K  ++  ++ + +     T+
Sbjct: 105 FGVLFAPEALKPSMEKLNPFSHLKQMFTLRSLTTSLSGIIKAAIIAVVMWMIVEPALGTL 164

Query: 174 LDFISANPHSIL---YHA----FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
           +  +    HS L   +HA    F  + +V   ILL +A   V D     +    +L+MS 
Sbjct: 165 VSLV----HSDLVTFWHALSKLFHQILRVTCGILLVLA---VADFAIQKYFHAKQLRMSM 217

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRA--------TIIITNPTHYALA 278
           ++IK E K S GNP IK  ++ +A     H+++    +A         ++I NPTHYA+A
Sbjct: 218 EDIKQEYKNSEGNPEIKGHRRQLA-----HELLNQAPKAPPKPVKDADVLIVNPTHYAVA 272

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           L Y   E   P +  K  +  A  + + A    IP+ +   LAR+L++ VP +  IP   
Sbjct: 273 LYYRPGETALPRIHCKNIDAGALALIEEAKRERIPVVQCIWLARTLYR-VPQDRFIPRDT 331

Query: 339 YKAVAQL 345
            +AVAQ+
Sbjct: 332 LQAVAQI 338


>gi|297621085|ref|YP_003709222.1| type III secretion inner membrane protein SctU [Waddlia
           chondrophila WSU 86-1044]
 gi|297376386|gb|ADI38216.1| type III secretion inner membrane protein SctU [Waddlia
           chondrophila WSU 86-1044]
          Length = 375

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 159/345 (46%), Gaps = 15/345 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
            KTE  + KK+ DA  +G    S++   A  F + +A ++ L  F    +         L
Sbjct: 3   EKTEKATPKKLRDAKKKGQVAKSQDFPSAFTFVTSIALILGLSGFMFSKVGGFIESTFKL 62

Query: 66  LASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           ++       ++IS ++  +     L+    VIP +    + G+    +   PV      K
Sbjct: 63  VSH------DEISVVIPTMFREALLTIFSTVIPVMAAVALMGVVVNFLSVGPVWATEVFK 116

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN--YFTMLDFISANPH 182
              K+    + +K  + I  LV  +KS +KI +   +I   + ++    T    +     
Sbjct: 117 FDIKKFDPIQNLKSKFKIKTLVELIKSCLKIGIAAWLIYGVMYKSLPVLTQAATMPIESS 176

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            +++ AF  + +V+I + +F   + VLD  +  + +  ++ M K E+K E K + G+P I
Sbjct: 177 LLIFKAF--LMEVVIKVGIFFLVVAVLDFAYQKYNFGKEMMMEKFEVKQEYKNTEGDPQI 234

Query: 243 KNRQKSIARS-RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           K+++K  A+          A  +A  +ITNP   A+A+ Y +  + AP ++  G+ ++A+
Sbjct: 235 KSKRKQTAQEIAYSDGPAAAVQKAAAVITNPVQLAIAVGYNREIDAAPYILVMGEGILAE 294

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++   A +  +PI     LA  L+ +  I   IP   Y+A+A+++
Sbjct: 295 RIVHYANKSEVPIVRNIELAHKLWLEGEIFEYIPEDTYEAMAEIL 339


>gi|254255060|ref|ZP_04948377.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124899705|gb|EAY71548.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 392

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 156/323 (48%), Gaps = 19/323 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS----DLHV 64
           +KTE  + KK  D+   G    +R+A     ++AC++        G++ V+     ++  
Sbjct: 5   SKTEEATPKKRRDSAERGQILKARDA-----VVACVMLC------GVFVVSKMSLHEIGA 53

Query: 65  LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           ++    Q   + D S  V     L ++  ++V P LL+ ++      L+Q   VL    +
Sbjct: 54  VMIDMMQNGFDVDTSSYV---KSLLVACLKVVAPVLLVCILAAAVPSLMQSKFVLATKAL 110

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K +F+ ++   G K+I+++  + +F+KS + +++    ++I    N   +L    ++ H 
Sbjct: 111 KINFEALNPVRGFKKIFNLRTVKDFVKSLLYLVVFSVAVSIVWVRNKEKLLAQFYSDLHG 170

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           ++      +  +++  L     + +LD+         +L+M+K+E+K E K++ G+P IK
Sbjct: 171 VVGLWKDLMVDLVLTCLGCALVILILDVLVEMLIHRKELRMAKEEVKRERKENEGSPEIK 230

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R+K + +  +  +       + +II NPTH A+ + +  +    P++    +N  A  +
Sbjct: 231 GRRKEMHQELLSEQDKHDIQNSKMIIANPTHVAVGIYFNPSHLPYPLVSISERNQRALAV 290

Query: 304 RKIAYEHNIPIFEEPSLARSLFK 326
           R+ A +  +P+  +  LAR ++K
Sbjct: 291 RRYAEKIGVPVIVDVPLARQIYK 313


>gi|330895854|gb|EGH28140.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 224

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFI 203
           ++N + S +K I +G  + + +     T++  ++ +  +  +HA   + R +L +IL  +
Sbjct: 1   MLNLLLSVLKAIAIGATLYVQVKPVLGTLV-LLANSDLTTYWHALVELFRHILRVILGLL 59

Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA-- 261
             + ++D     +    KL+MS ++IK E KQS G+P +K  ++ +A+  +  +   A  
Sbjct: 60  LAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEILNQEPSAAPK 119

Query: 262 -TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
               A +++ NPTHYA+AL Y   E   P++  KG++  A  +   A +  IP+ +   L
Sbjct: 120 PVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWL 179

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            R+L++   +   IP    +AV   IYK+
Sbjct: 180 TRTLYRS-KVGKYIPRPTLQAVGH-IYKV 206


>gi|28628135|gb|AAO34619.1| HrcU [Erwinia chrysanthemi]
          Length = 347

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 102 FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
            +M  +G + IQ  P+  +  +K  F R++    IK+++++  + + + + +K   +  +
Sbjct: 80  LLMRVVGGW-IQYGPLFAVEALKLDFNRLNPINQIKQMFTMRKITDMLTNLLKATTIWVV 138

Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
             + +      +++    + ++        ++ V    L  +  L V D G   + +  +
Sbjct: 139 FWLVVIPQLEWLVELAYGDLNAFWKGVENVLKSVSCTTLSALLALGVFDFGLQKYYFLKQ 198

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH----KMMEATSRATIIITNPTHYAL 277
            +M  ++I++E K S G+P +K  +KS+A+  +      +       A +++ NPT YA+
Sbjct: 199 QRMIHEDIRNEYKNSEGDPHMKGHRKSVAQEILNEPASPRAKPKVEDADLLLVNPTDYAV 258

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL Y   +   P ++ KG++  AK +   A++  +P+     LAR+L++ VP    IP  
Sbjct: 259 ALFYRPGKTPLPRILLKGEDDQAKALIARAHQAGVPVIRFIWLARTLYR-VPEGHYIPRD 317

Query: 338 FYKAVAQLIYKIYHK 352
             + VAQ +YK+  +
Sbjct: 318 TLQPVAQ-VYKVLRQ 331


>gi|28868600|ref|NP_791219.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968267|ref|ZP_03396411.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           T1]
 gi|301381804|ref|ZP_07230222.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061995|ref|ZP_07253536.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           K40]
 gi|302135077|ref|ZP_07261067.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851838|gb|AAO54914.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926905|gb|EEB60456.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           T1]
 gi|330963058|gb|EGH63318.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015106|gb|EGH95162.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 359

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 167/358 (46%), Gaps = 36/358 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++       L  L+ LL           S++ + LA+
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLL---------AVSEVTLGLAN 46

Query: 69  ATQRKLEDISHIVF------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP------ 116
            +  +L+ +  + F       ++ + L AS   +  +L F +  +G  ++ R+       
Sbjct: 47  ESVNRLQALLALTFKGIERPFMSAVELIASE-GLSVVLSFTLCSVGLAMLMRLISSWVQI 105

Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             +     +K   K++      K+++S  N++N + S +K + +G  +   +     T++
Sbjct: 106 GFLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLI 165

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +++  + L+      + VL +IL  +  + ++D     +    KL+MS ++IK E K
Sbjct: 166 LLANSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYK 225

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVL 291
           QS G+P +K  ++ +A   +  +   A      A +++ NPTHYA+AL Y   E   P++
Sbjct: 226 QSEGDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMI 285

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             KG++  A  +   A +  IP+ +   LAR+L+K V +   IP     AV   IYK+
Sbjct: 286 HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGH-IYKV 341


>gi|330872921|gb|EGH07070.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 359

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 167/358 (46%), Gaps = 36/358 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++       L  L+ LL           S++ + LA+
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLL---------AVSEVTLGLAN 46

Query: 69  ATQRKLEDISHIVF------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP------ 116
            +  +L+ +  + F       ++ + L AS   +  +L F +  +G  ++ R+       
Sbjct: 47  ESVNRLQALLALTFKGIERPFMSAVELIASE-GLSVVLSFTLCSVGLAMLMRLISSWVQI 105

Query: 117 --VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             +     +K   K++      K+++S  N++N + S +K + +G  +   +     T++
Sbjct: 106 GFLFAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLI 165

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +++  + L+      + VL +IL  +  + ++D     +    KL+MS ++IK E K
Sbjct: 166 LLANSDLATYLHALIELFQHVLRVILGLLLVIALVDFAMQKYFHAKKLRMSHEDIKKEYK 225

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVL 291
           QS G+P +K  ++ +A   +  +   A      A +++ NPTHYA+AL Y   E   P++
Sbjct: 226 QSEGDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMI 285

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             KG++  A  +   A +  IP+ +   LAR+L+K V +   IP     AV   IYK+
Sbjct: 286 HCKGEDEDALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGH-IYKV 341


>gi|293406351|ref|ZP_06650277.1| antigen surface presentation protein SpaS [Escherichia coli
           FVEC1412]
 gi|291426357|gb|EFE99389.1| antigen surface presentation protein SpaS [Escherichia coli
           FVEC1412]
          Length = 337

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 113/239 (47%)

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
           + +   + +IP LL+ M   I     Q    L    +K  F  ++   G+KRI+ +  + 
Sbjct: 40  MGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVK 99

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
            F+K+ + II     I +  + +   +   +  +  S+L      +  +++  L  +  +
Sbjct: 100 EFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIV 159

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
            + D    Y  +   +KM KQE+K E K+  G+P IK++++   +  +  ++    S + 
Sbjct: 160 LIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGSPEIKSKRRERHQEILSEQLKSDVSNSR 219

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           ++I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +  LAR ++
Sbjct: 220 LMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIY 278


>gi|71737972|ref|YP_273541.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289623686|ref|ZP_06456640.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647640|ref|ZP_06478983.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|42562005|gb|AAS20447.1| HrcU [Pseudomonas syringae pv. phaseolicola]
 gi|71558525|gb|AAZ37736.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322958|gb|EFW79048.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329919|gb|EFW85907.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330871290|gb|EGH05999.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330984961|gb|EGH83064.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 359

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 50/365 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++       L  L+ L+         V S++ + LA 
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VVSEITLGLAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117
            +  +L+ +  + F     S +AS  +I       LL F +  +G  ++ R+        
Sbjct: 47  DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106

Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                    L++N + P F         K+++S  N++N + S +K + +G  + + +  
Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159

Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
               ++  ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS +
Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284
           +IK E KQS G+P +K  ++ ++   +  +   A      A +++ NPTHYA+AL Y   
Sbjct: 219 DIKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPG 278

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E   P++  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV  
Sbjct: 279 ETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH 337

Query: 345 LIYKI 349
            IYK+
Sbjct: 338 -IYKV 341


>gi|185177891|pdb|3BZR|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
           Mutation, Space Group P 41 21 2
 gi|185177892|pdb|3BZS|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
           Mutation, Space Group P 21 21 21
          Length = 137

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 70/123 (56%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+ +PTH A+ L Y  
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKL 66

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VA
Sbjct: 67  GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126

Query: 344 QLI 346
           QLI
Sbjct: 127 QLI 129


>gi|115358968|ref|YP_776106.1| type III secretion exporter [Burkholderia ambifaria AMMD]
 gi|115284256|gb|ABI89772.1| type III secretion exporter [Burkholderia ambifaria AMMD]
          Length = 343

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 157/362 (43%), Gaps = 52/362 (14%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52
            K + P++K++ DA  +G+ P S E   ++ F  +   L             ++ L F +
Sbjct: 3   EKDQKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            G    ++ L  L+  A +      + IV       L A  + + G              
Sbjct: 63  AGAADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGG-------------- 108

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
               V+  + + P   R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+   
Sbjct: 109 ----VMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDP 164

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228
            +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS +E
Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEE 220

Query: 229 IKDEIKQSYGNPIIKNRQKSIAR----SRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           ++ E K+  G+P I+ +++ +AR    S ++ ++  A+            Y   +  +  
Sbjct: 221 VRREHKEDEGDPHIEAKRRQLAREAQFSSLQDRIGFASVVVYSSSVAVALYYGGIGTL-- 278

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
               P ++A+G+   A+++ ++A +   P      LA +L+   P    I    ++ VAQ
Sbjct: 279 ----PWVLARGEGEAAERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQ 334

Query: 345 LI 346
           L+
Sbjct: 335 LL 336


>gi|257487237|ref|ZP_05641278.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|238577784|gb|ACR46695.1| HrcU [Pseudomonas syringae pv. tabaci]
 gi|331009149|gb|EGH89205.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 359

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 50/365 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++       L  L+ L+         V S++ + LA 
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VVSEITLGLAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117
            +  +L+ +  + F     S +AS  +I       LL F +  +G  ++ R+        
Sbjct: 47  DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106

Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                    L++N + P F         K+++S  N++N + S +K + +G  + + +  
Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159

Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
               ++  ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS +
Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILHVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284
           +IK E KQS G+P +K  ++ ++   +  +   A      A +++ NPTHYA+AL Y   
Sbjct: 219 DIKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPHPVEEADMLLVNPTHYAVALYYRPG 278

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E   P++  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV  
Sbjct: 279 ETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH 337

Query: 345 LIYKI 349
            IYK+
Sbjct: 338 -IYKV 341


>gi|330957485|gb|EGH57745.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 359

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 165/358 (46%), Gaps = 36/358 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++       L  L+ L+           S++ + LA 
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQD-------LGKLLVLM---------AVSEITLSLAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIP------- 116
            +  +LE +  + F     + +AS  ++       LL F +  +G  ++ R+        
Sbjct: 47  DSVNRLEALLTLSFQGIDRTFAASVELVASEGLSVLLSFTLCSVGIAMLMRLIGSWVQIG 106

Query: 117 -VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +     +K    +++     K+++S  NL+N + S +K + +G  +   +      ++ 
Sbjct: 107 FLFAPKALKVDINKINPFSHAKQMFSGQNLLNLLLSILKAVAIGATLYTQVKPALGALI- 165

Query: 176 FISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
            ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS ++IK E K
Sbjct: 166 LLANSDLTTYWHALVDLFRHILRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYK 225

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVL 291
           QS G+P +K  ++ +A   +  +   A      A +++ NPTHYA+AL Y   E   P++
Sbjct: 226 QSEGDPHVKGHRRQLAHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRAGETPLPLI 285

Query: 292 VAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV   IYK+
Sbjct: 286 HCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH-IYKV 341


>gi|260775664|ref|ZP_05884560.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608080|gb|EEX34249.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 352

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 64/351 (18%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREAS-------LFSSILACLIYLLFFFSPGIYSVTSD 61
            KTE P+ KKI+D+   G    + +          F  ++AC  +L+      +Y   + 
Sbjct: 3   EKTEKPTQKKIQDSRKRGQVAQTPDIPKLLACVLTFEVLVACSEWLMAELKTLVYMPITL 62

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPVLNL 120
            +          LE   H++FL          +VIP      + G  G +     P    
Sbjct: 63  FNQPFEHGFLSVLEVAKHVLFLFI-------LIVIPVSFFAALIGRWGQFGFLFAP---- 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  F +++    +K+++S   L   + +  K IL+  +  I L +            
Sbjct: 112 EALKLDFNKLNPFSQLKQLFSGQKLTEVLNNIFKSILIFVVFYILLND------------ 159

Query: 181 PHSILYHAFFTV------RKVLIMILLFIATLTV----------LDIGWSYHQWYSKLKM 224
               L HA F +      R  L  I LFI    V          LD          +LKM
Sbjct: 160 ----LAHAVFKLPNLPLDRMWLAAIDLFIYVARVCLLLLLAPAILDFALKKFFHLKQLKM 215

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT--------IIITNPTHYA 276
            KQE+K E K S G+P +K++     R ++  +++E + + T        +++ NPTH+A
Sbjct: 216 DKQEVKQEFKDSEGDPFVKSQ-----RRQLGMELVEGSPQTTNASMDEMDMLVVNPTHFA 270

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           + L Y       PV+ AKG++  A ++ + A    +P+     LAR+L++Q
Sbjct: 271 VGLHYNPGVTPLPVVGAKGKDREALELIQQADHSGVPVIRYVWLARTLYQQ 321


>gi|171322217|ref|ZP_02911064.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
 gi|171092454|gb|EDT37799.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
          Length = 343

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 154/359 (42%), Gaps = 46/359 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52
            K + P++K++ DA  +G+ P S E   ++ F  +   L             ++ L F +
Sbjct: 3   EKDQKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            G    ++ L  L+  A +      + IV       L A  + + G              
Sbjct: 63  AGAADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGG-------------- 108

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
               V+  + + P   R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+   
Sbjct: 109 ----VMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDP 164

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228
            +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS +E
Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEE 220

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR-YIQTEND 287
           ++ E K+  G+P I+ +++ +AR     +      R           ++A+  Y      
Sbjct: 221 VRREHKEDEGDPHIEAKRRQLARE---AQFSSLPDRIGFASVVVYSSSVAVALYYGGVGT 277

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            P ++A+G+   A+++ ++A +   P      LA +L+   P    I    ++ VAQL+
Sbjct: 278 LPWVLARGEGEAAERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLL 336


>gi|307947535|ref|ZP_07662868.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4]
 gi|307769353|gb|EFO28581.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4]
          Length = 350

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 159/358 (44%), Gaps = 22/358 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  + K    +   +  A  +G    S++       L  L +++  +   +   ++
Sbjct: 1   MSGGDTSEEKNLPATEHTLRKAREKGQVAQSKDFVTMLITLGGLFFVIMAWPSFVRMFSN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR--IPVL 118
            L   L    Q +LED    +F+++ L    S  +IP +++ ++  I + ++ +  IP  
Sbjct: 61  SLDFAL-RGFQMELEDSYRPMFVVSILETLYS--LIPLVVILVLTAILANILHKKGIP-F 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI----ILVGTIITISLTENYFTML 174
           +++ + P FK+++   G K+++    +  F  S +K+    ++ G  I ++L        
Sbjct: 117 SMHPIVPDFKKINPASGFKKMFGARGMTEFSVSLLKVLIWFVVAGMFIWLALPA------ 170

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATL----TVLDIGWSYHQWYSKLKMSKQEIK 230
             I  +P             +LI I+L  A L     VLD+      +  + KM++ ++K
Sbjct: 171 --ILNSPICEFPCTTAVTNDLLIKIILAAAILLVIGGVLDLPLQEALFKKENKMTRTQLK 228

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPV 290
            E+K++ GNP  K+ +K   +   +            +I +    A+ALR+   +   P+
Sbjct: 229 KELKETMGNPEYKSARKEAHKEMTQVNTTAGKDATANLIVSGADMAIALRFHAEDTPVPI 288

Query: 291 LVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +VAKG+     ++     + ++PI  EP LA+ LF+ +     I    ++ +A LI +
Sbjct: 289 VVAKGRGEQGDEILASGGQMSVPIEHEPELAQDLFRTLLPGQQIEERQFQKIALLIIR 346


>gi|11276519|gb|AAG33887.1| HrcU [Pseudomonas syringae pv. tomato]
          Length = 311

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 5/230 (2%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +K   K++      K+++S  N++N + S +K + +G  +   +     T++   +++  
Sbjct: 66  LKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLA 125

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           + L+      + VL +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +
Sbjct: 126 TYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHV 185

Query: 243 KNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           K  ++ +A   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  
Sbjct: 186 KGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDED 245

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +   A +  IP+ +   LAR+L+K V +   IP     AV   IYK+
Sbjct: 246 ALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGH-IYKV 293


>gi|292488070|ref|YP_003530947.1| surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
 gi|291553494|emb|CBA20539.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
          Length = 363

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 14/321 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLL 66
            KTE P+ KK +D+  +G++   ++     ++++   +LL    FS  I   T+    +L
Sbjct: 3   QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMDFSRFIDCYTN----IL 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              +   + D     F+L  + +    L  P + +  + G+ + L Q    +    +K +
Sbjct: 59  IDVSSVNIND-----FMLQMMYIFLG-LSFPLIGICTLSGMIATLCQTRFTIATQALKLN 112

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTENYFTMLDFISANPHSIL 185
           FK ++  EG+KRI+S+  +  F+KS   +++   T   + + +    ++   +     I+
Sbjct: 113 FKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIV 172

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                TV+ V I I   +  L   D    Y      LKM K E+K E K+S GNP IK+ 
Sbjct: 173 SMLSLTVKAVTIFIAYSLVVLCA-DFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSA 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +  + M A  ++++I+ NPTH A+A+ +       P +  +  N  A+ +  
Sbjct: 232 RRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLV 291

Query: 306 IAYEHNIPIFEEPSLARSLFK 326
            A +  IP+     L R L+K
Sbjct: 292 YAEKIGIPVVRNIFLTRRLYK 312


>gi|312172198|emb|CBX80455.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           ATCC BAA-2158]
          Length = 363

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 14/321 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLL 66
            KTE P+ KK +D+  +G++   ++     ++++   +LL    FS  I   T+    +L
Sbjct: 3   QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMDFSRFIDCYTN----IL 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              +   + D     F+L  + +    L  P + +  + G+ + L Q    +    +K +
Sbjct: 59  IDVSSVNIND-----FMLQMMYIFLG-LSFPLIGICTLSGMIATLCQTRFTIATQALKLN 112

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTENYFTMLDFISANPHSIL 185
           FK ++  EG+KRI+S+  +  F+KS   +++   T   + + +    ++   +     I+
Sbjct: 113 FKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIV 172

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                TV+ V I I   +  L   D    Y      LKM K E+K E K+S GNP IK+ 
Sbjct: 173 SMLSLTVKAVTIFIAYSLVVLCA-DFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSA 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +  + M A  ++++I+ NPTH A+A+ +       P +  +  N  A+ +  
Sbjct: 232 RRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLV 291

Query: 306 IAYEHNIPIFEEPSLARSLFK 326
            A +  IP+     L R L+K
Sbjct: 292 YAEKIGIPVVRNIFLTRRLYK 312


>gi|167743198|ref|ZP_02415972.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 14]
          Length = 362

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RYAEACGVPVVRNVALARSIYRNSP 315


>gi|188534807|ref|YP_001908604.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis
           Et1/99]
 gi|188029849|emb|CAO97730.1| export protein for peptides using the type III secretion system
           [Erwinia tasmaniensis Et1/99]
          Length = 371

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 32/329 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  D+  +G    S++    +++LA + YL        Y++     +   S
Sbjct: 3   EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLA-------YAINFHPFISFYS 55

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              R+ + IS   FL+  + +  + L +P + +  + G    L+Q    +    +K +FK
Sbjct: 56  LVLREGDKISLNDFLVELMRVFFT-LSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFK 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVG----TIITISLTEN---YFTMLDFISANP 181
            ++  +G K+I+S+  +   +KS + +I+      ++I + L +    Y   +D +    
Sbjct: 115 ALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAISIYNGSIDVL---- 170

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             I      T++ V+I I   +  L ++D    Y      +KM K E+K E K+S GNP 
Sbjct: 171 --ISVWTALTMKAVMIFIAWSVFVL-LIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPE 227

Query: 242 IKNRQKSIARSRIRHKM-----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
           IK      AR R  H++     M A   + +++ NPTH A+A+ +       P +  +  
Sbjct: 228 IKG-----ARRRAHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRST 282

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           N+ A+     A +  IP+     LAR L+
Sbjct: 283 NMKARAAIAYAEKIGIPVVRYIPLARRLY 311


>gi|229138469|ref|ZP_04267058.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
 gi|228645006|gb|EEL01249.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
          Length = 259

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 129/261 (49%), Gaps = 15/261 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIG--KNTDSTEYFYLMGILLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQ---DIKMKKEEVKQEHKDNEGDPQV 233

Query: 243 KNRQKSI----ARSRIRHKMM 259
           K ++K++     + ++R + M
Sbjct: 234 KGKRKTLCTPYCKGQLRRRWM 254


>gi|3282784|gb|AAC25072.1| HrcU [Pseudomonas syringae pv. phaseolicola]
          Length = 359

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 167/365 (45%), Gaps = 50/365 (13%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++       L  L+ L+         V S++ + LA 
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VISEITLGLAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117
            +  +L+ +  + F     S +AS  +I       LL F +  +G  ++ R+        
Sbjct: 47  DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106

Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                    L++N + P F         K+++S  N++N + S +K + +G  + + +  
Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159

Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
               ++  ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS +
Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQT 284
           +IK E KQS G+P +K  ++ ++   +  +   A      A +++ NPTHYA+AL Y   
Sbjct: 219 DIKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPG 278

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E   P++  KG++     +   A +  IP+ +   L R+L++   +   IP    +AV  
Sbjct: 279 ETPLPLIHCKGEDEEGLALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH 337

Query: 345 LIYKI 349
            IYK+
Sbjct: 338 -IYKV 341


>gi|167820372|ref|ZP_02452052.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 91]
          Length = 365

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|185177890|pdb|3BZP|A Chain A, Crystal Structural Of The Mutated N262a Escu C-Terminal
           Domain
          Length = 137

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 69/123 (56%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+  PTH A+ L Y  
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKAPTHIAICLYYKL 66

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VA
Sbjct: 67  GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126

Query: 344 QLI 346
           QLI
Sbjct: 127 QLI 129


>gi|167828744|ref|ZP_02460215.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 9]
          Length = 358

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A ++       +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|53716465|ref|YP_106123.1| surface presentation of antigens protein SpaS [Burkholderia mallei
           ATCC 23344]
 gi|67641434|ref|ZP_00440213.1| type III secretion system protein BsaZ [Burkholderia mallei GB8
           horse 4]
 gi|124382305|ref|YP_001025867.1| surface presentation of antigens protein SpaS [Burkholderia mallei
           NCTC 10229]
 gi|126446476|ref|YP_001077952.1| surface presentation of antigens protein SpaS [Burkholderia mallei
           NCTC 10247]
 gi|167004213|ref|ZP_02269980.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20]
 gi|254176483|ref|ZP_04883141.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
           10399]
 gi|254200989|ref|ZP_04907354.1| type III secretion system protein BsaZ [Burkholderia mallei FMH]
 gi|254204953|ref|ZP_04911306.1| type III secretion system protein BsaZ [Burkholderia mallei JHU]
 gi|254359072|ref|ZP_04975344.1| type III secretion system protein BsaZ [Burkholderia mallei
           2002721280]
 gi|81683780|sp|Q62B05|BSAZ_BURMA RecName: Full=Secretion apparatus protein BsaZ
 gi|205831285|sp|A2S1P8|BSAZ_BURM9 RecName: Full=Secretion apparatus protein BsaZ
 gi|206558177|sp|A3MCG6|BSAZ_BURM7 RecName: Full=Secretion apparatus protein BsaZ
 gi|52422435|gb|AAU46005.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
           23344]
 gi|126239330|gb|ABO02442.1| type III secretion system protein BsaZ [Burkholderia mallei NCTC
           10247]
 gi|147748601|gb|EDK55676.1| type III secretion system protein BsaZ [Burkholderia mallei FMH]
 gi|147754539|gb|EDK61603.1| type III secretion system protein BsaZ [Burkholderia mallei JHU]
 gi|148028259|gb|EDK86219.1| type III secretion system protein BsaZ [Burkholderia mallei
           2002721280]
 gi|160697525|gb|EDP87495.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
           10399]
 gi|238522374|gb|EEP85819.1| type III secretion system protein BsaZ [Burkholderia mallei GB8
           horse 4]
 gi|243060408|gb|EES42594.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20]
 gi|261826738|gb|ABM99347.2| type III secretion system protein BsaZ [Burkholderia mallei NCTC
           10229]
          Length = 411

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQSNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|185177893|pdb|3BZT|A Chain A, Crystal Structural Of The Mutated P263a Escu C-Terminal
           Domain
 gi|313507295|pdb|3C03|A Chain A, Crystal Structure Of The Escu C-Terminal Domain With P263a
           Mutation,Space Group P 1 21 1
          Length = 137

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 69/123 (56%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+ N TH A+ L Y  
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNATHIAICLYYKL 66

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VA
Sbjct: 67  GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126

Query: 344 QLI 346
           QLI
Sbjct: 127 QLI 129


>gi|167898806|ref|ZP_02486207.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 7894]
          Length = 367

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|167915488|ref|ZP_02502579.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 112]
          Length = 375

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|123443724|ref|YP_001007695.1| surface presentation of antigens protein SpaS [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090685|emb|CAL13561.1| putative type III secretion apparatus protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 374

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 20/332 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D+  +G +  S++  + + +L    + +  FS  +Y + S L  +L S
Sbjct: 3   EKTEKPTDKKIRDSAKKGQSFKSKDM-VAAVVLVSGAFAISGFS-SLYGLGSLLQRILLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   +E       LL  L     + V+P LL   + G    L+Q    L    VK  F 
Sbjct: 61  PSDIGVEA------LLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTMLDFISANPHSIL 185
            ++   G K+I+++ +L   +K+F+ +++  T   +  I   +  F +         S  
Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY---SKLKMSKQEIKDEIKQSYGNPII 242
            H   T       I++F+A   ++ +  +  +++     LKM KQE+K E K + G+P I
Sbjct: 175 AHLCIT------FIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHI 228

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+ ++ + +  +   +      +T ++ NPTH A+ + Y       P L+ K + L AK 
Sbjct: 229 KSARRGLHQEILSEDVKSNVRSSTFVMANPTHIAMVIYYNGDIAPVPYLMMKTRGLQAKA 288

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +   A    +P+  +  +AR L++    +S I
Sbjct: 289 VIAYAESQGVPVVRDIPVARQLWRNYCKDSFI 320


>gi|170702400|ref|ZP_02893289.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
 gi|172063760|ref|YP_001811411.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
 gi|170132694|gb|EDT01133.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
 gi|171996277|gb|ACB67195.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
          Length = 343

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 157/362 (43%), Gaps = 52/362 (14%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE---ASLFSSILACL-------------IYLLFFFS 52
            K + P++K++ +A  +G+ P S E   ++ F  +   L             ++ L F +
Sbjct: 3   EKDQKPTAKRLREARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62

Query: 53  PGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            G    ++ L  L+  A +      + IV       L A  + + G              
Sbjct: 63  AGAADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGG-------------- 108

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
               V+  + + P   R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+   
Sbjct: 109 ----VMAWSRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDP 164

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIA----TLTVLDIGWSYHQWYSKLKMSKQE 228
            +      P SIL      + K+L+++  + A     + ++DI    H++  K+KMS +E
Sbjct: 165 SVQSGFTRPMSILA----LIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEE 220

Query: 229 IKDEIKQSYGNPIIKNRQKSIAR----SRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           ++ E K+  G+P I+ +++ +AR    S ++ ++  A+            Y   +  +  
Sbjct: 221 VRREHKEDEGDPHIEAKRRQLAREAQFSSLQDRIGFASVVVYSSSVAVALYYGGIGTL-- 278

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
               P ++A+G+   A+++ ++A +   P      LA +L+   P    I    ++ VAQ
Sbjct: 279 ----PWVLARGEGEAAERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQ 334

Query: 345 LI 346
           L+
Sbjct: 335 LL 336


>gi|188534034|ref|YP_001907831.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis
           Et1/99]
 gi|188029076|emb|CAO96944.1| export protein for peptides using the type III secretion system
           [Erwinia tasmaniensis Et1/99]
          Length = 369

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 145/333 (43%), Gaps = 40/333 (12%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE P+ KK +D+  +G     ++ +    +L+   +L        Y V  D  +   + 
Sbjct: 4   KTELPTEKKRKDSARKGQTLKVKDFTTTVILLSGSYFL-------CYGVNFDDFIFFYTG 56

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
                E ++   F++   S+   +LV P + +  + GI + L+Q    +    +K +FK 
Sbjct: 57  VLNDSESLNIDGFIMEMTSIFL-KLVFPFIAICCLSGIAATLLQTRFNIASEGLKLNFKA 115

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG K+I+S+  L   +KS   +  +G  I        +++LD    N  +I     
Sbjct: 116 LNPVEGFKKIFSLRTLKECVKS---VCYLGVFICTC-----YSLLDSDLKNILAIRNAGI 167

Query: 190 FTVRKVLIMILLFIATLTVLDIGWS-----------YHQWYSKLKMSKQEIKDEIKQSYG 238
             V+ ++ M+ L +  +TV    W            Y      LKM K E+K E K++ G
Sbjct: 168 --VQLIVSMLSLTVKAVTVF-AAWGALVLCAEFIAEYFLHVKDLKMDKYEVKQERKETEG 224

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRA-----TIIITNPTHYALALRYIQTENDAPVLVA 293
           NP IKN     AR R   +++    RA     ++++ NPTH A+A+ +       P +  
Sbjct: 225 NPQIKN-----ARRRAHQEILSGEERAAIRNSSVVMANPTHIAVAIYFNPDVAPLPFIAL 279

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +  N  A+     A +  IP+     L R L++
Sbjct: 280 RVTNFKARSAISYAEKIGIPVVRNIFLTRRLYR 312


>gi|53722555|ref|YP_111540.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei K96243]
 gi|167923333|ref|ZP_02510424.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei BCC215]
 gi|217425128|ref|ZP_03456623.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|226195957|ref|ZP_03791543.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|254185170|ref|ZP_04891759.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|254301459|ref|ZP_04968903.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|81606433|sp|Q63K32|BSAZ_BURPS RecName: Full=Secretion apparatus protein BsaZ
 gi|52212969|emb|CAH39007.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|157811010|gb|EDO88180.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|184215762|gb|EDU12743.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|217391733|gb|EEC31760.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|225931850|gb|EEH27851.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
          Length = 411

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|126455636|ref|YP_001076109.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 1106a]
 gi|167850199|ref|ZP_02475707.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei B7210]
 gi|242313702|ref|ZP_04812719.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|254193747|ref|ZP_04900179.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|206558142|sp|A3P6Z9|BSAZ_BURP0 RecName: Full=Secretion apparatus protein BsaZ
 gi|126229404|gb|ABN92817.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106a]
 gi|169650498|gb|EDS83191.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|242136941|gb|EES23344.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
          Length = 411

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|134282061|ref|ZP_01768767.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|237508812|ref|ZP_04521527.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei MSHR346]
 gi|254186853|ref|ZP_04893369.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|134246590|gb|EBA46678.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|157934537|gb|EDO90207.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|235001017|gb|EEP50441.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei MSHR346]
          Length = 411

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|330879005|gb|EGH13154.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 279

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 14/218 (6%)

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL-------VGTIITISLTEN 169
           V ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L       VG     +L E+
Sbjct: 66  VFSIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMES 125

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
                  I +  + +L    FTV    +   L +  + VL   W + +   ++KMS  E 
Sbjct: 126 SRCGEGCIESTFYLVLKPLVFTV----LAAFLLVGAVDVLMQRWLFGR---EMKMSHSEQ 178

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K E K   G+P+IK  ++   R            RA+++I +   + + +RY++ E   P
Sbjct: 179 KRERKDIDGDPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVP 238

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           ++V +  +  +  +   A    I  + + SLA  + ++
Sbjct: 239 IVVCRASSQDSSTLLAEALSLGIARWPDASLAEMIARR 276


>gi|292899281|ref|YP_003538650.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199129|emb|CBJ46243.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
          Length = 365

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 18/268 (6%)

Query: 76  DISHIVFLLTHLSLSASRLVIPGLLLFMMF----------------GIGSYLIQRIPVLN 119
           D S  +   T++ +  S + I   +L MM+                G+ + L Q    + 
Sbjct: 48  DFSRFIDCYTNILIDVSSVNINDFMLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIA 107

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG-TIITISLTENYFTMLDFIS 178
              +K +FK ++  EG+KRI+S+  +  F+KS   +++   T   + + +    ++   +
Sbjct: 108 TQALKLNFKALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYA 167

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                I+     TV+ V I I   +  L   D    Y      LKM K E+K E K+S G
Sbjct: 168 GIAQLIVSMLSLTVKAVTIFIAYSLVVLCA-DFIMEYFLHVKDLKMDKHEVKQERKESDG 226

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP IK+ ++   +  +  + M A  ++++I+ NPTH A+A+ +       P +  +  N 
Sbjct: 227 NPQIKSARRRAHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNF 286

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFK 326
            A+ +   A +  IP+     L R L+K
Sbjct: 287 KARAVLVYAEKIGIPVVRNIFLTRRLYK 314


>gi|76818361|ref|YP_335733.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 1710b]
 gi|254264647|ref|ZP_04955512.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
 gi|123597194|sp|Q3JL20|BSAZ_BURP1 RecName: Full=Secretion apparatus protein BsaZ
 gi|76582834|gb|ABA52308.1| surface presentation of antigens protein [Burkholderia pseudomallei
           1710b]
 gi|254215649|gb|EET05034.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
          Length = 411

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|126443467|ref|YP_001063158.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 668]
 gi|206558186|sp|A3NLD7|BSAZ_BURP6 RecName: Full=Secretion apparatus protein BsaZ
 gi|126222958|gb|ABN86463.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 668]
          Length = 406

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|167907134|ref|ZP_02494339.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei NCTC 13177]
          Length = 411

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACL-IYLLFFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A + I      +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|85058550|ref|YP_454252.1| surface presentation of antigens protein SpaS [Sodalis glossinidius
           str. 'morsitans']
 gi|45504758|gb|AAS66849.1| YsaU [Sodalis glossinidius]
 gi|84779070|dbj|BAE73847.1| type III secretion apparatus SpaS [Sodalis glossinidius str.
           'morsitans']
          Length = 370

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 157/337 (46%), Gaps = 30/337 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF--FSPGIYSVTSDLHVLL 66
            KTE P+ K+  ++  +G +   ++ +    ++  + YL +   F P I       +V+L
Sbjct: 3   EKTEKPTEKRSRESAQKGQSFKVKDVTTTVVLIGGIAYLGYGMDFQPFIAFYN---NVVL 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                   E +S+  +L++ L++   +L +P + +  + G  S L+Q   V+    +K +
Sbjct: 60  NG------ERLSYQAYLIS-LAMLFMQLTLPIVAVCFIAGTFSTLLQTRMVIATKAIKLN 112

Query: 127 FKRVSLREGIKRIYSINNLVNFMKS--FVKIILVGTIITISLTENYFT------MLDFIS 178
           F  ++  +G+KRI+++  +   +K+  +V + +VG         NYF       +L    
Sbjct: 113 FDALNPVKGLKRIFNLRAVKELVKTLCYVAVFVVGV--------NYFQSHYLKELLSIYH 164

Query: 179 ANPHSILY-HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
            N   ++   +   V+ V I + + +  L VLD    Y   +  +KM K E+K E K++ 
Sbjct: 165 GNIWQVIRIWSELAVKLVFIYVGVSLIVL-VLDGLCEYFLQFKDMKMEKHEVKQEHKENE 223

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK+ +++     +      A   + +I+ NPTH AL + +       P +  +  N
Sbjct: 224 GNPEIKSARRNAHFELLSGAEQAAIRSSEMILANPTHIALGIFFNPDVAMLPFITLRATN 283

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           + A+ +   A +  +P+     LAR L+K   ++S I
Sbjct: 284 MKARAIIAYAEKVGVPVVRSIPLARRLYKNYTVHSFI 320


>gi|167724223|ref|ZP_02407459.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei DM98]
          Length = 352

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A ++       +P +  +T      + 
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALIVIATGALAAPALVDLTRIAAEFVR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQLNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L +LD    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-ILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGV-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|284007395|emb|CBA72801.1| type III secretion system protein SpaS [Arsenophonus nasoniae]
          Length = 345

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 152/318 (47%), Gaps = 10/318 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G +  S++      +++CLI+L   +     + T+ + +   +
Sbjct: 4   NKTEKPTPKKLKDAAQKGKSFKSKDL-----VISCLIFLGCLYLTNYINFTTIIEIW--A 56

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            T +    I+ + +    L  +A ++ +P L L ++  + + + Q    +    +K  F 
Sbjct: 57  NTLKNNHSITPLNYTFV-LFFTALKIFLPFLFLCILIIMLTTMAQTGFKIATKVLKFDFN 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+K+I+SI  + +F+K+F+ II+   +  I    N   +   I  N  S+    
Sbjct: 116 NLNPINGVKKIFSIRTIKDFIKTFLFIIIFFIVTYIYWNNNKKIIFSQIYLNIESVFIVW 175

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V   +I++LL    + +LD    Y      LKM K E+K E K+  GNP IK+++K 
Sbjct: 176 KELVSNFIIILLLSSFIILILDAVAEYFIHIKDLKMDKNEVKREYKEQEGNPEIKSKRKE 235

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA-PVLVAKGQNLIAKKMRKIA 307
           +    +  ++      +  +I NPTH  + + Y+  +  A P++     N  A   R  A
Sbjct: 236 LHVEILSEQVKSDIESSKFMIANPTHIIIGI-YLNPQIVAIPMVSVLETNQRALAARAYA 294

Query: 308 YEHNIPIFEEPSLARSLF 325
            +  +P+ E   LAR ++
Sbjct: 295 EKEGVPVIENIVLARRIY 312


>gi|211939072|pdb|2W0R|A Chain A, Crystal Structure Of The Mutated N263d Yscu C-Terminal
           Domain
          Length = 144

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 72/126 (57%)

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           +LKMSK EIK E K+  G+P IK++++   +      M E   R+++++ +PTH A+ + 
Sbjct: 3   ELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVADPTHIAIGIL 62

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP    +
Sbjct: 63  YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122

Query: 341 AVAQLI 346
           A A+++
Sbjct: 123 ATAEVL 128


>gi|15088606|gb|AAK84117.1|AF369954_15 YsaU [Yersinia enterocolitica]
 gi|16799075|gb|AAF82331.2|AF005744_10 YsaU [Yersinia enterocolitica]
          Length = 374

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 20/332 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D+  +G +  S++      ++A    +  F S  +Y + S L  +L S
Sbjct: 3   EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAISGFSS--LYGLGSLLQRILLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   +E    ++  L  L L A   V+P LL   + G    L+Q    L    VK  F 
Sbjct: 61  PSDIGVE---ALLDKLYSLFLQA---VVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGT---IITISLTENYFTMLDFISANPHSIL 185
            ++   G K+I+++ +L   +K+F+ +++  T   +  I   +  F +         S  
Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY---SKLKMSKQEIKDEIKQSYGNPII 242
            H   T       I++F+A   ++ +  +  +++     LKM KQE+K E K + G+P I
Sbjct: 175 AHLCIT------FIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHI 228

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+ ++ + +  +  ++      +T ++ NPTH A+ + Y       P L+ K + L AK 
Sbjct: 229 KSARRGLHQEILSEEVKSNVRGSTFVMANPTHIAMVIYYNDDIAPLPYLMMKTRGLQAKA 288

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +   A    +P+  +  +AR L++    +S I
Sbjct: 289 VIAYAESQGVPVVRDIPVARQLWRNYRKDSFI 320


>gi|34498076|ref|NP_902291.1| surface presentation of antigens protein SpaS [Chromobacterium
           violaceum ATCC 12472]
 gi|34103931|gb|AAQ60291.1| secretory protein / flagellar biosynthetic protein flhB
           [Chromobacterium violaceum ATCC 12472]
          Length = 353

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 14/320 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G +  SR+  +    L  + YL+ F S  +  +       LA 
Sbjct: 4   NKTEKPTRKKLQDAAKKGQSFKSRDLVVACLTLCGVAYLVSFGS--LVELMGIFRQALAG 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             Q  +   +  VF      L    L  +    L ++   G  L      LNL  + P  
Sbjct: 62  GFQLDMRGYAQAVFWQGLKLLLPIFLLCVAASALPVLLQTGFVLASEALKLNLEALNPI- 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
                  G K+++S+  +   +K+   + L   ++ ++L       L F   N   +   
Sbjct: 121 ------NGFKKLFSLRTVKEAVKAL--LYLASFVVAVALIWRKHKALLFAQLNGSVMDIA 172

Query: 188 AFFTVRKVLIMILL--FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           A +    + +++     I  + +LD    Y  +   +KM KQE+K E+K+  GNP IK+R
Sbjct: 173 AVWRELLLSLVLTCLGCIVLILILDALAEYFLFMKDMKMDKQEVKREMKEQEGNPEIKSR 232

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++      +  ++      + +II NPTH A+ + +       P +     N  A  +R 
Sbjct: 233 RREAHFELLSEQVKSDVENSRLIIANPTHIAIGIYFRPELVPIPFVSVMETNQRALAVRA 292

Query: 306 IAYEHNIPIFEEPSLARSLF 325
            A +  +P+  +  LAR + 
Sbjct: 293 YAEKVGVPVVRDVPLARRIL 312


>gi|161502069|ref|YP_001569181.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863416|gb|ABX20039.1| hypothetical protein SARI_00086 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 356

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 147/322 (45%), Gaps = 16/322 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++A 
Sbjct: 4   NKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIIIAE 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             ++ + D S  V  +        + +IP +LL ++      L+Q   VL    +K +  
Sbjct: 62  NFEQSMADYSLAVLGV------GLKYLIPFMLLCLVCSALPTLLQTGFVLATEALKLNLS 115

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH----SI 184
            ++  EG K+++S+  + + +K+   + L   ++   +    + +  F   N +    ++
Sbjct: 116 ALNPVEGAKKLFSMRTVKDTVKTL--LYLSSFVVAAIICWKKYKVEIFSQLNGNVMGIAV 173

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           ++        +  +    I  L  LD    Y      +KM K+E+K E+K+  GNP +K+
Sbjct: 174 IWRELLLALVLTCLACALIVLL--LDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKS 231

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +++ +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R
Sbjct: 232 KRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPFPMISVYETNQRALAVR 291

Query: 305 KIAYEHNIPIFEEPSLARSLFK 326
             A +  +P+  +  LARSLFK
Sbjct: 292 SYAEKVGVPVIVDIKLARSLFK 313


>gi|171319013|ref|ZP_02908140.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
 gi|171095768|gb|EDT40721.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
          Length = 250

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 116/257 (45%), Gaps = 32/257 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISRE------ASLFSSILACLIYLLFFFSPGIYSVTSDL 62
            K+E P+  ++  A  EG    SR+       +++   LA   YL F  +  +     D+
Sbjct: 3   EKSEQPTDNRLRQARREGQISKSRDLTQALAGAMWPLALAGTFYLGFGTAVRVMQGVLDM 62

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-------LLFMMFGIGSYLIQRI 115
              +     R+           T +  + SR+++P +       L+  +  I   L+Q  
Sbjct: 63  ---IGEGAAREP----------TRIDFAVSRVIVPTITLSVGVALVGAVTAIAMELLQTK 109

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            +L++  + P+  +++    +K I+S+  LV+  K+ VK+  +GT   I +      +  
Sbjct: 110 GLLSVKPIVPNLGKLNPISQLKNIFSLRTLVDLAKNLVKVTAIGTCTLIVIRLGLPDLAG 169

Query: 176 FISANPHSIL---YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
             + +  +IL    H  F +      +L+ +A +   D+G+  +++   LKM+K E+K +
Sbjct: 170 LAAVDAPAILAVTTHLLFKIATASAGVLVVLAAI---DVGYQKYEYIKGLKMTKDEVKRD 226

Query: 233 IKQSYGNPIIKNRQKSI 249
            KQ  G+P+IK  ++ +
Sbjct: 227 YKQQEGDPLIKGERRRL 243


>gi|167577442|ref|ZP_02370316.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis TXDOH]
          Length = 381

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A ++      S P +  +T        
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALVVIATGALSAPALVDLTRVAAEFTR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +          L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRIDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  ++ + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPIKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L ++D    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-IVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|83716929|ref|YP_439036.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis E264]
 gi|167615593|ref|ZP_02384228.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis Bt4]
 gi|257142144|ref|ZP_05590406.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis E264]
 gi|123539589|sp|Q2T713|BSAZ_BURTA RecName: Full=Secretion apparatus protein BsaZ
 gi|83650754|gb|ABC34818.1| type III secretion system protein BsaZ [Burkholderia thailandensis
           E264]
          Length = 381

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 16/325 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS-PGIYSVTSDLHVLLA 67
            KTE P++KK+ DA  +G    +R+      I+A ++      S P +  +T        
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARD------IVALVVIATGALSAPALVDLTRVAAEFTR 56

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A+     +          L L   R+  P +LL    G    L+Q    L +  ++   
Sbjct: 57  IASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRFDL 113

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
             +   +G+KR++S  ++ + +K+ + + +    + +     +  +     A P ++L H
Sbjct: 114 TALDPVKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARP-ALLGH 172

Query: 188 AF--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TVR VL+ +L  +  L ++D    Y  ++ +LKM K E+K E K+S GN  IK++
Sbjct: 173 MWIVLTVRLVLLFLLCALPVL-IVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSK 231

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
           ++ I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + 
Sbjct: 232 RREIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVI 290

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVP 329
           + A    +P+    +LARS+++  P
Sbjct: 291 RHAEACGVPVVRNVALARSIYRNSP 315


>gi|149912839|ref|ZP_01901373.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b]
 gi|149813245|gb|EDM73071.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b]
          Length = 119

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 51/82 (62%)

Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           A ++I NPTHYA+AL + +  N APV VAKG + +A  +R++A +H +P+  +P  AR++
Sbjct: 24  ADVVIVNPTHYAVALTWSRAPNSAPVCVAKGVDYMALAIREMAEDHGVPVRSDPPTARAI 83

Query: 325 FKQVPINSAIPPVFYKAVAQLI 346
                I   I P  Y+AVA  I
Sbjct: 84  HATTEIGMEIDPGQYQAVAAAI 105


>gi|332669212|ref|YP_004452220.1| type III secretion exporter [Cellulomonas fimi ATCC 484]
 gi|332338250|gb|AEE44833.1| type III secretion exporter [Cellulomonas fimi ATCC 484]
          Length = 400

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 79/128 (61%), Gaps = 5/128 (3%)

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKN--RQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
           + +M+ +E+K+E K++ G+P++K   R K +A SR  ++MM   + A +++ NPTH A+A
Sbjct: 213 QTRMTLREVKEEHKRTEGDPMLKGAIRSKQLAMSR--NRMMAEVANADVVLVNPTHVAVA 270

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           LRY +    AP +VAKG   +A K+R  A +  +P+ E+  LAR+L     +   IP   
Sbjct: 271 LRY-EPGTGAPRVVAKGAGAVAAKIRSAASDARVPMVEDVPLARALHAACELGQEIPAHL 329

Query: 339 YKAVAQLI 346
           + AVA+++
Sbjct: 330 FTAVARVL 337


>gi|13475308|ref|NP_106872.1| translocation protein in type III secretion system, hrcU
           [Mesorhizobium loti MAFF303099]
 gi|14026059|dbj|BAB52658.1| translocation protein in type III secretion system; HrcU
           [Mesorhizobium loti MAFF303099]
          Length = 345

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 152/350 (43%), Gaps = 17/350 (4%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+ + KT A + KK+ DA  +G  P S +        A L YL +     I     +  
Sbjct: 2   SDSSEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYL-WLRGSAIEDKCRE-A 59

Query: 64  VLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           +L     Q    D  +   + +L  L+L+    ++  L+  ++  + S L     V +L 
Sbjct: 60  LLFVDKLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVL--LASILANGGFVFSLE 117

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            + P+F +++  +G+KR+ S  ++V   K+  K+ ++G   +  L   + TM+ ++    
Sbjct: 118 PMTPNFDKINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMV-YLPFCG 176

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              L       + ++ +    +    ++D+      +  +++M+K E+  E+K   G P 
Sbjct: 177 MGCLGLVVTGAKLLIGIGAGALLAAGLIDLLVQRALFLREMRMTKTEVTRELKDQQGAPE 236

Query: 242 IKNRQKSIARSRIRHKMME----ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           +K+      R RIR +  +        AT+I    T   + LRY++ E   PVLV +   
Sbjct: 237 LKSE-----RRRIRDESADEPPLGVHHATLIFKG-TAILIGLRYVRGETGVPVLVCRADG 290

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
             A  +   A    + I +   LA  L  +  +   IP  +++ VA+ ++
Sbjct: 291 ERASHLLSEARALRLEIVDNDVLAHQLIGKTQLGRPIPMQYFEPVARALF 340


>gi|167840165|ref|ZP_02466849.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis MSMB43]
          Length = 366

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 146/324 (45%), Gaps = 14/324 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      +   +I      +P +  +T         
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDI-----VALVVIATGALAAPALVDLTRIAAEFARI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     D     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASSGAQPDPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++ +  K+ + + +    + +     +  +     A   ++L H 
Sbjct: 115 ALDPVKGMKRLFSWRSVKDAAKALLYVAVFAVTVRVFADLCHHDLFGLFRAR-AALLGHM 173

Query: 189 F--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +   T+R VL+ +L  +  L ++D    Y+ ++ +LKM K E+K E K+S GN  IK+++
Sbjct: 174 WIVLTIRLVLLFLLCALPVL-IVDAAVEYYLYHRELKMDKHEVKQEYKESEGNHEIKSKR 232

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305
           + I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + +
Sbjct: 233 REIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVIR 291

Query: 306 IAYEHNIPIFEEPSLARSLFKQVP 329
            A    + +    +LARS+++  P
Sbjct: 292 HAEACGVTVVRNVALARSIYRNSP 315


>gi|222446917|pdb|2JLH|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia
           Pestis Yscu N263a Mutant
          Length = 144

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 71/126 (56%)

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           +LKMSK EIK E K+  G+P IK++++   +      M E   R+++++  PTH A+ + 
Sbjct: 3   ELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAPTHIAIGIL 62

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP    +
Sbjct: 63  YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122

Query: 341 AVAQLI 346
           A A+++
Sbjct: 123 ATAEVL 128


>gi|312171382|emb|CBX79641.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           ATCC BAA-2158]
          Length = 371

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 20/323 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  D+  +G    S++     ++L    YL +       S TS   ++L  
Sbjct: 3   EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L D       LT L      L +P + +  + G    L+Q    +    +K +F+
Sbjct: 61  GDKISLND------FLTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114

Query: 129 RVSLREGIKRIYSINNLVNFMKS-FVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +   +G+K+I+S+  +   +KS F  ++ + T   +   +    +  +  +    I   
Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
              T++ V++ I  + A + ++D    Y   +  +KM K E+K E K+S GNP IK    
Sbjct: 175 ITLTIKAVMVFIG-WSAFVLIMDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKG--- 230

Query: 248 SIARSRIRHKM-----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             AR R  H++     M A   + +++ NPTH A+A+ +       P +  +  N+ AK 
Sbjct: 231 --ARRRAHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKA 288

Query: 303 MRKIAYEHNIPIFEEPSLARSLF 325
               A +  IP+     L R L+
Sbjct: 289 AIAYAEKIGIPVVRYIPLTRRLY 311


>gi|21492901|ref|NP_659976.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
 gi|21467326|gb|AAM54989.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
          Length = 265

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 21/260 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ND  + KT  PS  K++    EG  P S+E  +  S+LA  +Y+ +     +   T 
Sbjct: 1   MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPDILEDFTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------QR 114
                L SA +  + D   +    T ++L      +  + L +  G+ + ++      Q 
Sbjct: 61  SFDAGLQSAARADVSDAVTVGLSETGVAL------LDLIWLPLAMGLAATILVSILDGQG 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            PV +  H+   F R++  EGIKR++S+ ++  F+K  VK +L+ T    ++   YF  L
Sbjct: 115 FPV-SFKHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAIL--YF--L 169

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTV----LDIGWSYHQWYSKLKMSKQEIK 230
           + I  +P         T   +L  IL+  A + V     DI  S   +  + +M+K E +
Sbjct: 170 NSIFWSPLCGEACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEAR 229

Query: 231 DEIKQSYGNPIIKNRQKSIA 250
            E K + G+P +K+ ++ I 
Sbjct: 230 REYKDTQGDPKLKSARRQIG 249


>gi|292487274|ref|YP_003530146.1| surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
 gi|292900354|ref|YP_003539723.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200202|emb|CBJ47330.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552693|emb|CBA19738.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
          Length = 371

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 20/323 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  D+  +G    S++     ++L    YL +       S TS   ++L  
Sbjct: 3   EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L D       LT L      L +P + +  + G    L+Q    +    +K +F+
Sbjct: 61  GDKISLND------FLTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114

Query: 129 RVSLREGIKRIYSINNLVNFMKS-FVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +   +G+K+I+S+  +   +KS F  ++ + T   +   +    +  +  +    I   
Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
              T++ V++ I  + A + ++D    Y   +  +KM K E+K E K+S GNP IK    
Sbjct: 175 ITLTIKAVMVFIG-WSAFVLIIDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKG--- 230

Query: 248 SIARSRIRHKM-----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             AR R  H++     M A   + +++ NPTH A+A+ +       P +  +  N+ AK 
Sbjct: 231 --ARRRAHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKA 288

Query: 303 MRKIAYEHNIPIFEEPSLARSLF 325
               A +  IP+     L R L+
Sbjct: 289 AIAYAEKIGIPVVRYIPLTRRLY 311


>gi|3603323|gb|AAC35808.1| hrp type III pathway protein [Pseudomonas syringae pv. glycinea]
          Length = 325

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 186 YHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +HA   + R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K 
Sbjct: 142 WHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKG 201

Query: 245 RQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
            ++ ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A 
Sbjct: 202 HRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPCETPLPLIHCKGEDEEAL 261

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +   A    IP+     L R+L++   +   IP    +AV   IYK+
Sbjct: 262 ALIARAKNAGIPVVHSIWLTRTLYR-AKVGKYIPRPTLQAVGH-IYKM 307


>gi|228900351|ref|ZP_04064580.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
 gi|228859238|gb|EEN03669.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
          Length = 259

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 11/248 (4%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  K  D +   +L+  L L  S    P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIG--KNTDSTEYFYLMGMLLLKVS---APILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDI---GWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                 ++ + + IL+ +  L+++D     W Y Q    +KM K+E+K E K + G+P +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQ---DIKMKKEEVKREHKDNEGDPQV 233

Query: 243 KNRQKSIA 250
           K ++K++ 
Sbjct: 234 KGKRKTLC 241


>gi|74314954|ref|YP_313372.1| surface presentation of antigens protein SpaS [Shigella sonnei
           Ss046]
 gi|82524599|ref|YP_406194.1| surface presentation of antigens protein SpaS [Shigella dysenteriae
           Sd197]
 gi|187734501|ref|YP_001883219.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94]
 gi|194435373|ref|ZP_03067572.1| Spa40 [Shigella dysenteriae 1012]
 gi|32307049|gb|AAP79019.1| Spa40 [Shigella flexneri]
 gi|73858431|gb|AAZ91137.1| Spa40 [Shigella sonnei Ss046]
 gi|81243997|gb|ABB64706.1| Spa40 [Shigella dysenteriae Sd197]
 gi|187426997|gb|ACD06272.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94]
 gi|194416383|gb|EDX32553.1| Spa40 [Shigella dysenteriae 1012]
 gi|320182867|gb|EFW57742.1| surface presentation of antigens protein SpaS [Shigella flexneri
           CDC 796-83]
          Length = 342

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 24/326 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G +   ++ +    IL     ++ FFS       SD+ +L   
Sbjct: 3   NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFS------LSDVMLLYRY 56

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 E I+   +    + +    +  P L   ++  +   L+Q   VL    +K  F 
Sbjct: 57  VIINDFE-INEGKYFFAVVIVFFKIIGFP-LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--------FISAN 180
            ++  +G+K+I+SI  +  F KS      +  +I ++LT  +F + D        F S +
Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKS------ILLLIILALTTYFFWINDRKIIFSQVFSSVD 168

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +++   F  + +++  L F   + +LD    +  +   + M KQEIK E  +  G+ 
Sbjct: 169 GLYLIWGGLF--KDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHF 226

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
             K+R++ +    +  +       + +++ NPTH A+ + +      AP +     N  A
Sbjct: 227 ETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCA 286

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFK 326
             +RK A E  IP   +  LAR L+K
Sbjct: 287 LAVRKYANEVGIPTVRDVKLARKLYK 312


>gi|167566195|ref|ZP_02359111.1| surface presentation of antigens protein SpaS [Burkholderia
           oklahomensis EO147]
          Length = 374

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 149/324 (45%), Gaps = 14/324 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    SR+      I A            +  V ++   + ++
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKSRDIVALVVIAAGASSAAAVVD--LTRVAAEFVRIAST 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q    +     F    L L   R+  P +L+  + G    L+Q    L +  ++    
Sbjct: 61  GAQ---PNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++   +K+ + + ++   + +     +  +     A P ++L H 
Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARP-ALLGHM 173

Query: 189 F--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +   TVR VL+ +L  +  L ++D    Y  ++ +LKM K E+K E K+S GN  IK+++
Sbjct: 174 WIVLTVRLVLLFLLCALPVL-IVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKR 232

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305
           + I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + +
Sbjct: 233 REIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVIR 291

Query: 306 IAYEHNIPIFEEPSLARSLFKQVP 329
            A    +P+    +LARS+++  P
Sbjct: 292 HAEACGVPVVRNVALARSIYRNSP 315


>gi|229195982|ref|ZP_04322734.1| Flagellar biosynthetic protein [Bacillus cereus m1293]
 gi|228587364|gb|EEK45430.1| Flagellar biosynthetic protein [Bacillus cereus m1293]
          Length = 108

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 54/82 (65%)

Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R +A E  IP+ E   LARSL
Sbjct: 16  ATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSL 75

Query: 325 FKQVPINSAIPPVFYKAVAQLI 346
           + QV  + AIP   Y AV +++
Sbjct: 76  YYQVEEDMAIPEDLYVAVIEVM 97


>gi|13449103|ref|NP_085319.1| Type III secretion protein [Shigella flexneri 5a]
 gi|31983539|ref|NP_858289.1| surface presentation of antigens protein SpaS [Shigella flexneri 2a
           str. 301]
 gi|60415918|sp|P0A1M8|SPAS_SHIFL RecName: Full=Surface presentation of antigens protein spaS;
           AltName: Full=Spa40 protein
 gi|60415919|sp|P0A1M9|SPAS_SHISO RecName: Full=Surface presentation of antigens protein spaS;
           AltName: Full=Spa40 protein
 gi|13310651|gb|AAK18475.1|AF348706_164 Type III secretion protein [Shigella flexneri 5a]
 gi|303896|dbj|BAA02832.1| spa40 [Shigella flexneri]
 gi|829083|dbj|BAA09165.1| ORF25 [Shigella sonnei]
 gi|12329100|emb|CAC05831.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella
           flexneri]
 gi|18462531|gb|AAL72303.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella
           flexneri 2a str. 301]
 gi|281603911|gb|ADA76894.1| surface presentation of antigens protein SpaS [Shigella flexneri
           2002017]
          Length = 342

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 24/326 (7%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G +   ++ +    IL     ++ FFS       SD+ +L   
Sbjct: 3   NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFS------LSDVMLLYRY 56

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 E I+   +    + +    +  P L   ++  +   L+Q   VL    +K  F 
Sbjct: 57  VIINDFE-INEGKYFFAVVIVFFKIIGFP-LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD--------FISAN 180
            ++  +G+K+I+SI  +  F KS      +  +I ++LT  +F + D        F S +
Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKS------ILLLIILALTTYFFWINDRKIIFSQVFSSVD 168

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +++   F  + +++  L F   + +LD    +  +   + M KQEIK E  +  G+ 
Sbjct: 169 GLYLIWGRLF--KDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHF 226

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
             K+R++ +    +  +       + +++ NPTH A+ + +      AP +     N  A
Sbjct: 227 ETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCA 286

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFK 326
             +RK A E  IP   +  LAR L+K
Sbjct: 287 LAVRKYANEVGIPTVRDVKLARKLYK 312


>gi|190894062|ref|YP_001984356.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
 gi|190699723|gb|ACE93806.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
          Length = 265

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 21/260 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ND  + KT  PS  K++    EG  P S+E  +  S+LA  +Y+ +     +   T 
Sbjct: 1   MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPAILEDFTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------QR 114
                L SA +  L D   +    T ++L      +  + L +  G+ + ++      Q 
Sbjct: 61  SFDSGLQSAGRADLSDAVTVGLSETGVAL------LDLIWLPLATGLAATILVSILDGQG 114

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            PV +  H+   F R++  EGIKR++S+ ++  F+K  VK +L+ T    ++   YF  L
Sbjct: 115 FPV-SFKHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAIL--YF--L 169

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTV----LDIGWSYHQWYSKLKMSKQEIK 230
           + I  +P             +L  IL+  A + V     DI  S   +  + +M+K E +
Sbjct: 170 NSIFWSPLCGEACTLSATAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEAR 229

Query: 231 DEIKQSYGNPIIKNRQKSIA 250
            E K + G+P +K+ ++ I 
Sbjct: 230 REYKDTQGDPKLKSARRQIG 249


>gi|167573305|ref|ZP_02366179.1| surface presentation of antigens protein SpaS [Burkholderia
           oklahomensis C6786]
          Length = 374

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 149/324 (45%), Gaps = 14/324 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    SR+      +   +I      +  +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKSRDI-----VALVVIAAGASSAAAVVDLTRVAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +L+  + G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++   +K+ + + ++   + +     +  +     A P ++L H 
Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARP-ALLGHM 173

Query: 189 F--FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +   T+R VL+ +L  +  L ++D    Y  ++ +LKM K E+K E K+S GN  IK+++
Sbjct: 174 WIVLTIRLVLLFLLCALPVL-IVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKR 232

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRK 305
           + I +  +  ++     ++  I+ NPTH A+ + Y+  +    P +  +  N  A  + +
Sbjct: 233 REIHQELLSEEIKANVEQSDFIVANPTHIAIGI-YVNPDIVPIPFVSVRETNARALAVIR 291

Query: 306 IAYEHNIPIFEEPSLARSLFKQVP 329
            A    +P+    +LARS+++  P
Sbjct: 292 HAEACGVPVVRNVALARSIYRNSP 315


>gi|330975860|gb|EGH75926.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 175

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
           +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ +A+  +
Sbjct: 2   ILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEIL 61

Query: 255 RHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311
             +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +   A +  
Sbjct: 62  NQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAG 121

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           IP+ +   L R+L++   +   IP    +AV   IYK+
Sbjct: 122 IPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGH-IYKV 157


>gi|222446919|pdb|2JLJ|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia
           Pestis Yscu N263a P264a Mutant
          Length = 144

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 70/126 (55%)

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           +LKMSK EIK E K+  G+P IK++++   +      M E   R+++++   TH A+ + 
Sbjct: 3   ELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIGIL 62

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP    +
Sbjct: 63  YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122

Query: 341 AVAQLI 346
           A A+++
Sbjct: 123 ATAEVL 128


>gi|86157128|ref|YP_463913.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773639|gb|ABC80476.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 343

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L+L  + P  +R+    G++R+ S + L       VK  ++  +    L     ++    
Sbjct: 109 LSLAALAPRLERLDPARGLRRLLSTSQLAAAALGLVKAAVLAALACGWLAGAAPSLAALP 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
              P + L+ +   +  +   +    A L  LD+     +    L M++ E++ E ++  
Sbjct: 169 RLGP-AALWRSPAVLGGLTWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDE 227

Query: 238 GNPIIK-NRQKSIARSRIRHKMM---EATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           G+P+ +  RQ+       RH+ +    A +RAT+++ NPTH A+AL + + +  AP +VA
Sbjct: 228 GDPLHRAERQR-------RHRALLEAPAVARATVVVVNPTHLAVALHHDRRDGGAPRVVA 280

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           KG    A ++R  A    +P+  + +LAR+L +   +   IP   Y+A A ++  +Y
Sbjct: 281 KGAGDAAARIRSAARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLY 337


>gi|284007676|emb|CBA73401.1| surface presentation of antigens protein SpaS,YscU,EscU,HrcU,SsaU
           [Arsenophonus nasoniae]
          Length = 275

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 30/230 (13%)

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           LIQ   +L    +K  FK++ + +GIKR+     L N  K+ +        + I ++  Y
Sbjct: 14  LIQSKFILATEAIKLDFKKLDIVQGIKRLVDKRALKNLFKALL-------FLAIFISSCY 66

Query: 171 FTMLDFISANPHSILYHAFFTVRKVLIMIL---------------LFIATLTVLDIGWSY 215
           F    FI +   ++L    FT RK +  I+               LF   +  LD    Y
Sbjct: 67  F----FIQSYQSTLL----FTQRKTIWHIIYDWRILTLKFVLFFLLFSLPILFLDALCEY 118

Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
              +S++KM K E+K E K++ GNP IK+ ++   +  +  +  +A +++++I+ NPTH 
Sbjct: 119 FLHHSEMKMEKHEVKREYKENEGNPEIKSARRGAHQELLNAETKQAIAQSSMILANPTHI 178

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           A+ + +    +  P++  +  N  A  ++  A +  IPI     LAR ++
Sbjct: 179 AIGIYFDPDNSILPLVAVRMANQYALAVQAYAKQIGIPIVRNIKLARQIY 228


>gi|211938988|pdb|2V5G|A Chain A, Crystal Structure Of The Mutated N263a Yscu C-Terminal
           Domain
          Length = 144

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 69/126 (54%)

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           +LK SK EIK E K+  G+P IK++++   +        E   R+++++  PTH A+ + 
Sbjct: 3   ELKXSKDEIKREYKEXEGSPEIKSKRRQFHQEIQSGNXRENVKRSSVVVAAPTHIAIGIL 62

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP    +
Sbjct: 63  YKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIE 122

Query: 341 AVAQLI 346
           A A+++
Sbjct: 123 ATAEVL 128


>gi|222446918|pdb|2JLI|A Chain A, Atomic Resolution Structure Of The Cytoplasmic Domain Of
           Yersinia Pestis Yscu, A Regulatory Switch Involved In
           Type Iii Secretion
          Length = 123

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 66/119 (55%)

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIK E K+  G+P IK++++   +      M E   R+++++ NPTH A+ + Y + E  
Sbjct: 1   EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP 60

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP    +A A+++
Sbjct: 61  LPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVL 119


>gi|157159225|ref|YP_001464194.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A]
 gi|209920314|ref|YP_002294398.1| putative type III secretion protein [Escherichia coli SE11]
 gi|256019342|ref|ZP_05433207.1| surface presentation of antigens protein SpaS [Shigella sp. D9]
 gi|293449182|ref|ZP_06663603.1| type III secretion protein SctU [Escherichia coli B088]
 gi|300815712|ref|ZP_07095936.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 107-1]
 gi|307310523|ref|ZP_07590171.1| type III secretion exporter [Escherichia coli W]
 gi|331678844|ref|ZP_08379518.1| type III secretion protein EprS [Escherichia coli H591]
 gi|332280456|ref|ZP_08392869.1| type III secretion protein EprS [Shigella sp. D9]
 gi|157081255|gb|ABV20963.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A]
 gi|209913573|dbj|BAG78647.1| putative type III secretion protein [Escherichia coli SE11]
 gi|291322272|gb|EFE61701.1| type III secretion protein SctU [Escherichia coli B088]
 gi|300531641|gb|EFK52703.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 107-1]
 gi|306909418|gb|EFN39913.1| type III secretion exporter [Escherichia coli W]
 gi|320202503|gb|EFW77073.1| surface presentation of antigens protein SpaS [Escherichia coli
           EC4100B]
 gi|323377251|gb|ADX49519.1| type III secretion exporter [Escherichia coli KO11]
 gi|324119899|gb|EGC13778.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1167]
 gi|331073674|gb|EGI44995.1| type III secretion protein EprS [Escherichia coli H591]
 gi|332102808|gb|EGJ06154.1| type III secretion protein EprS [Shigella sp. D9]
          Length = 243

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + I+     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK+++  
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232

Query: 249 IARSRIR 255
             R RIR
Sbjct: 233 --RERIR 237


>gi|253990923|ref|YP_003042279.1| type III secretion system EscU protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782373|emb|CAQ85537.1| Putative type III secretion system EscU protein [Photorhabdus
           asymbiotica]
          Length = 346

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 160/362 (44%), Gaps = 35/362 (9%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K   P++KK+ D   +G  P +  A    SI+      LFF S  ++ V      
Sbjct: 2   ESTEPKKYPPTAKKLRDLRKKGQFPKTELAEPTFSIV------LFFISISLFIV------ 49

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG----------IGSYLIQR 114
           LL S       D ++ V  + +  LS+    I   L  MM            +   +I +
Sbjct: 50  LLFS-------DFNYWVEFIVYADLSSGFDAILVSLTVMMVFFAIAKFIFFIVNWVVINK 102

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
           + VLN   +  +  +++   G K     + + N  +  ++++ +  ++     + Y   L
Sbjct: 103 V-VLNTKGIGFNLDKINPVNGFKNTLGFDAITNSFRKVLELVFLIFLLKYVF-DTYGVEL 160

Query: 175 DFIS--ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           + +   +NP   +Y   + +    ++++++   +  +D  +  +++  K +M+  E+K+E
Sbjct: 161 NKLHKVSNPSFFVYDLVYYIGGASLLMVIYGICVGAVDFLFESYRFQKKNRMTMTEMKNE 220

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K + G+P+IK  ++   R  +   M +   R T  + NPTH  + + Y    + AP+++
Sbjct: 221 MKDTEGSPLIKMERRHKMRELMNEPMTKG-RRPTFALANPTHILVPICYEPEIDQAPIVL 279

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARS-LFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +   N +A   R       +PI E+  LAR  L K     + I   FY+ +A +I  +  
Sbjct: 280 SIYTNDMALGKRSYYESLGVPIIEDKPLARKILHKMKRGENYIDKEFYRDIALIIVALNR 339

Query: 352 KK 353
           KK
Sbjct: 340 KK 341


>gi|14422432|dbj|BAB60839.1| epaS1 [Escherichia coli]
          Length = 243

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 12/247 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + ++     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYVVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK+++  
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232

Query: 249 IARSRIR 255
             R RIR
Sbjct: 233 --RERIR 237


>gi|148645122|gb|ABR01085.1| FlhB [uncultured Geobacter sp.]
          Length = 89

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 57/86 (66%)

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE K S G+P +K +QK       R +M +    A +++TNPTHYA+AL+Y + + 
Sbjct: 1   QEVKDEHKNSEGDPAVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRFKM 60

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNI 312
            APV++ KG + +A +++ +A E+N+
Sbjct: 61  AAPVVLFKGVDQMALQIKIVARENNV 86


>gi|254691438|ref|ZP_05154692.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str.
           870]
          Length = 146

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYS 141
             ++P   R+S  +G +RI+ 
Sbjct: 121 ERIRPQASRISPLKGWQRIFG 141


>gi|304412856|ref|ZP_07394454.1| type III secretion exporter [Shewanella baltica OS183]
 gi|307306020|ref|ZP_07585765.1| type III secretion exporter [Shewanella baltica BA175]
 gi|304348773|gb|EFM13193.1| type III secretion exporter [Shewanella baltica OS183]
 gi|306910893|gb|EFN41320.1| type III secretion exporter [Shewanella baltica BA175]
          Length = 348

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 155/351 (44%), Gaps = 31/351 (8%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57
           N++ + K   P+ KK+ +   +G  P +       E  +F+ I    IY +F  S   + 
Sbjct: 3   NESTEPKKYPPTEKKLRELRKKGQFPKTELAEPTMELVVFAVIFIGTIYFVFDSSNDWFE 62

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           V   L+  +++        I+  +F+L  + L+ + +              S+++    V
Sbjct: 63  VM--LYADISTGLDIIYTVIAWGIFILLMIKLAMAAI--------------SWVMLNKSV 106

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISLTENYFTM 173
           +N   +    +++S   G K I+ I  +   ++  +++I +      +  I   E   T 
Sbjct: 107 INTESLGLKMEKISPVTGAKNIFGIEAISRSLRKVLELIFLLFLLKYVFDIGGAE--LTR 164

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L  I+  P+ I Y+    V  V ++  ++  +L  +D     + +  K +M+  E+K+E+
Sbjct: 165 LAQINNVPYFI-YNLMLYVGLVSLLFFVYGVSLGCVDFMAESYHFNHKNRMTFTEMKNEM 223

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G+P +K+ +K   R  +   M +  +  T  I NPTH  + + Y +  +  PV++ 
Sbjct: 224 KETEGSPEMKSERKRQMREVMDAPMTKGRT-PTFAIANPTHILVPICYDRMIDKVPVVLK 282

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVA 343
                 A   R+     NIPI E   LAR+ +K +      IP  FY+ +A
Sbjct: 283 ITTESFALDERRRLEALNIPILEHIGLARAFYKSMRTGEDYIPKEFYRHIA 333


>gi|327398785|ref|YP_004339654.1| type III secretion exporter [Hippea maritima DSM 10411]
 gi|327181414|gb|AEA33595.1| type III secretion exporter [Hippea maritima DSM 10411]
          Length = 83

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E++AP +VAKG+  +A K+ K A +H+I I ++P LA SL+K V +N  IP
Sbjct: 8   AVALRYKNQEDNAPKVVAKGRGFLADKIEKTAKKHSIYIEKDPLLAESLYK-VKLNEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  IY
Sbjct: 67  EELYEAVAKILAYIY 81


>gi|197121152|ref|YP_002133103.1| type III secretion exporter [Anaeromyxobacter sp. K]
 gi|196171001|gb|ACG71974.1| type III secretion exporter [Anaeromyxobacter sp. K]
          Length = 343

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L+L  + P  +R+    G++R+ S   L        K  ++  +    L     ++    
Sbjct: 109 LSLAALAPRLERLDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALP 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
              P + L+ A   +  +   +    A L  LD+     +    L M++ E++ E ++  
Sbjct: 169 RLGP-AALWRAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDE 227

Query: 238 GNPIIK-NRQKSIARSRIRHKMM---EATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           G+P+ +  RQ+       RH+ +    A +RAT+++ NPTH A+AL + +    AP +VA
Sbjct: 228 GDPLHRAERQR-------RHRALLEAPAVARATVVVVNPTHLAVALHHDRRGGGAPRVVA 280

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           KG    A ++R  A    +P+  + +LAR+L +   +   IP   Y+A A ++  +Y
Sbjct: 281 KGAGEAAARIRSAARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLY 337


>gi|262274307|ref|ZP_06052118.1| type III secretion inner membrane protein HrpY [Grimontia hollisae
           CIP 101886]
 gi|262220870|gb|EEY72184.1| type III secretion inner membrane protein HrpY [Grimontia hollisae
           CIP 101886]
          Length = 344

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 157/361 (43%), Gaps = 29/361 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54
           M E+  P  K   P+ KK+ D   +G  P +       E  +F+ I+   +Y LF +S  
Sbjct: 1   MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTVIIILALYYLFEYSSE 58

Query: 55  IYS--VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
            +S  + +D+ V L S        I  +  L   L ++A   V+    +     +G  + 
Sbjct: 59  WFSAILQADVQVGLDSGYDVLWWCIGGLALL--KLVMAAFEWVMINKAVVSTEALGLKMD 116

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           +  PV   N  K  F   ++   +++I  +  L+  +K +V  +L   +  +    NY  
Sbjct: 117 KINPV---NGAKNIFGIEAISRSLRKILELLFLLFLLK-YVADVLGSKLYQLHEINNY-- 170

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
                   P+ I Y+   ++    +  L+F   +  +D     + +  K +M+  E+K+E
Sbjct: 171 --------PYFI-YYLMLSILAASVFYLIFGVCVGTVDFMAEKYHFMQKNRMTFTEMKNE 221

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K++ G+P IK  +K   R  +   + +   R    + NPTH  + + Y       PV++
Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPNFALANPTHILVPICYDPKIERVPVVL 280

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYH 351
                 +A + R      +IPI E   LAR+++ ++      +PP F++ VA +I ++  
Sbjct: 281 KICTESLALEERSRLETMDIPIIENVPLARAIYTKMKQGEDFLPPEFFRDVAIIISRLKR 340

Query: 352 K 352
           K
Sbjct: 341 K 341


>gi|323388139|gb|ADX60335.1| type III secretion protein RscU [Pseudomonas fluorescens]
          Length = 365

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK---MMEATSRA 265
           +D+    H +   ++M++ E+  E K   G+P +K +++++A+   + +    +     A
Sbjct: 203 IDMALQKHFFAKSMRMTQVEVVKEYKDMEGDPHVKGQRRALAQQLAQEEPKVKLPKLEEA 262

Query: 266 TIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
            +++ NPTH+A+AL Y   +   P+LV KG +  A+K+   A   ++P+ +   LAR+L+
Sbjct: 263 DMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAEARKLIDRAKAADVPVIQCVWLARTLY 322

Query: 326 KQVPINSAIPPVFYKAVA 343
           ++  + + IP    +AVA
Sbjct: 323 EK-KLGANIPRETLQAVA 339


>gi|225849676|ref|YP_002729910.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
 gi|225646306|gb|ACO04492.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
          Length = 92

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY + +NDAP +VAKGQ LIA+++ +IA E+ I I ++  L + +  Q+ I   IP
Sbjct: 7   AVALRYDREKNDAPEVVAKGQGLIAERIVEIAREYGIEIKQDRELVQ-ILSQLDIKQEIP 65

Query: 336 PVFYKAVAQLIYKIY 350
           P  YKAVA+++  IY
Sbjct: 66  PELYKAVAEILIFIY 80


>gi|323703510|ref|ZP_08115156.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574]
 gi|323531501|gb|EGB21394.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574]
          Length = 89

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   E+ APV+VA G+  +A  + KIA EHNIP++++  LAR+L  ++ +   IP
Sbjct: 9   AAALRYRHGEDAAPVVVAAGKGELAAAIEKIAREHNIPVYQDQHLARTL-TELGLGVEIP 67

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+ VA+++  +
Sbjct: 68  PELYEVVAKILVHV 81


>gi|312958831|ref|ZP_07773350.1| type III secretion system rscU [Pseudomonas fluorescens WH6]
 gi|311286601|gb|EFQ65163.1| type III secretion system rscU [Pseudomonas fluorescens WH6]
          Length = 365

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 128/250 (51%), Gaps = 14/250 (5%)

Query: 102 FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
           +M FGI         +     +K  FKR++    +K+++S  +L+N + S  K  L+G +
Sbjct: 105 WMQFGI---------LFAPETLKLDFKRLNPLSQLKQMFSAQSLMNLLMSIAKAFLLGLV 155

Query: 162 ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
           + + +  +   +++  +++  S +       R +L   L  +  L ++D+    H +  +
Sbjct: 156 VYLVVWPSLGALINLATSDLQSYVLALIALFRYLLHACLGLLLVLALIDLVLQKHFFAKR 215

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK---MMEATSRATIIITNPTHYALA 278
           ++M++ E+  E K   G+P +K +++S+A    + +    +     A +++ NPTH+A+A
Sbjct: 216 MRMTQVEVVKEYKDMEGDPHVKGQRRSLAYQLAQEEPKVKLPKLEEADMLVVNPTHFAVA 275

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           L Y   +   P+LV KG +  A+++   A   ++P+ +   LAR+L+ +    + IP   
Sbjct: 276 LYYRPGKTPLPLLVDKGTDAGARRLIARAKAADVPVIQCVWLARTLYTK-KRGANIPRET 334

Query: 339 YKAVAQLIYK 348
            +AVA LIY+
Sbjct: 335 LQAVA-LIYR 343


>gi|147676798|ref|YP_001211013.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Pelotomaculum thermopropionicum SI]
 gi|146272895|dbj|BAF58644.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Pelotomaculum thermopropionicum SI]
          Length = 95

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   +N APV+VA G+ L AKK+++IA +  +P++++ +LAR+L   + I   IP
Sbjct: 9   AAALRYEAGKNGAPVVVAAGRGLKAKKIKEIAEQAGVPVYQDEALARTL-HDLGIGVEIP 67

Query: 336 PVFYKAVAQLI 346
           P  Y+AVA+++
Sbjct: 68  PRLYQAVARIL 78


>gi|108762856|ref|YP_630671.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
 gi|108466736|gb|ABF91921.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
          Length = 94

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +++    A+AL+Y + ++ AP +VAKG  L A+K+R+IA EHNIP+    +LA +L++ V
Sbjct: 1   MSDDAEIAIALKYDKEKDGAPRVVAKGMRLKAEKIREIAREHNIPLMRNVNLANALYR-V 59

Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
            +   +P   Y AVA+++  +Y
Sbjct: 60  EVGQEVPEELYDAVAEVLNFVY 81


>gi|167841195|ref|ZP_02467879.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 250

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 10/142 (7%)

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT----IITISL 166
           L+Q   +L++  V P+F +++    +K I+S+  LV   K+ VK+  VG     +I ++L
Sbjct: 105 LMQTKGLLSMKPVTPNFGKLNPINQLKSIFSLRTLVELAKNLVKVAAVGACTLVVIRVAL 164

Query: 167 TE-NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
            +      +D  SA   ++     F +    I +L+    L V+D+G+  +++   LKM+
Sbjct: 165 PDLAVVATVDLPSA--LNLTTSLLFRIATASIAVLV---ALAVIDVGYQRYEYIKGLKMT 219

Query: 226 KQEIKDEIKQSYGNPIIKNRQK 247
           K E+K + KQ  G+P++K  ++
Sbjct: 220 KDEVKRDYKQQEGDPLVKGERR 241


>gi|157165363|ref|YP_001466488.1| FlhB domain-containing protein [Campylobacter concisus 13826]
 gi|112800644|gb|EAT97988.1| FlhB domain protein [Campylobacter concisus 13826]
          Length = 87

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 4/81 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +++++AP ++A G   IA K+  +A EH+IPI E+P L   L K V ++  IP
Sbjct: 8   AVALGYNRSQDNAPKVLASGAGEIANKIISLAKEHDIPIKEDPDLIEILSK-VEVDQEIP 66

Query: 336 PVFYKAVAQL---IYKIYHKK 353
           P  YKAVA++   +YKI +KK
Sbjct: 67  PNLYKAVAEIFSFLYKITNKK 87


>gi|315301909|ref|ZP_07872922.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596]
 gi|313629725|gb|EFR97845.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596]
          Length = 182

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 5/175 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L  +  LL+FF       T    V 
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLL-IVAGLLYFFGEMFIKNTIQGFVA 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L           S+ +F +        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 61  LLKQPPNLASIESYSLFYIMEFG----KVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQN 171


>gi|289547861|ref|YP_003472849.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484]
 gi|289181478|gb|ADC88722.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484]
          Length = 87

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY Q ++ APV+VAKG   +A+K+ ++A E+ +P+ E+P L  +L   V +   IP
Sbjct: 6   AVALRYHQEKDRAPVVVAKGMGDVAEKILQLAKEYGVPVVEDPQLVTALMG-VELLEEIP 64

Query: 336 PVFYKAVAQLI 346
           P  Y+AVAQ++
Sbjct: 65  PRLYRAVAQIL 75


>gi|197286514|ref|YP_002152386.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|227357588|ref|ZP_03841941.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis
           ATCC 29906]
 gi|194684001|emb|CAR45289.1| putative type III secretion system protein [Proteus mirabilis
           HI4320]
 gi|227162298|gb|EEI47302.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis
           ATCC 29906]
          Length = 353

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 141/329 (42%), Gaps = 34/329 (10%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++D+  +G +  S+E     S L   I +++ F+                
Sbjct: 3   EKTEKPTQKKLDDSAKKGQSFKSKE---LVSGLVYFIGVIYLFN---------------- 43

Query: 69  ATQRKLEDISHIVFLL----THLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNH 122
             Q KL++ +     L    T +SL +   VI  L   ++  I   ++L   IP L  +H
Sbjct: 44  --QVKLDEFNQFYQSLLLHPTGISLKSYVEVISKLFFDIVLPIIIVTFLSGAIPSLFSSH 101

Query: 123 -------VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                  +K  F  ++   G K+I+SI  + +F+K+ + II+      + +  +   ++ 
Sbjct: 102 FKLATEAIKIDFNHINPISGFKKIFSIRTIKDFLKTILFIIIFLITCYVFMILHMGEVVI 161

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
              A+   ++      V   + +  +    + +L+I   +  +   + M K E+K E K 
Sbjct: 162 LYRADLEGVIDKWCSLVVSFIFIFFILSIPILILNIIADFFLFIKDMMMEKHEVKQEHKN 221

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
             GNP IK+ ++ + +  +   M      ++ +I NPTH A+ + +       P++    
Sbjct: 222 MEGNPEIKSVRRQLHQELLDEPMKRVIRDSSAVIVNPTHVAVGIYFDPDNGIMPIVSLSC 281

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
            N  A  ++  A +   P+   P LAR L
Sbjct: 282 TNAKALAVKAYAKKVGTPVIRYPELARKL 310


>gi|330883669|gb|EGH17818.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 138

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARS 252
           R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ ++  
Sbjct: 3   RHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLSHE 62

Query: 253 RIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
            +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++
Sbjct: 63  ILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGED 110


>gi|332798509|ref|YP_004460008.1| type III secretion exporter [Tepidanaerobacter sp. Re1]
 gi|332696244|gb|AEE90701.1| type III secretion exporter [Tepidanaerobacter sp. Re1]
          Length = 101

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y   E++AP ++A G+ +IA+K+ ++A EHNI I+++P+L  +L  Q+ +   IP
Sbjct: 13  ATALKYNSAEDNAPKIIASGKGIIAEKILELAQEHNIAIYKDPALVEALV-QLEVGQEIP 71

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  IY
Sbjct: 72  LELYQAVAEILAFIY 86


>gi|154175297|ref|YP_001407951.1| FlhB domain-containing protein [Campylobacter curvus 525.92]
 gi|112802155|gb|EAT99499.1| FlhB domain protein [Campylobacter curvus 525.92]
          Length = 87

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G   IA K+  +A EH IPI E+P L   L K V I+  IP
Sbjct: 8   AVALGYNREKNSAPKVLATGSGEIANKIISLAREHEIPIKEDPDLIEILSK-VEIDQEIP 66

Query: 336 PVFYKAVAQL---IYKIYHKK 353
           P  YKAVA++   +YK+ +KK
Sbjct: 67  PNLYKAVAEIFSFLYKVTNKK 87


>gi|299536764|ref|ZP_07050072.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1]
 gi|298727776|gb|EFI68343.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1]
          Length = 100

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + D+P +VAKG+  IA+ +   A EHN+PI+E+P+L + L  Q+ +N +IP
Sbjct: 11  AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA++   IY
Sbjct: 70  EELYQAVAEVFAFIY 84


>gi|169827108|ref|YP_001697266.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41]
 gi|168991596|gb|ACA39136.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41]
          Length = 100

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + D+P +VAKG+  IA+ +   A EHN+PI+E+P+L + L  Q+ +N +IP
Sbjct: 11  AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA++   IY
Sbjct: 70  EELYQAVAEVFAFIY 84


>gi|304415257|ref|ZP_07395954.1| putative type III secretion system protein [Candidatus Regiella
           insecticola LSR1]
 gi|304282883|gb|EFL91349.1| putative type III secretion system protein [Candidatus Regiella
           insecticola LSR1]
          Length = 385

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 124/275 (45%), Gaps = 12/275 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++D+  +G +  S++      I+ACLI          Y ++    V L  
Sbjct: 4   NKTEKPTQKKLKDSAKKGQSFKSKDF-----IIACLI-----LCGAQYLISMGSFVELMG 53

Query: 69  ATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPS 126
           A +R +  D  + +   T   L     ++  ++L  +F      L+Q   V+    +K +
Sbjct: 54  AYRRVIANDFDYDIHRYTTAVLWIGLQILLPIILLCVFASALPTLLQTGFVIATKALKFN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++  +G K+I+S+    + +KS + +        +        +   +   P+ +  
Sbjct: 114 FGAINPAKGFKKIFSLRTAKDAVKSLLYLATFFISALLVWHNKKGLLFQQLHGTPYDMTV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ ++   L+ I  + +LD    +  +   LKM KQE K E+K+  GNP IK+++
Sbjct: 174 VWGELLQAIIFTCLVCIIIILILDALAEFFLYIKDLKMDKQEFKREMKEQDGNPEIKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           + +    +  ++      +  II NPTH A+ + Y
Sbjct: 234 RELHSELLSEQIKSDVKNSNFIIANPTHIAVGIYY 268


>gi|313673501|ref|YP_004051612.1| type iii secretion exporter [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940257|gb|ADR19449.1| type III secretion exporter [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 87

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           ALRY Q ++ AP +VAKG+ +IA+K+ + A EHN+ I E+P L  +L+K + I   IP  
Sbjct: 9   ALRYDQEKDSAPKVVAKGRGIIAEKILEKAKEHNVLIKEDPDLLEALYK-LDIYQEIPEN 67

Query: 338 FYKAVAQLIYKIYH 351
            Y+ VA+++ ++Y 
Sbjct: 68  LYRVVAEILSEVYR 81


>gi|258404776|ref|YP_003197518.1| hypothetical protein Dret_0648 [Desulfohalobium retbaense DSM 5692]
 gi|257797003|gb|ACV67940.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692]
          Length = 89

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y ++++DAP +VA GQ  +A+++   A E ++P+ E+P L   L  QVP+   IP
Sbjct: 9   AVALKYERSKDDAPRVVASGQGRLAERILATAEEADVPLREDPDLLEVL-AQVPVGDEIP 67

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  +Y
Sbjct: 68  EDLYQAVAEILAFVY 82


>gi|115377833|ref|ZP_01465021.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820311|ref|YP_003952669.1| type III secretion exporter family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365165|gb|EAU64212.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393383|gb|ADO70842.1| Type III secretion exporter family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 93

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y Q ++ AP +VAKG  L A+K+R+IA ++NIP+ +   LA +L++ V +   +P
Sbjct: 8   AIALKYDQNKDSAPRVVAKGMRLKAEKIREIAKQYNIPVMKNLPLASALYR-VDVGQEVP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y AVA+++  +Y
Sbjct: 67  EELYDAVAEVLNFVY 81


>gi|71906417|ref|YP_284004.1| flagellar biosynthetic protein [Dechloromonas aromatica RCB]
 gi|71846038|gb|AAZ45534.1| possible flagellar biosynthetic protein [Dechloromonas aromatica
           RCB]
          Length = 93

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 5/85 (5%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           ++PT  A+AL Y QT+  AP +VAKG+ LIA+++   A EH + + E P L  +L  QV 
Sbjct: 6   SDPTREAIALAYSQTDA-APRVVAKGKGLIAEQIIARAKEHGVYVHESPELV-ALLTQVD 63

Query: 330 INSAIPPVFYKAVAQL---IYKIYH 351
           ++  IPP  Y A+A+L   +Y+I H
Sbjct: 64  LDEHIPPQLYIAIAELLAWLYRIEH 88


>gi|307721269|ref|YP_003892409.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979362|gb|ADN09397.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 85

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N APV+ AKG+   A+K+ KIA EH +PI ++  L   L  +V +N  +P
Sbjct: 5   AVALTYDKEKNRAPVISAKGKGTTAQKIIKIAKEHGVPIKKDEDLI-ELLSKVELNKEVP 63

Query: 336 PVFYKAVAQLIYKIY 350
           P  YKA+A++   IY
Sbjct: 64  PQMYKAIAEVFSFIY 78


>gi|256024634|ref|ZP_05438499.1| surface presentation of antigens protein SpaS [Escherichia sp.
           4_1_40B]
 gi|300950611|ref|ZP_07164513.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 116-1]
 gi|300958192|ref|ZP_07170346.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 175-1]
 gi|300315144|gb|EFJ64928.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 175-1]
 gi|300450091|gb|EFK13711.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 116-1]
 gi|309703219|emb|CBJ02554.1| type III secretion system protein [Escherichia coli ETEC H10407]
 gi|323935780|gb|EGB32083.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1520]
          Length = 243

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 12/247 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK    
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +   +K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK+++  
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232

Query: 249 IARSRIR 255
             R RIR
Sbjct: 233 --RERIR 237


>gi|126654068|ref|ZP_01725894.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905]
 gi|126589448|gb|EAZ83595.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905]
          Length = 100

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + D+P +VAKG+  IA+ +   A EHN+PI+E+P+L   L  Q+ +N +IP
Sbjct: 11  AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVH-LLGQLDLNESIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA++   IY
Sbjct: 70  EELYQAVAEVFAFIY 84


>gi|124516284|gb|EAY57792.1| probable flagellar biosynthesis protein [Leptospirillum rubarum]
          Length = 100

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E+DAPV++A GQ+ IA+K+ +IA E+ IP+   P LA  L + VP    IP
Sbjct: 11  AIALGYHPEEDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAELLIR-VPPGHPIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA L+  +Y
Sbjct: 70  AELYQAVALLLAYLY 84


>gi|268678710|ref|YP_003303141.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616741|gb|ACZ11106.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 92

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 4/87 (4%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T+ T  A+AL+Y + +  AP +VA G+  +A  + K+A EH+I I ++  L   L  ++ 
Sbjct: 5   TSKTQKAVALKYDREKQGAPKVVASGKGEVANNIIKLAQEHDIFIKKDADLVE-LLSKIE 63

Query: 330 INSAIPPVFYKAVAQL---IYKIYHKK 353
           IN  IPP+ YKAVA++   IYKI + K
Sbjct: 64  INKEIPPMLYKAVAEVFSFIYKITNDK 90


>gi|229529200|ref|ZP_04418590.1| Type III secretion inner membrane protein [Vibrio cholerae
           12129(1)]
 gi|229332974|gb|EEN98460.1| Type III secretion inner membrane protein [Vibrio cholerae
           12129(1)]
          Length = 350

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 162/367 (44%), Gaps = 39/367 (10%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54
           M E+  P  K   P+ KK+ D   +G  P +       E  +F+ I+   +Y LF +S  
Sbjct: 1   MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIFTLYYLFEYSGE 58

Query: 55  IYSVT--SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI 112
             S    +D+ V LA+        +  + + +  L+L           L ++  I  +++
Sbjct: 59  WLSAVLYADIDVGLATG-------VDVLWWCIGGLAL-----------LKLVMAIFEWVM 100

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SLT 167
               V++   +     +++   G K I+ +  +    +SF K++ +  ++ +      + 
Sbjct: 101 INKAVISTEALGLKMDKINPVNGAKNIFGVEAI---SRSFRKVLELLFLLFLLKYVADVL 157

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
            +    L+ I+  P+ I Y+  ++V       L++   +  +D     + +  K +M+  
Sbjct: 158 GSQLYQLNEINNYPYFI-YYLMYSVGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFT 216

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+K+E+K++ G+P IK  +K   R  +   + +   R T  + NPTH  + + Y      
Sbjct: 217 EMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIER 275

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346
            PV++      +A + RK     +IPI E   LAR+++ ++      +P  F++ VA +I
Sbjct: 276 VPVVLKICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVII 335

Query: 347 YKIYHKK 353
             +  +K
Sbjct: 336 SNLKRQK 342


>gi|307944387|ref|ZP_07659728.1| putative secretion system apparatus protein SsaU [Roseibium sp.
           TrichSKD4]
 gi|307772733|gb|EFO31953.1| putative secretion system apparatus protein SsaU [Roseibium sp.
           TrichSKD4]
          Length = 259

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 126/272 (46%), Gaps = 23/272 (8%)

Query: 89  LSASRLVIPGLLLFMMFGI-GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
           +S   +V+P ++L + F +  S ++ +  V +   +KP F +++   G+K I+ +  L  
Sbjct: 1   MSDGYIVLPIMMLVIFFSVLASIMMTQGFVFSTERMKPDFNKLNPANGLKNIFGLQALKT 60

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPH-----SILYHAFFTVRKVLIMILLF 202
            +   +++   GTI+   +   YF    F+S         S+    +F V   L+++ + 
Sbjct: 61  ALMHVLRLSFSGTILIFLIY--YFVPTVFLSPYCELDCGISVNATVYFYVLLALLILSII 118

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262
            A   ++D      ++  + KM+  E K E K+  GNP IK R K I +  +   +    
Sbjct: 119 FA---MIDFVVQRSEFLRQNKMTDTEQKQEKKEQLGNPEIKGRIKEIQQEVVTKTV--GM 173

Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAK--GQNLIAKKMRKIAYEHNIPIFEEPSL 320
             A+ I+ +    A+A+RY+    + P +VAK  G+N +     ++A E   P+ E  + 
Sbjct: 174 RNASFIVADGLKQAVAIRYVPGGEEMPTIVAKARGRNAVL----RLASESGKPV-EHSAE 228

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             +L K++ +     P+  +A  + +    HK
Sbjct: 229 LLALVKKIGVGD---PIMDEAAVKHLVPFLHK 257


>gi|114566998|ref|YP_754152.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337933|gb|ABI68781.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 89

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   +++ PV+VAKGQ  IA+K++K+A E  +PI E+  LA  L   + +   IP
Sbjct: 9   AVALRYDMEKDEVPVVVAKGQGFIAEKIKKVARESGVPIKEDRELADYLMA-LDLYEEIP 67

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y  VA+++  IY
Sbjct: 68  PELYAVVAEILAFIY 82


>gi|238759386|ref|ZP_04620551.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236]
 gi|238702413|gb|EEP94965.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236]
          Length = 240

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 60/113 (53%)

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           LKM KQE+K E K + G+P IK+ ++ + +  +  ++      +T I+ NPTH A+A+ +
Sbjct: 74  LKMEKQEVKKEHKDNDGDPHIKSARRGLHQELLSEEVKANVRDSTFIMANPTHIAMAIYF 133

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
                  P ++ K + L AK +   A    +P+  +  LAR L++    +S I
Sbjct: 134 NTDIAPLPFIMMKTKGLQAKAVVAYAESQGVPVVRDIPLARQLWRHYRKDSFI 186


>gi|153215439|ref|ZP_01950023.1| VcsU2 [Vibrio cholerae 1587]
 gi|153827954|ref|ZP_01980621.1| VcsU2 [Vibrio cholerae 623-39]
 gi|124114733|gb|EAY33553.1| VcsU2 [Vibrio cholerae 1587]
 gi|148876535|gb|EDL74670.1| VcsU2 [Vibrio cholerae 623-39]
          Length = 346

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 3/181 (1%)

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+ I+  P+ I Y+  +++  V +  L++   +  +D     + ++ K +M+  E+K+E+
Sbjct: 163 LNEINNYPYFI-YYLLYSIGAVSLFYLVYGVCIGSVDYLAEKYHFHQKNRMTFTEMKNEL 221

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G+P IK  ++      +    ++   + T  + NPTH  + + Y       PV++ 
Sbjct: 222 KETEGSPEIK-YERRRRMREVMKTPVKKGRKPTFALANPTHILVPIYYDPKVEKIPVVLK 280

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYHK 352
                +A   RK   E  IPI E   LARSL++++      +P  FY+ VA +I  +  +
Sbjct: 281 ISTESLALAERKRLEEQGIPIIENIPLARSLYRKMKSGEDFLPKEFYRDVAVIISTLNRQ 340

Query: 353 K 353
           K
Sbjct: 341 K 341


>gi|288553079|ref|YP_003425014.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4]
 gi|288544239|gb|ADC48122.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4]
          Length = 91

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   + D+P ++AKG+ +IA+++ + A  H+IPI E+ SL   L  Q+ IN  IP
Sbjct: 9   AVALRYDAAKQDSPEVIAKGKGIIAEEIIEKAKNHHIPIQEDASLVE-LLSQLNINQTIP 67

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ VA++   IY
Sbjct: 68  PELYEVVAEVFAFIY 82


>gi|301643802|ref|ZP_07243839.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 146-1]
 gi|301077835|gb|EFK92641.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 146-1]
          Length = 243

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 12/247 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK    
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLVTEAVKFKLD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +   +K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSGW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK+++  
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR-- 232

Query: 249 IARSRIR 255
             R RIR
Sbjct: 233 --RERIR 237


>gi|229515162|ref|ZP_04404622.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21]
 gi|254285284|ref|ZP_04960249.1| VcsU2 [Vibrio cholerae AM-19226]
 gi|71480619|gb|AAZ32241.1| VcsU2 [Vibrio cholerae non-O1/non-O139]
 gi|150424556|gb|EDN16492.1| VcsU2 [Vibrio cholerae AM-19226]
 gi|229347867|gb|EEO12826.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21]
          Length = 350

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 160/368 (43%), Gaps = 41/368 (11%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54
           M E+  P  K   P+ KK+ D   +G  P +       E  +F+ I+   +Y LF +S  
Sbjct: 1   MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIFTLYYLFEYSGE 58

Query: 55  IYSVT--SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYL 111
             S    +D+ V LA+                    +      I GL LL ++  I  ++
Sbjct: 59  WLSAVLYADIDVGLATG-------------------VDVLWWCIGGLALLKLVMAIFEWV 99

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SL 166
           +    V++   +     +++   G K I+ +  +    +SF K++ +  ++ +      +
Sbjct: 100 MINKAVISTEALGLKMDKINPVNGAKNIFGVEAI---SRSFRKVLELLFLLFLLKYVADV 156

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             +    L+ I+  P+ I Y+  +++       L++   +  +D     + +  K +M+ 
Sbjct: 157 LGSQLYQLNEINNYPYFI-YYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTF 215

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
            E+K+E+K++ G+P IK  +K   R  +   + +   R T  + NPTH  + + Y     
Sbjct: 216 TEMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIE 274

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQL 345
             PV++      +A + RK     +IPI E   LAR+++ ++      +P  F++ VA +
Sbjct: 275 RVPVVLKICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVI 334

Query: 346 IYKIYHKK 353
           I  +  +K
Sbjct: 335 ISNLKRQK 342


>gi|218672785|ref|ZP_03522454.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56]
          Length = 124

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 4  NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF 50
          +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF
Sbjct: 3  DDDKDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFF 49


>gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacterium sp. Marseille]
 gi|151283317|gb|ABR91727.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 95

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+AL Y Q+ + AP +VAKG+  IA+++ + A EH + I E   L  +L  QV 
Sbjct: 4   TTPPQQAVALAY-QSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELV-ALLLQVE 61

Query: 330 INSAIPPVFYKAVAQLIYKIY 350
           ++  IPP  Y+AVA+L+  +Y
Sbjct: 62  LDEHIPPALYRAVAELLAWLY 82


>gi|167463786|ref|ZP_02328875.1| FlhB domain protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382570|ref|ZP_08056450.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153486|gb|EFX45891.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 110

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A+AL+Y   +  APV++AKG   IA+ +   A EH IP+ E+PSL   L K + +
Sbjct: 15  NSLKKAVALKYNPGQGQAPVVIAKGTGKIAEDILSKAEEHGIPVQEDPSLVEVLSK-LDL 73

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
           +  IPP  Y+ VA+++  IY
Sbjct: 74  DQEIPPELYQLVAEILTFIY 93


>gi|117926314|ref|YP_866931.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus
           sp. MC-1]
 gi|117610070|gb|ABK45525.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus
           sp. MC-1]
          Length = 100

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   ++ +P + A G+  +A+ + K A E ++P+ E+P L   L +++P+ S +P
Sbjct: 16  AVALRYRLGKDTSPRVTASGRGRLAETILKRAKEGDVPLLEDPDLVH-LLEKIPVGSEVP 74

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  IY
Sbjct: 75  PQLYQAVAEVLAYIY 89


>gi|226313194|ref|YP_002773088.1| hypothetical protein BBR47_36070 [Brevibacillus brevis NBRC 100599]
 gi|226096142|dbj|BAH44584.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 96

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y     +AP +VAKG+  +A  + K A EH+IP+ E+PSL   L K + ++  IP
Sbjct: 14  AVALKYQAGTMEAPKVVAKGKGYVADNILKTAKEHDIPVQEDPSLVEVLGK-LDLDQQIP 72

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ VA+++  +Y
Sbjct: 73  PELYQVVAEILAFVY 87


>gi|121533785|ref|ZP_01665612.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307776|gb|EAX48691.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus
           carboxydivorans Nor1]
          Length = 96

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY Q    AP +VAKG   +A+++   A +H +P++++ +LA SL   V ++  IP
Sbjct: 12  AIALRYDQQTQQAPKVVAKGSGYVAEQILATAAQHAVPVYKDTALA-SLLMAVELDKEIP 70

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ VA+++  IY
Sbjct: 71  PELYQVVAEVLAYIY 85


>gi|206603123|gb|EDZ39603.1| Probable flagellar biosynthesis protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 100

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A+AL Y   ++DAPV++A GQ+ IA+K+ +IA E+ IP+   P LA  L + VP 
Sbjct: 6   NKGSIAIALGYHPEKDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAEFLIR-VPP 64

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y+AVA L+  +Y
Sbjct: 65  GHPIPAELYQAVALLLAYLY 84


>gi|323166469|gb|EFZ52233.1| surface presentation of antigens protein spaS [Shigella sonnei 53G]
          Length = 250

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 16/224 (7%)

Query: 111 LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           L+Q   VL    +K  F  ++  +G+K+I+SI  +  F KS      +  +I ++LT  +
Sbjct: 5   LVQTKFVLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKS------ILLLIILALTTYF 58

Query: 171 FTMLD--------FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
           F + D        F S +   +++   F  + +++  L F   + +LD    +  +   +
Sbjct: 59  FWINDRKIIFSQVFSSVDGLYLIWGGLF--KDIILFFLAFSIFVIILDFVIEFILYMKDM 116

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
            M KQEIK E  +  G+   K+R++ +    +  +       + +++ NPTH A+ + + 
Sbjct: 117 MMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFN 176

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
                AP +     N  A  +RK A E  IP   +  LAR L+K
Sbjct: 177 PEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYK 220


>gi|167630262|ref|YP_001680761.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167593002|gb|ABZ84750.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 99

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY  + + AP ++A G+  +A+K+ +IA E  IP++E+P+L + L  ++ +   IP
Sbjct: 15  AVALRYDPSADAAPKVIATGKGHLARKILEIAREKEIPVYEDPTLVQ-LLSKLDLGVEIP 73

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ VA+++  +Y
Sbjct: 74  PELYRMVAEVLAFVY 88


>gi|327441069|dbj|BAK17434.1| uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Solibacillus silvestris StLB046]
          Length = 97

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++  P +VAKG+  IA+ + + A  H +P++E+P+L   L  Q+ +N++IP
Sbjct: 11  AIALSYDPQKSSGPTIVAKGKGKIAENILEKAAMHEVPVYEDPNLVE-LLGQLDLNTSIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+AVA++   IYH
Sbjct: 70  EELYQAVAEVFAFIYH 85


>gi|254224928|ref|ZP_04918543.1| Type III secretory pathway, component EscU [Vibrio cholerae V51]
 gi|125622616|gb|EAZ50935.1| Type III secretory pathway, component EscU [Vibrio cholerae V51]
          Length = 350

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 161/368 (43%), Gaps = 41/368 (11%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54
           M E+  P  K   P+ KK+ D   +G  P +       E  +F+ I+   +Y LF +S  
Sbjct: 1   MEESTEP--KKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIFTLYYLFEYSGE 58

Query: 55  IYSVT--SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYL 111
             S    +D++V LA+                    +      I GL LL ++  I  ++
Sbjct: 59  WLSAVLYADIYVGLATG-------------------VDVLWWCIGGLALLKLVMVIFEWV 99

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SL 166
           +    V++   +     +++   G K I+ +  +    +SF K++ +  ++ +      +
Sbjct: 100 MINKAVISTEALGLKMDKINPVNGAKNIFGVEAI---SRSFRKVLELLFLLFLLKYVADV 156

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             +    L+ I+  P+ I Y+  +++       L++   +  +D     + +  K +M+ 
Sbjct: 157 LGSQLYQLNEINNYPYFI-YYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTF 215

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
            E+K+E+K++ G+P IK  +K   R  +   + +   R T  + NPTH  + + Y     
Sbjct: 216 TEMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIE 274

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQL 345
             PV++      +A + RK     +IPI E   LAR+++ ++      +P  F++ +A +
Sbjct: 275 RVPVVLKICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDIAVI 334

Query: 346 IYKIYHKK 353
           I  +  +K
Sbjct: 335 ISNLKRQK 342


>gi|213021563|ref|ZP_03336010.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 243

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 23/251 (9%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILIE 54

Query: 69  ATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGI-----GSYLIQRIPVLNLNH 122
           +    L+ ++    + LT LS  A    +   LLF+  G+     GS  +Q   V+    
Sbjct: 55  SITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKA 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P+
Sbjct: 114 IGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALPY 169

Query: 183 SILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E K   G
Sbjct: 170 CGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEG 229

Query: 239 NPIIKNRQKSI 249
           +P +K R++ +
Sbjct: 230 DPQMKTRRREM 240


>gi|257092546|ref|YP_003166187.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045070|gb|ACV34258.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 108

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           TNP   A+AL Y QT+  AP +VAKG+ L+A+++   A+EH + + E   L  SL  QV 
Sbjct: 6   TNPLKNAVALAYSQTDA-APRVVAKGRGLVAEQIIARAHEHGVYVHESAELV-SLLLQVD 63

Query: 330 INSAIPPVFYKAVAQLIYKIY 350
           ++  IPP  Y AVA+L+  +Y
Sbjct: 64  LDQHIPPQLYLAVAELLAWLY 84


>gi|296132572|ref|YP_003639819.1| type III secretion exporter [Thermincola sp. JR]
 gi|296031150|gb|ADG81918.1| type III secretion exporter [Thermincola potens JR]
          Length = 100

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     DAP +VA GQ L+A+ + ++A E+NIPI E+P L  +L + + +   IP
Sbjct: 19  AVALEYKPGLQDAPQVVATGQGLVAENIVRLAKEYNIPIEEDPVLVDAL-RVLQLGEEIP 77

Query: 336 PVFYKAVAQLI 346
           P  Y+ VA+++
Sbjct: 78  PELYRVVAEIL 88


>gi|302390418|ref|YP_003826239.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302201046|gb|ADL08616.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 96

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL+Y   ++ AP +VA G+   A+++ + A EH IP+  +P LA +L   V + 
Sbjct: 8   PQRKAVALKYDPEKDGAPRVVASGRGETAERIIQTAKEHGIPLHTDPELAGALL-SVEVG 66

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IPP  Y+AVA+++  IY
Sbjct: 67  LEIPPELYRAVAEILAFIY 85


>gi|329915167|ref|ZP_08276222.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544973|gb|EGF30311.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 97

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           +P   A+AL Y Q+ + AP +VAKG+ LIA ++ + A EH + + E   L  +L  QV +
Sbjct: 6   SPLKNAVALAY-QSGDAAPKIVAKGRGLIATQIIERAKEHGVFVHESKELV-ALLMQVDL 63

Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
           +  IPP  Y+A+A+L+  +YH
Sbjct: 64  DGQIPPALYRAIAELLAWLYH 84


>gi|242309108|ref|ZP_04808263.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT
           98-5489]
 gi|239524149|gb|EEQ64015.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT
           98-5489]
          Length = 92

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+  +L  SL   + I+
Sbjct: 5   PPQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLI-HLEID 63

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IPP  YKAV ++   +Y
Sbjct: 64  EEIPPELYKAVVEVFIWLY 82


>gi|224436936|ref|ZP_03657917.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
 gi|313143408|ref|ZP_07805601.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
 gi|313128439|gb|EFR46056.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
          Length = 91

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++AP +VAKGQN IA K+   A E ++P+F  P L +SL  Q+P++S IP
Sbjct: 6   AVALAYNAEFDNAPRVVAKGQNDIALKIIAKAKEFDVPLFSNPLLVQSLL-QIPLDSHIP 64

Query: 336 PVFYKAVAQL 345
           P  Y AV ++
Sbjct: 65  PEMYNAVVEV 74


>gi|134095072|ref|YP_001100147.1| putative part of export apparatus for flagellar proteins (partial)
           [Herminiimonas arsenicoxydans]
          Length = 97

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y Q+ + AP +VAKG+ LIA+++ + A EH + I E   L  +L  QV ++
Sbjct: 9   PPPSAVALAY-QSGDSAPRIVAKGRGLIAEQIIERAKEHGVAIHESKELV-ALLLQVELD 66

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IPP  Y+AVA+L+  +Y
Sbjct: 67  DNIPPALYRAVAELLAWLY 85


>gi|221271473|dbj|BAH15025.1| putative type III secretion system apparatus protein VscU2 [Vibrio
           parahaemolyticus]
 gi|328469635|gb|EGF40571.1| putative type III secretion system EscU protein [Vibrio
           parahaemolyticus 10329]
          Length = 346

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 3/181 (1%)

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+ I+  P+ I Y+  +++  V +  L++   +  +D     + ++ K +M+  E+K+E+
Sbjct: 163 LNEINNYPYFI-YYLLYSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNEL 221

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G+P IK  ++   R  +   + +   + T  + NPTH  + + Y       PV++ 
Sbjct: 222 KETEGSPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLK 280

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYHK 352
                +A   RK   E  IPI E   LARSL++ +      +P  FY+ VA +I  +  +
Sbjct: 281 ISTESLALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQ 340

Query: 353 K 353
           K
Sbjct: 341 K 341


>gi|167950811|ref|ZP_02537885.1| FlhB domain protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 94

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++AP L AKG+  +A+++  IA EHNIP+ ++  L+ +L  Q+P+   IP
Sbjct: 12  AIALNY--DGSNAPRLTAKGRGAVAEQILSIAKEHNIPLHQDTELS-ALLAQIPLGDEIP 68

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA++I   Y
Sbjct: 69  EALYRAVAEVIAFAY 83


>gi|224419116|ref|ZP_03657122.1| hypothetical protein HcanM9_07572 [Helicobacter canadensis MIT
           98-5491]
 gi|253828052|ref|ZP_04870937.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142623|ref|ZP_07804816.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT
           98-5491]
 gi|253511458|gb|EES90117.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131654|gb|EFR49271.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT
           98-5491]
          Length = 93

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           +  A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+  +L  SL   + I+ 
Sbjct: 6   SQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLI-HLEIDE 64

Query: 333 AIPPVFYKAVAQLIYKIY 350
            IPP  YKAV ++   +Y
Sbjct: 65  EIPPDLYKAVVEVFIWLY 82


>gi|325294769|ref|YP_004281283.1| type III secretion exporter [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065217|gb|ADY73224.1| type III secretion exporter [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 88

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 4/81 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L+Y + +++AP +VAKG+ ++A+++ ++A +HNIPI E+  L   L K + I   IP
Sbjct: 5   AVVLKYNKAKDNAPKVVAKGEGILAERILELAQKHNIPIVEDKELVSFLLK-LNIGEEIP 63

Query: 336 PVFYKAVAQLI---YKIYHKK 353
           P  YK +A+++   Y + H++
Sbjct: 64  PTLYKIIAKILSYAYNVIHQE 84


>gi|220915853|ref|YP_002491157.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953707|gb|ACL64091.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 4/233 (1%)

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L+   + P  +R+    G++R+ S   L        K  ++  +    L     ++    
Sbjct: 109 LSFAALAPRLERIDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALP 168

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
              P + L+ A   +  +   +    A L  LD+     +    L M++ E++ E ++  
Sbjct: 169 RLGP-AALWRAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDE 227

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P+ +  ++   R+ +    +      T+++ NPTH A+AL++ +    AP +VAKG  
Sbjct: 228 GDPLHRAARQRRHRALLEAPAVARA---TVVVVNPTHLAVALQHDRRGGGAPRVVAKGAG 284

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             A ++R  A    +P+  + +LAR+L +   +   IP   Y+A A ++  +Y
Sbjct: 285 EAAARIRSAARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLY 337


>gi|27380472|ref|NP_772001.1| hypothetical protein bsl5361 [Bradyrhizobium japonicum USDA 110]
 gi|27353636|dbj|BAC50626.1| bsl5361 [Bradyrhizobium japonicum USDA 110]
          Length = 87

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +++P+  A+AL Y +  + APV+VAKG+  I +K+ +IA  ++IPI E   LA +L K V
Sbjct: 1   MSDPSKLAIALHY-EKGSGAPVVVAKGKGTIGEKIVEIAKANDIPIEENEILAGALSK-V 58

Query: 329 PINSAIPPVFYKAVAQLI 346
            +   IPP  YKAVA+++
Sbjct: 59  ELGEEIPPDLYKAVAEVL 76


>gi|116328316|ref|YP_798036.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331042|ref|YP_800760.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121060|gb|ABJ79103.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124731|gb|ABJ76002.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 90

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL++I  +++APV+ A    L+   +RKIA ++++P+ E+  LA SLF ++P+ S IP
Sbjct: 3   SVALKFIPQKDNAPVITASASGLLGDVIRKIANKNSVPVVEDSVLAESLF-ELPVGSEIP 61

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+AV  +   I  
Sbjct: 62  ENLYRAVGAIFSMILE 77


>gi|258511352|ref|YP_003184786.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478078|gb|ACV58397.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 85

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   ++ AP +VAKG   +AK + + A  H +P+ E+  L  +LF  + ++  IP
Sbjct: 7   AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  IY
Sbjct: 66  PELYQAVAEILAYIY 80


>gi|188586969|ref|YP_001918514.1| flagellar biosynthesis protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351656|gb|ACB85926.1| flagellar biosynthesis protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 96

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 272 PTHY--ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           P H+  A AL+Y Q +N AP L+A GQ L+A ++ + A E  I I+++P LA +L  Q+ 
Sbjct: 5   PKHFKRAAALKYDQDKNQAPQLIAAGQGLVADEIIRRAEEEGIYIYQDPELANTL-SQLS 63

Query: 330 INSAIPPVFYKAVAQLI 346
           +   IP   Y+ VA+++
Sbjct: 64  LYQEIPEELYQGVAEVL 80


>gi|254517031|ref|ZP_05129089.1| FlhB domain protein [gamma proteobacterium NOR5-3]
 gi|219674536|gb|EED30904.1| FlhB domain protein [gamma proteobacterium NOR5-3]
          Length = 96

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH A AL Y  +   AP+LVAKG+N IA ++ ++A E+ +PI ++  L   L  Q+P+  
Sbjct: 13  THSA-ALSY--SGEGAPLLVAKGENAIADRIVELAAENGVPIVQDAQLTE-LLCQIPLGD 68

Query: 333 AIPPVFYKAVAQLIYKIY 350
            +PP  Y AVA+++  +Y
Sbjct: 69  EVPPALYVAVAEVLAYVY 86


>gi|218288274|ref|ZP_03492573.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241633|gb|EED08806.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 85

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   ++ AP +VAKG   +AK + + A  H +P+ E+  L  +LF  + ++  IP
Sbjct: 7   AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  IY
Sbjct: 66  PELYQAVAEILAYIY 80


>gi|134298145|ref|YP_001111641.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1]
 gi|134050845|gb|ABO48816.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1]
          Length = 90

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   ++ AP +VA G+  +A  + ++A EHNIP++ + +LA +L  ++ + + IP
Sbjct: 9   AAALRYHHGKDHAPTVVAVGKGDLATAIERLATEHNIPLYRDETLAHTL-TELGLGTEIP 67

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+AVA+++  +
Sbjct: 68  PELYEAVAKILIHV 81


>gi|88704263|ref|ZP_01101977.1| FlhB domain protein [Congregibacter litoralis KT71]
 gi|88701314|gb|EAQ98419.1| FlhB domain protein [Congregibacter litoralis KT71]
          Length = 100

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M +   R+      P   + AL Y  +   AP+LVAKG+N IA ++ ++A ++++PI ++
Sbjct: 1   MSDNDKRSQSSAKGPATQSAALSY--SGEGAPLLVAKGENAIADRIVELASQNDVPIVQD 58

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             L   L  Q+P+   +PP  Y AVA+++  +Y
Sbjct: 59  GQLTE-LLCQIPLGEEVPPELYLAVAEVLAYVY 90


>gi|297617102|ref|YP_003702261.1| type III secretion exporter [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144939|gb|ADI01696.1| type III secretion exporter [Syntrophothermus lipocalidus DSM
           12680]
          Length = 92

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY    ++APV+ AKG+ L+A+K+ ++A E  +PI E+P L   L   + I   IP
Sbjct: 11  AVALRYDPEIHEAPVVTAKGRGLLAEKIIELARESGVPIKEDPQLVEYL-AMLDIYQEIP 69

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ VA+++  +Y
Sbjct: 70  PELYQVVAEILAFVY 84


>gi|295399795|ref|ZP_06809776.1| type III secretion exporter [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111693|ref|YP_003990009.1| type III secretion exporter [Geobacillus sp. Y4.1MC1]
 gi|294978198|gb|EFG53795.1| type III secretion exporter [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216794|gb|ADP75398.1| type III secretion exporter [Geobacillus sp. Y4.1MC1]
          Length = 92

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + N    A+AL Y    ++APV+VAKG+  +A+ +   A +H IPI E+PSL + L  ++
Sbjct: 1   MKNEKKQAVALSYDANIHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSEL 59

Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
            IN  IP   Y+ VA++   IY
Sbjct: 60  EINEVIPEDLYRLVAEVFAFIY 81


>gi|239826600|ref|YP_002949224.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
 gi|239806893|gb|ACS23958.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
          Length = 90

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + N    A+AL Y    ++APV+VAKG+  +A+ +   A +H IPI E+PSL + L  ++
Sbjct: 1   MKNKEKQAVALSYDSNVHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSEL 59

Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
            IN  IP   Y  VA+L   IY
Sbjct: 60  EINETIPEDLYYLVAELFAFIY 81


>gi|297570293|ref|YP_003691637.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2]
 gi|296926208|gb|ADH87018.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2]
          Length = 104

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+ALRY   +  AP +VAKG   +A+K+  IA EH +PI E+  L   +  ++ 
Sbjct: 18  TPPRKKAVALRYDAEQQSAPQMVAKGSGTVAEKLIAIAREHGVPIHEDADLTE-ILSRLD 76

Query: 330 INSAIPPVFYKAVAQLIYKIY 350
           +   IPP  Y  VA+++  IY
Sbjct: 77  LYQEIPPETYLLVAEILAFIY 97


>gi|213855713|ref|ZP_03383953.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 93

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG  LIA ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  
Sbjct: 1   AKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 60

Query: 353 K 353
           K
Sbjct: 61  K 61


>gi|253573505|ref|ZP_04850848.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847033|gb|EES75038.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 101

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   + +APV+VAKG+ LIA ++   A EH IPI E+ +L   L K + ++  IP
Sbjct: 15  AVALKYDPGQGEAPVVVAKGKGLIADRILDAALEHGIPIQEDAALVEVLSK-LDLDQQIP 73

Query: 336 PVFYKAVAQLIYKIY 350
              Y  VA+++  IY
Sbjct: 74  AELYDLVAEILTFIY 88


>gi|223039449|ref|ZP_03609737.1| FlhB domain protein [Campylobacter rectus RM3267]
 gi|222879245|gb|EEF14338.1| FlhB domain protein [Campylobacter rectus RM3267]
          Length = 89

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y + +++AP ++A G   +AK +  +A  H+IPI E+  L   L K V +N 
Sbjct: 7   TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLVEILSK-VDLNE 65

Query: 333 AIPPVFYKAVAQL---IYKIYHKK 353
            +PP  YKAVA++   +Y++ +KK
Sbjct: 66  EVPPNLYKAVAEIFNFLYRMTNKK 89


>gi|319789483|ref|YP_004151116.1| type III secretion exporter [Thermovibrio ammonificans HB-1]
 gi|317113985|gb|ADU96475.1| type III secretion exporter [Thermovibrio ammonificans HB-1]
          Length = 92

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y + +  AP +VAKG+ ++A+K+ +IA    +P+ +   L   L  QV + + IP
Sbjct: 6   AAALKYERGKMRAPRVVAKGEGVVAEKIVEIARRSGVPVLQNRGLVEFLL-QVDLGAEIP 64

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+L+  +Y
Sbjct: 65  PELYRAVAELLAYVY 79


>gi|15615036|ref|NP_243339.1| flagellar biosynthesis [Bacillus halodurans C-125]
 gi|10175093|dbj|BAB06192.1| flagellar biosynthesis [Bacillus halodurans C-125]
          Length = 92

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+RY + +  AP ++ KG+ L+A ++ K A E  +PI ++PSL   L  Q+ IN  IP
Sbjct: 10  AVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVE-LLGQLEINETIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+L   IY 
Sbjct: 69  EELYEVVAELFAFIYQ 84


>gi|149376614|ref|ZP_01894374.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter algicola DG893]
 gi|149359132|gb|EDM47596.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter algicola DG893]
          Length = 100

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y      APV+ A G + +A+++ +IA EHN+P++E P LA S+  ++ +N  IP
Sbjct: 13  AVALKY--DGERAPVIAASGTHELAEEIIRIAREHNVPLYENPELA-SILARLELNDEIP 69

Query: 336 PVFYKAVAQLI 346
              Y+ VA+++
Sbjct: 70  ETLYRVVAEIL 80


>gi|319649580|ref|ZP_08003736.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2]
 gi|317398742|gb|EFV79424.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2]
          Length = 98

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP + AKG+ L+A+ +   A EH+IP+ E+P+L   L  ++ IN  IP
Sbjct: 12  AVALTYDPVNQGAPRISAKGKGLVAENILVKAKEHDIPVQEDPALVE-LLGKLNINEGIP 70

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA++   IY
Sbjct: 71  EELYQAVAEVFVFIY 85


>gi|317129223|ref|YP_004095505.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
 gi|315474171|gb|ADU30774.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
          Length = 100

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y ++E++APV+ AKG+  +A ++ K A E+NIPI E+ SL   +  Q+ +N  IP
Sbjct: 16  AVALGYNRSEDEAPVVKAKGKGYVADEIIKRARENNIPIQEDSSLVE-ILSQLEMNERIP 74

Query: 336 PVFYKAVAQLIYKIY 350
              Y  VA++   +Y
Sbjct: 75  TALYGVVAEVFSFVY 89


>gi|258515578|ref|YP_003191800.1| hypothetical protein Dtox_2366 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779283|gb|ACV63177.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 104

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A ALR+   ++ APV+VA G+  IA+ ++K+A E +IPI ++P LA++L   +  
Sbjct: 18  NTVETASALRFDPNKDQAPVVVATGKGDIARSIKKMAGELHIPIVKDPVLAQTL-HTLGT 76

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
           N  IP   Y+AVA+++  +Y
Sbjct: 77  NIEIPEHLYEAVAKVLAYVY 96


>gi|260899851|ref|ZP_05908246.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037]
 gi|308107387|gb|EFO44927.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037]
          Length = 346

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 3/181 (1%)

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L+ I+  P+ I Y+   ++  V +  L++   +  +D     + ++ K +M+  E+K+E+
Sbjct: 163 LNEINNYPYFI-YYLLNSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNEL 221

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G+P IK  ++   R  +   + +   + T  + NPTH  + + Y       PV++ 
Sbjct: 222 KETEGSPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLK 280

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLIYKIYHK 352
                +A   RK   E  IPI E   LARSL++ +      +P  FY+ VA +I  +  +
Sbjct: 281 ISTESLALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQ 340

Query: 353 K 353
           K
Sbjct: 341 K 341


>gi|255322604|ref|ZP_05363749.1| FlhB domain protein [Campylobacter showae RM3277]
 gi|255300512|gb|EET79784.1| FlhB domain protein [Campylobacter showae RM3277]
          Length = 89

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y + +++AP ++A G   +AK +  +A  H+IPI E+  L   L K V +N 
Sbjct: 7   TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLIEVLSK-VDLNE 65

Query: 333 AIPPVFYKAVAQL---IYKIYHKK 353
            +PP  YKAVA++   +Y++ +KK
Sbjct: 66  EVPPNLYKAVAEIFNFLYQMTNKK 89


>gi|149183637|ref|ZP_01862054.1| flagellar biosynthesis [Bacillus sp. SG-1]
 gi|148848654|gb|EDL62887.1| flagellar biosynthesis [Bacillus sp. SG-1]
          Length = 94

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A+AL+Y   +  AP +VAKG+ LIA+ + + A EH +P+ E+ +L   L   + I
Sbjct: 7   NKRKQAIALQYESEKQQAPKVVAKGKGLIAENILEKAREHGVPVQEDRNLVE-LLGNLDI 65

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
           N +IP   Y+AVA++   +Y
Sbjct: 66  NESIPEELYQAVAEVFAFLY 85


>gi|197118783|ref|YP_002139210.1| FlhB cytoplasmic domain-containing protein [Geobacter bemidjiensis
           Bem]
 gi|197088143|gb|ACH39414.1| uncharacterized FlhB cytoplasmic domain protein-like protein
           [Geobacter bemidjiensis Bem]
          Length = 100

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   E+ AP +VAKG  + A+ +  +A EH + + + P L  SL  QV ++S IP
Sbjct: 11  AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+L+  +Y
Sbjct: 69  PELYQAVAELLAWLY 83


>gi|195953347|ref|YP_002121637.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932959|gb|ACG57659.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 87

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y + +++AP LVAKG+  IA+K+ + A EH +P+ ++  L  + +  + I   IP
Sbjct: 8   AIALKYERGKDNAPRLVAKGKGYIAQKIIEFAKEHQVPVIQDEKLLSAAY-NLDIYEEIP 66

Query: 336 PVFYKAVAQLI 346
           P  YKAVA+++
Sbjct: 67  PELYKAVAKVL 77


>gi|297531383|ref|YP_003672658.1| type III secretion exporter [Geobacillus sp. C56-T3]
 gi|297254635|gb|ADI28081.1| type III secretion exporter [Geobacillus sp. C56-T3]
          Length = 98

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +T PT  A  +RY ++   +P +VA+G   +A+K+ ++A +H+IPI E+P L ++L  Q+
Sbjct: 14  MTGPT--AAVIRYDESSGQSPTVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70

Query: 329 PINSAIPPVFYKAVAQLI 346
            +   IPP  Y  +A+++
Sbjct: 71  DLGDRIPPQLYAVIAEIL 88


>gi|82702472|ref|YP_412038.1| flagellar biosynthetic protein-like protein [Nitrosospira
           multiformis ATCC 25196]
 gi|82410537|gb|ABB74646.1| flagellar biosynthetic protein-like protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 101

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N +  A+AL Y +T + AP +VAKG+ L+A+ + + A  H + + E P L  SL  QV +
Sbjct: 5   NRSEAAVALAY-RTGDHAPQVVAKGRGLVAENIIREARRHGVFVHESPELV-SLLIQVDL 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
           +  IPP  Y+AVA+L+  +Y
Sbjct: 63  DQHIPPQLYRAVAELLVWLY 82


>gi|229541105|ref|ZP_04430165.1| conserved hypothetical protein [Bacillus coagulans 36D1]
 gi|229325525|gb|EEN91200.1| conserved hypothetical protein [Bacillus coagulans 36D1]
          Length = 96

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + APV+ AKG+  +A+++ + A + N+PI ++P LA +L  ++ IN AIP
Sbjct: 11  AVALQYSPDAHSAPVVKAKGKGDVARRIIEEAKKANVPIQQDPDLA-ALLGRLDINEAIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y AVA++   IY
Sbjct: 70  EELYAAVAEVFAMIY 84


>gi|261408003|ref|YP_003244244.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
 gi|261284466|gb|ACX66437.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
          Length = 104

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++APV+VAKGQ  +A+ +   A EH +P+ E+ +L   L K + ++  IP
Sbjct: 17  AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVEILSK-LDLDQQIP 75

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA+++  +Y
Sbjct: 76  EELYQLVAEVLTYVY 90


>gi|253700436|ref|YP_003021625.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Geobacter sp. M21]
 gi|251775286|gb|ACT17867.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Geobacter sp. M21]
          Length = 92

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   E+ AP +VAKG  + A+ +  +A EH + + + P L  SL  QV ++S IP
Sbjct: 11  AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+L+  +Y
Sbjct: 69  PELYQAVAELLAWLY 83


>gi|310658875|ref|YP_003936596.1| hypothetical protein CLOST_1571 [Clostridium sticklandii DSM 519]
 gi|308825653|emb|CBH21691.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 92

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E  AP +V KGQ  +AK++ + A E++IP++++  LA  L   + I+S IP
Sbjct: 11  AVALRYDMNEFIAPKIVGKGQGEVAKRIIEKAKENDIPVYQDEKLAGQL-SAMEIDSFIP 69

Query: 336 PVFYKAVAQLI 346
              Y+AVAQ++
Sbjct: 70  EELYEAVAQIL 80


>gi|119503687|ref|ZP_01625770.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma
           proteobacterium HTCC2080]
 gi|119460749|gb|EAW41841.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma
           proteobacterium HTCC2080]
          Length = 97

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 5/76 (6%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NP+  ++ALRY  ++  AP++VA G   IA  ++  A E  +P+ E+P LA+ L  QVP+
Sbjct: 13  NPS--SVALRYDGSQ--APIVVATGSGEIADAIKAKAEESGVPVVEDPRLAQ-LLSQVPL 67

Query: 331 NSAIPPVFYKAVAQLI 346
              IP   Y+AVA+++
Sbjct: 68  GEEIPAELYRAVAEVL 83


>gi|329929329|ref|ZP_08283082.1| putative FlhB domain protein [Paenibacillus sp. HGF5]
 gi|328936698|gb|EGG33141.1| putative FlhB domain protein [Paenibacillus sp. HGF5]
          Length = 104

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++APV+VAKGQ  +A+ +   A EH +P+ E+ +L   L K + ++  IP
Sbjct: 17  AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVEILSK-LDLDQQIP 75

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA+++  +Y
Sbjct: 76  EELYQLVAEVLTYVY 90


>gi|306821511|ref|ZP_07455113.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550469|gb|EFM38458.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 87

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ AP ++AKG N +AK M + A E +IPI+ +  +   L + + IN  IP
Sbjct: 9   AIALKYDSEEDIAPKVIAKGDNYVAKNMVEKAEELDIPIYRDEKIVHQL-RNLEINDNIP 67

Query: 336 PVFYKAVAQLI 346
              Y+A+AQ++
Sbjct: 68  QELYEAIAQVL 78


>gi|163782344|ref|ZP_02177342.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882377|gb|EDP75883.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1]
          Length = 90

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+RY + ++ AP++VAKG   +A+++ ++A +  +P+ E+  L  +L K + +   IP
Sbjct: 8   AVAIRYTEGKDRAPIVVAKGAGELAERIIELAKKEGVPVLEDRHLIEALLK-IEVFEEIP 66

Query: 336 PVFYKAVAQLI 346
           PV Y+AVA+++
Sbjct: 67  PVLYEAVAKVL 77


>gi|83647067|ref|YP_435502.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Hahella chejuensis KCTC 2396]
 gi|83635110|gb|ABC31077.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Hahella
           chejuensis KCTC 2396]
          Length = 116

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A+AL Y      AP + AKG+  +A+++  IA EH +P++E P L RSL  Q+ +
Sbjct: 19  NDIQQAIALFY--DGKQAPKVSAKGEADLAEEIIAIAREHGVPLYENPELVRSL-AQLDL 75

Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
              IP + Y+ +A++I   YH
Sbjct: 76  GDEIPELLYRVIAEIIAFAYH 96


>gi|213423874|ref|ZP_03356854.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 228

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 56/105 (53%)

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           +KM K+E+K E+K+  GNP +K++++ +    +  ++      + +I+ NPTH  + + +
Sbjct: 81  MKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYF 140

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
                  P++     N  A  +R  A +  +P+  +  LARSLFK
Sbjct: 141 KPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFK 185


>gi|308273541|emb|CBX30143.1| hypothetical protein N47_D29520 [uncultured Desulfobacterium sp.]
          Length = 92

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           + + N  + A+ALRY+     AP ++A G+  +A+K+ ++A EHNI I  +P L   +  
Sbjct: 1   MTLKNELNKAVALRYVPEREQAPRVIATGKGKLAEKIIQVAKEHNIHIHSDPDLV-EMLS 59

Query: 327 QVPINSAIPPVFYKAVAQLIYKIY 350
           Q+  +  IP   YK VA+++  +Y
Sbjct: 60  QLKPDQEIPSDLYKVVAEILVFVY 83


>gi|206889780|ref|YP_002247874.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741718|gb|ACI20775.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 88

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ AP +VAKG+  IA+K+ ++A +H +P+ E+ +L   L K + I   IP
Sbjct: 7   AVALKYEAEKDAAPKVVAKGRGFIAQKIIELARQHGVPMKEDEALVEVLSK-LDIYEEIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              YKAVA+++  +Y  K
Sbjct: 66  VELYKAVAEILVFVYQVK 83


>gi|78776339|ref|YP_392654.1| FlhB domain-containing protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78496879|gb|ABB43419.1| FlhB domain protein [Sulfurimonas denitrificans DSM 1251]
          Length = 83

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   +  AP +VAKGQ   A+ + KIA  HN+PI ++  L   L  +V ++  +P
Sbjct: 4   AAALRYDVEKEGAPRVVAKGQGRSAENIIKIAQLHNLPIRKDEDLI-ELLSKVELDKEVP 62

Query: 336 PVFYKAVAQL---IYKIYHKK 353
              YKAVA++   IYKI  K+
Sbjct: 63  SALYKAVAEVFSFIYKISKKE 83


>gi|32266819|ref|NP_860851.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
           51449]
 gi|32262871|gb|AAP77917.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
           51449]
          Length = 92

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG+N +A K+   A E ++P+F  P L  SL  ++P++S IP
Sbjct: 6   AVALAYNAQNDSAPRVVAKGKNELALKIIAKAQEFDVPLFSNPLLVDSLL-EIPLDSHIP 64

Query: 336 PVFYKAVAQL 345
           P  Y AV ++
Sbjct: 65  PEMYNAVVEV 74


>gi|315648157|ref|ZP_07901258.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
 gi|315276803|gb|EFU40146.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
          Length = 103

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++AP++VAKGQ  +A+ +   A EH +P+ E+ +L   L K + ++  IP
Sbjct: 17  AVALKYTPGESEAPMVVAKGQGKLAESILDKAKEHGVPVQEDAALVEILSK-LDLDQQIP 75

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA+++  +Y
Sbjct: 76  AELYQLVAEVLTYVY 90


>gi|149194925|ref|ZP_01872018.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus
           TB-2]
 gi|149134846|gb|EDM23329.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus
           TB-2]
          Length = 92

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   E+ AP ++AKG+  IA+K+ + A E +IP+F+   L  SL K    N  IP
Sbjct: 9   AAALRYKAYEDLAPKVIAKGKGEIAEKIIQKAKEFDIPLFQNEELVDSLLKID--NDTIP 66

Query: 336 PVFYKAVAQL---IYKIYHK 352
           P  YKAV ++   +YK+  K
Sbjct: 67  PELYKAVVEVFIWLYKMEEK 86


>gi|330893300|gb|EGH25961.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 140

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTE 285
           IK E KQS G+P +K  ++ ++   +  +   A      A +++ NPTHYA+AL Y   E
Sbjct: 1   IKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGE 60

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
              P++  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV   
Sbjct: 61  TPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGH- 118

Query: 346 IYKI 349
           IYK+
Sbjct: 119 IYKV 122


>gi|213029691|ref|ZP_03344138.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 107

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ E 
Sbjct: 4   LAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVEN 63

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             LARSLF +V     IP   ++ VA L+
Sbjct: 64  VELARSLFFEVERGDKIPETLFEPVAALL 92


>gi|302387748|ref|YP_003823570.1| type III secretion exporter [Clostridium saccharolyticum WM1]
 gi|302198376|gb|ADL05947.1| type III secretion exporter [Clostridium saccharolyticum WM1]
          Length = 115

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +N APV+VA G   +A+K+ + A E+ +P++E+ SLA ++  Q+ + S +P
Sbjct: 12  AVALKYDDAKNSAPVIVASGMGYMAEKIIETANENGVPVYEDNSLA-TILTQLELGSQVP 70

Query: 336 PVFYKAVAQL 345
              Y+A+ ++
Sbjct: 71  EELYQAIVEI 80


>gi|54295419|ref|YP_127834.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens]
 gi|53755251|emb|CAH16745.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens]
          Length = 88

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  IP
Sbjct: 8   AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVDLNEEIP 64

Query: 336 PVFYKAVAQLIYKIYH 351
              Y AVAQ++  +Y+
Sbjct: 65  KALYIAVAQILAFLYY 80


>gi|91782705|ref|YP_557911.1| putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like [Burkholderia xenovorans LB400]
 gi|91686659|gb|ABE29859.1| Putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like protein [Burkholderia xenovorans
           LB400]
          Length = 246

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 31/258 (12%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL--HVLL 66
           +K+EAP+ ++I  A  +G    S   ++  S L   +YL F  +P +Y++ S L  HV  
Sbjct: 3   DKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYL-FIEAPHLYALGSQLILHVTT 61

Query: 67  ASATQRKLEDISHIVF--------LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
             A++   + ++            +LT L +    +++P L+            Q   VL
Sbjct: 62  LDASRDFGDQLASTCAALYAFMAPVLTALGVGVLAVLVPELM------------QTRGVL 109

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               V P  KR++   G+K+++S+  L + + + ++     TI+    T+     L  ++
Sbjct: 110 AWKRVAPDVKRLNPINGLKQMFSLRLLWDSVLTIIQF----TILLFLFTQAVVAWLRQLA 165

Query: 179 -ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ---WYSKLKMSKQEIKDEIK 234
            A   S+  H  +T      ++    A+  V  +     Q   W   L+M K EIK E +
Sbjct: 166 PAWEFSLPVHLGYTAIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFR 225

Query: 235 QSYGNPIIKNRQKSIARS 252
              G+P +K+R++++ R 
Sbjct: 226 DDEGDPYVKSRRRALHRE 243


>gi|310641524|ref|YP_003946282.1| flagellar protein fhlb-like protein [Paenibacillus polymyxa SC2]
 gi|309246474|gb|ADO56041.1| Flagellar protein FhlB-like protein [Paenibacillus polymyxa SC2]
          Length = 99

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++AP++VAKG   IA  + + A EH +P+ E+ +L   L K + ++  IP
Sbjct: 15  AVALKYTPGESEAPIVVAKGSGRIADSILEKAKEHGVPVQEDAALVEVLSK-LDLDEQIP 73

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++  IY 
Sbjct: 74  AELYQLVAEVLTYIYQ 89


>gi|205373357|ref|ZP_03226161.1| flagellar biosynthesis protein [Bacillus coahuilensis m4-4]
          Length = 94

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY     DAP L+AKG+ L+A+++ + A E+ I + E+P+L   +  Q+ +N  IP
Sbjct: 9   AIALRYDDMSMDAPKLIAKGKGLVAEQIIEKAKENGIQVQEDPNLVE-MLSQLNMNETIP 67

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA++   +Y
Sbjct: 68  AELYEVVAEVFAYVY 82


>gi|313682765|ref|YP_004060503.1| type iii secretion exporter [Sulfuricurvum kujiense DSM 16994]
 gi|313155625|gb|ADR34303.1| type III secretion exporter [Sulfuricurvum kujiense DSM 16994]
          Length = 83

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY +T+ DAP +VAKG+   A+ + KIA  HN+PI ++  L   L  +V ++  IP
Sbjct: 4   AVALRYDRTKEDAPRVVAKGKGASAENIIKIAELHNLPIHKDEDLVE-LLSKVELDKEIP 62

Query: 336 PVFYKAVAQL---IYKIYHKK 353
              Y AV ++   IYKI + +
Sbjct: 63  EKLYVAVVEVFGFIYKITNPR 83


>gi|94263289|ref|ZP_01287105.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
 gi|94272298|ref|ZP_01292101.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
 gi|93450174|gb|EAT01485.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
 gi|93456372|gb|EAT06496.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
          Length = 96

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP LVAKG   +A+K+ ++A EH +PI E+  L   +  ++ +   IP
Sbjct: 16  AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y  VA+++  IY
Sbjct: 75  PETYLLVAEILAFIY 89


>gi|94267692|ref|ZP_01290961.1| FlhB domain protein [delta proteobacterium MLMS-1]
 gi|93451894|gb|EAT02625.1| FlhB domain protein [delta proteobacterium MLMS-1]
          Length = 96

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP LVAKG   +A+K+ ++A EH +PI E+  L   +  ++ +   IP
Sbjct: 16  AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y  VA+++  IY
Sbjct: 75  PETYLLVAEILAFIY 89


>gi|220932827|ref|YP_002509735.1| FlhB domain protein [Halothermothrix orenii H 168]
 gi|219994137|gb|ACL70740.1| FlhB domain protein [Halothermothrix orenii H 168]
          Length = 95

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY  ++++AP +VA G+  IA+K+ + A +H+IPI ++  +  +L + + I + IP
Sbjct: 16  AVALRYNTSKDNAPRIVASGKGTIAEKIMETARKHDIPIEKDQDIVDALIR-LNIGTEIP 74

Query: 336 PVFYKAVAQLIYKIY 350
              YK +A+++  IY
Sbjct: 75  QELYKVIAEILSFIY 89


>gi|213024578|ref|ZP_03339025.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 183

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%)

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
           +LD    Y      +KM K+E+K E+K+  GNP +K++++ +    +  ++      + +
Sbjct: 22  LLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRL 81

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           I+ NPTH  + + +       P++     N  A  +R  A +  +P+  +  LARSLFK
Sbjct: 82  IVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFK 140


>gi|308068636|ref|YP_003870241.1| FhlB domain-containing protein [Paenibacillus polymyxa E681]
 gi|305857915|gb|ADM69703.1| FhlB domain-containing protein [Paenibacillus polymyxa E681]
          Length = 99

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++AP++VAKG   +A  + + A EH +P+ E+ +L   L K + ++  IP
Sbjct: 15  AVALKYTPGESEAPIVVAKGSGRVADSILEKAKEHGVPVQEDAALVEVLSK-LDLDEQIP 73

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++  IY 
Sbjct: 74  AELYQLVAEVLTYIYQ 89


>gi|125973277|ref|YP_001037187.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405]
 gi|256003757|ref|ZP_05428745.1| FlhB domain protein [Clostridium thermocellum DSM 2360]
 gi|281417480|ref|ZP_06248500.1| type III secretion exporter [Clostridium thermocellum JW20]
 gi|125713502|gb|ABN51994.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405]
 gi|255992318|gb|EEU02412.1| FlhB domain protein [Clostridium thermocellum DSM 2360]
 gi|281408882|gb|EFB39140.1| type III secretion exporter [Clostridium thermocellum JW20]
 gi|316940491|gb|ADU74525.1| type III secretion exporter [Clostridium thermocellum DSM 1313]
          Length = 94

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL+Y   EN+AP ++  G+  IA+K+ + A E+NIPI+E   LA +L   + I   IPP 
Sbjct: 12  ALKYSPEENNAPQIIGLGKGEIAEKILEKAKENNIPIYENEELAAAL-NAMNIGDEIPPE 70

Query: 338 FYKAVAQLI 346
            Y  VAQ++
Sbjct: 71  LYDIVAQIL 79


>gi|16126150|ref|NP_420714.1| flhB-like protein [Caulobacter crescentus CB15]
 gi|221234921|ref|YP_002517357.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000]
 gi|13423358|gb|AAK23882.1| flhB-related protein [Caulobacter crescentus CB15]
 gi|220964093|gb|ACL95449.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000]
          Length = 87

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E +AP +VA GQ  I +K+ + A EH +PI E+P LA++L   + I+  IP
Sbjct: 14  AVALLY--EEPNAPKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQAL-STIEIDEEIP 70

Query: 336 PVFYKAVAQLI 346
              Y+AVA+++
Sbjct: 71  EALYRAVAEVL 81


>gi|237753416|ref|ZP_04583896.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375683|gb|EEO25774.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 94

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q +  AP ++AKG+  +A+K+ + A E +IP+F+  +L  SL   + ++  IP
Sbjct: 11  AVALAYEQNKQRAPKVIAKGEGFLAEKIIEKAKEFDIPLFQSKALVDSLI-HLELDEEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAV ++   +Y 
Sbjct: 70  PTLYKAVVEVFIWLYQ 85


>gi|52842789|ref|YP_096588.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629900|gb|AAU28641.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 112

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  IP
Sbjct: 32  AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEIP 88

Query: 336 PVFYKAVAQLIYKIYH 351
              Y AVAQ++  +Y+
Sbjct: 89  KALYIAVAQILAFLYY 104


>gi|294339812|emb|CAZ88175.1| putative Uncharacterized homolog of the cytoplasmic domain of
           flagellar protein FhlB [Thiomonas sp. 3As]
          Length = 108

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY      AP +VAKGQ L+A+ +   A E  + + E P L + L   V +++ IP
Sbjct: 18  AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76

Query: 336 PVFYKAVAQLI 346
           P  Y AVA+L+
Sbjct: 77  PALYTAVAELL 87


>gi|296135643|ref|YP_003642885.1| type III secretion exporter [Thiomonas intermedia K12]
 gi|295795765|gb|ADG30555.1| type III secretion exporter [Thiomonas intermedia K12]
          Length = 108

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY      AP +VAKGQ L+A+ +   A E  + + E P L + L   V +++ IP
Sbjct: 18  AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76

Query: 336 PVFYKAVAQLI 346
           P  Y AVA+L+
Sbjct: 77  PALYTAVAELL 87


>gi|34558360|ref|NP_908175.1| hypothetical protein WS2076 [Wolinella succinogenes DSM 1740]
 gi|34484079|emb|CAE11075.1| hypothetical protein WS2076 [Wolinella succinogenes]
          Length = 102

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A AL Y   +  AP L+AKG+ +IA+++ + A E  IP+F+   L  SL +  P++
Sbjct: 16  PLPKAAALAYDSQKQRAPKLLAKGKGIIAERIIERARELEIPLFQNELLVNSLLES-PLD 74

Query: 332 SAIPPVFYKAVAQL 345
             IPP  YKAV ++
Sbjct: 75  QEIPPALYKAVVEV 88


>gi|54298571|ref|YP_124940.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris]
 gi|148358686|ref|YP_001249893.1| flagellar protein FlhB [Legionella pneumophila str. Corby]
 gi|296108224|ref|YP_003619925.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
 gi|53752356|emb|CAH13788.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris]
 gi|148280459|gb|ABQ54547.1| flagellar protein FlhB [Legionella pneumophila str. Corby]
 gi|295650126|gb|ADG25973.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
          Length = 88

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  IP
Sbjct: 8   AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEIP 64

Query: 336 PVFYKAVAQLIYKIYH 351
              Y AVAQ++  +Y+
Sbjct: 65  KALYIAVAQILAFLYY 80


>gi|253996297|ref|YP_003048361.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8]
 gi|253982976|gb|ACT47834.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8]
          Length = 119

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NP   A+AL Y  T + AP +VAKG+ LIA+++   A +H++ + E   L  +L  QV +
Sbjct: 25  NPNQQAIALTYA-TGDYAPRVVAKGRGLIAEQIIARAKQHDVFVHESKDLV-ALLMQVDL 82

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
           +  IPP  Y+A+A+++  +Y
Sbjct: 83  DDHIPPTLYQAIAEILSWLY 102


>gi|70729068|ref|YP_258804.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68343367|gb|AAY90973.1| FlhB domain protein [Pseudomonas fluorescens Pf-5]
          Length = 109

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL+Y      AP L AKG + +A+ + KIA ++ +PI+E   L + L  ++ + 
Sbjct: 6   PPRQAIALKY--DGQQAPTLTAKGDDELAEAILKIARDYEVPIYENAELVK-LLARLELG 62

Query: 332 SAIPPVFYKAVAQLI 346
            +IPP  Y+ +A++I
Sbjct: 63  ESIPPELYRTIAEII 77


>gi|254460203|ref|ZP_05073619.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium
           HTCC2083]
 gi|206676792|gb|EDZ41279.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 217

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 33/233 (14%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D   +K+  P+ KK++D   +G    S E ++  S     + L       + S  +
Sbjct: 1   MAEEDDVADKSHDPTQKKLDDVRKKGEVAKSNEVNVALSYFGIWVLLAVLGGVSVSSFGT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYL--------- 111
            L   L +A  R+            H S        PGL   ++ G G ++         
Sbjct: 61  TLQSGLLNAFSREPS---------LHFS--------PGLFAPLLLGAGQFVGLMAIMPAA 103

Query: 112 -------IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
                   +R  +   + +KP   R+S+ +  K  +    L  F KSFVK+++    + +
Sbjct: 104 LIVLALLARRTFLFTSSKLKPKASRISILKNAKNKFGRGGLFEFAKSFVKLLVFSLCLGL 163

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
            L  N+ T++   +A+    +   F  +   L + +L  A + ++D GW   +
Sbjct: 164 FLNANFDTIVVTSAASERGAISVLFDLMTSFLSLAVLIAAVIAIIDYGWQVSE 216


>gi|307611462|emb|CBX01131.1| hypothetical protein LPW_28301 [Legionella pneumophila 130b]
          Length = 88

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  IP
Sbjct: 8   AVALRY--DGNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVHLNEEIP 64

Query: 336 PVFYKAVAQLIYKIYH 351
              Y AVAQ++  +Y+
Sbjct: 65  KALYIAVAQILAFLYY 80


>gi|322419281|ref|YP_004198504.1| type III secretion exporter [Geobacter sp. M18]
 gi|320125668|gb|ADW13228.1| type III secretion exporter [Geobacter sp. M18]
          Length = 94

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   E  AP ++AKG  + A+ +  +A EH + + + P L  ++  QV +++ IP
Sbjct: 11  AVAMAYSPEEGSAPRVIAKGSGISAEAIISLAREHGVYVHQSPELV-AMLMQVDLDAEIP 69

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+L+  +Y
Sbjct: 70  PELYQAVAELLAWLY 84


>gi|254491433|ref|ZP_05104612.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxidans DMS010]
 gi|224462911|gb|EEF79181.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxydans DMS010]
          Length = 96

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    ++AP + A G+  IA+++ +IA EHNIP+ E+  LA  L   + +   IP
Sbjct: 10  AIALQY--DGDNAPTVTASGEGAIAEEILRIAREHNIPLKEDALLAE-LLSDLNLGEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
           P+ Y+ +A++I   Y
Sbjct: 67  PMLYRVIAEVIAYAY 81


>gi|261420589|ref|YP_003254271.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61]
 gi|319768259|ref|YP_004133760.1| type III secretion exporter [Geobacillus sp. Y412MC52]
 gi|261377046|gb|ACX79789.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61]
 gi|317113125|gb|ADU95617.1| type III secretion exporter [Geobacillus sp. Y412MC52]
          Length = 98

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +T PT  A  +RY ++   +P++VA+G   +A+K+ ++A +H+IPI E+P L ++L  Q+
Sbjct: 14  MTGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDRIPPQLYAVIA 85


>gi|212639580|ref|YP_002316100.1| hypothetical protein Aflv_1754 [Anoxybacillus flavithermus WK1]
 gi|212561060|gb|ACJ34115.1| Uncharacterized protein containing cytoplasmic domain of flagellar
           protein FhlB [Anoxybacillus flavithermus WK1]
          Length = 87

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++ APV+VAKG+  +A ++ + A ++++PI+E+ +LA ++  Q+ +N  IP
Sbjct: 6   AVALSY-DEQHIAPVVVAKGEGAVADRIIERAKQYDVPIYEDETLA-TMLGQLQLNETIP 63

Query: 336 PVFYKAVAQLIYKIYH 351
              YK VA++   IY 
Sbjct: 64  EELYKVVAEVFAFIYQ 79


>gi|307826053|ref|ZP_07656266.1| type III secretion exporter [Methylobacter tundripaludum SV96]
 gi|307732892|gb|EFO03756.1| type III secretion exporter [Methylobacter tundripaludum SV96]
          Length = 94

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y     +AP + AKG  L A+++ +IA  H IP+  EP LAR +  Q+P+   IP
Sbjct: 11  AIALKY--DGKNAPKVTAKGSGLTAEQILQIAELHGIPLQTEPELAR-ILAQIPLGDEIP 67

Query: 336 PVFYKAVAQLI 346
              Y AVA++I
Sbjct: 68  NELYVAVAEII 78


>gi|90424888|ref|YP_533258.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
 gi|90106902|gb|ABD88939.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
          Length = 88

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y +T   AP ++AKG+  I  K+ ++A  H+IPI E   LA +L K V I 
Sbjct: 6   PNQIAVALHYDRT--GAPTVIAKGKGAIGAKIVEVARAHDIPIEENEILAGALSK-VEIG 62

Query: 332 SAIPPVFYKAVAQLI 346
             IP   YKAVA+++
Sbjct: 63  DEIPQELYKAVAEVL 77


>gi|187478213|ref|YP_786237.1| flagellar biosynthesis protein [Bordetella avium 197N]
 gi|115422799|emb|CAJ49327.1| putative flagellar biosynthesis protein [Bordetella avium 197N]
          Length = 97

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y + +  AP +VAKG   +A+ + + A EH++ + E P L   L  QV ++S IP
Sbjct: 12  AVAISYDEADG-APRVVAKGYGQMAETIVRTAREHDLYVHESPELV-GLLMQVDLDSHIP 69

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 70  PALYTAVAELLAWLY 84


>gi|157737630|ref|YP_001490313.1| FlhB domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699484|gb|ABV67644.1| FlhB domain protein [Arcobacter butzleri RM4018]
          Length = 94

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL+Y   +++AP + AKG+ + A  + KIA E+ IPI ++  L   L  Q+ I+  
Sbjct: 11  QKAVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDIDKE 69

Query: 334 IPPVFYKAVAQLIYKIYH 351
           IP   Y+AVA++   IY 
Sbjct: 70  IPTSMYRAVAEIFSFIYD 87


>gi|149182544|ref|ZP_01861016.1| flagellar biosynthesis [Bacillus sp. SG-1]
 gi|148849736|gb|EDL63914.1| flagellar biosynthesis [Bacillus sp. SG-1]
          Length = 98

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY ++E  AP ++A+G   +A K+ ++A EHNI + E+ SL +SL   +
Sbjct: 14  MNGPT--AAVIRYEESEGKAPKVIAQGTGHLATKIMELAKEHNITMQEDSSLVQSLL-DI 70

Query: 329 PINSAIPPVFYKAVAQLI 346
            +   +PP  Y  +A+++
Sbjct: 71  DLGENVPPQLYSVIAEIL 88


>gi|114777940|ref|ZP_01452854.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1]
 gi|114551727|gb|EAU54279.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1]
          Length = 95

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
           H A+AL +    + AP + AKG   +A ++ ++A E+NIPI E+  L + +F Q+ I ++
Sbjct: 6   HQAIALNWDPYLDAAPKITAKGSGQLADEIIRLARENNIPIREDRDLVQ-IFSQLDIGAS 64

Query: 334 IPPVFYKAVAQLIYKIY 350
           +PP  + A+A+++  IY
Sbjct: 65  VPPEVHTAIAEILAFIY 81


>gi|254501917|ref|ZP_05114068.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11]
 gi|222437988|gb|EEE44667.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11]
          Length = 97

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+AL Y   +  APV+ AKG    AK++ +IA E  +PI + P +A +L  Q+ 
Sbjct: 5   TKPEKIAVALEY--EDGGAPVVSAKGTGSAAKRIEEIAREAGVPIEQNPMMAEAL-SQIE 61

Query: 330 INSAIPPVFYKAVAQLI 346
           ++  IP   Y+AVA L+
Sbjct: 62  VDHEIPMELYQAVAVLV 78


>gi|224370762|ref|YP_002604926.1| FlhB1 [Desulfobacterium autotrophicum HRM2]
 gi|223693479|gb|ACN16762.1| FlhB1 [Desulfobacterium autotrophicum HRM2]
          Length = 88

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y +    +P + AKG  ++A+K+  IA +H++P+ ++P L   L   + IN  IP
Sbjct: 6   AVALKYDRAAGSSPKVTAKGSGIVAQKIIDIAEQHDVPVKKDPDLVEVL-AGLDINQEIP 64

Query: 336 PVFYKAVAQLIYKIY 350
              Y AVA+L+  +Y
Sbjct: 65  QEIYVAVAELLAFVY 79


>gi|297538192|ref|YP_003673961.1| type III secretion exporter [Methylotenera sp. 301]
 gi|297257539|gb|ADI29384.1| type III secretion exporter [Methylotenera sp. 301]
          Length = 119

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + NP   A+AL Y   E  AP +VAKG+  IA+++   A EH++ + E   L  +L  QV
Sbjct: 26  VVNPNQQAIALAYAAGEY-APKVVAKGRGAIAEQIIARAKEHDVFVHESKDLV-ALLMQV 83

Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
            ++  IPP  Y+A+A+++  +Y
Sbjct: 84  DLDDHIPPALYQAIAEILAWLY 105


>gi|315637405|ref|ZP_07892618.1| FlhB domain protein [Arcobacter butzleri JV22]
 gi|315478297|gb|EFU69017.1| FlhB domain protein [Arcobacter butzleri JV22]
          Length = 94

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A+AL+Y   +++AP + AKG+ + A  + KIA E+ IPI ++  L   L  Q+ +
Sbjct: 8   NFVQKAVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDV 66

Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
           +  IP   Y+AVA++   IY 
Sbjct: 67  DKEIPTSMYRAVAEIFSFIYD 87


>gi|254459185|ref|ZP_05072607.1| FlhB domain protein [Campylobacterales bacterium GD 1]
 gi|207084078|gb|EDZ61368.1| FlhB domain protein [Campylobacterales bacterium GD 1]
          Length = 83

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   +  AP +VAKGQ   A+ + KIA  HN+PI ++  L   L  +V ++  +P
Sbjct: 4   AAALRYNIDKESAPRVVAKGQGKSAENIIKIAELHNLPIKKDEDLM-ELLSKVELDKEVP 62

Query: 336 PVFYKAVAQL---IYKIYHK 352
              YKAVA++   IYK  +K
Sbjct: 63  AALYKAVAEVFSFIYKTTNK 82


>gi|313905165|ref|ZP_07838534.1| type III secretion exporter [Eubacterium cellulosolvens 6]
 gi|313470068|gb|EFR65401.1| type III secretion exporter [Eubacterium cellulosolvens 6]
          Length = 103

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   +N APV+VA G   +A+K+ + A +  +P++E+ SLA SL  Q+ +   IP
Sbjct: 12  AAALRYDPEKNGAPVIVASGMGYMAEKITETAMKAGVPVYEDDSLA-SLLTQLKLGKEIP 70

Query: 336 PVFYKAVAQL 345
              ++A+ ++
Sbjct: 71  EELFQAIVEI 80


>gi|167628834|ref|YP_001679333.1| flagellar biosynthesis protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591574|gb|ABZ83322.1| flagellar biosynthesis protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 100

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           ALRY    +DAPV++A+G+  +A+K+ ++A E NIPI E+P L  +L   + +   IPP 
Sbjct: 21  ALRY-DPNSDAPVVIAQGKGHLARKIIEMAKEKNIPIQEDPLLVENLI-DMDLGDTIPPQ 78

Query: 338 FYKAVAQLIYKI 349
            Y  VA+++  I
Sbjct: 79  LYLVVAEILLMI 90


>gi|28901209|ref|NP_800864.1| putative type III secretion system EscU protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|28809722|dbj|BAC62697.1| putative type III secretion system EscU protein [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 352

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 157/358 (43%), Gaps = 33/358 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPG 54
           M   ++ + K   P+ KK+ D   +G  P +       E  +F+ I+   +Y LF +S  
Sbjct: 1   MMAEESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLELIVFTIIIIFTLYYLFEYSGE 60

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            +S      VL A  T      I  + + +  L+L           L ++  +  +++  
Sbjct: 61  WFSA-----VLYADITVGLFTGIDVLWWCVGGLAL-----------LKLVMAVFEWVMIN 104

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SLTEN 169
             V++   +     +++   G K I+ +  +    +SF K++ +  ++ +      +  +
Sbjct: 105 KAVISTESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGS 161

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
              +L+ I+  P+ I Y+  +++    +  L++   +  +D     + +  K +M+  E+
Sbjct: 162 QLYLLNEINNYPYFI-YYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 220

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E+K++ G+P IK+ +K   R      + +   + T  + NPTH  + + Y       P
Sbjct: 221 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 279

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346
           V++      +A + RK      IPI E   LAR+++ ++      +P  F+  VA +I
Sbjct: 280 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALII 337


>gi|304404230|ref|ZP_07385892.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9]
 gi|304347208|gb|EFM13040.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9]
          Length = 104

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           TN    A+AL+Y   E  APV++AKG+  +A+ +   A E+ +PI E+ SL   L K + 
Sbjct: 14  TNQARKAVALKYEPGERSAPVVIAKGKGHLAEAIVAKAAENGVPIQEDSSLVEVLSK-LD 72

Query: 330 INSAIPPVFYKAVAQLIYKIY 350
           I+  IP   Y  VA+++  +Y
Sbjct: 73  IDQEIPQELYALVAEILSFVY 93


>gi|297584023|ref|YP_003699803.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10]
 gi|297142480|gb|ADH99237.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10]
          Length = 98

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y  T + AP + AKG+  +A+++   A EH+IPI E+ SL   L  Q+ I+  IP
Sbjct: 15  AVALGYEVTRDSAPTIKAKGKGYVAEEIISRAKEHDIPIQEDKSLV-ELLSQLEIHEKIP 73

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA++   IY 
Sbjct: 74  EDLYEVVAEVFAFIYR 89


>gi|153836050|ref|ZP_01988717.1| VcsU2 [Vibrio parahaemolyticus AQ3810]
 gi|149750804|gb|EDM61549.1| VcsU2 [Vibrio parahaemolyticus AQ3810]
          Length = 351

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 156/355 (43%), Gaps = 33/355 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57
            ++ + K   P+ KK+ D   +G  P +       E  +F+ I+   +Y LF +S   +S
Sbjct: 3   EESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLELIVFTIIIIFTLYYLFEYSGEWFS 62

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
                 VL A  T      I  + + +  L+L           L ++  I  +++    V
Sbjct: 63  A-----VLYADITVGLFTGIDVLWWCVGGLAL-----------LKLVMAIFEWVMINKAV 106

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI-----SLTENYFT 172
           ++   +     +++   G K I+ +  +    +SF K++ +  ++ +      +  +   
Sbjct: 107 ISTESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY 163

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +L+ I+  P+ I Y+  +++    +  L++   +  +D     + +  K +M+  E+K+E
Sbjct: 164 LLNEINNYPYFI-YYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNE 222

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K++ G+P IK+ +K   R      + +   + T  + NPTH  + + Y       PV++
Sbjct: 223 LKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRPVVL 281

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346
                 +A + RK      IPI E   LAR+++ ++      +P  F+  VA +I
Sbjct: 282 KICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALII 336


>gi|326204817|ref|ZP_08194671.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782]
 gi|325985029|gb|EGD45871.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782]
          Length = 98

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +A AL+Y    + AP +VA G+  IA+++ + A E+N+P++++ +LA++L   + I   I
Sbjct: 12  HAAALQYSPDSDAAPRIVAAGKGQIAERIIQKAQENNVPLYQDTNLAQTL-SSLSIGDEI 70

Query: 335 PPVFYKAVAQLI 346
           PP  Y+ VA+++
Sbjct: 71  PPEIYEVVAEIL 82


>gi|85859194|ref|YP_461396.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
 gi|85722285|gb|ABC77228.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
          Length = 92

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A A+RY  T + AP + AKG   +A+K+ ++A ++NIP+  +P L + L + + I+  IP
Sbjct: 7   AAAIRYDGTVDVAPKVTAKGCGFVAEKIIELAQKNNIPVRNDPGLVQILCR-LDIDEQIP 65

Query: 336 PVFYKAVAQLIYKIY 350
              YKAVA+++  +Y
Sbjct: 66  EDLYKAVAEILAYVY 80


>gi|302392093|ref|YP_003827913.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501]
 gi|302204170|gb|ADL12848.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501]
          Length = 96

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y   +N+AP +VAKG N +AKK+   A E++IPI ++ +L ++L  Q+ +   I 
Sbjct: 14  AAALKYDPEQNNAPQVVAKGSNEVAKKIIAKAKENDIPIHQDDTLVKNLI-QLDLEEEIT 72

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++  IY 
Sbjct: 73  GELYQIVAEVLSFIYQ 88


>gi|116696302|ref|YP_841878.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
 gi|113530801|emb|CAJ97148.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
          Length = 97

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q  + AP +VAKG  ++A+ +   A E  + I + P+L  +L  QV ++S +P
Sbjct: 11  AIALSY-QHRDRAPRVVAKGYGVVAEAIIARAREAGVYIHDSPTLV-NLLMQVDLDSHVP 68

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y AVA+L+  IYH
Sbjct: 69  PQLYVAVAELLAWIYH 84


>gi|260362767|ref|ZP_05775636.1| protein VcsU2 [Vibrio parahaemolyticus K5030]
 gi|260880055|ref|ZP_05892410.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034]
 gi|260895172|ref|ZP_05903668.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466]
 gi|308085801|gb|EFO35496.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466]
 gi|308091813|gb|EFO41508.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034]
 gi|308112085|gb|EFO49625.1| protein VcsU2 [Vibrio parahaemolyticus K5030]
          Length = 351

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 3/175 (1%)

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +L+ I+  P+ I Y+  +++    +  L++   +  +D     + +  K +M+  E+K+E
Sbjct: 164 LLNEINNYPYFI-YYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEMKNE 222

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K++ G+P IK+ +K   R      + +   + T  + NPTH  + + Y       PV++
Sbjct: 223 LKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRPVVL 281

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-IPPVFYKAVAQLI 346
                 +A + RK      IPI E   LAR+++ ++      +P  F+  VA +I
Sbjct: 282 KICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALII 336


>gi|251797459|ref|YP_003012190.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
 gi|247545085|gb|ACT02104.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
          Length = 101

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + APV+ AKG+  +A ++ + A EH++P+ ++ SL   L K + ++ +IP
Sbjct: 17  AVALKYEPGAHKAPVVTAKGRGYLADQILEQAAEHHVPVQQDSSLVEVLSK-LDVDQSIP 75

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y  VA+++  +Y
Sbjct: 76  PELYTLVAEILSFVY 90


>gi|295689582|ref|YP_003593275.1| type III secretion exporter [Caulobacter segnis ATCC 21756]
 gi|295431485|gb|ADG10657.1| type III secretion exporter [Caulobacter segnis ATCC 21756]
          Length = 87

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +A+  +  +  AP ++A GQ  + +K+ + A EH +PI E+P LA++L   + I+  IP 
Sbjct: 13  IAVALLHDDASAPRVLASGQGWVGEKIIETAREHGVPIEEDPVLAQAL-STIEIDEEIPD 71

Query: 337 VFYKAVAQLI 346
             Y+AVA+++
Sbjct: 72  ALYRAVAEVL 81


>gi|77918709|ref|YP_356524.1| hypothetical protein Pcar_1105 [Pelobacter carbinolicus DSM 2380]
 gi|77544792|gb|ABA88354.1| putative cytoplasmic domain of flagellar protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 90

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N  + A+AL Y +    APV+VA G+  +A+K+   A E  + +  +P L   +  +VP+
Sbjct: 5   NRQNKAVALTYQKASGKAPVVVASGKGAVAEKILATAGEAGVEVVRDPDLVE-ILDKVPL 63

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y+AVA+++  +Y
Sbjct: 64  GQEIPEELYQAVAEILAFVY 83


>gi|313200541|ref|YP_004039199.1| flagellar biosynthetic protein [Methylovorus sp. MP688]
 gi|312439857|gb|ADQ83963.1| putative flagellar biosynthetic protein [Methylovorus sp. MP688]
          Length = 101

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y +T + AP +VAKG+ L+A+++   A EH++ + E   L  SL  Q+ ++ 
Sbjct: 11  TQQAIALAY-ETGDFAPRVVAKGRGLVAEQIIARAREHDVFVHESKELV-SLLMQIDLDD 68

Query: 333 AIPPVFYKAVAQLIYKIY 350
            IPP  Y A+A+++  +Y
Sbjct: 69  HIPPKLYMAIAEILAWLY 86


>gi|118474492|ref|YP_892339.1| FlhB domain-containing protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413718|gb|ABK82138.1| FlhB domain protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 87

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  ++AP ++A G+  +A K+ + A +H IPI E+  L   L K + IN  IP
Sbjct: 7   AVALGYNKKRDNAPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVEILSK-IDINQEIP 65

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   +Y 
Sbjct: 66  PNLYKAVAEVFSFLYR 81


>gi|188996729|ref|YP_001930980.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931796|gb|ACD66426.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 87

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY +  + AP +VAKG+ +IA+++ ++A +H + + E+P+L   L   + +   IP
Sbjct: 8   AVALRYERYRDSAPKVVAKGKGIIAERIIEVAKQHGVYLKEDPTLVEVL-SGLELYEEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              YK +A++   IY  K
Sbjct: 67  EELYKVIAEIFVLIYQAK 84


>gi|260887870|ref|ZP_05899133.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185]
 gi|330838735|ref|YP_004413315.1| type III secretion exporter [Selenomonas sputigena ATCC 35185]
 gi|260862376|gb|EEX76876.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185]
 gi|329746499|gb|AEB99855.1| type III secretion exporter [Selenomonas sputigena ATCC 35185]
          Length = 110

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   +  AP +VAKG+  +A+ +   A ++ IP+++  SL   L   + ++  IP
Sbjct: 24  AVALRYAPEKQHAPKVVAKGRGFVAENILAAAQKNAIPVYQNKSLVNMLMA-LELDREIP 82

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  +Y
Sbjct: 83  PELYRAVAEVLAYVY 97


>gi|167646750|ref|YP_001684413.1| flhB-like protein [Caulobacter sp. K31]
 gi|167349180|gb|ABZ71915.1| flhB-related protein [Caulobacter sp. K31]
          Length = 90

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E +AP +VA G+  +  K+ + A EH +PI E  +LA++L   + ++  IP
Sbjct: 13  AVALRY--EEPNAPRVVATGRGWLGDKIIETAREHGVPIEENAALAQAL-STIELDEEIP 69

Query: 336 PVFYKAVAQLI 346
              Y+AVA+++
Sbjct: 70  EALYRAVAEIL 80


>gi|258592464|emb|CBE68773.1| Cytoplasmic domain of flagellar protein FhlB-like protein protein
           [NC10 bacterium 'Dutch sediment']
          Length = 104

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   EN AP +VA G+  IA+++  +A  H I + ++P L   L  ++ I  AIP
Sbjct: 14  AVALKYEAGENGAPEVVASGRGRIAEQIIALAKAHGIYVKQDPELVEVL-SRLDIGDAIP 72

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y  VA+++  +Y
Sbjct: 73  PELYAVVAEILAFVY 87


>gi|307946460|ref|ZP_07661795.1| type III secretion protein [Roseibium sp. TrichSKD4]
 gi|307770124|gb|EFO29350.1| type III secretion protein [Roseibium sp. TrichSKD4]
          Length = 99

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY      AP + AKG   +A ++ +IA E  +PI ++P +A +L  Q+ I+  IP
Sbjct: 16  AVALRY--DNEGAPTVTAKGTGSVADRIEEIARESGVPIEQDPMMAEAL-SQIDIDEEIP 72

Query: 336 PVFYKAVAQLI 346
              Y+AVA LI
Sbjct: 73  IELYQAVAVLI 83


>gi|296162493|ref|ZP_06845284.1| type III secretion exporter [Burkholderia sp. Ch1-1]
 gi|295887306|gb|EFG67133.1| type III secretion exporter [Burkholderia sp. Ch1-1]
          Length = 246

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 11/248 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NK+EAP+ K+I  A  +G    S   ++  S L   +YL F  +P +Y++ ++L + + +
Sbjct: 3   NKSEAPTPKRIRRARRDGEISKSTHLTVAFSGLCWWLYL-FIEAPHLYALGNELILRVTT 61

Query: 69  -ATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
               R+  D   S    L   +S   + L +  L + +       L+Q   +L    V P
Sbjct: 62  LDGSREFGDRLASTCAALYAFMSPVLAALGVGALAVLV-----PELMQTRGLLAWKRVMP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN-PHSI 184
             KR++   G+K+++S+  + + + + ++  ++  +   +L      +    + + P  +
Sbjct: 117 DVKRLNPVNGLKQMFSLRLVWDTVLTIIQFTILLFLFVQALVAWLRQLAPIWTFSLPVHL 176

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
            Y A      +L M +  IA   V D       W   L+M K EIK E +   G+P +K+
Sbjct: 177 GYAAVSHSHLLLWMTVSQIAP-GVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKS 235

Query: 245 RQKSIARS 252
           R++++ R 
Sbjct: 236 RRRALHRE 243


>gi|220928169|ref|YP_002505078.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10]
 gi|219998497|gb|ACL75098.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10]
          Length = 98

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +A AL+Y    + AP +VA G+  IA+++ + A E N+P++++ +LA++L   + I   I
Sbjct: 12  HAAALQYSPDTDSAPKIVAAGKGQIAERIIQKAQETNVPLYQDSNLAQTL-SSLCIGDEI 70

Query: 335 PPVFYKAVAQLI 346
           PP  Y+ VA+++
Sbjct: 71  PPEIYEVVAEIL 82


>gi|185177885|pdb|3BZL|C Chain C, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177887|pdb|3BZL|D Chain D, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177889|pdb|3BZO|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177903|pdb|3C00|B Chain B, Crystal Structural Of The Mutated G247t EscuSPAS C-
           Terminal Domain
          Length = 83

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +   
Sbjct: 1   PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|225620909|ref|YP_002722167.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae
           WA1]
 gi|225215729|gb|ACN84463.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae
           WA1]
          Length = 89

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y +  ++AP++V+KG N +AK+M  IA +H +P+  +   A+ L  Q+ I   IP
Sbjct: 11  AAALLYNREIHNAPIVVSKGNNYLAKRMVDIARKHKVPVISDEDTAKHLM-QLEIGEEIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AV+ ++  IY
Sbjct: 70  YSLYEAVSIILKYIY 84


>gi|153952619|ref|YP_001398106.1| FlhB domain-containing protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152940065|gb|ABS44806.1| FlhB domain protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 93

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A EH +PI E+  L   L K + +   IP
Sbjct: 11  AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   IY 
Sbjct: 70  PNMYKAVAEVFAFIYQ 85


>gi|57237689|ref|YP_178937.1| FlhB domain-containing protein [Campylobacter jejuni RM1221]
 gi|86150272|ref|ZP_01068499.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152177|ref|ZP_01070389.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153293|ref|ZP_01071497.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597543|ref|ZP_01100777.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612445|ref|YP_001000532.1| FlhB domain-containing protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148926549|ref|ZP_01810231.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157415115|ref|YP_001482371.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005466|ref|ZP_02271224.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205356346|ref|ZP_03223111.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562476|ref|YP_002344255.1| hypothetical protein Cj0848c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283957164|ref|ZP_06374628.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|57166493|gb|AAW35272.1| FlhB domain protein [Campylobacter jejuni RM1221]
 gi|85839388|gb|EAQ56650.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840962|gb|EAQ58212.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843019|gb|EAQ60230.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249511|gb|EAQ72471.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|88190135|gb|EAQ94110.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360182|emb|CAL34976.1| conserved hypothetical protein Cj0848c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145845243|gb|EDK22337.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157386079|gb|ABV52394.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|205345731|gb|EDZ32369.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|283791340|gb|EFC30145.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|284926093|gb|ADC28445.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni IA3902]
 gi|307747756|gb|ADN91026.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315058298|gb|ADT72627.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315926508|gb|EFV05890.1| flhB domain protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315929380|gb|EFV08585.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 93

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A EH +PI E+  L   L K + +   IP
Sbjct: 11  AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   IY 
Sbjct: 70  PNMYKAVAEVFAFIYQ 85


>gi|253998466|ref|YP_003050529.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4]
 gi|253985145|gb|ACT50002.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4]
          Length = 101

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y +T + AP +VAKG+ L+A+++   A EH++ + E   L  SL  Q+ ++ 
Sbjct: 11  TQQAIALAY-ETGDFAPRVVAKGRGLVAEQIIARAREHDVFLHESKELV-SLLMQIDLDD 68

Query: 333 AIPPVFYKAVAQLIYKIY 350
            IPP  Y A+A+++  +Y
Sbjct: 69  HIPPKLYMAIAEILAWLY 86


>gi|226326420|ref|ZP_03801938.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198]
 gi|225205203|gb|EEG87557.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198]
          Length = 145

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M K E+K E K   G+P IK+ +K + +  +   M +    ++ +I NPTH A+ + +  
Sbjct: 3   MEKHEVKQENKNMEGDPEIKSTRKQLHQELLDEPMKKVIRDSSAVIVNPTHVAVGIYFDP 62

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
                P++  K  N  A  ++  A E   P+   P LAR ++
Sbjct: 63  DNGIMPLVSLKCVNAKALAVKSYAKEVGTPVVRYPELARKIY 104


>gi|222082192|ref|YP_002541557.1| type III secretion system translocation protein [Agrobacterium
           radiobacter K84]
 gi|221726871|gb|ACM29960.1| type III secretion system translocation protein [Agrobacterium
           radiobacter K84]
          Length = 268

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 16/271 (5%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ND  + K+  PS  K++    EG    S+E  +  S+LA   YL +     +     
Sbjct: 1   MSKNDDTEEKSLPPSRVKLDRLRREGQVARSKEIPVAISVLAIAAYLAWALGDILRDFAR 60

Query: 61  DLHVLLASA--TQRKLEDISHIVFLLTHLS-LSASRLVIPGLL-LFMMFGIGSYLIQRIP 116
              V   +A  T     D    +  +T+++ +    L +P LL L +   +     Q  P
Sbjct: 61  IFGVGFEAAGLTGSPQADPGFPLTAVTNMAEILFGILWVPMLLGLAITIAVSILDGQGFP 120

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTM 173
           V +  H+     R++   GI +++S+ NLV F+K  VK+IL+   G    +      F  
Sbjct: 121 V-STKHMNFDLNRLNPASGIMKLFSVTNLVEFLKGIVKVILLSVAGGGAVLYFLNGIFWA 179

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                A   S+  H   T+  V   I   +      D+  S   +  + +M+K E + E 
Sbjct: 180 PLCGEACSLSVAAHLIGTIVVVAAAI---MLAAAFFDLSISRLLFRREHRMTKTEARREH 236

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
           K + G+P +K+     AR R+  +M  A  R
Sbjct: 237 KDTQGDPHLKS-----ARRRVGAEMRNAPPR 262


>gi|57167848|ref|ZP_00366988.1| FlhB domain protein [Campylobacter coli RM2228]
 gi|305432127|ref|ZP_07401293.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20]
 gi|57020970|gb|EAL57634.1| FlhB domain protein [Campylobacter coli RM2228]
 gi|304444792|gb|EFM37439.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20]
 gi|315931143|gb|EFV10116.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 93

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A EH +PI E+  L   L K + +   IP
Sbjct: 11  AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   IY 
Sbjct: 70  PNMYKAVAEVFAFIYQ 85


>gi|289811230|ref|ZP_06541859.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 93

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 41/76 (53%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ E   LARSLF +V  
Sbjct: 3   NPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVER 62

Query: 331 NSAIPPVFYKAVAQLI 346
              IP   ++ VA L+
Sbjct: 63  GDKIPETLFEPVAALL 78


>gi|56421679|ref|YP_148997.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426]
 gi|56381521|dbj|BAD77429.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426]
          Length = 98

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY ++   +P++VA+G   +A+K+ ++A +H++PI E+P L ++L  Q+
Sbjct: 14  MNGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHVPIQEDPLLVQNLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDRIPPQLYAVIA 85


>gi|95929897|ref|ZP_01312638.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134193|gb|EAT15851.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas
           acetoxidans DSM 684]
          Length = 92

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           +P   A+A++Y +   DAP++VA G+  +A+ + + A +  + I  +P L   L  ++P+
Sbjct: 4   DPVKKAVAVKYDKEVADAPLIVASGKGQLAENIIQAAEKAGLEISHDPDLVE-LLAKIPV 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
            S IP   Y+AVA+++  +Y
Sbjct: 63  GSEIPSELYQAVAEILAYVY 82


>gi|296273468|ref|YP_003656099.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299]
 gi|296097642|gb|ADG93592.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299]
          Length = 91

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL+Y   ++ AP +VAKG   +A  + KIA E+NIPI ++  L   L  ++ +N  IP  
Sbjct: 12  ALKYNMQDDTAPRVVAKGIGELASNIIKIAKENNIPIKKDEDLVE-LLTKLDVNQQIPNN 70

Query: 338 FYKAVAQLIYKIYH 351
            YKAVA++   IY 
Sbjct: 71  LYKAVAEVFAFIYD 84


>gi|146307815|ref|YP_001188280.1| flagellar protein FhlB-like protein [Pseudomonas mendocina ymp]
 gi|145576016|gb|ABP85548.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Pseudomonas mendocina ymp]
          Length = 114

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +APVL AKG + +A+ +  IA E+ +PI+E   L R L  ++ +  AIP
Sbjct: 13  AIALNY--DGQNAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 69

Query: 336 PVFYKAVAQLI 346
              Y+ +A++I
Sbjct: 70  EALYRCIAEII 80


>gi|328544226|ref|YP_004304335.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [polymorphum gilvum SL003B-26A1]
 gi|326413968|gb|ADZ71031.1| Cytoplasmic domain of flagellar protein FhlB-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 105

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   +  AP + AKG+  +A+++ + A  H +PI  +P LA +L  Q+ I+  IP
Sbjct: 24  AVALHY--DKAGAPTVTAKGRGAVARRIEETARAHGVPIEADPLLAEAL-AQIEIDQEIP 80

Query: 336 PVFYKAVAQLI 346
              Y+AVA LI
Sbjct: 81  VELYQAVAVLI 91


>gi|218778848|ref|YP_002430166.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760232|gb|ACL02698.1| FlhB domain-containing protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 90

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    ++AP + A G+ +IA+K+  +A +H +P+ E+P L   L  ++ +N  IP
Sbjct: 8   AVALKYNALADNAPRVTATGKGIIAEKIIDLARKHGVPVQEDPDLVEVL-ARLDLNEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y  VA+L+  +Y
Sbjct: 67  AELYVVVAELLSFVY 81


>gi|261885341|ref|ZP_06009380.1| FlhB domain-containing protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 87

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  +++P ++A G+  +A K+ + A +H IPI E+  L   L K + IN  IP
Sbjct: 7   AVALGYNKKRDNSPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVEILSK-IDINQEIP 65

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   +Y 
Sbjct: 66  PNLYKAVAEVFSFLYR 81


>gi|220934523|ref|YP_002513422.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995833|gb|ACL72435.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 94

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y  +  +AP + A G   +A+++ +IA EH++P+ E+  L  +L  QVP+ 
Sbjct: 7   PPRKAVALHY--SGRNAPRVTASGVGQVAERILEIAREHDVPVHEDALLTAAL-SQVPLG 63

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y AVA+++  +Y
Sbjct: 64  DEIPENLYVAVAEVLAFVY 82


>gi|320529139|ref|ZP_08030231.1| FlhB domain protein [Selenomonas artemidis F0399]
 gi|320138769|gb|EFW30659.1| FlhB domain protein [Selenomonas artemidis F0399]
          Length = 107

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+RY   ++ AP + AKG++L+A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 23  AVAVRYDVEKDRAPRVTAKGRSLVADRILAEAKKNGIPVYQNKSLVNMLMA-LEIDREIP 81

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ +A+++  +Y
Sbjct: 82  PELYRTIAEVLAHVY 96


>gi|89098659|ref|ZP_01171541.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911]
 gi|89086621|gb|EAR65740.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911]
          Length = 99

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +   +AP + AKG+ L A+ + + A EHNIPI E+ SL   L  ++ I+  IP
Sbjct: 12  AVALSY-RDGQEAPKVKAKGKGLTAENILEKAKEHNIPIQEDASLVE-LLGKLNIDENIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA++   +Y
Sbjct: 70  EELYQAVAEIFAFVY 84


>gi|224373751|ref|YP_002608123.1| flagellar basal body protein FlhB [Nautilia profundicola AmH]
 gi|223589598|gb|ACM93334.1| flagellar basal body protein FlhB [Nautilia profundicola AmH]
          Length = 87

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E +AP ++AKG+  +A+K+ + A  +++P+F+  +LA  L   V +   IP
Sbjct: 4   AVALKYKAYEENAPKVLAKGKGELARKIIEKAKLYDVPLFQNETLADMLL-NVEVGEEIP 62

Query: 336 PVFYKAVAQLIYKIY 350
           P  YKAV  +   +Y
Sbjct: 63  PKMYKAVVDVFIWLY 77


>gi|227871678|ref|ZP_03990091.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus
           F0268]
 gi|227842477|gb|EEJ52694.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus
           F0268]
          Length = 111

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y   +N AP++VA G   +A+K+ + A +  +P++E+ SLA SL  Q+ + + IP
Sbjct: 12  AAALKYDNEKNGAPMIVAAGMGHMAEKITETAMKSGVPVYEDDSLA-SLLTQMKLGAEIP 70

Query: 336 PVFYKAVAQL 345
              ++A+ ++
Sbjct: 71  EELFQAIVEI 80


>gi|169831979|ref|YP_001717961.1| flagellar protein FhlB-like cytoplasmic domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638823|gb|ACA60329.1| flagellar protein FhlB-like cytoplasmic domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 117

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y    +  P +VA G+ L A ++ ++A    +P++ +P LA +L   + ++  IP
Sbjct: 19  AAALTYEDGPDAVPRVVAVGKGLFAARIEEVARASGVPVYRDPQLAWTL-AGLGLDREIP 77

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ VAQ+I  +Y+
Sbjct: 78  PELYQVVAQVIAWVYY 93


>gi|73538920|ref|YP_299287.1| putative flagellar protein [Ralstonia eutropha JMP134]
 gi|72122257|gb|AAZ64443.1| putative flagellar protein [Ralstonia eutropha JMP134]
          Length = 93

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y QT++ AP +VAKG  ++A+ +   A E  + +   P+L  +L  QV ++S IP
Sbjct: 11  AIALSY-QTDDKAPRVVAKGYGVVAEAIIARAREAGVYVHGSPTLV-NLLMQVDLDSHIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y A+A+L+  +Y 
Sbjct: 69  PQLYVAIAELLAWLYQ 84


>gi|330502794|ref|YP_004379663.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01]
 gi|328917080|gb|AEB57911.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01]
          Length = 113

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      APVL AKG + +A+ +  IA E+ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALNY--DGQSAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLI 346
              Y+ +A++I
Sbjct: 69  EALYRCIAEII 79


>gi|86749459|ref|YP_485955.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris HaA2]
 gi|86572487|gb|ABD07044.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris HaA2]
          Length = 89

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 5/81 (6%)

Query: 266 TIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           T+ I N    A+AL Y   +  AP +VAKG+  I  K+ ++A EHN+PI E   LA +L 
Sbjct: 2   TVSIKN--QIAVALYY--DKGGAPRVVAKGRGTIGAKIIEVAKEHNVPIEENEVLAGAL- 56

Query: 326 KQVPINSAIPPVFYKAVAQLI 346
             V +   IP   YKAVA+++
Sbjct: 57  SHVELGDEIPEELYKAVAEVL 77


>gi|311695179|gb|ADP98052.1| flagellar protein FhlB cytoplasmic domain protein [marine bacterium
           HP15]
          Length = 104

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +  AP + A G + +A+++ +IA EHN+P++E   LA S+  ++ +N  IP
Sbjct: 12  AVALKYDGEK--APTISATGTHELAEEIIRIAREHNVPLYENAELA-SILARLSLNEEIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ +A+++   +H
Sbjct: 69  ESLYRVIAEILAFAFH 84


>gi|312959804|ref|ZP_07774320.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
 gi|311285970|gb|EFQ64535.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
          Length = 109

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T  +  A+AL+Y      AP L AKG + +A+ + K+A E+ +PI+E   L + L  ++ 
Sbjct: 4   TESSRQAIALKY--DGQQAPTLTAKGDDALAEAILKLARENEVPIYENAELVK-LLARME 60

Query: 330 INSAIPPVFYKAVAQLI 346
           +  +IP   Y+ +A++I
Sbjct: 61  LGDSIPEELYRTIAEII 77


>gi|207093353|ref|ZP_03241140.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|207108746|ref|ZP_03242908.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 90

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N T  A AL Y   ++ AP ++A G   +AK++ + A E+NI +F  P L  SL K V +
Sbjct: 2   NKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYNIALFSNPMLVDSLLK-VEL 60

Query: 331 NSAIPPVFYKAVAQL 345
           + AIP   Y++V Q+
Sbjct: 61  DCAIPEELYESVVQV 75


>gi|237653555|ref|YP_002889869.1| flagellar related protein [Thauera sp. MZ1T]
 gi|237624802|gb|ACR01492.1| flagellar related protein [Thauera sp. MZ1T]
          Length = 114

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP +VAKG+ ++A+++ + A E  + + E P L  +L  QV +++ IP
Sbjct: 12  AVALAYTAGEA-APRVVAKGKGVVAREILERAREAGVFVHESPELV-ALLMQVDLDARIP 69

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 70  PQLYVAVAELLAWLY 84


>gi|167770250|ref|ZP_02442303.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM
           17241]
 gi|167667572|gb|EDS11702.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM
           17241]
          Length = 112

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ AP+++A G   +A+++  +A +  IP+F + S A SL   + + S IP
Sbjct: 9   AVALKYNAEEDVAPIVIASGYGELAQRIIDVAEKQGIPVFRDDS-AVSLMCMLEVGSNIP 67

Query: 336 PVFYKAVAQL 345
           P  Y+ VA +
Sbjct: 68  PELYQVVAAI 77


>gi|110632475|ref|YP_672683.1| type III secretion exporter [Mesorhizobium sp. BNC1]
 gi|110283459|gb|ABG61518.1| type III secretion exporter [Chelativorans sp. BNC1]
          Length = 339

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 134/330 (40%), Gaps = 30/330 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISR---EASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
             KTEAP+ +++E+   EG  P  +   EA+L + ++  LI+L    S  + ++++ +  
Sbjct: 3   GEKTEAPTPRRLEERRREGQVPQRKNIIEAALLTFVVVLLIWLFRPLSEALLNLSAAV-- 60

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH-- 122
                       ISH +   T  SL A+  V+  +L        S L   +    LN   
Sbjct: 61  ---------FSSISHDLEAATATSLVAAMPVVHWMLAICG---ASALFTLLLSCVLNKFM 108

Query: 123 -----VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                + P F+R +    IK I+S   L +FM+  V    V  I       N    L   
Sbjct: 109 FAPKALAPKFERFNPVGQIKSIFSKATLYSFMRMIVLFTAVSAIFIYLYVANMDNSLQ-A 167

Query: 178 SANPHSILYHAFFTVRKVLIM-ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           S    + LY  F +   +L+  +L  +  L ++D       + S+ KM+K+E+K E K  
Sbjct: 168 SHCGEACLYDLFTSRIGMLVAAVLGVLIVLALIDYKIQDRMFISQNKMTKEEVKREYKDQ 227

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+  IK  +KSIA +     ++  ++     + +      A+ +       P LV K  
Sbjct: 228 EGDREIKAGRKSIALNDAAAPLLSESTH----VVHSDQVLAAVIFYPGAGYPPYLVFKAM 283

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
                 + +     NIP F  P  A   ++
Sbjct: 284 GASVPGLCRKFLAMNIPTFNVPGAALEFYR 313


>gi|225174800|ref|ZP_03728798.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169927|gb|EEG78723.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 89

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y + ++DAP +VA+G   IA+++  +A EH +P+ +   LA +L    P    IP
Sbjct: 9   AVALQYQEEKDDAPRVVARGAGKIAEQILLLAQEHGVPVKQSKVLAETLSLVEP-GDEIP 67

Query: 336 PVFYKAVAQLIYKI 349
              Y AVAQ++ ++
Sbjct: 68  EGLYLAVAQIMSEV 81


>gi|291277367|ref|YP_003517139.1| putative flagellar biosynthesis protein flhB2 [Helicobacter
           mustelae 12198]
 gi|290964561|emb|CBG40414.1| putative flagellar biosynthesis protein flhB2 [Helicobacter
           mustelae 12198]
          Length = 89

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y   +N AP +VA G+  IA+++ + A E+++P+F   +L  SL   + I+S IP
Sbjct: 4   AAALAYAPYQNSAPKVVASGKGTIAEQIIQKAREYDVPLFSNTALVDSLIG-IEIDSQIP 62

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ V ++   + H
Sbjct: 63  PELYQGVVEVFIWLEH 78


>gi|292670874|ref|ZP_06604300.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541]
 gi|292647495|gb|EFF65467.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541]
          Length = 110

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + AP + AKG++L+A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 25  AVAIKYDVKNDQAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 83

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ +A+++  +Y
Sbjct: 84  PELYRTIAEVLAHVY 98


>gi|229589274|ref|YP_002871393.1| hypothetical protein PFLU1756 [Pseudomonas fluorescens SBW25]
 gi|229361140|emb|CAY48003.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 109

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL+Y      AP L A+G + +A+ + K+A E+ +PI+E   L + L  ++ + 
Sbjct: 6   PPRQAIALKY--DGQQAPTLTARGDDALAEAILKLARENEVPIYENAELVK-LLARMELG 62

Query: 332 SAIPPVFYKAVAQLI 346
            +IP   Y+ +A++I
Sbjct: 63  DSIPEELYRTIAEII 77


>gi|194292856|ref|YP_002008763.1| flagellar protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226760|emb|CAQ72711.1| putative flagellar protein [Cupriavidus taiwanensis LMG 19424]
          Length = 96

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q  + AP +VAKG  ++A+ +   A E  + + + P+L  +L  QV ++S IP
Sbjct: 11  AVALSY-QPSDKAPRIVAKGYGVVAEAIIARAKEAGVYVHDSPTLV-NLLMQVDLDSQIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y AVA+L+  +Y 
Sbjct: 69  PQLYVAVAELLAWLYQ 84


>gi|225569990|ref|ZP_03779015.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM
           15053]
 gi|225161460|gb|EEG74079.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM
           15053]
          Length = 117

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  +PV+VA G   +A+K+ + A +  +P++E+ SLA +L  Q+ + S IP
Sbjct: 12  AVALTYDEDKQASPVIVASGMGYLAEKIVETAEKSGVPVYEDNSLA-TLLTQLDLGSEIP 70

Query: 336 PVFYKAVAQL-IYKIYHK 352
              Y+A+  + IY + +K
Sbjct: 71  EELYQAIVDIYIYFLNYK 88


>gi|185177895|pdb|3BZV|B Chain B, Crystal Structural Of The Mutated T264a Escu C-Terminal
           Domain
          Length = 83

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P H A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +   
Sbjct: 1   PAHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|297530618|ref|YP_003671893.1| type III secretion exporter [Geobacillus sp. C56-T3]
 gi|297253870|gb|ADI27316.1| type III secretion exporter [Geobacillus sp. C56-T3]
          Length = 95

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP++ AKG   +A+ +   A +H +PI ++P+L   L  +V IN  IP
Sbjct: 8   AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINETIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+L   +Y 
Sbjct: 67  EELYALVAELFAFLYQ 82


>gi|295111515|emb|CBL28265.1| Flagellar biosynthesis pathway, component FlhB [Synergistetes
           bacterium SGP1]
          Length = 95

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y +   +AP + A+G+  IA+K+ + A E ++P+ E+ +L  +L   + +   IP
Sbjct: 9   AVALKYDRETMNAPTVTARGEGFIARKIVERALEADVPVLEDAALVSALL-SLELGEEIP 67

Query: 336 PVFYKAVAQLIYKIY 350
              Y  VA+++  +Y
Sbjct: 68  AELYTVVARVLTWVY 82


>gi|163856461|ref|YP_001630759.1| hypothetical protein Bpet2150 [Bordetella petrii DSM 12804]
 gi|163260189|emb|CAP42491.1| hypothetical protein predicted by Glimmer/Critica [Bordetella
           petrii]
          Length = 104

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  + AP +VAKG   IA  + + A EH + + E   L  SL  QV +++ IP
Sbjct: 16  AVALSYGE-HDTAPRVVAKGYGQIADTIVRTAREHGLYVHESRELV-SLLMQVDLDAHIP 73

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 74  PQLYAAVAELLAWLY 88


>gi|313896280|ref|ZP_07829833.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975079|gb|EFR40541.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 107

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+RY   ++ AP + AKG++ +A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 23  AVAVRYDVEKDRAPRVTAKGRSFVADRILAEAKKNGIPVYQNKSLVNMLMA-LEIDREIP 81

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ +A+++  +Y
Sbjct: 82  PELYRTIAEVLAHVY 96


>gi|45657435|ref|YP_001521.1| flagellar biosynthetic transmembrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600674|gb|AAS70158.1| flagellar biosynthetic transmembrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 87

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL++I  +++APV+ A     +   +R IA ++++P  + P LA SL  ++PI S IP
Sbjct: 3   SVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVPTVKNPILAESL-SELPIGSEIP 61

Query: 336 PVFYKAVAQL 345
              Y+AV  +
Sbjct: 62  ENLYRAVGAI 71


>gi|185177899|pdb|3BZY|B Chain B, Crystal Structure Of The Mutated Y316d Escu C-Terminal
           Domain
          Length = 83

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL K +   
Sbjct: 1   PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|149928166|ref|ZP_01916412.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
 gi|149823151|gb|EDM82389.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
          Length = 95

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y++  + AP +VAKGQ LIA+++ + A E  + + E   L  SL   V ++  IP
Sbjct: 10  AVALAYLE-HSGAPKVVAKGQGLIAEQIIQKAKESGVFVHESRELV-SLLMNVDLDQQIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+A+A+L+  +Y 
Sbjct: 68  PGLYQAIAELLAWVYQ 83


>gi|56419742|ref|YP_147060.1| hypothetical protein GK1207 [Geobacillus kaustophilus HTA426]
 gi|56379584|dbj|BAD75492.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 95

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP++ AKG   +A+ +   A +H +PI ++P+L   L  +V IN  IP
Sbjct: 8   AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINEMIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+L   +Y 
Sbjct: 67  EELYALVAELFAFLYQ 82


>gi|168698715|ref|ZP_02730992.1| FlhB domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 89

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++ AP +VAKG+   A+++  +A ++ +P+ E+P+L + L  ++ ++  IP
Sbjct: 9   AVALSYDPAKDRAPKVVAKGKGRTAEQILALARKNAVPVREDPTLVQVL-SRLKVDQEIP 67

Query: 336 PVFYKAVAQLI 346
           P  Y+AVA ++
Sbjct: 68  PEVYRAVALIL 78


>gi|196247653|ref|ZP_03146355.1| flagellar biosynthesis [Geobacillus sp. G11MC16]
 gi|196212437|gb|EDY07194.1| flagellar biosynthesis [Geobacillus sp. G11MC16]
          Length = 95

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++APV+ AKG   +A+ +  +A ++ + + ++PSL   L  +V IN AIP
Sbjct: 8   AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+L   +Y 
Sbjct: 67  EGLYALVAELFAFLYQ 82


>gi|291562062|emb|CBL40878.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [butyrate-producing bacterium SS3/4]
          Length = 103

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ APV+VA G   +A+K+ + A +  +P++E+ SLA +L  ++ + +A+P
Sbjct: 12  AVALQYSPEKDTAPVIVASGMGYMAEKITEAARKSGVPVYEDDSLA-TLLSRLQLGAAVP 70

Query: 336 PVFYKAVAQL 345
              Y+A+ ++
Sbjct: 71  EELYQAIIEI 80


>gi|312879569|ref|ZP_07739369.1| type III secretion exporter [Aminomonas paucivorans DSM 12260]
 gi|310782860|gb|EFQ23258.1| type III secretion exporter [Aminomonas paucivorans DSM 12260]
          Length = 94

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY +    APV+VA G+ ++A+++ +IA E  IP+ E+ +L  +L   + +   IP
Sbjct: 10  AAALRYEEGHESAPVVVASGKGVLAERIVEIAREAQIPVVEDAALVSAL-LALELGEEIP 68

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  +Y
Sbjct: 69  PELYQAVARVLVFVY 83


>gi|291288699|ref|YP_003505515.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885859|gb|ADD69559.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 90

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A A+RY +  +  P LVAKGQ LIA K+   A EH++ I E+  L  +L   + +   IP
Sbjct: 8   AAAIRYDKDIDKVPKLVAKGQGLIADKIIAKAKEHDVHITEDKDLVEAL-STLDLYEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              YK VA L+ ++Y
Sbjct: 67  EELYKVVAYLLAELY 81


>gi|209884850|ref|YP_002288707.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
 gi|209873046|gb|ACI92842.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
          Length = 91

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P    LA+        AP +VAKG+  IA+K+ ++A EH++ I E   LA +L   V 
Sbjct: 5   TTPIQNTLAVALHYDRKGAPRVVAKGKGEIARKIIEVAAEHDVAIEENEILAGAL-SNVE 63

Query: 330 INSAIPPVFYKAVAQLI 346
           I   IP   YKAVA+++
Sbjct: 64  IGDEIPAELYKAVAEVL 80


>gi|118587806|ref|ZP_01545216.1| flhB-related protein [Stappia aggregata IAM 12614]
 gi|118439428|gb|EAV46059.1| flhB-related protein [Stappia aggregata IAM 12614]
          Length = 94

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y      APV+ AKG   +A+++ ++A E  +PI + P +A +L  Q+ ++  IP
Sbjct: 12  AVALQY--ESEGAPVVTAKGTGSMAEQIERLAREAGVPIEQNPMMAEAL-SQIEVDQEIP 68

Query: 336 PVFYKAVAQLI 346
              Y+AVA LI
Sbjct: 69  IELYQAVAVLI 79


>gi|332284044|ref|YP_004415955.1| putative flagellar protein [Pusillimonas sp. T7-7]
 gi|330427997|gb|AEC19331.1| putative flagellar protein [Pusillimonas sp. T7-7]
          Length = 99

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y    + AP +VAKG   +A+ + + A EH + + E P L   L  QV +++ IP
Sbjct: 15  AVAVTY-DKHDAAPRVVAKGYGTVAENIIRSAKEHGLHVHESPELV-GLLMQVDLDAHIP 72

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y A+A+L+  +Y
Sbjct: 73  PELYLAIAELLAWLY 87


>gi|325982832|ref|YP_004295234.1| type III secretion exporter [Nitrosomonas sp. AL212]
 gi|325532351|gb|ADZ27072.1| type III secretion exporter [Nitrosomonas sp. AL212]
          Length = 109

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  ALA R  Q    AP ++AKG+ LIA+++ + A E NI + E   L  +L  QV ++ 
Sbjct: 9   TAVALAYREGQI---APKVIAKGRGLIAQEIIRRAKEANIYVHESSELV-ALLMQVNLDD 64

Query: 333 AIPPVFYKAVAQLIYKIYH 351
            IPP  Y AVA+L+  +Y 
Sbjct: 65  RIPPQLYVAVAELLAWLYR 83


>gi|138894728|ref|YP_001125181.1| flagellar biosynthesis protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266241|gb|ABO66436.1| Flagellar biosynthesis [Geobacillus thermodenitrificans NG80-2]
          Length = 98

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++APV+ AKG   +A+ +  +A ++ + + ++PSL   L  +V IN AIP
Sbjct: 11  AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+L   +Y 
Sbjct: 70  EGLYALVAELFAFLYQ 85


>gi|330960251|gb|EGH60511.1| FlhB domain-containing protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 107

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 269 ITNPTH---YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +T P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L 
Sbjct: 1   MTPPDHSPRQAIALSY--DGQSAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|320354269|ref|YP_004195608.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032]
 gi|320122771|gb|ADW18317.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032]
          Length = 102

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q +  AP ++A G NLIA+K+   A E  + I E+  L   L  ++P+   IP
Sbjct: 11  AVALLYDQDKGTAPKVIASGSNLIAEKIIATAMEAGVHIREDKDLVE-LLAKIPLGQEIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ +A+++  +Y
Sbjct: 70  VELYQTIAEVLAFVY 84


>gi|317051555|ref|YP_004112671.1| type III secretion exporter [Desulfurispirillum indicum S5]
 gi|316946639|gb|ADU66115.1| type III secretion exporter [Desulfurispirillum indicum S5]
          Length = 128

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y Q ++ AP++ AKGQ  +A+ +   A EH + I E+P L  +L   + I+  IP
Sbjct: 47  AVALKY-QDKSRAPLVSAKGQGHVAEAIIDKAREHGVAIHEDPDLVVAL-SALEIDQEIP 104

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA+++  +Y +
Sbjct: 105 EELYQAVAEVLAFLYKQ 121


>gi|115525542|ref|YP_782453.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
 gi|115519489|gb|ABJ07473.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
          Length = 88

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q    AP++VAKG+  I  K+ ++A  H++PI E   LA +L K V +   IP
Sbjct: 10  AIALHYDQL--GAPLVVAKGKGAIGAKIIEVAKAHDVPIEENEVLAGALSK-VELGEEIP 66

Query: 336 PVFYKAVAQLI 346
              YKAVA+++
Sbjct: 67  QELYKAVAEVL 77


>gi|185177901|pdb|3BZZ|B Chain B, Crystal Structural Of The Mutated R313t EscuSPAS C-
           Terminal Domain
          Length = 83

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LA SL+K +   
Sbjct: 1   PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLATSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|226944518|ref|YP_002799591.1| flagellar protein [Azotobacter vinelandii DJ]
 gi|226719445|gb|ACO78616.1| flagellar protein [Azotobacter vinelandii DJ]
          Length = 94

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ALAL Y + +  AP +VAKG   +A+++   A+   +P+   P L   L  QV +++ IP
Sbjct: 11  ALALSYAEGDA-APRVVAKGYGRLAERIVAEAHRQGVPVHAAPELV-GLLMQVDLDAQIP 68

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ VA+L+   Y
Sbjct: 69  PQLYQVVAELLVWAY 83


>gi|83589852|ref|YP_429861.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073]
 gi|83572766|gb|ABC19318.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073]
          Length = 94

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E+ AP +VA G+  IA K+   A E  +PI  +  LA  +   + + S IP
Sbjct: 10  AVALRYNSEEDKAPRVVASGRGAIADKIITAAREAGVPIHRDTHLAE-MLAGLDVGSEIP 68

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA+++  IY
Sbjct: 69  VELYQMVAEILVFIY 83


>gi|304436819|ref|ZP_07396785.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370191|gb|EFM23850.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 103

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + AP + AKG++L+A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 18  AVAIKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ +A+++  +Y
Sbjct: 77  PELYRTIAEVLAHVY 91


>gi|288940399|ref|YP_003442639.1| type III secretion exporter [Allochromatium vinosum DSM 180]
 gi|288895771|gb|ADC61607.1| type III secretion exporter [Allochromatium vinosum DSM 180]
          Length = 122

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL +      AP + A G  L A+++ KIA EH+IP+  +P L  +L  Q+P+ +
Sbjct: 10  TTKAVALHW--DREHAPRITATGTGLTAEQILKIAEEHDIPLRADPVLVEAL-AQIPLGA 66

Query: 333 AIPPVFYKAVAQLIYKIY 350
            IP   Y AVA+++  ++
Sbjct: 67  EIPRALYVAVAEVLAFVF 84


>gi|196249409|ref|ZP_03148107.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp.
           G11MC16]
 gi|196211166|gb|EDY05927.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp.
           G11MC16]
          Length = 98

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY +T   AP +VA+G   +A+K+ ++A +H++ I E+P L + L  Q+
Sbjct: 14  MNGPT--AAVIRYDETSGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDRIPPQLYAVIA 85


>gi|154250425|ref|YP_001411250.1| flagellar biosynthetic protein (FlhB)-like protein
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154361|gb|ABS61593.1| flagellar biosynthetic protein (FlhB)-like protein
           [Fervidobacterium nodosum Rt17-B1]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ AP +VAKG+  +A+ + K A E N+PI + P L   LF+ + I   IP
Sbjct: 18  AVALKYQMGKDFAPFVVAKGRCQLAEAIIKKAEESNVPIVKSPDLVEELFR-LDILEMIP 76

Query: 336 PVFYKAVAQLI 346
              Y AVA+++
Sbjct: 77  SKLYVAVAEVL 87


>gi|78224352|ref|YP_386099.1| FlhB domain-containing protein [Geobacter metallireducens GS-15]
 gi|78195607|gb|ABB33374.1| FlhB domain protein, putative [Geobacter metallireducens GS-15]
          Length = 94

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  AP +VAKG  + A+ +   A E  + + E P+L   L  QV I+  IP
Sbjct: 10  AVALSYREGQY-APQVVAKGHGVTAEAIIACAREAGVFVHESPALVSQLM-QVDIDHYIP 67

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+L+  +Y
Sbjct: 68  PELYRAVAELLAWLY 82


>gi|39936268|ref|NP_948544.1| Type III secretion proteins related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris CGA009]
 gi|39650123|emb|CAE28646.1| Type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris CGA009]
          Length = 91

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           + T  T  ALA+        AP +VAKG+ ++  K+ ++A +H+IPI E   LA +L   
Sbjct: 1   MTTTDTKNALAIALHYDYAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SH 59

Query: 328 VPINSAIPPVFYKAVAQLI 346
           V +   IP   YKAVA+++
Sbjct: 60  VELGDEIPEELYKAVAEVL 78


>gi|289208366|ref|YP_003460432.1| type III secretion exporter [Thioalkalivibrio sp. K90mix]
 gi|288943997|gb|ADC71696.1| type III secretion exporter [Thioalkalivibrio sp. K90mix]
          Length = 119

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL + +    AP + A G  + A+++ +IA EH IP+ ++P L  +L  QVP+   +P
Sbjct: 25  AVALEWDR--QRAPRITASGSGVTAEQILRIAEEHGIPLHQDPGLTEAL-AQVPLGEEVP 81

Query: 336 PVFYKAVAQLIYKIY 350
              Y AVA+++  I+
Sbjct: 82  ESLYVAVAEVLAFIF 96


>gi|185177914|pdb|3C03|C Chain C, Crystal Structure Of The Escu C-Terminal Domain With P263a
           Mutation,Space Group P 1 21 1
          Length = 83

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 44/74 (59%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +    
Sbjct: 2   THIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQ 61

Query: 333 AIPPVFYKAVAQLI 346
            I   F++ VAQLI
Sbjct: 62  YITEDFFEPVAQLI 75


>gi|89094428|ref|ZP_01167368.1| probable flagellar biosynthesis-related protein [Oceanospirillum
           sp. MED92]
 gi|89081320|gb|EAR60552.1| probable flagellar biosynthesis-related protein [Oceanospirillum
           sp. MED92]
          Length = 109

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y Q    AP++VAKG   IA+++  +A E+ I I E P L   L + + +   IP
Sbjct: 15  AIALKYDQELGKAPLIVAKGMGEIAEQIINLAEENGIHIHESPELVEVLIR-LELGDEIP 73

Query: 336 PVFYKAVAQLI---YKIYHKK 353
              Y+A+A++I   Y + H +
Sbjct: 74  ESLYRAIAEVIAFAYSLKHSQ 94


>gi|49089132|gb|AAT51646.1| PA1473 [synthetic construct]
          Length = 112

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|116049416|ref|YP_791781.1| FlhB domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390161|ref|ZP_06879636.1| FlhB domain-containing protein [Pseudomonas aeruginosa PAb1]
 gi|115584637|gb|ABJ10652.1| putative FlhB domain protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 111

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|15596670|ref|NP_250164.1| hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]
 gi|107100906|ref|ZP_01364824.1| hypothetical protein PaerPA_01001936 [Pseudomonas aeruginosa PACS2]
 gi|218892654|ref|YP_002441523.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58]
 gi|254234571|ref|ZP_04927894.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719]
 gi|254239822|ref|ZP_04933144.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192]
 gi|313106471|ref|ZP_07792702.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|9947426|gb|AAG04862.1|AE004576_11 hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]
 gi|126166502|gb|EAZ52013.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719]
 gi|126193200|gb|EAZ57263.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192]
 gi|218772882|emb|CAW28694.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58]
 gi|310879204|gb|EFQ37798.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 111

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|238926781|ref|ZP_04658541.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
 gi|238885313|gb|EEQ48951.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
          Length = 103

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + AP + AKG++L+A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 18  AVAVKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ +A+++  +Y
Sbjct: 77  PELYRTIAEVLAHVY 91


>gi|283954420|ref|ZP_06371940.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283794037|gb|EFC32786.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 93

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A E+ +PI E+  L   L K + +   IP
Sbjct: 11  AVALGYQREKNSAPKVLASGKGESAAKIISLAKEYGVPIKEDEDLIEILSK-LDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   IY 
Sbjct: 70  PNMYKAVAEVFAFIYQ 85


>gi|92114151|ref|YP_574079.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91797241|gb|ABE59380.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 101

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q  + APV+VAKG   +A+++ + A    I + + P L  +L  QV +++ IP
Sbjct: 11  AVALAY-QDASAAPVVVAKGYGELAERIVEKAKHEGIFVHDAPELV-ALLMQVDMDAEIP 68

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ +A+L+  +Y
Sbjct: 69  PTLYQVIAELLAWVY 83


>gi|26991019|ref|NP_746444.1| FlhB domain-containing protein [Pseudomonas putida KT2440]
 gi|24986048|gb|AAN69908.1|AE016629_10 FlhB domain protein [Pseudomonas putida KT2440]
          Length = 112

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+AL Y    + AP L AKG   +A+ +  +A EH +PI+E   L R L  ++ 
Sbjct: 4   TTPRQ-AIALNY--DGHQAPTLTAKGDEDLAEAILALAREHEVPIYENAELVR-LLARLE 59

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
           +   IP   Y  +A++I   +H
Sbjct: 60  LGEQIPEALYLTIAEIIAFAWH 81


>gi|239817130|ref|YP_002946040.1| flagellar biosynthesis protein [Variovorax paradoxus S110]
 gi|239803707|gb|ACS20774.1| flagellar biosynthesis protein [Variovorax paradoxus S110]
          Length = 97

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL +  T   APV+VAKG  + A+ + + A E+ + +   P L R L  QV ++
Sbjct: 7   PRQSAVALSHADTAK-APVVVAKGYGVTAESILRQARENGVYVHASPDLIR-LLMQVDLD 64

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IPP  Y AVA+++  I+
Sbjct: 65  RQIPPQLYLAVAEVMAWIH 83


>gi|118581817|ref|YP_903067.1| FlhB domain-containing protein [Pelobacter propionicus DSM 2379]
 gi|118504527|gb|ABL01010.1| FlhB domain protein [Pelobacter propionicus DSM 2379]
          Length = 108

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 269 ITNP---THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +TNP      A A+ Y Q    APV+VA+G+ ++A+ +   A E  + I E P L + L 
Sbjct: 1   MTNPDSDERKAAAISYKQGYY-APVVVARGKGVMAEAIIACAREAGVYIHESPELVQ-LL 58

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIY 350
            QV  +  IPP  Y+AVA+++  +Y
Sbjct: 59  MQVDTDQFIPPELYRAVAEVLVWLY 83


>gi|239828347|ref|YP_002950971.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
 gi|239808640|gb|ACS25705.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
          Length = 98

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           I  PT  A  +RY +    +P +VA+G   +A+K+ ++A +HN+ I E+P L ++L   +
Sbjct: 14  INGPT--AAVIRYDEETGKSPTVVAQGTGYVAQKIIELAKQHNVHIQEDPLLVQNLLN-L 70

Query: 329 PINSAIPPVFYKAVA 343
            +  +IPP  Y  +A
Sbjct: 71  DLGDSIPPQLYAVIA 85


>gi|313497828|gb|ADR59194.1| Flagellar protein FhlB-like protein [Pseudomonas putida BIRD-1]
          Length = 112

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+AL Y    + AP L AKG   +A+ +  +A EH +PI+E   L R L  ++ 
Sbjct: 4   TTPRQ-AIALNY--DGHQAPTLTAKGDEELAEAILALAREHEVPIYENAELVR-LLARLE 59

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
           +   IP   Y  +A++I   +H
Sbjct: 60  LGDQIPEALYLTIAEIIAFAWH 81


>gi|78485097|ref|YP_391022.1| flagellar protein FhlB-like protein [Thiomicrospira crunogena
           XCL-2]
 gi|78363383|gb|ABB41348.1| FlhB domain protein [Thiomicrospira crunogena XCL-2]
          Length = 104

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI- 346
           AP + AKG   +A+++ K+A E+NIPI E+  L + L  QV ++  IP + Y+AV Q++ 
Sbjct: 25  APKVTAKGSGTLAEQIIKVAKENNIPITEDHDLVQ-LLAQVELDQEIPELLYEAVVQVLI 83

Query: 347 --YKIYHKKI 354
             Y++  K+I
Sbjct: 84  FAYQLSEKEI 93


>gi|186477673|ref|YP_001859143.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
 gi|184194132|gb|ACC72097.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
          Length = 112

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           ++AP +VAKG  L+A  + + A E  + + E P +  SL  QV ++S IPP  Y+AVA+L
Sbjct: 20  DEAPRVVAKGYGLVADMIVQRAKEAGLYVHESPDMV-SLLMQVDLDSRIPPRLYQAVAEL 78

Query: 346 I 346
           +
Sbjct: 79  L 79


>gi|229824938|ref|ZP_04451007.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC
           49176]
 gi|229790941|gb|EEP27055.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC
           49176]
          Length = 97

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +AP ++A G+  +A+K+   + +++IP +E+  L +SL  Q+ I   IP
Sbjct: 10  AVALGYDTESGEAPYVIAAGKGALAEKIISESKKNDIPQYEDEKLVKSL-SQLEIGENIP 68

Query: 336 PVFYKAVAQLI 346
           P  Y+ VAQ++
Sbjct: 69  PELYEVVAQVL 79


>gi|160939648|ref|ZP_02086996.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437439|gb|EDP15203.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC
           BAA-613]
          Length = 130

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E+ +PV++A G   +A+ +  IA +  IP+F++ S A SL   + + S IP
Sbjct: 9   AVALRYNVDEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGSNIP 67

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VA +  K+
Sbjct: 68  VELYEVVAAIYCKL 81


>gi|91776332|ref|YP_546088.1| putative flagellar biosynthetic protein [Methylobacillus
           flagellatus KT]
 gi|91710319|gb|ABE50247.1| putative flagellar biosynthetic protein [Methylobacillus
           flagellatus KT]
          Length = 102

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y ++ + AP +VAKG+ +IA+++   A EH + + E   L  +L  QV ++  IP
Sbjct: 10  AIALAY-ESGDFAPRVVAKGRGVIAEQIIAKAKEHGVFVHESRELL-ALLMQVDLDDHIP 67

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+A+A+++  +Y
Sbjct: 68  PALYQAIAEILAWLY 82


>gi|92117130|ref|YP_576859.1| type III secretion protein [Nitrobacter hamburgensis X14]
 gi|91800024|gb|ABE62399.1| type III secretion protein [Nitrobacter hamburgensis X14]
          Length = 89

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG+  +  K+ ++A EH+IPI E   LA +L   V +   IP
Sbjct: 10  AVALHY-DKGSGAPRVVAKGRGSLGAKIIEVAREHDIPIEENEVLAGAL-SHVELGDEIP 67

Query: 336 PVFYKAVAQLI 346
              YKAVA+++
Sbjct: 68  SELYKAVAEVL 78


>gi|302878303|ref|YP_003846867.1| type III secretion exporter [Gallionella capsiferriformans ES-2]
 gi|302581092|gb|ADL55103.1| type III secretion exporter [Gallionella capsiferriformans ES-2]
          Length = 97

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A+AL Y QT   AP +VA+G+ LIA+ + + A ++ + + E   L   L  QV +
Sbjct: 4   NSQQAAVALAYGQTSG-APKVVARGRGLIAQAIIERAKQNGVYVHESADLV-GLLMQVEL 61

Query: 331 NSAIPPVFYKAVAQL---IYKIYHKK 353
           +  IPP  Y AVA+L   +Y++ H++
Sbjct: 62  DEQIPPQLYLAVAELLAWLYRLEHEE 87


>gi|185177897|pdb|3BZX|B Chain B, Crystal Structure Of The Mutated H265a Escu C-Terminal
           Domain
          Length = 83

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PT  A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +   
Sbjct: 1   PTAIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|77457802|ref|YP_347307.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf0-1]
 gi|77381805|gb|ABA73318.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 112

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T     A+AL+Y    N AP L AKG   +A+++ +IA +  +PI+E   L + L  ++ 
Sbjct: 4   TTAPRQAIALKY--DGNHAPTLTAKGDEELAEEILRIARDCEVPIYENAELVK-LLARME 60

Query: 330 INSAIPPVFYKAVAQLI 346
           +  +IP   Y+ +A++I
Sbjct: 61  LGDSIPEELYRTIAEII 77


>gi|323152630|gb|EFZ38906.1| flagellar biosynthetic flhB domain protein [Escherichia coli
           EPECa14]
          Length = 169

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 35/175 (20%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-------- 55
           +D  D+KTEAP+  ++E A  EG  P SRE    +S+L  L+ +   +  G+        
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 56  ---------YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
                    +S+ +D +++L        E +  ++ L++ + L A  L+ P     M+ G
Sbjct: 59  MLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVA--LISP----VMLGG 112

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI 161
           +         V +   ++P F +++   GIKR++S       +K+ +K ILVG++
Sbjct: 113 L---------VFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSV 158


>gi|28870794|ref|NP_793413.1| FlhB domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968921|ref|ZP_03397061.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301385357|ref|ZP_07233775.1| FlhB domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061231|ref|ZP_07252772.1| FlhB domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302133130|ref|ZP_07259120.1| FlhB domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28854043|gb|AAO57108.1| FlhB domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926220|gb|EEB59775.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1]
 gi|330879117|gb|EGH13266.1| FlhB domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967862|gb|EGH68122.1| FlhB domain-containing protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331015905|gb|EGH95961.1| FlhB domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 107

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +T P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L 
Sbjct: 1   MTLPDHVPRQAIALSY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|88812111|ref|ZP_01127363.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Nitrococcus mobilis Nb-231]
 gi|88790615|gb|EAR21730.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Nitrococcus mobilis Nb-231]
          Length = 113

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I +    A+AL Y  T + AP + A+G   +A+++ ++A  H+IP++    L + L  Q
Sbjct: 12  MIEHDRRLAVALEY--TGHGAPRVTAQGHGALAEEIIRLAQAHDIPLYPNRDLVQVL-AQ 68

Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350
           + ++  IP + Y AVA+LI   Y
Sbjct: 69  IELDQEIPELLYHAVAELIAFAY 91


>gi|330808246|ref|YP_004352708.1| FlhB domain-containing protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376354|gb|AEA67704.1| Conserved hypothetical protein, FlhB domain-containing protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 109

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + AP L AKG   +A+++ +IA E  +PI+E   L + L  ++ +  +IP
Sbjct: 10  AIALKY--DGHHAPTLTAKGDEALAEEILRIARESEVPIYENAELVK-LLARMELGDSIP 66

Query: 336 PVFYKAVAQLI 346
              Y+ +A++I
Sbjct: 67  EELYRTIAEII 77


>gi|224826964|ref|ZP_03700062.1| putative flagellar biosynthesis-related protein [Lutiella
           nitroferrum 2002]
 gi|224600797|gb|EEG06982.1| putative flagellar biosynthesis-related protein [Lutiella
           nitroferrum 2002]
          Length = 110

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q    AP +VAKG   +A+++ + A E  + + + P+L  SL  QV ++  IP
Sbjct: 13  AIALSY-QDGARAPKVVAKGYGELAERIIERAQEAGVFVHDSPALV-SLLMQVDLDQQIP 70

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  +Y
Sbjct: 71  PELYRAVAEVLAFVY 85


>gi|300311379|ref|YP_003775471.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
 gi|300074164|gb|ADJ63563.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y      AP +VAKG+ L+A+ +   A E  + + E   L  SL  QV ++
Sbjct: 7   PLQNAVALAY-NASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELV-SLLMQVELD 64

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IPP  Y+ VA+L+  +Y
Sbjct: 65  QQIPPALYRTVAELLAWLY 83


>gi|325271963|ref|ZP_08138414.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51]
 gi|324102911|gb|EGC00307.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51]
          Length = 117

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + IA+ +  +A EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALSY--DGQQAPSLTAKGDDSIAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65

Query: 336 PVFYKAVAQLI 346
              Y  +A++I
Sbjct: 66  EALYLTIAEII 76


>gi|91977593|ref|YP_570252.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris BisB5]
 gi|91684049|gb|ABE40351.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris BisB5]
          Length = 88

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +    AP +VAKG+  I  K+ ++A +H+IPI E   LA +L   V +   IP
Sbjct: 10  AVALHYDRA--GAPRVVAKGKGTIGAKIIEVAKQHDIPIEENEVLAGAL-SHVELGEEIP 66

Query: 336 PVFYKAVAQLI 346
              YKAVA+++
Sbjct: 67  EELYKAVAEVL 77


>gi|289805082|ref|ZP_06535711.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 23/235 (9%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P+ KK+ D   EG    S E +    ++A  +Y  FF        T  + ++L 
Sbjct: 2   SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF--------TEKMILILI 53

Query: 68  SATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFG-----IGSYLIQRIPVLNLN 121
            +    L+ ++    + LT LS  A    +   LLF+  G     +GS  +Q   V+   
Sbjct: 54  ESITFTLQLVNKPFSYALTQLS-HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASK 112

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +    + ++     K+I+S++++V   KS +K+I++  I        Y+    F  A P
Sbjct: 113 AIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFF---YYYASTF-RALP 168

Query: 182 HSILYHAFFTVRKVL----IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +  L      V  ++    + ++ F   + +LD  + Y++    LKMSK ++K E
Sbjct: 169 YCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQE 223


>gi|299135221|ref|ZP_07028412.1| type III secretion exporter [Afipia sp. 1NLS2]
 gi|298590198|gb|EFI50402.1| type III secretion exporter [Afipia sp. 1NLS2]
          Length = 91

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP +VAKG+  IAKK+ ++A EH++ I E   LA +L   V I   IP
Sbjct: 13  AVALHY--DRKGAPRVVAKGKGEIAKKIIEVASEHDVAIQENEVLAGAL-SNVEIGDEIP 69

Query: 336 PVFYKAVAQLI 346
              Y+AVA+++
Sbjct: 70  AELYRAVAEVL 80


>gi|222055862|ref|YP_002538224.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32]
 gi|221565151|gb|ACM21123.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32]
          Length = 106

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A+AL Y    + AP +VAKG  + A+ +  +A E+ + + E P L   L K V  
Sbjct: 6   NDLKKAVALAYNPAGDYAPRVVAKGCGVTAEAIIALARENGVYVHESPDLVNLLLK-VDQ 64

Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
           +  IPP  Y+AVA+L+  +Y 
Sbjct: 65  DRYIPPELYRAVAELLAWLYQ 85


>gi|320536637|ref|ZP_08036655.1| FlhB domain protein [Treponema phagedenis F0421]
 gi|320146513|gb|EFW38111.1| FlhB domain protein [Treponema phagedenis F0421]
          Length = 104

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + AP++VAKG+  IA+K+ +IA +H++PI ++  LA  L +Q  I + IP   Y+AVA +
Sbjct: 18  SSAPIIVAKGKGQIAEKILEIADKHSVPIIQDTILAEILSEQ-QIGACIPDETYQAVAAI 76


>gi|302188650|ref|ZP_07265323.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
           642]
          Length = 107

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 269 ITNPTH---YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +T P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L 
Sbjct: 1   MTLPDHTPRQAIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|222100070|ref|YP_002534638.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM
           4359]
 gi|221572460|gb|ACM23272.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM
           4359]
          Length = 80

 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T+    A+ALRY  +  +AP +VAKG   +A+K+ +IA  + IPI E P L   L + + 
Sbjct: 3   TDDIRKAVALRYDPSSMNAPEVVAKGAGEVAEKIIEIAKRYGIPIEERPDLVDDLLR-LE 61

Query: 330 INSAIPPVFYKAVAQ 344
           + S IP   Y  +A+
Sbjct: 62  LFSEIPEEMYLVIAE 76


>gi|192291990|ref|YP_001992595.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
 gi|316933568|ref|YP_004108550.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
 gi|192285739|gb|ACF02120.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
 gi|315601282|gb|ADU43817.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
          Length = 91

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NP   AL   Y      AP +VAKG+ ++  K+ ++A +H+IPI E   LA +L   V +
Sbjct: 8   NPLAIALHYDYA----GAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SHVEL 62

Query: 331 NSAIPPVFYKAVAQLI 346
              IP   YKAVA+++
Sbjct: 63  GDEIPEELYKAVAEVL 78


>gi|152985566|ref|YP_001349208.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           aeruginosa PA7]
 gi|150960724|gb|ABR82749.1| flagellar biosynthetic FlhB domain protein [Pseudomonas aeruginosa
           PA7]
          Length = 111

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSY--DGQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|146282896|ref|YP_001173049.1| FlhB domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145571101|gb|ABP80207.1| FlhB domain protein [Pseudomonas stutzeri A1501]
 gi|327481236|gb|AEA84546.1| FlhB domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 110

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +AP L AKG + +A+ +  IA EH +PI+E   L + L  ++ +   IP
Sbjct: 9   AIALSYDGV--NAPSLSAKGDDELAEAILAIAREHEVPIYENADLVK-LLARLELGDEIP 65

Query: 336 PVFYKAVAQLI 346
              Y+ +A++I
Sbjct: 66  EALYRTIAEII 76


>gi|71388156|gb|AAZ31290.1| EpaS1 [Escherichia coli]
          Length = 155

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            ++   G+KRI+ +  +  F+K+ + IIL
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143


>gi|209522461|ref|ZP_03271060.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
 gi|209497100|gb|EDZ97356.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
          Length = 114

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AP +VAKG  LIA+ + + A E  + + E P +  SL  QV +++ IPP  Y+AVA+L+
Sbjct: 22  APRVVAKGYGLIAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARIPPQLYQAVAELL 79


>gi|138896706|ref|YP_001127159.1| flagellar biosynthesis, FlhS-like protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268219|gb|ABO68414.1| Flagellar biosynthesis, FlhS-related protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 98

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY +    AP +VA+G   +A+K+ ++A +H++ I E+P L + L  Q+
Sbjct: 14  MNGPT--AAVIRYNEASGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDCIPPQLYAVIA 85


>gi|209963527|ref|YP_002296442.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
           centenum SW]
 gi|209956993|gb|ACI97629.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
           centenum SW]
          Length = 109

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y Q  +  P +VA G+  +A+++  +A+ H +P+ E+  LAR L    P  + IP
Sbjct: 13  AAALTYEQGSDALPRVVASGRGAVAERIVDLAFLHGVPVREDADLARVLAAIDP-GTEIP 71

Query: 336 PVFYKAVAQLIYKIY 350
           P    AVA+++  +Y
Sbjct: 72  PDAIMAVAEVLAHLY 86


>gi|85715097|ref|ZP_01046081.1| type III secretion protein [Nitrobacter sp. Nb-311A]
 gi|85698012|gb|EAQ35885.1| type III secretion protein [Nitrobacter sp. Nb-311A]
          Length = 89

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG   +  K+ ++A EH+IPI E   LA +L   V +   IP
Sbjct: 10  AVALHY-DKGSGAPRVVAKGSGSLGAKIIEVAKEHDIPIEENEVLAGAL-SHVELGDEIP 67

Query: 336 PVFYKAVAQLI 346
              YKAVA+++
Sbjct: 68  AELYKAVAEVL 78


>gi|291280386|ref|YP_003497221.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans
           SSM1]
 gi|290755088|dbj|BAI81465.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans
           SSM1]
          Length = 90

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y   ++ AP LVAKGQ LIA+K+ + A EH + I E+P +   +   + +   IP   Y+
Sbjct: 12  YDANKDKAPKLVAKGQGLIAEKIIEKAKEHGVFIKEDPDIVE-ILSTLDLFEEIPDKLYQ 70

Query: 341 AVAQLIYKIY 350
           A+A ++ ++Y
Sbjct: 71  AIANILVEVY 80


>gi|71733987|ref|YP_275475.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|289626814|ref|ZP_06459768.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646515|ref|ZP_06477858.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298487768|ref|ZP_07005809.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|71554540|gb|AAZ33751.1| flagellar biosynthetic FlhB domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157860|gb|EFH98939.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320323986|gb|EFW80070.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320328122|gb|EFW84127.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330869033|gb|EGH03742.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330876079|gb|EGH10228.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330883294|gb|EGH17443.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 107

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALSY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|312878031|ref|ZP_07737969.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795183|gb|EFR11574.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 94

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + E+ AP +VAKG+  +A+K+ + A + +IP++E+ S+A  LF  + +   IP   Y+ V
Sbjct: 15  ELEDIAPKIVAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVV 73

Query: 343 AQ-LIYKIYHKKI 354
           AQ L++  Y  KI
Sbjct: 74  AQILVFIGYLDKI 86


>gi|39995477|ref|NP_951428.1| FlhB domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39982240|gb|AAR33701.1| FlhB domain protein, putative [Geobacter sulfurreducens PCA]
 gi|298504477|gb|ADI83200.1| FlhB cytoplasmic domain-related protein [Geobacter sulfurreducens
           KN400]
          Length = 90

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  + AP +VAKG  + A+ +   A E  + + + P L R L  QV I+S IP
Sbjct: 10  AVALSY-REGHYAPQVVAKGYGVTAEAIIACAREAGVYVHQSPELVRQLI-QVDIDSCIP 67

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+L+  +Y
Sbjct: 68  ADLYRAVAELLAWLY 82


>gi|114330763|ref|YP_746985.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas
           eutropha C91]
 gi|114307777|gb|ABI59020.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas
           eutropha C91]
          Length = 113

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y  +   AP +VAKGQ LIA+++ + A E  + + E   L  +L  QV ++  IP
Sbjct: 30  AVALTY-HSGMTAPQVVAKGQGLIAEEIIRRAQEAGVYVHESAELV-ALLMQVDLDEHIP 87

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y A+A+L+  +Y 
Sbjct: 88  PELYVAIAELLAWLYQ 103


>gi|237799335|ref|ZP_04587796.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022191|gb|EGI02248.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 107

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALTY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|75675592|ref|YP_318013.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Nitrobacter winogradskyi Nb-255]
 gi|74420462|gb|ABA04661.1| type III secretion protein, related to flagellar biosynthesis
           protein FlhB [Nitrobacter winogradskyi Nb-255]
          Length = 89

 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG+  +  K+ ++A EH+IPI +   LA +L   V +   IP
Sbjct: 10  AVALHY-DKGSGAPRVVAKGRGSLGAKIIEVANEHDIPIEQNEVLADAL-SHVELGDEIP 67

Query: 336 PVFYKAVAQLI 346
              YKAVA+++
Sbjct: 68  AELYKAVAEVL 78


>gi|239628974|ref|ZP_04672005.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519120|gb|EEQ58986.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 127

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ +PV++A G   +A+ +  IA +  IP+F++ S A SL   + +   IP
Sbjct: 9   AVALKYNADEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGCNIP 67

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VA +  K+
Sbjct: 68  VELYEVVAGIYCKL 81


>gi|144900470|emb|CAM77334.1| Type III secretion exporter [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 122

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   + DAP + A G+  +A+++ ++A+ + + +  +P LA+ +   V +++ IP
Sbjct: 31  AVALQYDPDQADAPTVTASGKGAVAEQILQLAFANGVKVRTDPDLAQ-VLAAVEVDTVIP 89

Query: 336 PVFYKAVAQLIYKIYH 351
              + AVA+++  +Y 
Sbjct: 90  LEAFAAVAEILAYVYR 105


>gi|323183412|gb|EFZ68809.1| surface presentation of antigens protein spaS [Escherichia coli
           1357]
          Length = 190

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            ++   G+KRI+ +  +  F+K+ + IIL
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143


>gi|146297151|ref|YP_001180922.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410727|gb|ABP67731.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 94

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   +  AP ++AKGQ L+A+++ + A E NIPI+ +  +A  LF  + +   IP
Sbjct: 9   AVAIKY-DIKEIAPKVIAKGQGLVAERILEKAKEKNIPIYHDQYIAERLF-NLELQQYIP 66

Query: 336 PVFYKAVAQLI 346
              Y+ VAQ++
Sbjct: 67  EDLYEVVAQIL 77


>gi|330976060|gb|EGH76126.1| FlhB domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 107

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ALAL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  ALALSY--DGQHAPTLSAKGDDQLAEAILAIAPEYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|330888994|gb|EGH21655.1| FlhB domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 107

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALSY--GGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|148546777|ref|YP_001266879.1| flagellar protein FhlB-like protein [Pseudomonas putida F1]
 gi|148510835|gb|ABQ77695.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Pseudomonas putida F1]
          Length = 112

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+AL Y    + AP L AKG   +A+ +  +A EH +PI+E   L R L  ++ 
Sbjct: 4   TTPRQ-AIALNY--DGHQAPTLTAKGDEDLAEAILALAREHEVPIYENADLVR-LLARLE 59

Query: 330 INSAIPPVFYKAVAQLI 346
           +   IP   Y  +A++I
Sbjct: 60  LGDQIPEALYLTIAEII 76


>gi|315256731|gb|EFU36699.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 85-1]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            ++   G+KRI+ +  +  F+K+ + IIL
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143


>gi|300906602|ref|ZP_07124293.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 84-1]
 gi|300401641|gb|EFJ85179.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 84-1]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            ++   G+KRI+ +  +  F+K+ + IIL
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIL 143


>gi|158321501|ref|YP_001514008.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs]
 gi|158141700|gb|ABW20012.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs]
          Length = 98

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + APV+ A G  ++A K+ +   E+ + I+E+  L + L  Q  + + IP
Sbjct: 10  AVAIKYDVENDRAPVITASGMGVVADKIIEKGMENEVAIYEDERLVKELI-QFKVGTEIP 68

Query: 336 PVFYKAVAQLI 346
           P  Y+ VAQ++
Sbjct: 69  PELYEIVAQVL 79


>gi|257484836|ref|ZP_05638877.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330986556|gb|EGH84659.1| FlhB domain-containing protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011126|gb|EGH91182.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 107

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALSY--DGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|104782789|ref|YP_609287.1| hypothetical protein PSEEN3784 [Pseudomonas entomophila L48]
 gi|95111776|emb|CAK16500.1| conserved hypothetical protein; FlhB domain protein [Pseudomonas
           entomophila L48]
          Length = 114

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALSY--DGQQAPTLSAKGDDELAEAILAIAREHEVPIYENAELVR-LLARLELGEQIP 65

Query: 336 PVFYKAVAQLI 346
              Y  +A++I
Sbjct: 66  EALYLTIAEII 76


>gi|187919907|ref|YP_001888938.1| putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like protein [Burkholderia phytofirmans
           PsJN]
 gi|187718345|gb|ACD19568.1| putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like protein [Burkholderia phytofirmans
           PsJN]
          Length = 246

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 61/276 (22%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTEAP+  ++  A  +G+   S   S+  S L  L++LL   +P +Y V   +HV+   
Sbjct: 3   DKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFLLMD-APHVYQVC--VHVV-EV 58

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI------QRIPVLNLNH 122
           ATQ        + +L    +  A+   +P  +L    G+G+  +      Q   V  +  
Sbjct: 59  ATQIDQGQPFAVRYLQITRAFGAA---MP--ILLATLGVGALAVVVPEVAQAGGVFAVKR 113

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
             P FKR++   G+K ++ +  L++       I+L+            F +L F+     
Sbjct: 114 ALPDFKRLNPVTGLKNLFGLKTLID-----TGIVLM-----------QFCILVFV----- 152

Query: 183 SILYHAFFTVRKVLI--MILLFIATLTV---------------------LDIGWSYHQWY 219
             L+HAF T    L+    L F   L+V                     +D      QW 
Sbjct: 153 --LWHAFATWCAQLLPAFALAFGGQLSVTAQSLAQLQGLMAASQLAPAAIDFWLQRLQWR 210

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
            +L+M K EIK E +   G+P +K R++++ R   R
Sbjct: 211 RRLRMDKNEIKREHRDEDGDPHVKGRRRALHRELSR 246


>gi|34499326|ref|NP_903541.1| flagellar biosynthesis-like protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105177|gb|AAQ61533.1| probable flagellar biosynthesis-related protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 112

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  +P +VAKG   +A+++   A +  + + + P L  SL  QV ++  IP
Sbjct: 13  AVALSYKEGQR-SPRVVAKGYGQMAQRIIDCAQDAGVFVHDSPELV-SLLMQVDLDKHIP 70

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+AVA+++  IY+
Sbjct: 71  PELYRAVAEILAFIYY 86


>gi|66046624|ref|YP_236465.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257331|gb|AAY38427.1| FlhB domain protein [Pseudomonas syringae pv. syringae B728a]
 gi|330953816|gb|EGH54076.1| FlhB domain-containing protein [Pseudomonas syringae Cit 7]
 gi|330972504|gb|EGH72570.1| FlhB domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 107

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|222823585|ref|YP_002575159.1| flagellar biosynthesis protein [Campylobacter lari RM2100]
 gi|222538807|gb|ACM63908.1| conserved hypothetical protein, possible flagellar biosynthesis
           protein [Campylobacter lari RM2100]
          Length = 96

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y + + +AP ++A  +   A K+  +A E+ IPI E+  L   L K + +  
Sbjct: 5   TKKAVALGYNKEDQNAPKILANAKGENAAKIISLAKENGIPIKEDKDLVEVLSK-LDLGD 63

Query: 333 AIPPVFYKAVAQL---IYKIYHK 352
            IPP  YKAVA++   +YK+ ++
Sbjct: 64  EIPPNMYKAVAEIFAFLYKVANE 86


>gi|90415325|ref|ZP_01223259.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium
           HTCC2207]
 gi|90332648|gb|EAS47818.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium
           HTCC2207]
          Length = 98

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P+  A+AL Y      APV+ AKGQ  +A+ + + A +  I I E+P L  +L  Q+ +N
Sbjct: 5   PSRRAVALEY--GNRAAPVMTAKGQGEVAELIIEEAKKQGIQIAEDPQLV-ALLGQLELN 61

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y AV+ ++  +Y
Sbjct: 62  EEIPESLYVAVSVILSWVY 80


>gi|89894622|ref|YP_518109.1| hypothetical protein DSY1876 [Desulfitobacterium hafniense Y51]
 gi|219669058|ref|YP_002459493.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2]
 gi|89334070|dbj|BAE83665.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539318|gb|ACL21057.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2]
          Length = 88

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y Q+   AP +VAKG   +A+K+ + A E+ IPI ++  L  +L + V     IP
Sbjct: 5   AAALAYDQS--GAPKVVAKGTGEVARKIIEQAIEYGIPIQKDEVLVETLMR-VEYGEEIP 61

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+ VA+L+  +Y
Sbjct: 62  PQLYQVVAELLAFVY 76


>gi|126438997|ref|YP_001057280.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           668]
 gi|126218490|gb|ABN81996.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           668]
          Length = 105

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 272 PTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           P   A  L Y     D AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +
Sbjct: 5   PRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDL 63

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
           ++ IPP  Y+AVA+L+  +Y
Sbjct: 64  DARIPPQLYQAVAELLAWLY 83


>gi|53717877|ref|YP_106863.1| putative export system protein [Burkholderia pseudomallei K96243]
 gi|76809013|ref|YP_331835.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia pseudomallei 1710b]
 gi|126452833|ref|YP_001064522.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           1106a]
 gi|134283659|ref|ZP_01770358.1| flagellar biosynthesis protein-like protein [Burkholderia
           pseudomallei 305]
 gi|167717608|ref|ZP_02400844.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           DM98]
 gi|167736651|ref|ZP_02409425.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           14]
 gi|167813749|ref|ZP_02445429.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           91]
 gi|167822265|ref|ZP_02453736.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           9]
 gi|167843859|ref|ZP_02469367.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           B7210]
 gi|167892359|ref|ZP_02479761.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           7894]
 gi|167900856|ref|ZP_02488061.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167909073|ref|ZP_02496164.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           112]
 gi|167917114|ref|ZP_02504205.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           BCC215]
 gi|217425046|ref|ZP_03456542.1| FlhB domain protein [Burkholderia pseudomallei 576]
 gi|226199749|ref|ZP_03795300.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810417|ref|YP_002894868.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242314705|ref|ZP_04813721.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1106b]
 gi|254182179|ref|ZP_04888776.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           1655]
 gi|254188109|ref|ZP_04894621.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196973|ref|ZP_04903397.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           S13]
 gi|254259290|ref|ZP_04950344.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1710a]
 gi|254295778|ref|ZP_04963235.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           406e]
 gi|52208291|emb|CAH34223.1| putative export system protein [Burkholderia pseudomallei K96243]
 gi|76578466|gb|ABA47941.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           pseudomallei 1710b]
 gi|126226475|gb|ABN90015.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1106a]
 gi|134245068|gb|EBA45163.1| flagellar biosynthesis protein-like protein [Burkholderia
           pseudomallei 305]
 gi|157805669|gb|EDO82839.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           406e]
 gi|157935789|gb|EDO91459.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653716|gb|EDS86409.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           S13]
 gi|184212717|gb|EDU09760.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           1655]
 gi|217392066|gb|EEC32092.1| FlhB domain protein [Burkholderia pseudomallei 576]
 gi|225928100|gb|EEH24136.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505628|gb|ACQ97946.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242137944|gb|EES24346.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1106b]
 gi|254217979|gb|EET07363.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1710a]
          Length = 105

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 272 PTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           P   A  L Y     D AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +
Sbjct: 5   PRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDL 63

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
           ++ IPP  Y+AVA+L+  +Y
Sbjct: 64  DARIPPQLYQAVAELLAWLY 83


>gi|328947869|ref|YP_004365206.1| type III secretion exporter [Treponema succinifaciens DSM 2489]
 gi|328448193|gb|AEB13909.1| type III secretion exporter [Treponema succinifaciens DSM 2489]
          Length = 87

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +A++L+Y +   DAP + AK   ++AKKM +IA E+NIP+ E   +A ++     I   I
Sbjct: 8   FAVSLKYPENA-DAPFISAKESGILAKKMVEIAQENNIPVVEN-DIAANILSMRQIGECI 65

Query: 335 PPVFYKAVAQL 345
           P   ++A+A++
Sbjct: 66  PESTWEAIAEI 76


>gi|269792960|ref|YP_003317864.1| FhlB domain-containing flagellar protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100595|gb|ACZ19582.1| flagellar protein with uncharacterized cytoplasmic FhlB domain-like
           protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 98

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY +  + APV++A G+  +A+++ ++A E ++PI E+ +L  +L   + +   IP
Sbjct: 15  AAALRYDEERDRAPVVMASGRGHVAERILEVAREASVPIVEDAALVGAL-LALEVGEEIP 73

Query: 336 PVFYKAVAQLI 346
           P  Y AVA+++
Sbjct: 74  PELYGAVAKVL 84


>gi|312793166|ref|YP_004026089.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180306|gb|ADQ40476.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 94

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + E+ AP ++AKG+  +A+K+ + A + +IP++E+ S+A  LF  + +   IP   Y+ V
Sbjct: 15  ELEDIAPKIIAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVV 73

Query: 343 AQ-LIYKIYHKKI 354
           AQ L++  Y  KI
Sbjct: 74  AQILVFIGYLDKI 86


>gi|289678892|ref|ZP_06499782.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 107

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|238028882|ref|YP_002913113.1| putative flagellar protein FhlB [Burkholderia glumae BGR1]
 gi|237878076|gb|ACR30409.1| Putative flagellar protein FhlB [Burkholderia glumae BGR1]
          Length = 129

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  L+A+ +   A E  + +   P +  SL  QV ++  I
Sbjct: 10  AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARESGLYVHTAPEMV-SLLMQVDLDDRI 68

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA+L+  +Y
Sbjct: 69  PPALYRAVAELLAWLY 84


>gi|189426369|ref|YP_001953546.1| FlhB domain protein [Geobacter lovleyi SZ]
 gi|189422628|gb|ACD97026.1| FlhB domain protein [Geobacter lovleyi SZ]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y Q    APV+VAKG+ ++A+ +   A E  + + E P L  +L  QV ++  IP
Sbjct: 13  AAALSYKQGFY-APVVVAKGKGIMAEAIIACAKEAGVYVHESPELV-TLLMQVDLDEHIP 70

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  IY
Sbjct: 71  AELYRAVAEILVWIY 85


>gi|330899495|gb|EGH30914.1| FlhB domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 107

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALSY--DGQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|251772415|gb|EES52982.1| probable flagellar biosynthesis protein [Leptospirillum
           ferrodiazotrophum]
          Length = 90

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++ALRY+   ++AP+++  GQ  IA+ +  +A    IP+ + P L++ L + VP    +P
Sbjct: 4   SVALRYLPGVDEAPLVLVSGQGEIARGIVLLAQSLKIPVVKAPDLSQQLLR-VPPGHPVP 62

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA ++  ++
Sbjct: 63  EELYEAVAVILAALF 77


>gi|172057901|ref|YP_001814361.1| hypothetical protein Exig_1892 [Exiguobacterium sibiricum 255-15]
 gi|171990422|gb|ACB61344.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15]
          Length = 86

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  AP +VAKG   +A+++ + A +HNIPI E+ +L  +L   V ++  IP
Sbjct: 4   AIALSY-EEQMQAPKVVAKGSERVAERILEEALQHNIPIREDATLI-TLLNTVQVSEQIP 61

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  +A+L   +Y 
Sbjct: 62  NELYGVIAELFAFLYQ 77


>gi|170722818|ref|YP_001750506.1| hypothetical protein PputW619_3655 [Pseudomonas putida W619]
 gi|169760821|gb|ACA74137.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 114

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  +A EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALSY--DGQQAPTLSAKGDDELAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65

Query: 336 PVFYKAVAQLI 346
              Y  +A++I
Sbjct: 66  EALYLTIAEII 76


>gi|52080210|ref|YP_079001.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580]
 gi|52785587|ref|YP_091416.1| YlqH [Bacillus licheniformis ATCC 14580]
 gi|319646011|ref|ZP_08000241.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2]
 gi|52003421|gb|AAU23363.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580]
 gi|52348089|gb|AAU40723.1| YlqH [Bacillus licheniformis ATCC 14580]
 gi|317391761|gb|EFV72558.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2]
          Length = 93

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y + ++ AP +VAKG    A+K+ + A +  +PI E+ +L   L + + ++
Sbjct: 6   PLRRAVALHYDEMKDKAPKVVAKGSGYTAEKIIEEAQKAGVPIQEDATLVE-LMRHLELD 64

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y+ VA++   +Y
Sbjct: 65  DHIPEALYEIVAEIFSFVY 83


>gi|94314177|ref|YP_587386.1| putative flagellar protein [Cupriavidus metallidurans CH34]
 gi|93358029|gb|ABF12117.1| putative flagellar protein [Cupriavidus metallidurans CH34]
          Length = 91

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + E  AP +VAKG  + A+ +   A E  + +   P+L  +L  QV ++S IP
Sbjct: 9   AVALSYEEGEK-APRVVAKGYGVTAESIIARAQEAGVYVHNSPALV-NLLMQVDMDSQIP 66

Query: 336 PVFYKAVAQLI 346
           P  Y AVAQL+
Sbjct: 67  PQLYLAVAQLL 77


>gi|225849513|ref|YP_002729678.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644207|gb|ACN99257.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 87

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y + ++ AP +VAKG+  IA+K+ ++A ++ + I E+  L   L   + +   IP
Sbjct: 8   AVALKYERYKDTAPKVVAKGKGEIAQKIIEVARQYGVYIKEDKDLVEVL-SGLDLYQEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              YK VA+L+  IY  K
Sbjct: 67  EDLYKVVAELLAFIYKTK 84


>gi|50954412|ref|YP_061700.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950894|gb|AAT88595.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 295

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
           ++    AP +VAKG + +A ++R+ A    +P+ ++  LAR+L + VP+   IP   +  
Sbjct: 204 VEAGKSAPRVVAKGADFVATRIREEARSAGVPMVQDLPLARALHRDVPLGQPIPNEHFGQ 263

Query: 342 VAQLI 346
           VA ++
Sbjct: 264 VAHVL 268


>gi|33596160|ref|NP_883803.1| putative flagellar protein [Bordetella parapertussis 12822]
 gi|33601568|ref|NP_889128.1| putative flagellar protein [Bordetella bronchiseptica RB50]
 gi|33573163|emb|CAE36815.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33576004|emb|CAE33084.1| putative flagellar protein [Bordetella bronchiseptica RB50]
          Length = 104

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP +VAKG   +A  + + A EH + + E   L   L  QV +++ IP
Sbjct: 17  AVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIP 74

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 75  PQLYTAVAELLAWLY 89


>gi|257457069|ref|ZP_05622247.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
 gi|257445543|gb|EEV20608.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
          Length = 88

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL Y   E+  P++ A G  +IA+K+R+IA + +IP+ + P LA  L  +  I S IP
Sbjct: 8   SVALSYTFGES-VPLIAASGHGVIAQKIREIADKCHIPLIKNPLLAEVLV-EAEIGSCIP 65

Query: 336 PVFYKAVAQL 345
              Y+AVA L
Sbjct: 66  EETYQAVAAL 75


>gi|322379284|ref|ZP_08053670.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1]
 gi|322379844|ref|ZP_08054132.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5]
 gi|321147722|gb|EFX42334.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5]
 gi|321148321|gb|EFX42835.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1]
          Length = 86

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++ AP +VA G   IA+ + + A   +IP+F   SL  SL   +P++ AIP
Sbjct: 4   AVALAYNIEQDHAPKVVASGVGSIAEAIMQKAKAFDIPLFCNESLVESLL-HLPVDHAIP 62

Query: 336 PVFYKAVAQL 345
           P  Y++V ++
Sbjct: 63  PELYQSVVEV 72


>gi|33592505|ref|NP_880149.1| putative flagellar protein [Bordetella pertussis Tohama I]
 gi|33572151|emb|CAE41695.1| putative flagellar protein [Bordetella pertussis Tohama I]
 gi|332381923|gb|AEE66770.1| putative flagellar protein [Bordetella pertussis CS]
          Length = 108

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP +VAKG   +A  + + A EH + + E   L   L  QV +++ IP
Sbjct: 21  AVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIP 78

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 79  PQLYTAVAELLAWLY 93


>gi|296126255|ref|YP_003633507.1| type III secretion exporter [Brachyspira murdochii DSM 12563]
 gi|296018071|gb|ADG71308.1| type III secretion exporter [Brachyspira murdochii DSM 12563]
          Length = 87

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A A+ Y +  ++APV++AKG++ +AK+M + A+++ +P+  +   A  L  Q+ I   IP
Sbjct: 9   AAAILYNRDIHNAPVVIAKGRHYLAKRMAETAHKNKVPVVSDEKTAHHLM-QLEIGEEIP 67

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AV+ ++  IY
Sbjct: 68  YSLYEAVSIILKYIY 82


>gi|15644420|ref|NP_229472.1| flagellar biosynthesis-related protein [Thermotoga maritima MSB8]
 gi|4982247|gb|AAD36739.1|AE001808_14 flagellar biosynthesis-related protein [Thermotoga maritima MSB8]
          Length = 86

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T+    A+AL+Y  T   AP +VAKG   +A+++ ++A  H IPI E P +   L + + 
Sbjct: 3   TDEIKKAVALKYDPTRTSAPEVVAKGVGEVAERIIEMARRHGIPIEERPDIIDDLLR-LD 61

Query: 330 INSAIPPVFYKAVAQL 345
           + S IP   Y  +A++
Sbjct: 62  LFSEIPEEMYLVIAEI 77


>gi|157363588|ref|YP_001470355.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
 gi|157314192|gb|ABV33291.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
          Length = 83

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     DAP ++AKG+  IA+++ K A E  +P+   P L R L++ + +   IP
Sbjct: 8   AVALGYDPDVFDAPFVIAKGKEEIAERIIKQALEAKVPVVSSPELVRKLYR-LEVLEEIP 66

Query: 336 PVFYKAVAQLI 346
              Y AVA+++
Sbjct: 67  DDLYFAVAEIL 77


>gi|154686024|ref|YP_001421185.1| YlqH [Bacillus amyloliquefaciens FZB42]
 gi|154351875|gb|ABS73954.1| YlqH [Bacillus amyloliquefaciens FZB42]
          Length = 93

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y + ++ AP +VA G+  +A+ + K A +  +PI E+ +L   L + + ++
Sbjct: 6   PLRRAVALHYDRQKDQAPKVVATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTVD 64

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y+ VA++   +Y
Sbjct: 65  DQIPEALYETVAEIFSFVY 83


>gi|288573050|ref|ZP_06391407.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568791|gb|EFC90348.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 91

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y + E +AP LVA G   IA+++ ++A E  +PI E+ +L  +L   + I   IP
Sbjct: 11  AAALKYDREEREAPHLVASGSGRIAERIVEVAREAEVPIVEDAALVSAL-LALDIGEEIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  IY
Sbjct: 70  LDLYEAVARVLAFIY 84


>gi|323180302|gb|EFZ65854.1| surface presentation of antigens protein spaS [Escherichia coli
           1180]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           IP LL+ M   I     Q    L    VK  F  ++   G+KRI+ +  +  F+K+ + I
Sbjct: 49  IPFLLVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYI 108

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF----IATLTVLDI 211
           +     I +  + +   +   +  +  S+L        ++L +++L+    +  + + D 
Sbjct: 109 VFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW----GEMLFLLILYCLGSMIIVLIFDF 164

Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
              Y  +   +KM KQE+K E K+  GNP IK+++    R RIR
Sbjct: 165 IAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR----RERIR 204


>gi|126664979|ref|ZP_01735962.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter sp. ELB17]
 gi|126630349|gb|EBA00964.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter sp. ELB17]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y      AP + A G + +A ++ +IA EH +P++E   LA +L  ++ +N  IP
Sbjct: 13  AVALKY--DGERAPTISAVGNHELADEIIRIAREHGVPLYENAELASTL-ARLSLNDEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++   +H
Sbjct: 70  EQLYQLVAEILAFAFH 85


>gi|330940611|gb|EGH43653.1| FlhB domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 107

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA E+ +PI+E   L + L  ++ +  +IP
Sbjct: 11  AIALSY--DGQHAPTLSAKGDEQLAEAILAIAREYEVPIYENAELVK-LLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|312127964|ref|YP_003992838.1| type iii secretion exporter [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777983|gb|ADQ07469.1| type III secretion exporter [Caldicellulosiruptor hydrothermalis
           108]
          Length = 92

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E+ AP +VAKG+  +A+K+ + A + +IP++E+ ++A  LF  + +   IP   Y+ VAQ
Sbjct: 17  EDIAPKVVAKGKGYVAEKIVEKAKQEDIPVYEDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75

Query: 345 -LIYKIYHKKI 354
            L++  Y  KI
Sbjct: 76  ILVFIGYLDKI 86


>gi|307546936|ref|YP_003899415.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
 gi|307218960|emb|CBV44230.1| K04061 flagellar biosynthesis protein [Halomonas elongata DSM 2581]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y   E  AP +VA+G   +A+++ + A +H I + + P L   L  Q+ ++ AIP
Sbjct: 10  AVGLAYGDDET-APKVVARGYGELAERIVEQAKQHGIHVHDAPELV-GLLMQLDLDEAIP 67

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+ VA+L+  ++ +
Sbjct: 68  PELYRIVAELLVWLHER 84


>gi|237749753|ref|ZP_04580233.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374618|gb|EEO25009.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 91

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y + ++ AP +VA GQ  IA+ +   A E+ +P+F    L  SL K + +NS +P
Sbjct: 5   AAALAYEEYKDHAPRIVASGQGKIAEAIIAKAQEYQVPLFCNAELVDSLIK-MEVNSNVP 63

Query: 336 PVFYKAVAQL 345
              Y+AV  +
Sbjct: 64  EALYQAVVDV 73


>gi|160880531|ref|YP_001559499.1| flagellar protein FhlB-like protein [Clostridium phytofermentans
           ISDg]
 gi|160429197|gb|ABX42760.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Clostridium phytofermentans ISDg]
          Length = 122

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   ++ AP ++A G+N++A K+ + A E +IPI ++  LA +L K + +   IP
Sbjct: 34  AVAISY-DPKDPAPRIIASGKNILADKIIEKALEEDIPIHKDVPLANTLSK-LELGDCIP 91

Query: 336 PVFYKAVAQLI 346
           P  Y  V+Q++
Sbjct: 92  PELYGIVSQVL 102


>gi|53724870|ref|YP_104758.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei ATCC 23344]
 gi|67641500|ref|ZP_00440277.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|167001486|ref|ZP_02267281.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei PRL-20]
 gi|254174894|ref|ZP_04881555.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei ATCC 10399]
 gi|254359693|ref|ZP_04975964.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei 2002721280]
 gi|262193313|ref|YP_001082911.2| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|52428293|gb|AAU48886.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei ATCC 23344]
 gi|148028907|gb|EDK86839.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei 2002721280]
 gi|160695939|gb|EDP85909.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei ATCC 10399]
 gi|238522443|gb|EEP85887.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|243062693|gb|EES44879.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei PRL-20]
 gi|261825984|gb|ABN01805.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei NCTC 10229]
 gi|261835037|gb|ABO04245.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei NCTC 10247]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L
Sbjct: 10  DTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAEL 68

Query: 346 IYKIY 350
           +  +Y
Sbjct: 69  LAWLY 73


>gi|226939559|ref|YP_002794632.1| flagellar biosynthesis-related protein [Laribacter hongkongensis
           HLHK9]
 gi|226714485|gb|ACO73623.1| probable flagellar biosynthesis-related protein [Laribacter
           hongkongensis HLHK9]
          Length = 114

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  + AP + AKGQ  +A ++ + A +  + + E P L  +L  QV ++S IP
Sbjct: 11  AVALAY-REGSVAPKVTAKGQGELALRIIERAQQAGVFVHESPQLV-NLLMQVDLDSQIP 68

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  +Y
Sbjct: 69  PELYQAVAEVLAFVY 83


>gi|289578627|ref|YP_003477254.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528340|gb|ADD02692.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus
           Ab9]
          Length = 93

 Score = 45.1 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ AP +VAKGQ  IA K+ + A +  +PI+++  +   L+  + I   IP
Sbjct: 9   AVALKY-DVQDIAPKVVAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66

Query: 336 PVFYKAVAQ-LIYKIYHKKI 354
              YK VA+ LI+  Y  KI
Sbjct: 67  EDLYKIVAEILIFIGYLDKI 86


>gi|303241146|ref|ZP_07327654.1| type III secretion exporter [Acetivibrio cellulolyticus CD2]
 gi|302591273|gb|EFL61013.1| type III secretion exporter [Acetivibrio cellulolyticus CD2]
          Length = 98

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL--FKQVPINSAIP 335
           AL+Y    N AP ++  G   IA+K+ + A E++IPI++   LA +L  FK   I   IP
Sbjct: 13  ALKYSPQSNRAPEIIGLGSGEIAEKIIEKAKENDIPIYKNDELASTLSHFK---IGDEIP 69

Query: 336 PVFYKAVAQLI 346
           P  Y+ VA+++
Sbjct: 70  PELYEVVAEIL 80


>gi|266621940|ref|ZP_06114875.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
 gi|288866374|gb|EFC98672.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
          Length = 127

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ +PV++A G   +A+ +  IA +  IP+F++ S A SL   + + S IP
Sbjct: 9   AVALKYNVEEDASPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLEVGSNIP 67

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VA +  K+
Sbjct: 68  VELYEVVAAIYCKL 81


>gi|261419407|ref|YP_003253089.1| hypothetical protein GYMC61_1991 [Geobacillus sp. Y412MC61]
 gi|319766222|ref|YP_004131723.1| type III secretion exporter [Geobacillus sp. Y412MC52]
 gi|261375864|gb|ACX78607.1| conserved hypothetical protein [Geobacillus sp. Y412MC61]
 gi|317111088|gb|ADU93580.1| type III secretion exporter [Geobacillus sp. Y412MC52]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP++ AKG   +A+ +   A EH +PI ++P+L   L  +V IN  IP
Sbjct: 8   AVALSYDAALDAAPIVKAKGVGKVAEAIIAAAREHGVPIRQDPTLVE-LLGKVEINETIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+L   +Y 
Sbjct: 67  EELYALVAELFAFLYQ 82


>gi|229918614|ref|YP_002887260.1| FlhB domain protein [Exiguobacterium sp. AT1b]
 gi|229470043|gb|ACQ71815.1| FlhB domain protein [Exiguobacterium sp. AT1b]
          Length = 86

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q+  DAP +VAKG  ++A++M +IA  + +P+ E+P+L   L   + I   IP
Sbjct: 7   AMALSYEQSM-DAPHVVAKGTGIVAERMLEIALANGVPVHEDPALLSLL-SALNIEEQIP 64

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ +A+L   +Y 
Sbjct: 65  EDVYQVIAELFVFLYQ 80


>gi|291613084|ref|YP_003523241.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1]
 gi|291583196|gb|ADE10854.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1]
          Length = 113

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  + AP +VA G+ LIA+ + + A EH + + E   L   +  QV ++  IP
Sbjct: 13  AVALAY-RNGDAAPKVVASGRGLIAQAIIERAKEHGVYVHESEELV-GMLMQVELDQHIP 70

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 71  PQLYLAVAELLAWLY 85


>gi|120554879|ref|YP_959230.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Marinobacter aquaeolei VT8]
 gi|120324728|gb|ABM19043.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter aquaeolei VT8]
          Length = 106

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y      APV+ A G   +A+++ +IA ++N+P++E   LA  +  ++ +N  IP
Sbjct: 12  AVALKY--DGERAPVISATGTWELAEEIIRIARDNNVPLYENAELA-GILARLSLNEEIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ +A+++   +H
Sbjct: 69  EELYRVIAEILAFAFH 84


>gi|300870471|ref|YP_003785342.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli
           95/1000]
 gi|300688170|gb|ADK30841.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli
           95/1000]
          Length = 86

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  ++AP++++KG+ L+AK+M +IA ++ +PI  +    + L   + I   IP
Sbjct: 8   AVALLYEREIHNAPIVISKGEKLLAKRMIEIAKKNKVPIVSDEDTVKELM-HLEIGEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AV+ ++  +Y
Sbjct: 67  YSVYEAVSIILKYVY 81


>gi|297584528|ref|YP_003700308.1| putative cytoplasmic domain of flagellar protein FhlB-like protein
           [Bacillus selenitireducens MLS10]
 gi|297142985|gb|ADH99742.1| putative cytoplasmic domain of flagellar protein FhlB-like protein
           [Bacillus selenitireducens MLS10]
          Length = 99

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY +T  D P +VA G+  IA+++ ++A E++I + E+  L  +L   +
Sbjct: 15  VNGPT--AAVIRYDETNGDDPKIVASGKGYIAERILELAKENHIHMEEDSLLLENLI-DM 71

Query: 329 PINSAIPPVFYKAVAQLIYKI 349
            +   IPP  Y  +A+++  I
Sbjct: 72  DLGENIPPQLYAVIAEILLMI 92


>gi|15614038|ref|NP_242341.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans
           C-125]
 gi|10174092|dbj|BAB05194.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans
           C-125]
          Length = 99

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A  ++Y +T  DAP LVA G+  IA+++  +A  +NI + E+P L  +L   + +   IP
Sbjct: 20  AAVIQYDETSGDAPKLVAHGKGQIAEQIIDMAKRNNIHMQEDPLLVENLL-DMDLGDNIP 78

Query: 336 PVFYKAVAQLIYKI 349
           P  Y  +A+++  I
Sbjct: 79  PQLYSVMAEILLLI 92


>gi|296330823|ref|ZP_06873298.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674341|ref|YP_003866013.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151828|gb|EFG92702.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412585|gb|ADM37704.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 93

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y + ++ AP ++A G+  +A  + K A +  +PI E+ +L   L + + ++
Sbjct: 6   PIRKAVALHYDEQKDKAPKVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTVD 64

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y+ VA++   IY
Sbjct: 65  DQIPEALYETVAEIFSFIY 83


>gi|24215084|ref|NP_712565.1| FlhB-like protein [Leptospira interrogans serovar Lai str. 56601]
 gi|24196142|gb|AAN49583.1| FlhB-related protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 87

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL++I  +++APV+ A     +   +R IA ++++   + P LA SL  ++PI S IP
Sbjct: 3   SVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVLTVKNPILAESL-SELPIGSEIP 61

Query: 336 PVFYKAVAQL 345
              Y+AV  +
Sbjct: 62  ENLYRAVGAI 71


>gi|57505499|ref|ZP_00371427.1| FlhB domain protein [Campylobacter upsaliensis RM3195]
 gi|315638835|ref|ZP_07894007.1| FlhB domain protein [Campylobacter upsaliensis JV21]
 gi|57016324|gb|EAL53110.1| FlhB domain protein [Campylobacter upsaliensis RM3195]
 gi|315481053|gb|EFU71685.1| FlhB domain protein [Campylobacter upsaliensis JV21]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+AL Y + + + AP ++A G+   A K+  +A EH +PI E+  L   L K + +   I
Sbjct: 11  AVALGYQREKKESAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILSK-LDLGDEI 69

Query: 335 PPVFYKAVAQLIYKIYH 351
           PP  YKAVA++   IY 
Sbjct: 70  PPNMYKAVAEVFAFIYQ 86


>gi|16078671|ref|NP_389490.1| flagellar biosynthesis protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309483|ref|ZP_03591330.1| hypothetical protein Bsubs1_08861 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313808|ref|ZP_03595613.1| hypothetical protein BsubsN3_08797 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318732|ref|ZP_03600026.1| hypothetical protein BsubsJ_08731 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323003|ref|ZP_03604297.1| hypothetical protein BsubsS_08837 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315374|ref|YP_004207661.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5]
 gi|81342418|sp|O34867|YLQH_BACSU RecName: Full=Uncharacterized protein ylqH
 gi|2462966|emb|CAA04418.1| YlqH protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633980|emb|CAB13481.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484159|dbj|BAI85234.1| hypothetical protein BSNT_02627 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021648|gb|ADV96634.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5]
          Length = 93

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y + ++ AP ++A G+  +A  + K A +  +PI E+ +L   L + + ++
Sbjct: 6   PIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTVD 64

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y+ VA++   IY
Sbjct: 65  DQIPEALYETVAEIFSFIY 83


>gi|304311129|ref|YP_003810727.1| Probably flagellar biosynthesis-related protein [gamma
           proteobacterium HdN1]
 gi|301796862|emb|CBL45074.1| Probably flagellar biosynthesis-related protein [gamma
           proteobacterium HdN1]
          Length = 113

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y  +   AP + A G N +A+ + +IA EH +PI+E   L  ++  ++ I   IP
Sbjct: 13  AVALTYDGSR--APFISASGDNELAETILRIAREHGVPIYENKDLV-NILSRLEIGEEIP 69

Query: 336 PVFYKAVAQLIYKIY 350
            + Y+ +A++I  +Y
Sbjct: 70  ELLYRTIAEIIAFVY 84


>gi|317128463|ref|YP_004094745.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
 gi|315473411|gb|ADU30014.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
          Length = 99

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           I  PT  A  +RY +   + P +VA+G+  +A+K+  +A E+ IP+ E+  L  SL   +
Sbjct: 15  INGPT--AAVIRYDEASGEEPKVVAQGKGHVAQKILALAKENGIPMEEDTHLLESLL-DM 71

Query: 329 PINSAIPPVFYKAVAQLI 346
            +   IPP  Y  +A+++
Sbjct: 72  DLGENIPPQLYSVMAEIL 89


>gi|83720874|ref|YP_440763.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia thailandensis E264]
 gi|167617543|ref|ZP_02386174.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           thailandensis Bt4]
 gi|257140587|ref|ZP_05588849.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia thailandensis E264]
 gi|83654699|gb|ABC38762.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           thailandensis E264]
          Length = 108

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L
Sbjct: 20  DSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAEL 78

Query: 346 IYKIY 350
           +  +Y
Sbjct: 79  LAWLY 83


>gi|167579446|ref|ZP_02372320.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           thailandensis TXDOH]
          Length = 108

 Score = 44.7 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L
Sbjct: 20  DSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAEL 78

Query: 346 IYKIY 350
           +  +Y
Sbjct: 79  LAWLY 83


>gi|261855050|ref|YP_003262333.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Halothiobacillus neapolitanus c2]
 gi|261835519|gb|ACX95286.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Halothiobacillus neapolitanus c2]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           +P   A+AL+Y  TE   P +VA GQ+L+A+++   A   ++P+ E+P+LA  +   + I
Sbjct: 13  HPISRAVALKYEGTE--LPQVVATGQHLVAEQIVARAKAADVPLVEDPALA-DMLASLDI 69

Query: 331 NSAIPPVFYKAVAQLI-YKIY 350
              IP   ++AVA+++ Y +Y
Sbjct: 70  GDHIPNNLFRAVAEVLSYALY 90


>gi|119775405|ref|YP_928145.1| FlhB domain-containing protein [Shewanella amazonensis SB2B]
 gi|119767905|gb|ABM00476.1| FlhB domain protein [Shewanella amazonensis SB2B]
          Length = 100

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    N AP + AKG+ L+A+++  +A E  I I E+P+LA +    + +N +IP
Sbjct: 8   AVALSY--DGNGAPKVTAKGEALLAEEIIALARECGIHIHEDPALA-NFLTMMELNESIP 64

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+L+  +Y
Sbjct: 65  KELYVLIAELLSFVY 79


>gi|167835063|ref|ZP_02461946.1| putative flagellar biosynthesis protein [Burkholderia thailandensis
           MSMB43]
          Length = 108

 Score = 44.7 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L
Sbjct: 20  DTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYRAVAEL 78

Query: 346 IYKIY 350
           +  +Y
Sbjct: 79  LAWLY 83


>gi|91785606|ref|YP_560812.1| flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
 gi|91689560|gb|ABE32760.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
          Length = 119

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q+ + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLI 346
           PP  Y+AVA+L+
Sbjct: 68  PPQLYQAVAELL 79


>gi|163794135|ref|ZP_02188108.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199]
 gi|159180749|gb|EDP65268.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199]
          Length = 109

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL +    + AP ++AKG  ++A+++ ++A+++++ + ++P LA+ + + V ++  IP
Sbjct: 19  SIALSHDIGSDQAPTVIAKGYGVLAEQILRLAFDNDVKVRKDPDLAQ-ILEVVDVDCEIP 77

Query: 336 PVFYKAVAQLIYKIY 350
              + AVA+++  +Y
Sbjct: 78  VQAFAAVAEILTYVY 92


>gi|300820658|ref|ZP_07100809.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 119-7]
 gi|300526922|gb|EFK47991.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 119-7]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV 158
            ++   G+KRI+ +  +  F+K+ + I+ +
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFL 144


>gi|187925735|ref|YP_001897377.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
           PsJN]
 gi|187716929|gb|ACD18153.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
           PsJN]
          Length = 119

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q  + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLI 346
           PP  Y+AVA+++
Sbjct: 68  PPQLYQAVAEML 79


>gi|296157427|ref|ZP_06840262.1| type III secretion exporter [Burkholderia sp. Ch1-1]
 gi|295892199|gb|EFG71982.1| type III secretion exporter [Burkholderia sp. Ch1-1]
          Length = 119

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q+ + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLI 346
           PP  Y+AVA+L+
Sbjct: 68  PPQLYQAVAELL 79


>gi|309793919|ref|ZP_07688344.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 145-7]
 gi|308122326|gb|EFO59588.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 145-7]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPNIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV 158
            ++   G+KRI+ +  +  F+K+ + I+ +
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFL 144


>gi|301303006|ref|ZP_07209133.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 124-1]
 gi|300841670|gb|EFK69430.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 124-1]
          Length = 155

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMK 150
            ++   G+KRI+ +  +  F+K
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVK 136


>gi|238916975|ref|YP_002930492.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750]
 gi|238872335|gb|ACR72045.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750]
          Length = 96

 Score = 44.3 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP ++A G+  IA+ + + A E ++PI+ +  LA +L K + I   IP
Sbjct: 13  AVALEYTPGEQ-APKILATGRGYIAESIIEKAGEADVPIYADSKLADTLSK-LEIGEMIP 70

Query: 336 PVFYKAVAQLI 346
           P  Y  VA+++
Sbjct: 71  PELYTVVAEIL 81


>gi|226327764|ref|ZP_03803282.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198]
 gi|225203468|gb|EEG85822.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198]
          Length = 227

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 36/205 (17%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  +G    S+E    SS+L  L  +   +  G + +T 
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKE---LSSVLMILGGVSLLWMSGGF-ITR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-----------------LLFM 103
           +L+ +L               F   H  +    L+IP                   L+F+
Sbjct: 56  ELYAMLTEG------------FTFNHHLIGNENLLIPRFGSLIKQAVFALSPVFLGLVFV 103

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
             G GS L+  I   +   +K   K+ +   G+KRI+S+N L    K+ +K   VG   T
Sbjct: 104 AIG-GSALLGGIN-FSSKSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSTFVGIAAT 161

Query: 164 ISLTENYFTMLDFISANPHSILYHA 188
           + L  N+  +L  I+  P S L +A
Sbjct: 162 VFLWHNWNDILHLITLPPLSALANA 186


>gi|167568373|ref|ZP_02361247.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis
           C6786]
          Length = 107

 Score = 44.3 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L+ 
Sbjct: 22  APRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLA 80

Query: 348 KIY 350
            +Y
Sbjct: 81  WLY 83


>gi|167561155|ref|ZP_02354071.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis
           EO147]
          Length = 105

 Score = 44.3 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L+ 
Sbjct: 22  APRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLA 80

Query: 348 KIY 350
            +Y
Sbjct: 81  WLY 83


>gi|307731337|ref|YP_003908561.1| type III secretion exporter [Burkholderia sp. CCGE1003]
 gi|307585872|gb|ADN59270.1| type III secretion exporter [Burkholderia sp. CCGE1003]
          Length = 123

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q  + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQGGDAAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLI 346
           PP  Y+AVA+L+
Sbjct: 68  PPQLYQAVAELL 79


>gi|170696027|ref|ZP_02887164.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
 gi|170139019|gb|EDT07210.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
          Length = 123

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     D AP ++AKG  ++A  + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDANGGDPAPRVIAKGYGMLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLI 346
           PP  Y+AVA+L+
Sbjct: 68  PPQLYQAVAELL 79


>gi|74317614|ref|YP_315354.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259]
 gi|74057109|gb|AAZ97549.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259]
          Length = 124

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 258 MMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316
           + E  S  T  + + PT  A A    +  + AP +VAKG+ ++A  + + A    + + E
Sbjct: 17  LSEGASLGTAALQSRPTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHE 76

Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
              L  +L  Q+ ++S IPP  Y AVA+L+  +YH
Sbjct: 77  SRELL-ALLMQIDLDSHIPPQLYIAVAELLAWLYH 110


>gi|312622764|ref|YP_004024377.1| type iii secretion exporter [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203231|gb|ADQ46558.1| type III secretion exporter [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 92

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   E+ AP ++AKG+  +A+++ + A + +IP++E+  +A  LF  + +   IP
Sbjct: 9   AVAIKY-DLEDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVAEKLF-NLELQEYIP 66

Query: 336 PVFYKAVAQLI 346
              Y+ +AQ++
Sbjct: 67  EDLYEVIAQIL 77


>gi|330883125|gb|EGH17274.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 116

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           A +++ NPTHYA+AL Y   E   P++  KG++  A  +   A +  IP+ +   L R+L
Sbjct: 16  ADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTL 75

Query: 325 FKQVPINSAIPPVFYKAVAQLIYKI 349
           ++   +   IP    +AV   IYK+
Sbjct: 76  YR-AKVGKYIPRPTLQAVGH-IYKV 98


>gi|326791379|ref|YP_004309200.1| type III secretion exporter [Clostridium lentocellum DSM 5427]
 gi|326542143|gb|ADZ84002.1| type III secretion exporter [Clostridium lentocellum DSM 5427]
          Length = 94

 Score = 43.9 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q + +AP +VA G   +A+ + + A +H++P++E+  LA ++  ++ +   IP
Sbjct: 9   AVALSY-QEDMNAPTIVASGSGKVAENILEEAKKHHVPVYEDKKLA-TILAELQVGEQIP 66

Query: 336 PVFYKAVAQLI 346
              Y+ VA+++
Sbjct: 67  TELYELVAKVL 77


>gi|317122916|ref|YP_004102919.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM
           12885]
 gi|315592896|gb|ADU52192.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM
           12885]
          Length = 211

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A ALRY    + AP +VA G   +A+ + + A E  +P    P     +  ++P
Sbjct: 18  TRPPRAAAALRYDPARDGAPRVVAAGFGAMAEAILRRAREAGVPQVTSPVA--PILARIP 75

Query: 330 INSAIPPVFYKAVAQLI 346
               IPP  Y+ VA+++
Sbjct: 76  PGQEIPPALYEVVARIM 92


>gi|295678020|ref|YP_003606544.1| type III secretion exporter [Burkholderia sp. CCGE1002]
 gi|295437863|gb|ADG17033.1| type III secretion exporter [Burkholderia sp. CCGE1002]
          Length = 122

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AP +VAKG  L+A  + + A E  + + E P +  SL  QV +++ IPP  Y+AVA+L+
Sbjct: 22  APRVVAKGYGLLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARIPPELYQAVAELL 79


>gi|150388629|ref|YP_001318678.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF]
 gi|149948491|gb|ABR47019.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF]
          Length = 96

 Score = 43.5 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + AP + A GQ ++A+++ + A E+++ I+ +  L + L  +  + + IP
Sbjct: 10  AIALQYDVERDHAPRITAAGQGMMAERILERAEENDVAIYHDERLVKELI-EFKVGTEIP 68

Query: 336 PVFYKAVAQLI 346
              Y+ VAQ++
Sbjct: 69  TELYEVVAQVL 79


>gi|325290208|ref|YP_004266389.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271]
 gi|324965609|gb|ADY56388.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271]
          Length = 101

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           I  P   A AL Y  T   AP +VAKG+  IA+K+ + A E  IPI +  +L  +L   V
Sbjct: 8   IQIPKEKAAALAYEHT--GAPRVVAKGEGYIAQKIIEKAGEQGIPIQKNEALVNALM-LV 64

Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
            ++  IP   Y+ VAQ++  IY
Sbjct: 65  ELSGEIPVELYEVVAQVLAFIY 86


>gi|119899000|ref|YP_934213.1| flagellar related protein [Azoarcus sp. BH72]
 gi|119671413|emb|CAL95326.1| conserved hypothetical flagellar related protein [Azoarcus sp.
           BH72]
          Length = 125

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y   E  AP +VAKG+ LIA+++ + A +  I + +   L  +L  QV ++
Sbjct: 13  PRGEAVALTYASGEA-APRVVAKGRGLIAQEIIERARDAGIYVHQSRELV-ALLMQVDLD 70

Query: 332 SAIPPVFYKAVAQLIYKIYH 351
           S IPP  Y  VA+L+  +Y 
Sbjct: 71  SHIPPQLYVVVAELLAWLYR 90


>gi|42527803|ref|NP_972901.1| FlhB domain-containing protein [Treponema denticola ATCC 35405]
 gi|41818631|gb|AAS12820.1| FlhB domain protein [Treponema denticola ATCC 35405]
 gi|325474963|gb|EGC78149.1| FlhB domain-containing protein [Treponema denticola F0402]
          Length = 87

 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP++ A G+ L AK++++ A  + I I E+ +LA  L     I S IP
Sbjct: 12  AVALSY-ALEAKAPIITASGRGLTAKRIKEAAERNKIKIVEDETLANILIHH-EIGSCIP 69

Query: 336 PVFYKAVAQL 345
              YKAVA +
Sbjct: 70  EYTYKAVAAI 79


>gi|270487693|ref|ZP_06204767.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270336197|gb|EFA46974.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 216

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +++   K+E P++ K+  A  +G+ P S++ ++ + ++   I LL  F P   ++ S   
Sbjct: 2   SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFI-LLSLFLPYYKALVSQSF 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPV-LNL 120
           V +A    +  +  +   FLL +L + A  L  +IP + LF M      L   IP   N 
Sbjct: 61  VSVAQLASQLDDQGALEQFLLANLFIFAKFLATLIP-IPLFSM------LATLIPGGWNF 113

Query: 121 NHVK--PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
             VK  P  K++S   GIKRI+S +N    +K   K  +V   + + +  +   +L   +
Sbjct: 114 TPVKLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQT 173

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
                 +   F     +L+  +  +     +DI  S+H +  K
Sbjct: 174 LPLEEAITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKK 216


>gi|182419087|ref|ZP_02950341.1| flagella-associated protein [Clostridium butyricum 5521]
 gi|237669411|ref|ZP_04529393.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377042|gb|EDT74612.1| flagella-associated protein [Clostridium butyricum 5521]
 gi|237655298|gb|EEP52856.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 85

 Score = 43.5 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A AL+Y +  +DAP + A G   IA K+ + A E+N+PI     L   L   V +
Sbjct: 2   NQRKKAAALKY-EFNSDAPTVAASGMGYIADKIIEKAEENNVPIVYNKELT-DLLCNVDV 59

Query: 331 NSAIPPVFYKAVAQLI 346
            + IP   Y+AVA +I
Sbjct: 60  GTEIPEELYEAVAHVI 75


>gi|87119456|ref|ZP_01075353.1| FlhB domain protein [Marinomonas sp. MED121]
 gi|86164932|gb|EAQ66200.1| FlhB domain protein [Marinomonas sp. MED121]
          Length = 80

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP + AKG  LIA+++ ++A E+NI + + P L   L   + +   IP
Sbjct: 5   AIALNY--DFHGAPTITAKGSGLIAERIMQVAEENNIILHKSPELVEVL-GHLELGDEIP 61

Query: 336 PVFYKAVAQLI 346
              Y AVA++I
Sbjct: 62  EALYLAVAEII 72


>gi|124384516|ref|YP_001028101.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|254201857|ref|ZP_04908221.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei FMH]
 gi|254207188|ref|ZP_04913539.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei JHU]
 gi|147747751|gb|EDK54827.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei FMH]
 gi|147752730|gb|EDK59796.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei JHU]
          Length = 127

 Score = 43.1 bits (100), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 266 TIIITNPTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           T   ++    A  L Y     D AP +VAKG  L+A+++ + A +  + +   P +  SL
Sbjct: 21  TTTGSSRNERAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SL 79

Query: 325 FKQVPINSAIPPVFYKAVAQLIYKIY 350
             QV +++ IPP  Y+AVA+L+  +Y
Sbjct: 80  LMQVDLDARIPPQLYQAVAELLAWLY 105


>gi|308173570|ref|YP_003920275.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606434|emb|CBI42805.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens
           DSM 7]
 gi|328553497|gb|AEB23989.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens TA208]
 gi|328911711|gb|AEB63307.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens
           LL3]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + ++ AP ++A G+  +A+ + K A +  +PI E+ +L   L + + ++  IP
Sbjct: 10  AVALHYDRQKDQAPKVIATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTVDDQIP 68

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA++   +Y
Sbjct: 69  EALYETVAEIFSFVY 83


>gi|302872175|ref|YP_003840811.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47]
 gi|302575034|gb|ADL42825.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47]
          Length = 92

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AP +VAKG+  +A+K+ + A + NIP++++ ++A  LF  + +   IP   Y+ VAQ++
Sbjct: 20  APKVVAKGKGYVAEKIIEKAKQENIPVYKDQNVAEKLF-NLELQEYIPEDLYEVVAQIL 77


>gi|297544850|ref|YP_003677152.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842625|gb|ADH61141.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ AP ++AKGQ  IA K+ + A +  +PI+++  +   L+  + I   IP
Sbjct: 9   AVALKY-DVQDIAPKVIAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66

Query: 336 PVFYKAVAQ-LIYKIYHKKI 354
              Y  VA+ LI+  Y  KI
Sbjct: 67  EDLYNIVAEILIFIGYLDKI 86


>gi|330818617|ref|YP_004362322.1| Flagellar protein FhlB [Burkholderia gladioli BSR3]
 gi|327371010|gb|AEA62366.1| Flagellar protein FhlB [Burkholderia gladioli BSR3]
          Length = 118

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  L+A+ +   A E  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARAREAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA+L+  +Y
Sbjct: 68  PPALYQAVAELLAWLY 83


>gi|311068129|ref|YP_003973052.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942]
 gi|310868646|gb|ADP32121.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942]
          Length = 93

 Score = 43.1 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y + ++ AP ++A G+  IA+ +   A +  +PI E+ +L   L + + ++
Sbjct: 6   PLRKAVALHYDEQKDKAPKVIATGRGHIAENIIAEAKKAGVPIQEDRTLVE-LMRHLTVD 64

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y+ VA++   +Y
Sbjct: 65  DQIPEALYETVAEIFSFVY 83


>gi|121601225|ref|YP_994245.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|121230035|gb|ABM52553.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei SAVP1]
          Length = 150

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 266 TIIITNPTHYALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           T   ++    A  L Y     D AP +VAKG  L+A+++ + A +  + +   P +  SL
Sbjct: 44  TTTGSSRNERAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SL 102

Query: 325 FKQVPINSAIPPVFYKAVAQLIYKIY 350
             QV +++ IPP  Y+AVA+L+  +Y
Sbjct: 103 LMQVDLDARIPPQLYQAVAELLAWLY 128


>gi|119476289|ref|ZP_01616640.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine
           gamma proteobacterium HTCC2143]
 gi|119450153|gb|EAW31388.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine
           gamma proteobacterium HTCC2143]
          Length = 113

 Score = 43.1 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A +L+Y    + AP++ A G   +A+++  IA +H IP+FE  +L   L   + + 
Sbjct: 9   PEKKAASLQY--DGSGAPIVSAAGSGEVAEQIIAIARQHEIPLFENEALLE-LLVNIGVG 65

Query: 332 SAIPPVFYKAVAQLI---YKIYHK 352
             IP   Y  +AQ+I   YKI  K
Sbjct: 66  EEIPESLYLCIAQVIAFAYKIQGK 89


>gi|222528969|ref|YP_002572851.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455816|gb|ACM60078.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 92

 Score = 42.7 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   E+ AP ++AKG+  +A+++ + A + +IP++E+  +   LF  + +   IP
Sbjct: 9   AVAIKY-DLEDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVVEKLF-NLELQEYIP 66

Query: 336 PVFYKAVAQLI 346
              Y+ VAQ++
Sbjct: 67  EDLYEVVAQIL 77


>gi|148264415|ref|YP_001231121.1| flagellar protein FhlB-like protein [Geobacter uraniireducens Rf4]
 gi|146397915|gb|ABQ26548.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Geobacter uraniireducens Rf4]
          Length = 94

 Score = 42.7 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP ++AKG  + A+ +  +A E+ + + E P L  +L  QV  +  IPP  Y+AVA+L+ 
Sbjct: 22  APRVIAKGCGVTAEAIIALARENGVYVHESPDLM-NLLLQVDQDRFIPPELYRAVAELLA 80

Query: 348 KIY 350
            +Y
Sbjct: 81  WLY 83


>gi|206558931|ref|YP_002229691.1| putative export system protein [Burkholderia cenocepacia J2315]
 gi|198034968|emb|CAR50840.1| putative export system protein [Burkholderia cenocepacia J2315]
          Length = 105

 Score = 42.7 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 11/93 (11%)

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M ATSR           A AL Y     DA P +VAKG  ++A+ +   A++  + +   
Sbjct: 1   MSATSRKR---------AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTA 51

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           P +  SL  QV ++  IPP  Y+AVA L+  +Y
Sbjct: 52  PEMV-SLLMQVDLDDRIPPQLYQAVADLLAWLY 83


>gi|157692287|ref|YP_001486749.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
 gi|157681045|gb|ABV62189.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
          Length = 91

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           + P   A+AL Y + +  AP +VA G   +A  + + A +  +PI E+ +L   L + + 
Sbjct: 4   SKPLRRAVALHYDEEKQKAPKVVATGSGYVADNIIEEAKKSGVPIQEDRNLV-ELMRHLT 62

Query: 330 INSAIPPVFYKAVAQLIYKIY 350
           ++  IP   Y  VA++   IY
Sbjct: 63  LDEEIPEALYDTVAEIFSFIY 83


>gi|323527687|ref|YP_004229840.1| type III secretion exporter [Burkholderia sp. CCGE1001]
 gi|323384689|gb|ADX56780.1| type III secretion exporter [Burkholderia sp. CCGE1001]
          Length = 122

 Score = 42.7 bits (99), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y    +D AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAHGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLI 346
           PP  Y+AVA+L+
Sbjct: 68  PPQLYQAVAELL 79


>gi|311105963|ref|YP_003978816.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8]
 gi|310760652|gb|ADP16101.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8]
          Length = 105

 Score = 42.7 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y + ++ AP +VAKG   +A  + + A E+ + + E   L   L  QV +++ IP
Sbjct: 19  AVAISY-EDKDGAPRVVAKGYGQLADTIVRAAQENGLYVHESRELV-GLLMQVDLDAHIP 76

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 77  PQLYVAVAELLAWLY 91


>gi|194014522|ref|ZP_03053139.1| FlhB domain protein [Bacillus pumilus ATCC 7061]
 gi|194013548|gb|EDW23113.1| FlhB domain protein [Bacillus pumilus ATCC 7061]
          Length = 91

 Score = 42.7 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           + P   A+AL Y + +  AP +VA G   +A  + + A +  +PI E+ +L   L + + 
Sbjct: 4   SKPLRRAVALHYDEEKQKAPKVVATGSGYVADHIIEEAKKSGVPIQEDRNLVE-LMRHLT 62

Query: 330 INSAIPPVFYKAVAQLIYKIY 350
           ++  IP   Y  VA++   IY
Sbjct: 63  LDEEIPEALYDTVAEIFSFIY 83


>gi|187935380|ref|YP_001887350.1| flagella-associated protein [Clostridium botulinum B str. Eklund
           17B]
 gi|188588297|ref|YP_001922288.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251780672|ref|ZP_04823592.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|187723533|gb|ACD24754.1| flagella-associated protein [Clostridium botulinum B str. Eklund
           17B]
 gi|188498578|gb|ACD51714.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243084987|gb|EES50877.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 86

 Score = 42.4 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y     +AP++ A G   IA K+ + A E+ +PI     LA +L   V +   IP
Sbjct: 7   AAALKYELNNTEAPMIAASGMGHIADKIIEKAQENEVPIVYNKELA-NLLCNVDVGDEIP 65

Query: 336 PVFYKAVAQLI 346
              Y+AVA +I
Sbjct: 66  TELYEAVAHVI 76


>gi|148270251|ref|YP_001244711.1| FlhB domain-containing protein [Thermotoga petrophila RKU-1]
 gi|170288949|ref|YP_001739187.1| FlhB domain-containing protein [Thermotoga sp. RQ2]
 gi|281412554|ref|YP_003346633.1| FlhB domain protein [Thermotoga naphthophila RKU-10]
 gi|147735795|gb|ABQ47135.1| FlhB domain protein [Thermotoga petrophila RKU-1]
 gi|170176452|gb|ACB09504.1| FlhB domain protein [Thermotoga sp. RQ2]
 gi|281373657|gb|ADA67219.1| FlhB domain protein [Thermotoga naphthophila RKU-10]
          Length = 86

 Score = 42.4 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T+    A+AL+Y  +   AP +VAKG   +A+++ ++A  + IPI E P +   L + + 
Sbjct: 3   TDEIKKAVALKYDPSRTSAPEVVAKGVGEVAERIIEVAKRYGIPIEERPDIIDDLLR-LD 61

Query: 330 INSAIPPVFYKAVAQL 345
           + S IP   Y  +A++
Sbjct: 62  LFSEIPEEMYLVIAEI 77


>gi|134297235|ref|YP_001120970.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4]
 gi|134140392|gb|ABO56135.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4]
          Length = 105

 Score = 42.4 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  L+A  + + A +  + +   P +  SL  QV ++  I
Sbjct: 7   AAALVYDPKGGDAAPRVVAKGYGLVADMIVERARDAGLYVHTAPEMV-SLLMQVDLDDRI 65

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 66  PPQLYQAVADLLAWLY 81


>gi|312134792|ref|YP_004002130.1| type iii secretion exporter [Caldicellulosiruptor owensensis OL]
 gi|311774843|gb|ADQ04330.1| type III secretion exporter [Caldicellulosiruptor owensensis OL]
          Length = 92

 Score = 42.4 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           AP ++AKG+  +A+K+ + A +  IP+FE   +A  LF  + +   IP   Y+ VAQ++
Sbjct: 20  APKVIAKGKGYVAEKIIEKAKQEEIPVFEHKDVAEKLF-SLELQEYIPEDLYEVVAQIL 77


>gi|309389531|gb|ADO77411.1| FlhB domain protein [Halanaerobium praevalens DSM 2228]
          Length = 89

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL+Y Q  + AP ++A G+  IA+ + K A E NIPI ++  + + L  ++ I   IP 
Sbjct: 10  VALKYDQKNDQAPRIIASGKGSIAEMIIKKAKEENIPIKKDKDVVQVLA-ELNIGEQIPE 68

Query: 337 VFYKAVAQLI 346
             Y  +A+++
Sbjct: 69  ELYTVIAEIL 78


>gi|293605030|ref|ZP_06687424.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC
           43553]
 gi|292816579|gb|EFF75666.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC
           43553]
          Length = 105

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   ++ AP +VAKG   +A  + + A E+ + + E   L   L  QV +++ IP
Sbjct: 19  AVAISY-DDKDGAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 76

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 77  PQLYVAVAELLAWLY 91


>gi|253681686|ref|ZP_04862483.1| flagella-associated protein [Clostridium botulinum D str. 1873]
 gi|253561398|gb|EES90850.1| flagella-associated protein [Clostridium botulinum D str. 1873]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y +   DAP++ A G   IA K+ + A ++ +P+     LA  L   V + S+IP
Sbjct: 9   AAALKY-ELNYDAPIVSAAGMGHIADKIVEEAKKNEVPVVYNKELA-DLLTNVDVGSSIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|187777232|ref|ZP_02993705.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC
           15579]
 gi|187774160|gb|EDU37962.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC
           15579]
          Length = 89

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +II N    A AL+Y ++   +PV+ A G   +A K+ + A E  +PI  +  LA +L  
Sbjct: 1   MIILNERKKAAALKYEESYT-SPVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58

Query: 327 QVPINSAIPPVFYKAVAQLI 346
            + I  +IP   Y AVA++I
Sbjct: 59  NIDIGDSIPYELYDAVAKVI 78


>gi|115353155|ref|YP_774994.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD]
 gi|115283143|gb|ABI88660.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD]
          Length = 106

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|331268716|ref|YP_004395208.1| flagella-associated protein [Clostridium botulinum BKT015925]
 gi|329125266|gb|AEB75211.1| flagella-associated protein [Clostridium botulinum BKT015925]
          Length = 90

 Score = 42.0 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y +   DAP++ A G   IA K+ + A ++ +P+     LA  L   V + S+IP
Sbjct: 9   AAALKY-ELNYDAPIVSAAGMGRIADKIIEEAKKNEVPVVYNKELA-DLLTNVDVGSSIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|30250018|ref|NP_842088.1| flagellar biosynthetic protein [Nitrosomonas europaea ATCC 19718]
 gi|30139125|emb|CAD85989.1| possible similar to flagellar biosynthetic protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 119

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
           E T         P   A+AL Y  +   AP +VAKG+ LIA+++ + A E  + + E   
Sbjct: 14  EPTDSPAPPEHTPIPGAVALAY-HSGMTAPQVVAKGRGLIAEEIIRRAQEAGVYVHESAE 72

Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           L  +L  QV ++  IPP  Y AVA+L+  +Y
Sbjct: 73  LV-ALLMQVDLDDHIPPELYIAVAELLAWLY 102


>gi|192361951|ref|YP_001982536.1| FlhB domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688116|gb|ACE85794.1| FlhB domain protein [Cellvibrio japonicus Ueda107]
          Length = 100

 Score = 42.0 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP + AKG   +A+++  IA EH +P+ + PSL   L   + +   +P   Y AVA +I
Sbjct: 21  NAPQVTAKGAGKVAEEIIAIAQEHGVPLCDNPSLV-DLLVNLELGDEVPEALYIAVAYII 79

Query: 347 YKIYH 351
              Y 
Sbjct: 80  AFAYQ 84


>gi|168334054|ref|ZP_02692270.1| hypothetical protein Epulo_03924 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 84

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + +AP + AKG+  +A+ +   A ++ IP++E+ +LA +L  +V I S IP
Sbjct: 4   AVALSY---KAEAPEVTAKGKGKVAENIIATAEKNEIPVYEDKNLA-NLLTEVEIGSQIP 59

Query: 336 PVFYKAVAQLI 346
              Y+ VA+++
Sbjct: 60  EEVYELVAKIL 70


>gi|212640409|ref|YP_002316929.1| hypothetical protein Aflv_2591 [Anoxybacillus flavithermus WK1]
 gi|212561889|gb|ACJ34944.1| Uncharacterized protein containing cytoplasmic domain of flagellar
           protein FhlB [Anoxybacillus flavithermus WK1]
          Length = 95

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A  +RY Q +  AP +VA G+  +A+K+ ++A ++ +PI ++ +L + L   + +   IP
Sbjct: 17  AAVIRYEQGDK-APTVVAHGRGYVAEKIIELAKQNGVPIEQDAALVQHLL-DLDLGDTIP 74

Query: 336 PVFYKAVAQLIYKI 349
           P  Y  +A+++  I
Sbjct: 75  PQLYAVIAEILILI 88


>gi|171317301|ref|ZP_02906498.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5]
 gi|171097562|gb|EDT42399.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5]
          Length = 106

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|172062010|ref|YP_001809662.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6]
 gi|171994527|gb|ACB65446.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6]
          Length = 106

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|15639896|ref|NP_219346.1| hypothetical protein TP0911 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026134|ref|YP_001933906.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3323223|gb|AAC65862.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018709|gb|ACD71327.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060268|gb|ADD73003.1| FlhB domain protein [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 83

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL Y  T + AP++VA G   IA+K+ +IA + +I + ++  LAR L +   I + IP
Sbjct: 8   SVALSY-ATGDKAPIIVASGTGAIAEKIVEIAKKFDIALVQDELLARVLSEH-RIGACIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+ V+ +   +Y ++
Sbjct: 66  PETYQVVSAIFAFLYTQQ 83


>gi|556364|gb|AAA50308.1| flhB [Proteus mirabilis]
          Length = 74

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IP+ E P LAR+L++   I  AIP   Y AVA+++  +Y 
Sbjct: 1   IPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQ 40


>gi|148378183|ref|YP_001252724.1| hypothetical protein CBO0180 [Clostridium botulinum A str. ATCC
           3502]
 gi|148287667|emb|CAL81732.1| putative protein exporter [Clostridium botulinum A str. ATCC 3502]
          Length = 89

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           ++I N    A AL+Y ++   +PV+ A G   +A K+ + A E  +PI  +  LA +L  
Sbjct: 1   MVILNERKKAAALKYEESYT-SPVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58

Query: 327 QVPINSAIPPVFYKAVAQLI 346
            + I  +IP   Y AVA++I
Sbjct: 59  NIDIGDSIPYELYDAVAKVI 78


>gi|326796438|ref|YP_004314258.1| type III secretion exporter [Marinomonas mediterranea MMB-1]
 gi|326547202|gb|ADZ92422.1| type III secretion exporter [Marinomonas mediterranea MMB-1]
          Length = 82

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y     +AP + AKG  L+A+++ ++A E+++ + E P L   L   + I   IP
Sbjct: 4   AVALQY--DYQNAPKVTAKGSGLLAERIMEVAEENDVLLHESPELVEVL-ATLEIGDEIP 60

Query: 336 PVFYKAVAQLI 346
              Y AVA++I
Sbjct: 61  ESLYLAVAEII 71


>gi|170699624|ref|ZP_02890662.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10]
 gi|170135440|gb|EDT03730.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10]
          Length = 106

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|311030145|ref|ZP_07708235.1| hypothetical protein Bm3-1_06301 [Bacillus sp. m3-13]
          Length = 98

 Score = 41.6 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y Q +  APV+ AKG  +IA+ + + A +H IP+ E+ +L   L +     S IP
Sbjct: 11  AVAIKYDQAKTVAPVVKAKGAGIIAENIIQEAKKHQIPLQEDGALLEVLMELELNES-IP 69

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++  +Y+
Sbjct: 70  EELYEVVAEVLAYVYN 85


>gi|107023990|ref|YP_622317.1| flagellar protein FhlB [Burkholderia cenocepacia AU 1054]
 gi|116691077|ref|YP_836700.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424]
 gi|170734411|ref|YP_001766358.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3]
 gi|254246929|ref|ZP_04940250.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184]
 gi|105894179|gb|ABF77344.1| putative flagellar protein FhlB [Burkholderia cenocepacia AU 1054]
 gi|116649166|gb|ABK09807.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424]
 gi|124871705|gb|EAY63421.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184]
 gi|169817653|gb|ACA92236.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3]
          Length = 105

 Score = 41.6 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG  ++A+ +   A++  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|289523587|ref|ZP_06440441.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503279|gb|EFD24443.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 100

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY +  + AP ++A G+  IA+K+   A +  IP+ E+ SL  S+   V +   IP
Sbjct: 13  AAALRYDKKLDSAPRVIASGRGWIAEKIIDEARKRGIPLVED-SLLVSVLLGVNLGEEIP 71

Query: 336 PVFYKAVAQLI 346
              Y AVA+++
Sbjct: 72  EEAYLAVARIL 82


>gi|167034893|ref|YP_001670124.1| hypothetical protein PputGB1_3898 [Pseudomonas putida GB-1]
 gi|166861381|gb|ABY99788.1| conserved hypothetical protein [Pseudomonas putida GB-1]
          Length = 112

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y      AP L AKG + +A+ +  +A EH +PI+E   L R L  ++ +  
Sbjct: 6   TRQAIALNY--DGQQAPTLSAKGDDALAEAILALAREHEVPIYENAELVR-LLARLELGE 62

Query: 333 AIPPVFYKAVAQLI 346
            IP   Y  +A++I
Sbjct: 63  QIPEALYLTIAEII 76


>gi|114320959|ref|YP_742642.1| flagellar protein FhlB-like protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227353|gb|ABI57152.1| Uncharacterized cytoplasmic domain of flagellar protein FhlB-like
           protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 119

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP + AKG   +A+++ ++A EH++P+  +  L  ++  Q+ +  AIP
Sbjct: 18  AVALEY--GGQGAPRVTAKGAGPLAERIIELAAEHDVPLETDADLV-AVLAQLELEQAIP 74

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA++I   Y
Sbjct: 75  ESLYRVVAEVIAFAY 89


>gi|217077929|ref|YP_002335647.1| flagellar biosynthesis [Thermosipho africanus TCF52B]
 gi|217037784|gb|ACJ76306.1| flagellar biosynthesis [Thermosipho africanus TCF52B]
          Length = 75

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL+Y    +  P ++AKG+  +AKK+ +IA +  +PI +   L   L+K + +   IP 
Sbjct: 1   MALKYDPKVDFVPFVIAKGKEEVAKKILEIAKKSGVPIVKSSELVDELYK-LKVLEEIPK 59

Query: 337 VFYKAVAQLI 346
             Y AVA++I
Sbjct: 60  KLYLAVAEII 69


>gi|317406222|gb|EFV86468.1| flagellar protein [Achromobacter xylosoxidans C54]
          Length = 107

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   ++ AP +VAKG   +A  + + A E+ + + E   L   L  QV +++ IP
Sbjct: 18  AVAISY-DDKDAAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 75

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y AVA+L+  +Y
Sbjct: 76  PQLYVAVAELLAWLY 90


>gi|325526461|gb|EGD04041.1| putative flagellar protein FhlB [Burkholderia sp. TJI49]
          Length = 105

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG   +A+ +   A++  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|255528146|ref|ZP_05394973.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|255508159|gb|EET84572.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
          Length = 87

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY Q   +APV+ A G   +A K+ + A + N+PI  +  L   L   V +  +IP
Sbjct: 7   AAALRYEQGY-EAPVVTAAGMGYVADKIIENAEKANVPIVYDKELT-DLLSSVDVGDSIP 64

Query: 336 PVFYKAVAQLI 346
              Y AVA++I
Sbjct: 65  FELYDAVAKVI 75


>gi|154175076|ref|YP_001408824.1| putative flagellar assembly protein [Campylobacter curvus 525.92]
 gi|112803684|gb|EAU01028.1| putative flagellar assembly protein [Campylobacter curvus 525.92]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 81/155 (52%), Gaps = 4/155 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D    KTE  +SKKIEDA  +GN P S++ + F++++  ++ LL   +     V +
Sbjct: 1   MADDD--QEKTEEATSKKIEDAKKDGNVPKSQDIAGFATLVIAILVLLAMLNFMREQVVA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L++  +     ++   +  + ++  L+ S   +++P  +   + GI + ++Q   +   
Sbjct: 59  -LYIYYSKFIGVEITPSALNLIVINTLARSL-LMILPICICVAIAGIVANVMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
             + P   +++  +G+K ++S+   ++ +K   K+
Sbjct: 117 KPITPDINKINPLKGLKNLFSMKKAIDSVKIVAKV 151


>gi|302343755|ref|YP_003808284.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii
           DSM 2075]
 gi|301640368|gb|ADK85690.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii
           DSM 2075]
          Length = 106

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 276 ALALRY-IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+ALRY  +       + AKG+  +A+++ ++A +H +PI ++P L   +  ++ I+  I
Sbjct: 16  AVALRYGPEGHETTGAVAAKGRLRLAERIIELARQHGVPIKQDPDLVE-ILARLDIDEEI 74

Query: 335 PPVFYKAVAQLI 346
           PP  Y   A+++
Sbjct: 75  PPELYVVAAEIL 86


>gi|167751329|ref|ZP_02423456.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702]
 gi|167655575|gb|EDR99704.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702]
 gi|291530383|emb|CBK95968.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Eubacterium siraeum 70/3]
 gi|291557246|emb|CBL34363.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Eubacterium siraeum V10Sc8a]
          Length = 94

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    N APV+VA G   +AKK+  IA E+ +P++ + S A +L   +     IP
Sbjct: 11  AAALKYNPDLNYAPVVVASGLGELAKKIINIADENGVPVYRDDSTA-ALLVMLNSGETIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ +A +  ++ +
Sbjct: 70  VELYRIIAAIYAEVVY 85


>gi|302873574|ref|YP_003842207.1| type III secretion exporter [Clostridium cellulovorans 743B]
 gi|307688245|ref|ZP_07630691.1| type III secretion exporter [Clostridium cellulovorans 743B]
 gi|302576431|gb|ADL50443.1| type III secretion exporter [Clostridium cellulovorans 743B]
          Length = 88

 Score = 40.8 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y Q   ++P++ A+G   +A+K+ + A E+++PI     +A  L   V +  +IP
Sbjct: 7   AAALKYEQGY-ESPIVAAQGVGYVAEKIVEKADENDVPIVYNKEMA-DLLTNVDVGDSIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA+++  I
Sbjct: 65  EELYAAVAEIMAHI 78


>gi|152997420|ref|YP_001342255.1| hypothetical protein Mmwyl1_3417 [Marinomonas sp. MWYL1]
 gi|150838344|gb|ABR72320.1| conserved hypothetical protein [Marinomonas sp. MWYL1]
          Length = 82

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + AP +VAKG  L+A+K+  +A E+++ + + P L   +   + +   IP
Sbjct: 4   AVALKY--DFSAAPTVVAKGSGLLAEKILAVAKENDVLLHQSPELVE-MLSTLELGEEIP 60

Query: 336 PVFYKAVAQLI 346
              Y AVA++I
Sbjct: 61  ESLYLAVAEVI 71


>gi|118443083|ref|YP_877449.1| flagella-associated protein [Clostridium novyi NT]
 gi|118133539|gb|ABK60583.1| flagella-associated protein [Clostridium novyi NT]
          Length = 90

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y +   DAP++ A G   +A K+ + A ++ +P+     LA  L   V + S IP
Sbjct: 9   AAALKY-EMNYDAPIVSAAGMGYVADKIIEEAKKNEVPVVYNKELAE-LLTNVDVGSYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|78067877|ref|YP_370646.1| putative flagellar protein FhlB [Burkholderia sp. 383]
 gi|77968622|gb|ABB10002.1| putative flagellar protein FhlB [Burkholderia sp. 383]
          Length = 105

 Score = 40.4 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P +VAKG   +A+ +   A++  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|217032175|ref|ZP_03437674.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128]
 gi|216946165|gb|EEC24774.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128]
          Length = 164

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 29/175 (16%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREA----SLFSSILACLIYLLFF---FSPGIYSV 58
           A + KTE PS+KKI+ A  EGN P S E      L + +++  I+ +++   FS     V
Sbjct: 2   AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSEMYRHV 61

Query: 59  TSDLHVLLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
             D  +  +  + Q     ++   FLL    L    +V     LF +   G     ++  
Sbjct: 62  LKDFSLDFSKESVQELFNQLAKDTFLLLLPILIILMVVA---FLFNVLQFGWLFAPKV-- 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
                ++P F +++   G+K ++S+  L++           G++IT+ +   +F+
Sbjct: 117 -----IEPKFSKINPINGVKNLFSLKKLLD-----------GSLITLKVFLVFFS 155


>gi|221199692|ref|ZP_03572735.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2M]
 gi|221208703|ref|ZP_03581703.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2]
 gi|221215527|ref|ZP_03588490.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD1]
 gi|221164515|gb|EED96998.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD1]
 gi|221171514|gb|EEE03961.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2]
 gi|221179931|gb|EEE12335.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2M]
          Length = 105

 Score = 40.0 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     D AP +VAKG   +A+ +   A E  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKEAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|207109322|ref|ZP_03243484.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query: 6  APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF 51
          A + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF
Sbjct: 2  AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFF 47


>gi|288555870|ref|YP_003427805.1| FlhB protein [Bacillus pseudofirmus OF4]
 gi|288547030|gb|ADC50913.1| FlhB protein [Bacillus pseudofirmus OF4]
          Length = 99

 Score = 40.0 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           I   PT  A  +RY + +  AP +VA+G+  +A ++ ++A++++I + E+ +L  +L   
Sbjct: 14  IQNGPT--AAVIRYDKEDGSAPKVVAQGRGQLANQIIQLAHKNDIHMQEDATLVSNLL-D 70

Query: 328 VPINSAIPPVFYKAVAQLIYKI 349
           + +   IPP  Y  +A+++  I
Sbjct: 71  MDLGDNIPPQLYSVMAEILLLI 92


>gi|150019417|ref|YP_001311671.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052]
 gi|149905882|gb|ABR36715.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052]
          Length = 86

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A AL+Y +  +DAPV+ A G   IA K+ + A ++ +PI     L   L   V +
Sbjct: 2   NQRKKAAALKY-EFNSDAPVVTAAGMGHIADKIIEKATQNEVPIVYNKELT-DLLCNVDV 59

Query: 331 NSAIPPVFYKAVAQLI 346
              IP   Y+AVA +I
Sbjct: 60  GDEIPTELYEAVAHVI 75


>gi|317009220|gb|ADU79800.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7]
          Length = 61

 Score = 40.0 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 27/49 (55%)

Query: 6  APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG 54
          A + KTE PS+KKI+ A  EGN P S E      +LA LI +  F   G
Sbjct: 2  AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFLYGG 50


>gi|74317194|ref|YP_314934.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056689|gb|AAZ97129.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 118/272 (43%), Gaps = 40/272 (14%)

Query: 3   ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
           END   ++TE  S+++++DA   G+ P S E + +  +LA  I +L +  P    +   L
Sbjct: 4   ENDL--SRTEPASARRLQDARAAGDVPRSSEFAAWLVLLAA-IGVLSWQGP---RLLGSL 57

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSA----------SRLVIPGLLLFMMFGIGSYLI 112
             L+A+A Q   +  S  V      +L A          + L+ P LL   ++  GS+  
Sbjct: 58  QTLVATALQHAAKPFSPAVVEAVGSALWAVLPVLGAVFVAALIAPLLLSRWVYAPGSHPR 117

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
           +R P                   + R++S++++ +   + +K+ L    +  +   +   
Sbjct: 118 RRHPF----------------HAVARLFSLDSVADLALTLLKVALAALAVWWAFGASTPG 161

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           +    +    +    A   +   ++ ++  +A +  LD GW + ++  +  M+ QE+  E
Sbjct: 162 IAALDAIAADAAPEAAAGWLGHGVLALVAGLALVAALDAGWQWLRYLRRHAMTWQEVLAE 221

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
            +++  +P I        R+++R +  +A +R
Sbjct: 222 AREAEVHPEI--------RAQLRGRQQQAGAR 245


>gi|302338392|ref|YP_003803598.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293]
 gi|301635577|gb|ADK81004.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293]
          Length = 84

 Score = 40.0 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +    AP + AKG    AK++  +A +H +P+  +  L + L+    + + IP
Sbjct: 5   AIALAYDRDTYSAPRITAKGSGEAAKRLIALAKKHGVPVMGDEELVQRLY-LFDLEAVIP 63

Query: 336 PVFYKAVAQL 345
              Y+ VA++
Sbjct: 64  EDLYEVVAEI 73


>gi|167585157|ref|ZP_02377545.1| putative flagellar protein FhlB [Burkholderia ubonensis Bu]
          Length = 105

 Score = 39.7 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDA-PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     DA P ++AKG   +A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDAKGGDAAPRVIAKGYGAVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|150021423|ref|YP_001306777.1| flagellar protein FhlB-like protein [Thermosipho melanesiensis
           BI429]
 gi|149793944|gb|ABR31392.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Thermosipho melanesiensis BI429]
          Length = 89

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           ++ T+    A+AL+Y    +  P +VAKG+  +A+K+ ++A +  +PI     +   LFK
Sbjct: 1   MVYTSREKLAVALKYNPKTDFVPFVVAKGKEEVAEKIMELAKKSGVPIVRSSKIVGELFK 60

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +   IP   Y  +A++I  I  +K
Sbjct: 61  -LNVLEEIPEKMYVVIAEIIAFIQSQK 86


>gi|161526225|ref|YP_001581237.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC
           17616]
 gi|189349061|ref|YP_001944689.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
           17616]
 gi|160343654|gb|ABX16740.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC
           17616]
 gi|189333083|dbj|BAG42153.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
           17616]
          Length = 105

 Score = 39.7 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTEND-APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     D AP +VAKG   +A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           PP  Y+AVA L+  +Y
Sbjct: 68  PPQLYQAVADLLAWLY 83


>gi|317012580|gb|ADU83188.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
          Lithuania75]
          Length = 61

 Score = 39.3 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 6  APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPG 54
          A + KTE PS+KKI+ A  EGN P S E      +LA L+ +  F   G
Sbjct: 2  AEEEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFLYGG 50


>gi|153933699|ref|YP_001382583.1| hypothetical protein CLB_0219 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935408|ref|YP_001386136.1| hypothetical protein CLC_0233 [Clostridium botulinum A str. Hall]
 gi|153938549|ref|YP_001389542.1| hypothetical protein CLI_0242 [Clostridium botulinum F str.
           Langeland]
 gi|168177512|ref|ZP_02612176.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|170757316|ref|YP_001779806.1| hypothetical protein CLD_0601 [Clostridium botulinum B1 str. Okra]
 gi|170761762|ref|YP_001785507.1| hypothetical protein CLK_3357 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947401|ref|YP_002802492.1| hypothetical protein CLM_0228 [Clostridium botulinum A2 str. Kyoto]
 gi|152929743|gb|ABS35243.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931322|gb|ABS36821.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|152934445|gb|ABS39943.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|169122528|gb|ACA46364.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|169408751|gb|ACA57162.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670835|gb|EDT82809.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226844528|gb|ACO87194.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|295317640|gb|ADF98017.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
 gi|322804447|emb|CBZ01997.1| flagellar biosynthesis related protein [Clostridium botulinum
           H04402 065]
          Length = 86

 Score = 39.3 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A AL+Y ++   +PV+ A G   +A K+ + A E  +PI  +  LA +L   + I
Sbjct: 2   NERKKAAALKYEESYT-SPVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDI 59

Query: 331 NSAIPPVFYKAVAQLI 346
             +IP   Y AVA++I
Sbjct: 60  GDSIPYELYDAVAKVI 75


>gi|168185551|ref|ZP_02620186.1| flagella-associated protein [Clostridium botulinum C str. Eklund]
 gi|169296547|gb|EDS78680.1| flagella-associated protein [Clostridium botulinum C str. Eklund]
          Length = 90

 Score = 39.3 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y +   DAP++ A G   +A K+ + A +  +P+     LA  L   V + S IP
Sbjct: 9   AAALKY-EMNYDAPIVSAAGMGHVADKIIEEAEKSEVPVVYNKELAE-LLTNVDVGSYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|330874619|gb|EGH08768.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 234

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 45/256 (17%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++       L  L+ L+         V S++ + LA 
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQD-------LGKLLVLM---------VVSEITLGLAD 46

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPG-----LLLFMMFGIGSYLIQRIPV------ 117
            +  +L+ +  + F     S +AS  +I       LL F +  +G  ++ R+        
Sbjct: 47  DSVDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSSWMQIG 106

Query: 118 ---------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                    L++N + P F         K+++S  N++N + S +K + +G  + + +  
Sbjct: 107 FLFAPKALKLDINKINP-FSHA------KQMFSGQNILNLLLSILKAVAIGATLYMQVKP 159

Query: 169 NYFTMLDFISANPHSILYHAFFTV-RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
               ++  ++ +  +  +HA   + R +L +IL  +  + ++D     +    KL+MS +
Sbjct: 160 ALGALI-LLANSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHE 218

Query: 228 EIKDEIKQSYGNPIIK 243
           +IK E KQS G+P +K
Sbjct: 219 DIKKEYKQSEGDPHVK 234


>gi|301026126|ref|ZP_07189600.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 196-1]
 gi|299879821|gb|EFI88032.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 196-1]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 8/150 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK    
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV 158
            ++   G+KRI+ +  +   +K+ + II +
Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFL 144


>gi|127512324|ref|YP_001093521.1| FlhB domain-containing protein [Shewanella loihica PV-4]
 gi|126637619|gb|ABO23262.1| FlhB domain protein [Shewanella loihica PV-4]
          Length = 118

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PT  A ALRY      AP + AKG++L+A+++  IA E  I I ++ +L+ +  +++ I 
Sbjct: 23  PTQ-AAALRY--DGKLAPQITAKGEDLVAEEIIAIAKEAGIYIHQDANLS-NFLQKLEIG 78

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y  +A+LI  +Y
Sbjct: 79  EEIPKELYLLIAELIAFVY 97


>gi|323155905|gb|EFZ42072.1| escU domain protein [Escherichia coli EPECa14]
          Length = 55

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 206 LTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ +
Sbjct: 8   FSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL 51


>gi|304404391|ref|ZP_07386052.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9]
 gi|304346198|gb|EFM12031.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9]
          Length = 588

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 14/131 (10%)

Query: 50  FFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGS 109
            F+ G+  VT  L+   A + +R  +DI      +T  +LS    V+ G+ +  MF +  
Sbjct: 167 LFAIGLGIVTFLLNTAFAGSFRRINDDIQRGAGKMTQ-ALSD---VLAGMPIVKMFALDR 222

Query: 110 YLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK---SFVKIILVGTIITISL 166
            +I++    N N    S KRV       R Y++ ++VN +    SFV I+++G ++ ++ 
Sbjct: 223 IIIRKYDDTNANVANLSIKRV-------RKYAVLDIVNSIMGSLSFVGIVIIGGVMALNK 275

Query: 167 TENYFTMLDFI 177
             ++ T++ F+
Sbjct: 276 GTDFGTVMAFV 286


>gi|224372061|ref|YP_002606226.1| hypothetical protein HRM2_p00680 [Desulfobacterium autotrophicum
           HRM2]
 gi|223694780|gb|ACN18062.1| hypothetical protein HRM2_p00680 [Desulfobacterium autotrophicum
           HRM2]
          Length = 381

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK-----QEIKDEIKQSYG 238
           ++  +F+T RK+ ++I +F+  +T +      HQWY+  +++K     +EI   + Q+  
Sbjct: 1   MINKSFYTQRKIKLIISIFLC-VTAISTTTGCHQWYTAYEINKGQLRSREILPNLIQALD 59

Query: 239 NPIIKNRQKSIAR-SRIRHKMMEATSRATIII-----TNPTHYALAL 279
           +P  + R+ ++ R SR++    EA  +  I+       +  HYA+ +
Sbjct: 60  DPKPRTRRAALQRISRLKLSAQEAIPKVVILAKTDDDEDTRHYAIKV 106


>gi|83309712|ref|YP_419976.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Magnetospirillum magneticum AMB-1]
 gi|82944553|dbj|BAE49417.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Magnetospirillum magneticum AMB-1]
          Length = 117

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P + A G+  +A+++ ++A+ H + +  +P LA  L   V +++ IP   + AVA+++  
Sbjct: 41  PTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTVIPVEAFVAVAEILAY 99

Query: 349 IY 350
           +Y
Sbjct: 100 VY 101


>gi|23016629|ref|ZP_00056383.1| COG2257: Uncharacterized homolog of the cytoplasmic domain of
           flagellar protein FhlB [Magnetospirillum magnetotacticum
           MS-1]
          Length = 117

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P + A G+  +A+++ ++A+ H + +  +P LA  L   V +++ IP   + AVA+++  
Sbjct: 41  PTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTVIPVEAFVAVAEILAY 99

Query: 349 IY 350
           +Y
Sbjct: 100 VY 101


>gi|88800022|ref|ZP_01115593.1| FlhB domain protein [Reinekea sp. MED297]
 gi|88777300|gb|EAR08504.1| FlhB domain protein [Reinekea sp. MED297]
          Length = 112

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A  L+Y       P++ A G+N  A++M ++A    +P++E+  LA ++  Q+ +  
Sbjct: 6   TTRAATLKY--KGRKTPIISALGKNEQAEEMIQLAKACGVPVYEDEDLA-AILSQLDVGQ 62

Query: 333 AIPPVFYKAVAQLI 346
           AIP   Y+ VA ++
Sbjct: 63  AIPAELYEWVASVL 76


>gi|256024635|ref|ZP_05438500.1| surface presentation of antigens protein SpaS [Escherichia sp.
           4_1_40B]
          Length = 130

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60

Query: 318 PSLARSLF 325
             LAR ++
Sbjct: 61  KKLARKIY 68


>gi|309703218|emb|CBJ02553.1| type III secretion system protein [Escherichia coli ETEC H10407]
          Length = 130

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60

Query: 318 PSLARSLF 325
             LAR ++
Sbjct: 61  KKLARKIY 68


>gi|315185654|gb|EFU19422.1| type III secretion exporter [Spirochaeta thermophila DSM 6578]
          Length = 104

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   E  AP ++AKG+   A  + ++A EH IPI E   +AR  +      + IP
Sbjct: 16  AVAMKY-TPELPAPFVIAKGRGKTADLILELAREHRIPIVEH-RIAREGYDLFLPGTYIP 73

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA +   +Y
Sbjct: 74  EDLYEVVATIFAFVY 88


>gi|168182211|ref|ZP_02616875.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|237793498|ref|YP_002861050.1| hypothetical protein CLJ_B0225 [Clostridium botulinum Ba4 str. 657]
 gi|182674642|gb|EDT86603.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|229261705|gb|ACQ52738.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 86

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N    A AL+Y ++   +PV+   G   +A K+ + A E  +PI  +  LA +L   + I
Sbjct: 2   NERKKAAALKYEESYT-SPVVTVAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDI 59

Query: 331 NSAIPPVFYKAVAQLI 346
             +IP   Y AVA++I
Sbjct: 60  GDSIPYELYDAVAKVI 75


>gi|160901650|ref|YP_001567231.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95]
 gi|160359294|gb|ABX30908.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95]
          Length = 87

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY Q  + AP +VAKG + IA+++ +IA E NIPI +    A   F  + ++  IP
Sbjct: 7   AVALRYKQGTDQAPKVVAKGIDSIARRIIEIAEEENIPIVKSEK-AVEEFYGLDLDEEIP 65

Query: 336 PVFYKAVAQLI 346
           P  Y+  A++I
Sbjct: 66  PELYELAAEII 76


>gi|296283248|ref|ZP_06861246.1| flagellar biosynthetic protein FlhB [Citromicrobium bathyomarinum
           JL354]
          Length = 66

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           IA +++IPI E+P LAR+L     ++  IP   Y AVA++I
Sbjct: 15  IAKDNDIPIIEKPPLARALHASAKLDQPIPAEHYLAVAEII 55


>gi|85712296|ref|ZP_01043347.1| Uncharacterized conserved protein, related to C-terminal FlhB
           domain [Idiomarina baltica OS145]
 gi|85693923|gb|EAQ31870.1| Uncharacterized conserved protein, related to C-terminal FlhB
           domain [Idiomarina baltica OS145]
          Length = 91

 Score = 37.4 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP ++AKG + +A+++ ++A  H + + E+P L+ SL  ++ +   IP   Y  +A+LI
Sbjct: 18  NAPQVIAKGFDELAEEIIEVAKAHGVMVHEDPMLSDSL-ARLNVGEEIPRELYVLIAELI 76


>gi|114563973|ref|YP_751487.1| FlhB domain-containing protein [Shewanella frigidimarina NCIMB 400]
 gi|114335266|gb|ABI72648.1| FlhB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 104

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP + A G++L+A++M  IA E  I I ++P L+  L + + +   +P   Y  +A+LI 
Sbjct: 22  APKITATGKDLVAEEMILIAKEAGIHIHQDPHLSEFL-QLLELGDEVPKELYLLIAELIA 80

Query: 348 KIY 350
            +Y
Sbjct: 81  FVY 83


>gi|229916629|ref|YP_002885275.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp.
           AT1b]
 gi|229468058|gb|ACQ69830.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp.
           AT1b]
          Length = 96

 Score = 37.0 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
           ++ M+ T R T         A  +RY +T + APV+VA+G   +A+K+ + A    + + 
Sbjct: 2   YQRMDLTKRKT---------AAVVRYDETTDKAPVVVARGTGAVAEKILQEARARGVAVE 52

Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            + SL   L   + +  AIPP  Y  +A+++  I
Sbjct: 53  NDHSLLGHL-LDLDLGDAIPPQLYDVMAEVLLLI 85


>gi|167949063|ref|ZP_02536137.1| flagellar biosynthesis protein FlhB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 67

 Score = 37.0 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +PI E P LAR+++    +N +IP   Y AVA+L+  ++  K
Sbjct: 1   MPIIESPMLARAIYFSTELNESIPAGLYLAVAKLLAYVFQLK 42


>gi|256019343|ref|ZP_05433208.1| surface presentation of antigens protein SpaS [Shigella sp. D9]
          Length = 130

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I+NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60

Query: 318 PSLARSLF 325
             LAR  +
Sbjct: 61  KKLARKNY 68


>gi|300820657|ref|ZP_07100808.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7]
 gi|309793918|ref|ZP_07688343.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7]
 gi|300526921|gb|EFK47990.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7]
 gi|308122325|gb|EFO59587.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7]
          Length = 55

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 13/61 (21%)

Query: 195 VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
           ++++I  FIA          Y  +   +KM KQE+K E K+  GNP IK+++    R RI
Sbjct: 2   IIVLIFDFIA---------EYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKR----RERI 48

Query: 255 R 255
           R
Sbjct: 49  R 49


>gi|254785931|ref|YP_003073360.1| FlhB domain-containing protein [Teredinibacter turnerae T7901]
 gi|237687521|gb|ACR14785.1| FlhB domain protein [Teredinibacter turnerae T7901]
          Length = 95

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP + AKG    A+++ +IA E  +P+ +   L   L  Q+ +  +IP
Sbjct: 9   AVALFY--DGESAPTITAKGSGEQAEEILRIAREAEVPLCDNGPLVE-LLSQLELGDSIP 65

Query: 336 PVFYKAVAQLIYKIYH 351
              Y AVA +I   Y 
Sbjct: 66  KELYIAVAHIIAFAYQ 81


>gi|209920313|ref|YP_002294397.1| putative type III secretion protein [Escherichia coli SE11]
 gi|209913572|dbj|BAG78646.1| putative type III secretion protein [Escherichia coli SE11]
          Length = 130

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I+NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60

Query: 318 PSLARSLF 325
             LAR  +
Sbjct: 61  KKLARKNY 68


>gi|307718745|ref|YP_003874277.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM
           6192]
 gi|306532470|gb|ADN02004.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM
           6192]
          Length = 104

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   E  AP ++AKG+   A  +  +A EH IP+ E   +AR  +      + +P
Sbjct: 16  AVAMKY-TPELPAPFVIAKGRGKTADLILDLAREHRIPVVEH-RIAREGYDLFLPGTYVP 73

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA +   +Y
Sbjct: 74  EDLYEVVATIFAFVY 88


>gi|153956205|ref|YP_001396970.1| hypothetical protein CKL_3609 [Clostridium kluyveri DSM 555]
 gi|219856530|ref|YP_002473652.1| hypothetical protein CKR_3187 [Clostridium kluyveri NBRC 12016]
 gi|146349063|gb|EDK35599.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570254|dbj|BAH08238.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 88

 Score = 36.6 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y  T  +AP++ A G   IA  +   A E N+PI  +  L  +L   V +  +IP
Sbjct: 7   AVALKYEPTY-EAPMVTAAGIGQIADNILNKARESNVPIVYDRELT-NLLSNVDVGDSIP 64

Query: 336 PVFYKAVAQLI 346
              Y  VA++I
Sbjct: 65  VELYDVVAKVI 75


>gi|218709485|ref|YP_002417106.1| hypothetical protein VS_1494 [Vibrio splendidus LGP32]
 gi|218322504|emb|CAV18663.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 293

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 15/107 (14%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAP---ISREASLFSSI---LACLIYLLFFFSPGIY-- 56
           D P N  +  + K +ED LN+ N     IS +    +S+   +A L Y      PG Y  
Sbjct: 180 DEPTNNLDMDTIKWLEDTLNQRNCTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDE 239

Query: 57  ---SVTSDLHVLLASATQRKLEDI----SHIVFLLTHLSLSASRLVI 96
              + T     LL+   +RK + +    S++V LLTHL  S  RLV+
Sbjct: 240 YMTAATQARERLLSETLRRKHKLLNFKRSYLVSLLTHLKRSKQRLVL 286


>gi|187918556|ref|YP_001884119.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
 gi|119861404|gb|AAX17199.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
          Length = 86

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA-- 333
           AL ++Y  T+  AP ++AK +   A +++++A +  IPI E+  L+ SLF    IN    
Sbjct: 7   ALLIKY-DTKFPAPFILAKARGEKALRIKELAKQEGIPIVEDKYLSESLF---LINEGDF 62

Query: 334 IPPVFYKAVAQLIYKIYHKK 353
           I   ++K VAQ++  +Y  K
Sbjct: 63  IDFKYFKVVAQILSVVYKLK 82


>gi|157961216|ref|YP_001501250.1| FlhB domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157846216|gb|ABV86715.1| FlhB domain protein [Shewanella pealeana ATCC 700345]
          Length = 102

 Score = 36.2 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NP   A+AL Y      AP + AKG++ +A+++  +A +  IPI ++  L     +++ +
Sbjct: 6   NPKK-AVALSY--QPGTAPKVSAKGEDRLAEEIIALAQQAGIPIHQDEYLC-DFLQRLEV 61

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y  +A+LI  +Y
Sbjct: 62  GDEIPSELYLLIAELIAFVY 81


>gi|170726000|ref|YP_001760026.1| FlhB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169811347|gb|ACA85931.1| FlhB domain protein [Shewanella woodyi ATCC 51908]
          Length = 104

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL +    N+AP + AKG  LIA+++  +A E  I I +   L+ +  + + +  
Sbjct: 9   TQQAVALGF--DGNNAPKVTAKGSGLIAEEIISVAKEAGIHIHKNADLS-NFLQNLELGD 65

Query: 333 AIPPVFYKAVAQLIYKIY 350
            IP   Y  +A++I   Y
Sbjct: 66  EIPKELYLLIAEIIAFAY 83


>gi|1196944|gb|AAD15121.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 154

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 45/89 (50%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +P 
Sbjct: 62  LQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAESPI 121

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDI 211
             + +A   V    ++++L +  +   D+
Sbjct: 122 VAMGNALDLVGLCALLVVLGVIPMVGFDV 150


>gi|332305476|ref|YP_004433327.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172805|gb|AEE22059.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 110

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 276 ALALRYIQTEN-DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+AL++ + +N +AP +VAKG   +A ++  +A +  + I E+P L+  L   + +   I
Sbjct: 15  AVALKHNEGDNKNAPQVVAKGFGELADEIIALAKQSGVLIHEDPYLSEFL-ASLDLGQEI 73

Query: 335 PPVFYKAVAQLI 346
           P   Y  +A+LI
Sbjct: 74  PEELYHVIAELI 85


Searching..................................................done


Results from round 2




>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040367|gb|ACT57163.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 354

 Score =  416 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS
Sbjct: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL
Sbjct: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN
Sbjct: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP
Sbjct: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA
Sbjct: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI
Sbjct: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354


>gi|168238548|ref|ZP_02663606.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734592|ref|YP_002114950.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204931016|ref|ZP_03221842.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710094|gb|ACF89315.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288673|gb|EDY28048.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320060|gb|EDZ05265.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322616914|gb|EFY13822.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618152|gb|EFY15044.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625823|gb|EFY22642.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626275|gb|EFY23085.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632689|gb|EFY29434.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639033|gb|EFY35726.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640473|gb|EFY37126.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646018|gb|EFY42535.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649560|gb|EFY45992.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655468|gb|EFY51776.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660247|gb|EFY56485.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662928|gb|EFY59135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668113|gb|EFY64272.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674127|gb|EFY70221.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675519|gb|EFY71593.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683067|gb|EFY79083.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686761|gb|EFY82739.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195348|gb|EFZ80528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199240|gb|EFZ84335.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204035|gb|EFZ89050.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207496|gb|EFZ92444.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217480|gb|EGA02199.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221971|gb|EGA06361.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224718|gb|EGA08987.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231502|gb|EGA15615.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235944|gb|EGA20023.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240514|gb|EGA24557.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245406|gb|EGA29406.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323250177|gb|EGA34069.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253625|gb|EGA37453.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255054|gb|EGA38842.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260286|gb|EGA43907.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266878|gb|EGA50364.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270708|gb|EGA54149.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 383

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  N+  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHNWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|307131618|ref|YP_003883634.1| flagellar biosynthesis protein flhB [Dickeya dadantii 3937]
 gi|306529147|gb|ADM99077.1| Flagellar biosynthesis protein flhB [Dickeya dadantii 3937]
          Length = 383

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D+   KTEAP+ ++ E A  EG  P SRE +    ++A L  L    S     +T 
Sbjct: 1   MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSRELTSVLMLIAGLAILWGSGSGMAARLTD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + D   I+  +  L   A   ++P L   ++  + + ++    + + 
Sbjct: 60  MMAKGLI-FDHNFISDERLIISHVGSLIEQAVMALVPILFGLVLVALAAPVLLGGLIFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F +++   G+KR++S + L    K+ +K ++VG I    L  N+ +ML  +S  
Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTHVLAELFKAILKAVIVGCITFWFLKHNWNSMLHLVSEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +  A          ++L +  +   D+GW       +L+MSKQEI+DE K+  G+P
Sbjct: 179 LGSAIKDALNIAFLCCFWVILGLFPMVAFDVGWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG + IA
Sbjct: 239 HVKGRVRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMHAPKVLAKGADQIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IPI E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGSEHRIPILEAPPLARALYRHTEIGHHIPTGLYAAVAEVLSWVYQLK 351


>gi|16760863|ref|NP_456480.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141445|ref|NP_804787.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163285|ref|ZP_03348995.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426385|ref|ZP_03359135.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583527|ref|ZP_03365353.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|289824043|ref|ZP_06543641.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25322221|pir||AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503160|emb|CAD05665.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137072|gb|AAO68636.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 383

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|16765256|ref|NP_460871.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161613526|ref|YP_001587491.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994220|ref|ZP_02575312.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234020|ref|ZP_02659078.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168462551|ref|ZP_02696482.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820742|ref|ZP_02832742.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445536|ref|YP_002041180.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194472731|ref|ZP_03078715.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197251527|ref|YP_002146107.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|238912509|ref|ZP_04656346.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|729522|sp|P40727|FLHB_SALTY RecName: Full=Flagellar biosynthetic protein flhB
 gi|633115|dbj|BAA06902.1| flagellar protein FlhB [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16420451|gb|AAL20830.1| putative part of export apparatus for flagellar proteins
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|161362890|gb|ABX66658.1| hypothetical protein SPAB_01246 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404199|gb|ACF64421.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194459095|gb|EDX47934.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634185|gb|EDX52537.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197215230|gb|ACH52627.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205327877|gb|EDZ14641.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331965|gb|EDZ18729.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205342676|gb|EDZ29440.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261247084|emb|CBG24905.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993900|gb|ACY88785.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912908|dbj|BAJ36882.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085466|emb|CBY95247.1| Flagellar biosynthetic protein flhB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224557|gb|EFX49620.1| Flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|332988807|gb|AEF07790.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 383

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|161502970|ref|YP_001570082.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864317|gb|ABX20940.1| hypothetical protein SARI_01032 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 383

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTE P+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEDPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  N+  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGSYLWHNWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PITAMGNALNLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYEENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|311279222|ref|YP_003941453.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1]
 gi|308748417|gb|ADO48169.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae SCF1]
          Length = 387

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/352 (29%), Positives = 190/352 (53%), Gaps = 1/352 (0%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           ++N   ++KTEAP+ ++++ A  EG  P SRE +    +L  +  L F        + + 
Sbjct: 5   ADNSDSEDKTEAPTPQRLDKAREEGQIPRSRELTSLLILLVGVCVLWFGGESMARRLAAL 64

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L   L       + D + I+  +  L   A   ++P +   ++  I + ++    V +  
Sbjct: 65  LSSGL-HFDHSIVNDPNLILGQIILLIKQAMLALLPLITGVVVVAIVAPMMLGGLVFSPK 123

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +   F +++   GIKR++S  +    +K+ +K +LVG +    +  ++  M+  IS +P
Sbjct: 124 SLAFKFDKLNPLPGIKRLFSAQSAAELLKAILKSVLVGCVAGTYVWSHWPDMMRLISESP 183

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + + +A   V    +++ L +  +   D+ W  H    KL+MS+Q+I+DE KQ+ G+P 
Sbjct: 184 LAAMGNALNMVGLCAMLVALGVIPMVGFDVFWQIHSHIKKLRMSRQDIRDEFKQNEGDPH 243

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K R + + R+  R +MM    +A +I+TNPTHY++AL+Y++ +  AP +VAKG  LIA 
Sbjct: 244 VKGRIRQMQRAAARRRMMGDVPKADVIVTNPTHYSVALQYVEGKMSAPKVVAKGAGLIAL 303

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++R+I  EH +P+ E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 304 RIREIGQEHRVPVLEAPPLARALYRHAEIGQQIPGTLYAAVAEVLAWVWQLK 355


>gi|218548562|ref|YP_002382353.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ATCC
           35469]
 gi|218356103|emb|CAQ88720.1| flagellar export pore protein [Escherichia fergusonii ATCC 35469]
 gi|324113614|gb|EGC07589.1| flagellar biosynthetic protein FlhB [Escherichia fergusonii B253]
 gi|325496979|gb|EGC94838.1| flagellar biosynthesis protein FlhB [Escherichia fergusonii ECD227]
          Length = 382

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 186/350 (53%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        + + L 
Sbjct: 2   SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSMLILLVGVCVIWFGGESLARQLAAMLS 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + D + I+  +  L   A   ++P +   ++  + S ++    + +   +
Sbjct: 62  AGL-HFDHHLINDPNLILGQIILLIKQAMMALLPLITGVVLVALISPVLLGGLIFSGKSL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P F +++   GIKR++S       +K+ +K  LVG +    L   +  M+  ++ +P +
Sbjct: 121 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGCVAGFYLWHKWPEMMRLMAQSPIT 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K
Sbjct: 181 AMGNALDLVGLCALLVVLGVIPMVGFDVFYQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP ++AKG  L+A ++
Sbjct: 241 GRIRQMQRAAARRRMMNDVPQADVIVNNPTHYSVALQYDENKMSAPKVIAKGAGLVALRI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R+IA EH+IP  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 301 REIAAEHHIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|271500057|ref|YP_003333082.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586]
 gi|270343612|gb|ACZ76377.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech586]
          Length = 383

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D+   KTEAP+ ++ E A  EG  P S+E +    ++A L  L  + S     ++ 
Sbjct: 1   MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGSSMAGRLSD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + D   I+  +  L   A   ++P L   ++  +G+ ++    + + 
Sbjct: 60  MMAKGLI-FDHGFINDERLIISHVGTLLEQAVLALVPILFGLVLVALGAPILLGGLIFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F +++   G+KR++S   L    K+ +K ++VG I    L  N+ +ML  +S  
Sbjct: 119 KAISFDFGKMNPLSGLKRMFSTQVLAELFKAILKAVIVGLITFWFLRHNWNSMLHLVSEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A          ++L +  +   D+ W       +L+MSKQEI+DE K+  G+P
Sbjct: 179 MGMAIKDALNIAFLCCFWVILGLFPMVGFDVAWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IKNR +   R+  + +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG + IA
Sbjct: 239 HIKNRIRQQQRAMAQRRMMSDVPKADVIVTNPTHYAVALKYDEKKMSAPRVLAKGADRIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R++  E+ IPI E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 QRIRELGTENRIPILEAPPLARALYRHTEIGQQIPTGLYAAVAEVLSWVYQLK 351


>gi|62180491|ref|YP_216908.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583582|ref|YP_002637380.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62128124|gb|AAX65827.1| putative part of export apparatus for flagellar proteins
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468109|gb|ACN45939.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714967|gb|EFZ06538.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 383

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIRELGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|167552446|ref|ZP_02346199.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168241547|ref|ZP_02666479.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259807|ref|ZP_02681780.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194451224|ref|YP_002045968.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|200389783|ref|ZP_03216394.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207856565|ref|YP_002243216.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|194409528|gb|ACF69747.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|199602228|gb|EDZ00774.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322918|gb|EDZ10757.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205339229|gb|EDZ25993.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350661|gb|EDZ37292.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708368|emb|CAR32672.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 383

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|323977935|gb|EGB73021.1| flagellar biosynthetic protein FlhB [Escherichia coli TW10509]
          Length = 382

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHNIINDPNLILGQIILLIREAMLGLLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMNDVPKADVIVNNPTHYSVALQYDEHKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|56413166|ref|YP_150241.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362092|ref|YP_002141729.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127423|gb|AAV76929.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093569|emb|CAR59032.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 383

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  I+  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 351


>gi|260598364|ref|YP_003210935.1| flagellar biosynthetic protein flhB [Cronobacter turicensis z3032]
 gi|260217541|emb|CBA31747.1| Flagellar biosynthetic protein flhB [Cronobacter turicensis z3032]
          Length = 392

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/350 (30%), Positives = 184/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  + E A  EG  P SRE +    +L  +  +    S     + + L 
Sbjct: 12  SDDSDDKTEAPTPHRREKAREEGQIPRSRELTSMLMLLVGVAVIWMGGSLLARQLAAMLS 71

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + D   +V  ++ L   A   ++P ++  ++  + + ++    + N   V
Sbjct: 72  HGL-HFDHSIINDPKLVVGQISFLIKQALVALVPLIMGVVIVALFAPMLLGGLLFNTKAV 130

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
               ++++   GIKRI+S  +L   +K+ +K +LVG +    L  N+  M+  IS +P S
Sbjct: 131 AFKPEKLNPLPGIKRIFSSQSLAELLKAVLKSVLVGIVTGCFLWYNWPDMMRLISESPIS 190

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            + +A   V    I+I++ +  +   D+ W       KL+MS+Q+I+DE K   G+P +K
Sbjct: 191 AMRNAMNLVALCCILIVMGLVPMVGFDVFWQIVSHTKKLRMSRQDIRDEFKNQEGDPHVK 250

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R   R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG  L+A ++
Sbjct: 251 GRIRQQQREAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 310

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R+I  EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 311 REIGNEHRIPMLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 360


>gi|198245714|ref|YP_002215169.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197940230|gb|ACH77563.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 383

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 191/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y +++  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|197265115|ref|ZP_03165189.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243370|gb|EDY25990.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 383

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESEDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|283832722|ref|ZP_06352463.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
 gi|291072402|gb|EFE10511.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
          Length = 383

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 188/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P S+E +    +L  +  +          +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGLR-FDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG++    L  N+  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHNWPEMMRLVAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +  +    KL+MS+Q+I+DE KQS G+P
Sbjct: 179 PITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHLKKLRMSRQDIRDEFKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   +A
Sbjct: 239 HVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGPVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|326622917|gb|EGE29262.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 383

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 191/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWYHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y +++  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDESKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLSWVWQLK 351


>gi|301158434|emb|CBW17943.1| flagellar biosynthetic protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|323130198|gb|ADX17628.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 383

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVIDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|251789159|ref|YP_003003880.1| flagellar biosynthesis protein FlhB [Dickeya zeae Ech1591]
 gi|247537780|gb|ACT06401.1| flagellar biosynthetic protein FlhB [Dickeya zeae Ech1591]
          Length = 383

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D+   KTEAP+ ++ E A  EG  P S+E +    ++A L  L  + S     +T 
Sbjct: 1   MAD-DSDLEKTEAPTPQRTEKAREEGQIPRSKELTSVFMLIAGLAILWGYGSSMAGKLTD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + D    +  +  L   A   ++P L   ++  + + ++    + + 
Sbjct: 60  MMAKGLI-FDHNLISDERLFISHVGALLKQAMLAIVPILFGLVLVALAAPVLLGGLIFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F +++   G+KR++S + L    K+ +K ++VG I    L  N+ +ML  +S  
Sbjct: 119 KAISFDFGKLNPLSGLKRMFSTHVLAELFKAILKAVIVGCITYWFLLHNWNSMLHLVSEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A          +++ +  +   D+ W       +L+MSKQEI+DE K+  G+P
Sbjct: 179 MGIAIKDALNIAFLCCFWVIMGLFPMVAFDVAWQIWSHIKRLRMSKQEIRDEYKEHEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R+  + +MM    +A +I+TNPTHYA+AL+Y + + +AP ++AKG + +A
Sbjct: 239 HIKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALKYDEKKMNAPKVLAKGADRVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R++  E+ +PI E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 QRIRELGAENRVPILEAPPLARALYRHTEIGQQIPAGLYAAVAEVLSWVYQLK 351


>gi|237731916|ref|ZP_04562397.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2]
 gi|226907455|gb|EEH93373.1| flagellar biosynthesis protein FlhB [Citrobacter sp. 30_2]
          Length = 383

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P S+E +    +L  +  +          +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGLR-FDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG++    L  N+  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHNWPAMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +  +    KL+MS+Q+I+DE KQS G+P
Sbjct: 179 PITAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHVKKLRMSRQDIRDEFKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 239 HVKGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALKYDENKMSAPKVVAKGAGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|157145338|ref|YP_001452657.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC
           BAA-895]
 gi|157082543|gb|ABV12221.1| hypothetical protein CKO_01078 [Citrobacter koseri ATCC BAA-895]
          Length = 383

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P S+E +    +L  +  +          +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQVPRSKELTSLLILLVGVCIIWIGGESLARRLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGLR-FDHSMVNDPNLILGQIILLIKEAMIALLPLITGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG++    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLSGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHHWPEMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+++I+DE K+S G+P
Sbjct: 179 PVTAMGNALDLVGLCALLVVLGVIPMVAFDVVFQIFSHLKKLRMSRKDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 239 HIKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|261340264|ref|ZP_05968122.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317353|gb|EFC56291.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
          Length = 382

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++  D+KTEAP+  ++E A  EG  P SRE +    ++  +  + +        +  
Sbjct: 1   MAEDN--DDKTEAPTPHRLEKAREEGQVPRSRELTSLLILVVGVCIIWWGGESFARRLAG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L  +A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGLR-FDHSMVNDPNLILSQIILLVKNAMIALLPLISGVVLVALVSPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GI +++S       +K+ +K  L+G+     L  ++  M+  IS +
Sbjct: 118 KSLQPKFSKLNPLPGIAKMFSAQTGAELVKAILKSALMGSTAGFFLWHHWPEMMRLISES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L I  +   D+ +  +  + KL+MS+Q+I+DE KQ  G+P
Sbjct: 178 PFNAMNNAMNLVGLCALLVVLSIIPMVGFDVIFQMYSHFKKLRMSRQDIRDEYKQMEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MME   +A +I+TNPTHY++ALRY + +  AP +VAKG  LIA
Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGAGLIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+ +PI E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|296101781|ref|YP_003611927.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056240|gb|ADF60978.1| flagellar biosynthesis protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 382

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +  D+KTEAP+  ++E A  EG  P SRE +    ++  +  + +        +  
Sbjct: 1   MAEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILIVGVCIIWWGGESLARKLAG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGLR-FDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVALISPVMLGGLVFST 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GI +++S       +K+ +K  L+G+     L  N+  M+  IS +
Sbjct: 118 KSLQPKFSKLNPLSGIAKMFSAQTGAELLKAILKAALMGSAAGFYLWHNWPEMMRLISES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L I  +   D+ +  +  + KL+MS+Q+I+DE KQ  G+P
Sbjct: 178 PLTAMSNALNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQMEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+ +PI E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGTENRVPILEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|146312093|ref|YP_001177167.1| flagellar biosynthesis protein FlhB [Enterobacter sp. 638]
 gi|145318969|gb|ABP61116.1| flagellar biosynthetic protein FlhB [Enterobacter sp. 638]
          Length = 382

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 188/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D  D+KTEAP+  +++ A  +G  P SRE +    ++  +  + F        +  
Sbjct: 1   MA--DDSDDKTEAPTPHRLDKAREDGQVPRSRELTSLLILIVGVCIIWFGGGAFANRLAG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 59  MLSAGLR-FDHSIVNDQNLILSQIILLIKNAMIALLPLISGVVLVALVSPIMLGGLIFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GI +++S       +K+ +K  L+G+     L  ++  M+  +S +
Sbjct: 118 KSLQPKFSKLNPFPGIAKMFSAQTGAELLKAILKSTLMGSTAGFYLWHHWPDMMRLLSES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L I  +   D+ +  +    KL+MS+Q+++DE KQ  G+P
Sbjct: 178 PLTAMRNAMDLVGFCAVLVVLSIIPMVGFDVFFQIYSHIKKLRMSRQDLRDEYKQMEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 238 HVKGRIRQMQRAAARRRMMEDVPKADVIVTNPTHYSVALKYDENKMSAPKVVAKGAGLIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+ +P+ E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGSENRVPVLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|212634380|ref|YP_002310905.1| flagellar biosynthesis protein FlhB [Shewanella piezotolerans WP3]
 gi|212555864|gb|ACJ28318.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
          Length = 377

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  +S+K++ A ++G    S++    + ++A  + L+    P I     
Sbjct: 1   MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLVMT-GPSIAKAMH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L + T+ ++ D   ++ + + +    +  ++  +LL  +      +       + 
Sbjct: 60  TIMTNLFTLTRDEIFDTRQMMNIWSMVGSELAAPLLGFILLLAVIAFAGNVALGGMSFSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S   G+KR++ +  +V   K   K  +V     + L      +L     +
Sbjct: 120 KACMPKPSKMSPVAGLKRMFGVQAVVELTKGIAKFSVVAITAYVVLKIYLNDILMLSQDH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +YHA   V  + I++      +  +D+ +       +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNIYHALDLVSWIFILLCASTFIIVAIDVPYQIWHHAKQLKMTKQEVKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + +   + +MM     A +I+ NP HYA+A++Y   ++ AP +VAKG + +A
Sbjct: 240 EVKGRIRQLQQEMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAAKSTAPFVVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH++ I   P LAR+++    I+  IP   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREHDVAIVTAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352


>gi|50120630|ref|YP_049797.1| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611156|emb|CAG74602.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTEAP+ +K E A  EG  P SRE +    ++A L  L          +  
Sbjct: 1   MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWIGGDVMAGRLAR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +     + D + ++  +  L   A   ++P +L  ++  + + ++    + + 
Sbjct: 60  IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAVSALVPIMLGAVLVALSAPMLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S   L    K+ +K ++VG I T+ L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSSQALAELFKAILKSVIVGIISTLFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A         +I++ +  +   D+ W       KL+M+KQEI+DE KQS G+P
Sbjct: 179 PIAALGDALELAVMCGFLIIIGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY   + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351


>gi|253688980|ref|YP_003018170.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755558|gb|ACT13634.1| flagellar biosynthetic protein FlhB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 383

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D+   KTEAP+ +K E A  EG  P SRE +    ++A L  L          +  
Sbjct: 1   MAD-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWIGGDAMAGRLAR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +     + D + ++  +  L   A+  +IP +   ++  + + L+    + + 
Sbjct: 60  IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAASALIPIMFGAVLVALSAPLLLGGVLFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K +FK++    G+KR++S  +L    K+ +K ++VG I T+ L  N+  +L  IS +
Sbjct: 119 KSLKVNFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLISES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P S L  A         +I++ +  +   D+ W       KL+MSKQEI+DE KQS G+P
Sbjct: 179 PISALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY + + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGTEHRVPILEAPPLARALFRHSEIGEHIPAALYAAVAEVLAWVYQLK 351


>gi|157376185|ref|YP_001474785.1| flagellar biosynthesis protein FlhB [Shewanella sediminis HAW-EB3]
 gi|157318559|gb|ABV37657.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
          Length = 377

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 167/353 (47%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + ++ E +  +G    S+E    + ++A  +       P I     
Sbjct: 1   MAENDSSQEKTEEATPRRREQSREKGQVARSKELGTSAVLMAAAVGFAMT-GPSIAKALY 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  +L +  + ++ D + +  +   +    +  ++  + +  +      ++      + 
Sbjct: 60  NIMEMLFTLDRTQIFDTNALFLIWPVIGQQLAFPMLSFIAILTLMAFLGNIVLGGITFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ +  LV   K   K  +V       L+  +  +L     +
Sbjct: 120 KAFMPKTDKMNPINGFKRMFGVQALVELTKGIAKFSVVALSAYFLLSYYFNDILALSRDH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +YHA   +  + I++      + V+D+ +       +LKM+KQEIKDE K + G P
Sbjct: 180 LPGNVYHALDLLIWMFIILCSSTIIIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MM     A +I+ NP HYA+A++Y   +  AP ++AKG + +A
Sbjct: 240 EVKGKVRQMQREMAQRRMMGEVPNADVIVVNPDHYAVAVKYDAMKATAPFVLAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH I I   P LAR+++    I+  IP   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352


>gi|227112512|ref|ZP_03826168.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 383

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTEAP+ +K E A  EG  P SRE +    ++A L  L          +  
Sbjct: 1   MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWMGGEAMAGRLAR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +     + D + ++  +  L   A   +IP LL  ++  + + L+    + + 
Sbjct: 60  IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAVSALIPILLGAVLVALSAPLLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S  +L    K+ +K ++VG I T  L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTFFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + +  A         +I++ +  +   D+ W       KL+MSKQEI+DE KQ+ G+P
Sbjct: 179 PITAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQNEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY + + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351


>gi|293395574|ref|ZP_06639857.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582]
 gi|291421893|gb|EFE95139.1| flagellar biosynthetic protein FlhB [Serratia odorifera DSM 4582]
          Length = 391

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+EAP+  ++E A  EG  P SRE +    ++A L  L    S     +   L 
Sbjct: 11  EDSDLEKSEAPTPHRVEKAREEGQIPRSRELTSILMLIAGLAILWVGGSNLARQLAQMLT 70

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + +   ++  L  L   A   ++P +   ++  + + ++    + +   +
Sbjct: 71  DGL-HFDHGMVNNDRQMLHQLGMLLRQAVWALLPVMAGLVLVALTAPMLLGGILFSGKSL 129

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K   KR++   G+KRI+S   L   +K  +K +LVG +  + L  N+  ML  ++  P  
Sbjct: 130 KFDLKRLNPLSGLKRIFSSQVLAELLKGVLKALLVGWVTGLFLWHNWAAMLHLVTQQPLD 189

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L +A   V    ++++L +  +   D+ +       KLKM+KQ+I+DE K+  G+P +K
Sbjct: 190 ALANALQMVVFCGLLVVLGLVPMVAFDVFYQLWSHIKKLKMTKQDIRDEFKEQEGDPHVK 249

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   ++  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG   IA ++
Sbjct: 250 GRIRQQQQAIARRRMMSDVPKADVIVTNPTHYAVALQYNDKQMSAPRVLAKGAGEIALRI 309

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A +H IP  E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 310 RELAAQHRIPTLEAPPLARALYRHSEIGQHIPTTLYAAVAEVLAWVYQLR 359


>gi|302878260|ref|YP_003846824.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans
           ES-2]
 gi|302581049|gb|ADL55060.1| flagellar biosynthetic protein FlhB [Gallionella capsiferriformans
           ES-2]
          Length = 379

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/353 (32%), Positives = 186/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE PS ++++ A  +G    S E S FS +LA    L F  +     +  
Sbjct: 1   MAE-DSDLEKTEQPSQRRLDQAKEKGQVARSTELSTFSILLAGGATLWFMGASLNAHMVR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  L    Q  +     ++  L  LS+       P LL+ ++  +G+ LI    + + 
Sbjct: 60  LLHDALI-FNQDVVFKPELMIPRLYDLSMDMLITFAPVLLMMLITALGAPLILNGWLFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   GI RI S N+LV  +K+  K  +VG + T  +  +   ++   S +
Sbjct: 119 EALVPQFSRMNPITGIGRIISTNSLVELVKALGKATIVGGVATWVIWHHRDDVIQLASLS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +    + V    + I+  +  +  +D+ +       KL M+K+EI+ E K++ GNP
Sbjct: 179 VTTAISQTGYLVCGSFLAIVSGMLLIVAIDVPFQLWSHNKKLMMTKEEIRQESKETDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+ R   R +MM A   A +++TNPTHY++AL+Y      APV+VAKG +LIA
Sbjct: 239 EVKGRIRSMQREAARRRMMSAIPTADVVVTNPTHYSVALKYSDKGMSAPVVVAKGSHLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA E+N+PI E P LAR+L K   I  AIP   Y AVA+++  +Y  K
Sbjct: 299 HRIREIAQENNVPILEAPPLARALHKHTEIGDAIPEALYTAVAEVLAYVYQLK 351


>gi|78485088|ref|YP_391013.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena
           XCL-2]
 gi|78363374|gb|ABB41339.1| flagellar biosynthetic protein FlhB [Thiomicrospira crunogena
           XCL-2]
          Length = 381

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    K+E PS KK+ +A  +G  P S+E +     L   ++L FF +  +     
Sbjct: 1   MAENEDGTEKSEEPSEKKLREAREKGQVPRSKELTTLLMTLGAAVFLYFFGAQMMQDF-E 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +   S  +    D      L+  L + +  +++P LLL ++  + S ++      + 
Sbjct: 60  TLFIKGLSFDRSHAYDFQMATNLVLGLVVHSIYMMVPFLLLMVLIAVVSPMLLGGWNFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIK+++S+N L+   K+F K  LV  +    L  +Y  ++      
Sbjct: 120 QALAPKISKLNPVSGIKKMFSMNALMELFKAFAKFTLVSVVAGFFLWYSYEEIISIGIEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L HA   + +  I + L +  +  +D+ +  HQ  ++LKM+KQE+K+E KQ  G+P
Sbjct: 180 PKQALAHAGQLIVEAFIFVSLSLILIAAIDVPFQIHQHVTQLKMTKQEVKEEHKQQEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM+    A ++ITNPTH+A+AL+Y   E   P+++A G + +A
Sbjct: 240 EVKGRIRQLQREMSQKRMMQKVPEADVVITNPTHFAVALKYAPDEMAEPMVLALGSDFMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A EHNIP+ E P LAR+L+    ++  IP   ++AVA ++  +Y  +
Sbjct: 300 AQIRTLAKEHNIPLIEAPPLARALYYNAEVDRPIPYELFRAVAAILAYVYQLR 352


>gi|227328329|ref|ZP_03832353.1| flagellar biosynthesis protein FlhB [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 383

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 188/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTEAP+ +K E A  EG  P SRE +    ++A L  L          +  
Sbjct: 1   MAE-DSDLEKTEAPTPQKEEKAREEGQIPRSRELTSVLMMVAGLAILWMGGDAMAGRLAR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +     + D + ++  +  L   A+  +IP +L  ++  + + L+    + + 
Sbjct: 60  IVSQSL-NFDYATIGDDTQMLRHVGSLLRQAASALIPIMLGAVLVALSAPLLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S  +L    K+ +K ++VG I T+ L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGIISTLFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + +  A         +I++ +  +   D+ W       KL+MSKQEI+DE KQS G+P
Sbjct: 179 PIAAMGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMSKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY + + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAIAQRRMMADVPKADVIVTNPTHYAVALRYDEKKMNAPRVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRVPILEAPPLARALFRHSEVGQHIPAALYAAVAEVLAWVYQLK 351


>gi|220934507|ref|YP_002513406.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995817|gb|ACL72419.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. HL-EbGR7]
          Length = 384

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 177/354 (50%), Gaps = 2/354 (0%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E +D+   K+E P+ K++ +A  +G    SRE +    +LA    +L      +  + 
Sbjct: 1   MAENDDSSQEKSEQPTPKRLREAREKGQVARSRELNTTLVLLAGAGAMLVLGGGMLSRIQ 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             +        +  + D S +  +L      +  +++P   + ++  +   +       +
Sbjct: 61  EMVRGSFV-LEREAIFDASTMQAMLILRISESLLMLLPLFGILLVAAVAGPIAMGGGGFS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P + +++   G+KRI+S   L+ F K+  K  L+  I    L     ++L     
Sbjct: 120 GKAMAPKWNKLNPIAGLKRIFSWQGLMEFGKTLAKFALITAIAGSLLWGLSDSLLGLGYQ 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +    L  A + V    +++   +  + ++D+ +       +L+M+KQ++KDE K++ G 
Sbjct: 180 SLEQGLGRAAWIVGWTFLLLAASLILVALVDVPFQLWNHQKQLRMTKQQVKDEYKETEGK 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K+R +       R +MM A  +A +++TNPTHYA+ALRY Q  + AP +VAKG +L+
Sbjct: 240 PEVKSRIRQTQMEIARRRMMAAVPKADVVVTNPTHYAVALRYDQNGSGAPKVVAKGADLV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R+ A E  +P+F  P LAR++F    ++  IP   Y AVAQ++  +Y  K
Sbjct: 300 AAEIRERAREAGVPLFPAPPLARAIFYSTRLDQEIPAGLYVAVAQVLAYVYQLK 353


>gi|294140216|ref|YP_003556194.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12]
 gi|293326685|dbj|BAJ01416.1| flagellar biosynthetic protein FlhB [Shewanella violacea DSS12]
          Length = 377

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 171/353 (48%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + +++E A  +G    S+E    + +++  +           S+ +
Sbjct: 1   MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGTSAVLVSAAVGFAMVGPSIAGSLVT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  +  + ++ D + +V + + +    +  +   +LL  +      ++      + 
Sbjct: 61  IMTTLF-TMDREQVFDTNQMVLIWSMIGRELAFPMASLMLLIALVAFIGNIVLGGITFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ +  LV   K   K ++V       L+  +  +L     +
Sbjct: 120 KAFMPKTDKMNPMAGFKRMFGVQALVELTKGIAKFLVVALSAYFLLSFFFDEILALSRDH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +YHA   +  + I++      + V+D+ +       +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNVYHALDLLVWMFILLCSSTILIVVIDVPFQVWNHNKQLKMTKQEVKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MM     A +I+ NP HYA+A++Y   ++ AP ++AKG + +A
Sbjct: 240 EVKGKIRQMQREIAQKRMMSEVPNADVIVVNPEHYAVAVKYDAMKSTAPYVLAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH I I   P LAR+++    I+  IP   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352


>gi|170725986|ref|YP_001760012.1| flagellar biosynthesis protein FlhB [Shewanella woodyi ATCC 51908]
 gi|169811333|gb|ACA85917.1| flagellar biosynthetic protein FlhB [Shewanella woodyi ATCC 51908]
          Length = 377

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 170/353 (48%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + ++ E A  +G    S+E    + +LA  +  +    PGI    +
Sbjct: 1   MAENDSSQEKTEEATPRRREQAREKGQVARSKELGTSAVLLASAVGFV-MAGPGIAKALA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +  + ++ D + +  +   + L  +  ++  +    +      ++      ++
Sbjct: 60  SIMTNLFTIDRAQVFDTNEMFLIWKFIGLELAFPILSLIAFLAVVSFIGNIVLGGITFSV 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S  +G KR++ +  LV   K   K  +V       L+  +  +L     +
Sbjct: 120 KAFMPKPDKMSPVKGFKRMFGVQALVELTKGIAKFSVVALAAYFLLSFYFDDILALSREH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +YH+   +  + I++      + V+D+ +       +LKM+KQEIKDE K + G P
Sbjct: 180 LPGNVYHSLDLLAWMFILLCSSTLLIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MM     A +I+ NP HYA+A++Y   ++ AP ++AKG + +A
Sbjct: 240 EVKGKVRQMQREMAQRRMMSEVPNADVIVVNPEHYAVAVKYDVMKSTAPYVLAKGVDDVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH I I   P LAR+++    I   IP   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREHEIAIVSAPPLARAIYHTTKIEQEIPEGLFTAVAQVLAYVFQLR 352


>gi|269103165|ref|ZP_06155862.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163063|gb|EEZ41559.1| flagellar biosynthesis protein FlhB [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 376

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D    +TE  + ++ + A  +G  P SRE +  + ++A  + L++F      ++ +
Sbjct: 1   MADSDD-QERTEDATPRRRQQAQEKGQVPRSRELASVAVLIAGAVGLMWFGGSLGQALAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S T+ ++ D+  +  +++ +    +  +   L+   +              + 
Sbjct: 60  VMSRLF-SLTREEVFDLGAMSTVISEVIWGIAAPLTLVLVFLFVAAFIGAAGLGGVRFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ + + V  +KS +K+ LV  +    + ++          +
Sbjct: 119 EAAMPKLSKMNPLSGFKRMFGMQSWVELIKSILKVGLVSGVAYYLMYDSLDDFFQLAQES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +YHA  T+   +++I   +  +  +D+ +  +Q+  +LKM+KQEIKDE K++ G P
Sbjct: 179 YPNNIYHALSTLLHFILLISCSLLVVVAIDVPFQIYQFNQQLKMTKQEIKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP HY++ALRY    + APV++AKG +  A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIITNPEHYSVALRYDPKLDSAPVVIAKGVDHTA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNI I   P LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 299 FKIREIAKEHNIDIVPVPPLARAIYHTTELEQQIPDGLFIAVAQVLAYVFQLK 351


>gi|114562373|ref|YP_749886.1| flagellar biosynthesis protein FlhB [Shewanella frigidimarina NCIMB
           400]
 gi|114333666|gb|ABI71048.1| flagellar biosynthetic protein FlhB [Shewanella frigidimarina NCIMB
           400]
          Length = 377

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 172/353 (48%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D+   +TE P+SK++E +  +G    S+E    + +LA  +           S+ +
Sbjct: 1   MAESDSGQERTEDPTSKRLEQSREKGQVARSKELGTAAVLLAASVGFSMTGPAIAKSLYN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +  S  + ++ D + +  +   +    +  +I  + L         ++      ++
Sbjct: 61  IMKQIF-SMERDQIFDTNSMFRVWGVVGSELAGPLISFIALLAFVSFLGNIVLGGMSFSV 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++    LV   K   K  +V       L   ++ +L   S +
Sbjct: 120 KAFMPKGSKLNPMNGFKRMFGTQALVELTKGIAKFSVVALSAYFLLKFYFYDILTLSSDH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +YHA   +  + I++   +  + ++D+ +       +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNVYHALDLLIWMFILLCSSMLLIVIIDVPFQIWNHKKQLKMTKQEVKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + +   + +MM     A +I+ NP HYA+A++Y  + + AP L+AKG + +A
Sbjct: 240 EVKGRIRQMQQEMAQRRMMTEVPNADVIVVNPEHYAVAVKYDVSRSSAPFLIAKGVDDVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA EHN+ I   P LAR+++    ++  +P   + AVAQ++  ++  +
Sbjct: 300 FRIREIAREHNVAIVSAPPLARAIYHTTKVDQQVPEGLFTAVAQVLAYVFQLR 352


>gi|283785619|ref|YP_003365484.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168]
 gi|282949073|emb|CBG88678.1| flagellar biosynthesis protein FlhB [Citrobacter rodentium ICC168]
          Length = 382

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 186/353 (52%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE +  D+KTEAP+  ++E A  EG  P SRE +    +L  +  +          +++
Sbjct: 1   MSEEN--DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWIGGESLARRLSA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D S I+  +  L   A   ++P +   ++  + S ++    + + 
Sbjct: 59  MLSAGLR-FDHSMVNDPSLILGQIILLIKEAMIALLPLITGVVLVALISPVLLGGLIFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S  +    +K+ +K  LVG +  + L   +  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQSGAELLKAVLKSTLVGGVTALYLWHKWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + +  A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGDALDLVGLCALLVVLGVIPMVGFDVIFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM     A +I+TNPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARQRMMSDVPNADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+ IP  E P LAR+L++   I   IP   Y AVA+++  +   K
Sbjct: 298 LRIREIGAENKIPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVLQLK 350


>gi|222084854|ref|YP_002543383.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
 gi|221722302|gb|ACM25458.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
          Length = 358

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/352 (45%), Positives = 238/352 (67%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  D+KTE P+ KK+ D + +GN P SREA++F+S+LA +IY+ FF    +  +  
Sbjct: 1   MADED-KDSKTEKPTEKKLRDTMEKGNVPHSREATIFASMLATVIYVTFFLPERMGRMGE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q KLE     + L T +      LV+P ++LF +FGIGS + Q +P   L
Sbjct: 60  VLRDLFEKPDQWKLETGPDALSLFTRIGWEVGNLVLPAIVLFFIFGIGSSMFQNLPTPVL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R+S   G  RI+S + LV F KS  KI++V  I+   L   +F  +D ++++
Sbjct: 120 DRIQPKFSRISPVSGWNRIFSTSGLVEFGKSLAKIVVVSIIMFFVLRGQFFHAIDSLASD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       V+++L+++LL  A + + D+ WS H W+ +LKM+KQEIKDE KQS G+P
Sbjct: 180 PQTIFVRLSTIVQRILMIVLLATAVVGIADVLWSRHHWFDQLKMTKQEIKDEFKQSQGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+RQ+S+AR R R +M++   RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 240 IVKSRQRSVARDRARRRMIKQVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA  + IP+FE+P LARS+F QV ++S IP VFYKAVA+LI++IY +
Sbjct: 300 LKIREIAEANGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRIYAQ 351


>gi|157961202|ref|YP_001501236.1| flagellar biosynthesis protein FlhB [Shewanella pealeana ATCC
           700345]
 gi|157846202|gb|ABV86701.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
           700345]
          Length = 377

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  +S+K++ A ++G    S++    + ++A  + LL    P I     
Sbjct: 1   MAENDSSQEKTEEATSRKLQQAKDKGQVARSKDLGTSAVLIAASVGLLMT-GPNIAQAMF 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++   + + ++ ++ D + ++ +   +    +  ++  ++   +      +       ++
Sbjct: 60  NIMNKMYTLSRDEIFDTNQMMNVWGVVGSELAFPLLGFIVFLALIAFAGNIALGGISFSV 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           +   P   ++S   G KR++ +  +V   K   K  +V     + L+     +L     +
Sbjct: 120 SAFMPKASKMSPVAGFKRMFGVQAVVELAKGIAKFSVVAITAYLLLSIYLNDILLLSQEH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +YHA   +  + I++      + ++D+ +       +LKM+KQEIKDE K + G P
Sbjct: 180 LPGNIYHALDLIVWIFILLCASTLLIVMIDVPFQIWNHAKQLKMTKQEIKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A +I+ NP HYA+A++Y    + AP +VAKG + +A
Sbjct: 240 EVKGRIRQLQREMAQRRMMGEVPNADVIVVNPEHYAVAVKYDAGRSTAPFVVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH++ I   P LAR+++    I+  IP   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352


>gi|33601532|ref|NP_889092.1| flagellar biosynthesis protein FlhB [Bordetella bronchiseptica
           RB50]
 gi|33575968|emb|CAE33047.1| flagellar biosynthetic protein FlhB [Bordetella bronchiseptica
           RB50]
          Length = 384

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   K+EA S +++E A  EG    SRE   F  + A +  +    S     +T 
Sbjct: 1   MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +   +D   +V    H +  A   V+P   +  +  + S ++    V + 
Sbjct: 60  VLRRGLGFEPRVA-QDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P+F ++SL  GIKR++S   +V  +K+  K  LVG +    +   +  ML  +   
Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   V     +I+  +  + +LD+ W       KL+M+K++++ E K+S G+P
Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTHYA+AL+Y   E  AP +VAKG  LIA
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGEAGAPRVVAKGTGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++  +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351


>gi|78064847|ref|YP_367616.1| flagellar biosynthesis protein FlhB [Burkholderia sp. 383]
 gi|77965592|gb|ABB06972.1| Flagellar biosynthetic protein FlhB [Burkholderia sp. 383]
          Length = 398

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  +KTEA + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGGHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  +    D + ++      SL     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAF-TFDRATAFDTNRMLSAAGSASLEGFAALLPILALTGVAALLAPMALGGWLISS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGVALPDALHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|308048765|ref|YP_003912331.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
 gi|307630955|gb|ADN75257.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
          Length = 389

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   +TE  + ++ E A  +G  P S+E    + ++A    +L        ++ +
Sbjct: 1   MAENDSSQERTEEATPRRREQAREKGQVPRSKELGTAAVLVAAAAGMLMMGGQIGEAMLT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                    T+ ++ D+  I  L + +       V+  +L+  + G    +       + 
Sbjct: 61  VAKSQFE-LTRAEVFDLGEISELFSRILSELMVPVLGFVLVLFIAGFLGNIGLGGMSFSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S   G KR++ +  LV  +KS  K  ++  +    L+ N+  +L   S N
Sbjct: 120 QAAAPKASKMSPLAGFKRMFGLQALVELVKSIAKFAVIALVAWALLSVNFDQILQLSSGN 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   +  A   + K+ +++   +  + ++D  +       +LKM+KQE+KDE KQ+ G P
Sbjct: 180 PEGAVRDALALLLKLFVLLCSSLLIIVIIDAPYQLWNHNKQLKMTKQEVKDEYKQTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MM    +A +++ NPTHY++ALRY ++ N+AP++VAKG + IA
Sbjct: 240 EVKGKIRQLQREMAQRRMMAEVPKADVVVVNPTHYSVALRYDKSINNAPLVVAKGTDEIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH +P+   P+LAR+++    ++S IP   + AVAQ++  +Y  K
Sbjct: 300 LKIREIAREHEVPVVSSPALARAVYYSTKLDSPIPEGLFTAVAQILAYVYQLK 352


>gi|332284010|ref|YP_004415921.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7]
 gi|330427963|gb|AEC19297.1| flagellar biosynthesis protein FlhB [Pusillimonas sp. T7-7]
          Length = 386

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  S +++E A  EG    SRE + F  + A +  L    +     +T 
Sbjct: 1   MAE-DSDLEKTEPASPRRLEKAREEGQVARSRELNTFLLLAAGVATLWLSGAGLYEGLTD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +    D   +V L    +L A   ++P   + +   I + +     +L+ 
Sbjct: 60  ILRAGLWFDLRVGR-DTDVMVALAATSALEAILTLLPLFGVLVAVAILASVALGGFLLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F+R++  +G+ R++S   LV  +K+  K  ++G +  + ++     M+  + A 
Sbjct: 119 KALEPKFERLNPLKGMGRMFSAQTLVELIKTLAKASVIGIVAVMVMSHYLDQMISLMHAT 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      V     +I+  +  + ++D  W  +  Y K++MS++++K E K+S G+P
Sbjct: 179 VSEALTRGIGLVALCCALIVGGLILIVLIDAPWQIYSHYKKMRMSREDVKQEHKESDGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +I+TNPTHYA+AL Y   +  AP +VAKG  L+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPNADVIVTNPTHYAVALSYKDGQAGAPRVVAKGSGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH +P+   P LAR+L   V +   IP   Y AVA+++  ++  +
Sbjct: 299 ARIREVAQEHKVPMLSAPPLARALHHHVELGKEIPGDLYAAVAEVLAWVFQLR 351


>gi|317048539|ref|YP_004116187.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b]
 gi|316950156|gb|ADU69631.1| flagellar biosynthetic protein FlhB [Pantoea sp. At-9b]
          Length = 384

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++  + ++KTE+P++ ++E A  +G  P SRE +    +L+ ++ L +     I    +
Sbjct: 1   MADESSDEDKTESPTAHRLEKARQDGQIPRSRELTSLLMMLSGIMIL-WLGGTSIARRLA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +           + D   IV  ++ L   A   V+P +   ++  I + ++    V++ 
Sbjct: 60  SMVATGFRFDHGMVTDDKVIVAHISSLIGQAVLAVLPLMAGLVLVAIAAPMLLGGIVISG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +++   G+KR+ S       +K+ +K +LVG +    +  ++  ML  IS +
Sbjct: 120 KSLSPDFTKLNPLSGLKRMVSGQTWAELLKAILKAVLVGLVAGWYIWSHWPEMLRLISES 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L H    +    ++++L +  +   D+ W  + ++ KL+MS+Q+I+DE KQ  G+P
Sbjct: 180 PMNALEHGMDMIAICCVLVMLGLIPMVGFDVFWQLYSYFKKLRMSRQDIRDEFKQQEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y   +  AP ++AKG   +A
Sbjct: 240 HVKGRIRQAMRAAARRRMMADVPKADVIVTNPTHYSVALQYNDKKMSAPKVIAKGAGEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++  EH +PI E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 300 LKIRELGKEHRVPILEAPPLARALYRHTEIGQFIPGALYAAVAEVLAWVWQLR 352


>gi|127512310|ref|YP_001093507.1| flagellar biosynthesis protein FlhB [Shewanella loihica PV-4]
 gi|126637605|gb|ABO23248.1| flagellar biosynthetic protein FlhB [Shewanella loihica PV-4]
          Length = 377

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ND    KTE  + ++ E A  +G    S+E    + +++  +           S+ S
Sbjct: 1   MADNDTSQEKTEEATPRRREQAREKGQVARSKELGTSAVLMSAAVGFAVIGPSLGQSLMS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  + +++++ D + +  +   +    +  +   +L          ++      + 
Sbjct: 61  VMTKLF-TMSRQEIYDTNSLFNIWMMVFKELAIPMASFVLFLAFIAFLGNVVLGGITFSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ +  LV   K   K  +V  +  + L+  +  +L     +
Sbjct: 120 KAFMPKGNKMNPISGFKRMFGVQALVELTKGIAKFSVVALMAYLLLSYYFNDILTLSQGH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +Y+A   +  + I++      + V+D+ +       +L+M+KQEIKDE K + G P
Sbjct: 180 LPGNVYNALDLLVWMFIVLCSSTVIIVVIDVPFQIWNHNKQLRMTKQEIKDEYKDTEGQP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A +I+ NP HYA+A++Y  T+  AP ++AKG + +A
Sbjct: 240 EVKGRVRQMQREMAQRRMMAEVPNADVIVVNPEHYAVAVKYDVTKAAAPYVLAKGVDDVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH++ I   P LAR+++    I+  IP   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIYHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352


>gi|325291951|ref|YP_004277815.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3]
 gi|325059804|gb|ADY63495.1| flagellar biosynthesis protein FlhB [Agrobacterium sp. H13-3]
          Length = 360

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/353 (43%), Positives = 233/353 (66%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   D+KTE P+ KK+ DA  +GN P SRE  +F+S LA   YL+FF   G   +  
Sbjct: 1   MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q  L      + LL  L  S + L++P +++F++FG+ S   Q +P   L
Sbjct: 61  TLKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P + R+S  +G  RIYS    V F KS  KI++V  I+ +SL  ++++++D + ++
Sbjct: 121 ERVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I        +K++++IL   A L  +D+ W+ H W+S+LKM+K E+K+E KQS G+P
Sbjct: 181 PQVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQ+S+AR R R +M++   RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 241 VVKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y  K
Sbjct: 301 LKIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 353


>gi|33596133|ref|NP_883776.1| flagellar biosynthesis protein FlhB [Bordetella parapertussis
           12822]
 gi|33573136|emb|CAE36781.1| flagellar biosynthetic protein FlhB [Bordetella parapertussis]
          Length = 384

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   K+EA S +++E A  EG    SRE   F  + A ++ +    S     +T 
Sbjct: 1   MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVVGVWLSGSMLYQGLTG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +   +D   +V    H +  A   V+P   +  +  + S ++    V + 
Sbjct: 60  VLRRGLGFEPRVA-QDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P+F ++SL  GIKR++S   +V  +K+  K  LVG +    +   +  ML  +   
Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   V     +I+  +  + +LD+ W       KL+M+K++++ E K+S G+P
Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTHYA+AL+Y      AP +VAKG  LIA
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++  +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351


>gi|261821144|ref|YP_003259250.1| flagellar biosynthesis protein FlhB [Pectobacterium wasabiae
           WPP163]
 gi|261605157|gb|ACX87643.1| flagellar biosynthetic protein FlhB [Pectobacterium wasabiae
           WPP163]
          Length = 383

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTEAP+ +K E A  EG  P SRE +    ++A L  L          +  
Sbjct: 1   MAE-DSDLEKTEAPTPQKEEKAREEGQVPRSRELTSVLMMVAGLAILWMGGDAMAGRLAV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +     + D + ++  +  L   A+  +IP +L  ++  + + ++    + + 
Sbjct: 60  IVAQSL-NFDYATIGDDTQMLRHVGSLLHQAASALIPIMLGSVLVALSAPMLLGGILFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  FK++    G+KR++S  +L    K+ +K ++VG I T+ L  N+  +L  +S  
Sbjct: 119 KSLKVDFKKLDPISGLKRLFSAQSLAELFKAILKSVMVGVISTLFLIHNWPKILHLVSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A         +I++ +  +   D+ W       KL+M+KQEI+DE KQS G+P
Sbjct: 179 PIAALGDALELAVMCGFLIIMGLIPMVAFDVFWQVWSHIKKLRMTKQEIRDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  + +MM    +A +I+TNPTHYA+ALRY   + +AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAMAQRRMMADVPKADVIVTNPTHYAVALRYDDKKMNAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  +H +PI E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGIDHRVPILEAPPLARALFRHSEVGEHIPAALYAAVAEVLAWVYQLK 351


>gi|218699549|ref|YP_002407178.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI39]
 gi|218369535|emb|CAR17304.1| flagellar export pore protein [Escherichia coli IAI39]
          Length = 382

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMLRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|163750537|ref|ZP_02157775.1| flagellar biosynthesis protein [Shewanella benthica KT99]
 gi|161329692|gb|EDQ00681.1| flagellar biosynthesis protein [Shewanella benthica KT99]
          Length = 377

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  + +++E A  +G    S+E    + +++  + L         S+ +
Sbjct: 1   MAENDSSQEKTEEATPRRLEQAREKGQVARSKELGTSAVLVSAAVGLAMVGPSIASSLVT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L     + ++ D + +V +   ++   +  +   +L   +      ++      + 
Sbjct: 61  IMTTLFTQ-DREQIFDTNQMVLVWGMIARELAFPMASLMLFIALVAFIGNILLGGITFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P  ++++  +G+KR++ +  LV   K   K ++V +     L+  +  +L     +
Sbjct: 120 KAFMPKTEKMNPMKGLKRMFGVQALVELTKGIAKFLVVASSAYFILSFFFNEILALSRDH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +YHA   +  + I++      + V+D+ +       +LKM+KQEIKDE K + G P
Sbjct: 180 LPSNVYHALDLLVWMFILLCSSTILIVVIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MM     A +I+ NP HYA+A++Y   ++ AP ++AKG + +A
Sbjct: 240 EVKGKIRQMQREVAQRRMMAEVPSADVIVVNPEHYAVAVKYDAMKSTAPYVLAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH I I   P LAR+++    I+  IP   + A+AQ++  ++  +
Sbjct: 300 FKIREIAREHEIAIISAPPLARAIYHTTKIDQEIPEGLFTAIAQVLAYVFQLR 352


>gi|73539437|ref|YP_299804.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha JMP134]
 gi|72122774|gb|AAZ64960.1| Flagellar biosynthetic protein FlhB [Ralstonia eutropha JMP134]
          Length = 380

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ ++   KTE  S +++E A  EG    SRE + F  ++  +I L         S+ +
Sbjct: 1   MSD-ESDLEKTEPASPRRLEKAREEGQVVRSRELATFIMLMTGVIGLWTLGGTIGRSLDT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L         D S ++    ++   +    +P LLLF +  + + L+      + 
Sbjct: 60  VMRQSLR-FEPATAFDTSRMLSRFANVIWESLLAFMPLLLLFGVAAVAAPLLMGGWTFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F R+S   G+ R++S++++   +K+  K +LVG++    +       +  ++A 
Sbjct: 119 KALMPNFGRMSPMSGLGRMFSVHSVAELVKAIAKSLLVGSVGAWVVWHRLPDAIALMNAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L H    V +  + ++L +  +  +D+ W + + + KL+MSK+E+K E K+S G+P
Sbjct: 179 VQEALLHMLDMVLRCCVPVVLSLLLVAAIDVPWQFWEHFKKLRMSKEEVKQEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R+  R +MM+   +A +++TNPTH+A+ALRY +    AP ++AKG + +A
Sbjct: 239 HIKGRIRQQQRAMARRRMMQEVPKADVVVTNPTHFAVALRYEEGRMSAPRVIAKGTDEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH IP+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHRIPLMSAPPLARALHRHVDLGQEIPAGLYTAVAEVLAWVYQLK 351


>gi|167420299|ref|ZP_02312052.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166961994|gb|EDR58015.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
          Length = 390

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K+E P++ K+E A  +G  P SRE +    + A L  L          +++
Sbjct: 1   MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + +   ++  +  L       ++P     ++  +   ++    + + 
Sbjct: 60  MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+  M+  I+A 
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+DE K   G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|125973005|ref|YP_001036915.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC
           27405]
 gi|256004802|ref|ZP_05429777.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
           2360]
 gi|281417216|ref|ZP_06248236.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20]
 gi|125713230|gb|ABN51722.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum ATCC
           27405]
 gi|255991252|gb|EEU01359.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
           2360]
 gi|281408618|gb|EFB38876.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum JW20]
 gi|316940759|gb|ADU74793.1| flagellar biosynthetic protein FlhB [Clostridium thermocellum DSM
           1313]
          Length = 392

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/349 (31%), Positives = 178/349 (51%), Gaps = 1/349 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
               KTE  + +K   A  EG    SRE +    +L+  + L  F       +   L V 
Sbjct: 39  DNGEKTEKATPRKRSKAREEGQVLQSRELNSAIVLLSAFVTLRIFGQYMYEEILKCLKVA 98

Query: 66  LA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +        L  I  +  L     ++  ++  P L++ ++ GIGS   Q   +     + 
Sbjct: 99  ITVYPLNDGLFTIDGLFELYGETVITFLKIATPVLMVVLIAGIGSAYAQVGFLFTTKTLG 158

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
               R++  +G KRI+S+ +LV  +KS +KI LVG I    +      +L  +  +  S 
Sbjct: 159 IKLSRINPLKGFKRIFSLKSLVELLKSIIKIALVGYIGYGYIKGEMTNVLGMMDVDVVSS 218

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                 T+    I + +    + V D G+ + ++   L+MSKQEIK+E K+  GNP IK+
Sbjct: 219 ASFLGSTILNAAIRMCIAFVVIGVADYGYQWWEYEKSLRMSKQEIKEENKEVEGNPEIKS 278

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R +   R     +M++   +A ++ITNPTHYA+A++Y   E DAPV+VAKGQ+ +A +++
Sbjct: 279 RIRQKQRQMSMRRMLQDIPKADVVITNPTHYAVAIKYDPKEADAPVVVAKGQDYMALRIK 338

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA EH + I E   LA++L+K V I   IPP  Y+AVA+++  +Y  K
Sbjct: 339 EIAKEHKVEIVENKPLAQTLYKTVEIGGKIPPELYQAVAEVLAFVYSLK 387


>gi|15887910|ref|NP_353591.1| flagellar biosynthesis protein FlhB [Agrobacterium tumefaciens str.
           C58]
 gi|2459702|gb|AAB71778.1| FlhB [Agrobacterium tumefaciens]
 gi|15155504|gb|AAK86376.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58]
          Length = 360

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/350 (44%), Positives = 235/350 (67%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   D+KTE P+ KK+ DA  +GN P SRE  +F+S LA   YL+FF   G   +  
Sbjct: 1   MADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPEGAGRLGV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q  L      + LL  L  S + L++P +++F++FG+ S  +Q +P   L
Sbjct: 61  TLKDLFGQPEQWNLSTRPDALALLYFLGTSVAYLLMPAMIMFIVFGLASSFLQNLPSPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P + R+S  +G  RIYS    V F KS  KI++V  I+  +L  ++++++D + ++
Sbjct: 121 ERVRPQWSRISPAKGFTRIYSKQGFVEFAKSVFKIMIVSIIMFFALRGDFYSLIDLMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       V+K++++ILL  A L  +D+ W+ H W+S+LKM+K E+K+E KQS G+P
Sbjct: 181 PQVIFVRVVEIVKKMMVVILLSTALLAAVDVLWTRHHWFSQLKMTKHEVKEEYKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+RQ+SIAR R R +M+    RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA
Sbjct: 241 VVKSRQRSIARDRARRRMINNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA E+NIP+FE+P LARS+F QV ++S IPPVFYKAVA+L++++Y
Sbjct: 301 LKIRQIAEENNIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELVHRVY 350


>gi|22126401|ref|NP_669824.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10]
 gi|45441419|ref|NP_992958.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807160|ref|YP_651076.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua]
 gi|108812495|ref|YP_648262.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516]
 gi|145598622|ref|YP_001162698.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F]
 gi|149366261|ref|ZP_01888296.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125]
 gi|165925946|ref|ZP_02221778.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938738|ref|ZP_02227293.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010865|ref|ZP_02231763.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210428|ref|ZP_02236463.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401110|ref|ZP_02306613.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167425790|ref|ZP_02317543.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024657|ref|YP_001721162.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186895104|ref|YP_001872216.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928912|ref|YP_002346787.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92]
 gi|229896231|ref|ZP_04511401.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A]
 gi|229897166|ref|ZP_04512322.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897892|ref|ZP_04513043.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902876|ref|ZP_04517993.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
 gi|270486660|ref|ZP_06203734.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27]
 gi|294504041|ref|YP_003568103.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|21959388|gb|AAM86075.1|AE013854_11 flagellar biosynthesis protein [Yersinia pestis KIM 10]
 gi|45436280|gb|AAS61835.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776143|gb|ABG18662.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
 gi|108779073|gb|ABG13131.1| flagellar biosynthetic protein FlhB [Yersinia pestis Antiqua]
 gi|115347523|emb|CAL20431.1| flagellar biosynthetic protein FlhB [Yersinia pestis CO92]
 gi|145210318|gb|ABP39725.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides F]
 gi|149292674|gb|EDM42748.1| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125]
 gi|165913352|gb|EDR31974.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922150|gb|EDR39327.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990209|gb|EDR42510.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207608|gb|EDR52088.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167049499|gb|EDR60907.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055189|gb|EDR64986.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751191|gb|ACA68709.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186698130|gb|ACC88759.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680323|gb|EEO76422.1| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516]
 gi|229688933|gb|EEO80998.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693503|gb|EEO83552.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701154|gb|EEO89183.1| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A]
 gi|262361772|gb|ACY58493.1| flagellar biosynthesis protein [Yersinia pestis D106004]
 gi|262366091|gb|ACY62648.1| flagellar biosynthesis protein [Yersinia pestis D182038]
 gi|270335164|gb|EFA45941.1| flagellar biosynthetic protein FlhB [Yersinia pestis KIM D27]
 gi|294354500|gb|ADE64841.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
          Length = 386

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K+E P++ K+E A  +G  P SRE +    + A L  L          +++
Sbjct: 1   MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + +   ++  +  L       ++P     ++  +   ++    + + 
Sbjct: 60  MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+  M+  I+A 
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+DE K   G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|242238960|ref|YP_002987141.1| flagellar biosynthesis protein FlhB [Dickeya dadantii Ech703]
 gi|242131017|gb|ACS85319.1| flagellar biosynthetic protein FlhB [Dickeya dadantii Ech703]
          Length = 383

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D+   KTEAP+  + E A  EG  P SRE +    ++  L  L          +  
Sbjct: 1   MAD-DSDLEKTEAPTPHRKEKAREEGQIPRSRELTSIMMLVVGLGILWMAGDIVARRLAL 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L   T   + D   ++  +  L       ++P +L  ++  I + ++    + + 
Sbjct: 60  LLSQGLF-FTHEMISDDKQMLKHMLGLLKLGGSALVPIILGTVVVAIAAPVMLGGLIFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++ +  +++   GIKR+ S   L    K+ +K ++VG I ++ L  N+  +L  +S  
Sbjct: 119 KQMEFNLNKLNPISGIKRLVSSQMLAELFKAILKAVVVGGITSLFLWHNWQDILRLVSEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +  +          +L+ +  +   D+ W       KL+MSKQ+I+DE KQ+ G+P
Sbjct: 179 LFSAVTDSLHFAIFCGFFVLIGLIPMVGFDVFWQIWSHLKKLRMSKQDIRDEFKQNEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  + +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   IA
Sbjct: 239 HVKGRIRQLQRAMAQRRMMADVPKADVIVTNPTHYAVALQYNEQKMSAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++  EH IPI E P LAR+L+K   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LKIRELGNEHKIPILEAPPLARALYKHSEIGKNIPSTLYAAVAEVLVWVYQIK 351


>gi|114320141|ref|YP_741824.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226535|gb|ABI56334.1| flagellar biosynthetic protein FlhB [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 390

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 2/354 (0%)

Query: 1   MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E  +    KTE P+ K+++DA  +G  P SRE +    +L   + +L F       + 
Sbjct: 1   MAEESENGQEKTEQPTPKRLQDAKKKGQIPRSRELTTTLLMLFAALGMLMFGGYMGEGIV 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L        + ++ D    +  +         +V P + L M+  +   +       +
Sbjct: 61  GLLEWSF-QPGREQIFDPKEPIARVHEALGRGLLIVAPFVGLMMLVALIGPVALGGWTFS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P  ++++  +GIKRI+    L+   K   KI++VG +  +        +     A
Sbjct: 120 AQPMIPKPEKMNPVKGIKRIFGPKALIELAKGIAKILVVGAVAGVFFYLFQDELRSLALA 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              S + HA         ++   +  +  +D+ +       KL+M++QE+KDE KQ+ G 
Sbjct: 180 PLQSAMAHAIELFFIAFFVLAASLIIVVAVDVPYQLWDHQKKLRMTRQEVKDEFKQTEGK 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K + + + R   + +MME    A +++TNPTHYA+AL+Y Q    AP +VA G++ +
Sbjct: 240 PEVKGKIRQLQREAAQRRMMEKVPEADVVVTNPTHYAVALQYDQLRMRAPRVVALGKDQV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R+IA EH IP+FE P LAR+L+    I+  IP   Y AVAQ++  IY  +
Sbjct: 300 ALRIREIAGEHGIPLFEAPPLARALYHTTDIDQEIPAGLYMAVAQVLAYIYQLR 353


>gi|167623392|ref|YP_001673686.1| flagellar biosynthesis protein FlhB [Shewanella halifaxensis
           HAW-EB4]
 gi|167353414|gb|ABZ76027.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
           HAW-EB4]
          Length = 377

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE  +S+K++ A ++G    S+E    + ++A  + LL    P I     
Sbjct: 1   MAENDSSQEKTEEATSRKLQQAKDKGQVARSKELGTSAVLIAASVGLLMT-GPDIAQAMH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++   L + ++ ++ D   ++ +   +    +  ++  ++   +      +       ++
Sbjct: 60  NIMTKLFTMSRDEIFDTKQMMNVWGVIGTELALPLMGFIVFLALIAFAGNVALGGISFSV 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S   G KR++ +  LV   K   K  +V     + L+     +L     +
Sbjct: 120 KAFMPKASKMSPMAGFKRMFGVQALVELTKGIAKFSVVAITAFLLLSTYLNDILMLSQDH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +YHA   V  + I++      + V+D+ +       +LKM+KQE+KDE K + G P
Sbjct: 180 LPGNIYHALDIVVWIFILLCASTFLIVVIDVPFQIWNHAKQLKMTKQEVKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MM     A +I+ NP HYA+A++Y  T + AP +VAKG + +A
Sbjct: 240 EVKGRIRQLQHEMSQRRMMGEVPNADVIVVNPEHYAVAVKYDATRSTAPFVVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH++ I   P LAR++F    I+  IP   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREHDVAIVSAPPLARAIFHTTKIDQEIPEGLFTAVAQVLAYVFQLR 352


>gi|167470753|ref|ZP_02335457.1| flagellar biosynthesis protein FlhB [Yersinia pestis FV-1]
          Length = 386

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K+E P++ K+E A  +G  P SRE +    + A L  L          +++
Sbjct: 1   MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + +   ++  +  L       ++P     ++  +   ++    + + 
Sbjct: 60  MVAQGL-HFGHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+  M+  I+A 
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+DE K   G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|33592472|ref|NP_880116.1| flagellar biosynthesis protein FlhB [Bordetella pertussis Tohama I]
 gi|33572118|emb|CAE41658.1| flagellar biosynthetic protein FlhB [Bordetella pertussis Tohama I]
 gi|332381889|gb|AEE66736.1| flagellar biosynthesis protein FlhB [Bordetella pertussis CS]
          Length = 384

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   K+EA S +++E A  EG    SRE   F  + A +  +    S     +T 
Sbjct: 1   MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +   +D   +V    H +  A   V+P   +  +  + S ++    V + 
Sbjct: 60  VLRRGLGFEPRVA-QDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P+F ++SL  GIKR++S   +V  +K+  K  LVG +    +   +  ML  +   
Sbjct: 119 KPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   V     +I+  +  + +LD+ W       KL+M+K++++ E K+  G+P
Sbjct: 179 PSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTHYA+AL+Y      AP +VAKG  LIA
Sbjct: 239 HVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++  +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLR 351


>gi|153947600|ref|YP_001401303.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           31758]
 gi|152959095|gb|ABS46556.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP
           31758]
          Length = 386

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K+E P++ K+E A  +G  P SRE +    + A L  L          +++
Sbjct: 1   MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + +   ++  +  L       ++P     ++  +   ++    + + 
Sbjct: 60  MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+  M+  I+A 
Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    ++++L +  +   D+ +       KL+M+KQ+I+DE K   G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLLPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|315286607|gb|EFU46040.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 110-3]
          Length = 400

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++  L 
Sbjct: 20  SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 79

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + D + I+  +  L   A   ++P +   ++  I S ++    V +   +
Sbjct: 80  AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSGKSL 138

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P +
Sbjct: 139 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 198

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K
Sbjct: 199 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 258

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++
Sbjct: 259 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 318

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 319 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 368


>gi|51596001|ref|YP_070192.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           32953]
 gi|51589283|emb|CAH20904.1| flagellar biosynthetic/export protein FlhB [Yersinia
           pseudotuberculosis IP 32953]
          Length = 386

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K+E P++ K+E A  +G  P SRE +    + A L  L          +++
Sbjct: 1   MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + +   ++  +  L       ++P     ++  +   ++    + + 
Sbjct: 60  MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR+S   G+KR++S   L   +K+ +K  LVG +  + L  N+  M+  I+A 
Sbjct: 119 ESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    ++++L ++ +   D+ +       KL+M+KQ+I+DE K   G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A II+TNPTHYA+AL+Y +++  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMVDVPKADIIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|85711029|ref|ZP_01042089.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
 gi|85694942|gb|EAQ32880.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
          Length = 375

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 174/354 (49%), Gaps = 3/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    +TE P+ K+  +A  +G    S+E      +++  +   F+F   +Y+   
Sbjct: 1   MAETD--QERTEEPTEKRKREAREKGQIARSKEMGTAFVLVSAAVAF-FWFGESLYAGVR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +  +R+  D S I   L          VI       +F             + 
Sbjct: 58  GLFRDLFTLERRQAFDTSQIYKALAVGFEHIIWPVIIIFAFITLFTFLGNSWLGGINFSW 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G KR++    LV  +K   K  +V     + L+  +  +L      
Sbjct: 118 KAMAPKFSRMNPMNGFKRMFGTQALVELVKGIAKFGVVAISAFLLLSWQFDNILQISMGQ 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S++ +A   +  + ++I   +  + V+D  +   +    L+M+KQEIKDE K S G+P
Sbjct: 178 MPSMIENALDILMWMFLLICCSMFLIVVIDAPFQLWKHNKDLRMTKQEIKDEHKDSEGSP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +       +MM+   +A +++TNPTH+A+A++Y ++ N AP+L+AKG +  A
Sbjct: 238 EVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHFAVAIKYEESGNQAPILLAKGTDETA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
            K+R+IA E+++P+   P+LARS++    + + IP   + AVAQ++  +Y  K+
Sbjct: 298 AKIREIALEYDVPLVASPALARSIYHTTELETEIPRGLFVAVAQVLAYVYQLKM 351


>gi|45479286|gb|AAS66688.1| FlhB [Agrobacterium sp. H13-3]
          Length = 374

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/352 (42%), Positives = 232/352 (65%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           +++   D+KTE P+ KK+ DA  +GN P SRE  +F+S LA   YL+FF   G   +   
Sbjct: 16  ADDQDKDSKTEDPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVFFLPDGAGRLGVT 75

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L  L     Q  L      + LL  L  S + L++P +++F++FG+ S   Q +P   L 
Sbjct: 76  LKDLFGQPEQWNLSTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVLE 135

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            V+P + R+S  +G  RIYS    V F KS  KI++V  I+ +SL  ++++++D + ++P
Sbjct: 136 RVRPQWSRISPAKGFGRIYSKQGFVEFGKSLFKILIVSIIMFLSLRGDFYSLIDLMFSDP 195

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             I        +K++++IL   A L  +D+ W+ H W+S+LKM+K E+K+E KQS G+P+
Sbjct: 196 QVIFVRVVELTKKMMVVILFSTALLAAVDLLWTRHHWFSQLKMTKHEVKEEYKQSQGDPV 255

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K RQ+S+AR R R +M++   RAT++I NPTH+A+ALRY++ E DAPV+VAKGQ+LIA 
Sbjct: 256 VKARQRSVARDRARRRMIDNVPRATLVIANPTHFAVALRYVREEGDAPVVVAKGQDLIAL 315

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K+R+IA ++NIP+FE+P LARS+F QV I+S IPP FYKAVA+L++++Y  K
Sbjct: 316 KIREIAEKNNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 367


>gi|295678071|ref|YP_003606595.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002]
 gi|295437914|gb|ADG17084.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1002]
          Length = 411

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+ + ++++ A  EG    SRE S F+ +LA   Y ++  S  I     
Sbjct: 1   MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFYGVWGMSGNIGEHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++           + D + ++             ++P L +  +  + + +      L+ 
Sbjct: 59  NMVRASLMFNHASVFDTNRMLIGAGTAGREGLYALVPVLGVTGLAALLAPMALGGWQLSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R++  EG  R++SIN  +    S  K ++VG I   ++   +   L   +  
Sbjct: 119 KGLEPKFNRLNPIEGFGRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +  L ++   +     M +  +  +  LD+ +    ++ KL+M+K+E+K E ++S G+P
Sbjct: 179 LNVALANSMHLIAVCCGMTVAGMFAVAALDVPYQLWSYHKKLRMTKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIREIATENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQLR 351


>gi|83647843|ref|YP_436278.1| flagellar biosynthesis protein FlhB [Hahella chejuensis KCTC 2396]
 gi|83635886|gb|ABC31853.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis
           KCTC 2396]
          Length = 378

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END    KTE P+ +KIE A  EG  P SRE +  + +LA  + LL  F   I     
Sbjct: 1   MAENDTSQEKTEEPTPRKIEKAREEGQIPRSRELNTTAVLLAGAVGLL-VFGTTIGKALE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T+ ++ D    +  L   +L  +  ++P +L+ ++  +   +     +++ 
Sbjct: 60  GVFRASFTLTREEVFDAHQPMIHLGMAALDMAISLVPFMLVLLVASLLGPIALGGWMMSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F R++  EG+KR++S+ +L+   K   K ++VG +  I L  +   +L   S +
Sbjct: 120 KAAAPKFSRINPLEGLKRMFSLKSLMELFKGVAKTLVVGGVALIILNYSIPDLLAMGSED 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + HA   +    + +   +  + ++D+ +  +     L+M+ QEIKDE K + G P
Sbjct: 180 TMVSMAHACSLLAWSFLFLASSMILIALVDVPFQIYDNQKNLRMTMQEIKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++   +A ++ITNPTHY++AL+Y   +  AP+++AKG + +A
Sbjct: 240 EVKRRVREVQYEMSRRRMLQDVPKADVVITNPTHYSVALKYDAKKMAAPIVLAKGADHMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H I +   P L RS++    +   IP   Y AVAQ++  ++  +
Sbjct: 300 MKIREIANAHKIELVSAPPLTRSIYHHTEVGEEIPSGLYLAVAQVLAYVFQLR 352


>gi|293446267|ref|ZP_06662689.1| flagellar biosynthetic protein FlhB [Escherichia coli B088]
 gi|291323097|gb|EFE62525.1| flagellar biosynthetic protein FlhB [Escherichia coli B088]
          Length = 396

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 188/350 (53%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++  L 
Sbjct: 16  SDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLS 75

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + D + I+  +  L   A   ++P +   ++  + S ++    V +   +
Sbjct: 76  AGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSL 134

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P +
Sbjct: 135 QPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPIT 194

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K
Sbjct: 195 AMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 254

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++
Sbjct: 255 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRI 314

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 315 REIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 364


>gi|331647476|ref|ZP_08348568.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
 gi|330911689|gb|EGH40199.1| flagellar biosynthesis protein FlhB [Escherichia coli AA86]
 gi|331043200|gb|EGI15338.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
          Length = 382

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|170683078|ref|YP_001743365.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5]
 gi|170520796|gb|ACB18974.1| flagellar biosynthetic protein FlhB [Escherichia coli SMS-3-5]
          Length = 382

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|218689877|ref|YP_002398089.1| flagellar biosynthesis protein FlhB [Escherichia coli ED1a]
 gi|218427441|emb|CAR08339.2| flagellar export pore protein [Escherichia coli ED1a]
          Length = 382

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|218705380|ref|YP_002412899.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026]
 gi|293405373|ref|ZP_06649365.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412]
 gi|298381016|ref|ZP_06990615.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302]
 gi|300899130|ref|ZP_07117412.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1]
 gi|218432477|emb|CAR13370.1| flagellar export pore protein [Escherichia coli UMN026]
 gi|291427581|gb|EFF00608.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1412]
 gi|298278458|gb|EFI19972.1| flagellar biosynthetic protein flhB [Escherichia coli FVEC1302]
 gi|300357248|gb|EFJ73118.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 198-1]
          Length = 382

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|296157469|ref|ZP_06840304.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1]
 gi|295892241|gb|EFG72024.1| flagellar biosynthetic protein FlhB [Burkholderia sp. Ch1-1]
          Length = 406

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S  I     
Sbjct: 1   MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +       +   ++      S      ++P L       + + +      L+ 
Sbjct: 59  GMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMALGGWQLSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R++   G+ +++SIN  +    S VK ++VG I   ++      +L   +  
Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEILALATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351


>gi|323968302|gb|EGB63709.1| flagellar biosynthetic protein FlhB [Escherichia coli M863]
 gi|327253009|gb|EGE64663.1| flagellar biosynthetic protein FlhB [Escherichia coli STEC_7v]
          Length = 382

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|187925774|ref|YP_001897416.1| flagellar biosynthesis protein FlhB [Burkholderia phytofirmans
           PsJN]
 gi|187716968|gb|ACD18192.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
           PsJN]
          Length = 403

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S  I     
Sbjct: 1   MAE-DSDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S       +   ++      S      ++P L    +  + + +      L+ 
Sbjct: 59  GMLRAAFSFDHAGAFETRRMMIGAGVASREGLYALLPILAFTGVAALFAPMALGGWQLSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R++   G+ +++SIN  +    S  K ++VG I   ++      +L      
Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALAMQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L +    +     M +  +  +  +D+ +   Q++ KL+M+K+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAAMDVPYQLWQFHKKLRMTKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351


>gi|300904767|ref|ZP_07122595.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1]
 gi|301306905|ref|ZP_07212951.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1]
 gi|300403281|gb|EFJ86819.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 84-1]
 gi|300837880|gb|EFK65640.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 124-1]
 gi|315257287|gb|EFU37255.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 85-1]
          Length = 382

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|324007265|gb|EGB76484.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 57-2]
          Length = 382

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|26248146|ref|NP_754186.1| flagellar biosynthesis protein FlhB [Escherichia coli CFT073]
 gi|91211104|ref|YP_541090.1| flagellar biosynthesis protein FlhB [Escherichia coli UTI89]
 gi|110641997|ref|YP_669727.1| flagellar biosynthesis protein FlhB [Escherichia coli 536]
 gi|117624031|ref|YP_852944.1| flagellar biosynthesis protein FlhB [Escherichia coli APEC O1]
 gi|191172970|ref|ZP_03034504.1| flagellar biosynthetic protein FlhB [Escherichia coli F11]
 gi|218558744|ref|YP_002391657.1| flagellar biosynthesis protein FlhB [Escherichia coli S88]
 gi|227885693|ref|ZP_04003498.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972]
 gi|237705835|ref|ZP_04536316.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA]
 gi|300994042|ref|ZP_07180661.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1]
 gi|301050765|ref|ZP_07197623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1]
 gi|306814291|ref|ZP_07448457.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
 gi|26108550|gb|AAN80753.1|AE016762_6 Flagellar biosynthetic protein flhB [Escherichia coli CFT073]
 gi|91072678|gb|ABE07559.1| flagellar biosynthetic protein FlhB [Escherichia coli UTI89]
 gi|110343589|gb|ABG69826.1| flagellar biosynthetic protein FlhB [Escherichia coli 536]
 gi|115513155|gb|ABJ01230.1| flagellar biosynthesis protein B [Escherichia coli APEC O1]
 gi|190906681|gb|EDV66286.1| flagellar biosynthetic protein FlhB [Escherichia coli F11]
 gi|218365513|emb|CAR03240.1| flagellar export pore protein [Escherichia coli S88]
 gi|226900592|gb|EEH86851.1| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA]
 gi|227837266|gb|EEJ47732.1| flagellar biosynthesis protein FlhB [Escherichia coli 83972]
 gi|294491560|gb|ADE90316.1| flagellar biosynthetic protein FlhB [Escherichia coli IHE3034]
 gi|300297582|gb|EFJ53967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 185-1]
 gi|300406410|gb|EFJ89948.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 45-1]
 gi|305852450|gb|EFM52901.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
 gi|307553898|gb|ADN46673.1| flagellar biosynthetic protein FlhB [Escherichia coli ABU 83972]
 gi|307626638|gb|ADN70942.1| flagellar biosynthesis protein FlhB [Escherichia coli UM146]
 gi|315290307|gb|EFU49683.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 153-1]
 gi|323186760|gb|EFZ72080.1| flagellar biosynthetic protein FlhB [Escherichia coli RN587/1]
 gi|323952382|gb|EGB48255.1| flagellar biosynthetic protein FlhB [Escherichia coli H252]
 gi|324013524|gb|EGB82743.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 60-1]
          Length = 382

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|330445379|ref|ZP_08309031.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489570|dbj|GAA03528.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 376

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D    +TE  + +++E A  +G  P SRE +  + +++  + L+ +F  G+     
Sbjct: 1   MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLM-WFGEGLSKALG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   + S T+  + D+  +  ++    +     +   L+                  + 
Sbjct: 59  QIMTAMFSLTREDIFDLDRLFVIIFDAIVHILLPLALVLIFLFFAAFIGAAGVGGVRFSP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F +++   GIKR++ + + V  +KS +K+ LVG++    +  +           
Sbjct: 119 QAAMPKFSKMNPISGIKRMFGMQSWVELIKSILKVGLVGSVACYLIYSSLEDFFQLSIEV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +  +HA   +   +++I   +  +  +D+ +    +  +LKM+KQEIKDE K S G P
Sbjct: 179 FPANYFHALDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A ++ITNP H+++ALRY    + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A +HNI I     LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREVANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQVLAYVFQLK 351


>gi|209522058|ref|ZP_03270713.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
 gi|209497504|gb|EDZ97704.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
          Length = 411

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+   KTE+ + ++++ A  EG    SRE S F+ +LA   Y ++  S  I     
Sbjct: 1   MA-GDSDLEKTESATPRRLQKAREEGQVARSRELSTFA-LLAAGFYGVWGMSGSIGDHFQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++     +       D S ++      S      ++P L L  +  + + +     +L+ 
Sbjct: 59  NMLRASLTFNHASTFDTSRMLIGAGAASREGLYALLPILALTGLAALLAPMALGGWLLST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R++  EG+ R++SIN  +    S  K ++VG I   ++   +   L   +  
Sbjct: 119 KALEPKFSRLNPIEGLSRMFSINGPIQLGMSLAKTLVVGLIGGTAIWNRHEQFLALATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +  L ++   +     M +  +  L  LD+ +    ++ KL+M+K+E+K E ++S G+P
Sbjct: 179 LNLALANSVHLIAVCCGMTVAGMFVLAALDVPYQLWTFHKKLRMTKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HIKGKIRQQQRAIARRRMMAQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVDLNREIPGPLYGAVAEVLAWVYQLR 351


>gi|323174603|gb|EFZ60224.1| flagellar biosynthetic protein FlhB [Escherichia coli LT-68]
          Length = 382

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGVENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|191168095|ref|ZP_03029894.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A]
 gi|309796010|ref|ZP_07690423.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7]
 gi|190901893|gb|EDV61643.1| flagellar biosynthetic protein FlhB [Escherichia coli B7A]
 gi|308120460|gb|EFO57722.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 145-7]
          Length = 382

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|16129832|ref|NP_416394.1| flagellin export apparatus, substrate specificity protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89108720|ref|AP_002500.1| predicted flagellar export pore protein [Escherichia coli str. K-12
           substr. W3110]
 gi|157156351|ref|YP_001463185.1| flagellar biosynthesis protein FlhB [Escherichia coli E24377A]
 gi|170081536|ref|YP_001730856.1| flagellar export pore protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|193065459|ref|ZP_03046528.1| flagellar biosynthetic protein FlhB [Escherichia coli E22]
 gi|194429326|ref|ZP_03061852.1| flagellar biosynthetic protein FlhB [Escherichia coli B171]
 gi|209919306|ref|YP_002293390.1| flagellar biosynthesis protein FlhB [Escherichia coli SE11]
 gi|218554468|ref|YP_002387381.1| flagellar biosynthesis protein FlhB [Escherichia coli IAI1]
 gi|238901095|ref|YP_002926891.1| putative flagellar export pore protein [Escherichia coli BW2952]
 gi|256017916|ref|ZP_05431781.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
 gi|260844290|ref|YP_003222068.1| putative flagellar export pore protein FlhB [Escherichia coli
           O103:H2 str. 12009]
 gi|260855820|ref|YP_003229711.1| putative flagellar export pore protein FlhB [Escherichia coli
           O26:H11 str. 11368]
 gi|260868478|ref|YP_003234880.1| putative flagellar export pore protein FlhB [Escherichia coli
           O111:H- str. 11128]
 gi|293410191|ref|ZP_06653767.1| flagellar biosynthetic protein FlhB [Escherichia coli B354]
 gi|293415195|ref|ZP_06657838.1| flagellar biosynthetic protein FlhB [Escherichia coli B185]
 gi|300819864|ref|ZP_07100049.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1]
 gi|300924972|ref|ZP_07140897.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1]
 gi|300951503|ref|ZP_07165338.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1]
 gi|300956607|ref|ZP_07168886.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1]
 gi|301029330|ref|ZP_07192427.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1]
 gi|301327670|ref|ZP_07220877.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1]
 gi|307314208|ref|ZP_07593818.1| flagellar biosynthetic protein FlhB [Escherichia coli W]
 gi|331668576|ref|ZP_08369424.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|331673405|ref|ZP_08374173.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
 gi|331677765|ref|ZP_08378440.1| flagellar biosynthetic protein FlhB [Escherichia coli H591]
 gi|332278948|ref|ZP_08391361.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
 gi|2494574|sp|P76299|FLHB_ECOLI RecName: Full=Flagellar biosynthetic protein flhB
 gi|1736533|dbj|BAA15696.1| predicted flagellar export pore protein [Escherichia coli str. K12
           substr. W3110]
 gi|1788188|gb|AAC74950.1| flagellin export apparatus, substrate specificity protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157078381|gb|ABV18089.1| flagellar biosynthetic protein FlhB [Escherichia coli E24377A]
 gi|169889371|gb|ACB03078.1| predicted flagellar export pore protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|192926864|gb|EDV81489.1| flagellar biosynthetic protein FlhB [Escherichia coli E22]
 gi|194412633|gb|EDX28929.1| flagellar biosynthetic protein FlhB [Escherichia coli B171]
 gi|209912565|dbj|BAG77639.1| flagellar protein FlhB [Escherichia coli SE11]
 gi|218361236|emb|CAQ98820.1| flagellar export pore protein [Escherichia coli IAI1]
 gi|222033628|emb|CAP76369.1| flagellar biosynthetic protein flhB [Escherichia coli LF82]
 gi|238862415|gb|ACR64413.1| predicted flagellar export pore protein [Escherichia coli BW2952]
 gi|257754469|dbj|BAI25971.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O26:H11 str. 11368]
 gi|257759437|dbj|BAI30934.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O103:H2 str. 12009]
 gi|257764834|dbj|BAI36329.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O111:H- str. 11128]
 gi|260448997|gb|ACX39419.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1]
 gi|284921799|emb|CBG34872.1| flagellar biosynthesis protein FlhB [Escherichia coli 042]
 gi|291432843|gb|EFF05822.1| flagellar biosynthetic protein FlhB [Escherichia coli B185]
 gi|291470659|gb|EFF13143.1| flagellar biosynthetic protein FlhB [Escherichia coli B354]
 gi|299877756|gb|EFI85967.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 196-1]
 gi|300316589|gb|EFJ66373.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 175-1]
 gi|300418847|gb|EFK02158.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 182-1]
 gi|300449253|gb|EFK12873.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 116-1]
 gi|300527561|gb|EFK48623.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 107-1]
 gi|300845765|gb|EFK73525.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 78-1]
 gi|306906177|gb|EFN36695.1| flagellar biosynthetic protein FlhB [Escherichia coli W]
 gi|312946479|gb|ADR27306.1| flagellar biosynthesis protein FlhB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061186|gb|ADT75513.1| predicted flagellar export pore protein [Escherichia coli W]
 gi|315136523|dbj|BAJ43682.1| flagellar biosynthetic protein FlhB [Escherichia coli DH1]
 gi|323180678|gb|EFZ66223.1| flagellar biosynthetic protein FlhB [Escherichia coli 1180]
 gi|323186344|gb|EFZ71694.1| flagellar biosynthetic protein FlhB [Escherichia coli 1357]
 gi|323378237|gb|ADX50505.1| flagellar biosynthetic protein FlhB [Escherichia coli KO11]
 gi|323940452|gb|EGB36643.1| flagellar biosynthetic protein FlhB [Escherichia coli E482]
 gi|323948234|gb|EGB44222.1| flagellar biosynthetic protein FlhB [Escherichia coli H120]
 gi|324017961|gb|EGB87180.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 117-3]
 gi|324118940|gb|EGC12829.1| flagellar biosynthetic protein FlhB [Escherichia coli E1167]
 gi|331063770|gb|EGI35681.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|331069603|gb|EGI40990.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
 gi|331074225|gb|EGI45545.1| flagellar biosynthetic protein FlhB [Escherichia coli H591]
 gi|332101300|gb|EGJ04646.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
          Length = 382

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|303240269|ref|ZP_07326788.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus
           CD2]
 gi|302592179|gb|EFL61908.1| flagellar biosynthetic protein FlhB [Acetivibrio cellulolyticus
           CD2]
          Length = 400

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/349 (30%), Positives = 185/349 (53%), Gaps = 1/349 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK E A  EG    SRE +    +L   I +          + +   ++
Sbjct: 46  DSGDKTEKATPKKREKAREEGQVLQSREMTAAIVLLCLFITVKIAGGYMYEQIYAYFKIV 105

Query: 66  LASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            A  ++   L  +  ++ L   L L   ++V P   + ++ GI S   Q   +     + 
Sbjct: 106 FADYSKLTDLFTVEGLIKLFIDLLLRFLKIVAPVFAVALITGIVSGYAQVGFLFTTKTLA 165

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
             F R++   G KRI+S+ ++   +KS +KI+++G I    L +    +L+ ++ +  SI
Sbjct: 166 FKFSRINPLSGFKRIFSLRSVTELVKSILKIVVIGYIGYSYLADEAKNILNTMNMDVISI 225

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
             +   T   V I + + +  L VLD G+ + ++   LKMSKQEIK E K++ GNP +K 
Sbjct: 226 AAYICVTSINVAIRMCIAMLILGVLDYGYQWWEYEKSLKMSKQEIKQENKEAEGNPEVKA 285

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + +   R     +M++   +A ++ITNPTH+A+A++Y    +DAP+++AKGQ+ IA +++
Sbjct: 286 KIRQKQRQIALRRMLQDIPKADVVITNPTHFAVAIKYDPKVSDAPIVIAKGQDYIALRIK 345

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA E+ + I E   LAR+L+  V I   IPP  ++AVA+++  +Y  K
Sbjct: 346 EIAKENKVEIVENKPLARTLYASVDIGERIPPELFQAVAEVLAFVYSLK 394


>gi|331683387|ref|ZP_08383988.1| flagellar biosynthetic protein FlhB [Escherichia coli H299]
 gi|331079602|gb|EGI50799.1| flagellar biosynthetic protein FlhB [Escherichia coli H299]
          Length = 382

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLTRRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSILVGSVTGFYLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|91792697|ref|YP_562348.1| flagellar biosynthesis protein FlhB [Shewanella denitrificans
           OS217]
 gi|91714699|gb|ABE54625.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
           OS217]
          Length = 377

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 171/353 (48%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE P+ +++E A  +G    S+E    + +LA  +  +        S+  
Sbjct: 1   MAENDSSQEKTEEPTGRRLEQAREKGQIARSKELGTAAVLLASSVGFMMTGPALAKSLFR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +L +  + ++ D + +  +   +    +  ++  + +  +      ++      ++
Sbjct: 61  IMEQIL-TMERAQIFDTNSMFRVWGVIGTELAIPLLSFIGMLAVVSFLGNIVLGGINFSV 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++    LV   K   K  +V       L   +  +L   + +
Sbjct: 120 KAFMPKGSKMNPMSGFKRMFGTQALVELTKGIAKFSVVAFSAYFLLDFYFVDILQLSNDH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +  YHA   +  + I++      + ++D+ +       +LKM+KQEIKDE K + G P
Sbjct: 180 LPNNAYHALDLLVWMFILLCSSTLLIVIIDVPFQIWNHNKQLKMTKQEIKDEYKDTEGQP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+ NP HYA+A++Y  + + AP +VAKG + +A
Sbjct: 240 EVKARVRQMQREMAQKRMMAEVPKADVIVVNPEHYAVAVKYDASRSTAPFVVAKGIDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R IA EH++ I   P LAR+++    ++  +P   + AVAQ++  ++  +
Sbjct: 300 FQIRAIAREHDVAIVSAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQLR 352


>gi|15802292|ref|NP_288317.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7
           EDL933]
 gi|12515942|gb|AAG56870.1|AE005410_6 putative part of export apparatus for flagellar proteins
           [Escherichia coli O157:H7 str. EDL933]
          Length = 382

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++ V I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGXENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|315296540|gb|EFU55837.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 16-3]
          Length = 382

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|15831844|ref|NP_310617.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168747910|ref|ZP_02772932.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757917|ref|ZP_02782924.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762323|ref|ZP_02787330.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770866|ref|ZP_02795873.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776570|ref|ZP_02801577.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783183|ref|ZP_02808190.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789748|ref|ZP_02814755.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC869]
 gi|168801881|ref|ZP_02826888.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC508]
 gi|195939584|ref|ZP_03084966.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810589|ref|ZP_03252465.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816756|ref|ZP_03257876.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821749|ref|ZP_03262069.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400586|ref|YP_002270964.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328966|ref|ZP_03445047.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793504|ref|YP_003078341.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227619|ref|ZP_05941900.1| predicted flagellar export pore protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258215|ref|ZP_05950748.1| predicted flagellar export pore protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|13362058|dbj|BAB36013.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768084|gb|EDU31928.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017418|gb|EDU55540.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999430|gb|EDU68416.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355171|gb|EDU73590.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360277|gb|EDU78696.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367382|gb|EDU85798.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370698|gb|EDU89114.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC869]
 gi|189376036|gb|EDU94452.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC508]
 gi|208725105|gb|EDZ74812.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731099|gb|EDZ79788.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741872|gb|EDZ89554.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161986|gb|ACI39419.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209767300|gb|ACI81962.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|209767302|gb|ACI81963.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|209767306|gb|ACI81965.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|217318313|gb|EEC26740.1| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592904|gb|ACT72265.1| predicted flagellar export pore protein [Escherichia coli O157:H7
           str. TW14359]
 gi|320188579|gb|EFW63241.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           EC1212]
 gi|326342258|gb|EGD66039.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           1044]
 gi|326343808|gb|EGD67570.1| Flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           1125]
          Length = 382

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++ V I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|89075526|ref|ZP_01161937.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
 gi|89048798|gb|EAR54369.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
          Length = 376

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D    +TE  + +++E A  +G  P SRE +  + +++  + L+ +F  G+    S
Sbjct: 1   MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLM-WFGEGLSKALS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + + + S T+  + D+  +  ++    +     +   L+   +              + 
Sbjct: 59  HIMMAMFSLTRDDIFDLDRLFVIILDAIVYILAPLFLVLIFLFVAAFIGAAGVGGVRFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LVG+I    +  N        +  
Sbjct: 119 QAAMPKLSKINPLSGIKRMFGLQSWVELIKSILKVGLVGSIACYLIFSNLEDFFQLSNEV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +  +HA   +   +++I   +  +  +D+ +    +  +LKM+KQEIKDE K S G P
Sbjct: 179 FPANYFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A ++ITNP H+++ALRY    + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA +H+I I     LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIANKHDIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351


>gi|90579940|ref|ZP_01235748.1| flagellar biosynthesis protein [Vibrio angustum S14]
 gi|90438825|gb|EAS64008.1| flagellar biosynthesis protein [Vibrio angustum S14]
          Length = 376

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D    +TE  + +++E A  +G  P SRE +  + +++  + L+ +F  G+    S
Sbjct: 1   MSDSD-GQERTEDATPRRLEQAREKGQVPRSRELASVAVLVSGAVGLM-WFGEGLSKALS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   + S T+  + D+  +  ++    +     +   L+   +              + 
Sbjct: 59  HIMTAMFSLTRDDIFDLDRLFVIILDAIVYVLAPLFLVLIFLFVAAFIGAAGVGGVRFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LVG+I    +  +        +  
Sbjct: 119 QAAMPKLSKMNPLSGIKRMFGMQSWVELIKSILKVGLVGSIACYLIFSSLEDFFQLSNEV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +  +HA   +   +++I   +  +  +D+ +    +  +LKM+KQEIKDE K S G P
Sbjct: 179 FPANYFHAIDILLNFVLLICCSLLIVVAIDVPFQIWNFNQQLKMTKQEIKDEYKDSEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A ++ITNP H+++ALRY    + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVVITNPEHFSVALRYDPKLDSAPVVIAKGGDHLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA +HNI I     LAR+++    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIANKHNIDIVPAAPLARAIYYTTELEQQIPDGLFVAVAQILAYVFQLK 351


>gi|331653290|ref|ZP_08354295.1| flagellar biosynthetic protein FlhB [Escherichia coli M718]
 gi|331049388|gb|EGI21460.1| flagellar biosynthetic protein FlhB [Escherichia coli M718]
          Length = 382

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 191/353 (54%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S+      +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSVQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGSENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|301018276|ref|ZP_07182787.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1]
 gi|331663378|ref|ZP_08364288.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143]
 gi|300399746|gb|EFJ83284.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 69-1]
 gi|331059177|gb|EGI31154.1| flagellar biosynthetic protein FlhB [Escherichia coli TA143]
          Length = 382

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    ++  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILVVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|94312630|ref|YP_585839.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans
           CH34]
 gi|93356482|gb|ABF10570.1| flagellar biosynthetic protein FlhB [Cupriavidus metallidurans
           CH34]
          Length = 380

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  +++++E A  EG    SRE   F+ ++  +I L          + +
Sbjct: 1   MSE-ESDLEKTEPATARRLEKAREEGQVVRSRELGTFAMLMTGVIGLWATGGVLGRKLDA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +H  LA        D + ++     +   A    +P LL+F +  + + L     + + 
Sbjct: 60  VMHAGLA-FEPATAFDTNRMLSQFAAIVWDALLAFLPLLLMFGVAALVTPLALGGWMFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F R+S   G+ R++S ++LV   K+  K +LVG +    +       +  + A 
Sbjct: 119 KSFSPDFSRMSPISGLGRLFSAHSLVELAKAIAKSLLVGGVGAWMIWRKLPEAIALMDAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L H    V  V  ++   +  +  LD+ W  + ++ KL+M+K+EIK E+K++ G+P
Sbjct: 179 IQEALLHMMELVLYVSGVVAGSLILVAALDVPWQLYTFHKKLRMTKEEIKQEMKETDGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R+  R +MM    +A +++TNPTHYA+ALRY +    AP +VAKG + +A
Sbjct: 239 HIKARIRQQQRAIARRRMMAEVPKADVVVTNPTHYAVALRYEEGRMGAPRVVAKGADEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH +P+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHRVPMLSAPPLARALHRHVELGHEIPAGLYTAVAEVLAWVYQLK 351


>gi|320198575|gb|EFW73175.1| Flagellar biosynthesis protein FlhB [Escherichia coli EC4100B]
          Length = 382

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGLR-FDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|281178949|dbj|BAI55279.1| flagellar protein FlhB [Escherichia coli SE15]
          Length = 382

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR +S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRTFSAQTGAELLKAILKTILVGSVTGFFLWYHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|320194407|gb|EFW69038.1| Flagellar biosynthesis protein FlhB [Escherichia coli WV_060327]
          Length = 382

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARPLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|291278828|ref|YP_003495663.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans
           SSM1]
 gi|290753530|dbj|BAI79907.1| flagellar biosynthetic protein FlhB [Deferribacter desulfuricans
           SSM1]
          Length = 359

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 195/353 (55%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M E +    +TE  + ++ + A  EGN P SRE S     L  +I+L F+    I + + 
Sbjct: 1   MPEKNDA-ERTEEATPRRRQKAREEGNVPKSRELSTAIIFLISVIFLYFYTPILIDNFSK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L+          S  V L   +     +++ P   L ++ G+   + Q   +++ 
Sbjct: 60  LISHTLSKVGYTL--SKSATVELFNFVFQFYLKVLFPLFALLVVAGLLVNVAQFGFLISP 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P + R++   G++ ++S  +LV  +KS  KI +VG +  I +      +L+   A+
Sbjct: 118 KALEPKWDRLNPINGLQNLFSKRSLVELIKSIFKIFVVGFVAYIIVRGKIGVILNLADAD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P S +      V ++   I L I  +++LD  +   Q+   LKM+KQE+K+E KQ  G+P
Sbjct: 178 PFSSMVFFGKLVFELCFKIGLLILLMSILDFFYQKWQYEQDLKMTKQEVKEEFKQMEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +I+ R +S+ R   R +MME   +A ++ITNPTHYA+A++Y   ++ APV+VAKGQ L+A
Sbjct: 238 LIRQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDINKDRAPVVVAKGQRLMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++IA E+ + I E+P LAR+L+ QV I   IP   YKA+A+++  +Y  K
Sbjct: 298 QKIKEIAKENGVFIHEDPPLARTLYSQVEIGDEIPENLYKAIAEILAIVYKMK 350


>gi|300917538|ref|ZP_07134195.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1]
 gi|300415243|gb|EFJ98553.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 115-1]
          Length = 382

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|215487092|ref|YP_002329523.1| flagellar biosynthesis protein FlhB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967082|ref|ZP_07781300.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75]
 gi|215265164|emb|CAS09552.1| predicted flagellar export pore protein FlhB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312288546|gb|EFR16448.1| flagellar biosynthetic protein FlhB [Escherichia coli 2362-75]
          Length = 382

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQ  G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQREGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|91785647|ref|YP_560853.1| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400]
 gi|91689601|gb|ABE32801.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
          Length = 406

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S  I     
Sbjct: 1   MAE-ESDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +       +   ++      S      ++P L       + + +      L+ 
Sbjct: 59  GMLRAAFTFDHAGAFETRRMLIGAGVASREGLYALLPILAFTGAAALFAPMALGGWQLSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R++   G+ +++SIN  +    S VK ++VG I   ++      +L   +  
Sbjct: 119 KGLEPKFDRLNPIAGLGKMFSINGPIQLGLSLVKTLVVGVIGGTAIWNRREEILALATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LQLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTNVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIREIAAENNVPLLEAPPLARALYHNVELNREIPGPLYGAVAEVLAWVYQLR 351


>gi|194434131|ref|ZP_03066400.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012]
 gi|194417675|gb|EDX33775.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 1012]
 gi|332095083|gb|EGJ00117.1| flagellar biosynthetic protein FlhB [Shigella dysenteriae 155-74]
          Length = 382

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   +   + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVPVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTVFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|91776296|ref|YP_546052.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus
           KT]
 gi|91710283|gb|ABE50211.1| flagellar biosynthetic protein FlhB [Methylobacillus flagellatus
           KT]
          Length = 381

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+   KTE P+ ++IE A  +G+ P SRE S    ++A  + L+   S    ++ S
Sbjct: 1   MA-QDSDLEKTEQPTPRRIEKAREDGDVPRSREFSTCVVLMAGGLGLMMLGSRLNQAMLS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++   L   ++    D S ++  +    L       P +LL ++  +G+ ++      + 
Sbjct: 60  NMISSLR-ISREAAFDFSLLLSKIASGVLDLLIAFAPLILLLLVVIVGAPVLVGGWNFSN 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F +++   GIK ++S N+LV  +K+ +K  LVGT+  + +  ++ T+L   +  
Sbjct: 119 KAFLPKFSKLNPLNGIKNLFSKNSLVELIKAILKAALVGTVSYMVMAHDFDTLLSLPTQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +      + K  + I+  +  + ++D+ +    + +KLKM+K+E+K E K+S GNP
Sbjct: 179 LETGIAQVDDILIKGFLFIVSALVLVALIDVPYQRWSYTNKLKMTKEEVKQEAKESDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   R +MM    +A ++ITNPTHYA+A++Y      AP ++AKG + IA
Sbjct: 239 QIKGRIRQQQREMARRRMMAEIPKADVVITNPTHYAVAIKYDDQSMAAPRVIAKGADDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHN+ I E P LAR+LF    +   IP   Y AVA+++  ++  +
Sbjct: 299 LKIREIAGEHNVAILESPKLARALFAHTELGDEIPQALYAAVAEILAYVFQLR 351


>gi|157161351|ref|YP_001458669.1| flagellar biosynthesis protein FlhB [Escherichia coli HS]
 gi|170019775|ref|YP_001724729.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739]
 gi|188494102|ref|ZP_03001372.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
 gi|193069902|ref|ZP_03050851.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019]
 gi|194439073|ref|ZP_03071156.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1]
 gi|218695446|ref|YP_002403113.1| flagellar biosynthesis protein FlhB [Escherichia coli 55989]
 gi|253773163|ref|YP_003035994.1| flagellar biosynthesis protein FlhB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161940|ref|YP_003045048.1| flagellar biosynthesis protein FlhB [Escherichia coli B str.
           REL606]
 gi|300822346|ref|ZP_07102487.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7]
 gi|300928913|ref|ZP_07144417.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1]
 gi|301645603|ref|ZP_07245532.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1]
 gi|307138545|ref|ZP_07497901.1| flagellar biosynthesis protein FlhB [Escherichia coli H736]
 gi|331642498|ref|ZP_08343633.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
 gi|157067031|gb|ABV06286.1| flagellar biosynthetic protein FlhB [Escherichia coli HS]
 gi|169754703|gb|ACA77402.1| flagellar biosynthetic protein FlhB [Escherichia coli ATCC 8739]
 gi|188489301|gb|EDU64404.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
 gi|192956802|gb|EDV87256.1| flagellar biosynthetic protein FlhB [Escherichia coli E110019]
 gi|194422032|gb|EDX38036.1| flagellar biosynthetic protein FlhB [Escherichia coli 101-1]
 gi|218352178|emb|CAU97917.1| flagellar export pore protein [Escherichia coli 55989]
 gi|242377601|emb|CAQ32357.1| flagellar biosynthesis protein FlhB, subunit of Flagellar Export
           Apparatus and Flagellum [Escherichia coli BL21(DE3)]
 gi|253324207|gb|ACT28809.1| flagellar biosynthetic protein FlhB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973841|gb|ACT39512.1| flagellar biosynthesis protein B [Escherichia coli B str. REL606]
 gi|253978035|gb|ACT43705.1| flagellar biosynthesis protein B [Escherichia coli BL21(DE3)]
 gi|300463067|gb|EFK26560.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 187-1]
 gi|300525229|gb|EFK46298.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 119-7]
 gi|301076135|gb|EFK90941.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 146-1]
 gi|315617894|gb|EFU98492.1| flagellar biosynthetic protein FlhB [Escherichia coli 3431]
 gi|323937138|gb|EGB33418.1| flagellar biosynthetic protein FlhB [Escherichia coli E1520]
 gi|323961935|gb|EGB57534.1| flagellar biosynthetic protein FlhB [Escherichia coli H489]
 gi|323972611|gb|EGB67814.1| flagellar biosynthetic protein FlhB [Escherichia coli TA007]
 gi|331039296|gb|EGI11516.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
 gi|332089613|gb|EGI94715.1| flagellar biosynthetic protein FlhB [Shigella boydii 5216-82]
 gi|332343606|gb|AEE56940.1| flagellar biosynthetic protein FlhB [Escherichia coli UMNK88]
          Length = 382

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|307731376|ref|YP_003908600.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003]
 gi|307585911|gb|ADN59309.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1003]
          Length = 401

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTE+ + +++E A  EG    SRE S F+ +LA   + ++  S  I     
Sbjct: 1   MAE-ESDLEKTESATPRRLEKAREEGQIARSRELSTFA-LLAAGFFGVWAMSGSIGQHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+     +     + +   ++      S      ++P L L     + + +      L+ 
Sbjct: 59  DMLRTAFTFDHATVFETRRMMTGAGTASREGLYALLPILALTGAAALLAPMALGGWQLST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R++   G+ +I+SIN  V  + S  K ++VG I   ++      +L   +  
Sbjct: 119 KGLEPKFDRLNPIAGLGKIFSINGPVQLVMSIAKTLVVGIIGGTAIWNRREEILALSTQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCAMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351


>gi|291283062|ref|YP_003499880.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str.
           CB9615]
 gi|209767298|gb|ACI81961.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|209767304|gb|ACI81964.1| flagellar biosynthesis protein FlhB [Escherichia coli]
 gi|290762935|gb|ADD56896.1| Flagellar biosynthetic protein FlhB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320641734|gb|EFX11122.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           G5101]
 gi|320647094|gb|EFX15927.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str.
           493-89]
 gi|320652377|gb|EFX20675.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H- str.
           H 2687]
 gi|320657978|gb|EFX25740.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658551|gb|EFX26245.1| flagellar biosynthesis protein FlhB [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668449|gb|EFX35276.1| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 382

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPHMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|309702103|emb|CBJ01418.1| flagellar biosynthesis protein FlhB [Escherichia coli ETEC H10407]
          Length = 382

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSD 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|312969924|ref|ZP_07784107.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70]
 gi|310338209|gb|EFQ03298.1| flagellar biosynthetic protein FlhB [Escherichia coli 1827-70]
          Length = 382

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|220932506|ref|YP_002509414.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168]
 gi|219993816|gb|ACL70419.1| flagellar biosynthetic protein FlhB [Halothermothrix orenii H 168]
          Length = 356

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/347 (29%), Positives = 187/347 (53%), Gaps = 1/347 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           +    KTE P+ +++  A  +G    S+E S   +++   + L F     IYS+T+ +  
Sbjct: 4   NQSGEKTEKPTPRRLRKARQQGQVAKSQELSSAFTLMGGFLVLFFIIKNIIYSLTNRMSY 63

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L+     K+ D++ +  L+      A RL+ P LL   + G+    +Q  P+   + +K
Sbjct: 64  FLSLEAYNKINDVNSLYILIDSFYFIA-RLISPVLLASAIIGLVVNFLQVGPLFVPDLIK 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  K+++   G KR++S+ ++V  +KS  KI +V  +  + L  ++ T+++         
Sbjct: 123 PDLKKINPISGFKRLFSLKSVVELIKSLFKIAIVAILAYLQLKNSWQTLINLSRQGITEA 182

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           + +    + KV I I++ +  L + D  +   ++   LKM+KQE+K+E K+  G+P IK+
Sbjct: 183 VAYLGHLIFKVAITIIICLVVLGIADYIYQKWEYIRNLKMTKQEVKEEHKEIEGDPRIKS 242

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +++   R    ++M++A   A ++ITNPTH A+AL+Y     +APV+VAKG+  IAKK++
Sbjct: 243 KRREKQREMTLNRMIKAMEEADVVITNPTHIAVALKYDINSMEAPVVVAKGEGFIAKKIK 302

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + A E  I I E   LAR+L     I   IP   Y+AVA+++  +Y 
Sbjct: 303 EKARELKIEIVENKPLARALNATTEIGEEIPVDLYQAVAEVLAFLYK 349


>gi|218778857|ref|YP_002430175.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760241|gb|ACL02707.1| Flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
           AK-01]
          Length = 358

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE P+ KK +DA  +G    SR+ S    ++A L  +  F     Y +TS
Sbjct: 1   MADSPN-EDKTEQPTPKKRDDARKKGQVAKSRDLSSVVVLMAGLGIMYMFGPYMHYHITS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +    T      +  I  L   +      ++ P L    + G  S  +Q     + 
Sbjct: 60  LMENIFT--TDVSAWGVEEINTLGREMVREFLFILAPILAGVFVVGFASAAVQVGFYFSW 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F +++   G  R++S   LV   KS  K+ +VG I  +++      ++     +
Sbjct: 118 EAAAPKFSKINPISGFGRMFSKQALVELAKSLAKLFIVGFISYLTIEAEMDNLILLGQVD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L +    + K+ I + + +  + VLD  +       +LKM+KQE+KDE KQ+ G+P
Sbjct: 178 AANTLAYVLKIILKLFIRVGIIMVFVAVLDFAFQKWHHEQQLKMTKQEVKDEYKQTDGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R + I     R +MME   +A +++TNPTH ALA++Y      AP++VAKG   IA
Sbjct: 238 MVKARIRRIQMEAARRRMMEEVPKADVVVTNPTHLALAIKYNALTMGAPLIVAKGAGPIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K++++A E+++PI E   LAR+L+K V I   +P   Y+AVA+++  +Y  K
Sbjct: 298 QKIKEVARENDVPIVENKELARALYKVVDIGDEVPVALYEAVAEVLAYVYGLK 350


>gi|256022455|ref|ZP_05436320.1| flagellar biosynthesis protein FlhB [Escherichia sp. 4_1_40B]
          Length = 382

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKCSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|120554898|ref|YP_959249.1| flagellar biosynthesis protein FlhB [Marinobacter aquaeolei VT8]
 gi|120324747|gb|ABM19062.1| flagellar biosynthetic protein FlhB [Marinobacter aquaeolei VT8]
          Length = 378

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 177/354 (50%), Gaps = 2/354 (0%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E ND    KTE P+ +++E A  EG    S+E +  + +LA    LL F +    S+ 
Sbjct: 1   MAEENDNSQEKTEEPTPRRLEKAKEEGQTARSKELATMAVLLAGAGGLLIFGTSLGASIE 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           S +        +  + D  H+   L   +  A+  + P L++ ++  I   +     + +
Sbjct: 61  SIMRDSFV-IERSAIFDTRHMSVQLILAAKEAAWALSPILVMLLIAAIAGSIGIGGLLFS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P F R+   +G+ R++S+ +L+  +K+  K+ LV  +  + L      +L     
Sbjct: 120 AKAIAPKFNRMDPIKGLGRMFSMRSLIELVKAIAKVGLVMAVAILILNLRTEDLLAIAEE 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                + H  +T+      +      +  +D+ +  +    KL+M+KQE+KDE K + G 
Sbjct: 180 PTVPAMEHVLWTLGWSFFFLSCATIAIAAIDVPFQIYDHQKKLRMTKQEVKDEYKDTEGK 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K + + + R   + +MM+   +A ++ITNPTHYA+AL+Y Q    APV+VAKG + +
Sbjct: 240 PEVKGKIRQLQREMAQRRMMQDVPKADVVITNPTHYAVALKYDQKTMGAPVVVAKGADEV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+ +IA E+ + +   P L R+++    I   IP   Y A+AQ++  ++  +
Sbjct: 300 AFKIMEIARENKVEVLRTPPLTRAVYHNTDIGEEIPDGLYMAIAQVLAYVFQLR 353


>gi|254246770|ref|ZP_04940091.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
 gi|124871546|gb|EAY63262.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
          Length = 414

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 177/350 (50%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +++  +KTEA + ++ E A  EG    SRE + F+ + A          P    + + L 
Sbjct: 18  DESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQAMLR 77

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               +  +    D   ++      SL     ++P L L  +  + + +     +++    
Sbjct: 78  GAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQKTF 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +    +
Sbjct: 137 ELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLGA 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 197 ALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 257 GRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 317 RELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366


>gi|206558545|ref|YP_002229305.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
           J2315]
 gi|198034582|emb|CAR50448.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
           J2315]
          Length = 399

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  +KTEA + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  +    D   ++      SL     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|300935856|ref|ZP_07150814.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1]
 gi|300458968|gb|EFK22461.1| flagellar biosynthetic protein FlhB [Escherichia coli MS 21-1]
          Length = 382

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DEIDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVALARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|107024383|ref|YP_622710.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia AU
           1054]
 gi|116688291|ref|YP_833914.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
           HI2424]
 gi|105894572|gb|ABF77737.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia AU
           1054]
 gi|116646380|gb|ABK07021.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
           HI2424]
          Length = 399

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  +KTEA + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  +    D   ++      SL     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGAALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|126665002|ref|ZP_01735985.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17]
 gi|126630372|gb|EBA00987.1| flagellar biosynthesis protein B [Marinobacter sp. ELB17]
          Length = 377

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 181/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D+   KTE  + +++E A  +G    S+E +  + ++A    LL F +    ++ +
Sbjct: 1   MADDDSSQEKTEEATPRRLEKAKEDGETARSKELATTAVLMAGAGGLLIFGTHLGAALEA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +  +  + D+ H+   L   + +A+  + P L++ ++  I   +     + + 
Sbjct: 61  IMRDAF-TLERSAIFDMRHMSVQLIASTKAAAWALSPILVMLLVAAIAGSIGIGGLLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++  +GI R++S  +L+   K+  K+ LV TI  + L      +L   +  
Sbjct: 120 KSIAPKLNRMNPIKGIGRMFSARSLIELFKAIAKVGLVLTIAILILQVRTVDLLSISAEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H  +T+     ++      + V+D+ +  +  + KLKM+ QE+KDE K S G P
Sbjct: 180 AVPAMEHVLWTLGWSFFLLSCATIIIAVIDVPFQIYDHHKKLKMTMQEVKDEHKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM+    A ++ITNPTHYA+AL+Y      AP++VAKG + +A
Sbjct: 240 EVKGRIRQLQREMSQRRMMQDVPTADVVITNPTHYAVALKYDPNSMAAPMVVAKGGDELA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+ +IA E+ + I   P LAR+++    I   IP   Y A+AQ++  ++  +
Sbjct: 300 FKIMEIARENKVEILRTPPLARAVYHNSDIGQEIPDGLYMAIAQVLAYVFQLR 352


>gi|308187224|ref|YP_003931355.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1]
 gi|308057734|gb|ADO09906.1| Flagellar biosynthetic protein flhB [Pantoea vagans C9-1]
          Length = 383

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 186/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+ ++KTE+P++ ++E A  EG  P SRE +    +LA ++ L    +   + + +
Sbjct: 1   MAE-DSDEDKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWMGGNMMAHRLAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + D   IV  +  L   A   ++P +   ++  I + ++    V + 
Sbjct: 60  MVATGLR-FDHGMVRDDKIIVSHIGSLITQALMALLPLMGGLVLVAIAAPMLLGGLVFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K++S   G KR+++        K  +K ILVG +    +  ++  ML  IS  
Sbjct: 119 KSIKFDLKKMSPMAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRLISEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L H    +     +++L +  +   D+ W  +  + KLKMS QEI+DE KQ  G+P
Sbjct: 179 PVTALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 299 LRIRELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 351


>gi|254785483|ref|YP_003072912.1| flagellar biosynthesis protein FlhB [Teredinibacter turnerae T7901]
 gi|237686236|gb|ACR13500.1| flagellar biosynthetic protein FlhB [Teredinibacter turnerae T7901]
          Length = 377

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  + +++E A  EG  P SRE +  + +LA  I L+  F   + +   
Sbjct: 1   MAEQDSSQEKTEEATPRRLEKAREEGQVPRSRELTTTAVLLAGTISLV-LFGGVMANAQL 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  L     +  + D   +   L      A   ++P   + ++  I   +     + + 
Sbjct: 60  EIMRLNFDLPREVIFDPELMFAQLGASFKEALLSLMPLFAVILVAAIAGPVALGGWLFSS 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+   +G+ R++S+ +L+  +KS  K+ +V  +  + L++    +L      
Sbjct: 120 KALAPKLNRMDPIKGLGRMFSMKSLIELVKSIGKVAIVVGVAFVLLSQMKTALLGLSQEG 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+        +++      +  +DI +       KLKMS+Q+I+DE+K + G P
Sbjct: 180 LEQAIIHSLTLSLWAAVLLSASTIVIAAMDIPFQIWDHSKKLKMSRQDIRDEMKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K++ + + +   +++MM A   A ++ITNPTHY++ALRY       PV+VAKG + +A
Sbjct: 240 EVKSKIRQMQQEMAQNRMMSAVPEADVVITNPTHYSIALRYDPKTMSTPVVVAKGIDFVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E+ I   + P LAR+++    +   IP   Y AVAQ++  ++  +
Sbjct: 300 MKIREIARENKIEFVQAPLLARAIYATTDLEDEIPEGLYVAVAQVLAYVFQLR 352


>gi|3169254|gb|AAC17834.1| flagellar protein FlhB [Escherichia coli]
          Length = 382

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+R R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRARARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPRLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|209547917|ref|YP_002279834.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533673|gb|ACI53608.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 359

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/350 (42%), Positives = 238/350 (68%), Gaps = 1/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  +  
Sbjct: 1   MADDD-KDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGHMAE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +     Q K+E    ++ L   L  + + L+ P  +LFM+FGI S + Q +P   L
Sbjct: 60  TLRDIFDQPDQWKIETGPDVLSLFVKLGWAIAALLAPAFILFMVFGIASSIFQNLPTPVL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +R++S+  L+ F KS  K+++VG I+   L   YF+ +D + ++
Sbjct: 120 ERIRPQASRISPVKGWERLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +IL      +RK++I++L+  A + ++D+ W+ H W+++LKM++ EIK+E KQ+ G+P
Sbjct: 180 PQTILVRISTAMRKIIIVVLIATAIVAIVDVFWTRHHWFTELKMTRHEIKEENKQAQGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA
Sbjct: 240 FVKGRQRSLMRDRARRRMISNVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV +++ IP VFYKAVA+LI+++Y
Sbjct: 300 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDTVIPSVFYKAVAELIHRVY 349


>gi|116694207|ref|YP_728418.1| flagellar biosynthesis protein FlhB [Ralstonia eutropha H16]
 gi|113528706|emb|CAJ95053.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
          Length = 380

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S +++E A  EG    SRE + F  ++A +  L         S+  
Sbjct: 1   MSE-ESDLEKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVTGLWTLGGHLGRSLNQ 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L         D S ++     +   +    +P L LF +  + + L+    V + 
Sbjct: 60  VMQGALR-FEPATAFDTSRMLSRFAMMVWDSLLAFLPLLFLFGVAALAAPLLLGGWVFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F R+S   G+ R++S ++LV  +K+  K +LVG++    L       +  ++A 
Sbjct: 119 KSFAPQFSRLSPLAGLGRMFSAHSLVELLKAVAKSLLVGSVGAWVLWRRLPEAIALMNAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L H    V    +++ L +  +  +D+ W Y +++ KL+M+K+E+K E K+S G+P
Sbjct: 179 VQEALLHMVDLVMYCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R+  R +MM    +A +++TNPTH+A+ALRY +    AP +VAKG   IA
Sbjct: 239 HIKGRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKGTGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH +P+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351


>gi|170731604|ref|YP_001763551.1| flagellar biosynthesis protein FlhB [Burkholderia cenocepacia
           MC0-3]
 gi|169814846|gb|ACA89429.1| flagellar biosynthetic protein FlhB [Burkholderia cenocepacia
           MC0-3]
          Length = 399

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  +KTEA + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  +    D   ++      SL     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAF-TFDRATAFDTHRMLSAAGSASLEGFAALLPLLALTGVAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGVALPDALHLVAVCCGTTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|300717104|ref|YP_003741907.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
 gi|299062940|emb|CAX60060.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
          Length = 381

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 191/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ + KTE+ +  +IE A  EG  P SRE +    ++A L  L    +     + +
Sbjct: 1   MA-GDSEEEKTESATPHRIEKAREEGQIPRSRELTSVLMLVAGLSILWITGATMARKIGA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D S ++ LL +L       +IP +   ++  I + ++    V++ 
Sbjct: 60  LLADGLK-FNHSVVSDTSQMLHLLGNLVQQGIFTLIPMMAGLVLVAIAAPMLLGGVVISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +GI +++S       +KS +K ILVG +  + +  ++  ML  IS +
Sbjct: 119 KAIKFDVGKMNPIKGIGKLFSGQTAAELLKSVLKAILVGCVTWLYIRHHWPDMLRLISES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P++ L ++   +    ++++  ++ + + D+ W  + ++  L+M++Q+I+DE KQ  G+P
Sbjct: 179 PYNALANSLNMIAMCSVLVVFGLSPMVMFDVFWQLYSYFKGLRMTRQDIRDEYKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDERKMSAPKVVAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IPI E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 299 LRIRELGKEHRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351


>gi|162139338|ref|YP_689375.2| flagellar biosynthesis protein FlhB [Shigella flexneri 5 str. 8401]
          Length = 397

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|24113260|ref|NP_707770.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str. 301]
 gi|30063328|ref|NP_837499.1| flagellar biosynthesis protein FlhB [Shigella flexneri 2a str.
           2457T]
 gi|24052262|gb|AAN43477.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 2a str. 301]
 gi|30041580|gb|AAP17308.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 2a str. 2457T]
 gi|281601322|gb|ADA74306.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 2002017]
 gi|313650088|gb|EFS14501.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2a str.
           2457T]
 gi|332757344|gb|EGJ87681.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2747-71]
 gi|332757435|gb|EGJ87770.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-671]
 gi|332766606|gb|EGJ96810.1| flagellar biosynthetic protein FlhB [Shigella flexneri 2930-71]
 gi|333017652|gb|EGK36964.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-304]
          Length = 397

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|241203095|ref|YP_002974191.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856985|gb|ACS54652.1| flagellar biosynthetic protein FlhB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 359

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/350 (43%), Positives = 239/350 (68%), Gaps = 1/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++ 
Sbjct: 1   MADDD-KDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPDSVGRMSE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +     Q K+E    ++ L   L  +++ LV P  +LFM+FG+ S + Q +P L L
Sbjct: 60  TLRDIFEQPDQWKIETGPDVLALFVRLGWASAALVAPAFILFMVFGVASSVFQNLPTLVL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G  R++S+  LV F KS  K+++VG I+   L   YF  +D + ++
Sbjct: 120 ERIRPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P
Sbjct: 180 PQTILVRLMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA
Sbjct: 240 FVKSRQRSLMRDRARRRMIADVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y
Sbjct: 300 LKIREIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 349


>gi|315121857|ref|YP_004062346.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495259|gb|ADR51858.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 354

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 261/352 (74%), Positives = 312/352 (88%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSEND P+NKTE+PSSKKIEDAL++GNAP+SRE  LFSS LACLIYLLFF SPGI+ +T 
Sbjct: 1   MSENDNPENKTESPSSKKIEDALSKGNAPVSREVYLFSSTLACLIYLLFFVSPGIHDLTY 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D  + LAS TQ KL+ +SH+VFLL  L  S S+L+IPGLLLFM+FG+GSYLIQRIP  NL
Sbjct: 61  DFRMFLASVTQWKLDSVSHLVFLLVTLGFSTSKLLIPGLLLFMIFGVGSYLIQRIPSFNL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N+++PS KR+SLREGIKRIYS NNLVNF KS  KI++VGT+I ISL +N+ TML+ I++N
Sbjct: 121 NNIRPSLKRISLREGIKRIYSTNNLVNFTKSSFKIVIVGTLIAISLKDNHLTMLESITSN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  IL+H FFT+RK+LI+ILLFIA LT++DIGW+Y+QWYSKLKMSKQE+KDEIKQSYGNP
Sbjct: 181 PQIILHHIFFTIRKILIIILLFIAILTIIDIGWTYYQWYSKLKMSKQEVKDEIKQSYGNP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+RQKSIARSRIRHKM+EATSRAT++ITNPTHYALALRY+ TEND P+++AKGQNLIA
Sbjct: 241 MIKSRQKSIARSRIRHKMIEATSRATLVITNPTHYALALRYVPTENDVPIMIAKGQNLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+RKIA E NIPIFE+P LARSLF+QVPINS+IPPVFYKA+AQLI+KIY K
Sbjct: 301 SKIRKIASEKNIPIFEDPLLARSLFRQVPINSSIPPVFYKAIAQLIHKIYSK 352


>gi|117923329|ref|YP_863946.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1]
 gi|117607085|gb|ABK42540.1| flagellar biosynthetic protein FlhB [Magnetococcus sp. MC-1]
          Length = 355

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 191/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  D+KTE P+SK++ D+ N+G    S+E      +LA L   L   +    ++  
Sbjct: 1   MADED-KDSKTEEPTSKRLSDSRNKGQVVSSKEVPTALLMLAALAVFLVQGNELWQALQR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +H  L+      +   + +  +   +  +    + P   LF++  I S LIQ   ++  
Sbjct: 60  KMHFFLSGQISDDI-TPTGVSLIFNEIIRAVVMDLAPFFALFLVVAIISGLIQHGWLITF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +V+  +G+KR++S+ +LV   KS VKI ++   + +++  N   +L      
Sbjct: 119 EPLMPKFSKVNPLQGLKRLFSVRSLVEAFKSIVKIFVISFAVYLAMRNNIDQILGLADTT 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                   F    ++L  + L    + VLD  +    +   L+MSKQEIKDE+KQ  G+P
Sbjct: 179 ITEFTTLMFKDSLEILWRVTLAFLLIAVLDFIYQKFDYIKGLRMSKQEIKDEMKQMEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R + I R   + +MM+   +A +IITNPTHYA AL+Y   +  AP LVAKG+ LIA
Sbjct: 239 LLKGRIRQIQRELAQSRMMQEVPKADVIITNPTHYACALQYTPGQMSAPKLVAKGKGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+NIP  E P LAR+L++ V +   IPP  +KAVA+++  ++  K
Sbjct: 299 ARIRELADENNIPRVENPPLARTLYRDVELEQFIPPELFKAVAEVLAYVFSLK 351


>gi|304396256|ref|ZP_07378138.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB]
 gi|304356625|gb|EFM20990.1| flagellar biosynthetic protein FlhB [Pantoea sp. aB]
          Length = 382

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/350 (29%), Positives = 184/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+ ++KTE+P++ ++E A  EG  P SRE +    +LA ++ L    +   + + + + 
Sbjct: 2   SDSDEDKTESPTAHRLEKAREEGQIPRSRELTSVLMLLAGIMILWMGGNMMAHRLAAMVA 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + D   IV  +  L   A   ++P +   ++  I + ++    V +   +
Sbjct: 62  TGLR-FDHGMVRDDKIIVSHIGSLITQALMALLPLMGGLVLVAIAAPMLLGGIVFSGKSI 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K   K+++   G KR+++        K  +K ILVG +    +  ++  ML  IS  P +
Sbjct: 121 KFDPKKMNPIAGFKRMFAAQAWTELFKGILKTILVGAVGWWYIWSHWPEMLRLISEAPVT 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L H    +     +++L +  +   D+ W  +  + KLKMS QEI+DE KQ  G+P +K
Sbjct: 181 ALIHGMEMIAVCCSLVMLGLIPMVGYDVFWQLYSHFKKLKMSMQEIRDEHKQQEGDPHVK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA ++
Sbjct: 241 GRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVVAKGAGEIALRI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 301 RELAAEHRIPVLEAPPLARALYRHTEIGQHIPGALYAAVAEVLAWVWQSR 350


>gi|270262410|ref|ZP_06190681.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13]
 gi|270043094|gb|EFA16187.1| flagellar biosynthetic protein FlhB [Serratia odorifera 4Rx13]
          Length = 398

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/350 (28%), Positives = 181/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+EAP++ ++E A  +G  P SRE +    ++A L  +          + + L 
Sbjct: 18  EDSDLEKSEAPTAHRVEKAREDGQIPRSRELTSVLMLVAGLSIIWVAGGGMAQQLAAMLT 77

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L +     + +   ++  L  L   A   ++P +   ++  I + ++    +L+   +
Sbjct: 78  QGL-NFDHTMVSNDKQMLRQLGMLLRQAVWALLPIMAGLVLVAITAPMLLGGLLLSGKSL 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K   KR++   G+KR++S   L   +K  +K  LVG I  + L  ++  ML  ++  P  
Sbjct: 137 KFDVKRMNPLSGLKRMFSSQVLAELLKGLLKATLVGWITGLYLWHHWAEMLHLVTQQPLD 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L +A   +    ++++L +  +   D+ +     + KLKM+KQ+I+DE K   G+P +K
Sbjct: 197 ALGNALRMIIFCGLLVVLGLTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDPHVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG   IA ++
Sbjct: 257 GRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDQKMSAPKVLAKGAGEIALRI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 317 RELGTEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLR 366


>gi|152983829|ref|YP_001349232.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PA7]
 gi|150958987|gb|ABR81012.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PA7]
          Length = 378

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  +A  +G  P SRE +  + ++A    LL + +    ++  
Sbjct: 1   MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAAAMLR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       ++  + +   ++ LL      A++ + P LL+ ++  I   +     + ++
Sbjct: 61  LMRSSFE-LSRETVLNTESMLQLLGASGYLAAQGLWPILLMLLVAAIVGPIALGGWLFSM 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   G+KR++S  +L+   K+ +K ++V  +  + L+ +   +L      
Sbjct: 120 DALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +  +D+ +       KL M+KQE++DE K S G P
Sbjct: 180 LEQAILHSAQVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLMMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K++ + + R   + +MM A   A ++ITNPTH+A+AL+Y      AP+L+AKG + +A
Sbjct: 240 EVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y  K
Sbjct: 300 LKIREVAREHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352


>gi|117617532|ref|YP_855917.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558939|gb|ABK35887.1| flagellar biosynthetic protein FlhB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 376

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 173/354 (48%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    +TE P+ K+++ A  +G    S+E    S +LA +  LL        ++  
Sbjct: 1   MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVK 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +   +  + +  D + ++ +L  L       +    +L  +      ++      + 
Sbjct: 59  VLTMGF-TLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNILMGGMNFSS 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P + ++S   GIKR++ + +LV  +KS  K++ +       L+  +  +L+     
Sbjct: 118 EAMLPKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEG 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A   +  +LI++   +  +  +D+ +       +LKM+KQE+KDE K S G P
Sbjct: 178 YPGGIIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLI 299
            +K R + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG + I
Sbjct: 238 EVKGRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEI 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+IA E+ IP+   P+L R+++    I   IP   + AVAQ++  +Y  K
Sbjct: 298 AMKIREIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 351


>gi|89094442|ref|ZP_01167382.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
 gi|89081334|gb|EAR60566.1| flagellar biosynthesis protein [Oceanospirillum sp. MED92]
          Length = 379

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+ K+I +A  +G+ P S+E +    ++A +  ++ F S    S+  
Sbjct: 1   MAE-DSGQEKTEDPTPKRIREAREKGDVPRSKELATTLVLMAAVFSVIIFSSQLAESMLG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +        ++ + D + ++      +  A   +     +  +  +   +       + 
Sbjct: 60  MMESNFV-LDRQSVFDTNKMLAHFEVSAEEAIMGLAGIFAVLALAALVGPIALGGWNFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+    GIKR++S+ +L+   K+  K  LVG    + L      +L   S  
Sbjct: 119 QSIVPKGSRIDPLAGIKRMFSLKSLIELFKAIAKFSLVGGFAILILWTIREDILALASYE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A   +  V + +   +  + V+D+ +  + +  K++M+ QE+KDE+K + G P
Sbjct: 179 ARVAIDEALDIIIWVFMALSAVLILVAVVDVPYQLYDYTQKMRMTMQEVKDELKNTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM+A   A ++ITNPTHY++AL+Y      APVL+AKG + +A
Sbjct: 239 EVKGRIRQLQREIAQRQMMQAVPEADVVITNPTHYSVALKYDGENRGAPVLLAKGADFVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+IPI   P LAR+++    I+  IP   Y AVAQ++  ++  K
Sbjct: 299 LKIREIAKEHDIPILSAPPLARAIYNSTEIDDEIPSGLYMAVAQVLAYVFQLK 351


>gi|86356301|ref|YP_468193.1| flagellar biosynthesis protein FlhB [Rhizobium etli CFN 42]
 gi|86280403|gb|ABC89466.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
           42]
          Length = 373

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/347 (43%), Positives = 235/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    ++ L   L  + + L+ P  +LFM+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDVLSLFVRLGWAIAALLAPAFILFMVFGIASSVFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  L+ F KS  K+++VG I+   L   YF+ +D + ++P +
Sbjct: 137 RPQASRISPAKGWGRLFSLPGLIEFGKSLFKVVVVGLILFFVLRSEYFSSIDAMFSDPQT 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ EIK+E KQ+ G+P +K
Sbjct: 197 ILVRISTAMRKIVIVVLIATAIVAIADVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363


>gi|190890352|ref|YP_001976894.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
 gi|190695631|gb|ACE89716.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
          Length = 373

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/347 (42%), Positives = 233/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  L+ F KS  K+++VG I+   L   YF  +D + ++P +
Sbjct: 137 RPQASRISPVKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D  W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363


>gi|152997434|ref|YP_001342269.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1]
 gi|150838358|gb|ABR72334.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MWYL1]
          Length = 378

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE+ SSKK++DA N+GN P S++ S    ++     +    +  +  +  
Sbjct: 1   MAENEDGSEKTESASSKKLQDARNKGNLPRSKDLSSALLLIVAAATIYGTGTLLVRDLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L        +  + D+S +VF L    ++    ++  + +  + GI   +       + 
Sbjct: 61  -LFDFNFLVERADVFDLSRMVFHLYESVVAMMDSMVLLMAVLAVAGIVGSIALGGLNFSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++S   G+KR++S+ +LV   KS  K+ LVG +  + +       L     +
Sbjct: 120 EPLTPKLSKMSPIAGLKRMFSVQSLVELFKSIAKVTLVGIVSVLVVNYFLPETLGLTFQS 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H    V    + + L +A +  +D+ +       KLKM+KQE+KDE KQ  G+P
Sbjct: 180 IELAIAHGIDIVIWSFVFVTLALALIAAIDVPFQVWSHKEKLKMTKQEVKDEYKQQEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ R + + R    ++MM     A +IITNPTH+++AL+Y Q    APVL+AKG + IA
Sbjct: 240 LVRGRIRQMQRQAAMNRMMSDVPSADVIITNPTHFSVALKYDQAGGAAPVLLAKGGDFIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++   ++IP+ + P+LAR+++    I   IP   +K VAQL+  +Y  +
Sbjct: 300 LKIREVGNHYDIPVIQSPALARAIYHHTEIGDEIPQGLFKVVAQLLAYVYQLR 352


>gi|209695727|ref|YP_002263657.1| flagellar biosynthesis protein FlhB [Aliivibrio salmonicida
           LFI1238]
 gi|208009680|emb|CAQ79979.1| polar flagellar assembly protein FlhB [Aliivibrio salmonicida
           LFI1238]
          Length = 376

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D    +TE  +SK+++ A ++G    S+E +  S ++   I L++F      ++ S
Sbjct: 1   MADSD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAISLMWFGDEVGKALLS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S ++ ++ D + ++ ++    ++    V+  LL+  +  +           + 
Sbjct: 60  IMSRFF-SISREEIFDTNKLLEIVGGALVALVFPVLKILLMLFVAALIGAAGLGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LVG      + ++   +       
Sbjct: 119 EAAMPKPSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGTAFYLINKSKADLFQLSLDT 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQEIKDE K++ G P
Sbjct: 179 YPSNIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A +I+TNP HY++ALRY QT++ AP++VAKG + IA
Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVIVTNPEHYSVALRYDQTKDSAPIVVAKGVDHIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNI I   P LAR+L+    +   IP   + AVAQ++  I+  K
Sbjct: 299 MKIREIAREHNIDILPAPPLARALYHSTEVEQQIPDGLFAAVAQILAYIFQMK 351


>gi|170694379|ref|ZP_02885533.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
 gi|170140802|gb|EDT08976.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
          Length = 401

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S  I     
Sbjct: 1   MAE-ESDLEKTESATPRRLQKAREEGQIARSRELSTFA-LLAAGFFGVWGMSDSIGEHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +       +   ++      S      ++P L +     + + +      L+ 
Sbjct: 59  AMLRAAFTFDHAGAFETHRMMIGAGAASREGLYALLPILAVTGAAALLAPMALGGWQLST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F+R++   G+ +I+SIN  +    S  K ++VG I   ++      +L   +  
Sbjct: 119 KGLEPKFERLNPIAGLGKIFSINGPIQLAMSLAKTLVVGIIGGTAIWNRREEILALATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351


>gi|77359754|ref|YP_339329.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874665|emb|CAI85886.1| Flagellar biosynthetic protein flhB, putative part of export
           apparatus for flagellar proteins [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 376

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE P+SKK+EDA  +G    S+E      ++   I LL +       + +
Sbjct: 1   MSE-DSGQEKTEEPTSKKVEDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +L S  + +  D + +  +   ++ +    +   +L+ ++       +      + 
Sbjct: 60  VMGRML-SLNRNETYDTTKMFAVWGEVADALMFPMAMFVLIIVLAAFIGNTMLGGFNFSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S  +G KR++     V  +KS +K  LV +     +   +  +L     +
Sbjct: 119 QAAAPKASKMSPAKGFKRMFGPQAGVELLKSLLKFGLVASFAVFLINTFFDEILHLSVES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + HA   +  + + +   +  +  +D  +  +    +LKM+ QE+KDE K S G+P
Sbjct: 179 APGNIIHALEILAWMFLGLSCTLIIIAAIDAPFQSYNHNKQLKMTLQEVKDEYKNSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP++VAKG + +A
Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVVAKGIDEMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++RKIA  + +PI E PSL R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MQIRKIAIGNEVPILESPSLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351


>gi|291613025|ref|YP_003523182.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus
           ES-1]
 gi|291583137|gb|ADE10795.1| flagellar biosynthetic protein FlhB [Sideroxydans lithotrophicus
           ES-1]
          Length = 381

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/353 (31%), Positives = 190/353 (53%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE+PS ++++ A  EG    SRE S F+ ++A    +          + S
Sbjct: 1   MAEQDSDLEKTESPSQRRLDQAREEGQVARSRELSTFAVLMAGGAGIWLMGGMLSQQLIS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L   T         +V  L  LS+S   + +P L L +     S L+    +  L
Sbjct: 61  LIREGLTLDTGLAFHS-ELLVPRLHDLSMSTLLVFLPLLGLLLAVAAFSPLLLNGWLFTL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P+F +++   GI R++S N+L+   K+  K ++VG I  + +  N   +L  +S  
Sbjct: 120 KPLQPNFGKLNPITGIGRMFSTNSLMELAKAIAKAVVVGGIGALVIWHNKNAVLLLVSEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S + H    V      ++  +  +  +D+ +   +   KLKM+K+E++ E K++ G+P
Sbjct: 180 IASAIPHLGSLVWGSFAAVMGGLLLIVAVDVPFQLWEHNKKLKMTKEEVRQESKETEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+ R   R +MM    +A +++TNPTHY++AL+Y  ++  APV+VAKG +L+A
Sbjct: 240 QVKARVRSMQREMARRRMMAEIPKADVVVTNPTHYSVALKYSDSKMRAPVVVAKGSHLMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA EHN+PI E P LAR+L K   +  AIP   Y AVA+++  +Y  +
Sbjct: 300 AKIKEIAKEHNVPILEAPPLARALHKHCELGEAIPEALYTAVAEVLAYVYQLR 352


>gi|332756021|gb|EGJ86374.1| flagellar biosynthetic protein FlhB [Shigella flexneri 4343-70]
 gi|333003254|gb|EGK22800.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-218]
          Length = 397

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 188/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQ  G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQGEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|238755333|ref|ZP_04616676.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473]
 gi|238706469|gb|EEP98843.1| Flagellar biosynthetic protein flhB [Yersinia ruckeri ATCC 29473]
 gi|253317686|gb|ACT22775.1| flagellar biosynthesis protein FlhB [Yersinia ruckeri]
          Length = 383

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P++ K+E A  +G  P SRE +    + A L  L  F       + +
Sbjct: 1   MAE-DSDLEKTEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLSILWVFGESIGRQLAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + +   ++  +  L +   + ++P  +  ++  I   ++      + 
Sbjct: 60  MIAQGL-QFNHGVIGNEKQMLRQVGMLLMQTVKALLPVFIGLVLVAISVPMLLGGIAFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              K   KR++   G+KR++S   L   +K+ +K  LVG +  + L   +  ML  I+A 
Sbjct: 119 ESFKFDLKRMNPISGLKRMFSSQVLAELLKAILKATLVGWVTGMFLWHYWPDMLRLIAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +     +++L +  +   D+ +       KL+M+KQEI+DE K   G+P
Sbjct: 179 PIAALGDALHLILFCGFIVVLGLTPMVGFDVFYQIMSHIKKLRMTKQEIRDEFKDQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPQADVIVTNPTHYAVALQYNENKMSAPKVLAKGAGEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLK 351


>gi|311992333|gb|ADQ26740.1| protein export component [Aeromonas hydrophila]
          Length = 375

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 169/350 (48%), Gaps = 2/350 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D    +TE P+ K+++ A  +G    S+E    S +LA +  LL        ++   L +
Sbjct: 2   DTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKVLTM 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              +  + +  D + ++ +L  L       +    +L  +       +      +   + 
Sbjct: 62  GF-TLDREQAFDPNAMMTMLPALLRELLHPLGLLFMLVAIAAFVGNTLMGGMNFSSEAML 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P + ++S   GIKR++ + +LV  +KS  K++ +       L+  +  +L+         
Sbjct: 121 PKWSKLSPLNGIKRMFGVQSLVELVKSIAKVVFISLFAWWMLSSQFNHLLNLSLEGYPGG 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +  A   +  +LI++   +  +  +D+ +       +LKM+KQE+KDE K S G P +K 
Sbjct: 181 IIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVKG 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKM 303
           R + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG + IA K+
Sbjct: 241 RIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGSAPKVVAKGTDEIAMKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R+IA E+ IP+   P+L R+++    I   IP   + AVAQ++  +Y  K
Sbjct: 301 REIAREYEIPVMPSPALTRAIYHATEIGHEIPEGLFAAVAQVLAYVYQLK 350


>gi|116250471|ref|YP_766309.1| flagellar biosynthesis protein FlhB [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255119|emb|CAK06193.1| putative flagellar biosynthetic protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 365

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/347 (43%), Positives = 235/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  +T  L 
Sbjct: 9   DDDKDSKTEAPTAKKQSDAAEKGNVPSSRELSIFATILATFIYLVFFLPESVGRMTEMLR 68

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    ++ L   +  +++ LV P  +LFM+FG+ S + Q +P   L  +
Sbjct: 69  DIFEQPDQWKIETGPDVLALFVRIGWASAALVAPAFILFMVFGVASSVFQNLPTPVLERI 128

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  LV F KS  K+++VG I+   L   YF  +D + ++P +
Sbjct: 129 RPQASRISPIKGWSRLFSVPGLVEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 188

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 189 ILVRMMAAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 248

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 249 SRQRSLMRDRARRRMIANVDRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 308

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV I+S IP VFYKAVA+LI+++Y
Sbjct: 309 REIAEKNGIPVFEDPPLARSMFAQVSIDSVIPSVFYKAVAELIHRVY 355


>gi|238927446|ref|ZP_04659206.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
 gi|238884728|gb|EEQ48366.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
          Length = 374

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/348 (29%), Positives = 181/348 (52%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     S+      +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDYIYLSIAGYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            ++  Q  + D  +I+ +   +++  ++   P +   M+ G+     Q     N   ++ 
Sbjct: 84  FSNLNQ--VVDAENILRIFIGIAIVLAKTAFPIMFAIMLIGLAINFFQVGLTFNTESIEF 141

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G  RI+S  +LV   KSF KI+++G  +   + E    M  F+  +  + L
Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  +  +++  I  + ++D G+   Q    LKM+KQE+KDE+KQS G+P IK +
Sbjct: 202 SLVAEIIFHMAFIVIGVIMVMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGK 261

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +IITNPTH+A+AL Y Q    AP++VAKGQ+++A+++++
Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHFAIALSYQQG-MSAPLVVAKGQDIVAQRIKE 320

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E  +PI E   LAR+++  V I  AIP   Y+AVA+++  +Y  K
Sbjct: 321 IAREARVPIVENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368


>gi|94264043|ref|ZP_01287843.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
 gi|94266371|ref|ZP_01290070.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
 gi|93453023|gb|EAT03511.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
 gi|93455554|gb|EAT05741.1| Flagellar biosynthetic protein FlhB [delta proteobacterium MLMS-1]
          Length = 356

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +   KTE P+ +++ +A N+G+   S E    + +LA +I L F        VT 
Sbjct: 1   MAEEQSGQEKTEKPTERRLLEARNKGDVAKSMEVPSAAVLLAGVIVLYFTGEYMFNRVTG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L++    ++   S +  +   + L    ++ P +L   +  + +  +Q   +   
Sbjct: 61  MMQFYLSNLHDIEISAAS-MPNITRQVMLLIYTVLWPLMLTVFLAALAANYLQVGFLFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +++   +G+ R++S   L N  KS  K  LVG I    +      +L      
Sbjct: 120 EKITPKLEKIDPLKGLGRLFSKQTLNNAFKSIAKFSLVGYIAYSEIIRAMPEILPLADKA 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P+ IL     T   + +   +    + ++D  +   Q+  K+KM+KQ++KDE KQS G+P
Sbjct: 180 PYPILVFMVETAFWIFLKCAVLFILIALIDYAFQRWQFMEKMKMTKQDMKDESKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +SI     + +MM    +A +++TNPTH A+A++Y      AP ++AKG  ++A
Sbjct: 240 HVKGRIRSIQMEMAKKRMMAEVPKADVVVTNPTHLAVAIKYDALTMKAPEVLAKGAGVVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K++++A EH +P+ E+  LA++L++ V I  +IP   ++AVA+++  +Y+ K
Sbjct: 300 NKIKEVAREHQVPVVEDKPLAQALYQNVEIGGSIPENLFQAVAEVLAYVYNLK 352


>gi|188592105|ref|YP_001796703.1| flagellar biosynthesis protein flhb [Cupriavidus taiwanensis LMG
           19424]
 gi|170938479|emb|CAP63466.1| FlhB: Flagellar biosynthetic protein. flhB/hrpN/yscU/spaS family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 380

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S +++E A  EG    SRE + F  ++A +  L         S+  
Sbjct: 1   MSE-ESDLEKTEPASPRRLEKAREEGQVVRSRELATFVMLIAGVTGLWTLGGHLGRSLNQ 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L         D + ++     +   +    +P LLLF +  + + L+    V + 
Sbjct: 60  VMQGALR-FEPATAFDPARMLSRFALMVWDSLLAFLPLLLLFGVAALAAPLLLGGWVFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F R+S   G+ R++S ++LV  +K+  K +LVG +    L       +  ++A 
Sbjct: 119 KSFAPQFSRLSPIAGLGRMFSAHSLVELLKAVAKSLLVGAVGAWVLWRRLPEAIALMNAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L H    V    +++ L +  +  +D+ W Y +++ KL+M+K+E+K E K+S G+P
Sbjct: 179 VQEALLHMVDLVMFCCLVVSLSLLVVAAIDVPWQYWEFFKKLRMTKEEVKQEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IKNR +   R+  R +MM    +A +++TNPTH+A+ALRY +    AP +VAKG   +A
Sbjct: 239 HIKNRIRQQQRAMARRRMMTEVPKADVVVTNPTHFAVALRYEEGRMGAPRVVAKGTGEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A EH +P+   P LAR+L + V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRALAAEHRVPLMSAPPLARALHRHVELGQEIPAGLYTAVAEVLAWVYQLK 351


>gi|167587841|ref|ZP_02380229.1| flagellar biosynthesis protein FlhB [Burkholderia ubonensis Bu]
          Length = 403

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  +KTEA + ++ E A  EG    SRE + F+ +LA   Y  +  +  I     
Sbjct: 1   MAD-ESDLDKTEAATPRRREKAREEGQVARSRELASFA-LLASGFYGTWLLAGPIGRHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +  +    D + ++     +SL     + P L +  +  + + +     +++ 
Sbjct: 59  TMLRGAFTFDRGIAFDTNRMLTSAGSVSLEGLAALAPLLAMMGVAALLAPMALGGWLISS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +    R++   G+ RI+S+   +    S  K ++VG I  I++  +   +L      
Sbjct: 119 KTFELKLDRLNPITGLGRIFSVQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLAMQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y      AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGAMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|187778764|ref|ZP_02995237.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
           15579]
 gi|187772389|gb|EDU36191.1| hypothetical protein CLOSPO_02359 [Clostridium sporogenes ATCC
           15579]
          Length = 587

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 188/348 (54%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 239 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 298

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 299 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 357

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 358 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLKDNYLKILNLGTLRPWYMI 417

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  ++V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 418 TGLLSLAISIFFKITLIMLFISVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 477

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY +  + AP +VAKG + +A K++ 
Sbjct: 478 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKG-DSAPKVVAKGADYVAIKIKD 536

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 537 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 584


>gi|169827139|ref|YP_001697297.1| flagellar biosynthesis protein FlhB [Lysinibacillus sphaericus
           C3-41]
 gi|168991627|gb|ACA39167.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
          Length = 362

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 181/347 (52%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK +DA  +G    S++ +    +L   I+L FF       + +      
Sbjct: 13  SGEKTEKATPKKRQDARKKGQVVKSQDVTSAIVMLMVFIFLFFFAGSLRDELLAFFRQTF 72

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               + +   I  ++ L     +  + +++P + + ++  +    +Q   +  L  +K  
Sbjct: 73  IHNIRIETLTIDSVMHLFIDTLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFD 132

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K++   +G+KRI+S+  +V  +KS +KI  +G++ TI +  N   +L     +P   L 
Sbjct: 133 LKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSPWITLI 192

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V  + I   L +  +++LD  +    +   LKMSKQ+IKDE K S G+P+IK++ 
Sbjct: 193 TVGKLVGIMGIAASLVLLCVSILDWLYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIKSKI 252

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   R     +MM     A ++ITNPTHYA+AL+Y +   DAP ++AKG + IA+K++ I
Sbjct: 253 KQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEESMDAPRVIAKGTDFIAQKIKLI 312

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EH++ + E   LAR+++ QV I   +P  F+KAVA+++  +Y  K
Sbjct: 313 AKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 359


>gi|327193023|gb|EGE59935.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
           CNPAF512]
          Length = 373

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/347 (42%), Positives = 233/347 (67%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   R+S  +G  R++S+  L+ F KS  K+++VG I+   L   YF  +D + ++P +
Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQT 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL      +RK++I++L+  A + + D  W+ H W+++LKM++ E+K+E KQ+ G+P +K
Sbjct: 197 ILVRMMTAMRKIIIVMLIATAIVAIADFFWTRHHWFTELKMTRHEVKEENKQAQGDPFVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+
Sbjct: 257 SRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 317 REIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 363


>gi|323527726|ref|YP_004229879.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001]
 gi|323384728|gb|ADX56819.1| flagellar biosynthetic protein FlhB [Burkholderia sp. CCGE1001]
          Length = 401

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTE+ + ++++ A  EG    SRE S F+ +LA   + ++  S  I     
Sbjct: 1   MAE-ESDLEKTESATPRRLQKAREEGQIVRSRELSTFA-LLAAGFFGVWGMSGSIGEHLQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +       +   ++      S      ++P L       + + +      L+ 
Sbjct: 59  AMLRAAFTFDHASAFETHRMMAGAGAASREGLYALLPILAFTGAAALLAPMALGGWQLSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R++   G+ +I+SIN  +    S  K ++VG I   ++      +L   +  
Sbjct: 119 KGLEPKFDRLNPIAGLGKIFSINGPIQLGMSLAKTLVVGVIGGTAIWNRREEILALATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L +    +     M +  +  +  LD+ +   Q++ KL+MSK+E+K E ++S G+P
Sbjct: 179 LHLALANTVHLIAVCCGMTVAGMFVVAALDVPYQLWQFHKKLRMSKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMTQVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAENNVPLLEAPPLARALYHNVELNREIPGQLYGAVAEVLAWVYQLR 351


>gi|15596646|ref|NP_250140.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAO1]
 gi|107100883|ref|ZP_01364801.1| hypothetical protein PaerPA_01001913 [Pseudomonas aeruginosa PACS2]
 gi|116049394|ref|YP_791803.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892678|ref|YP_002441547.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa LESB58]
 gi|254234548|ref|ZP_04927871.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719]
 gi|254239799|ref|ZP_04933121.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192]
 gi|296390184|ref|ZP_06879659.1| flagellar biosynthesis protein FlhB [Pseudomonas aeruginosa PAb1]
 gi|313106448|ref|ZP_07792679.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016]
 gi|9947400|gb|AAG04838.1|AE004574_9 flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa PAO1]
 gi|115584615|gb|ABJ10630.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166479|gb|EAZ51990.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa C3719]
 gi|126193177|gb|EAZ57240.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 2192]
 gi|218772906|emb|CAW28718.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa LESB58]
 gi|310879181|gb|EFQ37775.1| flagellar biosynthetic protein FlhB [Pseudomonas aeruginosa 39016]
          Length = 378

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  +A  +G  P SRE +  + ++A    LL + +    ++  
Sbjct: 1   MAESESGQDKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       ++    +   ++ LL   +  A++ + P LL+ ++  I   +     + ++
Sbjct: 61  LMRSNFE-LSRETAMNTESMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSM 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   G+KR++S  +L+   K+ +K ++V  +  + L+ +   +L      
Sbjct: 120 DALQPKFSRLNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +  +D+ +       KL M+KQE++DE K S G P
Sbjct: 180 LEQAILHSVRVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K++ + + R   + +MM A   A ++ITNPTH+A+AL+Y      AP+L+AKG + +A
Sbjct: 240 EVKSKIRQMQREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y  K
Sbjct: 300 LKIREVAQEHKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLK 352


>gi|114566403|ref|YP_753557.1| flagellar biosynthesis/type III secretory pathway protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337338|gb|ABI68186.1| flagellar biosynthesis/type III secretory pathway protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 369

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/350 (28%), Positives = 184/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    KTE  + ++ E+A  +G    S + +    ++A  +     F   + ++ S   
Sbjct: 17  DDGMGEKTEKATPRRREEARKKGQVFKSTDLNSAIILIAGSVASFMAFPYMVNNLKSFTT 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           + L   TQ+   +  +I F+L  + +   +++ P  L   +  +    +Q   V +   +
Sbjct: 77  LYLLQRTQQDFSN-DYIYFMLLEVLIIMGKMIFPIFLTTFIVALLITYLQVGFVFSGESL 135

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P  +R++  EG KRI+S   LV   KS +K+I+ G I+   + ++Y     FI     +
Sbjct: 136 TPKLERLNPVEGFKRIFSKRALVELGKSLLKVIVTGYIVYSVMRKHYILFPRFIDMELIA 195

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L      V ++ + + L    + + D  + +++    LKMSK EIK E KQ+ G+P +K
Sbjct: 196 GLQVLSSIVFEMAMKVGLVFIIIGIADYIFQWYEHEKSLKMSKYEIKQEYKQTEGDPQLK 255

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +RQ+ I R     +MM    +A ++ITNPTH+A+ L+Y  ++ +APV+VA+G++ +A K+
Sbjct: 256 SRQRRIQRDIAMQRMMAEVPKADVVITNPTHFAVVLKYEASKMEAPVVVARGKDFMALKI 315

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++IA  H + I E P LAR+L+    I   +P   Y+AVA+++  +Y +K
Sbjct: 316 KEIARMHGVVIVENPVLARTLYYNTEIGDLVPEELYQAVAEVLAFVYKQK 365


>gi|290474957|ref|YP_003467841.1| putative part of export apparatus for flagellar proteins
           [Xenorhabdus bovienii SS-2004]
 gi|289174274|emb|CBJ81064.1| putative part of export apparatus for flagellar proteins
           [Xenorhabdus bovienii SS-2004]
          Length = 383

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  +G    S+E +    ++   + LL+     I    S
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKARKDGQIARSKELTSILMLVGG-VSLLWMSGNSITHELS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +     + +   ++  +  L   A   ++P  +  ++  + +  +    + + 
Sbjct: 59  LMVFEGFNFDHNMVSNDKQMIQQVGRLLKQAVWALLPVFVGLVLVALSAPTLMGGLIFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    ++S   G+K+I+S+N L    K+ +K  LVG    + +  N+  ML+  +  
Sbjct: 119 KSIKFDLAKLSPISGLKKIFSMNALAELFKAILKASLVGGGTALFIWLNWPAMLNLTAQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   +     ++L  +  +   D+ +       KL+M++QEIKDE K+  G+P
Sbjct: 179 PLMALSDAMMMLIFAGYIVLFMLIPMVAFDVLYQIRSHLKKLRMTRQEIKDEFKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG  LIA
Sbjct: 239 HVKARIRQQQRAAARKRMMSDVPKADVIVTNPTHYAVALQYDSKKMGAPKVLAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++++I  E+ IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIKEIGAENRIPLLEAPPLARALFRHAEVGGFIPATLYAAVAEVLAWVYQLK 351


>gi|157371217|ref|YP_001479206.1| flagellar biosynthesis protein FlhB [Serratia proteamaculans 568]
 gi|157322981|gb|ABV42078.1| flagellar biosynthetic protein FlhB [Serratia proteamaculans 568]
          Length = 398

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   K+EAP+  ++E A  +G  P SRE +    ++A L  +    S     +   L 
Sbjct: 18  EDSDLEKSEAPTPHRVEKAREDGQIPRSRELTSVLMLVAGLSIIWVAGSNMSQQLAMMLT 77

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L +     + +   ++  L  L   A   ++P +    +  I + ++    +L+   +
Sbjct: 78  QGL-NFDHSMVSNDKQMLRQLGMLLRQAVWALLPVMAGLTLVAITAPMLLGGLLLSGKSL 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K   KR++   G+KRI+S   L   +K  +K  LVG +  + L  N+  ML  ++  P  
Sbjct: 137 KFDLKRMNPLTGLKRIFSSQVLAELLKGILKATLVGWVTGLYLWHNWAAMLHLVTQQPLD 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L +A   +    ++++L +  +   D+ +     + KLKM+KQ+I+DE K   G+P +K
Sbjct: 197 ALANALQMIIFCGLLVVLALTPMVAFDVFYQLWSHFKKLKMTKQDIRDEFKDQEGDPHVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG   IA ++
Sbjct: 257 GRIRQQQRAIARRRMMADVPKADVIVTNPTHYAVALQYNDKKMSAPKVLAKGAGEIALRI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++  +H IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 317 RELGMQHRIPMLEAPPLARALYRHSEIGQHIPATLYAAVAEVLAWVYQLR 366


>gi|317492437|ref|ZP_07950866.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919776|gb|EFV41106.1| flagellar biosynthetic protein FlhB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 383

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/353 (31%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE P+S K+E A  +G  P SRE +    + A +  LL         + +
Sbjct: 1   MSE-DSDLEKTEDPTSHKLEKAREKGQVPRSRELTSMLMLAAGISILLIGGEHLARQLAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    Q  + +   ++  L +L   A   ++P LL  M+ G  + ++      N 
Sbjct: 60  MISQGL-QFDQLLISNDKQMLRQLGNLLQQAVAALMPVLLGLMLVGWAAPMLIGGFFFNP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    ++SL  G+KR++S   L   +K  +K+ILV  +    L   +  ML  I+ +
Sbjct: 119 GSIKFDLSKMSLLSGLKRLFSSQALAELLKGVLKVILVSWVAGWFLWHYWGQMLALIAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   +  A   +    ++I+L +  +   D+ +      +KLKM+KQEIKDE K+  G+P
Sbjct: 179 PLDAMGDALHLIGMCGLLIVLGLVPMVAFDVFYQIWSNLNKLKMTKQEIKDEFKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   IA
Sbjct: 239 HVKGRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++++  +H IP  E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIKELGNQHRIPQLEAPPLARALYRHSEIGHHIPATLYAAVAEVLAWVYQLK 351


>gi|126653730|ref|ZP_01725648.1| flagellar biosynthesis protein B [Bacillus sp. B14905]
 gi|126589694|gb|EAZ83830.1| flagellar biosynthesis protein B [Bacillus sp. B14905]
          Length = 365

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 182/347 (52%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK +DA  +G    S++ +    +L   I+L+FF       + +      
Sbjct: 16  SGEKTEKATPKKRQDARKKGQVIKSQDVTSAIVMLMVFIFLIFFAGSLRDELLAFFRQTF 75

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               + +   I  ++ L     +  + +++P + + ++  +    +Q   +  L  +K  
Sbjct: 76  IHNIRIETLTIDSVMHLFIETLIQMAFIIVPIMAIAVVGALAGNFLQFGFLFTLEPMKFD 135

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K++   +G+KRI+S+  +V  +KS +KI  +G++ TI +  N   +L     +P   L 
Sbjct: 136 LKKMDPIKGLKRIFSVKAIVELLKSVLKIGFIGSVTTIIIWTNLPEVLALSFKSPWMTLI 195

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V  + I   L +  +++LD  +    +   LKMSKQ+IKDE K S G+P+IK++ 
Sbjct: 196 TVGKLVGIMGIAASLVLLCVSILDWMYQKFDYEKNLKMSKQDIKDEYKNSEGDPLIKSKI 255

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   R     +MM     A ++ITNPTHYA+AL+Y +   DAP ++AKG + IA+K++ I
Sbjct: 256 KQRQREMAMRRMMSEIPSADVVITNPTHYAIALKYDEENMDAPRVIAKGTDFIAQKIKLI 315

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EH++ + E   LAR+++ QV I   +P  F+KAVA+++  +Y  K
Sbjct: 316 AKEHDVIMVENRPLARAMYDQVEIGDPVPEEFFKAVAEILAYVYRIK 362


>gi|74317263|ref|YP_315003.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056758|gb|AAZ97198.1| Flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 390

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   +TEAPS +++E A  EG    SRE + F  ++     L    S    +++ 
Sbjct: 1   MAE-ESDQERTEAPSPQRLEKAREEGQVLQSRELATFVVLMTGGAALWAMASQLGQTLSQ 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L         D +H++  L+     A+  + P LLL ++    S ++ R  + + 
Sbjct: 60  IVRGGL-QFHPAVARDSAHVMTQLSQQFFDATLALAPFLLLVVIATFASPILLRGWLFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P FKR+S   G KR++S   LV  +K+  K+ L+G +    +  N   ++      
Sbjct: 119 KAFMPDFKRLSPLAGFKRMFSSQGLVELVKALAKVGLLGGVAAWLVWSNVEAIVSLSLEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + H    + KV ++    +  + VLD+ +    +Y+KLKM+K++++ E K+S G+P
Sbjct: 179 PTAAIGHMGDIIGKVFLLASGAMIFIVVLDLPYQLWNFYNKLKMTKEQLRQEAKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R ++  R   R +MM     A +++TNPTHYA+AL+Y + +  AP +VAKG +L+A
Sbjct: 239 HVKARIRAQQREVARRRMMAEVPSADVVVTNPTHYAVALKYSEGKMGAPRVVAKGADLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH +P+ E P LAR+LF+   I + IP   Y AVA+++  ++  +
Sbjct: 299 AKIREIAAEHRVPLLEAPPLARALFRHTDIGNEIPATLYAAVAEVLAYVFQLR 351


>gi|85859183|ref|YP_461385.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus
           SB]
 gi|85722274|gb|ABC77217.1| flagellar biosynthesis pathway component [Syntrophus aciditrophicus
           SB]
          Length = 354

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    +TE  + K+ E+A  +G    SR+ +  + + ACL+Y  F  +  ++ +  
Sbjct: 1   MAESNKDQERTEEATPKRREEAREQGQVAKSRDLASVAILSACLLYFYFGANSFLHQLM- 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL     S+    L    +I  LL         L+ P LL+  +  + S ++Q    ++ 
Sbjct: 60  DLMKSSFSSLDSSLVTTENIQSLLFSAFYKTITLMTPFLLVVCIAALSSNILQVGFKIST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++   +G  R++S+ +L+ F+KS  KI + G +  +++      +L    ++
Sbjct: 120 KAIAPKLSKIDPAKGFARLFSLQSLIEFIKSIFKISIAGFVAYLTVKSELVDILPLADSS 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              IL +   T  ++L+     +  L ++D  +   ++   LKMS+QEIKDE KQ+ G+P
Sbjct: 180 VWEILVYITGTSFRILLTTCWVLIILALMDYLYQRWEYERNLKMSRQEIKDENKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K R + + R   + +MM    +A +IITNPTH A+AL+Y Q    AP ++AKG   +A
Sbjct: 240 IVKARIRRLQREMAQRRMMANVPKADVIITNPTHLAVALQYDQDSMIAPKVIAKGAGYLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++IA E  +P+ E   LA+ L+K V ++  IP   YKAVA+++  IY  K
Sbjct: 300 EKIKEIARESRVPLVENKPLAQVLYKMVEVSGTIPDSLYKAVAEILAYIYSIK 352


>gi|119469999|ref|ZP_01612804.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7]
 gi|119446709|gb|EAW27982.1| flagellar biosynthesis protein B [Alteromonadales bacterium TW-7]
          Length = 376

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+ KKIE++  +G    S+E      ++   I LL +       + +
Sbjct: 1   MAE-DSGQEKTEEPTGKKIEESKKKGQVARSKELGTMFVLIFSAISLLMYGPEIGKGLYN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +L S  + +  D + +  + + ++ +    +   + + +  GI    +      + 
Sbjct: 60  IMGRML-SLNRNETYDTTKMFAVWSSVADALIFPMAMFVFIILFAGIIGNTLLGGFNFSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S  +G KR++     V   K+ +K ++V +     +   +  +L     +
Sbjct: 119 QAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFLVVASFAFFLINTFFDEILHLSIES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + + HA   +  + + +   +  +  +D  +  H  + +LKM+ QE+KDE K S G+P
Sbjct: 179 APNNIIHALEILSWMFLALSCTLVIIAAIDAPYQSHTHHKQLKMTLQEVKDEYKNSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   + +MM+    A +++TNPTHY++AL+Y      AP+++AKG + +A
Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVVVTNPTHYSVALKYDTERAGAPIVLAKGVDELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++RK+A  +++PI E P L R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MQIRKVAGGNDVPIVESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351


>gi|330502779|ref|YP_004379648.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
 gi|328917065|gb|AEB57896.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
          Length = 378

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +K+E P+ K++E++  +G    S+E +  +  L   + L+ F +     +  
Sbjct: 1   MAESESGADKSEEPTGKRLEESRKKGQIARSKELNTLAVTLTGTVALIIFGAYMGNVLMD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +    +   +  + + S  ++LL      A   V P LL  ++  +   +     + + 
Sbjct: 61  IMRGNFSLPREVLMSERSMALYLLAS-GKEALLAVQPFLLALLIASVAGPIALGGWLFSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R++   G+KR++S+  LV  +K+  K +++  +  + L  +   +L   +  
Sbjct: 120 EALQPKASRMNPLAGLKRMFSVQALVELVKALAKFLVILAVALVVLAIDQDDLLAIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +  +D+ +       KL M+KQE++DE K + G P
Sbjct: 180 VEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQKLMMTKQEVRDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     +MM+A  +A ++ITNPTH+A+AL+Y   +  AP+L+AKG + +A
Sbjct: 240 EVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAPMLLAKGGDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAQEHQVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352


>gi|92114138|ref|YP_574066.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens
           DSM 3043]
 gi|91797228|gb|ABE59367.1| flagellar biosynthetic protein FlhB [Chromohalobacter salexigens
           DSM 3043]
          Length = 387

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+ + KTE P+ ++++ A  +G    SRE + F  +LA  +  L+     +Y    
Sbjct: 1   MAE-DSDEEKTEDPTPRRLDKAKEDGEVARSRELTTFM-LLAVGVGSLWSLGGHLYDRMG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       ++ +  D + ++  +  L  +    ++P  L+  +  + + ++    +++ 
Sbjct: 59  VVMEQSFLFSRAEAFDTAVLMAHVWTLGQNTLLALLPLFLIVTVVALTAPVMLGGWLISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++  +G KR++S   L    K+  K +LVG +    L  N   +L  +S  
Sbjct: 119 KALQPQISKLNPLKGFKRMFSSQVLAELGKAVAKSVLVGGVAVAFLWLNRGDLLGLMSLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L          L + +  +  + ++D+ +    +  KL+M+K EIK E K++ G+P
Sbjct: 179 LSEALARGMDLAALCLSLCVAMLIVVVLIDVPFQLWSFTKKLRMTKDEIKKEHKETEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R ++  +S  R +MM     A +I+TNPTHYA+AL Y  +  +AP +VAKG +L+A
Sbjct: 239 QVKARMRAQQQSMARRRMMAKVPEADVIVTNPTHYAVALSYEGSYMEAPRVVAKGSDLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++   H +P+ E P LAR+L + V I+  +P   Y AVA+++   Y  K
Sbjct: 299 TRIRELGEAHGVPLLEAPPLARALHQHVDIDQEVPATLYTAVAEVLAWAYRLK 351


>gi|114332395|ref|YP_748617.1| flagellar biosynthesis protein FlhB [Nitrosomonas eutropha C91]
 gi|114309409|gb|ABI60652.1| flagellar biosynthetic protein FlhB [Nitrosomonas eutropha C91]
          Length = 376

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    +TE  S +++E +  EG    S+E + F+ ++A    L    S  I  +++
Sbjct: 1   MAD-DNDLERTEPASPRRLEKSREEGQVARSQELTTFTMLMAASGSLWVIGSLIIQKLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +    + + ++  L  L+L     + P L   ++  + S ++    + + 
Sbjct: 60  LLESGL-QIEREVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIVALVSPMLLSGWLFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P FKR++   G KRI+S + L+  +K+  K  ++G +    +  +   +LD I   
Sbjct: 119 KALFPDFKRLNPVNGFKRIFSSHGLIELVKAIAKAAVIGGVAAGIIWSHKQDVLDLIGMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L      +    ++I+  +  L V+D+ +       +L+MSK++++ E K+  G+P
Sbjct: 179 LDTGLTSMGRLIGLTFMLIVGAMLLLVVIDVPFQLWNHARQLRMSKEDLRKEAKEDEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+ R   R +MM    RA +++TNPTHYA+AL+Y      AP +VAKG  LIA
Sbjct: 239 QVKARIRSMQREMARRRMMAEVPRADVVVTNPTHYAVALKYQDHSMRAPKVVAKGSQLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH+IP+ E P LAR+L+  V +++ IP   Y AVA ++  ++  +
Sbjct: 299 ARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYVFQLR 351


>gi|74055047|gb|AAZ95852.1| FlhB [Aeromonas hydrophila]
          Length = 376

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 168/351 (47%), Gaps = 2/351 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    +TE P+ K+++ A  +G    S+E    S +LA +  LL        ++   L 
Sbjct: 2   DDTDQERTEQPTGKRLQQAREKGQIARSKELGTASVLLAAVFGLLMVKESLAGAMVKILT 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +   +  + +  D + +  ++  L       +    +L  +       +      +   +
Sbjct: 62  IGF-TLDRDQAFDPNAMGAMVPALLRELLHPLGLLFMLVAIAAFIGNTLMGGMNFSSEAM 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P + ++S   GIKR++ + +LV  +KS  K++ +       L+  +  +L+        
Sbjct: 121 LPKWSKLSPLNGIKRMFGVQSLVELIKSIAKVVFITLFAWWMLSSQFNHLLNLSLEGYPG 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            +  A   +  +LI++   +  +  +D+ +       +LKM+KQE+KDE K S G P +K
Sbjct: 181 GIIDALDLLLWMLIILCCALIPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKPEVK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKK 302
            R + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG + IA K
Sbjct: 241 GRIRRLQMEMAMRRMMGDVPKADVVITNPTHYSVALKYDTAKPGAAPKVVAKGTDEIAMK 300

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +R+IA E+ IPI   P L R++F    I   IP   + AVAQ++  +Y  K
Sbjct: 301 IREIAREYEIPIMPSPGLTRAIFHSTEIGHEIPEGLFAAVAQVLAYVYQLK 351


>gi|289208350|ref|YP_003460416.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix]
 gi|288943981|gb|ADC71680.1| flagellar biosynthetic protein FlhB [Thioalkalivibrio sp. K90mix]
          Length = 383

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN++   KTE P+ K++ +A  +G  P SRE S F  ++A   ++ FF       +  
Sbjct: 1   MAENESGQEKTEQPTPKRLREAKEKGQVPRSRELSTFLVLMAAGGFMTFFGPTLGGQLAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                     +    D S ++  L+       R ++P   + M+  + + ++      + 
Sbjct: 61  QTAGRF-DIERDLAYDSSLLLPYLSEQIFMTLRTLLPLFGVLMVAAVLAPILIGGANFSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              KP   +++  +G+KRI+S   L+ F K+F K +LV  +    L      +L      
Sbjct: 120 QAAKPKASKLNPLKGLKRIFSWQGLMEFGKTFAKFVLVAGVAMSVLWTFSDRLLMLGYEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + HA        + +   +  +  +D  +       +L+M++QE+KDE K++ G P
Sbjct: 180 LEQAITHAAQLALGTFVAVSAALILVAAIDAPFQMWNHQKQLRMTRQELKDEYKETDGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + +   + +MME   +A ++ITNPTHYA+A+ Y  +   AP LVAKG + +A
Sbjct: 240 EVKQKIRQLQQEMAQRRMMEEVPKADVVITNPTHYAVAITYEASRMAAPKLVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R +A EH I   E P +AR+++    +N  IP   + AVA+++  +Y  K
Sbjct: 300 ASIRAVADEHKIIRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQLK 352


>gi|119897394|ref|YP_932607.1| flagellar biosynthesis protein FlhB [Azoarcus sp. BH72]
 gi|119669807|emb|CAL93720.1| flagellar biosynthetic protein FlhB [Azoarcus sp. BH72]
          Length = 381

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/352 (28%), Positives = 183/352 (51%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  S +++E A  EG  P SRE S F   +  ++ L          +  
Sbjct: 1   MAE-DSDLEKTEPASGRRLEQAREEGQVPQSRELSTFLVTMTGVVTLWLLGEWMAQRLLG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +    A   +    D + I+  L  L   A   ++P  L  ++  + S +     V   
Sbjct: 60  MIRRSFA-FEREMAFDHTLILAELQSLLGGALLTLMPLFLALLVAAVASPIALGGLVFAP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F R++  +G+ R++S++ L   +K+ +K +LVG +    L      + D +   
Sbjct: 119 KALGPNFGRMNPIQGLGRMFSVHGLAEMVKAILKALLVGGVGAAVLWYYKDHLFDLMVEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +     TV    ++I   +  L +LD+ +   Q++ +L+M+K+E+K E K+  G+P
Sbjct: 179 LEVGMPDFAETVVFTALLITASLGLLALLDVPFQLWQYHKRLRMTKEEVKREAKEQDGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +++ R   R +MM A  +A +++TNPTH+++AL+Y      APV+VAKG+  +A
Sbjct: 239 QLKGRIRAMQREMARGRMMAAVPKADVVVTNPTHFSVALKYDAERMGAPVVVAKGRGELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA E+++P+ E P LAR+L+    +  AIP   Y AVA+++  +Y  
Sbjct: 299 MKIREIARENDVPLLEAPPLARALYAHCELEQAIPAALYTAVAEVMAYVYQL 350


>gi|90411036|ref|ZP_01219050.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
 gi|90328249|gb|EAS44560.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
          Length = 376

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  +++K+E A  +G    S+E +  + ++   + L+ ++  G+    +
Sbjct: 1   MAESD-GQERTEDATARKLEQAREKGQVARSKELASVAVLVMGAVSLM-WYGEGLGKALA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++   + S ++ ++ D++ +  ++     S    +   L++     +           + 
Sbjct: 59  EIMTQMFSLSREEIYDLNRLFSIMLTAIWSVVFPLGLVLIVLFTAALIGAAGLGGVSFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ + + V  +KS +K++LV  +    +  +           
Sbjct: 119 EAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVTGVAAYLMYSSLNDFFLLSLEI 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S ++HA   + + +++I   +  +  +D+ +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPSNIFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY    + AP+++AKG +  A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIITNPEHFSVALRYDPKLDSAPIVIAKGVDHAA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA +HNI I   P LAR+++    +   IP   + AVAQ++  I+  K
Sbjct: 299 LKIREIANKHNIDIVPAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351


>gi|304438443|ref|ZP_07398383.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368526|gb|EFM22211.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 374

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 180/348 (51%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     S+ S    +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFTLKLLWDSIYLSIASYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +  Q    D  +I+ +   + +  ++   P +   M+ G+     Q     N   ++ 
Sbjct: 84  FTNLNQSV--DTENIIHIFIGIIVVLAKTAFPVMFAIMLIGLAINFFQVGLTFNTESIEF 141

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G  RI+S  +LV   KSF KI+++G  +   + E    M  F+  +  + L
Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++  +++  I  + ++D G+   Q    LKM+KQE+KDE+KQS G+P IK +
Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMALMDYGYQKWQTTQDLKMTKQEVKDEMKQSEGDPQIKGK 261

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +I+TNPTHYA+AL Y Q    AP++VAKGQ+L+A+++++
Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIVTNPTHYAIALSYQQG-MSAPLVVAKGQDLVAQRIKE 320

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E  +PI E   LAR+++  V I  AIP   Y+AVA+++  +Y  K
Sbjct: 321 IAREARVPIIENKPLARAIYAAVQIGDAIPQELYQAVAEVLAYVYRLK 368


>gi|261407965|ref|YP_003244206.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
 gi|261284428|gb|ACX66399.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
          Length = 362

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S E S  S +LA    LL F              +  
Sbjct: 14  GEKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYI 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +     +    +++ L     +    L+ P  +   +  + +  +Q   +L    +K  F
Sbjct: 74  NRLSMNVTK-DNVMELFGEYGVQILLLLAPLFISIFVIALVANYLQVGFMLTGETLKMKF 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++   +G K I+S+ +LV F+KS +K+ ++G ++  +L      +    +  P +I + 
Sbjct: 133 SKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGPDTIFHF 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  +   I + +  L VLD  +  + +   ++MSKQ+IKDE K+  G+P+IK + +
Sbjct: 193 VADITMSLGFKIAIGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPLIKGKIR 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A +IITNPTH+A+A++Y  +  +AP ++AKGQ+ +A ++++IA
Sbjct: 253 ERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMALRIKEIA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH I   E   LAR+L+++  I  +IP   ++AVA+++  +Y  K
Sbjct: 313 KEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 358


>gi|170757192|ref|YP_001782263.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum B1 str. Okra]
 gi|169122404|gb|ACA46240.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B1
           str. Okra]
          Length = 609

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|187478176|ref|YP_786200.1| flagellar biosynthesis protein FlhB [Bordetella avium 197N]
 gi|115422762|emb|CAJ49290.1| flagellar biosynthetic protein [Bordetella avium 197N]
          Length = 380

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D+   KTEA S +++E A  EG    SRE + F  +LA  +  L+   P +Y   S
Sbjct: 1   MAD-DSDLEKTEAASPRRLEKAREEGQIARSRELTTFL-MLAAGVGGLWLVGPSLYRGLS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +         R   D + +V         A   ++P   + ++  +   ++    V + 
Sbjct: 59  GVMRDGMGFDPRITHDTTAMVNQAVIGFGQAIWAILPVFGILVVAALLGSVMLGGLVFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++    +++   G+KRI+S   LV  +K+  K +LVG +    +   +  ML  +   
Sbjct: 119 KPLEFKASKLNPLSGLKRIFSSQTLVELIKASAKALLVGGVAGWVIWRYHDEMLGLMHVP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   V      I+  +  + ++D+ W       KL+MSK++++ E K+S G+P
Sbjct: 179 PPAALASALKLVVLCCAFIVSSLMLVVLIDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R+  R +MM    RA +++TNPTHYA+AL Y ++   AP ++AKG  L+A
Sbjct: 239 HIKARIRQQQRAAARRRMMSQVPRADVVVTNPTHYAVALSYDESGGGAPTVIAKGTGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++  +
Sbjct: 299 ARIRELAAEHRIPTLEAPPLARALHQHVELGHEIPAALYTAVAEVLAWVFQLR 351


>gi|83654182|gb|ABC38245.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis
           E264]
          Length = 459

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 61  EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 120

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     ++P L L  +  + + +     +++    
Sbjct: 121 TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 179

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 180 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 239

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 240 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 299

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 300 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 359

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 360 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 409


>gi|254522000|ref|ZP_05134055.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14]
 gi|219719591|gb|EED38116.1| flagellar biosynthetic protein FlhB [Stenotrophomonas sp. SKA14]
          Length = 377

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 174/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSEN++   KTE P+ K++ DA  +GN P SRE    +   A ++ ++          T+
Sbjct: 2   MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGATA 61

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L S  Q   ++   +      L L    ++ P +L+ ++    + L+      + 
Sbjct: 62  WMKHAL-SPEQSLRQNPKELFGHFGDLLLQFLLVIAPLVLVCLLASFVAPLVMGGLRWSQ 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+KR+Y    +  F KS +++  VG    + +   + T+   I   
Sbjct: 121 KALLPDINRLNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +        ++L+     +  L  +D  +    W  KLKM+++E++ E+K+S G+P
Sbjct: 181 LETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + +     +MMEA   A +++ NPTHYA+AL+Y     +AP +VA G +  A
Sbjct: 241 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPTVVALGVDETA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  + + I   P LAR+L+++  +   IP   Y AVAQ++  +Y  +
Sbjct: 301 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 353


>gi|322806976|emb|CBZ04546.1| flagellar biosynthesis protein FlhB [Clostridium botulinum H04402
           065]
          Length = 609

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGTNELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|148380604|ref|YP_001255145.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
           str. ATCC 3502]
 gi|153931538|ref|YP_001384891.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937825|ref|YP_001388360.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum A str. Hall]
 gi|148290088|emb|CAL84207.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927582|gb|ABS33082.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
           str. ATCC 19397]
 gi|152933739|gb|ABS39238.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A
           str. Hall]
          Length = 609

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|326796452|ref|YP_004314272.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea
           MMB-1]
 gi|326547216|gb|ADZ92436.1| flagellar biosynthetic protein FlhB [Marinomonas mediterranea
           MMB-1]
          Length = 378

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 190/353 (53%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE  SSKK++DA  +GN   S++ S  + ++   + + +F    +     
Sbjct: 1   MAENEDGTEKTEDASSKKLDDARKKGNVARSKDLSSAALLIVAAMSI-YFTGRILAIDLG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L        ++ L D + ++F L   ++     +I  + +  + GI   +       + 
Sbjct: 60  NLFHFNFVIERQDLFDKARMIFHLYESAVGVIDSMILLMGVLAVAGIVGSIGIGGLNFSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KRI S+ +LV  +KS  K++LVG+I T+ +      +L     +
Sbjct: 120 EPLTPKLSKLNPISGLKRIASVQSLVELLKSIAKVLLVGSIATVVIMLYLPELLGLPFES 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + + H+   +    I + L +  +  +DI +   +  + LKM+KQE+KDE KQ+ G+P
Sbjct: 180 VGNAVQHSTEVLIWAFIFVSLALVFIAAIDIPFQIWKHSNDLKMTKQEVKDEHKQAEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + +    ++MM    +A +IITNPTH+++AL+Y  T +DAPV++AKG + IA
Sbjct: 240 QVKGRIRQMQQQMAMNRMMSDVPKADVIITNPTHFSVALKYDTTSSDAPVVLAKGPDFIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  + IP+ + P L R+++K   +   +P   +K VAQL+  ++  K
Sbjct: 300 MKIREVANFYEIPVIQSPDLTRAIYKHTEVGEQVPEGLFKVVAQLLAYVFQLK 352


>gi|262276382|ref|ZP_06054191.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
 gi|262220190|gb|EEY71506.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
          Length = 377

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END    +TE  + ++ + A  +G  P SRE +  + ++   + L++F      ++ +
Sbjct: 1   MAEND-GQERTEDATPRRQQQAREKGQVPRSRELASVAVLVVGAVALMWFGESLGNALMA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  + T+ ++ D++ +  +           +   LL+  + G+           + 
Sbjct: 60  MMRKLF-TLTREEIFDVTSLGLIGYGAIFHIFWPITFILLMLFIAGLIGASALGGVSFSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +P   ++S  +GIKR++   + V  +KS +K+ LV  +    +  +           
Sbjct: 119 EAARPKLSKMSPLQGIKRMFGKQSWVELIKSILKVALVSGVAFYLMWASLNDFYQLSIET 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + LYHA   +   +++I   +  +  +D+ +   Q   +LKM+KQEIKDE K++ G P
Sbjct: 179 FPTNLYHALDILLNFVLLICCSLLVVVAIDVPFQIWQHNEQLKMTKQEIKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A ++ITNP HY++ALRY    + APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREMAQRRMMAEVPSADVVITNPEHYSVALRYDSKMDKAPVVVAKGSDFLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+I I   P LAR+++    +   IP   + A+AQL+  ++  K
Sbjct: 299 LKIREIAAEHDITIVPAPPLARAVYYSTELEQQIPDGLFTAIAQLLAYVFQLK 351


>gi|237796086|ref|YP_002863638.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
           str. 657]
 gi|229263066|gb|ACQ54099.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Ba4
           str. 657]
          Length = 609

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|170761528|ref|YP_001787967.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408517|gb|ACA56928.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A3
           str. Loch Maree]
          Length = 609

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + IP+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEIPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|168180929|ref|ZP_02615593.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
           NCTC 2916]
 gi|182668325|gb|EDT80304.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum
           NCTC 2916]
          Length = 609

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAIALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|329929309|ref|ZP_08283062.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5]
 gi|328936678|gb|EGG33121.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. HGF5]
          Length = 365

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S E S  S +LA    LL F              +  
Sbjct: 17  GEKTEKATPKKRQDTRKKGQVAKSMEVSGASVLLAAFFCLLIFGGYMRDRTVRLFTDIYI 76

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +     +    +++ L     +    L+ P  +   +  + +  +Q   +L    +K  F
Sbjct: 77  NRLSMNVTK-DNVMQLFGEYGVQILLLLAPLFISIFVIALVANYLQVGFMLTGETLKMKF 135

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++   +G K I+S+ +LV F+KS +K+ ++G ++  +L      +    +  P +I + 
Sbjct: 136 SKIDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVYSTLWAAREDLSSLSTMGPDTIFHF 195

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  +   I + +  L VLD  +  + +   ++MSKQ+IKDE K+  G+P+IK + +
Sbjct: 196 VADITMSLGFKIAVGLIILAVLDYMYQKYDYEKNIRMSKQDIKDEYKKMEGDPLIKGKIR 255

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A +IITNPTH+A+A++Y  +  +AP ++AKGQ+ +A ++++IA
Sbjct: 256 ERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDGSTMEAPQIIAKGQDFMALRIKEIA 315

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH I   E   LAR+L+++  I  +IP   ++AVA+++  +Y  K
Sbjct: 316 KEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVAEVLAYVYKLK 361


>gi|76581465|gb|ABA50940.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1710b]
          Length = 470

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 72  EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 131

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 132 TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 190

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 191 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 250

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+EIK E +++ G+P +K
Sbjct: 251 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 310

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 311 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 370

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 371 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 420


>gi|121601443|ref|YP_994701.1| flagellar biosynthesis protein FlhB [Burkholderia mallei SAVP1]
 gi|124383615|ref|YP_001027675.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC
           10229]
 gi|126450428|ref|YP_001082647.1| flagellar biosynthesis protein FlhB [Burkholderia mallei NCTC
           10247]
 gi|238563575|ref|ZP_00438645.2| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse
           4]
 gi|251767891|ref|ZP_02268743.2| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20]
 gi|254175097|ref|ZP_04881758.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
           10399]
 gi|254186354|ref|ZP_04892871.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194732|ref|ZP_04901163.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13]
 gi|254201433|ref|ZP_04907797.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH]
 gi|254206775|ref|ZP_04913126.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU]
 gi|254357202|ref|ZP_04973476.1| flagellar biosynthetic protein FlhB [Burkholderia mallei
           2002721280]
 gi|121230253|gb|ABM52771.1| flagellar biosynthetic protein FlhB [Burkholderia mallei SAVP1]
 gi|124291635|gb|ABN00904.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC
           10229]
 gi|126243298|gb|ABO06391.1| flagellar biosynthetic protein FlhB [Burkholderia mallei NCTC
           10247]
 gi|147747327|gb|EDK54403.1| flagellar biosynthetic protein FlhB [Burkholderia mallei FMH]
 gi|147752317|gb|EDK59383.1| flagellar biosynthetic protein FlhB [Burkholderia mallei JHU]
 gi|148026266|gb|EDK84351.1| flagellar biosynthetic protein FlhB [Burkholderia mallei
           2002721280]
 gi|157934039|gb|EDO89709.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696142|gb|EDP86112.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
           10399]
 gi|169651482|gb|EDS84175.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei S13]
 gi|238520421|gb|EEP83881.1| flagellar biosynthetic protein FlhB [Burkholderia mallei GB8 horse
           4]
 gi|243061442|gb|EES43628.1| flagellar biosynthetic protein FlhB [Burkholderia mallei PRL-20]
          Length = 401

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D + ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|90406806|ref|ZP_01214998.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
 gi|90312043|gb|EAS40136.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
          Length = 379

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    ++E  + ++I  +  +G    S+E +  S +++  I ++ F     Y ++ 
Sbjct: 1   MAENENGTERSEEATPERIRKSKEKGQVARSKELATASVLISAAIAMMTFGGRLAYELSI 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +  +  L    +I   L+      +  +   L +  +  I    +    + + 
Sbjct: 61  MMKRSF-TFERSVLFSPEYIWLHLSTSFYGLAWPMFIILFMLFVISILGSSLLGGMLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P + R+S + G+KR+  +   V  +KS +K+++V       L   +  +L    ++
Sbjct: 120 KALMPKWNRLSPKAGLKRMLGMQAWVELLKSILKVLVVVGAAWWILGATFEHILHLSVSS 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +Y A   +  + +M+   +  +  +D+ +  ++   +LKM+KQEIKDE + S G P
Sbjct: 180 LPGSVYEALDMLLWMFLMLCCSLLIIVAIDVPYQIYKHKEELKMTKQEIKDEYRNSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + KMME    A +I+TNPTHY++AL+Y Q    AP +VAKG + +A
Sbjct: 240 EVKQRIRQLQYEASQRKMMEDVPDADVIVTNPTHYSVALKYEQNGERAPYVVAKGVDFMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A ++ IP+ E P L R+++    IN  +P   + A+AQ++  IY  +
Sbjct: 300 LKIREVARDNEIPVMESPPLCRAIYHTTEINEEVPEELFIAIAQILAYIYQLE 352


>gi|323158635|gb|EFZ44649.1| flagellar biosynthetic protein FlhB [Escherichia coli E128010]
          Length = 382

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V   +++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCVLLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A
Sbjct: 238 HVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|320325130|gb|EFW81199.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329389|gb|EFW85382.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 378

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 188/353 (53%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++  +   
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|226950059|ref|YP_002805150.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
           str. Kyoto]
 gi|226843732|gb|ACO86398.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum A2
           str. Kyoto]
          Length = 609

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|260776470|ref|ZP_05885365.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607693|gb|EEX33958.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 376

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      ++ +
Sbjct: 1   MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVIGAIALMWFGESLARALYT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  +      S    ++  L++  +  +           ++
Sbjct: 60  VMGRLF-DLSRDEIFDLPKLFDIALGSMGSLLGPLLLILVVLFIAALIGAAGIGGISFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P + +++   G+KR+  + + V  +KS +K+ LV  +    +      +       
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELLKSILKVTLVSGVAFYLIDAAQEDLFQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMSEVPQADVIVTNPEHFSVALRYKQDTDKAPIVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351


>gi|222147560|ref|YP_002548517.1| flagellar biosynthesis protein FlhB [Agrobacterium vitis S4]
 gi|221734548|gb|ACM35511.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
          Length = 361

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/350 (45%), Positives = 239/350 (68%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++++  ++KTE+PS KK+ DA  +GN PISREA LF++ LA  IY +FF   G+ ++  
Sbjct: 1   MADDEDQESKTESPSEKKMRDAAEQGNLPISREAPLFATTLAFYIYFVFFMPQGVSTLYQ 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+    Q  +   + ++ L  HL  S + ++ P LLLFM+FG+     Q +P   L
Sbjct: 61  TLRDLMEKPDQWIIGTGTDVISLFVHLGWSMAAMLGPALLLFMLFGLTQSFAQHLPSFVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P  +R+SL  GI R++S+   V F KS  KII+V  I+ +S+   YF  LD + ++
Sbjct: 121 DRITPKMERLSLIGGIGRMFSVMGFVEFGKSLFKIIVVAIIMFVSMRGQYFGTLDAMLSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       V+++LI++L     LTV+D+GW  + WY KL+M++QE+KDE KQS G+P
Sbjct: 181 PQIIFVKLSDIVQEMLIIVLFATGLLTVMDLGWQRYNWYQKLRMTRQEVKDEHKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQ+S  R + R +MM    RAT+IITNPTH+A+ALRY++TE +AP+++AKGQ+LIA
Sbjct: 241 VVKARQRSAQRDQARRRMMNNVPRATMIITNPTHFAVALRYVRTEMEAPIVLAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA E+NIPIFE+P LARS+F QV ++S IPP+FYKAVA+++ ++Y
Sbjct: 301 LKIREIAEENNIPIFEDPPLARSMFAQVSVDSVIPPIFYKAVAEIVQRLY 350


>gi|190574224|ref|YP_001972069.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia
           K279a]
 gi|190012146|emb|CAQ45769.1| putative flagellar biosynthetic protein FlhB [Stenotrophomonas
           maltophilia K279a]
          Length = 376

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSEN++   KTE P+ K++ DA  +GN P SRE    +   A ++ ++          ++
Sbjct: 1   MSENESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L S  Q   ++   +      L L    ++ P +L+ ++    + L+      + 
Sbjct: 61  WMKHAL-SPEQGLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLVMGGLRWSQ 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+KR+Y    +  F KS +++  VG    + +   + T+   I   
Sbjct: 120 KALLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +        ++L+     +  L  +D  +    W  KLKM+++E++ E+K+S G+P
Sbjct: 180 LETAITDGLGFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + +     +MMEA   A +++ NPTHYA+AL+Y     +AP +VA G +  A
Sbjct: 240 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGTMNAPTVVALGVDETA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  + + I   P LAR+L+++  +   IP   Y AVAQ++  +Y  +
Sbjct: 300 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 352


>gi|254505032|ref|ZP_05117183.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
 gi|222441103|gb|EEE47782.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
          Length = 358

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/353 (35%), Positives = 208/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    D+KTE P+ KKI+DA+ +GN P+S+EA + + ++  L+   F  + G+  + S
Sbjct: 1   MSEEADKDSKTEEPTEKKIQDAIEKGNTPVSKEAPVLAMLIGALLIGGFAITSGVRQLVS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+  LL  +    L + +  + L   LS+     + P + +  + G+ S  +Q  P +  
Sbjct: 61  DMAHLLDVSGGLDLGNSADALMLSHSLSIKVGLFLAPIIAILSVSGLASAFLQNKPSIVP 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N +KP   ++SL++G  RI+     V F+K+  K   V  I+      +   +++ +  +
Sbjct: 121 NRIKPELSKLSLKKGWSRIFGAQGFVEFLKAVFKFSTVSAIVYAQFRAHESDLINAMFTD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++         +++  + +    L  +DI WS   W   L+M+KQE+KDE KQ  G+P
Sbjct: 181 PSALPEMILQISLRLISGVCIVTILLVTVDILWSRSHWRKNLRMTKQEVKDEHKQMEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K RQ+S+AR R R++MM A  +AT+++ NPTH+A+ALRY   +N APV+VAKGQ+LIA
Sbjct: 241 IVKARQRSLARDRARNRMMSAVPQATLVVANPTHFAVALRYDGEKNPAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  ++IP+ E+  LARSL+    +   IPP FY+AVA++I  +Y +K
Sbjct: 301 LKIREIAETNDIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICFVYSRK 353


>gi|291484192|dbj|BAI85267.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp. natto
           BEST195]
          Length = 360

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   + L+         + S +     
Sbjct: 12  GEKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   KL + S++  L   L      ++ P LL+ ++ G+ S  +Q   + +   ++P  
Sbjct: 72  ESLTMKLSE-SNVHTLFVSLLKDMGIILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRIYS+  +V  +KS +KI++VG      L  +Y  +L      P   L  
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|291617775|ref|YP_003520517.1| FlhB [Pantoea ananatis LMG 20103]
 gi|291152805|gb|ADD77389.1| FlhB [Pantoea ananatis LMG 20103]
          Length = 397

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/350 (28%), Positives = 187/350 (53%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + KTE+P++ ++E A  EG  P SRE +    +LA ++ L    +   + + + + 
Sbjct: 17  ENSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLLAGIMILWVGGAMMAHRLAAMVS 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + D   I+  + +L + A   ++P L   ++  I S ++    V++   +
Sbjct: 77  TGLR-FDHAMVTDDKIIIAHVGNLIMQAIAALLPLLGGLVLVAIASPMLLGGVVISGKSI 135

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K  F +++   G+KR+++        K  +K ILVG +    +  ++  ML  I+ +P +
Sbjct: 136 KVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVGCVAGWYVWSHWPDMLRLIAESPTT 195

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L H    +     +++L +  +   D+ W  +  + KL+MS+QEI+DE KQ  G+P +K
Sbjct: 196 ALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHFKKLRMSRQEIRDEHKQQEGDPHVK 255

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP ++AKG   IA ++
Sbjct: 256 GRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYNEKKMSAPKVIAKGAGDIALRI 315

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 316 RELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALYGAVAEVLAWVWQLR 365


>gi|299534768|ref|ZP_07048098.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1]
 gi|298729856|gb|EFI70401.1| flagellar biosynthesis protein FlhB [Lysinibacillus fusiformis ZC1]
          Length = 362

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/346 (30%), Positives = 183/346 (52%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +DA  +G    S++ S    +L   I+L FF       + +       
Sbjct: 14  GEKTEKATPKKRQDARKKGQVVKSQDISSAIVMLMVFIFLFFFAGSLRDELLAFFRQTFI 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
              + +   I  ++ L T   +  + +++P + +  +  +    +Q   +  L  +K   
Sbjct: 74  HNIRIESLTIDSVMHLFTETLIQMAFIIVPIMAIAFVGALAGNFMQFGFLFTLEPMKFDL 133

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K++   +G+K+I+S+  +V  +KS +KI  +G++ TI +  N   +L     +P   L  
Sbjct: 134 KKMDPIKGLKKIFSVKAIVELIKSVLKIGFIGSVTTIIIWSNLPEVLALSFKSPWMTLIT 193

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  + I   L +  ++VLD  +  H++   LKMSKQ+IKDE K S G+P+IK++ K
Sbjct: 194 VGKLVGIMGIAASLVLLCVSVLDWMYQKHEYEKNLKMSKQDIKDEYKNSEGDPLIKSKIK 253

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM     A ++ITNPTHYA+AL+Y +   DAP ++AKG + IA+K++ IA
Sbjct: 254 QRQREMAMRRMMSEVPSADVVITNPTHYAIALKYNEDSMDAPRVIAKGTDFIAQKIKLIA 313

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++ + E   LAR+++ QV I   +P  F+KAVA+++  +Y  K
Sbjct: 314 KEHDVIMVENRPLARAMYDQVEIGDQVPEEFFKAVAEILAYVYRIK 359


>gi|119476304|ref|ZP_01616655.1| Flagellar biosynthesis pathway, component FlhB [marine gamma
           proteobacterium HTCC2143]
 gi|119450168|gb|EAW31403.1| Flagellar biosynthesis pathway, component FlhB [marine gamma
           proteobacterium HTCC2143]
          Length = 386

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 179/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END    KTE  + K++E +  EG    S+E      +LA +  L+ +      ++  
Sbjct: 1   MAENDNGQEKTEEATPKRLEKSREEGQVARSKELGTALILLAGVGGLIVYGGDFGQALMG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S  +    D S ++  L + S+     ++P   L  +  +   +     +L+ 
Sbjct: 61  VMR-FNFSMPRDVAFDESLMLRHLGNTSIFIIETMLPFFALIAVAAVVGPVALGGFILSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+   +GIKRI+S+ +LV  +KS  K+++VG++   +L      +LD   A 
Sbjct: 120 KALVPKLTRLDPIKGIKRIFSLTSLVELLKSICKVLVVGSMAYFTLRNAEMDLLDLAHAE 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      V   ++ +   +  + ++D+ +       KLKM+ QE+KDE+K S G P
Sbjct: 180 LQPAIVQMLTIVAWSVLAVSASMILIVLIDVPFQIFDHSKKLKMTLQEVKDEMKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MMEA   A ++ITNP H+++AL+Y      AP+LVAKG + +A
Sbjct: 240 EVKGRIRQLQREMAQRRMMEAVPEADVVITNPEHFSIALKYDVEGGGAPILVAKGVDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  +++ I   P LAR+++    I+  IP   Y AVAQ++  ++  +
Sbjct: 300 IKIREIANANDVMILAAPPLARAIYFTTEIDDEIPNTLYLAVAQVLAYVFQLR 352


>gi|153939695|ref|YP_001391947.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum F str. Langeland]
 gi|152935591|gb|ABS41089.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
           str. Langeland]
 gi|295319965|gb|ADG00343.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum F
           str. 230613]
          Length = 609

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 261 ASEEKTEDATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 321 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 380 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 440 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 559 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 606


>gi|28869179|ref|NP_791798.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967544|ref|ZP_03395692.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato T1]
 gi|301382881|ref|ZP_07231299.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061091|ref|ZP_07252632.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tomato K40]
 gi|302131293|ref|ZP_07257283.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852419|gb|AAO55493.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927845|gb|EEB61392.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           tomato T1]
 gi|331016989|gb|EGH97045.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 378

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  EG    S+E +    +L     LL  F  GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLL-MFGAGIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL     + ++  + D S++   L    L A  +++P L+  +   +   ++    + + 
Sbjct: 60  DLMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L++    ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|266618907|ref|ZP_06111845.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
 gi|263528671|gb|EEZ28380.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum Bf]
          Length = 413

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 187/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + +K  DA  +G    S+E +L  ++LAC + L+     G   +   +   
Sbjct: 65  ASEEKTEEATPRKKMDARKKGQVAKSKELALAFTLLACTLVLVALGEYGANELKETMAGF 124

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L +    +L + +++  L     L   ++V+P  L  M FGI +  +Q   +     +KP
Sbjct: 125 LNNYLNMEL-NYNNLNSLAILTVLRVGKIVLPVALPIMCFGIAANYLQTGFLFTKEPLKP 183

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FK+++   G KR++S+  ++  +K    I +VG +    L +NY  +L+  +  P  ++
Sbjct: 184 DFKKLNPINGFKRMFSLRTVMELLKDLTIITVVGIVGYKFLQDNYLKILNLGTLRPWYMI 243

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + V D  +  +Q+   LKM+KQE+K+E KQ  G+P IK++
Sbjct: 244 TGLLSLAISIFFRITLIMLFIAVADYVYQKYQYNKDLKMTKQEVKEEYKQDEGDPQIKSK 303

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+ALRY + +  AP +VAKG + +A K++ 
Sbjct: 304 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALRYEKGDT-APKVVAKGADYVAIKIKD 362

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + +P+ E   LAR ++++V I+S +P   Y+AVA+++  +Y  K
Sbjct: 363 IAKNNEVPVIENKPLARLIYEKVEIDSEVPQDMYEAVAEILAIVYTLK 410


>gi|16078701|ref|NP_389520.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309516|ref|ZP_03591363.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313840|ref|ZP_03595645.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318763|ref|ZP_03600057.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323035|ref|ZP_03604329.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315405|ref|YP_004207692.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5]
 gi|7404374|sp|P35538|FLHB_BACSU RecName: Full=Flagellar biosynthetic protein flhB
 gi|2634010|emb|CAB13511.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|320021679|gb|ADV96665.1| flagellar biosynthesis protein FlhB [Bacillus subtilis BSn5]
          Length = 360

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   + L+         + S +     
Sbjct: 12  GEKTEKATPKKRKDTRKKGQVAKSSDVNTAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   KL + S++  L   L      ++ P LL+ ++ G+ S  +Q   + +   ++P  
Sbjct: 72  ESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRIYS+  +V  +KS +KI++VG      L  +Y  +L      P   L  
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|126441654|ref|YP_001060838.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668]
 gi|126221147|gb|ABN84653.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 668]
          Length = 401

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D + ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALATPMAMGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|71736663|ref|YP_275525.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484900|ref|ZP_05638941.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289651607|ref|ZP_06482950.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487818|ref|ZP_07005858.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557216|gb|AAZ36427.1| flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157543|gb|EFH98623.1| Flagellar biosynthesis protein flhB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330889044|gb|EGH21705.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986505|gb|EGH84608.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011080|gb|EGH91136.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 378

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|188991600|ref|YP_001903610.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733360|emb|CAP51561.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 376

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    S
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGTGVFALMLMARGIGDGAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   ++ +++    +   ++  
Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L   D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA   A +++ NPTHYA+AL+Y   +  APV+VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|126454601|ref|YP_001068145.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           1106a]
 gi|134281603|ref|ZP_01768311.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305]
 gi|167920930|ref|ZP_02508021.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           BCC215]
 gi|217423909|ref|ZP_03455409.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576]
 gi|226193093|ref|ZP_03788703.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814235|ref|YP_002898686.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           MSHR346]
 gi|242317683|ref|ZP_04816699.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1106b]
 gi|254183876|ref|ZP_04890467.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
 gi|254298802|ref|ZP_04966253.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
 gi|126228243|gb|ABN91783.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1106a]
 gi|134247270|gb|EBA47356.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 305]
 gi|157808470|gb|EDO85640.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
 gi|184214408|gb|EDU11451.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
 gi|217392972|gb|EEC32994.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei 576]
 gi|225934693|gb|EEH30670.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506461|gb|ACQ98779.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           MSHR346]
 gi|242140922|gb|EES27324.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1106b]
          Length = 401

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D + ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHAAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|292669764|ref|ZP_06603190.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541]
 gi|292648561|gb|EFF66533.1| flagellar biosynthetic protein FlhB [Selenomonas noxia ATCC 43541]
          Length = 374

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 177/348 (50%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     S+ +    +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLVGFFSLKLLWDSIYLSIATYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            ++  Q    D  +I+ +   + +  ++   P +L  M+ G+     Q     +   ++ 
Sbjct: 84  FSNLNQ--TVDTENIIRIFIGIIIVLAKTAFPIMLFIMVIGLAINFFQVGLNFSAESIEF 141

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G  RI+S   LV   KSF KII++G  +   + E    M  F+  +  + L
Sbjct: 142 KLDKLNPINGFGRIFSKRALVELAKSFFKIIVIGFFLYRFIHEQILAMPQFMFFDLTTSL 201

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++  +++  I  +   D G+   Q    LKM+KQE+KDE+KQ+ G+P IK +
Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMAFCDYGYQRWQTTQDLKMTKQEVKDEMKQTEGDPQIKGK 261

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +IITNPTHYA+AL Y Q    AP +VAKGQ+L+A+++++
Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHYAVALSYEQG-MVAPTVVAKGQDLVAQRIKE 320

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I  +  +PI E   LAR+L+  V +  A+P   Y+AVA+++  +Y  K
Sbjct: 321 IGRDARVPIIENKPLARTLYAAVQVGDAVPHELYQAVAEVLAYVYRLK 368


>gi|15964403|ref|NP_384756.1| flagellar biosynthesis protein FlhB [Sinorhizobium meliloti 1021]
 gi|307311545|ref|ZP_07591186.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C]
 gi|307318900|ref|ZP_07598331.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83]
 gi|17380369|sp|O54243|FLHB_RHIME RecName: Full=Flagellar biosynthetic protein flhB
 gi|15073580|emb|CAC45222.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306895314|gb|EFN26069.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti AK83]
 gi|306899562|gb|EFN30191.1| flagellar biosynthetic protein FlhB [Sinorhizobium meliloti BL225C]
          Length = 360

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/350 (44%), Positives = 243/350 (69%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D+KTEAPS KKI DA  +GN P SRE + F+S LA  I+++FF S G  ++  
Sbjct: 1   MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +L+  +  V L++H+ L  + LV+P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVFILLILFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G KRIY +  LV F KS  KII+V  ++ + L  +YF  LD + ++
Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       +++++I++L   ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P
Sbjct: 181 PVTIFTTMISDLKQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|197285519|ref|YP_002151391.1| flagellar biosynthesis protein FlhB [Proteus mirabilis HI4320]
 gi|227356013|ref|ZP_03840404.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
 gi|194683006|emb|CAR43467.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
 gi|227163790|gb|EEI48698.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
          Length = 382

 Score =  367 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 174/353 (49%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  +G    S+E S    IL   + LL+     I     
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKELSSVLMILGG-VSLLWMSGRFITRELY 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +     + + + ++     L   A   + P  L  ++  IG   +      + 
Sbjct: 59  AMLTEGFTFNHHIIGNENLLIPRFASLMKQAVFALSPVFLGLVLVAIGGSAVLGGINFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+ +   G+KRI+S+N L    K+ +K + VG   T+ L  N+  +L  I+  
Sbjct: 119 KSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSLFVGLAATVFLWHNWNDILHLITLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P S L +A   +   + + +  +  +   DI +       KL+M++QEIKDE KQ  G+P
Sbjct: 179 PLSALANAMQLLIFAVYIAVFMLIPMVAFDIIFQIRSHLKKLRMTRQEIKDEFKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +       R +MM    +A +I+TNPTHYA+AL+Y   +  AP ++AKG   IA
Sbjct: 239 QLKARIRQQQHEMSRRRMMADVPKADVIVTNPTHYAVALQYN-DKMVAPKVLAKGAGAIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++I  EH IP+ E P LAR+L++   I  AIP   Y AVA+++  +Y  +
Sbjct: 298 LKIKEIGAEHRIPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLR 350


>gi|330876032|gb|EGH10181.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 378

 Score =  367 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  EG    S+E +    +L     LL  F  GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLL-MFGTGIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  + D S++   L    L A  +++P L+  +   +   ++    + + 
Sbjct: 60  ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L++    ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|395390|emb|CAA52218.1| flagellar biosynthetic protein [Bacillus subtilis]
          Length = 360

 Score =  367 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   + L+         + S +     
Sbjct: 12  GEKTEKATPKKRKDTRKKGQVAKSSDVNSAVSLLVIFLSLIAIGPYMRDRLLSFIETFYT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   KL + S++  L   L      ++ P LL+ ++ G+ S  +Q   + +   ++P  
Sbjct: 72  ESLTMKLSE-SNVHTLFVSLLKDMGMILAPILLVALVAGVVSNYMQVGFLFSAEVIQPKL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRIYS+  +V  +KS +KI++VG      L  +Y  +L      P   L  
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKIVVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLILAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|308273532|emb|CBX30134.1| Flagellar biosynthetic protein flhB [uncultured Desulfobacterium
           sp.]
          Length = 356

 Score =  367 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 192/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +A   KTE P+ KK ED   +G    S+E S    + + L  +  + S  +  V  
Sbjct: 1   MAE-EASGEKTEKPTPKKREDIRKKGEVAKSKELSSVVVLFSGLFAMGIYGSFMLSKVQE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LL++ T   L  I  ++    HL +S   ++ P L       + S + Q   +++ 
Sbjct: 60  ITKSLLSNPTITDL-TIHGVMEFSRHLIISFVVILAPLLAAVFAGAVLSNIAQVGFMVSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F +++  +G+KR+ S+ +++   KS VK+I+VG    +++T     +       
Sbjct: 119 ELIKPKFSKLNPFKGLKRLVSMQSVMELFKSMVKLIIVGATAYLTITHEMDNVSMLGELE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             SI ++ F T   + +   + +  L V+D  +   ++  ++KMSKQEIKDE K++ G+P
Sbjct: 179 LVSIFHYIFATFYNIFLKCSIAMLVLVVIDYAYQRWEFEKRIKMSKQEIKDEYKKTEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+R ++I     R +MM+   +A +IITNPTH+A+A++Y   E +AP ++AKG   IA
Sbjct: 239 QVKSRIRAIQMEMARKRMMQDVPKADVIITNPTHFAVAIKYNGLEMNAPKVIAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ +A +HNIP+ E   LAR+L+K V I   IP   Y+AVA ++  IY  K
Sbjct: 299 ARIKSLAADHNIPVVENKELARNLYKLVEIGREIPADLYQAVAGVLAYIYKLK 351


>gi|289629017|ref|ZP_06461971.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866461|gb|EGH01170.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 378

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLLVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|212709483|ref|ZP_03317611.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM
           30120]
 gi|212687821|gb|EEB47349.1| hypothetical protein PROVALCAL_00525 [Providencia alcalifaciens DSM
           30120]
          Length = 383

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ ++   KTE P+  K + A ++G    S+E S    +LA  + LL+     + +   
Sbjct: 1   MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAG-VSLLWLSGGHLATQLR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +           L++   ++  L  +   A   ++P +    + GI +  +    + N 
Sbjct: 59  QIMRQGFIFDGHYLQNTGLMLSYLGRVVSEALFALLPIIGGLALVGISASSLVGGLLFNS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+++  +G+KRI+S+N L    K+ +K + VG   +I L +++ ++L  +   
Sbjct: 119 KLIKFDLKKLNPIKGLKRIFSMNALSELFKAILKCVFVGLGASIFLWQSWPSLLHLVMEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L +A   V     +I+  +  +   D+ + +     KL+MS+QEIKDE KQ  G+P
Sbjct: 179 PTTALANALEKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R+  R++MM     A +I+TNPTHYA+AL+Y   +  AP ++AKG  +IA
Sbjct: 239 HIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++I  EH I   E P LAR+L++   I  +IP   Y AVA+++  +Y  +
Sbjct: 299 QRIKEIGAEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351


>gi|308068671|ref|YP_003870276.1| flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681]
 gi|305857950|gb|ADM69738.1| Flagellar biosynthetic protein flhB [Paenibacillus polymyxa E681]
          Length = 370

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 175/347 (50%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK +DA  +G    S E      +L     L+ F              + 
Sbjct: 21  SGEKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIF 80

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +    ++   +  + ++    +    ++ P  +  ++ GI +  +Q   +L    + P 
Sbjct: 81  VNRLSMEV-TPNTTMLMMGEYGVQILIMLAPIFIGAIVIGIVANYMQIGFLLTGEGITPK 139

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F ++   +G K I+S+ +LV F+KS +K+ ++G ++   L +    +      +   +L 
Sbjct: 140 FSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKTDLPKLAEMSGDQMLS 199

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  ++ + I + +  L VLD  +  ++    LKMSKQ+IKDE K+  G+P+IK + 
Sbjct: 200 FTASLTMELGLKIGVVLFVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKI 259

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+    A +IITNPTH+A+AL+Y  +E +AP ++AKGQ+ +A ++++I
Sbjct: 260 RERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALRIKEI 319

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++ +   E   LAR+LF++  I  AIP   ++AVA+++  +Y  K
Sbjct: 320 AKQNGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366


>gi|27365293|ref|NP_760821.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus CMCP6]
 gi|320155677|ref|YP_004188056.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O]
 gi|27361440|gb|AAO10348.1| flagellar biosynthetic protein FlhB [Vibrio vulnificus CMCP6]
 gi|319930989|gb|ADV85853.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus MO6-24/O]
          Length = 376

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++  
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D S +  + +    +    ++  L    +              ++
Sbjct: 60  AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGISFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 EAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALVTGVAIYLIQASQEDLIQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A +I+TNP H+++ALRY Q  + APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPVVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351


>gi|254258153|ref|ZP_04949207.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1710a]
 gi|254216842|gb|EET06226.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1710a]
          Length = 401

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D + ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHTAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+EIK E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351


>gi|268589991|ref|ZP_06124212.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131]
 gi|291314710|gb|EFE55163.1| flagellar biosynthetic protein FlhB [Providencia rettgeri DSM 1131]
          Length = 383

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ ++   KTE P+  K + A ++G    S+E S    +LA  + LL+     + +   
Sbjct: 1   MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAG-VSLLWLSGGHLAAQLR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +           L++   ++  L  +   A   ++P +    + GI +  +    V N 
Sbjct: 59  QITRQGFIFDGHYLQNTGLMISYLGRVVSEALFALLPVIGGLALVGISASSLVGGLVFNS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+++  +G+KRI+S+N L    K+ +K + VG    I L +++ ++L  +  +
Sbjct: 119 KLIKFDLKKLNPIKGLKRIFSMNALSELFKAVLKSLFVGLGAFIFLWQSWPSLLHLVMES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L +A   V     +I+  +  +   D+ + +     KL+MS+QEIKDE KQ  G+P
Sbjct: 179 PVTALSNALQKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R+  R++MM     A +I+TNPTHYA+AL+Y   +  AP ++AKG  ++A
Sbjct: 239 QIKAKIRQQQRAIARNRMMADVPNADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++I  EH I   E P LAR+L++   I  +IP   Y AVA+++  +Y  +
Sbjct: 299 QRIKEIGEEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351


>gi|194365643|ref|YP_002028253.1| flagellar biosynthesis protein FlhB [Stenotrophomonas maltophilia
           R551-3]
 gi|194348447|gb|ACF51570.1| flagellar biosynthetic protein FlhB [Stenotrophomonas maltophilia
           R551-3]
          Length = 376

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+++   KTE P+ K++ DA  +GN P SRE    +   A ++ ++          ++
Sbjct: 1   MSEDESAGEKTEQPTEKRLRDAREQGNLPRSRELGTAAVFGAGVLAVMAMSGSIGRGASA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L S  Q   ++   +      L L    ++ P +L+ ++    + L+      + 
Sbjct: 61  WMKHAL-SPEQSLRQNPKELFGHFGDLLLQFMLVIAPLVLVCLLASFVAPLLMGGLRWSQ 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+KR+Y    +  F KS +++  VG    + +   + T+   I   
Sbjct: 120 KAMLPDINRMNPMSGLKRLYGPEAIAEFTKSLLRVAFVGVAAGLVVWTGFDTLRGLIHHP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +        ++L+     +  L  +D  +    W  KLKM+++E++ E+K+S G+P
Sbjct: 180 LETAITDGLSFTLRLLLATAGAMLVLAAIDAPYQRWNWMRKLKMTREELRREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + +     +MMEA   A +++ NPTHYA+AL+Y     +AP +VA G +  A
Sbjct: 240 EVKGRIRQLQQQMANRRMMEAVPTADVVVVNPTHYAVALKYEGGAMNAPKVVALGVDETA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  + + I   P LAR+L+++  +   IP   Y AVAQ++  +Y  +
Sbjct: 300 LRIREVADGNKVAIVSAPPLARALYREGQLGKEIPVRLYSAVAQVLSYVYQLR 352


>gi|310767884|gb|ADP12834.1| Flagellar biosynthesis protein FlhB [Erwinia sp. Ejp617]
          Length = 383

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 188/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+ + KTE+P++ ++E A  EG  P SRE +    ++  L  L          + +
Sbjct: 1   MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLMTGLSILWVGGEWMGRKMGA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D S ++ L+ ++ L A   V+P +   ++  I + ++    VL+ 
Sbjct: 60  LLADGLV-FNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ +++S  +    +K+ +K  LVG +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSAQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPIVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++   + IP+ E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQLR 351


>gi|307264886|ref|ZP_07546448.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920144|gb|EFN50356.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 363

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 107/348 (30%), Positives = 186/348 (53%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + + +  LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|163856421|ref|YP_001630719.1| flagellar biosynthesis protein FlhB [Bordetella petrii DSM 12804]
 gi|163260149|emb|CAP42450.1| flagellar biosynthesis protein FlhB [Bordetella petrii]
          Length = 379

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 182/353 (51%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++   KTEA S +++E A  EG    SRE   F  + A +  L    S     +T 
Sbjct: 1   MAD-ESDLEKTEAASPRRLEKAREEGQIARSRELGTFLLLAAGVGGLWLSGSMLYRGLTG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +    D   +V      +  A  LV+P   + M   + + ++    V + 
Sbjct: 60  VLRNGLGFDARIGR-DPGIMVAQAVDGAGQALLLVLPIFGVLMAVAVLASVVLGGFVFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F ++SL  G+KR+ S   +V  +K+  K +LVG +    +  +   ML  + A 
Sbjct: 119 KPLQPDFAKLSLFSGLKRMVSAQTVVELLKAVAKALLVGGVAVAVIGGHRDEMLALMHAA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   V     +I+  +  + +LD+ W       KL+MSK++++ E K+S G+P
Sbjct: 179 PTEALVKALTLVALCAALIVASLGIIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   RS  R +MM    RA +++TNPTHYA+ALRY + +  AP +VAKG  L+A
Sbjct: 239 HIKARIRQQQRSMARRRMMSEVPRADVVVTNPTHYAVALRYAEGQA-APRVVAKGTGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  H +P+ + P LAR+L++ V +   IP   Y AVA+++  ++  +
Sbjct: 298 ARIRELAAGHRVPLLQAPPLARALYQHVELGQEIPAALYTAVAEVLAWVFQLR 350


>gi|167620815|ref|ZP_02389446.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           Bt4]
          Length = 401

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D + ++     LSL     ++P L L  +  + + +     +++ 
Sbjct: 60  MLHTAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351


>gi|163794129|ref|ZP_02188102.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199]
 gi|159180743|gb|EDP65262.1| flagellar biosynthesis protein B [alpha proteobacterium BAL199]
          Length = 358

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 198/353 (56%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++     KTE P+ KK+ DA  +G    S+E + F+S+LA    +          + S
Sbjct: 1   MSDSQDDSQKTEEPTGKKLGDARKKGQIAQSKEVTNFASLLALTFAVTILAPYMAIQLYS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + V++  A   ++ D      +L  L +     + P L   M+ G+ + L Q   +   
Sbjct: 61  SMAVVIEHAAVARI-DAGSTSEILMGLVIDTFLALAPTLGTVMVLGVAATLGQSGILFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P  +++S   G KR++S+ ++V F+K  +K+ +V  I  + ++       + ++ +
Sbjct: 120 DPIMPKLEKLSPLAGFKRLFSLKSIVEFIKGIIKLAIVAFIAYVLMSPELDRAEELLTMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L      V ++++ +L F+A + + D  +  ++ Y +L+MS+Q+I+DE KQ+ G+P
Sbjct: 180 LIEVLKEIQTLVIRLMMGVLAFMAVVAIADYIYQRYEHYKQLRMSRQDIRDEHKQAEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I   R R +MM A  +A ++ITNPTH+A+AL+Y  +   APV+VAKG + +A
Sbjct: 240 QIKARLRQIRADRARRRMMAAVPKADVVITNPTHFAVALQYDTSAMAAPVVVAKGSDAVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH +PI E P LAR+LF  V I+  IP  +YKAVAQ+I  +Y  K
Sbjct: 300 FRIREVAKEHKVPIVENPPLARALFASVEIDEQIPETYYKAVAQVISYVYRLK 352


>gi|21231358|ref|NP_637275.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768589|ref|YP_243351.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113019|gb|AAM41199.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573921|gb|AAY49331.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 376

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    S
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGTGVFALMLMARGIGDGAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLVGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   ++ +++    +   ++  
Sbjct: 120 KAIMPDLNKLNPMNGIKRMWGSNSLAELVKSILRLLFVGLAASLCISKGLHGLRSLVNRP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L   D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAFDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA   A +++ NPTHYA+AL+Y   +  APV+VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEALPTADVVLMNPTHYAVALKYEGGKMRAPVVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREACEQHRVAIVTAPPLARALYREAQLGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|333004498|gb|EGK24027.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-272]
 gi|333017872|gb|EGK37178.1| flagellar biosynthetic protein FlhB [Shigella flexneri K-227]
          Length = 397

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 187/353 (52%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKRI+S       +K+ +K ILVG++    L  ++  M+  ++ +
Sbjct: 118 KSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAES 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P
Sbjct: 178 PITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R+  R +MM    +A +I+ NP HY++AL+Y + +  AP +VAKG  L+ 
Sbjct: 238 HVKGRICQMQRAAARRRMMADVPKADVIVNNPNHYSVALQYDENKMSAPKVVAKGAGLVV 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 298 LRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 350


>gi|37680652|ref|NP_935261.1| flagellar biosynthesis protein FlhB [Vibrio vulnificus YJ016]
 gi|37199401|dbj|BAC95232.1| flagellar biosynthesis pathway, component FlhB [Vibrio vulnificus
           YJ016]
          Length = 376

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++  
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLVIGAVSLMWFGESLARALFK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D S +  + +    +    ++  L    +              ++
Sbjct: 60  AMGRLF-SLSREEIFDPSKLFDIASGALSALLLPLLLILFALFVAAAIGSAGVGGISFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 EAATPKLSKMNPLSGIKRMFGLQSWVELIKSILKVALVTGVAIYLIQASQEDLIQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A +I+TNP H+++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPTADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDISIVPAPPLARALYYSTELEQQIPDGLFTAVAQILAYVFQLK 351


>gi|320529415|ref|ZP_08030503.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399]
 gi|320138381|gb|EFW30275.1| flagellar biosynthetic protein FlhB [Selenomonas artemidis F0399]
          Length = 374

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 104/348 (29%), Positives = 179/348 (51%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     ++ S    +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDSIYLAIASYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            A+  Q    D  +IV L   +    ++  +P +L  M+ G+     Q     N   ++ 
Sbjct: 84  FANLNQPV--DTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQVGLNFNTEAIEF 141

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G  RI+S  +LV   KSF KI+++G  +   + E    M  F+  +  + L
Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFMFFDLTTSL 201

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++  +++  I  + V D G+   Q    LKM+KQE+KDE+KQ+ G+P IK +
Sbjct: 202 ALVAEIIFQMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTEGDPQIKGK 261

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +IITNPTHYA+AL Y +    AP ++AKGQ+L+A+++++
Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAYEKG-MVAPTVLAKGQDLVAQRIKE 320

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +  E  +PI E   LAR+L+  V +  A+P   Y+AVA+++  +Y  K
Sbjct: 321 LGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368


>gi|315127306|ref|YP_004069309.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913]
 gi|315015820|gb|ADT69158.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 167/353 (47%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+ KK++DA  +G    S+E      ++   I LL +       +  
Sbjct: 1   MAE-DSGQEKTEEPTPKKVDDAKKKGQIARSKELGTMFVLIFSAISLLMYGPEIGKGLYR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +L S  + +  D + +  +   ++      +   +L+ ++       +      + 
Sbjct: 60  IMGRML-SLNRNETYDTTKMFAVWGEVADVLLFPMSMFVLIIVLAAFIGNTMLGGFNFSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S  +G  R++     +  +KS +K  LV       +   +  +L     +
Sbjct: 119 QAAAPKASKMSPMKGFTRMFGPQAAIELLKSLLKFGLVAAFAIFLINTFFDEILHLSIES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + HA   +  + + +   +  +  +D  +  +    +LKM+ QE+KDE K S G+P
Sbjct: 179 APGNIVHALEILAWMFLGMSCTLIIIAAIDAPFQSYSHNKQLKMTMQEVKDEYKNSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP+++AKG + +A
Sbjct: 239 QIKARIRQTQRQMSQKRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAKGVDELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++RKIA  + +PI E P+L R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MQIRKIALGNEVPIVESPTLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351


>gi|330720472|gb|EGG98776.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC2047]
          Length = 378

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 184/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D+   KTE  + K++EDA  +G+ P S+E +  + +L     LL F   GI +  S
Sbjct: 1   MAESDSGQEKTEEATPKRLEDAKKKGDIPRSKELNTTAILLGGTGALLAFGG-GISAGLS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++       ++  + D   ++  L      +   +IP  ++ M+  I   +     V++ 
Sbjct: 60  NMMSANFRFSRDDIFDPQVMLIHLGQSMAESMMALIPFFIVVMLAAIIGPIALGGWVMSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +R+S   GIKR+++   L+  +K+  K +LV T+  + L      +L     +
Sbjct: 120 KSLAPKGERISPLAGIKRMFAKQALMELLKTIAKFLLVATLSLVILDFMTNDILAIAKED 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H    V   ++ +   +  ++++D+ +       KLKM+ QE+KDE+K + G P
Sbjct: 180 TIPAMAHTLRIVGWSVLAMSCTMILISIIDVPFQISSHAKKLKMTMQEVKDEMKNTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+R + +     + +MM A   A ++ITNP HYA+AL+Y      AP+LVAKG + IA
Sbjct: 240 EVKSRIRQLQYDMAQGRMMSAVPEADVVITNPEHYAVALKYNSDNMGAPLLVAKGADHIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+ E P LAR++F    +   IP   Y AVAQ++  ++  +
Sbjct: 300 FKIREIAKAHDIPVLEAPPLARAVFYSTELEQEIPAGLYVAVAQVLAYVFQLQ 352


>gi|30250406|ref|NP_842476.1| flagellar biosynthesis protein FlhB [Nitrosomonas europaea ATCC
           19718]
 gi|30181201|emb|CAD86399.1| FlhB HrpN YscU SpaS Family [Nitrosomonas europaea ATCC 19718]
          Length = 376

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 186/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    +TE  S +++E A  EG    S+E + F+ ++A    L    S  I  +++
Sbjct: 1   MAD-DNDLERTEPASPRRLEKAREEGQVARSQELTTFTLLIAASSSLWVIGSIIIQKLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    Q    + + ++  L  L+L     + P L   ++  + + ++    + + 
Sbjct: 60  VLESGLR-MEQEVAFNPALLLPRLFQLALDGLLAIAPLLGWLVIIALVAPMLLSGWLFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  KR++   G+KRI+S   L+  +K+  K++++G +    +  +   +LD +   
Sbjct: 119 KALFPDLKRLNPVNGLKRIFSSRGLIELVKAIAKVMVIGGVAAGIIWSHKQDVLDLVGMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L      +    ++I+  +  + V+D+ +       +L+MS+++++ E K+  G+P
Sbjct: 179 LDTSLISMSRLIGLTFMLIVGAMLLIVVIDVPFQIWNHARQLRMSREDLRKEAKEDEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +++ R   R +MM    +A +++TNPTHYA+AL+Y      AP +VAKG  LIA
Sbjct: 239 QVKGRIRNMQRQIARRRMMAEVPKADVVVTNPTHYAVALKYQDRSMRAPKVVAKGTQLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH+IP+ E P LAR+L+  V +++ IP   Y AVA ++  I+  K
Sbjct: 299 ARIRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYIFQLK 351


>gi|313896030|ref|ZP_07829584.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975455|gb|EFR40916.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 374

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 104/348 (29%), Positives = 179/348 (51%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P++KK  DA  +G    S+E +    +L     L   +     ++ S    +
Sbjct: 24  AGGEKTEEPTAKKRADARKKGQVGRSQELNTAFVLLIGFFSLKLLWDSIYLAIASYTTYV 83

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            A+  Q    D  +IV L   +    ++  +P +L  M+ G+     Q     N   ++ 
Sbjct: 84  FANLNQPV--DTENIVRLFIGIMEILAKTALPIMLFIMLIGLAVNFFQVGLNFNTEAIEF 141

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G  RI+S  +LV   KSF KI+++G  +   + E    M  F+  +  + L
Sbjct: 142 KLDKLNPINGFGRIFSKRSLVELAKSFFKILVIGFFLYRFIHEQIIAMPQFMFFDLTTSL 201

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++  +++  I  + V D G+   Q    LKM+KQE+KDE+KQ+ G+P IK +
Sbjct: 202 ALVAEIIFRMAFIVIGVIMIMAVADYGYQNWQTTQDLKMTKQEVKDEMKQTEGDPQIKGK 261

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +IITNPTHYA+AL Y +    AP ++AKGQ+L+A+++++
Sbjct: 262 IRQKQRQMAMARMMKEVPKADVIITNPTHYAVALAYEKG-MVAPTVLAKGQDLVAQRIKE 320

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +  E  +PI E   LAR+L+  V +  A+P   Y+AVA+++  +Y  K
Sbjct: 321 LGREARVPIVENKPLARTLYAAVQVGDAVPQELYQAVAEVLAYVYRLK 368


>gi|197334476|ref|YP_002156665.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11]
 gi|197315966|gb|ACH65413.1| flagellar biosynthetic protein FlhB [Vibrio fischeri MJ11]
          Length = 376

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  +SK+++ A ++G    S+E +  S ++   + L++F      ++ S
Sbjct: 1   MAESD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAVALMWFGEDVARALFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S ++ ++ D + ++ ++    ++    V   L+   +  +           + 
Sbjct: 60  VMERFF-SISREEIYDTNKLLEIVGGALIALVFPVFLILITLFVAALAGAAGLGGISFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F +++   GIKR++ + + V  +KS +K+ LVG +    +  +   +       
Sbjct: 119 EAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQLSLDT 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPANIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A +++TNP HY++ALRY Q+++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVVAKGVDHVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNI I   P LAR+L+    +   IP   + AVAQ++  I+  K
Sbjct: 299 MKIREIAREHNIYILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQMK 351


>gi|259908202|ref|YP_002648558.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|224963824|emb|CAX55326.1| Flagellar biosynthesis protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|283478130|emb|CAY74046.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163]
          Length = 383

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+ + KTE+P++ ++E A  EG  P SRE +    ++  L  L          + +
Sbjct: 1   MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSLLMLMTGLSILWVGGEWMGRKMGA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D S ++ L+ ++ L A   V+P +   ++  I + ++    V++ 
Sbjct: 60  LLADGLV-FNHSVVSDTSQMLRLIANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ +++S+ +    +K+ +K  LVG +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDPGKMNPIKGLGKLFSVQSAAELLKAVLKATLVGVVCGLYIWHHWAGMLHLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PLTALAGAMNMIAMCCILVVLGLSPMVGFDVFYQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP +VAKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVVAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++   + IP+ E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 299 LRIRELGAANRIPVLEAPPLARALYRHSEIGQHIPGALYAAVAEVLAWVWQLR 351


>gi|331269330|ref|YP_004395822.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
           BKT015925]
 gi|329125880|gb|AEB75825.1| flagellar biosynthetic protein FlhB [Clostridium botulinum
           BKT015925]
          Length = 594

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 184/348 (52%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G  P S+E S    +L   I LL        S   D+   
Sbjct: 245 ASDDKTEEATPHKLSEARKKGQVPKSKEVSSAIILLTSTIILLTLGEYVANSFKKDIIEF 304

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +    +L ++S ++ ++  +      + +P ++  M+ GIG+ L+Q   + +   +KP
Sbjct: 305 FTNYLNIEL-NVSSLISIIVTILWRFMIVFLPVVVPLMVMGIGANLLQTGYINSKEPLKP 363

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G K+++S+  ++  +K    I ++G +    L  N+  +L   +     I+
Sbjct: 364 QLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFVGYGFLKSNFRKVLSMTTLRFPVII 423

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + L +  + + D  +   Q+   +KMSKQE+K+E KQ  G+P +K +
Sbjct: 424 TSFLKLTTNIFFRVSLVMIAIALTDFIYQKFQFKRDMKMSKQEVKEEFKQMEGDPQVKGK 483

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+    A+++ITNPTH A+AL+Y   E++AP+LVAKG + IA K+++
Sbjct: 484 IKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGEDNAPMLVAKGSDYIAIKIKQ 543

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+++PI E   LAR +FK+V I + IP   Y+AVA+++  +Y  K
Sbjct: 544 IAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLK 591


>gi|86146123|ref|ZP_01064449.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218708836|ref|YP_002416457.1| flagellar biosynthesis protein FlhB [Vibrio splendidus LGP32]
 gi|85836070|gb|EAQ54202.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218321855|emb|CAV17833.1| Flagellar biosynthetic protein flhB [Vibrio splendidus LGP32]
          Length = 376

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + K+++ A  +G    S+E +  S ++   I L++F      ++  
Sbjct: 1   MAESD-GQERTEDATPKRLQQAKEKGQVARSKELASASVLIVGAIALMWFGESMAKALFE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D + ++ +     ++    +   L+   +  +           ++
Sbjct: 60  TMQRLF-SLSREEVFDTTKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGINFSM 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMEV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQEIKDE K + G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEHKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q ++ APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPVVVAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREIARENDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351


>gi|213022149|ref|ZP_03336596.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 336

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 97/338 (28%), Positives = 180/338 (53%), Gaps = 2/338 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
            ++R+I  EH +P  E P LAR+L++   I   IP   
Sbjct: 299 LRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQL 336


>gi|77457779|ref|YP_347284.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf0-1]
 gi|77381782|gb|ABA73295.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens Pf0-1]
          Length = 379

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 175/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  + +LA    LL F       +  
Sbjct: 1   MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTLAIMLAGSAALLIFGGMLAQELMD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + ++  + D   +   L    L A   + P ++  ++      +     +   
Sbjct: 61  LMRQNF-TLSREVIMDERSMATFLMSSGLQALLAIQPIMITLLLAAFLGPIALGGWLFAA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S+  +V  +K+  K ++   +  + L  +   +L      
Sbjct: 120 GSLAPKFSRMNPAAGLKRMFSMKAVVELLKALAKFLITLGVALVVLNSDIDDLLRIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +  +D+     +   KLKM+KQE++DE K   G P
Sbjct: 180 LDRAIIHSLQLVGWSSLWLACGLIIIAAVDVPVQIWESIKKLKMTKQEVRDEHKDQEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A   A ++ITNPTHYA+AL+Y   +  AP+L+AKG + +A
Sbjct: 240 EVKQRIRQLQREMSQRRMMAAIPDADVVITNPTHYAVALKYDAEKGGAPMLLAKGSDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  +N+ + E P+LARS++    +   IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAVANNVMLLESPALARSIYYSTELEEEIPGGLYLAVAQVLAYVYQIR 352


>gi|163758003|ref|ZP_02165091.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43]
 gi|162284292|gb|EDQ34575.1| flagellar biosynthesis protein B [Hoeflea phototrophica DFL-43]
          Length = 363

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/353 (43%), Positives = 233/353 (66%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +  D+KTE P+ KK+ DA+++GN P SRE  +F+SIL  L++L+FF        T+
Sbjct: 1   MAEGEDKDSKTEEPTEKKLRDAIDKGNIPFSREVPIFASILGTLLFLVFFLPSAASRFTN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L   +   +LE     V L   L + A  +++P   L M FGI + ++Q +P   L
Sbjct: 61  SLRDLFEQSDDWRLETGGDAVALFQSLFIEAGVVMVPAFALLMGFGIAASVLQNMPSPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P  +R+S+ +G  RIY I  +V F KS  KII V   ++I++ + +F  LDF+  +
Sbjct: 121 DRIQPKLERISIVKGFGRIYGIKGMVEFAKSMFKIIAVSLFVSIAMKDEFFRSLDFMFMD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  ++        KV+ ++L+  A L VLD+ W+ + W++  KMSKQ+IKDE+KQS G+P
Sbjct: 181 PTLVVPDMARIAAKVVAVVLISTALLAVLDVLWTRYSWHNDQKMSKQDIKDELKQSDGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K RQ+S+AR R R +M+    RAT++I NPTH+A+ALRY++ E  APV++AKGQ+LIA
Sbjct: 241 IVKARQRSLARDRARRRMIAEVPRATMVIANPTHFAVALRYVREEGGAPVVIAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  H IP+FE+P LARS+F QV +++ IP VFYKAVA+L+++IY  K
Sbjct: 301 LKIREVAEAHGIPVFEDPPLARSMFAQVSVDNFIPAVFYKAVAELVHRIYTDK 353


>gi|288958052|ref|YP_003448393.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288910360|dbj|BAI71849.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 358

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 194/353 (54%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+    +KTE P+ KK+++A  +G   ++REA+ +  + A L+ L+      +  +  
Sbjct: 1   MSEDADESSKTEDPTGKKLDEAHRQGQFAMTREAANWLMVAAMLVVLVSVLPGTMKGLVF 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L+    +  Q   +       L   +      L +P LL F++ G+ + + Q    ++ 
Sbjct: 61  RLNYYFENLDQFTFDRAGVGALLFRVMRDVMWALWLPILL-FVVAGVMATIGQTGFHVSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+  ++  N  V  +KS VK+ +VG +  ++L   +  +  +I  +
Sbjct: 120 QLIEPKFSKLNPLPGLMNMFKANQAVELLKSIVKLAVVGGVAYMALRPMFGGIETYIGID 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L        ++LI +L+ +  +   D  W   Q+  ++KM+KQE+KDE KQ  G+P
Sbjct: 180 LITMLSQMDGLAHRLLIWVLVVLTFIAAGDFLWQKKQFDKQMKMTKQEVKDEHKQQEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R + I   R R +MM A   A +++TNPTH+A+AL+Y  ++  AP+++AKG + +A
Sbjct: 240 VVKGRIRQIRFERARKRMMAAVPDADVVVTNPTHFAVALKYDPSQMGAPLVLAKGVDQVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  +N+P+ E P LAR+L+    I+  +P   Y+AVA++I  ++  K
Sbjct: 300 FKIREIAESNNVPVIENPPLARALYAACDIDEEVPSEHYRAVAEVITYVFKLK 352


>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074126|gb|ADJ63525.1| flagellar biosynthesis FlhB transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 391

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TE  + K+IE A  +G+ P SRE +    +L     +  F  P + S+  
Sbjct: 1   MAE-DSDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSL-D 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + V + S  +  + D   ++ L++   L  +  VIP   L  +  + + L     + N+
Sbjct: 59  RIMVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P F +++   G   ++S+N+LV   K+ +K +LVGT+  +++      ++     +
Sbjct: 119 SSLAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGVES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +   HA   +    I ++  +  + VLD+ +    +  KL+M+++E+K E K+S G+P
Sbjct: 179 LKTAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +++ R+  R +MM     A +++TNPTHYA+AL+Y + +  AP +VAKG + IA
Sbjct: 239 HIKGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVAKGSDEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH +P+ E P LAR+L     I   IP   Y AVA+++  ++  +
Sbjct: 299 AKIRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLR 351


>gi|254228444|ref|ZP_04921870.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262393601|ref|YP_003285455.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
 gi|151939032|gb|EDN57864.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262337195|gb|ACY50990.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
          Length = 376

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      S+ S
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L     + ++ D + +  +           +   L       +           + 
Sbjct: 60  IMSRLF-DLQREEIFDTAKLFDIALGAMTDLLFPLFLVLATLFTAAMIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K++LV  +    +  +   ++      
Sbjct: 119 QAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAIYLIQASQADLIQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|311105926|ref|YP_003978779.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8]
 gi|310760615|gb|ADP16064.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans A8]
          Length = 384

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTEA S +++E A  EG    SRE   F  + A +  +    S    ++T 
Sbjct: 1   MAE-ESDLEKTEAASPRRLEKAREEGQIARSRELGTFMMLAAGVGAIWAGGSSLYRTLTG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    QR + D   +V         A  +++P   L  +  + S ++    V++ 
Sbjct: 60  VLRNGLG-FDQRIVADPGVMVERAVEGFGQALLVLLPIFGLLAVIAVLSSVLLGGLVISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++ +F ++S   G+KR++S   +V  +K+  K +LVG +    +   +  ML  +   
Sbjct: 119 KPLQFNFSKLSPISGVKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLSLMHVA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   V      I+  +  + +LD+ W       KL+MSK++++ E K+S G+P
Sbjct: 179 PSAALVKALTLVAMCCAFIVASLIVIVMLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R   R +MM    +A +++TNPTHYA+AL+Y + ++ AP ++AKG  LIA
Sbjct: 239 HVKARIRQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYDEEKSGAPRVLAKGTGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A E+ IP  E P LAR+L + V I   IP   Y AVA+++  ++  +
Sbjct: 299 AKIRELAAENRIPTLEAPPLARALHQHVEIGQEIPAELYTAVAEVLAWVFQLR 351


>gi|28899010|ref|NP_798615.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836930|ref|ZP_01989597.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|260365244|ref|ZP_05777801.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|260878794|ref|ZP_05891149.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|260897389|ref|ZP_05905885.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|260899948|ref|ZP_05908343.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|4322010|gb|AAD15913.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus]
 gi|28807229|dbj|BAC60499.1| polar flagellar assembly protein FlhB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749703|gb|EDM60448.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|308088249|gb|EFO37944.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|308094200|gb|EFO43895.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|308107420|gb|EFO44960.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|308115443|gb|EFO52983.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|328474453|gb|EGF45258.1| flagellar biosynthesis protein FlhB [Vibrio parahaemolyticus 10329]
          Length = 376

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      S+ S
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L     + ++ D + +  +           +   L+   +              + 
Sbjct: 60  IMSRLF-DLKRDEIFDTTKLFDIALGAMTDLLFPLFLILITLFVAATIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K++LV  +    +  +   ++      
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAMYLIQASQADLIQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP HY++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRAPVVIAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|2916784|emb|CAA11951.1| flhB protein [Sinorhizobium meliloti]
          Length = 360

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 156/350 (44%), Positives = 243/350 (69%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D+KTEAPS KKI DA  +GN P SRE + F+S LA  I+++FF S G  ++  
Sbjct: 1   MAEEQDKDSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +L+  +  V L++H+ L  + LV+P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLDTATDAVALISHVVLKCAALVLPVSILLILFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G KRIY +  LV F KS  KII+V  ++ + L  +YF  LD + ++
Sbjct: 121 DRIQPKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       +++++I++L   ATL ++D+ W+ H WY++L+M++QE+KDE+KQS G+P
Sbjct: 181 PVTIFTTMISDLQQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|226313051|ref|YP_002772945.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC
           100599]
 gi|226095999|dbj|BAH44441.1| flagellar biosynthetic protein FlhB [Brevibacillus brevis NBRC
           100599]
          Length = 365

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 101/346 (29%), Positives = 180/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +DA  +G    S++ S   S+ A    L+   S  + +    +   L 
Sbjct: 17  GEKTEKATPKKKQDARKKGQVAKSQDLSPALSLTAFFFLLMMLGSTMLGTFQDLMRESLI 76

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           + T  +L +  ++  ++  L   A ++V P L L  +       +Q     +   ++   
Sbjct: 77  TYTTWQLNE-ENLKVMVMQLVFEAIKIVGPILGLSFLVAFAVNYMQVGWHFSTEPLQMKL 135

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRI+S+ +LV  +KS +KI     +  + L      ++     +  ++L  
Sbjct: 136 EKIDPIKGAKRIFSLRSLVELLKSLLKISAGIYVAYVILWNAKEQVVQLSLLSLGAVLSF 195

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V K+ I + L +  L VLD  +  ++    L+MSKQ++KDE KQ+ G+P+IK + +
Sbjct: 196 TAEEVTKLGIYLGLLLFILAVLDYAYQRYEHEKNLRMSKQDLKDEHKQAEGDPLIKGKIR 255

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              RS    +MM+   +A +IITNPTH+A+A+RY  +   AP ++AKGQ+ +A K+R++A
Sbjct: 256 ERQRSMAIRRMMQELPKADVIITNPTHFAVAVRYDASAMSAPTVIAKGQDYLALKIREVA 315

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +H I   E   LAR+L+ QV +   IP   +KAVA+++  +Y  +
Sbjct: 316 KKHRIVTMENKPLARALYSQVEVGQQIPEEMFKAVAEVLAYVYKLQ 361


>gi|91223558|ref|ZP_01258823.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01]
 gi|269965690|ref|ZP_06179803.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B]
 gi|91191644|gb|EAS77908.1| flagellar biosynthesis protein B [Vibrio alginolyticus 12G01]
 gi|269829758|gb|EEZ83994.1| Flagellar biosynthetic protein flhB [Vibrio alginolyticus 40B]
          Length = 376

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 173/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      S+ S
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAISLMWFGEALARSLFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L     + ++ D + +  +           +   L       +           + 
Sbjct: 60  IMSRLF-DLQREEIFDTAKLFDIALGAMSDLLFPLFLVLATLFTAAMIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K++LV  +    +  +   ++      
Sbjct: 119 QAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVVLVTGVAIYLIQASQADLIQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|308173601|ref|YP_003920306.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606465|emb|CBI42836.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553467|gb|AEB23959.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens
           TA208]
          Length = 359

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   + L+         + S +     
Sbjct: 12  GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   +L + S++  L        S ++ P +L+ ++ GI S  +Q   + +   +KP  
Sbjct: 72  KSIALELSE-SNVHELFVDTVKDISLILAPIMLVALLAGIVSNYMQVGFLFSAEVLKPDL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L      P  +L  
Sbjct: 131 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA
Sbjct: 251 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 311 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356


>gi|311068160|ref|YP_003973083.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942]
 gi|310868677|gb|ADP32152.1| flagellar biosynthesis protein FlhB [Bacillus atrophaeus 1942]
          Length = 360

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   +  +         + S L     
Sbjct: 12  GEKTEKATPKKRQDTRKKGQVAKSADVNTAVSLLVVFLSFIAIGPYMRDRLLSFLETFYT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   KL  +S++  L   L      ++ P +L+ ++ G+ S  +Q   + +   +KP  
Sbjct: 72  ESLTMKLS-MSNVHTLFIDLLKDTGIILAPIMLVALIAGVISNYMQVGILFSAEVIKPDL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L      P  +L  
Sbjct: 131 KKLSPLKGFKRIYSMRAIVELLKSILKIAVVGFAAFLVLWTHYGEILRLPLLTPEEVLSF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALMVLAGLDYLYQKFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP ++AKG + +A K+++IA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEHKMDAPYIIAKGVDHLALKIKQIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 311 KEHDVMTVENRPLARALYDQVEIDQAVPEEFFKVIAEILAYVYKTK 356


>gi|237799251|ref|ZP_04587712.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022106|gb|EGI02163.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 378

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++DA  +G    S+E +    +L     LL F S  I ++ S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGSD-IAAMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + T+  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTITRETLMDQSYMGKALLSSGLHALVVILPFLIAMLVAALVGPIMLGGWLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KS  K +++  +    L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALAVLNSERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEKGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTDLDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|229544411|ref|ZP_04433469.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1]
 gi|229324896|gb|EEN90573.1| flagellar biosynthetic protein FlhB [Bacillus coagulans 36D1]
          Length = 360

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 100/346 (28%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK  DA  +G    S++      +LA  ++L F  S     + +      +
Sbjct: 13  GEKTEKATPKKRRDARKKGQTAKSQDIVTAVMLLAVFLFLYFGASSIGSPMMALFRQAFS 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
               + + + S +  L+T +    + +++P + + ++ G+   + Q   +     +KP+ 
Sbjct: 73  KYMLQDVTEQS-VGKLMTGVMKQLASMLLPVMAVALLAGVVGNVAQTGLLFTGEGLKPNI 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++   G+KRI+SI  LV  +KS +K+ +VG +    +  N   +      +    L  
Sbjct: 132 NKINPVAGLKRIFSIRALVELLKSVLKMAVVGVVAFYVIWANIQDISGLPFKSAGDTLAA 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                    I   + +  L VLD  +    +   ++MSKQEIK+E K   G+P+IK++ +
Sbjct: 192 VGHLAAITGISASVALFVLAVLDYLYQRFDFEKNIRMSKQEIKEEFKNMEGDPLIKSKIR 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTH+A+ LRY +T++DAP++VAKG + +A+K++ IA
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHFAVCLRYDETKSDAPIVVAKGADFLAQKIKSIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH+I + E   LAR+L++QV +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KEHDIVMLENRPLARALYEQVEVGGRIPEQFFKAVAEILAYVYKIK 357


>gi|326389464|ref|ZP_08211031.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994469|gb|EGD52894.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 363

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 107/348 (30%), Positives = 186/348 (53%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + + +  LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILAMPSLGKMMALIKYLLY 73

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMKRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|238919250|ref|YP_002932765.1| flagellar biosynthetic protein FlhB, [Edwardsiella ictaluri 93-146]
 gi|238868819|gb|ACR68530.1| flagellar biosynthetic protein FlhB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 388

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE P+  +IE A  +G  P SRE +    + A L  +L       +S+  
Sbjct: 1   MSE-ESDLEKTEDPTPHRIEKAREKGQIPRSRELTSILMLAAGLAIMLLGGEYLAHSLAE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +  QR L +   ++  L  L   A   ++P L   M+ G  + ++    + + 
Sbjct: 60  MIAQGL-NFDQRLLSNDKQMLIQLGMLLQQAVAALMPVLFGLMLVGWCAPMLIGGFLFSP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +K    R++   G KR++S   L   +K  +K  LVG +    L   +  ML  ++  
Sbjct: 119 SSIKCDLNRLNPLSGFKRMFSSQVLAELLKGILKAALVGWVCGWFLLHYWSRMLRLVTEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A   V    ++++L +  +   D+ +      SKL+M+KQEIKDE K+  G+P
Sbjct: 179 TLDAMGDALHLVGMCGLLVVLGLLPMVGFDVFYQVWSNLSKLRMTKQEIKDEFKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +I+TNPTHYA+AL+Y + +  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAAARRRMMSDVPGADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++ +  EH IP  E P LAR+L++   I  AIP   Y AVA+++  +Y  K
Sbjct: 299 QRIKALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 351


>gi|59712446|ref|YP_205222.1| flagellar biosynthesis protein FlhB [Vibrio fischeri ES114]
 gi|59480547|gb|AAW86334.1| flagellar export pore protein FlhB [Vibrio fischeri ES114]
          Length = 376

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  +SK+++ A ++G    S+E +  S ++   + L++F      ++ S
Sbjct: 1   MAESD-GQERTEDATSKRLQQAKDKGQVARSKELASVSVLVCGAVALMWFGEDVARALFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S ++ ++ D + ++ ++    ++    V   L+   +  +           + 
Sbjct: 60  VMERFF-SISREEIYDTNKLLEIVGGALIALVFPVFLILITLFVAALAGAAGLGGISFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F +++   GIKR++ + + V  +KS +K+ LVG +    +  +   +       
Sbjct: 119 EAAMPKFSKMNPMSGIKRMFGMQSWVELLKSILKVSLVGGMAFYLIEGSKEDLFQLSLDT 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPANIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM     A +++TNP HY++ALRY Q+++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREMTQRRMMADVPSADVVVTNPEHYSVALRYDQSKDAAPIVVAKGVDHVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNI I   P LAR+L+    +   IP   + AVAQ++  I+  K
Sbjct: 299 MKIREIAREHNIDILPAPPLARALYHSTELEQQIPDGLFAAVAQILAYIFQMK 351


>gi|302185378|ref|ZP_07262051.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           syringae 642]
          Length = 378

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 185/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++DA  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDARADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|183598609|ref|ZP_02960102.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827]
 gi|188020787|gb|EDU58827.1| hypothetical protein PROSTU_02008 [Providencia stuartii ATCC 25827]
          Length = 383

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ ++   KTE P+  K + A ++G    S+E S    +LA  + LL+     +     
Sbjct: 1   MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAG-VSLLWLSGGHLADELR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +           +++   +V     +   A   ++P +    + GI +  +    + N 
Sbjct: 59  QIFRQGFIFDGHYIQNTLLMVSYFGRMVGEALFALLPVIGGLALVGISASSLVGGLLFNS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+++   G+KRI+S+N L    K+ +K + VG    I L +N+ ++L  ++ +
Sbjct: 119 KLIKFDLKKLNPISGLKRIFSMNALSELFKAILKSLFVGLGAAIFLWQNWSSLLHLVTES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L +A   V     +I+  +  +   D+ + +     KL+MS+QEIKDE KQ  G+P
Sbjct: 179 PVTALGNAMHKVIFAGYLIVFLLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R+  R++MM    +A +I+TNPTHYA+AL+Y      AP ++AKG  +IA
Sbjct: 239 QIKAKIRQQQRAIARNRMMADVPQADVIVTNPTHYAVALKYDDKRMGAPKVLAKGAGVIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++I  EH I   E P LAR+L++   I  +IP   Y AVA+++  +Y  +
Sbjct: 299 QRIKEIGQEHRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351


>gi|154686055|ref|YP_001421216.1| flagellar biosynthesis protein FlhB [Bacillus amyloliquefaciens
           FZB42]
 gi|154351906|gb|ABS73985.1| FlhB [Bacillus amyloliquefaciens FZB42]
          Length = 359

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/346 (30%), Positives = 178/346 (51%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   + L+         + S +     
Sbjct: 12  GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +    L   S +  L        S ++ P +L+ ++ G+ S  +Q   + +   +KP  
Sbjct: 72  KSISLHLS-ASAVHELFVDTVKDISLILAPIMLVALVAGVVSNYMQVGFLFSAEVLKPDL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L      P  +L  
Sbjct: 131 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA
Sbjct: 251 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 311 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 356


>gi|254250896|ref|ZP_04944214.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124893505|gb|EAY67385.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 414

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 178/350 (50%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +++  ++TEA + ++ E A  EG    SRE + F+ + A          P    + + L 
Sbjct: 18  DESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPSGTHLQTMLR 77

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++      S+     ++P L L  +  + + +     +L+    
Sbjct: 78  GAF-SFDRATAFDTNRMLSAAGSASVEGLAALLPLLALTGLAALLAPMALGGWLLSQKTF 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +    +
Sbjct: 137 ELKFDRLNPIAGLGRIFSIQGPIQLAMSVAKTLVVGGIGGIAIWRSKDELLGLATRPLGT 196

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 197 ALADALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 256

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 257 GRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVAARI 316

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 317 RELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 366


>gi|313672722|ref|YP_004050833.1| flagellar biosynthetic protein flhb [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939478|gb|ADR18670.1| flagellar biosynthetic protein FlhB [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 353

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 194/353 (54%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M +ND+   +TE  + ++ + A+ EGN P SRE S   + L  ++ L F+    +    +
Sbjct: 1   MPDNDSD--RTEEATPRRKQKAIEEGNVPRSRELSTGITFLIAVLILYFYIPSMVEEFKT 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D     +    R   +      LL  +  S +++ +P L + +   I + ++Q   V + 
Sbjct: 59  DFIRYFSMYNYRI--NKESAYLLLIEVIKSMAKVTLPLLFVLVFVAILANIVQFGVVFSS 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++  + R++   G  R++S  +L   +KS +KI L+G    + +     T+L    A+
Sbjct: 117 KVLELKWDRLNPISGFGRLFSKKSLFELLKSILKISLIGFAAFLIIKSKIPTILTLADAD 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S ++     + +V   + + I  + ++D  +   Q+Y  LKM+KQE+K+E KQ  G+P
Sbjct: 177 AVSSIHFLGKLIYEVSFKLAIIIMVIALIDFLYQRWQYYEDLKMTKQEVKEEFKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +S+ R   R +MME   +A ++ITNPTHYA+A++Y   ++ AP +VAKGQ LIA
Sbjct: 237 LIKQRIRSMQREMARKRMMEEVPKADVVITNPTHYAVAIKYDMAKDRAPKVVAKGQRLIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA ++N+ I E+P LAR+L+  V I   IP   YKAVA+++  +Y  K
Sbjct: 297 LKIREIASKNNVLIHEDPPLARTLYSSVEIGEEIPENLYKAVAEILAMVYRLK 349


>gi|307945650|ref|ZP_07660986.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4]
 gi|307771523|gb|EFO30748.1| flagellar biosynthetic protein FlhB [Roseibium sp. TrichSKD4]
          Length = 359

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 194/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ K+++DAL++G+   S+E S + ++    + +  F      +V +
Sbjct: 1   MADDQDDAEKTEDPTQKRLKDALDKGDVAKSQEVSTWFTLAGTTLLIALFAPTIGAAVGN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   +  A    + D   +  L      S + +V   L+  ++  I   ++Q   V   
Sbjct: 61  HLKGFMEHAHDIPV-DGFALKALWRDTGQSIALIVGLPLMALVVMAIAGNMVQHQLVFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   +VS   G KR++S ++LVNF K   KI +VG ++ + L  +       I A+
Sbjct: 120 ETMKPKLSKVSPLSGFKRLFSKDSLVNFAKGLAKIFVVGALMVLVLWPHRDEADIMIFAD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +L  A F + ++L  ++ F+  +   D  +  ++W++K KMS +++KDE KQ+ G+P
Sbjct: 180 PVILLEEARFLILQLLGAVMAFMTVVAAADYAYQKNKWFNKQKMSLRDVKDEYKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + +   R R +MM A   AT+++TNPTH+A+AL+Y +    AP+ +AKG + +A
Sbjct: 240 HVKGKIRQLRMERSRKRMMAAVPDATVVVTNPTHFAVALKYEEG-MGAPLCLAKGTDAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A E  IP+ E P LAR+L+  V I   +P   YKAVA++I  +Y  +
Sbjct: 299 LKIRELAKEKKIPVVENPPLARALYASVEIEQEVPEEHYKAVAEVIGFVYRMR 351


>gi|134294343|ref|YP_001118078.1| flagellar biosynthesis protein FlhB [Burkholderia vietnamiensis G4]
 gi|134137500|gb|ABO53243.1| flagellar biosynthetic protein FlhB [Burkholderia vietnamiensis G4]
          Length = 399

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGTWLVSGPSGAHLQT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  +    D   ++      S      V+P L L  +  + + +     +++ 
Sbjct: 60  MLRSAF-TFDRATAFDTHRMLSAAGTASAEGLAAVLPILALTGLAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R+    G+ R++SI   +    S  K ++VG I  +++  +   +L   +  
Sbjct: 119 KTFELKFDRLDPIAGLGRMFSIQGPIQLAMSVAKTMVVGGIGGVAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V       +  +  L  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGAALADALHLVAVCCGTTVAGMLVLAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGSLYSAVAEVLAWVYQLK 351


>gi|146307831|ref|YP_001188296.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp]
 gi|145576032|gb|ABP85564.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp]
          Length = 378

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++   K+E P+SK++E++  +G    S+E +  +  L   + L+ F +     +  
Sbjct: 1   MAESESGAEKSEEPTSKRLEESRKKGQIARSKELNTLAVTLTGTVALIIFGAYMGNVLMD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +    +   +  + + S  ++LL      A   + P  L  ++  +   +     + + 
Sbjct: 61  LMRGNFSLPREVLMHEGSMALYLLAS-GKHALVAIQPLFLALLIASVIGPIALGGWLFSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R++   G+KR++S+  LV  +K+  K +++  +  + L  +   +L   +  
Sbjct: 120 EALQPKASRMNPLAGLKRMFSVQALVELLKALAKFLVILAVALVVLALDQDDLLAIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +  +D+ +       KLKM+KQE++DE K + G P
Sbjct: 180 VEPAILHSLRVVGWSAFWLSCGLILIAAVDVPFQLWSHKQKLKMTKQEVRDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     +MM+A  +A ++ITNPTH+A+AL+Y   +  AP+L+AKG + +A
Sbjct: 240 EVKGRIRQLQREMAERRMMQAVPQADVVITNPTHFAVALKYDPEKGGAPMLLAKGGDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAQEHKVMVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352


>gi|330972452|gb|EGH72518.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 378

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGSD-IALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KS  K +++  +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSLGKFLIILAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFVAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|310641562|ref|YP_003946320.1| flagellar biosynthetic protein flhb [Paenibacillus polymyxa SC2]
 gi|309246512|gb|ADO56079.1| Flagellar biosynthetic protein FlhB [Paenibacillus polymyxa SC2]
          Length = 370

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK +DA  +G    S E      +L     L+ F              + 
Sbjct: 21  SGEKTEKATPKKKQDARQKGQVAKSMELPAAGVLLVTFFCLMIFGGYFKDHAVRLFRDIF 80

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +    ++   +  + ++    +    ++ P  +  ++ GI +  +Q   +L    + P 
Sbjct: 81  VNRLSMEV-TPNTTLLMMGEYGVQILIMLAPIFVGAIVIGIAANYMQIGFLLTGEGITPK 139

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F ++   +G K I+S+ +LV F+KS +K+ ++G ++   L +    +      +   +L 
Sbjct: 140 FSKIDPIKGFKNIFSMRSLVEFLKSVLKMTVIGYLVYSVLWKTKADLPKLAEMSGDQMLS 199

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  ++ + I + +  L +LD  +  ++    LKMSKQ+IKDE K+  G+P+IK + 
Sbjct: 200 FTASLTMELGLKIGVVLFILAILDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKI 259

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+    A +IITNPTH+A+AL+Y  +E +AP ++AKGQ+ +A ++++I
Sbjct: 260 RERQRRMAMQRMMQEVPNADVIITNPTHFAVALKYDGSEMEAPQIIAKGQDYVALRIKEI 319

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A +  +   E   LAR+LF++  I  AIP   ++AVA+++  +Y  K
Sbjct: 320 AKQSGVITMENKPLARALFQRAEIGDAIPADLFQAVAEVLAYVYKLK 366


>gi|330815159|ref|YP_004358864.1| FlhB [Burkholderia gladioli BSR3]
 gi|327367552|gb|AEA58908.1| FlhB [Burkholderia gladioli BSR3]
          Length = 404

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  + ++ E A  EG    SRE S F+ + A          P    + +
Sbjct: 1   MAE-DSDLEKTEEATPRRREKAREEGQVARSRELSSFALLAAGFYGAWMLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +    D   ++       +     + P L L  +  + + +     +L+ 
Sbjct: 60  MLRGSLG-FDRAAAFDTHAMLTGAGRAGMEGLSALAPVLALTGLAALAAPIALGGWLLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F R++   G+ RI+S+  L+    +  K ++VG I  I++ ++   +L  +   
Sbjct: 119 KAIGFKFDRLNPISGLGRIFSLQGLIQLGMALAKTVVVGGIGGIAIWKSREELLGLMMLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L      V     + +  +  +  +D+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHQALADTLHLVAVCCGVTVAGMLVVAGMDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+ALRY   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRAPKVVAKGINLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH +PI E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAEEHRVPILEAPPLARALYHNVELEREIPGPLYSAVAEVLAWVYQLK 351


>gi|328911742|gb|AEB63338.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens LL3]
          Length = 360

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   + L+         + S +     
Sbjct: 13  GEKTEKATPKKRKDTRKKGQVAKSTDVNTAVSLLIIFLSLIALGPYMRDRLLSFIKTFYT 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   +L + S++  L        S ++ P +L+ ++ GI S  +Q   + +   +KP  
Sbjct: 73  KSIALELSE-SNVHELFVDTVKDISLILAPIMLVALLAGIVSNYMQVGFLFSAEVLKPDL 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++S  +G KRIYS+  +V  +KS +KI +VG    + L  +Y  +L      P  +L  
Sbjct: 132 NKLSPLKGFKRIYSMRAIVELVKSILKITVVGFAAFMVLWLHYGDILRLPLLTPAEVLTF 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   ++MSKQ+IKDE K+S G+PIIK++ K
Sbjct: 192 VSKLTLWMGLAGSGALMLLAGLDYLYQRFDYEKNIRMSKQDIKDEYKKSEGDPIIKSKIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+R+IA
Sbjct: 252 QKQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEKKMDAPYIVAKGVDHLALKIRQIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 312 KEHDVMTIENRPLARALYDQVDIDQAVPEEFFKVIAEILAYVYKTK 357


>gi|297538882|ref|YP_003674651.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301]
 gi|297258229|gb|ADI30074.1| flagellar biosynthetic protein FlhB [Methylotenera sp. 301]
          Length = 394

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 182/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  SSK++E+A  EG+ P SRE +  + +    + +L        ++ +
Sbjct: 1   MAE-DSDLEKTEQASSKRLEEARKEGDVPRSRELATVTVLFTAGLTILIMSEHLNQALKT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    +    + + ++        S      P  L+ +   I + ++    + + 
Sbjct: 60  TMSAGL-QFDRTAAFEPTVLLMRTADSISSLLTAFAPLALILVAVAIAAPVLVGGWIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F R++  +G+  I S N+LV  +KS  K++LVG +  + ++ +   +L   +  
Sbjct: 119 KAFVPQFSRLNPIKGLTNIISKNSLVELVKSIAKVMLVGIVAYVVISHDMEPILTLSTLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +      +    + I+  +  +  +D+ +  + + +KLKM+K+E++ E K+S GNP
Sbjct: 179 LKSSIAQVGSLMLTGFLTIVSTLVFIAAIDVPYQLYHYANKLKMTKEEVRQESKESDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R   + +MM     A ++ITNPTHYA+A++Y      APV+VAKG + +A
Sbjct: 239 EIKAKIRQQQREMAKRRMMSEIPNADVVITNPTHYAVAIKYQDEGMRAPVVVAKGADEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
            K+R++A EH + I E P LAR+L+    + + IP   Y AVA+++  ++  +I
Sbjct: 299 LKIREVAGEHKVLIMESPKLARALYAHTELGNEIPEALYSAVAEILAYVFQMRI 352


>gi|88800470|ref|ZP_01116034.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp.
           MED297]
 gi|88776800|gb|EAR08011.1| Flagellar biosynthesis pathway, component FlhB [Reinekea sp.
           MED297]
          Length = 378

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 100/351 (28%), Positives = 176/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE P+ +K+E A  +G+   S+E +  + ++   I  L  F   + +   
Sbjct: 1   MAEQDTSQEKTEEPTPRKLEKAKEDGDIARSKELNTSAILIVSAICFL-VFGRMMGTTMM 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S   R   D+      ++ ++  A   ++P     ++  + + +       + 
Sbjct: 60  RIMEFCFSFDPRASWDVIVAGEYVSVVAGEALLSIVPLFGFLLLAALFAPIGLGGWNFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   GIKR++S+N+LV  +K + K+I+V T   + L       L  +   
Sbjct: 120 KALAPKGSRMNPLSGIKRMFSMNSLVELLKGWGKVIVVATAAILVLISLKNEFLSMVFQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S + HA   +    +++      + ++DI +  +    KL+M+ QEIK+E K + G P
Sbjct: 180 TESAITHAVEVIAWSFLLLAASTVLIAIVDIPFQIYSHTKKLRMTMQEIKEEYKNTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + K + R     +MM     A +IITNPTHYA+AL+Y      AP++VAKG + +A
Sbjct: 240 EVKAKIKQLQREMANRRMMSDVPEADVIITNPTHYAVALKYDPNAMPAPLMVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+I  E+++P+ E P+LARS++    I   IP   Y AVAQ++  IY 
Sbjct: 300 FKIREIGQEYDVPVLEMPALARSIYHHTRIGDEIPEGLYVAVAQVLAYIYQ 350


>gi|53720905|ref|YP_109891.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           K96243]
 gi|53724312|ref|YP_104358.1| flagellar biosynthesis protein FlhB [Burkholderia mallei ATCC
           23344]
 gi|167817864|ref|ZP_02449544.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 91]
 gi|167847750|ref|ZP_02473258.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           B7210]
 gi|52211319|emb|CAH37308.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           K96243]
 gi|52427735|gb|AAU48328.1| flagellar biosynthetic protein FlhB [Burkholderia mallei ATCC
           23344]
          Length = 405

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|292488559|ref|YP_003531443.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|292899731|ref|YP_003539100.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946]
 gi|291199579|emb|CBJ46696.1| flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC 49946]
 gi|291553990|emb|CBA21035.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|312172704|emb|CBX80960.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 383

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+ + KTE+P++ ++E A  EG  P SRE +    ++  L  L          + +
Sbjct: 1   MS-QDSDEEKTESPTAHRLEKAREEGQIPRSRELTSILMLITGLSILWVGGEWMGRKMGA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D S ++ L+ ++ L A   V+P +   ++  I + ++    VL+ 
Sbjct: 60  LLADGLV-FNHSVVSDSSQMLRLVANMLLQAVMAVLPMMFGLVVVAIAAPMLLGGLVLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ +++S  +    +K+ +K  LVG +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDPGKMNPVKGLAKLFSAQSASELLKAVLKATLVGIVCGLYIWHHWAGMLHLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PLIALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP ++AKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDEKKMSAPKVLAKGAGDIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+ IPI E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 299 LRIRELAAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351


>gi|332533113|ref|ZP_08408982.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037395|gb|EGI73849.1| flagellar biosynthesis protein FlhB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 376

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 168/353 (47%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE P+ KK++++  +G    S+E      ++   I LL +       + +
Sbjct: 1   MSE-DSGQEKTEEPTGKKVDESKKKGQVARSKELGTMFVLIFSAISLLLYGPEIGKGLYN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +L S  + +  D + +  +   +S      +   + + +  GI    +      + 
Sbjct: 60  IMGRML-SLNRNEAYDTTKMFAVWASVSDVLIFPMAMFVFIILFAGIIGNTLLGGFNFSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   ++S  +G KR++     V   K+ +K  +V       +   +  +L      
Sbjct: 119 QAAAPKASKMSPFKGFKRMFGPQAAVELTKAILKFSVVAGFAVFLINTFFDEILHLSIEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + + HA   +  + + +   +  +  +D  +  +  + +LKM+ QE+KDE K S G+P
Sbjct: 179 APNNIIHALEILAWMFLALSCTLVIIAAIDAPYQSYTHHKQLKMTMQEVKDEYKNSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP+++AKG + +A
Sbjct: 239 QIKARIRQTQRQMSQRRMMQDVPDADVIVTNPTHYSVALKYDTERAGAPIVLAKGIDEMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++RK+A  + +PI E P L R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MQIRKVAIGNEVPILESPMLTRALYHTAEVGEQIPDQLFTAVAQVLAYVFQLK 351


>gi|167721674|ref|ZP_02404910.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           DM98]
          Length = 405

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|170702808|ref|ZP_02893660.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria
           IOP40-10]
 gi|170132277|gb|EDT00753.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria
           IOP40-10]
          Length = 399

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A         +P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A   +    D   ++      S+     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351


>gi|330880588|gb|EGH14737.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 378

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 187/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGS-GIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    L A  +++P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K +++  +  + L+     ++  +   
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIVHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ +  L M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKTLLMTKQEVRDEQKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|134094535|ref|YP_001099610.1| part of export apparatus for flagellar proteins [Herminiimonas
           arsenicoxydans]
 gi|133738438|emb|CAL61483.1| Flagellar biosynthetic protein FlhB [Herminiimonas arsenicoxydans]
          Length = 390

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 180/356 (50%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTE  S +K+E A  +G+ P SRE +  + +L       F       ++ +
Sbjct: 1   MAE-ESDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGASAAFWFTGG----NMIA 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI---PGLLLFMMFGIGSYLIQRIPV 117
           +L+ +LAS      E    +  LL H + S  +L+I   P  L+ ++  + S ++    +
Sbjct: 56  ELNSMLASGLSFDREMAFDMELLLAHAAASIIKLLIAFAPAALILIVVALASPMLIGGWL 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   ++P+F R++  +G+  + S  + V   K+  K IL+G I    +      +L   
Sbjct: 116 FSAQALQPNFGRMNPIKGLGNMVSTRSAVELGKAIAKTILIGCIAWTVMKYEIDGVLALS 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                S +      +      I+  +  +  +D  +   Q   KL MS+Q+++ E K+S 
Sbjct: 176 VTPLQSGIEQVGHILLISFTFIVSGLIIIAGIDAPYQMWQHAKKLMMSRQDVRQESKESD 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP IK + +   R   R +MM     A +++TNPTHYA+AL+Y +    AP +VAKG +
Sbjct: 236 GNPEIKAKIRQQQREMARRRMMTEVPTADVVVTNPTHYAVALKYSENGMRAPTVVAKGAD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A K+R+IA E+N+ + E P LAR+LF+   +   IP   Y AVA+++  ++  +
Sbjct: 296 EVAAKIREIALENNVVMLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLR 351


>gi|56460295|ref|YP_155576.1| flagellar biosynthesis protein FlhB [Idiomarina loihiensis L2TR]
 gi|56179305|gb|AAV82027.1| Flagellar biosynthesis proten FlhB [Idiomarina loihiensis L2TR]
          Length = 375

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 172/354 (48%), Gaps = 3/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    +TE P+ ++ + A ++G    S+E      +++  +   F+F   +Y    
Sbjct: 1   MAETD--QERTEDPTERRKQQARDKGQIARSKEMGTGFVLVSAAVSF-FWFGGALYQGVR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  ++ +  ++   D S +              ++      ++F             + 
Sbjct: 58  NVFEIMFTLDRQHAFDTSKMYEAFAIAFGEILWPILTIFAFIVVFTFLGNSWLGGINFSA 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G KR++ +  LV  +K+  K ++V       L   +  +L      
Sbjct: 118 QAMAPKFNRMNPLNGFKRMFGVQALVELIKAIAKFMVVAVSAYFLLKWKFVDILQMSMGQ 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +++ +A  T+  + +++ L I  + V+D  +   +    LKMSKQE+KDE K + G+P
Sbjct: 178 MPTMIENALDTLLWMFLLLCLSIFLIVVIDAPFQVWKHNKDLKMSKQEVKDEHKDTEGSP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +       +MM+   +A +++TNPTHYA+AL+Y      APVL+AKG +  A
Sbjct: 238 EVKGRIRRLQMEMANRRMMQEVPKADVVVTNPTHYAVALKYDDGGVQAPVLLAKGTDETA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
            K+R+IA E+ IP+   P LARS++    +   IP   + AVAQ++  +Y  ++
Sbjct: 298 AKIREIALEYEIPLVASPGLARSIYHTTELEKEIPKGLFVAVAQILAYVYQLRM 351


>gi|171321732|ref|ZP_02910646.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
 gi|171092980|gb|EDT38217.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
          Length = 399

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A         +P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A   +    D   ++      S+     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +  + S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLLMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGSALADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351


>gi|312884898|ref|ZP_07744588.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367375|gb|EFP94937.1| flagellar biosynthesis protein FlhB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 376

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F S     + S
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASVSVLIIGAIALMWFGSFLAKGLFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++          ++  LL+  +  +           ++
Sbjct: 60  VMGRLF-DLSREEIFDLDKLFDIILGSVGELVFPLLLILLVLFLAALIGAAGVGGINFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P + +++   G+KR+  + + V  +KS +K+ LV  +    + +    +       
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGVQSWVELIKSILKVTLVSGMAFYLINDAKQDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +D+ +   Q  ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCTLLLVAAIDVPFQIWQHANQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP HY++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHYSVALRYRQDTDKAPIVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P L R+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREVAREHDIYIVPAPPLTRALYFSTELEQEIPDGLFTAVAQILAYVFQLK 351


>gi|295097231|emb|CBK86321.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 381

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    D KTE P+  + + A  EG  P SRE +  + +L     ++   S     + S
Sbjct: 1   MSEESESD-KTEDPTPHRKQKAREEGQVPRSRELTTLAMLLVGWGLIVGAGSHLATQLES 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  L +  +  + D  +++     L   A   ++P      +  I +  I      + 
Sbjct: 60  ILHNGL-TFDRLLIRDPQNMLHRAASLLSMAFLAILPFAGGLYVTAITAPSIIGGLNASS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K + K+++   GIKR++S   +   +KS +K++L  T   + L  N    ++ +   
Sbjct: 119 KALKVNLKKLNPVTGIKRLFSAQMVSEMIKSILKVLLAATGGGLFLLLNKSRFINLMYEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   ++ ++L +  +   D+ +     + KL+MS+QEIKDE K   G+P
Sbjct: 179 LGGALNDISNLLIGCMLYVILSLIPMVAFDVIYQLWSNFKKLRMSRQEIKDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I R   + +MM     A +++ NPTHY++AL+Y +    AP++VA G  LIA
Sbjct: 239 HIKGRVRQIQRQMAQSRMMAEVPTADVVVNNPTHYSVALKYQEGTMGAPIVVASGSGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+ +P+ E P LAR+L++       +P   Y AVA+++  +Y  +
Sbjct: 299 LRIREMAEENRVPMLEAPPLARALYRHCEPGQPVPGELYNAVAEVLAWVYSLR 351


>gi|163801858|ref|ZP_02195755.1| flagellar biosynthesis protein B [Vibrio sp. AND4]
 gi|159174366|gb|EDP59170.1| flagellar biosynthesis protein B [Vibrio sp. AND4]
          Length = 376

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+D    +TE  + K+++ A  +G    S+E +  S ++   I L++F      S+ +
Sbjct: 1   MSESD-GQERTEDATPKRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    T+ ++ D + +  +           +   L+   +  +           + 
Sbjct: 60  IMSRLF-DLTRDEIFDTAKLFDIAFGAMADLLFPLFLILITLFIAALIGAAGVGGVSFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVGLVAGMAIYLIQASQSDLIQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA  T+   +++I   +  +  +DI +   Q  ++LKM+KQEIKDE K++ G P
Sbjct: 179 YPQNIFHALDTLLNFILLISCSLLIVVAIDIPFQIWQHANQLKMTKQEIKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + AP+++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPIVIAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVARENDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|88813214|ref|ZP_01128454.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
 gi|88789536|gb|EAR20663.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
          Length = 385

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 103/354 (29%), Positives = 186/354 (52%), Gaps = 2/354 (0%)

Query: 1   MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E     + KTEAP++K+  +A  +G  P SRE +   ++L+    LL F +    S+ 
Sbjct: 1   MAEEHSNGEEKTEAPTAKRRHEAKEQGQVPRSRELTTLLAMLSAAGGLLIFGNYMTDSLA 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L    +  + D    + LL  +       V P  L+ ++  + + +       +
Sbjct: 61  DALRQGL-HVGRDAIFDPQAPIRLLREMIAQGLWAVGPLALVLLLVALVAPVALGGWTFS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P   ++   +G+KR++ ++ LV   KS  K++LVG + T +L ++        + 
Sbjct: 120 AKALAPKLSKLDPVKGLKRLFGVHGLVELGKSLAKVMLVGAVGTYALWQSLDDFQALAAE 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                L HA        +M+   +  + ++D+ +       KL+M+KQE+KDE+KQ+ G 
Sbjct: 180 ALFPALQHAARIFNTTFLMLATALILIALVDVPFQLWDHTRKLRMTKQELKDELKQTEGK 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K+R + + +   + +MME   +A +++TNPTH+A+ALRY      AP L+AKG +LI
Sbjct: 240 PEVKSRIRQLQQQAAQGRMMEQVPKADVVVTNPTHFAVALRYDPLHMRAPRLMAKGTDLI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+++R+IA ++ +P+FE P LAR+L     ++  +P   Y AVAQ++  IY  +
Sbjct: 300 AQRIRRIAEDNGVPLFEAPPLARALHYTTELDQEVPAGLYLAVAQVLAYIYQLR 353


>gi|167740656|ref|ZP_02413430.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 14]
 gi|167826242|ref|ZP_02457713.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 9]
 gi|167896340|ref|ZP_02483742.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           7894]
 gi|167904714|ref|ZP_02491919.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC
           13177]
 gi|167912992|ref|ZP_02500083.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 112]
 gi|42766716|gb|AAS45441.1| FlhB [Burkholderia pseudomallei]
          Length = 405

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  AAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|118588696|ref|ZP_01546104.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
 gi|118438682|gb|EAV45315.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
          Length = 359

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 196/353 (55%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ K++++A ++G+ P S+E S + ++    + +  F      S+  
Sbjct: 1   MADDSDDSEKTEDPTHKRLKEAHDKGDVPKSQEVSTWFTLAGATLMIAIFAPSTAVSLGE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L  A Q  + D   +  L      S + +V   LL  ++  +   L+Q  P+L  
Sbjct: 61  MMKGYLEHAHQIAV-DGYALKALWRDTGQSVALIVGIPLLALVIMAVAGNLVQHQPLLTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   +VS   G KR++S  +LVNF K  +KI +VG I+   +  +       + A+
Sbjct: 120 ETIKPKLSKVSPASGFKRLFSSESLVNFAKGMIKISVVGAIMVAVMWPHRDEAEVMVFAD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            + IL  A   + ++L  +L  +  +   D  +  ++W++K KMS +E+K+E KQ+ G+P
Sbjct: 180 TNIILEEARILILQLLSAVLAVMTVVAGADFIYQRNKWFNKQKMSLREVKEEYKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +   R R +MM A  +AT+++TNPTHYA+AL+Y +    AP+ +AKG + IA
Sbjct: 240 QIKGKIRQLRMERSRKRMMSAVPQATVVVTNPTHYAVALKYEEG-MGAPLCLAKGTDAIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E +IP+ E P LAR+L+  V I+  +P   YKAVA++I  ++  +
Sbjct: 299 LKIREIAKESDIPVVENPPLARALYATVEIDQEVPEEHYKAVAEVIGFVFRMR 351


>gi|221202387|ref|ZP_03575420.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans
           CGD2M]
 gi|221208974|ref|ZP_03581970.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2]
 gi|221171096|gb|EEE03547.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD2]
 gi|221177801|gb|EEE10215.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans
           CGD2M]
          Length = 399

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A   +    D   ++      SL     ++P L L     + + +     +++ 
Sbjct: 60  MLRGAFA-FDRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAALLAPMALGGWLISP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  +++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351


>gi|323491458|ref|ZP_08096642.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546]
 gi|323314327|gb|EGA67407.1| flagellar biosynthesis protein FlhB [Vibrio brasiliensis LMG 20546]
          Length = 376

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++ +
Sbjct: 1   MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVIGSVALMWFGEGLARALFT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D   +  +      S    ++  L+   +  +           ++
Sbjct: 60  AMGRLF-SLSREEIFDQVKLFDIALGSLSSLLLPLLLILVTLFIAALIGAAGVGGISFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P + +++   G+KR+  + + V  +KS +K+ LV  +    +      +       
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCTLLLVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDSDRAPIVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREHDIYVVPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351


>gi|66046670|ref|YP_236511.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257377|gb|AAY38473.1| Flagellar biosynthetic protein FlhB [Pseudomonas syringae pv.
           syringae B728a]
 gi|330899444|gb|EGH30863.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 378

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|148976426|ref|ZP_01813132.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3]
 gi|145964249|gb|EDK29505.1| flagellar biosynthesis protein B [Vibrionales bacterium SWAT-3]
          Length = 376

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++  
Sbjct: 1   MAESD-GQERTEDATPRRLQQAKEKGQVARSKELASASVLIVGAVALMWFGESMAKALFE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D + ++ +     ++    +   L+   +  +           ++
Sbjct: 60  AMQRLF-SLSRDEIFDTNKLLEIAGGALVNLLFPLFLILITLFIAAVIGAAGVGGINFSM 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELIKSILKVALVSGMAVYLIQASQHDLMQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEFKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q ++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVVAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREIAREHDIYIVPAPPLARALYHTTELEQQIPDGLFTAVAQVLAYVFQLK 351


>gi|84388124|ref|ZP_00991020.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
 gi|84377191|gb|EAP94061.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
          Length = 376

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + K+++ A  +G    S+E +  S ++   I L++F      ++  
Sbjct: 1   MAESD-GQERTEDATPKRLQQAKEKGQVARSKELASASVLIVGAISLMWFGESMAKALFE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D + ++ +     ++    +   L+   +  +           ++
Sbjct: 60  AMQRLF-SLSRDEIFDTNKLLEIAGGALVNLLFPLFLILITLFVAAVIGAAGVGGVNFSM 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   GIKR++ + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 QAAMPKASKLNPLSGIKRMFGLQSWVELLKSILKVALVSGMAIYLIQASQHDLMQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEFKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q ++ AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHFSVALRYKQNQDKAPIVVAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREIARENDIYIIPAPPLARALYHTTELEQQIPDGLFAAVAQVLAYVFQLK 351


>gi|156975417|ref|YP_001446324.1| flagellar biosynthesis protein FlhB [Vibrio harveyi ATCC BAA-1116]
 gi|156527011|gb|ABU72097.1| hypothetical protein VIBHAR_03148 [Vibrio harveyi ATCC BAA-1116]
          Length = 376

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      S+ S
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    T+ ++ D + +  +           +   L+   +  +           + 
Sbjct: 60  IMSRLF-DLTRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|22034295|gb|AAL01537.1| FlhB [Escherichia fergusonii]
          Length = 381

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE +    KTE P+  + + A  EG  P SRE +  S +LA    LL   +     +  
Sbjct: 1   MSEENDS-EKTEDPTPHRKQKAREEGQVPRSRELTSLSMLLAGWGLLLVGGNYLAKQLQH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  L +  +  + D  H++     L   A   ++P +    +  + +  I     ++ 
Sbjct: 60  LLHNGL-TFDRLLVSDPQHMLHHAAALLGMAFLAILPFVGGLFITALVTPSIIGGLNMSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K + K+++   GIKR++S   +   +KS +K++L G    + L  N    ++ I   
Sbjct: 119 KAIKFNLKKLNPLSGIKRLFSGQMVSEMVKSILKVLLAGIGGGLFLWLNKAKFINLIFEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   +++I+L +  +   D+ +     + KL+MS +EIKDE K   G+P
Sbjct: 179 LGMALADISALLIGCMLVIILSLIPMVAFDVIYQLWSNFKKLRMSLKEIKDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   + +MM     A +++ NPTHY++AL+Y +    AP++VA G  LIA
Sbjct: 239 QIKARVRQLQRQMAQQRMMTDVPTADVVVNNPTHYSVALKYQEGAMGAPMVVASGSGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+ +P+ E P LAR+L++     + +P   Y AVA+++  +Y  K
Sbjct: 299 LRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYGLK 351


>gi|317403765|gb|EFV84247.1| flagellar biosynthetic protein FlhB [Achromobacter xylosoxidans
           C54]
          Length = 384

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/353 (31%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTEA S +++E A  EG    SRE   F  +LA  +  ++     IY   S
Sbjct: 1   MAE-ESDLEKTEAASPRRLEKAREEGQIARSRELGTFM-MLAVGVGAIWAGGGTIYKGLS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +  QR + D   +V    +    A  +++P   L  +  + S ++    V++ 
Sbjct: 59  GVLRNGLAFDQRVVADPGVMVEQAVNGFGHALMVILPIFGLLAVIAVLSSVLLGGIVISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F ++SL  G+KR++S   +V  +K+  K +LVG +    L   +  ML  +   
Sbjct: 119 KPLSPNFSKLSLFAGLKRMFSAQTVVELIKALAKAMLVGGVAVWILWRYHDDMLGLMHVA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   V      I+  +  + +LD+ W       KL+MSK++++ E K+S G+P
Sbjct: 179 PSAALTKALSLVAMCCAFIVASLLVIVLLDVPWQIWSHLKKLRMSKEDVRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
             K R +   R   R +MM    +A +++TNPTHYA+AL+Y + +N AP ++AKG  LIA
Sbjct: 239 HTKARIRQQQRQAARRRMMSEVPKADVVVTNPTHYAVALKYEEDKNGAPRVLAKGTGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH IP  E P LAR+L + V +   IP   Y AVA+++  ++  +
Sbjct: 299 AKIRELAAEHRIPTLEAPPLARALHQHVELGQEIPAELYTAVAEVLAWVFQLR 351


>gi|261344152|ref|ZP_05971796.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM
           4541]
 gi|282567746|gb|EFB73281.1| flagellar biosynthetic protein FlhB [Providencia rustigianii DSM
           4541]
          Length = 383

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ ++   KTE P+  K + A ++G    S+E S    +LA +  L          +  
Sbjct: 1   MSD-ESDVEKTEEPTPHKKQKAKDDGQIVRSKELSSLMMMLAGVSLLWLSGGHLAAQLRQ 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +           L++   ++  L  +   A   ++P +    + GI +  +    + N 
Sbjct: 60  IMRQGFI-FDGHYLQNTKLMLNYLGSVVSEALFALLPVIGGLALVGISASSLVGGLLFNS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K++   +G+KRI+S+N L    K+ +K + VG    I L +++ ++L  +   
Sbjct: 119 KLIKFDPKKLDPIKGLKRIFSMNALSELFKAILKSLFVGLGTWIFLWQSWPSLLHLVMEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L +A   V     +I+  +  +   D+ + +     KL+MS+QEIKDE KQ  G+P
Sbjct: 179 PVTALGNALEKVIFAGYLIVFMLIPMVAFDVFYQFRSHLKKLRMSRQEIKDEFKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   R+  R++MM     A +I+TNPTHYA+AL+Y   +  AP ++AKG  +IA
Sbjct: 239 HIKAKIRQQQRAIARNRMMADVPSADVIVTNPTHYAVALKYDDKKMGAPKVLAKGAGVIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++I  E+ I   E P LAR+L++   I  +IP   Y AVA+++  +Y  +
Sbjct: 299 QRIKEIGEENRILQLEAPPLARALYRHAEIGQSIPVALYAAVAEVLAWVYQLR 351


>gi|188533614|ref|YP_001907411.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99]
 gi|188028656|emb|CAO96518.1| Flagellar biosynthesis protein FlhB [Erwinia tasmaniensis Et1/99]
          Length = 383

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+   KTE+P++ ++E A  EG  P SRE +    ++A L  L          + +
Sbjct: 1   MS-QDSDQEKTESPTAHRLEKAREEGQIPRSRELTSILMLIAGLSILWGGGEWMGRKLGA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D S ++  + +L   A   V+P +   ++  I + ++    VL+ 
Sbjct: 60  LLADGLV-FNHSMVSDTSQMLRQIANLLQQAVLAVLPMMFGLVVVAIAAPMLLGGLVLSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++  +G+ ++ S  +    +K+ +K  LV  +  + +  ++  ML  ++ +
Sbjct: 119 KAIKFDLGKMNPIKGLAKLVSAQSAAELLKAVLKATLVSIVCGLYIWHHWAEMLRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    I+++L ++ +   D+ +    ++  L+MS Q+I+DE KQ  G+P
Sbjct: 179 PITALAGAMNMIAMCCILVVLGLSPMVGFDVFFQLFSYFKNLRMSHQDIRDEHKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHY++AL+Y + +  AP ++AKG   IA
Sbjct: 239 HVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVLAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  E+ IPI E P LAR+L++   I   IP   Y AVA+++  ++  +
Sbjct: 299 LRIRELGAENRIPILEAPPLARALYRHSEIGQHIPGTLYAAVAEVLAWVWQLR 351


>gi|54308128|ref|YP_129148.1| flagellar biosynthesis protein FlhB [Photobacterium profundum SS9]
 gi|46912554|emb|CAG19346.1| putative flagellar biosynthetic protein FlhB [Photobacterium
           profundum SS9]
          Length = 376

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D    +TE  + +K+E A  +G    S+E +  + ++   + L+ ++  G+    +
Sbjct: 1   MSDSD-GQERTEDATPRKLEQAREKGQVARSKELASVAVLVMGAVSLI-WYGEGLGKALA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++   + S ++ ++ D+S +  ++     S    +   L++  +  +           ++
Sbjct: 59  EIMTQMFSLSREEIYDLSRLFSIMLTAIWSVVFPLGLVLVVLFLAALIGAAGLGGVSFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ + + V  +KS +K++LV  +    +  +    L      
Sbjct: 119 EAAMPKLSKMNPMSGFKRMFGMQSWVELIKSILKVLLVAGVAAYLMYSSLNDFLLLSLEI 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S ++HA   + + +++I   +  +  +D+ +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPSNIFHALDILMQFILLICCSLLVIVAIDVPYQIWQHNEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +II NP H+++ALRY    + AP+++AKG +  A
Sbjct: 239 EVKGRIRMLQREMAQRRMMADVPQADVIIINPEHFSVALRYDPKLDSAPIVIAKGVDHTA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA +HNI I   P LAR+++    +   IP   + AVAQ++  I+  K
Sbjct: 299 LKIREIANKHNIDIVSAPPLARAIYHTTELEQHIPDGLFVAVAQVLAYIFQLK 351


>gi|330940692|gb|EGH43704.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 378

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLVFGSD-IALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|123442794|ref|YP_001006771.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332161312|ref|YP_004297889.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122089755|emb|CAL12608.1| flagellar biosynthetic protein FlhB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605230|emb|CBY26728.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665542|gb|ADZ42186.1| flagellar biosynthesis protein FlhB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860618|emb|CBX70915.1| flagellar biosynthetic protein flhB [Yersinia enterocolitica
           W22703]
          Length = 383

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  +K+E P++ K+E A  +G  P SRE +    + A L  L          + +
Sbjct: 1   MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILWVSGESMARQLAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + D   ++  +  L       +IP     ++  +   ++    + + 
Sbjct: 60  MIAQGL-HFDHGLISDDKQMLRQIGMLLRQTLIALIPIFAGLVIVAMAVPMLLGGVLFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR+S   G+KR++S   L   +K+ +K  LVG +  I L  N+  M+  ++A 
Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLMAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    ++++L +  +   D+ +       KL+M+KQEI+DE K   G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +T+  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|162210026|ref|YP_331480.2| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           1710b]
          Length = 405

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+  ++TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLDRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     + P L L  +  + + +     +++    
Sbjct: 67  TAF-SFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+EIK E +++ G+P +K
Sbjct: 186 ALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355


>gi|161523355|ref|YP_001578367.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC
           17616]
 gi|189351872|ref|YP_001947500.1| flagellar biosynthesis protein FlhB [Burkholderia multivorans ATCC
           17616]
 gi|160340784|gb|ABX13870.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans ATCC
           17616]
 gi|189335894|dbj|BAG44964.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
           17616]
          Length = 399

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A         +P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A   +    D   ++      SL     ++P L L     + + +     +++ 
Sbjct: 60  MLRGAFA-FDRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAALLAPMALGGWLISP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  +++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351


>gi|304404263|ref|ZP_07385925.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus
           YK9]
 gi|304347241|gb|EFM13073.1| flagellar biosynthetic protein FlhB [Paenibacillus curdlanolyticus
           YK9]
          Length = 369

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 179/347 (51%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE+ + KK ++A  +G    S+E      +L   +            + +    L 
Sbjct: 18  SQEKTESATPKKRQEAREKGQVAKSQELPGAFILLFVFMSFYMIGPYYKSRILAMFGDLF 77

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                  L  + +++ L T L      ++ P   + ++  +    +Q   +   + +K  
Sbjct: 78  EDWLTLDL-TMGNVMSLFTQLMYEMLMMLAPIFAIALLVALLGNYVQVGILFTGDPLKMK 136

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F ++S  +G K I+++  +V F+K+ +K++++G ++ ++L   +  ++   +     +L 
Sbjct: 137 FSKLSPIQGFKNIFAMRTVVEFIKNILKLVVIGLVVFMTLKSQWGRIIQLDTLPVEYVLG 196

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  K+ I I + +  L + D  +  +++   L+MSKQ+IKDE K++ GNP+IK R 
Sbjct: 197 FTGGIALKLGIEIGVILVVLALGDYFYKKYEYEKGLRMSKQDIKDEFKKTEGNPLIKGRI 256

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A +IITNPTH+A+AL+Y  ++ +APV++AKG + +A ++R+ 
Sbjct: 257 RERQRKMALQRMMQDVPKADVIITNPTHFAVALKYDASKMEAPVVLAKGMDHVALRIRET 316

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EH +   E   LAR+L+ +  I  +IP   ++AVA+++  +Y  K
Sbjct: 317 AKEHGVITMENKPLARALYDRSEIGDSIPSDLFQAVAEVLAYVYKLK 363


>gi|227820846|ref|YP_002824816.1| flagellar biosynthesis protein FlhB [Sinorhizobium fredii NGR234]
 gi|227339845|gb|ACP24063.1| flagellar biosynthetic protein FlhB [Sinorhizobium fredii NGR234]
          Length = 360

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 158/350 (45%), Positives = 242/350 (69%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++   D+KTEAPS KK+ DA  +GN P SRE + F+S LA  I+++FF S G  S   
Sbjct: 1   MSDDQDKDSKTEAPSEKKLSDAAEKGNVPFSREVTAFASTLAVYIFIVFFLSDGAASTAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +LE  +  V L++H+ L ++ LV+P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLETATDAVGLISHVVLKSAGLVLPVFVLLIIFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P+  RVS   G KRI+ +  LV F KS  KII+V  I+ + L  +YF  LD + ++
Sbjct: 121 DRIMPNMNRVSPIAGFKRIFGVPGLVEFAKSLFKIIVVSIIVVLVLWNDYFATLDLMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I       +++++ ++LL  A L ++D+ W+ H WYS+LKM+KQE+K+E+KQS G+P
Sbjct: 181 PVTIFATMISDLKQIVTVVLLATAVLAIVDLFWTRHHWYSELKMTKQEVKEELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT++I NPTHYA+ALRY++ E+DAPV+VA GQ+L+A
Sbjct: 241 IVKSRLRSMQRDRARKRMIASVPRATLVIANPTHYAVALRYVREESDAPVVVAMGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|160939623|ref|ZP_02086971.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437414|gb|EDP15178.1| hypothetical protein CLOBOL_04515 [Clostridium bolteae ATCC
           BAA-613]
          Length = 353

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 171/348 (49%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + K+ +D   +GN   S + +   S+L     L         S    +H+ 
Sbjct: 2   AAEEKTEKATPKRRQDERKKGNVFQSNDVAAVCSLLVLFHSLKALAPMMYESFGECMHLF 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            + A+   +        L     L   +  +P L + ++  +     Q     + + +K 
Sbjct: 62  FSYASSPDIFWQEGGKGLFMKAVLVFFKASLPLLFIGVLTAVIVTFFQTRMAFSWDVLKF 121

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F R+S  +G KR++S+ +++  +KS +KI ++G ++   L      +   +     S L
Sbjct: 122 KFDRISPLKGFKRMFSLRSVIELLKSLIKITVLGWVVWFFLKGRLTELTGLMEGTVASAL 181

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   TV  ++  + +    L  +D  + + ++   L+MSKQEIK+E KQ+ G+P IK +
Sbjct: 182 IYVGNTVVSLVDTVGIAFVFLGAVDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDPQIKGK 241

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+    A ++I NPTH+A+AL Y   +N APV++AKG + +A K+ +
Sbjct: 242 IREKQRQMASRRMMQNVPNADVVIRNPTHFAVALGYDSGKNRAPVVLAKGADHLALKIVE 301

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A    + I E+  LAR L+  V ++  IP  +Y+ VA+++  +Y  +
Sbjct: 302 VAEASGVYIMEDRPLARGLYDTVEVDMEIPEEYYQTVAKILAFVYKLQ 349


>gi|296133030|ref|YP_003640277.1| flagellar biosynthetic protein FlhB [Thermincola sp. JR]
 gi|296031608|gb|ADG82376.1| flagellar biosynthetic protein FlhB [Thermincola potens JR]
          Length = 368

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 175/347 (50%), Gaps = 1/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  ++KK + A  EG    S E +    +LA  I +  FF   +  ++     +  
Sbjct: 19  QEKTEKATAKKRQKARQEGQVLKSMEFNSAVVLLATFISIKLFFPYMLEQLSGFFREIYR 78

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               +     +     L   ++  S + V+P   + ++ G+ + L+Q   +     +KP+
Sbjct: 79  MWGSQDFVLNARTSHQLYFSTIKVSFMTVLPIAGIAVVSGVAANLLQSGFIFTTKPLKPN 138

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++   GIKR++ + +LV  +KS VK+ +VG I        +      +  N  +   
Sbjct: 139 ISALNPINGIKRMFGVRSLVELVKSLVKVAIVGYIAYTGYKSEFNKFPQLLDMNIRASSL 198

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +   I + +   +  D  + + ++   LKM+KQE+K+E+KQ+ G+P +K   
Sbjct: 199 FIGRLILNMAFKIAVCLLIFSGFDYWYQWWEYERSLKMTKQEVKEELKQTEGDPKVKAAI 258

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +     +MM+A  +A ++ITNPTHYA+AL+Y      AP +VAKGQ+ +A++++++
Sbjct: 259 RRKQQQMSVARMMQAVPKADVVITNPTHYAVALKYDADTMSAPEVVAKGQDYLAQRIKQV 318

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EH + + E   LA++L+  V I  +IP   Y+AVA+++  +Y  K
Sbjct: 319 AKEHGVVLVENKPLAQALYNAVEIGESIPAELYQAVAEVLAFVYKLK 365


>gi|221214213|ref|ZP_03587185.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1]
 gi|221165868|gb|EED98342.1| flagellar biosynthetic protein FlhB [Burkholderia multivorans CGD1]
          Length = 399

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAGPAGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A   +    D   ++      S+     ++P L L     + + +     +++ 
Sbjct: 60  MLRGAFA-FDRATAFDTHRMLSAAGSASVEGLAALLPILALTGAAALLAPMALGGWLISP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  +++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LDTALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351


>gi|2494575|sp|Q56886|FLHB_YEREN RecName: Full=Flagellar biosynthetic protein flhB
 gi|793892|emb|CAA88185.1| flhB [Yersinia enterocolitica]
          Length = 383

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  +K+E P++ K+E A  +G  P SRE +    + A L  L          + +
Sbjct: 1   MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILWVSGESMARQLAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + D   ++  +  L       +IP     ++  +   ++    + + 
Sbjct: 60  MIAQGL-HFDHGLISDDKQMLRQIGMLLRQTLIGLIPIFAGLVIVAMAVPMLLGGVLFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   KR+S   G+KR++S   L   +K+ +K  LVG +  I L  N+  M+  ++A 
Sbjct: 119 ESIKFDLKRMSPIAGLKRMFSSQALAELLKAILKATLVGWVTGIFLWHNWPDMMRLMAAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   +    ++++L +  +   D+ +       KL+M+KQEI+DE K   G+P
Sbjct: 179 PVAALGDALHLIIFCGLVVVLGLTPMVGFDVFFQITSHIKKLRMTKQEIRDEFKDQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +T+  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVHKADVIVTNPTHYAVALQYNETKMSAPKVLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 351


>gi|161723151|ref|YP_443664.2| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           E264]
          Length = 405

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     ++P L L  +  + + +     +++    
Sbjct: 67  TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355


>gi|330953765|gb|EGH54025.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae Cit 7]
          Length = 378

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALIVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLMVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|167582700|ref|ZP_02375574.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           TXDOH]
          Length = 405

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 179/350 (51%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   +TEA + K+ E A  EG    SRE + F+ + A          P    + + LH
Sbjct: 7   EDSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLH 66

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S  +    D + ++     LSL     ++P L L  +  + + +     +++    
Sbjct: 67  TAF-SFDRATAFDTNRMLSHAGILSLEGLYALVPVLALTGVAALAAPMALGGWLVSTKTF 125

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +  F+R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +   H+
Sbjct: 126 ELKFERLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHA 185

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L  A   +     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P +K
Sbjct: 186 ALADALHLIAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVK 245

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 246 GRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARI 305

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 306 RELAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 355


>gi|153834147|ref|ZP_01986814.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
 gi|148869517|gb|EDL68515.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
          Length = 376

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      S+ S
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    T+ ++ D + +  +           +   L+   +  +           + 
Sbjct: 60  IMSRLF-DLTRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQEIKDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVAIDIPFQIWQHADQLKMTKQEIKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|167040311|ref|YP_001663296.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514]
 gi|166854551|gb|ABY92960.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X514]
          Length = 360

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL 
Sbjct: 11  QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  + +P +LL  +  + S  +Q   V     +  
Sbjct: 71  TYSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAF 130

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV  +KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 131 KFERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA +M++
Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 310

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 311 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358


>gi|134300232|ref|YP_001113728.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens
           MI-1]
 gi|134052932|gb|ABO50903.1| flagellar biosynthetic protein FlhB [Desulfotomaculum reducens
           MI-1]
          Length = 354

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 187/349 (53%), Gaps = 2/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           +    KTE  + +++++A  +G  P S + +    +L   ++ L +    I  + +    
Sbjct: 3   EGSQEKTEQATPRRLQEARRKGQVPKSADLNGAILLLITGLFALLYKDNLITHMQTYFFT 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              +  +++ +D S++V +L    ++   +  P  +L M+  +G  L Q   +     +K
Sbjct: 63  YFNNFVKQQQQD-SYLVQILIDFMINVFVVFTPLFILLMVVALGVNLAQVGFLFAPEAIK 121

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P   +++   G+K ++S   +   +KS +KI +VG ++  ++      +L    + P ++
Sbjct: 122 PKLDKLNPINGLKNMFSGRAMFELVKSLLKITIVGWVVYAAVRGEMANLLAIFHSPPRTL 181

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L        KV++   +    + +LD+ +  + +  +++MSKQE+K+E KQ+ G+P IK 
Sbjct: 182 LNQVLTIALKVILWGAVVYLGIALLDLLYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
             +   R  + +   +   +AT+++TNPTHYA+AL+Y Q   DAPV+VAKG + +A+++R
Sbjct: 242 WLRRRQRQLLANLARKEVPQATVVVTNPTHYAVALKYEQP-MDAPVVVAKGTDHMARQIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA ++ +P+ E   +AR L+  V I  AIP   ++AVA+++  +Y  K
Sbjct: 301 EIARKNEVPVIENVEVARFLYANVEIGHAIPMEMFQAVAEILAMVYRMK 349


>gi|262273550|ref|ZP_06051364.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
 gi|262222528|gb|EEY73839.1| flagellar biosynthesis protein FlhB [Grimontia hollisae CIP 101886]
          Length = 375

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 104/352 (29%), Positives = 184/352 (52%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ A D KTE PS +KI  A  EGN P SRE      ++A  + LL  FS  I+    
Sbjct: 1   MSDSSAQD-KTERPSEQKIRKAREEGNLPRSRELVTALMMVASAL-LLSAFSSAIHHTIV 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +  +  +  +     +  LL   ++ A++ + P   L M+  IG+ L++    ++ 
Sbjct: 59  SVSEMTLNIDKDTIFSPDKMGELLWQSAILATQALAPLFALIMLVSIGANLLRGGWNIST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKRI+S N+LV  +KS +K+  +G  +   +      ++      
Sbjct: 119 KAMMPKLSKLNPLSGIKRIFSANSLVELIKSILKVTFIGGALYWLINHYLNEIIALQHTR 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +      +   L +  L +  + VL++ +S +++  KLKM+KQE+K+E K + G P
Sbjct: 179 LSAAIPAFLDLLWTGLFVYGLVLLFIAVLEMPYSSYEYIKKLKMTKQEVKEEHKNTEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   +    +    A +IITNPTHYA+AL+Y  ++ +AP ++AKG +  A
Sbjct: 239 EIKARIRQLQRQMSQRAFAKTVPTADVIITNPTHYAVALKYDLSKANAPFVIAKGVDQAA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++R+IA +H +P+ E P LAR+++        IP   Y AVA ++  ++  
Sbjct: 299 LQIRQIAQQHGLPVVEVPPLARAVYYSTNEWQEIPAQLYVAVAHVLNYVFQL 350


>gi|330964680|gb|EGH64940.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 369

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 186/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  EG    S+E +    +L     LL  F  GI  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRAEGQIARSKELTTLVVMLMGAGGLL-MFGAGIAQMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  + D S++   L    L A  +++P L+  +   +   ++    + + 
Sbjct: 60  ELMRDNFTISRETIMDQSYMGKALLSSGLHALVVMLPFLIAMLAAALVGPILLGGWLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++    +KR++S + LV  +KSF K +++  +  + L++    ++      
Sbjct: 120 KSLMPKFSRMNPAARLKRMFSPHALVELLKSFGKFLIILAVALVVLSKERNDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLLVVGWSSFWMACGLMFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EIKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|296103646|ref|YP_003613792.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058105|gb|ADF62843.1| flagellar biosynthetic protein FlhB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 381

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE +    KTE P+  + + A  EG  P SRE +    +LA    LL         +  
Sbjct: 1   MSEQNDS-EKTEDPTPHRKQKAREEGQVPRSRELTSLLMLLAGWGLLLVAGGWLAKQLLH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  L +  +  + D   ++     L   A   ++P +    +  + +  +     ++ 
Sbjct: 60  LLHNGL-TFDRLLVSDPQQMLHHAGSLLGMAFLALLPFVGGLFLTAVATPSLIGGLNMSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K + K+++   GIKR++S   +   +KS +K+ L G    + L  N    +  +   
Sbjct: 119 KALKFNVKKLNPISGIKRLFSAQMVSEMVKSILKVTLAGIGGGLFLWFNKGKFISLMYEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   +++I+L +  +   D+ +     + KL+MS +EIKDE K   G+P
Sbjct: 179 LRMALGDISALLMGCMLVIILSLIPMVAFDVVYQLWSNFKKLRMSLKEIKDEFKNQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK++ + + R   + +MM     A +++ NPTHY++AL+Y +    AP++VA G  LIA
Sbjct: 239 LIKSKVRQLQRQMAQQRMMSDVPTADVVVNNPTHYSVALKYQEGAMGAPMVVASGSGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E+ +P+ E P LAR+L++     + +P   Y AVA+++  +Y  K
Sbjct: 299 LRIRELAEENRVPMLEAPPLARALYRHCDPGTPVPAELYSAVAEVLAWVYGLK 351


>gi|118133499|gb|ABK60543.1| flagellar biosynthetic protein FlhB [Clostridium novyi NT]
          Length = 575

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 101/348 (29%), Positives = 181/348 (52%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G    S+E +    +L   I LL        S+  D+   
Sbjct: 226 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 285

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +     L +   +  ++  ++   + + +P +L  M+ G+G+ L+Q   + +   +KP
Sbjct: 286 FTNYLNMNL-NSGSLQSIIVTIAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 344

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G K+I+S+  ++  +K    I ++G +    L  N+  +L   S     I+
Sbjct: 345 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 404

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + L +  + ++D  +   Q+   ++MSKQEIK+E KQ  G+P IK +
Sbjct: 405 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 464

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM++   A+++ITNPTH A+AL+Y   ++ AP LVAKG + IA K+++
Sbjct: 465 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 524

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+ +PI E   LAR +FK+V + S IP   Y+AVA+++  +Y  K
Sbjct: 525 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLK 572


>gi|20807870|ref|NP_623041.1| flagellar biosynthesis/type III secretory pathway protein
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516434|gb|AAM24645.1| Flagellar biosynthesis/type III secretory pathway protein
           [Thermoanaerobacter tengcongensis MB4]
          Length = 362

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 180/348 (51%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ ++A  +G    SRE +    ++   + +  F    +  V + L  LL 
Sbjct: 13  GEKTEPATPKRRQEARKKGQVFQSREITSALVVVTGFLMINLFLQSFLGRVGNLLKFLLI 72

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + + + I  +  ++      + +P +L      + S   Q   V     +  
Sbjct: 73  TYSGANDDVFNTAGIWKIFYYVVNQIVLISVPVILAIFAVSLISTYFQVGFVFTAEPLTL 132

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV  +KS  K++++  I+   L   Y  +   +  +   +L
Sbjct: 133 KFERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLL 192

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +    +  + I I + +  L V+D  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 193 RYTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAE 252

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH+A+AL Y    NDAPV+VAKG++L+A K+++
Sbjct: 253 IRKKQRQISTRRMMQDLKKADVVITNPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKE 312

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + +IPI E   LA++L+    +   IPP  Y+AVA+++  +Y  +
Sbjct: 313 EAEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVYSLR 360


>gi|172059259|ref|YP_001806911.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria MC40-6]
 gi|171991776|gb|ACB62695.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MC40-6]
          Length = 399

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A         +P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A   +    D   ++      S+     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLGMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 FGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351


>gi|226939714|ref|YP_002794787.1| FlhB1 [Laribacter hongkongensis HLHK9]
 gi|226714640|gb|ACO73778.1| FlhB1 [Laribacter hongkongensis HLHK9]
          Length = 389

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TE  + ++ E A  EG  P SRE + F+  +  +  L+ +    +Y    
Sbjct: 1   MAE-DSDLERTEEATPRRREQAREEGQVPRSRELATFTVTMTGVAMLVAYGG-VLYQQLK 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + T+  L+        L          ++P L +  +  + +  +     L+ 
Sbjct: 59  ELFARTLTFTRATLDAEDAAQLALRGGLTDGLVSILPILGVLFVLALVTPALIGGWNLSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P F +++   GIKRI+S+   +   K+ +K +L+G + T  +      ++     +
Sbjct: 119 KAVEPKFSKINPLSGIKRIFSVQGAIEGAKAILKSLLIGGVATWVIWNERAELVSLTRLS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A       L+++   +  L ++D+ +   Q+   L+M+K+++K E+K+S G+P
Sbjct: 179 LDQALARAVDLTLHTLLIVAGAMVLLVLIDVPFQLWQYSKNLRMTKEDVKKEMKESEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   R +MM     A+++ITNPTHYA+ALRY      AP ++AKG   +A
Sbjct: 239 EVKGRIRQLQREAARRRMMSDVPNASVVITNPTHYAVALRYE-DGMAAPKVIAKGSMKVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++ ++A E+ + I   P  AR+L+    I   IP   Y A AQ++  ++  +
Sbjct: 298 ERIIELARENRVTILRAPPFARALYFNSEIGDDIPAALYSAAAQVLAYVFQLR 350


>gi|253681513|ref|ZP_04862310.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum D str. 1873]
 gi|253561225|gb|EES90677.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum D str. 1873]
          Length = 610

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 182/348 (52%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G  P S+E +    +L   I LL        S   D+   
Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVPKSKEVNSAIILLTSTIILLTLGEYVANSFKKDIIEF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +    +L + S ++ ++  +      + +P ++  M+ GIG+ L+Q   + +   +KP
Sbjct: 321 FTNYLNIEL-NSSSLISIIVTVLWRFMIVFLPVVVPLMIMGIGANLLQTGYINSKEPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G K+++S+  ++  +K    I ++G      L  N+  +L   +     I+
Sbjct: 380 QLSKINPISGFKKMFSMRTVMELLKDIAVITIIGFAGYGFLKSNFKKVLSMTNLRFPVII 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + L +  + + D  +   Q+   ++MSKQE+K+E KQ  G+P IK +
Sbjct: 440 TSFLKLTTNIFFRVSLIMFAIALTDFIYQKFQFKKDMRMSKQEVKEEFKQMEGDPQIKGK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+    A+++ITNPTH A+AL+Y   +++AP+LVAKG + IA K+++
Sbjct: 500 IKQKQREMAMGRMMQNVPDASVVITNPTHIAVALKYEDGQDNAPMLVAKGSDYIAIKIKQ 559

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+++PI E   LAR +FK+V I + IP   Y+AVA+++  +Y  K
Sbjct: 560 IAKENDVPIIENKPLARLIFKEVEIENEIPSDMYQAVAEILALVYKLK 607


>gi|167037650|ref|YP_001665228.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166856484|gb|ABY94892.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 360

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL 
Sbjct: 11  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 70

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 71  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 130

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 131 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 190

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 191 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 250

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 251 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 310

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +  IPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 311 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 358


>gi|162139705|ref|YP_877991.2| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           novyi NT]
          Length = 610

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 101/348 (29%), Positives = 181/348 (52%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  +  K+ +A  +G    S+E +    +L   I LL        S+  D+   
Sbjct: 261 ASDDKTEEATPHKLSEARKKGQVAKSKEVNSAIILLTSTIILLTLGEYVANSLKKDIIEF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +     L +   +  ++  ++   + + +P +L  M+ G+G+ L+Q   + +   +KP
Sbjct: 321 FTNYLNMNL-NSGSLQSIIVTIAWRFAVVFLPVVLPLMIMGVGANLLQTGYINSKETLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   G K+I+S+  ++  +K    I ++G +    L  N+  +L   S     I+
Sbjct: 380 QLSKINPINGFKKIFSMRTVMELLKDIAVIFVIGYVGYGFLKSNFNKVLSMTSLRFPVII 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + L +  + ++D  +   Q+   ++MSKQEIK+E KQ  G+P IK +
Sbjct: 440 TSFLKLTTTIFFRVSLVMIAIALIDFMYQKFQFKKDMRMSKQEIKEEFKQMEGDPQIKGK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM++   A+++ITNPTH A+AL+Y   ++ AP LVAKG + IA K+++
Sbjct: 500 IKQKQREMAMGRMMQSVPDASVVITNPTHIAVALKYEDGKDSAPTLVAKGSDYIAIKIKE 559

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+ +PI E   LAR +FK+V + S IP   Y+AVA+++  +Y  K
Sbjct: 560 IAKENEVPIIENKPLARLIFKEVELESEIPSEMYQAVAEILALVYKLK 607


>gi|115350237|ref|YP_772076.1| flagellar biosynthesis protein FlhB [Burkholderia ambifaria AMMD]
 gi|115280225|gb|ABI85742.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria AMMD]
          Length = 399

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++  ++TEA + ++ E A  EG    SRE + F+ + A         +P    + +
Sbjct: 1   MAD-ESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A   +    D   ++      S+     ++P L L  +  + + +     +++ 
Sbjct: 60  MLRGAFA-FDRATAFDTHRMLSAAGSASIEGLAALLPILALTGLAALLAPMALGGWLISQ 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPISGLGRIFSIQGPIQLAMSLAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +  A   V       +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LGSAVADAMHLVAVCCGTTVAGMLVVAALDVPYQIWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM A  +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+  V I   IP   Y AVA+++  +Y  +
Sbjct: 299 ARIRELAAEHNVPLLEAPPLARALYHNVEIEREIPGSLYSAVAEVLAWVYQLR 351


>gi|167838295|ref|ZP_02465154.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           MSMB43]
          Length = 401

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+  ++TEA + K+ E A  EG    SRE + F+ +L+   Y  +  S  I     
Sbjct: 1   MAE-DSDLDRTEAATPKRREKAREEGQVARSRELASFA-LLSAGFYGAWMLSGPIGEHLR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S  +    D + ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 59  TMMRAAFSFDRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMALGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R++   G+ RI+SI   +    S  K ++VG I  I++  +   +L   +  
Sbjct: 119 KTFELKFDRLNPVTGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LDAALAGALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPT +A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTRFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH +P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIRELAAEHRVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351


>gi|148269163|ref|YP_001243623.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1]
 gi|281411461|ref|YP_003345540.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila
           RKU-10]
 gi|147734707|gb|ABQ46047.1| flagellar biosynthetic protein FlhB [Thermotoga petrophila RKU-1]
 gi|281372564|gb|ADA66126.1| flagellar biosynthetic protein FlhB [Thermotoga naphthophila
           RKU-10]
          Length = 374

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 186/348 (53%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   +TE  + +K      EG AP+SRE ++  + L   + L  F   G+  +T D+   
Sbjct: 29  AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+       E+   ++    +       ++   ++  M+ G+    +Q   +     +KP
Sbjct: 89  LS------FEETEDLLVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKALKP 142

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++  EG KR++S+ +LV  +KS +K+ +VG ++   L   +  M+     N +   
Sbjct: 143 DLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVNDAF 202

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            + +    ++ +   + +  L V D  +   ++   ++M+KQE+KDE+K+  GNP IK R
Sbjct: 203 ANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIKRR 262

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ +    +R +MME   +A ++ITNPTH+A+AL+Y     +APV+VAKG + +A K+ +
Sbjct: 263 QRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKIIE 322

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+++P+   PSLAR+L+ +  I   IP  FY+ VA+++  +Y KK
Sbjct: 323 IAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370


>gi|302343745|ref|YP_003808274.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM
           2075]
 gi|301640358|gb|ADK85680.1| flagellar biosynthetic protein FlhB [Desulfarculus baarsii DSM
           2075]
          Length = 364

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 189/354 (53%), Gaps = 3/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++N A   KTE P+ ++   A  +G    S+E      + A L+ L + F   +Y  ++
Sbjct: 1   MADNTA-QEKTEKPTPRRRSKAREKGQVAKSQELGSIGVLFAGLMCL-YAFGGFVYDQSA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   + S        ++ +  L   L     R + P +L  ++ G+   + Q   +L  
Sbjct: 59  TMMTHILSRAAETPVSLAQVHNLSIDLMGHFLRTLAPFMLAVVLAGVAVNVAQTGFMLAT 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SA 179
           + ++P  K+++  EG+K+  S+  LV  +K+  KI +VG +  + L +      +     
Sbjct: 119 SRLRPDLKKINPLEGLKKFVSMRMLVEAIKNTGKICVVGLVAYLVLADELPNFPNIGKLG 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              ++L +      ++ +  L  +  L +LD  +  +Q+   LKMSKQEIKDE KQ+ G+
Sbjct: 179 GLTAMLIYIADVCLRIFLWSLAAMFILAILDYAYQKYQFEKGLKMSKQEIKDEFKQTEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K+R + + R R   +MM A  +A ++ITNPTH A+A+ Y   + DAP +VAKGQN I
Sbjct: 239 PHVKSRIRQLQRERAMKRMMAAVPQADVVITNPTHLAVAIFYQAGQMDAPEVVAKGQNKI 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A++++ +A E+N+PI E+  LA++L+K V +   IP   + AVA ++  +Y +K
Sbjct: 299 AERIKALAQENNVPIIEDKPLAQALYKSVEVGQRIPFELFGAVAAILAHVYREK 352


>gi|300914395|ref|ZP_07131711.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561]
 gi|307724369|ref|YP_003904120.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513]
 gi|300889330|gb|EFK84476.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X561]
 gi|307581430|gb|ADN54829.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter sp. X513]
          Length = 363

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL 
Sbjct: 14  QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  + +P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIAMPIILLIFVVSLASTYLQVGFVFTAEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV  +KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELVKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA +M++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|297569688|ref|YP_003691032.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925603|gb|ADH86413.1| flagellar biosynthetic protein FlhB [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 353

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +   KTE P+ +++ +A  +G+   S E    + +LA +I L F        VT 
Sbjct: 1   MAEEQSGQEKTEKPTERRLLEARKKGDVAKSMEVPSAAVLLAGVIVLYFTGERMFNQVTG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +     L    ++  +     +S   ++ P +L   +  + +  +Q   +   
Sbjct: 61  MMQFYLGNLDTLNLS-PGNMPAISRQALISIFDVLWPLMLTVFIVALLANYMQIGVLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  +++   +G  R++S   L NF KS  K+ +VG +    +      +L  +   
Sbjct: 120 EKMKPKLEKIDPLKGFGRLFSKQALANFFKSMAKMGVVGYVAYSEVKRALNEILPLMDKA 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P+ I+     T   + +   L IA +  +D  +   Q+  K+KM+KQ++KDE KQ+ G+P
Sbjct: 180 PYPIVMFMTETAFWIFLKCALAIAIIAAIDYAFQRWQFMEKMKMTKQDMKDEGKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R ++I     R +MM    +A +++TNPT  A+A++Y      AP ++AKG  ++A
Sbjct: 240 HVKGRIRAIQTEMARKRMMAEVPKADVVVTNPTRLAIAIKYDALTMPAPKVLAKGAGVVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH +PI E+  LA++L++ V I+  IP   ++AVA+++  +Y+ +
Sbjct: 300 GKIREIAQEHEVPIVEDKPLAQALYQTVEIDQTIPENLFQAVAEVLAYVYNLR 352


>gi|114570480|ref|YP_757160.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10]
 gi|114340942|gb|ABI66222.1| flagellar biosynthetic protein FlhB [Maricaulis maris MCS10]
          Length = 363

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 183/352 (51%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +    KTE P+ ++++DA  +G+   S+E   +  + A L  L F F     ++  
Sbjct: 1   MAEGEDDSQKTEEPTQRRLDDARKKGDVAKSQEIPGWFVLAAGLALLSFIFPMMSRALAG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L V         + +   ++ L+  ++     +V   + L  + G   + +Q+  +   
Sbjct: 61  NLEVFFEQPHDFAI-NPGAMMGLMQAVAWQVVAIVGLPIGLLAVAGFAGHYVQQGMLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++  EG KR +    L NF+K   K+ LV     + +      +    + +
Sbjct: 120 EKIQPKLSKLNPIEGFKRNFGPQGLANFLKGVGKMALVAVAAFLVIYPKREILAGLPALD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S+L        ++L+  L   A +  LD  +    +  + +MS++EIKDE+KQS G+P
Sbjct: 180 IGSLLSLVRQGAIELLLAALTVYAVIAGLDYIFQRQSFMKRNRMSRREIKDEMKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ + + + + R + +MM     AT+++TNPTHYA+AL Y+Q E  APV VAKG + +A
Sbjct: 240 LVRAKLRQLRQERSQRRMMTKVPDATVVVTNPTHYAIALHYVQGETPAPVCVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++R++A EH++PI E+P LAR+L     ++  IP   ++AVA+++  +   
Sbjct: 300 LRIRELAEEHSVPIVEDPPLARALHATADLDEEIPTEHFQAVAKVVGYVLSL 351


>gi|119775419|ref|YP_928159.1| flagellar biosynthesis protein FlhB [Shewanella amazonensis SB2B]
 gi|119767919|gb|ABM00490.1| flagellar biosynthetic protein FlhB [Shewanella amazonensis SB2B]
          Length = 377

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 176/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END    +TE P+ +++E A  +G    S+E    + +LA  +  L    P +     
Sbjct: 1   MAENDTSQERTEEPTGRRLEQAREKGQVARSKELGTAAVLLAAAVGFLML-GPSLGKAMH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  +    ++ ++ D + ++ +   ++      V+  +L+         ++    + + 
Sbjct: 60  NVMTMTMVQSREQVFDTNSMLNIWIPIAKELGLPVLGLVLVLAALAFAGNIVLGGIIFSS 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N V P   ++S   G KR++ +  L+   K   K  +V       L+  +  ++   + +
Sbjct: 120 NGVLPKASKMSPLAGFKRMFGLQALMELGKGLAKFSVVAVAAYFLLSFYFPEIIQISAEH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S ++HA   +  + +++   +  + V+D+ +       +LKM+KQE+KDE K + G P
Sbjct: 180 LPSNVFHALDLLTWMFLLLCSSMLIIAVIDVPFQIWNHKKQLKMTKQEVKDEYKDTEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     +MM    +A +I+ NP H+A+AL+Y    + AP ++AKG + +A
Sbjct: 240 EVKGRIRQMQREIAMRRMMAEVPKADVIVVNPEHFAVALKYDAKRSPAPFVLAKGVDAVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+++    +N  +P   + AVAQ++  ++  +
Sbjct: 300 FKIREIAREYDIAIVSAPPLARAIYHTTKLNQQVPEGLFTAVAQVLAYVFQLR 352


>gi|225375342|ref|ZP_03752563.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM
           16841]
 gi|225212831|gb|EEG95185.1| hypothetical protein ROSEINA2194_00967 [Roseburia inulinivorans DSM
           16841]
          Length = 367

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 174/357 (48%), Gaps = 5/357 (1%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           +++     KTE  ++KK+ +A  +G    S+E +    ++   + L  F S     + + 
Sbjct: 9   AKDGPGGEKTEPATAKKLREAREDGKVVKSKELTAAFDLIILFLVLKIFVSFVGNRLMNS 68

Query: 62  LHVLLASATQRKLEDISHI-----VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
              +         E+   +       L++   +    + +P      +      +IQ   
Sbjct: 69  FVDIYGRIPDIVRENAVDVTEKSVAALMSDALIQILIVCVPFFAFGFVVTALISVIQVGW 128

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
            +    ++P F + +   G KRI+S +++   +KS +KI ++  +   S+  +   +   
Sbjct: 129 KVTGKPLQPKFDKFNPINGFKRIFSKDSIFELVKSILKIFVIVYVAYTSIRGHAQDIFIL 188

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                   +      +    + I L    + + D  +  +++   +KM+KQE+KDE K +
Sbjct: 189 YEIPLMQAIMLCGTVIINAGLKISLVYLVIGLADFIYQKYRFNEDMKMTKQEVKDEFKNT 248

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP IK RQ+   R   R +MM+   +A ++ITNPTH+A+A++Y    + APV++AKG+
Sbjct: 249 EGNPEIKGRQRQRMREASRRRMMQDVPKADVVITNPTHFAVAIKYDAETSKAPVVLAKGE 308

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A+K+++ A EH+I I E   LAR L+  V I   IPP  Y+AVA+++  +Y+ +
Sbjct: 309 DYLAQKIKEAAREHHIEIVENKPLARMLYANVDIGQEIPPELYQAVAEILAMVYNMR 365


>gi|254491439|ref|ZP_05104618.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxidans
           DMS010]
 gi|224462917|gb|EEF79187.1| flagellar biosynthetic protein FlhB [Methylophaga thiooxydans
           DMS010]
          Length = 377

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  A   KTE P++K++++A N+G  P SRE +    ++A  + LLF     I S+  
Sbjct: 1   MAEQSA-QEKTEEPTAKRLDEARNKGQVPRSRELTTVMVLIASAVALLFMGKNIIASMAQ 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            ++    S T+++L D   ++    +   + +  +   L + ++  + +  +      + 
Sbjct: 60  VMNKSF-SFTRKELFDPMAMIHHFIYTIETIAFDLSMFLGVTVLAALAAPALIGGWNFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +R+   +G+KRI+    L+   K+  K ILVG I T  L      +L      
Sbjct: 119 QAMAPKGERMDPLKGLKRIFGPQGLIELAKALGKFILVGVISTAILWSIRDQLLTLGRQE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +  +    +    V + I   +  + ++D+ +       +L+M+KQE+KDE+K++ GNP
Sbjct: 179 VNVAMADLGYLTMWVFLAICASLILIALIDVPFQIWNHNRQLRMTKQEVKDEMKETDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MM+    A ++ITNPTHYA+ALRY QT+  APV+VAKG + I+
Sbjct: 239 EVKGRIRRMQVELSQQRMMQDIPSADVVITNPTHYAVALRYDQTKTGAPVVVAKGADFIS 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R +A  +++PI   P L R+++    I   IP   Y AVAQ++  ++  +
Sbjct: 299 QQIRLVAEHNDVPILSAPPLTRAVYYSTEIGDEIPSGLYIAVAQVLAFVFQLR 351


>gi|330961236|gb|EGH61496.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 378

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 184/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGSGGLLIFGSD-IAEMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     + T+  L D S++   L    L A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ALMRDNFTITRETLMDQSYMGKALLSSGLHALVVVLPFLIAMLLAALVGPILLGGWLFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR+++ + LV  +KS  K +++  +    L      ++      
Sbjct: 120 KPLMPKFSRMNPAAGLKRMFAPSALVELLKSLGKFLIILAVALAVLNSERKDLIAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +A +  +D+ +  +Q + KL M+KQE++DE K S GNP
Sbjct: 180 LEQAMIHSLIVVGWSSFWMACGLAFIAAVDVPFMLYQAHKKLLMTKQEVRDEHKNSDGNP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGSDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   + I I E  +LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|256750759|ref|ZP_05491644.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750342|gb|EEU63361.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 363

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 107/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL 
Sbjct: 14  QEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KFERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA +M++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRMKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IP   Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPSELYQAVAEVLAYVYSLK 361


>gi|119503678|ref|ZP_01625761.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2080]
 gi|119460740|gb|EAW41832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2080]
          Length = 384

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      +TE P++K+++ A  +G    SRE +    +L C + L +          +
Sbjct: 1   MAEEQTGQERTEEPTAKRLQQAREKGQVARSRELNTLLMLLPCAVAL-WLTGEFAMDAVT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +     ++  S +   L    +S   +++P L L +   +    +    + +L
Sbjct: 60  RLFTGALTPPSEAMKVTSEVAPFLGATLMSGLEMIVPFLALTVFVALLGPSVMGGLIFSL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++   +G  RI+S  +L+  +KS +K  LV  +  + L      ++  IS  
Sbjct: 120 KSMSPGLDKIDPIKGFGRIFSRKSLLELVKSLLKFFLVSGVAVLVLLSFEREVMGLISLP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A   +   LI +   +  +  +D+ +       KL+M+KQE+KDE+K++ GNP
Sbjct: 180 VGEGIAQAGRMIMLTLIFLSASLILVVAIDVPFQLWDHTRKLRMTKQEVKDEMKETDGNP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +   R     +M+     A ++ITNPTH+++AL+Y Q  N AP ++AKG + +A
Sbjct: 240 EMKGKIRQKQREIADRRMLADVPTADVVITNPTHFSVALKYDQEGNTAPRVLAKGADHMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R IA  H+I I+EEP LAR+LF        IP   + AVA+++  ++H +
Sbjct: 300 MQIRHIARAHDIVIYEEPPLARALFASTEAGDEIPGNLFLAVARVLAYVFHLR 352


>gi|320116065|ref|YP_004186224.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|319929156|gb|ADV79841.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 363

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + +     P +  + +    LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLAVNILTMPSLEKMMALTKYLLY 73

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  +++P +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIMPIILLIFVVSLASTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  EG KRI+S   LV   KS  K+ ++  I+   L   Y  +   +  +   IL
Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVAVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYETSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +  IPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLTIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|269138573|ref|YP_003295273.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202]
 gi|267984233|gb|ACY84062.1| flagellar biosynthetic protein [Edwardsiella tarda EIB202]
 gi|304558582|gb|ADM41246.1| Flagellar biosynthesis protein FlhB [Edwardsiella tarda FL6-60]
          Length = 440

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 104/350 (29%), Positives = 174/350 (49%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++   KTE P+  +IE A  +G  P SRE +    +   L  LL        ++   + 
Sbjct: 55  EESDLEKTEDPTPHRIEKAREKGQIPRSRELTSILMLATGLAILLLGGEYLARALAVMIA 114

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       L +   ++  L  L   A   ++P LL  M+ G  + ++    + + + +
Sbjct: 115 QGL-HFDHLLLSNDRQMLIQLGMLLQQAVAALMPVLLGLMLVGWCAPMLIGGFLFSPSSI 173

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K    R++   G KR++S   L   +K  +K  LVG +    L   +  ML  I+     
Sbjct: 174 KCDLNRLNPLSGFKRMFSSQVLAELLKGILKATLVGWVCGWFLLHYWPRMLRLITEPTLD 233

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            +  A   V    ++++L +  +   D+ +      SKL+M+KQEIKDE K+  G+P +K
Sbjct: 234 AMGDALHLVGMCGLLVVLGLLPMVGFDVFYQVWSNLSKLRMTKQEIKDEFKEQEGDPHVK 293

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   IA+++
Sbjct: 294 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGEIAQRI 353

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +  EH IP  E P LAR+L++   I  AIP   Y AVA+++  +Y  K
Sbjct: 354 KALGAEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 403


>gi|15643671|ref|NP_228717.1| flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8]
 gi|4981445|gb|AAD35990.1|AE001755_13 flagellar biosynthesis protein FlhB [Thermotoga maritima MSB8]
          Length = 374

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 188/348 (54%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   +TE  + +K      EG AP+SRE ++  + L   + L  F   G+  +T D+ V 
Sbjct: 29  AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQVF 88

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+       E+   ++    ++      +V   ++  M+ G+    +Q   +     +KP
Sbjct: 89  LS------FEETEDLLMNAVNIFKDVLLIVGAFVVFSMVAGVMIGALQTRFLFAPKALKP 142

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++  EG KR++S+ +LV  +KS +K+ +VG ++   L   +  M+     + +   
Sbjct: 143 DLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMSVNDAF 202

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            + +    ++ +   + +  L V D  +   ++   ++M+KQE+KDE+K+  GNP IK R
Sbjct: 203 ANFWDITSEITLKSGMILLALAVFDYFYQRWEFEKSIRMTKQEVKDELKEVEGNPEIKRR 262

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ +    +R +M+E   +A ++ITNPTH+A+AL+Y     +APV+VAKG + +A K+ +
Sbjct: 263 QRQMMYDILRRRMLEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLAFKIIE 322

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+++P+   PSLAR+L+ +  I   IP  FY+ VA+++  +Y KK
Sbjct: 323 IAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYAKK 370


>gi|87119470|ref|ZP_01075367.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121]
 gi|86164946|gb|EAQ66214.1| flagellar biosynthetic protein FlhB [Marinomonas sp. MED121]
          Length = 380

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 110/353 (31%), Positives = 181/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE  SSKK+++A N+GN P S++ S    +L     L    S     + S
Sbjct: 1   MAENEDGAEKTEDASSKKLDEARNKGNLPRSKDLSSALLLLIAAASLYATGSLLAQDM-S 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++       ++  + D + +V  L+  S+S    ++  +++  + GI   +       + 
Sbjct: 60  NVFQFNFVLSRADMFDTAKMVIHLSDSSISMMDSLLVMMIVLAIAGIVGSVALGGFNFSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++S+N+LV  +KS  K+ LV  +    L      ML     +
Sbjct: 120 EPLIPKLSKMNPISGIKRMFSVNSLVELLKSIAKVSLVLVVAFFVLKIYLPEMLLVPFQS 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L HA   V    I + L +  +  +D+ +       KLKM+KQE KDE K + G+P
Sbjct: 180 LELALGHAINVVIWAFIYVSLAVLLIAAVDVPYQAWSHKDKLKMTKQETKDEYKNAEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R     +MME    A +IITNPTH+++AL+Y      AP L+AKG + +A
Sbjct: 240 QIKARIRQAQRQASMRRMMEDVPNADVIITNPTHFSVALKYEAGVKGAPKLLAKGNDFVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I   HNIP+ + P+LARS++    I   IP   +++VAQ++  +Y  K
Sbjct: 300 LKIREIGTFHNIPVVQSPALARSIYHYTEIGEEIPTGLFQSVAQILAYVYQLK 352


>gi|269961633|ref|ZP_06175995.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3]
 gi|269833674|gb|EEZ87771.1| Flagellar biosynthetic protein flhB [Vibrio harveyi 1DA3]
          Length = 376

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      S+ S
Sbjct: 1   MAESD-GQERTEEATPRRLQQAREKGQVARSKELASASVLIVGAIALMWFGESLARSLFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L     + ++ D + +  +           +   L+   +  +           + 
Sbjct: 60  IMSRLF-DLKRDEIFDTAKLFDIAFGAMTDLLFPLFLILITLFVAAMIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K+ LV  +    +  +   ++      
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVALVTGMAIYLIQASQADLIQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  LDI +   Q   +LKM+KQEIKDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFILLISCSLLIVVALDIPFQIWQHADQLKMTKQEIKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPEHFSVALRYKQKTDRAPVVIAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 MKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAFVFQLK 351


>gi|150395473|ref|YP_001325940.1| flagellar biosynthesis protein FlhB [Sinorhizobium medicae WSM419]
 gi|150026988|gb|ABR59105.1| flagellar biosynthetic protein FlhB [Sinorhizobium medicae WSM419]
          Length = 360

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 155/350 (44%), Positives = 245/350 (70%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   D+KTEAPS KKI DA ++GN P SRE + F+S LA  I+++FF + G  +V  
Sbjct: 1   MADDQDKDSKTEAPSEKKISDATDKGNVPFSREVTAFASTLAIYIFVVFFLADGAANVAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +       +L+  +  V L++H+ L ++ L++P  +L ++FG+GS + Q +P   L
Sbjct: 61  ALKDIFEQPEAWRLDTATDAVALISHVVLKSATLLMPIFILLILFGVGSSIFQNLPRPVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G KRIY +  LV F KS  K+I+V  ++ + L  +YF  LD + ++
Sbjct: 121 DRIQPKWNRVSPVAGFKRIYGVPGLVEFGKSLFKVIVVSIVVVLVLWNDYFATLDMMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       +++++I++L   ATL ++D+ W+ H WY++LKM+KQE+KDE+KQS G+P
Sbjct: 181 PVMIFTTMTSDLKQIIIVVLFATATLAIVDLFWTRHHWYTELKMTKQEVKDELKQSQGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+ R R R +M+ +  RAT+II NPTHYA+ALRY++ E+DAPV+VA G++L+A
Sbjct: 241 IVKSRLRSLQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA ++ IP+FE+P LARS+F QV ++S IPPVFYKAVA+LI+++Y
Sbjct: 301 LKIREIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350


>gi|253998503|ref|YP_003050566.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4]
 gi|253985182|gb|ACT50039.1| flagellar biosynthetic protein FlhB [Methylovorus sp. SIP3-4]
          Length = 384

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  + K++E A  EGN P SRE    + +LA  + +    S    ++  
Sbjct: 1   MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    +    D + ++  ++    S      P   L  +  I +  +     ++ 
Sbjct: 60  TMGGSL-HFERALAYDSNLLLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLIGGWNVSN 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F R++   G+  + S N LV  +K+  K ILVG++  + +  +  T+L      
Sbjct: 119 QAFVPKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDTILSLALLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ +      + K    I+  +  +  +D+ +    + + LKM+K+E+K E K+S GNP
Sbjct: 179 LHTSIAEVEDMLLKSFFFIVGALVLIAAIDVPYQLTTYANNLKMTKEEVKQESKESEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   R +MM    +A ++ITNPTHYA+A++Y +    APV++AKG + +A
Sbjct: 239 QIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELGMRAPVVIAKGADAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH I   E P LAR+L+    +   IP   Y AVA++I  ++  +
Sbjct: 299 LKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEIIAYVFQMR 351


>gi|170287825|ref|YP_001738063.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2]
 gi|170175328|gb|ACB08380.1| flagellar biosynthetic protein FlhB [Thermotoga sp. RQ2]
          Length = 374

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 186/348 (53%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   +TE  + +K      EG AP+SRE ++  + L   + L  F   G+  +T D+   
Sbjct: 29  AEAERTERATPRKRRRVREEGRAPVSRELNMAVTFLVFALALKIFGYQGVERITEDVQAF 88

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+       E+   ++    +       ++   ++  M+ G+    +Q   +     +KP
Sbjct: 89  LS------FEETEDLLVNAVNTFKDVLLIIGAFVVFSMVAGVMIGALQTRFLFAPKALKP 142

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++  EG KR++S+ +LV  +KS +K+ +VG ++   L   +  M+     N +   
Sbjct: 143 DLNRINPIEGFKRLFSLRSLVELLKSVLKVAIVGIVVYQVLKNRWDEMILLTEMNVNDAF 202

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            + +    ++ +   + +  L V D  +   ++   ++M+KQE+KDE+K+  GNP IK R
Sbjct: 203 ANFWDIASEITLKSGMVLLALAVFDYFYQRWEFEKSIRMTKQEMKDELKEVEGNPEIKRR 262

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ +    +R +MME   +A ++ITNPTH+A+AL+Y     +APV+VAKG + +A K+ +
Sbjct: 263 QRQMMYDILRRRMMEEVPKADVVITNPTHFAVALKYDPDTMNAPVVVAKGVDHLALKIIE 322

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+++P+   PSLAR+L+ +  I   IP  FY+ VA+++  +Y KK
Sbjct: 323 IAKENDVPVLRNPSLARALYYKTEIGEEIPVEFYRIVAEVLVYVYTKK 370


>gi|254478867|ref|ZP_05092231.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035180|gb|EEB75890.1| flagellar biosynthetic protein FlhB [Carboxydibrachium pacificum
           DSM 12653]
          Length = 360

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 179/348 (51%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ ++A  +G    SRE +    I+   + +  F    +  V + L  LL 
Sbjct: 11  GEKTEPATPKRRQEARKKGQVFQSREITSALVIVTGFLMIHLFLQSFLGRVGNLLKFLLI 70

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + + + I  +  ++      + +P +L      + S   Q   V     +  
Sbjct: 71  TYSGANDDVFNTAGIWKIFYYMVNQVVLISVPIMLAIFAVSLISTYFQVGFVFTAEPLTL 130

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R++  EG KRI+S   LV  +KS  K++++  I+   L   Y  +   +  +   +L
Sbjct: 131 KFERLNPVEGFKRIFSRRALVELLKSVAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDLL 190

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +    +  + I I + +  L V+D  + + ++ + LKMSK++IK+E K++ GNP IK  
Sbjct: 191 RYTSNILFGITIRIGIVLIVLGVIDYFFQWREYENSLKMSKEDIKEEFKETEGNPQIKAE 250

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++I NPTH+A+AL Y    NDAPV+VAKG++L+A K+++
Sbjct: 251 IRKKQRQISTRRMMQDLKKADVVIINPTHFAVALMYDSEVNDAPVVVAKGKDLLALKIKE 310

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + +IPI E   LA++L+    +   IPP  Y+AVA+++  +Y  +
Sbjct: 311 EAEKLDIPIVENKPLAQALYNSTEVGQMIPPELYQAVAEVLAYVYSLR 358


>gi|150390466|ref|YP_001320515.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens
           QYMF]
 gi|149950328|gb|ABR48856.1| flagellar biosynthetic protein FlhB [Alkaliphilus metalliredigens
           QYMF]
          Length = 361

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 98/345 (28%), Positives = 181/345 (52%), Gaps = 1/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ KK +D+  +G    S+E +    ++   + L  F S    ++ S    +  
Sbjct: 12  EEKTERPTPKKRKDSREKGQVLQSKELNSAFLLIGAFVILGLFSSYIGMTMKSFTRSIYV 71

Query: 68  SATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                  L  I ++  LL +   +  +++ P  +  ++ G+    +Q   +     +   
Sbjct: 72  EYLNTDYLFSIQNLYRLLVYSLYNLLKIIAPISIASLLIGLAVSYLQVGYLFTTKTLAFK 131

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             +++  EG K+I+S+  +V   KSF+KI LVG I+         T+ + ++ +   I+ 
Sbjct: 132 LSKLNPIEGFKKIFSLKAIVELAKSFIKIGLVGYIVFQYAQGQLETIFNTMAMDMDGIIQ 191

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
              + +  + I   + +  L   D  +  +++   LKM+KQE K+E KQS GNP IK++ 
Sbjct: 192 VLIYILVNIGIRAGVVLLVLAGFDYLYQKYEYDKNLKMTKQETKEEYKQSEGNPQIKSKI 251

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   R     +MM+   +A +IITNPTH+A+A++Y   +  AP ++AKGQ+++A+ ++K+
Sbjct: 252 KEKQRQMSTKRMMQEVPKADVIITNPTHFAIAIQYNPDDFQAPRVIAKGQDILAQSIKKV 311

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             E+++PI E   LARSL+  V I + IP   Y+AVA+++  +Y 
Sbjct: 312 GLENDVPIVENKPLARSLYDTVEIGAFIPTELYQAVAEILAYVYR 356


>gi|297617157|ref|YP_003702316.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144994|gb|ADI01751.1| flagellar biosynthetic protein FlhB [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 366

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 179/348 (51%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
               KTE  + ++ +++  +G    S + +    +L     L F     +  +       
Sbjct: 16  EGGEKTEKATPRRRQESRRKGQVFRSVDLNSAVILLVGFAVLHFTTPYMLTGIQGFFSRY 75

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+     +L   +  V LL  + L  +++  P +   ++ G+   L+Q   V     +  
Sbjct: 76  LSDRALTQLTPATFHVMLLDAILL-MAKISFPVIGAVLVAGLLVNLLQVGFVFAGEPLSI 134

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +RV+  EG KRI+S+  L+  +KS  K++L G ++   L +N +    F+   P S++
Sbjct: 135 KPERVNPVEGFKRIFSLRALIELVKSVAKVVLTGWVVYSVLKKNLYLFPRFVDMEPVSMV 194

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++ + I + +  + +LD  + + +    L+MSK+E+K E KQ+ G+P I+++
Sbjct: 195 MSLGNIIFEMAMKIGVVLLVVGLLDYLYQWWEHEKSLRMSKEELKQEYKQTEGDPQIRSK 254

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+   R     +MM    +A ++ITNPTH+A+AL+Y      APV+ AKGQ+ +A ++R+
Sbjct: 255 QRQKQREMAMRRMMAEVPKADVVITNPTHFAVALKYEAEAMTAPVVTAKGQDFLALRIRE 314

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A EH + + E P LAR+++    I   IP   Y+AVA+++  +Y +K
Sbjct: 315 VAMEHQVALVENPFLARTIYYSTEIGDPIPETLYQAVAEVLAFVYRQK 362


>gi|316932838|ref|YP_004107820.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           DX-1]
 gi|315600552|gb|ADU43087.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           DX-1]
          Length = 357

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 108/350 (30%), Positives = 189/350 (54%), Gaps = 2/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D KTE P+ KK++DAL  G+   S+E + +  I    + L  F       +   L 
Sbjct: 2   SDDSDEKTEEPTQKKLDDALKRGDVAKSQEVNTWFLIAGGTLVLSSFHGSIGAGILGPLR 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L+  +   +++    I    + +  + + + +P  L+ M+  +   LIQ   V +   +
Sbjct: 62  SLIEKSWMLRVDGDGLIALTKSLMYATVAAIGVPLFLV-MITAVIGNLIQHRLVFSAEGL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P   ++S  +G KR++    L NF+K   K++ +G ++   L   +  +   ++ +  +
Sbjct: 121 TPKLSKLSPLQGAKRVFGKQALANFLKGLFKVVALGIVMVAVLYPEHDRLDALLTMDVAA 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +L        K+L  ++  +A + V D  + Y QW+ K KMS QEIKDE KQS G+P IK
Sbjct: 181 LLGVTVTLTLKLLGAVVAMLAFVAVADYFFQYRQWHEKQKMSLQEIKDEYKQSEGDPHIK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + +   R++ +MM     A+++ITNPTH+++AL+Y +    AP+ VAKG + +A K+
Sbjct: 241 GRLRQLRYQRMKKRMMAEVPGASVVITNPTHFSVALKYERG-MPAPICVAKGVDAVAFKI 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A E+N+PI E   LAR+L+  V I+  IP   Y+AVA++I  + + K
Sbjct: 300 REVAKENNVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVIGYVMNLK 349


>gi|288942622|ref|YP_003444862.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM
           180]
 gi|288897994|gb|ADC63830.1| flagellar biosynthetic protein FlhB [Allochromatium vinosum DSM
           180]
          Length = 384

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 176/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    ++EAP++K++ ++  +G    SRE + F  ++    +LLF        + S
Sbjct: 1   MAENENGQERSEAPTAKRLRESREKGQVARSRELNTFIILIVGGAFLLFLGGGMAARI-S 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +   +  +  + D   +V  L HL   A  ++ P   L M+  +   ++      + 
Sbjct: 60  QLMIDGWTLERGLIFDEGLLVPHLQHLLGRALLILAPLFGLLMVIALMGPILVGGLNFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +V+   G+KR++S+  L+  +K   K  LVG + T+++   +  +L      
Sbjct: 120 QALMPKFSKVNPISGLKRVFSVQGLMELVKGLGKFGLVGIVATLAIMSIWGNLLTLGELP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         + ++    +  +  +D+ +       +L+M+ QEIKDE K++ G P
Sbjct: 180 VEQAIVQTVHMAAWLFLIAAAALLVVAAIDVPFQVWNHQKQLRMTLQEIKDEFKETEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MM    +A ++ITNPTHYA+A+ Y+     AP L+AKG + +A
Sbjct: 240 EVKGRIRQLQHEMSQRRMMSEVPKADVVITNPTHYAVAISYVPAIMPAPRLLAKGTDAVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +R +A EH I   E P +AR+++    +N  IP   + AVA+++  +Y  +
Sbjct: 300 QAIRALAEEHRIVRVEAPRVARAIYFTTDLNQEIPNGLFVAVARILAYVYQIR 352


>gi|313200589|ref|YP_004039247.1| flagellar biosynthetic protein flhb [Methylovorus sp. MP688]
 gi|312439905|gb|ADQ84011.1| flagellar biosynthetic protein FlhB [Methylovorus sp. MP688]
          Length = 384

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  + K++E A  EGN P SRE    + +LA  + +    S    ++  
Sbjct: 1   MAE-DSDLEKTEPATPKRLEKAREEGNVPRSREFVTCAMLLAGGMGIAMMSSQFGDALKH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    +    D + ++  ++    S      P   L  +  I +  +     ++ 
Sbjct: 60  TMGGSL-HFERALAYDSNLLLMKISDSIYSLLITFAPLAGLLFIMAIAAPTLIGGWNVSN 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P F R++   G+  + S N LV  +K+  K ILVG++  + +  +  T+L      
Sbjct: 119 QAFVPKFNRLNPVSGLGNMVSKNALVELLKAVGKTILVGSVAYVVVAHDVDTILSLALLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ +      + K    I+  +  +  +D+ +    + + LKM+K+E+K E K+S GNP
Sbjct: 179 LHTSIAEVEDMLLKSFFFIVGALVLIAAIDVPYQLTTYANNLKMTKEEVKQESKESEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   R +MM    +A ++ITNPTHYA+A++Y +    APV++AKG + +A
Sbjct: 239 QIKARIRQQQREIARRRMMSEIPKADVVITNPTHYAVAIQYKELGMRAPVVIAKGADAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH I   E P LAR+L+    +   IP   Y AVA++I  ++  +
Sbjct: 299 LKIREVAAEHKIMTLESPKLARALYAHTELGDEIPQALYSAVAEIIAYVFQMR 351


>gi|260772335|ref|ZP_05881251.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP
           69.14]
 gi|260611474|gb|EEX36677.1| flagellar biosynthesis protein FlhB [Vibrio metschnikovii CIP
           69.14]
          Length = 376

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       + +
Sbjct: 1   MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLIIGSVALMWFGEMLASRLYT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S ++ ++ D S +  ++          ++  L+   +  +           + 
Sbjct: 60  TMGRFF-SLSREEIFDSSKLFDIIAGTLTHLIFPLLLILITLFVAALIGAAGVGGVSFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +P   ++S   G KR++ + +LV   KS +K++LV  +    +  +   +       
Sbjct: 119 EAARPKLSKISPLSGFKRMFGMQSLVELFKSILKVLLVAGVAFYLIDASKNDLFQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +D+ +   Q   KLKM+KQEIKDE K + G P
Sbjct: 179 YPQNIFHALEILLNFILLISCSLLVVVAIDVPFQIWQHAEKLKMTKQEIKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVALRYKQGTDKAPIVVAKGGDFLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREHEIMIVAAPPLARALYYTTELEQEIPDGLFVAVAQVLAYVFQIK 351


>gi|113969638|ref|YP_733431.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-4]
 gi|114046868|ref|YP_737418.1| flagellar biosynthesis protein FlhB [Shewanella sp. MR-7]
 gi|113884322|gb|ABI38374.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-4]
 gi|113888310|gb|ABI42361.1| flagellar biosynthetic protein FlhB [Shewanella sp. MR-7]
          Length = 376

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 164/340 (48%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +L+    L +   PGI    S++   + +  +  
Sbjct: 13  PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D + +  +   +       ++  +LL ++      +       +   + P   ++S  
Sbjct: 72  IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G KR++ +  LV   K   K  +V     + L+  +  +L   + +    ++HA   + 
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAIAAYLLLSHYFNDILLLSADHLPGNVHHALDLLV 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R + + R  
Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A  HNI 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    +   IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQLR 351


>gi|330808231|ref|YP_004352693.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376339|gb|AEA67689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 378

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 179/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K++ ++  +G    S+E +  + +LA    LL +       +  
Sbjct: 1   MAESESGQDKTEDPTEKRLRESREKGETARSKELNTLAVMLAGAGGLLIYGGGLALDLL- 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  L  S  +  L     +   L H    A   + P L+  ++  +   +     +   
Sbjct: 60  EIMRLNFSLPREVLLTPGSMAQYLLHSGKIAILAIQPVLIFLLLAAVIGPISLGGWLFAA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + L+  +K+F K +LV  +    L  +   +L      
Sbjct: 120 GSLAPKFSRMNPAAGLKRMFSTSALMELLKAFGKFLLVLFVALTVLQSDIDDLLRIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + I   +  +  +D+    +Q   KL M+KQE++DE K S G P
Sbjct: 180 LEQAIIHSVQLVGWSTLWIACGLILIAAIDVPIQLYQSKQKLMMTKQEVRDEHKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A   A ++ITNPTHYA+AL+Y   + +APVL+AKG + +A
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAIPDADVVITNPTHYAVALKYDPEKGNAPVLLAKGSDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  + + + E P+LARS++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAVANEVMLLESPALARSIYYSTELDQEIPGGLYLAVAQVLAYVYQIR 352


>gi|149182522|ref|ZP_01860995.1| flagellar biosynthesis protein B [Bacillus sp. SG-1]
 gi|148849782|gb|EDL63959.1| flagellar biosynthesis protein B [Bacillus sp. SG-1]
          Length = 360

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/346 (29%), Positives = 182/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             K+E  + KK +D+  +G    S++ +    +LA  ++L F  S     +     +   
Sbjct: 13  GEKSEKATPKKRQDSRKKGQTAKSQDVNTAIILLAVFLFLTFSASYIGDVIFDLFRISFQ 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L   S ++ ++  +    + L+ P +L+ ++ G+ S  IQ   +     ++P  
Sbjct: 73  DYMMMDLTQDSFMLIVM-EVLQQVAILLGPIMLVALLAGLFSNYIQVGVMFTAEPLQPKL 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRI+S+  +V  +KS +KI  VG I  + L  N   +L     + +  L  
Sbjct: 132 EKIDPIKGAKRIFSLRAIVELLKSILKIGFVGAITFVILWMNIDEVLGLSFKSAYDSLAA 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 ++ I   L +  L+V D  +  + +   ++MSKQ+IKDE K + G+P+IK++ K
Sbjct: 192 MASLTVQMGIAASLALLFLSVFDYLYQKYDFEKNIRMSKQDIKDEHKNAEGDPLIKSKIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+AL+Y + ++DAP ++AKG + +A+K++ IA
Sbjct: 252 QRQREMAMRRMMQEVPEADVVITNPTHYAIALKYDENKSDAPYVIAKGVDYMAQKIKYIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH+I + E   LARSL+    I   IP  F+KAVA+++  +Y  K
Sbjct: 312 GEHDIIMVENRPLARSLYDSAEIGDTIPEEFFKAVAEILAYVYRMK 357


>gi|323705428|ref|ZP_08117003.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535330|gb|EGB25106.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 357

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 182/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ +DA  +G    SRE +     +A  + + F     I  + + +  L  
Sbjct: 8   GEKTEPATPKRRQDARKKGQVFQSREVTSALVTIAGFLVIYFTVQNSIAEIMNLIKFLFL 67

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +       +  I+ I  L   +     +L++P +    +  + S   Q   V  L  +  
Sbjct: 68  NYGGASDNVFTINGIYKLFEMVFSVFIKLILPTIATVFIIALISTYAQVGFVFTLETLNF 127

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  +G+KR++S  +L+  +KS +KI ++  ++   L   Y  +   +  +   ++
Sbjct: 128 KLERLNPLDGLKRMFSKRSLLELVKSIIKISILAYVMYSFLIGQYKGIPQLLDMSVQDLI 187

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +       +L+ I L +  L  +D  + + ++ S L+MSK++IK+E K++ GNP IK+ 
Sbjct: 188 KYNMNIFAGILLRISLVLVVLGAIDYVYQWREYESNLRMSKEDIKEEFKETEGNPQIKSE 247

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV+VAKGQ+ IA+K+++
Sbjct: 248 IRKKQRQISMRRMMQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQKIKE 307

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +++I I E   LA+SL+K   I  +IPP  YKAVA+++  +Y  +
Sbjct: 308 EAIKYSIAIVENKPLAQSLYKTTEIGDSIPPELYKAVAEVLAYVYSLR 355


>gi|258621117|ref|ZP_05716151.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573]
 gi|262170893|ref|ZP_06038571.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
 gi|258586505|gb|EEW11220.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM573]
 gi|261891969|gb|EEY37955.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
          Length = 376

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       + +
Sbjct: 1   MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S  + ++ DI  +  ++    ++    ++  L+   +  +           + 
Sbjct: 60  AMQRLF-SLDREEIFDIGKLFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGINFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|295690541|ref|YP_003594234.1| flagellar biosynthetic protein Flhb [Caulobacter segnis ATCC 21756]
 gi|295432444|gb|ADG11616.1| flagellar biosynthetic protein FlhB [Caulobacter segnis ATCC 21756]
          Length = 361

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 202/353 (57%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++  P++KTE PS+K++ DA  +G+   S +    +S+   +  ++         +++
Sbjct: 1   MADDTDPESKTEEPSAKRLADARAKGDVVKSADIPQLASLAGAVSVVILAGGWLTRDLSA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L+  +A A    L     +V +    +++A   +I  +L+    G  +++ Q   +L  
Sbjct: 61  ALYPFIAHAGTIDLSSAGAMVVM-KQATMAALPPLILVMLVSAFAGAIAHIAQSGFLLTP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP F ++ L +G+ RI+ I+  V F KS VK ++ G I  + L  +   + + +  +
Sbjct: 120 SKLKPDFSKLDLIKGLGRIFGIDGFVQFAKSAVKFLVTGLIAWMVLKPHVGEVRNLVGMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++L  A    + +L+ +++F+      D  W   ++ ++++M+ QE+KDE KQS G+P
Sbjct: 180 PAAMLPEALKLSKSLLMAVIIFLTATAAFDWFWQRQRFMNRMRMTLQEVKDEFKQSDGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K +++ I   R R +MM+A  +AT+++ NPTHYA+AL+Y   E  AP+ VAKG + +A
Sbjct: 240 HVKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEAGETPAPLCVAKGVDELA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R IA EH +P+ E+P LAR+L+  V ++  IP   ++AVA++I  I + K
Sbjct: 300 LKIRAIAEEHGVPVLEDPPLARALYASVEVDEEIPVEHFEAVAKVISFILNGK 352


>gi|239826631|ref|YP_002949255.1| flagellar biosynthesis protein FlhB [Geobacillus sp. WCH70]
 gi|239806924|gb|ACS23989.1| flagellar biosynthetic protein FlhB [Geobacillus sp. WCH70]
          Length = 360

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 170/346 (49%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S + +    +L   + L F  +     +   ++    
Sbjct: 13  GEKTEKATPRKRQEVREKGQVAKSADINTAIVMLVVFLVLYFLGTFYKEKLLHFMYQSFE 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
              +  L  I  +  L      + + LV P     ++    +  +Q   +     +K  +
Sbjct: 73  QYARVDL-TIDSVHRLSITWLKNMAMLVAPIFFAAVIAACLANFLQVGFLFTTEPLKMKW 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R+   +G KR+ S+  +V  +KS +KI +VG +    L      +L   + +  + L  
Sbjct: 132 NRLDPVQGFKRMISLRAIVELLKSILKISVVGLVTFALLWFQIDHILSLTTKSISTTLSS 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +    +   ++MSKQ+IKDE K++ G+P+IK++ K
Sbjct: 192 LASLTAKMGLYASSALLFLAIFDYLYQRFDFEKNIRMSKQDIKDEYKKTEGDPLIKSKIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A ++ITNPTHYA+AL+Y   + DAP++VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPMVVAKGVDYVALKIKQLA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357


>gi|117919803|ref|YP_868995.1| flagellar biosynthesis protein FlhB [Shewanella sp. ANA-3]
 gi|117612135|gb|ABK47589.1| flagellar biosynthetic protein FlhB [Shewanella sp. ANA-3]
          Length = 376

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 164/340 (48%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +L+    L +   PGI    S++   + +  +  
Sbjct: 13  PTGRRLEQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMERAA 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D + +  +   +       ++  +LL ++      +       +   + P   ++S  
Sbjct: 72  IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G KR++ +  LV   K   K  +V     + L+  +  +L   + +    ++HA   + 
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAIAAYLLLSHYFNDILLLSADHLPGNVHHALDLLV 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R + + R  
Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A  HNI 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    +   IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLEQQIPEGLFTAVAQVLAYVFQLR 351


>gi|163852023|ref|YP_001640066.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
           PA1]
 gi|163663628|gb|ABY30995.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
           PA1]
          Length = 354

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 191/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    + A  L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGGLPSDSGTYLGVALRAAWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+  ++  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L        K++  +L   A + + D  +  ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTH+A+ALRY      AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A +H++P+ E P LAR+L   V ++  IP   Y+AVA++I  +   +
Sbjct: 299 LRIRAVATDHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351


>gi|192360845|ref|YP_001982207.1| flagellar biosynthesis protein FlhB [Cellvibrio japonicus Ueda107]
 gi|190687010|gb|ACE84688.1| flagellar biosynthetic protein FlhB [Cellvibrio japonicus Ueda107]
          Length = 379

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 2/354 (0%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E +D+   KTE PS++++E A  EG  P SR+ +  + +L   I L  F       + 
Sbjct: 1   MAEGDDSSQEKTEEPSARRLEKAREEGQIPRSRDLTTTAVLLLAAIGLWVFAEFMGGKLL 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
                     ++  + D + ++  L          + P ++L ++  I   +     +++
Sbjct: 61  GITRENFI-ISRTDIFDTNAMISHLVRAIYQGMLSMAPLMVLLLIASIVGPIALGGWLMS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P   R+    G+KRI+S+ +L+   K+ +K+ ++       L      M      
Sbjct: 120 SKAMMPKLSRMDPIAGLKRIFSLKSLIELFKALLKVSIILLTTIWLLFLYAQDMFRISDE 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              + + H+        I +      +  +DI    ++   KLKMS+Q++KDE K + G 
Sbjct: 180 AVGNAIVHSLEISIYATIALAATTIVIAAVDIPLQLYEHNKKLKMSRQDLKDEAKDTDGK 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R + + R   + +MM     A ++ITNPTH+A+AL+Y     D P+++AKG + I
Sbjct: 240 PEVKGRIRQLQREMAQRRMMANVPMADVVITNPTHFAVALKYDPETMDTPIMLAKGGDNI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+IA  HNI   E P LAR+++    I+ AIP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIAKAHNIETIESPPLARAIYYTTEIDQAIPSGLYLAVAQVLAYVFQLR 353


>gi|186477710|ref|YP_001859180.1| flagellar biosynthesis protein FlhB [Burkholderia phymatum STM815]
 gi|184194169|gb|ACC72134.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
          Length = 411

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 99/350 (28%), Positives = 184/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            D+   KTE+ + +++E A  EG    SRE + F+ + A  +   +  S  I      + 
Sbjct: 12  EDSDLEKTESATPRRLEKAREEGQVARSRELATFALVAAGFLGA-WGMSGMIGEHVQTML 70

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               +     + D          ++   + +++P L L  +  + + +     +L+   +
Sbjct: 71  RTAFTFNHETVFDPKRAFISAGAVTREGAYMLMPLLALLGLAALLAPMAMGGWLLSTKSL 130

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P+F+R++   G+ RI+SIN  +    S  KI++VG I  +++      +L   +   H 
Sbjct: 131 APNFQRLNPVSGLGRIFSINGWIQLGMSLAKIVVVGLIGGLAIWHRREDILALATQPLHV 190

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L +A   +     M +  +  L  +D+ +    ++ KL+M+K+E+K E ++S G+P +K
Sbjct: 191 ALSNAGHLIAVCCAMTVGGMFLLAAMDVPYQLWSFHKKLRMTKEEVKREHRESEGDPHVK 250

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +S  R+  R +MM    +A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A ++
Sbjct: 251 ARIRSQQRAMARRRMMANVPKADVVVTNPTHFAVALQYTDGEMGAPKVVAKGVNLVAARI 310

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A E+N+P+ E P LAR+L+  V +N  IP   Y AVA+++  +Y  +
Sbjct: 311 RELAVENNVPLLEAPPLARALYHNVELNREIPGALYGAVAEVLAWVYQLR 360


>gi|121997283|ref|YP_001002070.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1]
 gi|121588688|gb|ABM61268.1| flagellar biosynthetic protein FlhB [Halorhodospira halophila SL1]
          Length = 391

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 169/352 (48%), Gaps = 2/352 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+ E++    KTE P+ K+ E++  +G  P SRE +    +L     LL         +T
Sbjct: 1   MAQESEDGQEKTEDPTPKRREESRKKGQVPRSRELTTMLLLLVAAGALLALGPFMGNQLT 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           + L     +  +  + D   ++  L          V+P + + +   + +         +
Sbjct: 61  ALLEWSF-TIDRSHIYDPGIVIERLHEALGRGLLTVLPFIAVMLAAAVIAPTALGGWSFS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++P  +++S  +G +R++     V   K+  K++++G          +        A
Sbjct: 120 FHPMQPKPEKLSPIKGFQRMFGTKAAVELGKALGKVLVIGGTAVGLFVLFWDNFYTMSRA 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                +            ++ L +  +  +DI +  +    K++M++QE+K+E KQ+ G 
Sbjct: 180 PLEPSMAEGMRLFYIFFFLLALSMLVVVAIDIPYQIYDHTQKIRMTRQEVKEEFKQTEGK 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +   R     +MME    A ++ITNP HYA+AL+Y Q+   AP +VAKG +L+
Sbjct: 240 PEVKQRVREQQREMTNRRMMENVPDADVVITNPAHYAVALKYDQSTMRAPTVVAKGADLL 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A ++R++A E++I IF+ P LAR+L+    ++  IP   Y AVAQ++  +Y 
Sbjct: 300 AARIRELAEENDILIFQAPPLARALYHSADLDQEIPGALYFAVAQVLAYVYQ 351


>gi|326204607|ref|ZP_08194463.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM
           2782]
 gi|325985174|gb|EGD46014.1| flagellar biosynthetic protein FlhB [Clostridium papyrosolvens DSM
           2782]
          Length = 381

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 104/346 (30%), Positives = 178/346 (51%), Gaps = 1/346 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE  + KK  DA  +G    SRE +    ++  ++ +  F       ++  L      
Sbjct: 30  DKTEKATPKKKSDARKKGQVFQSREVTASLILIVTVVAMRIFGGTIYAQLSQYLKKTFNE 89

Query: 69  ATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                   D + +  L   + +  ++ V+P LL+  +  +     Q   +  +  +K   
Sbjct: 90  YLTIKDAIDFNILANLFIDVLMVLAKTVLPLLLVAFLTALIVNYAQVGILFTMETLKIKG 149

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++   G KRI+S+ ++V  +KS +KII+VG +    L      +L  I  +  S+L  
Sbjct: 150 DRINPLSGFKRIFSLRSVVELLKSIIKIIIVGWVAYSYLKSKTEQVLTLIDTDLMSVLIF 209

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  V + I + +  L   D  +  + +   LKM+KQE+K+E KQ  GNP IK++ K
Sbjct: 210 IADAAFTVALRICMAMVLLGFADYLYQRYDYEKNLKMTKQEVKEEYKQMEGNPEIKSKIK 269

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTH+A+AL+Y   ++ AP +VAKGQ+ IA ++++IA
Sbjct: 270 QKQRQMSLKRMMQDIPKADVIITNPTHFAVALKYDSEKSAAPFVVAKGQDYIALRIKQIA 329

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ + I E   LAR+L+  V I  AIPP  Y+AVA+++  +Y+ K
Sbjct: 330 ADNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375


>gi|304316890|ref|YP_003852035.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778392|gb|ADL68951.1| flagellar biosynthetic protein FlhB [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 357

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 181/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ +DA  +G    SRE +     +A  + + F     I  + + +  L  
Sbjct: 8   GEKTEPATPKRRQDARKKGQVFQSREVTSAIITIAGFLVIYFTVQNSIEEIMNLIKYLFL 67

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +          ++ I  L   +     +L++P +    +  + S   Q   V     +  
Sbjct: 68  NYGGASDNTFTVNGIYKLFEIILPVFLKLILPTVATVFLVALVSTYAQVGFVFTSESLNI 127

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  EGIKR++S   ++  +K+ VKI ++G ++   L   Y  +   +  +   ++
Sbjct: 128 KLERLNPLEGIKRMFSRRTILELLKAVVKIGILGYVMYSFLIGQYKGIPQLLDMSVQDLI 187

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            ++      +L+ I + +  L V+D  + +  + S L+MSK++IK+E K++ GNP IK+ 
Sbjct: 188 KYSLNIFGGILLRIFIVLIVLGVVDYIFQWRDYESNLRMSKEDIKEEFKETEGNPQIKSE 247

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +M++   +A ++ITNPTH A+AL Y    NDAPV+VAKGQ+ IA+++++
Sbjct: 248 IKKKQRQISMRRMIQNIKKADVVITNPTHIAVALMYDNEINDAPVVVAKGQDYIAQRIKE 307

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +++I I E   LA+SL+K   I  +IPP  YKAVA+++  +Y  +
Sbjct: 308 EAIKYSIAIVENKPLAQSLYKTTDIGDSIPPELYKAVAEVLAYVYSLR 355


>gi|218530777|ref|YP_002421593.1| flagellar biosynthetic protein FlhB [Methylobacterium
           chloromethanicum CM4]
 gi|218523080|gb|ACK83665.1| flagellar biosynthetic protein FlhB [Methylobacterium
           chloromethanicum CM4]
          Length = 354

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    +    L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+  ++  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L        K++  +L   A + + D  +  ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDAFYQRNRWHKRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTH+A+ALRY      AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A +H++P+ E P LAR+L   V ++  IP   Y+AVA++I  +   +
Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351


>gi|149377872|ref|ZP_01895601.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter
           algicola DG893]
 gi|149357814|gb|EDM46307.1| Flagellar biosynthesis pathway, component FlhB [Marinobacter
           algicola DG893]
          Length = 378

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 178/354 (50%), Gaps = 2/354 (0%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E ND    KTE  + +++E A  +G    S+E +  + +LA    LL F +    S+ 
Sbjct: 1   MAEENDNSQEKTEEATPRRLEKAREDGQTARSKELATMAVLLAGAGGLLMFGASMGASLE 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           S +        +  + D  H+   L   +  A+  + P L+L ++  +   +     +++
Sbjct: 61  SIMRDSFV-LERSAIFDTRHMSVQLMASAKEAALSLAPLLILLLVAAVAGSIGIGGLLVS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P   R+   +G+KR++S+ +L+  +K+ +K+ LV  +  + L      +L     
Sbjct: 120 GKAIAPKLNRMDPLKGLKRMFSMRSLIELVKAILKVGLVMAVAILILNLRTDDLLSIAEE 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              S + H  +T+     ++      +  +D+ +       KL+M+KQE+KDE K + G 
Sbjct: 180 PARSAMEHVVWTMAWSFFILACATIVIAAIDVPFQIFDHQKKLRMTKQEVKDEYKDTEGK 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K + + + R   + +MM+    A ++ITNPTHYA+AL+Y Q    AP++VAKG +  
Sbjct: 240 PEVKGKIRQLQREMAQRRMMQDVPGADVVITNPTHYAVALKYDQKNMAAPIVVAKGSDET 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+ +IA E+ + I   P LAR+++    I   IP   Y A+AQ++  ++  +
Sbjct: 300 AFKIMEIARENKVEILRTPPLARAVYHNTDIGGEIPDGLYMAIAQVLAYVFQLR 353


>gi|253996636|ref|YP_003048700.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8]
 gi|253983315|gb|ACT48173.1| flagellar biosynthetic protein FlhB [Methylotenera mobilis JLW8]
          Length = 387

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 101/354 (28%), Positives = 179/354 (50%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTE  S K++E A  EG+ P SRE +  + +LA  + +L        ++ +
Sbjct: 1   MAE-ESDLEKTEDASPKRLEQAREEGDVPRSRELATVTVLLAAGLAMLMMGGQLADALKT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L S  +    D   ++  ++    +      P  L+     I S  +    V + 
Sbjct: 60  SMSSGL-SFQRAYAYDPMLLLMKISDNIYNLLLAFSPLALILFFVAIASPALIGGWVFSE 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +++   G   ++S N+L   +KS  K ILVG +  + ++ +  ++L      
Sbjct: 119 KALIPKFGKLNPITGFSNMFSKNSLAELIKSIAKAILVGFVSYVVISHDMESILSLSLLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +    + I+  +  +  +D+ +  +Q+  KLKM+K+E+K E K+S GNP
Sbjct: 179 LDQSIAELNHLLLTSFLAIVSVLVLIAAIDVPFQLYQYADKLKMTKEEVKRESKESDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK+R +   R   R +MM     A ++ITNPTHYA+A++Y +    APV+VAKG + IA
Sbjct: 239 EIKSRIRQQQREMARRRMMAEIPNADVVITNPTHYAVAIKYKEGGMLAPVVVAKGADAIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
            K+R+ A EH + I E P LAR+++    +   IP   Y AVA+++  ++  +I
Sbjct: 299 LKIREAAEEHKVLIVEAPKLARAIYTHTELTHEIPEALYTAVAEVLAYVFQMRI 352


>gi|302670739|ref|YP_003830699.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus
           B316]
 gi|302395212|gb|ADL34117.1| flagellar biosynthetic protein FlhB [Butyrivibrio proteoclasticus
           B316]
          Length = 383

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 98/357 (27%), Positives = 181/357 (50%), Gaps = 5/357 (1%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSV 58
           +E+     K+E P+SKK++DA  EG    S+E +   S+LA  + L F   F      ++
Sbjct: 24  AEDANGAEKSEEPTSKKLDDARKEGQVAKSQEVATAFSLLAFFLILRFGYGFMGENFEAI 83

Query: 59  TSDLHVLLASATQR--KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
              ++  +    +       +++I   +    L+   +  P  +   +      L+Q   
Sbjct: 84  FGSVYNTIPFVARMYDGFLPVNYIYSTINKALLTVLLICAPFFIFGFLIAFLCDLVQVGF 143

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
                 ++P   +++   G+K+I+S   + + +KS +K++++G +I    +    ++   
Sbjct: 144 KPTSKPLQPKLSKLNPISGMKKIFSTRKIFDLLKSILKLVIMGVVIISYFSNRQESIFLL 203

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                   +      +  + I I      +   D+ +   +++  + M+KQE+KDE K +
Sbjct: 204 YDIPLKQAIGLMGSFIIDLGIRIAAAYMIIAFADLIYQRRKFHKDMMMTKQEVKDEFKNT 263

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP +K+ QK       R +MM+   +A ++ITNPTHYA+A+RY   E DAP++VAKG 
Sbjct: 264 EGNPEVKSAQKRRMMQASRRRMMQELPKADVVITNPTHYAVAIRYDAEEADAPIVVAKGA 323

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + IA+K++++A E+N+ I E   LAR L+  V I   +PP  YKAVA+++  +YH K
Sbjct: 324 DYIAQKIKEVAKENNVEIVENKPLARMLYANVEIGEMVPPELYKAVAEVLAYVYHLK 380


>gi|24374727|ref|NP_718770.1| flagellar biosynthesis protein FlhB [Shewanella oneidensis MR-1]
 gi|24349387|gb|AAN56214.1|AE015759_6 flagellar biosynthetic protein FlhB [Shewanella oneidensis MR-1]
          Length = 376

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 165/340 (48%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ ++++ A  +G    S+E    + +L+    L +   PGI    S++   + +  +  
Sbjct: 13  PTGRRLDQAREKGQVARSKELGTATVLLSAATGL-YMLGPGIAKALSNVFERVFTMDRAA 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D + +  +   +       ++  +LL ++      +       +   + P   ++S  
Sbjct: 72  IFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPI 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G KR++ +  LV   K   K  +V     + L+  +  +L   + +    +YHA   + 
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVALASYLLLSHYFNDILLLSADHLPGNVYHALDLLV 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R + + R  
Sbjct: 192 WMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A  HNI 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFKIREVARAHNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    ++  +P   + AVAQ++  ++  +
Sbjct: 312 IVTAPPLARAIYHTTKLDQQVPEGLFTAVAQVLAYVFQLR 351


>gi|240145485|ref|ZP_04744086.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82]
 gi|257202300|gb|EEV00585.1| flagellar biosynthetic protein FlhB [Roseburia intestinalis L1-82]
          Length = 379

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 174/357 (48%), Gaps = 5/357 (1%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF---SPGIYSV 58
           +++     KTE  + KK+ +A  +G    S+E +    ++   + L  F      G   V
Sbjct: 17  AKDGPGGEKTEPATEKKLREAREDGKVAKSKELTAAFDLIVLFLVLKVFISLIGNGFLEV 76

Query: 59  TSDLHVLLASATQRKLEDIS--HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
              ++ L+         + S   I   L ++ +   ++  P  +  +       ++Q   
Sbjct: 77  FYYVYKLMPDFVSVNAMESSTKEITSFLHNVYIEMFKMAAPFFVFGVAVTALVSILQVGW 136

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
            +    +KP   + +   G KRI+S ++L   +KS +KI L+  +   S+      +   
Sbjct: 137 KVTAKPLKPKGDKFNPINGFKRIFSKDSLFELLKSILKIGLIIYVAYTSIKGEANDIFIL 196

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                +  +      +      I L    + + D  +  H++   +KM+KQE+KDE K +
Sbjct: 197 YDIPLNQAVVLCGNVIINAGFKISLVYLVVGIADFVYQKHRFNEDMKMTKQELKDEYKNT 256

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            GNP IK RQ+   R   + +MM+   +A ++ITNPTH A+A++Y    + AP+++AKG+
Sbjct: 257 EGNPEIKGRQRQRMREASQRRMMQDVPKADVVITNPTHLAVAIKYDAEVSRAPIVIAKGE 316

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A+K+R+ A E++I I E   LAR L+  V I + IPP  Y+AVA+++  +Y+ +
Sbjct: 317 DYLAQKIREKAKENHIEIVENKPLARMLYANVDIGAEIPPELYQAVAEILAMVYNLR 373


>gi|71281473|ref|YP_268257.1| flagellar biosynthesis protein FlhB [Colwellia psychrerythraea 34H]
 gi|71147213|gb|AAZ27686.1| flagellar biosynthetic protein FlhB [Colwellia psychrerythraea 34H]
          Length = 376

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 173/352 (49%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D+   KTE P++KK+ DA  +G    S++   F  ++     +L        S+ +
Sbjct: 1   MADSDSG-EKTEEPTAKKLTDARKKGQIARSKDLGTFFVLVGSACAMLLMGKALANSMAN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +  S ++ +  D++ +  ++          ++    + M+       +      + 
Sbjct: 60  MMSHMF-SLSREEAMDVNALFKVINDGVYQIIPPLLWIFFIVMLAAFIGNTLLGGMSFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   ++S   G KR++ +   V  +KS +K  +V  +  + L+  +  +L      
Sbjct: 119 DAMMPKASKLSPMAGFKRMFGVQAAVELIKSVLKFFVVFIVAFLLLSGLFEEILGLSRET 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +   HA   ++ + +++ L I  + V+D  +       +LKM+KQEIKDE K + G+P
Sbjct: 179 IPANFEHAITMLQWMFLVLALSIGIIVVIDAPYQVWNHNRQLKMTKQEIKDEHKGTEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +       + +MM+    + ++ITNPTH+++AL+Y      APVL AKG + +A
Sbjct: 239 EIKGRIRRTQYEMSQRRMMQDVPESDVVITNPTHFSIALKYDAAAGGAPVLSAKGVDEMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             +R IA EH I I + P+LARSL+    +   IP   + AVAQ++  I+  
Sbjct: 299 LHIRTIAKEHQIEIIQSPALARSLYYTAEVGDDIPEELFAAVAQVLAFIFQL 350


>gi|229827381|ref|ZP_04453450.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC
           49176]
 gi|229788319|gb|EEP24433.1| hypothetical protein GCWU000182_02769 [Abiotrophia defectiva ATCC
           49176]
          Length = 387

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 168/350 (48%), Gaps = 2/350 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK+EDA  EG    S +      +L     L  F +             
Sbjct: 31  EGGDKTEKATPKKLEDARKEGRVARSSDLINGLMLLLMFFVLRIFGNFMAKGFLESFVKY 90

Query: 66  L--ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               +    ++ D+   V L   +        +P L+   +      ++Q    +    +
Sbjct: 91  YNKTADISMEIFDVKQAVNLGNEIVFDIVIACLPVLIGSFLVAFAGNVVQIGWKVTTKPL 150

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP   R++   G+KR++S   +V  +KS +K++ +  +    + + +  +L+        
Sbjct: 151 KPKLDRLNPIGGLKRMFSQEKVVELIKSILKVLAIAIVAYNEVKDRWLFILNLYDFEFMQ 210

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            + + F  V  V + I +    + + D G+   +    L+MSKQE+KDE+KQS G+P +K
Sbjct: 211 AIVNIFDIVLDVGVKISVLFVIIGIADFGYQKWKHLHDLRMSKQEVKDEMKQSEGDPQVK 270

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R   R +MM+   +A ++ITNPTH+A+A++Y + + +AP ++AKG + +A  +
Sbjct: 271 GRIRQKMREGARRRMMQELPKADVVITNPTHFAVAIKYDKEKAEAPYVLAKGADYVAATI 330

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ A EH I I E   LAR L+  V I   IPP  Y+ VA+++  +Y  K
Sbjct: 331 KEAAKEHKIEIVENKPLARMLYYNVEIGEQIPPELYQMVAEVLAYVYSVK 380


>gi|229591837|ref|YP_002873956.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens SBW25]
 gi|229363703|emb|CAY51084.1| flagellar biosynthetic protein flhb [Pseudomonas fluorescens SBW25]
          Length = 378

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  ++++A    LL +       +  
Sbjct: 1   MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGGGLALDLME 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +    A   +  L +   +   L H    A   V P L+  ++  +   +     +   
Sbjct: 61  LMKHNFALP-REVLLNPDAMGQYLLHSGKIAILAVQPILITLLLAALIGPVALGGWLFAA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S   LV  +K+  K IL+  +  + L+ +   +L      
Sbjct: 120 GSMAPKFSRMNPGAGLKRMFSAKALVELLKALAKFILILFVALMVLSSDIDDLLRIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S + H+   V    + +   +  +  +D      + + KL M+KQE++DE K   G P
Sbjct: 180 LESAIIHSVQVVGWSALWMAAGLIIIAAVDAPIQLWESHKKLLMTKQEVRDEHKDQEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + KMM +   A +IITNPTHYA+AL+Y   +  AP+L+AKG +  A
Sbjct: 240 EVKQRIRQLQREMSQRKMMASVPDADVIITNPTHYAVALKYDPEKGGAPMLLAKGSDFTA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+I + E P LARS+F    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAVAHDILLLESPELARSIFYSTDLDQEIPAGLYLAVAQVLAYVYQIR 352


>gi|254501745|ref|ZP_05113896.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
 gi|222437816|gb|EEE44495.1| flagellar biosynthetic protein FlhB [Labrenzia alexandrii DFL-11]
          Length = 359

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 192/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DA ++G+ P S+E S + ++    + +         S+ +
Sbjct: 1   MADETDDSEKTEDPTQKRLKDAHDKGDVPKSQEVSTWFTLAGATLMIAIMAPGAAASLGN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   +  A Q  + D   +  L      S + +V   LL  ++  +   LIQ  P+L  
Sbjct: 61  LLKGYIEHAHQIPV-DGYALKALWRDTGQSVALIVGLPLLALVVMAVFGNLIQHQPLLTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   +VS   G KR++S  +LVNF K  VKI++VG ++   L  +       I A+
Sbjct: 120 ETIKPKLSKVSPLSGFKRLFSSESLVNFAKGMVKILVVGAVMVAVLWPHRDEAEIMIFAD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              IL  A   + +VL  IL  +  +   D  +  ++W++K KMS +E+K+E KQ+ G+P
Sbjct: 180 EMIILEEARILILQVLAAILAVMTVVAAADFVYQKNKWFNKQKMSLKEVKEEFKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + +   R R +MM A   AT+++TNPTHYA+AL+Y +    AP+ VAKG + +A
Sbjct: 240 HVKGKIRQLRMERSRKRMMSAVPAATVVVTNPTHYAVALQYEEG-MGAPLCVAKGTDALA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A EH +P+ E P LAR+L+  V I   +P   +KAVA++I  ++  +
Sbjct: 299 LRIRDVAKEHEVPVIENPPLARALYASVEIEQEVPEEHFKAVAEVIGFVFRMR 351


>gi|170741402|ref|YP_001770057.1| flagellar biosynthesis protein FlhB [Methylobacterium sp. 4-46]
 gi|168195676|gb|ACA17623.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
          Length = 354

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 115/350 (32%), Positives = 208/350 (59%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    ++KTE+P+ +++ +A+ +G+ P+SREAS+ +S++  LI L  F      ++  
Sbjct: 1   MADETDQESKTESPTERRVREAIEKGDVPVSREASVLASVIGLLIALTLFVRGQAATLAR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +   L+       LE+      LL  ++++A R ++P L +  + G+ + ++Q +P    
Sbjct: 61  EFVPLIDQPRGFTLENARDATLLLQSVAIAAGRFLLPVLAILAVCGLAASMLQNLPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G  RI+  +  V F+KS  K + +  +  + L      +L+ ++ +
Sbjct: 121 DRIQPKWSRVSPASGWSRIFGRSGQVEFLKSLFKFLTITVVSLLLLRSERHKVLNAMTVD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         +++  + +    L   D+ W+  +W   L+MS+QE KDE KQ  G+P
Sbjct: 181 PSQVPELILSMAIRLVSAVSIATIVLVAADLIWARLRWQRSLRMSRQETKDEHKQIEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R +S+A+ R R +M+ A  RAT++I NPTH+A+ALRY + EN AP++VAKGQ+LIA
Sbjct: 241 LVKARLRSLAQDRTRKRMLAAVPRATVVIANPTHFAVALRYERDENPAPLVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            K+R+IA  + IP+ E+  LARSL+  V ++  IP  FY+AVAQ+++ ++
Sbjct: 301 LKIREIAEANGIPVIEDKPLARSLYDSVQVDQLIPAEFYRAVAQILFYVF 350


>gi|149188098|ref|ZP_01866393.1| flagellar biosynthesis protein B [Vibrio shilonii AK1]
 gi|148838086|gb|EDL55028.1| flagellar biosynthesis protein B [Vibrio shilonii AK1]
          Length = 376

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L+ F      ++  
Sbjct: 1   MAESD-GQERTEDATPQRLKQAREKGQVARSKELASVSVLIVGALSLMMFGEGLARALFG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  + ++ ++ D + +  +      S    ++  L +  +  +           + 
Sbjct: 60  SMARLF-NLSREEIYDSTKLFDVALGALSSLLLPLLLILFVLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K+ LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGMQSWVELIKSILKVTLVAGMAFYLVNASRADLFQLSMEV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K + G P
Sbjct: 179 FPQNIFHALDILLNFILLISATLLIVVAIDIPFQIWQHANQLKMTKQEVKDEFKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +IITNP H+++ALRY Q ++ APV+VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIITNPEHFSVALRYKQGQDKAPVVVAKGIDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I +   P LARSL+    +   IP   + AVAQ++  +Y  K
Sbjct: 299 LKIREVAREHSIYVIPSPPLARSLYHTTELEQEIPDGLFAAVAQILAYVYQLK 351


>gi|240139290|ref|YP_002963765.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
 gi|254561746|ref|YP_003068841.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
 gi|240009262|gb|ACS40488.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
 gi|254269024|emb|CAX24985.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
          Length = 354

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MSDETDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSARPVAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    +    L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGGLPSDSGTYLGVALRAAWVCTKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+  ++  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGMDAWVNFGKGLAKIIVVGTIAGTILWSEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L        K++  +L   A + + D  +  ++W+ +L+M+K+E+K E K+S G+P
Sbjct: 180 PGVALQGTLTLALKMMGGMLAVYAVIALGDALYQRNRWHKRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTH+A+ALRY      AP+ VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHFAVALRYEAG-MAAPICVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A +H++P+ E P LAR+L   V ++  IP   Y+AVA++I  +   +
Sbjct: 299 LRIRAVAADHDVPVMENPPLARALHATVEVDEEIPAEHYRAVAEVIGFVLRLR 351


>gi|118589950|ref|ZP_01547354.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
 gi|118437447|gb|EAV44084.1| flagellar biosynthesis protein B [Stappia aggregata IAM 12614]
          Length = 357

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 132/353 (37%), Positives = 204/353 (57%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D  D+KTE P+ KKI DA+ +GN P+SREA + ++ +A L+   F  +     +  
Sbjct: 1   MSEED-KDSKTEEPTEKKISDAIEKGNTPVSREAPVLATFIATLLIGSFVITSASRQLIQ 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL  +    L + +  + L   +S+     + P + L    G+ S  +Q  P +  
Sbjct: 60  MLTHLLDLSGGVDLGNSADALLLTHAVSIEVLVFLAPIVALLAASGLASAFLQNTPSIVF 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP   ++SL +G  RI+    LV F+K+  K   V  I+      N   +++ +  +
Sbjct: 120 HRIKPDASKLSLAKGWSRIFGAQGLVEFLKAVFKFSTVSAIVYGQFRANEAELINAMFTD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++         K++  + +    L  +DI WS   W   L+MSKQEIKDE KQ  G+P
Sbjct: 180 PSALPEAILQISMKLIAGVCIVTILLVTVDILWSRSHWRKNLRMSKQEIKDEHKQMEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K RQ+S+AR R R++MM A  +AT+I+ NPTH+A+ALRY   +N APV+VAKGQ+LIA
Sbjct: 240 IVKARQRSLARDRARNRMMSAVPQATLIVANPTHFAVALRYDGDQNPAPVVVAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  +NIP+ E+  LARSL+    +   IPP FY+AVA++I  +Y ++
Sbjct: 300 LKIREIAEANNIPVIEDRQLARSLYAATEVERMIPPEFYRAVAEIICYVYSRQ 352


>gi|27380920|ref|NP_772449.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA
           110]
 gi|27354086|dbj|BAC51074.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 359

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 193/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++ P+++TE P+ K++++AL  G+   S+E + +  I    + +  F       + +
Sbjct: 1   MAEDNDPESQTEDPTQKRLDEALERGDVAKSQEINTWFMIAGGTLVVSTFSGSVGSGLVT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  LLA++   K  D   ++ LL  +  +    +   LL+ ++  +   ++Q   V + 
Sbjct: 61  PMRNLLANSWMIK-TDGRALLALLQQIEFAVLAAIGVPLLMLVLAAVAGNMLQHRLVWSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F ++S   G KRI+      NF+K   K+I++G ++   L      M   +  +
Sbjct: 120 ESLKPKFSKLSPAAGFKRIFGKQAAANFLKGLGKLIVLGVVMGTILWPERHRMEAMVRLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++L         +L  ++  +A + + D  + Y  W+ + KMS QEIK+E KQS G+P
Sbjct: 180 PAAMLGATTSLTIHLLGAVVAALAIIAIGDYFFQYRSWFQRQKMSLQEIKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + + R + +MM A  +A++IITNPTH+++AL Y +    AP+ VAKG + +A
Sbjct: 240 HIKGKIRQLRQQRAKKRMMAAVPKASVIITNPTHFSVALSYERG-MQAPICVAKGVDNLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+IPI E   LAR+L+  V I+  IP   Y AVA++I  +   K
Sbjct: 299 FKIREIAREHDIPIVENVPLARALYATVEIDQEIPTEHYHAVAEVIGYVMRLK 351


>gi|121533743|ref|ZP_01665570.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans
           Nor1]
 gi|121307734|gb|EAX48649.1| flagellar biosynthetic protein FlhB [Thermosinus carboxydivorans
           Nor1]
          Length = 376

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 175/346 (50%), Gaps = 2/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K+ E+A  +G    S E      +LA    +    +     + S +  L +
Sbjct: 29  QEKTEEATPKRREEARKKGQVAKSVELGSALCLLAAFFTIKLTGTYIYEQLASYMQFLFS 88

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             T+  +   S   F L  L+L   ++V+P +L+ +   +    +Q     ++  +KP  
Sbjct: 89  RFTKEDMTIASSYRFFL-DLALIFLKIVLPIMLVILAVSLLVNFMQVGFTFSVEPLKPQL 147

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++   G++R++S  +LV  +KS  K+ ++   I   + E    +           L  
Sbjct: 148 SRINPLAGMQRLFSKRSLVELVKSLFKVAIISYFIYQFIIEETLNIALLSRLALRDSLAV 207

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  +   I + I  L +LD  + + +    LKM+KQE+K+E KQ+ GNP IK++ K
Sbjct: 208 IAALTFDLAFRIGVVILVLAILDYYYQWWEHNQNLKMTKQEVKEEFKQTEGNPQIKSKIK 267

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R+    +MM+   +A +++TNPTH+A+AL Y      AP+++AKGQ+ +A++++ +A
Sbjct: 268 ERQRALAMRRMMQEVPKADVVVTNPTHFAIALLYE-KTMTAPMVIAKGQDFMAERIKLVA 326

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E+ + I E  +LAR+L+  V I   +PP  YKAVA+++  +Y  K
Sbjct: 327 KENGVAIVENKALARALYDTVEIGETVPPELYKAVAEVLAYVYRLK 372


>gi|332994108|gb|AEF04163.1| flagellar biosynthesis protein [Alteromonas sp. SN2]
          Length = 376

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D+   KTE P+ KK+ED   +G    SRE S    ++      LF       SV  
Sbjct: 1   MADSDSS-EKTEDPTGKKLEDTRKKGQIARSRELSTTLVLVVSAFMFLFVGGWIAESVFK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +    ++ +  D +H+         + S  V+  + + M+ GI   +         
Sbjct: 60  LTQRMFV-LSRDETYDTTHMFGAWGEAISTVSVPVLLYMTVAMLAGIYGSIALGGYNFTW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              K    ++S   G KR++ +N LV  +KS  K++++  +   +L       L      
Sbjct: 119 EGAKFKGSKMSPLSGFKRMFGMNGLVELIKSIAKVVVIVGMALGALLFFEDEALHLDLEL 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   ++   IM++  +  + ++D+ +  ++   ++KM+KQE+KDE K S G+P
Sbjct: 179 YPGNIFHALDMLKWAFIMLVCGMIPIALIDVPYQIYKHNKEIKMTKQEVKDERKNSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R + +       +MM+   +A +++TNPTHY++A++Y  + N APV+VAKG + +A
Sbjct: 239 LVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHYSVAIKYDDSGNRAPVVVAKGTDELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +RKIA  +++P+   P LAR+++    I+  +P   + AVAQ++  +Y  K
Sbjct: 299 MHIRKIATANDVPLIPSPMLARAVYYSTEIDGEVPNALFMAVAQVLAHVYQLK 351


>gi|94500293|ref|ZP_01306826.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp.
           RED65]
 gi|94427592|gb|EAT12569.1| Flagellar biosynthesis pathway, component FlhB [Oceanobacter sp.
           RED65]
          Length = 375

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 181/352 (51%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE P+ ++++ A ++G  P S+E S    ++  ++ + +  +  ++S   
Sbjct: 1   MAENENSQEKTEEPTPRRLQKAKDDGQIPRSKELSTSLVLIVGVLSI-WLLADLLFSGAK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++        + ++ D   ++  L   +  A   + P ++L ++    + L     + + 
Sbjct: 60  NIFQYNFVIEREQIFDEKQMLKHLGASAYEAILTMTPTMMLILLAAALAPLALGGWMFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+S   G+KR++ + +LV  +KS+ K+++V     +        +L      
Sbjct: 120 KALLPKANRISPLSGLKRMFGVKSLVELIKSWAKVLVVIGCTFLLFFIFNDKVLFLHREP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  +   V     ++      ++V+D+ +  +++  K++MS QE+KDE K++ G P
Sbjct: 180 GTRAIADSADLVMLCAFILACSTLLVSVIDVPYQIYEYMQKMRMSLQEVKDEHKETEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MM+    A ++ITNPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKQRIRRLQYEMSQRRMMDDVKDADVVITNPTHYAVALKYDSDQMGAPLMVAKGTDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA ++ I + E P LARS++    I   IP   Y AVAQ++  +Y  
Sbjct: 300 LKIREIAKQNKIAVVEAPPLARSIYAFTKIGKEIPEGLYVAVAQVLAYVYQL 351


>gi|284007183|emb|CBA72471.1| flagellar biosynthesis protein FlhB [Arsenophonus nasoniae]
          Length = 383

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 170/353 (48%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   K E P+++K E A  EG    SRE S F  ++A  + L +      Y    
Sbjct: 1   MAE-ESDLEKNEEPTARKKEKAKEEGQVVRSRELSSFFMLIAG-VSLFWICGHSCYQKLH 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L        +  L +   +  L+          ++P +   ++    +        +N 
Sbjct: 59  ALFSQTFYFDKYILYNSQLLPNLVFESVKIGLNALLPIIAGLVLIAFAAPSFFGGIHINF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K  +K+++   G+KR++SIN L    K+ +K++LV   IT+ L  N       ++  
Sbjct: 119 KSIKFDWKKLNPITGLKRLFSINALAELFKALLKVMLVSIGITLFLWVNLPHFFHLVTEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L  A   +     + +  +  L   D+ +       KL+M++QEIKDE KQ  G+P
Sbjct: 179 RHLALSQATQLMIFAAYIAIFMLIPLVGFDLIYQLRSHLKKLRMTRQEIKDEFKQQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   R +MM    +A +IITNPTHYA+AL+Y      AP ++ KG  LIA
Sbjct: 239 HIKARIRQQQREISRRRMMADVPKADVIITNPTHYAVALQYDNQAMQAPKVLVKGAGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             ++++  E+ IP+ E P LAR+L++   +   IP   Y AVA+++  +Y  +
Sbjct: 299 LNIKQLGEENRIPVLEAPPLARALYRHSKVGGHIPATLYAAVAEVLAWVYQLR 351


>gi|120598263|ref|YP_962837.1| flagellar biosynthesis protein FlhB [Shewanella sp. W3-18-1]
 gi|120558356|gb|ABM24283.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
 gi|319427058|gb|ADV55132.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens 200]
          Length = 376

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 167/340 (49%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +L+      +   PGI +  S +   + +  + +
Sbjct: 13  PTGRRLEQAREKGQVARSKELGTAAVLLSAATGF-YMLGPGIATALSHVFERVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D + +  +   ++   +  ++  +LL ++      +       +   + P   ++S  
Sbjct: 72  IYDTNQMFNVWGLVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPL 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G KR++ +  LV   K   K  +V       L+  +  +L   S +    ++HA   + 
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLPGNVHHALDLLI 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R + + R  
Sbjct: 192 WMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A E+NI 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    ++  IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLR 351


>gi|146293659|ref|YP_001184083.1| flagellar biosynthesis protein FlhB [Shewanella putrefaciens CN-32]
 gi|145565349|gb|ABP76284.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
          Length = 376

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 167/340 (49%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +L+      +   PGI +  S +   + +  + +
Sbjct: 13  PTGRRLEQAREKGQVARSKELGTAAVLLSAATGF-YMLGPGIATALSHVFERVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D + +  +   ++   +  ++  +LL ++      +       +   + P   ++S  
Sbjct: 72  IYDTNQMFNVWGVVAGEIAWPMLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPKASKMSPL 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G KR++ +  LV   K   K  +V       L+  +  +L   S +    ++HA   + 
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYFLLSYYFNDILLLSSDHLPGNVHHALDLLI 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   +  + V+D+ +       +LKM+KQE+KDE K + G P +K R + + R  
Sbjct: 192 WMFILLCSSVLLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP HYA+A++Y    + AP ++AKG + +A K+R++A E+NI 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHYAVAVKYDVKRSAAPFVIAKGVDDVAFKIREVAREYNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    ++  IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQVLAYVFQLR 351


>gi|293604994|ref|ZP_06687390.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC
           43553]
 gi|292816599|gb|EFF75684.1| flagellar biosynthetic protein FlhB [Achromobacter piechaudii ATCC
           43553]
          Length = 384

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 184/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   K+EA S +++E A  EG    SRE   F  + A +  +          ++ 
Sbjct: 1   MAE-ESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVGVIWAGGGSLYRGLSG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  LA   QR + D   +V         A   ++P   +  +  + S ++    V++ 
Sbjct: 60  VLHNGLA-FDQRIVTDPGVMVEQAVIGFGHALLALLPVFGVLAVVAVLSSVLLGGIVISG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++ +F ++SL  G+KR++S   +V  +K+  K +LVG +    +   +  ML  +   
Sbjct: 119 KPLQANFSKLSLFAGLKRMFSSQTVVELIKALAKALLVGGVAVWVIWRYHDDMLGLMHVA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L  A   V     +I+  +  + +LD+ W       KL+MSK++++ E K+S G+P
Sbjct: 179 PSAALIKALSLVAICCALIVASLLVIVLLDVPWQIFSHLKKLRMSKEDVRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R   R +MM    RA +++TNPTHYA+AL+Y + ++ AP ++AKG  LIA
Sbjct: 239 HVKARIRQQQRQAARRRMMSEVPRADVVVTNPTHYAVALKYDEDKSGAPRVIAKGTGLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A E+ IP  E P LAR+L + V +   IP   Y AVA+++  ++  +
Sbjct: 299 AKIRELAAENRIPTLEAPPLARALHQHVELGKEIPAELYTAVAEVLAWVFQLR 351


>gi|261855327|ref|YP_003262610.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus
           c2]
 gi|261835796|gb|ACX95563.1| flagellar biosynthetic protein FlhB [Halothiobacillus neapolitanus
           c2]
          Length = 379

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE PS K++ +A  +G    SRE    +      I  L      +  +  
Sbjct: 1   MAENENGQEKTEEPSEKRLREAREKGQVARSRELGSLALTAGSAIVFLVMGGHMLSRL-E 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + ++ ++ D + +   L          ++P  L  ++  + S L+      + 
Sbjct: 60  QMFRHAFTLSRAEIMDPATMFHRLALSFSEGFLALLPFFLAAVVLAVSSTLLVGGWNFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G KR++S+ +LV  +K+  K  L+  I            +      
Sbjct: 120 QALAPQFNRLNPLSGFKRMFSMKSLVELLKTLAKFFLIAAIAIGLFEAMEKDFVGLGLMG 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   +    + + L +  + ++D+ +  +++   L+M++QE+ DE K+  G P
Sbjct: 180 LEAGLARAGTLLSWSFLGLSLGLLVVAMIDVPFQMYEYKKGLRMTRQEMIDEYKEVEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MMEA   A +IITNPTH+++AL+Y    + AP++VAKG + +A
Sbjct: 240 EVKQKIRQLQRQMAQRRMMEAVPTADVIITNPTHFSVALKYQPNSDAAPMVVAKGADEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +RKIA  +++P+FE P LARSLF  V +  AIP   Y AVAQ++  ++  K
Sbjct: 300 MTIRKIANANHVPLFESPQLARSLFAHVEVGDAIPSGLYVAVAQVLAYVFQMK 352


>gi|83309718|ref|YP_419982.1| flagellar biosynthesis protein FlhB [Magnetospirillum magneticum
           AMB-1]
 gi|82944559|dbj|BAE49423.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1]
          Length = 355

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 202/353 (57%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+   D+KTE P+ +K+  A  +GN P S+E  +++S++  L+ +  F       +  
Sbjct: 1   MAED--SDDKTEEPTDRKLSQAREQGNIPTSQEVKIWASLVGALVVVTLFAPYMARDIGR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   +       +     +  LL+ +++   +L+I  +++ ++  I S + Q   +   
Sbjct: 59  LLLPFVEHPHAFPM-GREDVGQLLSGITVDMIKLLIMPMMMLVVLAIASAMGQSGLMFLP 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +   F ++S  +G++RI+S  NLV F+KS  K+  +G +I + L  +        + +
Sbjct: 118 DKLTLDFGKLSPGKGLQRIFSGRNLVEFVKSLFKVSAIGFVIFLILKSHMSEYAGLAALD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L +    V  ++I+++L +  L   D  +    +  ++KM+KQEIKDE KQ+ G+P
Sbjct: 178 LMAVLDYLRHQVITMIIVVVLMVFVLAAADWFYQRWAFTQQMKMTKQEIKDEHKQTEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +++   R R +MM A  RA++++TNPTHYA+AL+Y Q    APVLVAKG +LIA
Sbjct: 238 MIKGRLRALRMQRARQRMMAAVPRASVVVTNPTHYAVALQYDQDSMGAPVLVAKGVDLIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K++R +A E+ +PI E P LAR+L+  V ++  IPP  YK VA++I  +   K
Sbjct: 298 KRIRDLATENEVPIVENPPLARALYATVELDQEIPPEHYKTVAEIIGYVMKLK 350


>gi|188581880|ref|YP_001925325.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
 gi|179345378|gb|ACB80790.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
          Length = 355

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 193/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    ++KTE P+ ++IE A+  G+ P S E + F  + A  + L+    P    +T 
Sbjct: 1   MADESDDEDKTEDPTPRRIEQAIERGDVPNSPEINTFFILAAFTLALMLSAKPMAEGLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   L  A     +  +++   L    + A  L +P L + M+  I + LIQ  P+   
Sbjct: 61  DMRGFLEHAGSIPSDAGTYLGVALRAGWVCAKALAVP-LGIAMLAAIAAGLIQHRPIFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+S   G KR+   +  VNF K   KII+VGTI    L   +     F   +
Sbjct: 120 ESLMPKFARISPMAGAKRLLGTDAWVNFGKGLAKIIVVGTIAGAILWNEHDRAESFAQLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + L        K++  +L   A + + D  +  H+W+++L+M+K+E+K E K+S G+P
Sbjct: 180 PGAALQGTLTLALKMMGGMLAAYAAIALGDALYQRHRWHTRLRMTKEEMKQEHKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + ++R++ +MM A   AT+++TNPTHYA+ALRY      APV VAKG + +A
Sbjct: 240 EVKARIRQLRQARVKKRMMAAVPTATVVVTNPTHYAVALRYETG-MAAPVCVAKGVDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A +H++P+ E P LAR+L   V +++ IP   Y+AVA++I  +   +
Sbjct: 299 LRIRAVAADHDVPVLENPPLARALHATVEVDAEIPAEHYRAVAEVIGFVLRLR 351


>gi|328543170|ref|YP_004303279.1| flagellar biosynthesis protein B [polymorphum gilvum SL003B-26A1]
 gi|326412916|gb|ADZ69979.1| Flagellar biosynthesis protein B [Polymorphum gilvum SL003B-26A1]
          Length = 359

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ K++++A  +G+ P S+E S + ++    + +  F       + +
Sbjct: 1   MADDTDDSEKTEDPTQKRLKEAHEKGDLPKSQEVSTWFTLAGAAMMIALFAPAVTTELGT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L  A +    D   +  L      S + +V   LL  +   +   L+Q   V   
Sbjct: 61  QLKWYLEHAHEIP-ADGYALKALWRDTGQSVALIVGLPLLALVAMAVAGNLVQHEAVFTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   +VS   G KR++S  +L+NF K  +KI++VG ++   L          I  +
Sbjct: 120 EPIKPKLSKVSPLSGFKRLFSGQSLMNFAKGMLKIVIVGAVMVAVLWPQRDRAEAVIFVD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S+L  A   V ++L  +L  +  +   D  W  H+W+ K KMS +E+K+E KQ+ G+P
Sbjct: 180 VSSLLEEARGLVLQLLAAVLAIMTVVAGADYVWQRHKWFEKQKMSMRELKEEYKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K + + +   R R +MM A  +AT+++TNPTHYA+ALRY +    AP+ VAKG + IA
Sbjct: 240 LVKGKIRQLRMERSRKRMMAAVPQATVVVTNPTHYAVALRYEEG-MGAPLCVAKGTDAIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A +H +P+ E P LAR+L+  V ++  IP   YKAVA++I  ++  +
Sbjct: 299 LKIREVARQHEVPVVENPPLARALYASVDVDREIPEDHYKAVAEVIGFVFRMR 351


>gi|254420201|ref|ZP_05033925.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3]
 gi|196186378|gb|EDX81354.1| flagellar biosynthetic protein FlhB [Brevundimonas sp. BAL3]
          Length = 358

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 100/355 (28%), Positives = 188/355 (52%), Gaps = 2/355 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++  P++KTE  + +K+EDA  +G+   S++     S+      +L        S+  
Sbjct: 1   MADDTDPESKTEDATPRKLEDARKKGDVAKSQDVGQVLSLAGAAAVILGAGGWFAGSMAQ 60

Query: 61  DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L   +A+  Q   + D      +L     + +  +   +L  ++ G G +L Q   +  
Sbjct: 61  QLLPFIAAPHQMLGMLDSGAGAQILAQALWAMTPFLGAVMLATIIGGAGGHLAQSGLIFT 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP +  V+   G KRI+  + L+ F+K+F+K+I V  +  + L  +     + ++ 
Sbjct: 121 AEKLKPKWSSVNPMSGFKRIFGPDGLMQFVKTFLKLIAVCVVCWMVLKPHVREFENMVTL 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P ++L  A      + +  ++ +      D  W   ++  +++M+K+E+K++ KQS G+
Sbjct: 181 SPAALLPLARDMALALFVAAIILLGATAGADFIWQKMRFAKRMRMTKEELKEDYKQSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNL 298
           P IK + K I   R R +MM    +AT+I+TNPTHY++ALRY     + APV VAKG + 
Sbjct: 241 PHIKAKLKQIRMQRSRQRMMANVPKATVIVTNPTHYSVALRYEPSEGDGAPVCVAKGVDA 300

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A ++R++A EH +PI E   LAR+L+  V I++ IP   ++A A++I  ++  +
Sbjct: 301 LAMRIREVAKEHGVPIVENVPLARALYASVEIDAVIPKEHFEAAAKIIGFVFQSR 355


>gi|253573537|ref|ZP_04850880.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847065|gb|EES75070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 363

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 178/346 (51%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK ++A  +G    S+E +    ++A  + L  F       +      +  
Sbjct: 14  GEKTEKATPKKRQEARKKGQVAKSQELTGALLLMAGFLCLTAFAGYFKDRLIGLFVDVFY 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                ++   ++++ ++   ++    L+ P  L+ ++  + +   Q   +L    +K  F
Sbjct: 74  HRLSMEVTK-TNVMAMMGEYAVQVLLLLAPIFLVVIVVAVVANYAQIGFMLVGEPLKIKF 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++   +G K I+S+ +LV F+K+  K++++G ++  ++     ++      +     + 
Sbjct: 133 SKLDPIKGFKNIFSMRSLVQFVKTLFKLLIIGYLVYSTIWGYRGSLSALGHVSVDDTFHF 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + + I   +  L VLD  +  ++    LKMSKQ+IKDE K+  G+P+IK + +
Sbjct: 193 TAQLTMNLGLKIAAALIVLAVLDYMYQRYEHEKNLKMSKQDIKDEYKKMEGDPLIKGKIR 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTH+A+AL+Y  ++ DAP ++AKGQ+ +A ++++IA
Sbjct: 253 ERQRRMALQRMMQEVPKADVIITNPTHFAVALKYDGSKMDAPQVIAKGQDYVALRIKEIA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH +   E   LAR+LF++  I   IP   ++AVA+++  +Y  K
Sbjct: 313 KEHGVITMENKPLARALFQRTEIGDTIPADLFQAVAEVLAYVYRIK 358


>gi|27885003|gb|AAD56298.2| FlhB [Pseudomonas putida]
          Length = 380

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 104/354 (29%), Positives = 179/354 (50%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +     L     LL F      ++  
Sbjct: 1   MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVVLTLGGAGALLTFGGHLAETLL- 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +  S T+  + D   +   L      A   V P L L  +  +   +     + + 
Sbjct: 60  TLMRMNFSLTRDVIVDERAMGAFLLASGKMAIWAVQPVLGLLFVLALIGPVALGGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R+S   GIKR++S+N++   +K+  K  ++  +  + L+ +   +L   +  
Sbjct: 120 SLLQPKFSRMSPLSGIKRMFSLNSVTELLKAVAKFFVILVVALVVLSHDRQALLAIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + HA   V    + +   +  +  +D+ +   Q   KLKM+KQE++DE K S G P
Sbjct: 180 LEQAIIHAVQVVGWSALWMAAGLLLIAAVDVPFQLWQTQQKLKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+I  EH + I E P+LAR+++    I   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353


>gi|296330853|ref|ZP_06873328.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674371|ref|YP_003866043.1| flagellar export machinery protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151858|gb|EFG92732.1| flagellar biosynthesis protein FlhB [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412615|gb|ADM37734.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 360

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D   +G    S + +   S+L   + L+         + S L     
Sbjct: 12  GEKTEKATPKKRKDTRKKGQVAKSADVNTAVSLLVIFLSLIAIGPFMRDRLLSFLETFYT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +   KL + +++  L   L    + ++ P +L+ ++ G+ S  +Q   + +   ++P  
Sbjct: 72  ESLTMKLSE-ANVHTLFISLLKDTAFVLAPIMLVALVAGVVSNYMQVGFLFSAEVIQPKL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRIYS+  +V  +KS +KI +VG      L  +Y  +L      P   L  
Sbjct: 131 EKLDPIKGFKRIYSMRAIVELIKSILKITVVGFAAFAVLWLHYGEILRLPLLTPEEALSF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   +KMSKQ+IKDE K+S G+PIIK++ K
Sbjct: 191 VSKLTLWMGLSGAGALLLLAGLDYLYQRFDYEKNIKMSKQDIKDEYKKSEGDPIIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG + +A K+RKIA
Sbjct: 251 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYIVAKGVDHLALKIRKIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++ + E   LAR+L+ QV I+ A+P  F+K +A+++  +Y  K
Sbjct: 311 KEHDVMMVENRPLARALYDQVEIDQAVPEEFFKVLAEILAYVYKTK 356


>gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium
           ljungdahlii DSM 13528]
 gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium ljungdahlii DSM 13528]
          Length = 606

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 186/348 (53%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  D+  +G    S+E  L  ++LA  + +         S+ S +   
Sbjct: 261 AKDDKTEEATPKKKSDSRKKGQIARSKEIGLTMTLLASTLVIAVLGGYVGTSLGSTMVAF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L       L + S +  ++       + + +P  +  +  G+ + ++Q   ++    +KP
Sbjct: 321 LNDYINTSL-NYSSVNKIMFITIWRIAIVFLPIAVPILAIGVLANMVQTRGLITFETLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F +++   G KR++S  +++  +K    + +VG +    + +NY  +L+    +  ++ 
Sbjct: 380 DFSKLNPISGFKRMFSARSVMELLKDTAIVSIVGYVGYKFIKDNYMYILNLGQLDSRAVA 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   I L +  + +LD  +  +Q+   L+MSKQEIK+E KQ  G+P IK +
Sbjct: 440 KAIGSLAVGIFFRITLIMLIIAILDYMFQRYQYNKDLRMSKQEIKEEFKQDEGDPQIKGK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   R     +MM+   +AT+++TNPTH A+AL+Y + +N APVLVAKG + +A K+++
Sbjct: 500 RRQKQRELAMRRMMQEVPKATVVVTNPTHVAVALKYEEGQN-APVLVAKGLDAVALKIKE 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA ++++PI E   LAR ++K+V I+  IP   Y+AVA+++  +Y  +
Sbjct: 559 IAKDNDVPIIENRPLARLIYKEVEIDMEIPAEMYQAVAEILALVYKMR 606


>gi|317133470|ref|YP_004092784.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense
           YUAN-3]
 gi|315471449|gb|ADU28053.1| flagellar biosynthetic protein FlhB [Ethanoligenens harbinense
           YUAN-3]
          Length = 356

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M E  A D KTE  + K+ ED   +G+   S + +   ++L     L       I S++ 
Sbjct: 1   MPEASAGD-KTEKATPKRREDERKKGHVVQSPDVTSAVAMLGTFAVLRVMGPSMIKSLSD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +LA+ T   +     +   +T        + +P +L+     + + L Q   +++L
Sbjct: 60  GMRGMLANLTS-AVSGYEDMRARMTAALSVLIGVAVPVMLVAFAATVATTLAQTRLLVSL 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP   R++  EGIKR++S+ +LV   KS +K++LVG ++   +     T+L   + +
Sbjct: 119 DQLKPDLSRLNPLEGIKRLFSVRSLVELGKSILKVVLVGAVVYFEIQPQMHTILLLYNMS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      +  + I +   +  L  +D  + + Q+   ++M+K+EIK+E KQ  GNP
Sbjct: 179 LAQSFSWVAGILADIGIKVAGVMLLLGAIDYFYQWFQYEKDIRMTKEEIKEEYKQMEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + K++ R   R +MM+   +A +++ NPTH+A+AL+Y   +  APV VAKG+N +A
Sbjct: 239 EIKGKIKNLQRQMARRRMMQDVPKADVVLRNPTHFAVALKYEHGKQRAPVCVAKGRNAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +IA E+++ I E+P L R+L++ V +   IP  FYKAVA+++  IY  +
Sbjct: 299 LRIVEIAEENHVYIREDPPLTRALYQAVEVGGQIPAEFYKAVAEVLAYIYKLR 351


>gi|323496542|ref|ZP_08101596.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326]
 gi|323318386|gb|EGA71343.1| flagellar biosynthesis protein FlhB [Vibrio sinaloensis DSM 21326]
          Length = 376

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F      ++ +
Sbjct: 1   MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVSLMWFGESLARALFT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  + ++ ++ D   +  L      S    +I  L+   +  +           ++
Sbjct: 60  VMERLF-TLSREEIFDQVKLFDLALGSLTSLILPLILILVTLFIAAVAGAAGVGGISFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P + +++   G+KR+  + + V  +KS +K+ LV  +    +      +       
Sbjct: 119 EAAMPKWSKMNPLSGLKRMVGLQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++H+   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++ G P
Sbjct: 179 FPQNIFHSLDILLNFILLISCTLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNSDRAPIVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351


>gi|15642119|ref|NP_231751.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|147674451|ref|YP_001217641.1| flagellar biosynthesis protein FlhB [Vibrio cholerae O395]
 gi|153818990|ref|ZP_01971657.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457]
 gi|153822901|ref|ZP_01975568.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33]
 gi|227082245|ref|YP_002810796.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2]
 gi|229507795|ref|ZP_04397300.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286]
 gi|229511968|ref|ZP_04401447.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33]
 gi|229519104|ref|ZP_04408547.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9]
 gi|229607340|ref|YP_002877988.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236]
 gi|254849205|ref|ZP_05238555.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10]
 gi|298497858|ref|ZP_07007665.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757]
 gi|9656670|gb|AAF95265.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126510485|gb|EAZ73079.1| flagellar biosynthetic protein FlhB [Vibrio cholerae NCTC 8457]
 gi|126519597|gb|EAZ76820.1| flagellar biosynthetic protein FlhB [Vibrio cholerae B33]
 gi|146316334|gb|ABQ20873.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395]
 gi|227010133|gb|ACP06345.1| flagellar biosynthetic protein FlhB [Vibrio cholerae M66-2]
 gi|227014016|gb|ACP10226.1| flagellar biosynthetic protein FlhB [Vibrio cholerae O395]
 gi|229343793|gb|EEO08768.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC9]
 gi|229351933|gb|EEO16874.1| flagellar biosynthesis protein FlhB [Vibrio cholerae B33]
 gi|229355300|gb|EEO20221.1| flagellar biosynthesis protein FlhB [Vibrio cholerae BX 330286]
 gi|229369995|gb|ACQ60418.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MJ-1236]
 gi|254844910|gb|EET23324.1| flagellar biosynthesis protein FlhB [Vibrio cholerae MO10]
 gi|297542191|gb|EFH78241.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MAK 757]
          Length = 376

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|238924151|ref|YP_002937667.1| flagellar biosynthesis/type III secretory pathway protein
           [Eubacterium rectale ATCC 33656]
 gi|238875826|gb|ACR75533.1| flagellar biosynthesis/type III secretory pathway protein
           [Eubacterium rectale ATCC 33656]
 gi|291524884|emb|CBK90471.1| flagellar biosynthetic protein FlhB [Eubacterium rectale DSM 17629]
          Length = 382

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 183/355 (51%), Gaps = 5/355 (1%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL---LFFFSPGIYSV 58
           +++     KTE  + KK++DA  EG    S+E +    ++   + L   + F    +  +
Sbjct: 25  AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84

Query: 59  TSDLHVLLASATQRKLEDISHI--VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            S ++  +    +   E IS +     L ++ L     V+P     ++  I   +IQ   
Sbjct: 85  FSTVYKKMPDFLKESQEQISSVSVTHYLNNVILQFLLTVLPFFAFGVVITILVSIIQVGF 144

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
            ++   + P   + +   G KRI S +++   +KS +K+ ++  +   S+  +   +   
Sbjct: 145 KISTKPMAPKLSKFNPINGFKRILSKDSIFELLKSVLKVGIIMYVAYSSVKSHQNDIFIL 204

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                   +      +    + I +    + + D  ++ H++ + +KM+KQE+KDE K +
Sbjct: 205 YELPLKQAIVLIGDIIINTGLKISIVYMIVGIADFAYNKHKFNNDMKMTKQEVKDEFKNT 264

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK +Q+   +   + +MM+   +A ++ITNPTH+A+A++Y   +NDAPV+VAKGQ
Sbjct: 265 EGDPAIKGQQRKRMQEASQRRMMQDVPKADVVITNPTHFAVAVKYDAQKNDAPVVVAKGQ 324

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A+K+++IA ++NI I E   LAR LF  V + + IPP  Y++VA+++  IY 
Sbjct: 325 DYVAQKIKEIARDNNIHIVENKPLARMLFHNVDLGAEIPPELYRSVAEILAMIYK 379


>gi|261252335|ref|ZP_05944908.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891]
 gi|260935726|gb|EEX91715.1| flagellar biosynthesis protein FlhB [Vibrio orientalis CIP 102891]
          Length = 376

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   I L++F      ++ +
Sbjct: 1   MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGSIALMWFGESLARALFT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D   +  ++     S    ++  L+   +  +           ++
Sbjct: 60  VMSRLF-SLSREEIFDHVKLFDIVVGSIGSLILPLLLILVTLFVAAVVGAAGVGGVSFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  + + V  +KS +K+ LV  +    ++     +       
Sbjct: 119 EAAMPKASKMNPLSGLKRMVGMQSWVELIKSILKVALVSGMAFYLISAAREDLFQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K++ G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCTLLIVAAIDIPFQIWQHADQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQDTDKAPIVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREVAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQILAYVFQLK 351


>gi|327399034|ref|YP_004339903.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411]
 gi|327181663|gb|AEA33844.1| flagellar biosynthetic protein FlhB [Hippea maritima DSM 10411]
          Length = 353

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 100/347 (28%), Positives = 187/347 (53%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            ++KTE  + K+ ++A  EG    S E +    +LA +++  F  S     +   L    
Sbjct: 3   DEDKTEQATPKRRQEAREEGRVAKSVELNTAFLMLAAVVFFYFTASNFGEKIKDVLIYFF 62

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A+  ++  +     L+  +S     +++P  ++         ++Q    +    ++  
Sbjct: 63  TLASNFEI-TLDSFDILVKRISGFMFSILLPFFIVMATIAFLINVVQVGFYITPKAMEIK 121

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F +++   G K ++S+ +    +KS +K  ++G I+ I + +N  +       N  ++  
Sbjct: 122 FDKINPVNGFKNMFSLRSFGELVKSLLKASVMGYILWIFIQKNINSWSSLSKTNQTAVFL 181

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
               ++  V++ IL+FI  + +LD  +  + +   + M+KQE+KDE KQ  G+P IK + 
Sbjct: 182 VMIKSMFLVVVYILIFIIFMAILDYLFQKYTFEKSIMMTKQEVKDEYKQMEGDPKIKQKI 241

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +S+     R +MME   +A ++ITNPTHYA+AL+Y      AP +VAKG NLIAKK+++I
Sbjct: 242 RSMQMEMTRKRMMEEVKKADVVITNPTHYAVALKYDSATMAAPKVVAKGINLIAKKIKEI 301

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E+++PI E+P LARSL+++V ++  IP   Y+AVA+++  ++  K
Sbjct: 302 AKENDVPIVEKPELARSLYEKVKLDREIPEELYQAVAEILAYVFKLK 348


>gi|310764894|gb|ADP09844.1| Flagellar biosynthetic protein FlhB [Erwinia sp. Ejp617]
          Length = 381

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  ++ + KTEAP+  +I  A  EG  P S+E +    +L     +L      + S+ S
Sbjct: 1   MS-QESDNEKTEAPTPSRIAKAREEGQIPRSKELTTLLMLLVGWGLMLCSGGNLVRSLQS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  L    +  + D + ++   + L   A   ++P +   ++  + +  +    +L+ 
Sbjct: 60  LLHNALI-FDRLLVLDPAQMLQRSSSLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K+++   GIKR++S       +K+ +K++L      + L  N    +  I   
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATIGGGLYLLLNKEKFIRLIFEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   L+ +++ +  +   D+ +  +  + KL+MS+QEIKDE K+  G+P
Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R+  + +MM     A +I+ NPTHY++AL+Y      AP +VAKG  L+A
Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  H +P+ E P LAR+L++   I + IP   Y AVA+++  +Y  +
Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351


>gi|304311113|ref|YP_003810711.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
 gi|301796846|emb|CBL45058.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
          Length = 375

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 186/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    KTE  + +K+E A  +G  P SR+    S ++   I +L +    IY    
Sbjct: 1   MADED-GQEKTEDATPRKLEQAYEKGQTPRSRDLVAVSMLIIGGIGMLLYVEQ-IYRAFV 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +  +  + K+ D S ++  L   + +A + ++P      +  I + +      ++ 
Sbjct: 59  TAFEMGFTFDREKIFDDSAMMRALLQAAYAAGKSLLPLFATLAVVAIAASVASGGLHVSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +   F++++   GIKR++S+ +LV  +KS +K+ LVG    + +   +   L  I   
Sbjct: 119 HPLMFKFEKLNPLSGIKRMFSLQSLVELIKSIMKVSLVGFTAWLVVKAQFAEYLGLIDEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + + L +A +  +D+ +   Q+  +L+M+KQE+KDE K S G P
Sbjct: 179 IQQAMLHSISMVAWAFVWLSLSLALVAAIDVPYQNWQFRKQLRMTKQEVKDEYKDSEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK +Q+  AR      MM    +A ++ITNPTH+A+ALRY  T+  AP LVAKG +LIA
Sbjct: 239 EIKAKQRQRAREMAFAGMMAEVPKADVVITNPTHFAVALRYDPTKGGAPKLVAKGADLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++++A  +N+ I   P LARS+F    +   IP   Y AVAQ++  +YH K
Sbjct: 299 EQIKRVAIANNVVILAAPPLARSIFYHTKLFKEIPSGLYVAVAQVLAYVYHLK 351


>gi|254470232|ref|ZP_05083636.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
 gi|211960543|gb|EEA95739.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
          Length = 358

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 187/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+     KTE P+ K+++DA  +G+ P S+E S + S++   + + F     + SV++
Sbjct: 1   MAEDTDDSEKTEDPTQKRLDDAFEKGDIPKSQEVSSWFSLVGTALVISFLAPTMVSSVST 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A A    + D   +VFLL         +V   LL  M   +   ++Q  P+   
Sbjct: 61  ILKGFFAHADTIAV-DPGALVFLLEITGPEILGVVALPLLTLMALAVVGNVVQHKPLWTA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++S   G+KR++S ++L NF+K  VKII V   + + L      +   +   
Sbjct: 120 ERLKPKLNKISPLSGMKRLFSKDSLANFLKGLVKIIAVAAAVFLVLWPERDRLDTVVFRE 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L         V+  IL  +  +   D+ W   +W+ K KM++QE+K+E KQS G+P
Sbjct: 180 TGLVLEEVRELAIMVIGAILALMTVVAGADLVWQRKKWFEKQKMTQQEVKEEYKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +   R R++MM +   AT++ITNPTHYA+AL Y +    AP  VA G + +A
Sbjct: 240 KIKAKIRELRLQRSRNRMMASVPDATVVITNPTHYAVALSYEEG-MGAPQCVALGVDDLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E ++PI E P LAR+L+  + +N  +P   Y AVA++I  +   +
Sbjct: 299 LRIREVAKESDVPIVENPPLARALYASIELNDYVPEEHYAAVAKVIGYVMQLR 351


>gi|330828812|ref|YP_004391764.1| flagellar biosynthetic protein FlhB [Aeromonas veronii B565]
 gi|328803948|gb|AEB49147.1| Flagellar biosynthetic protein FlhB [Aeromonas veronii B565]
          Length = 376

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 85/354 (24%), Positives = 169/354 (47%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    +TE P+ K+++ A  +G    S+E    S +L+ +  LL        ++  
Sbjct: 1   MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASVLLSAVFGLLMLKGSLATAMIK 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + +   +  + +  D + ++ ++  L       +     L  +       +      + 
Sbjct: 59  VVTMGF-TLDREQAFDPNAMIAMVPALLGELVLPLGLLFALVAIAAFIGNTLMGGMNFST 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++S   G+KR++ + +L+  +KS  K++ +       L+  +  +L+     
Sbjct: 118 EAMMPKMSKLSPLSGLKRMFGVQSLIELVKSIAKVVFITLFAWWMLSSQFNHLLNLSMEG 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A      +LI++   +  +  +D+ +       +LKM+KQE+KDE K S G P
Sbjct: 178 FPGGIIDALELFLWMLIILCCALLPIVAIDVPFQQWNHMRQLKMTKQEVKDEFKDSEGKP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLI 299
            +K + + +       +MM    +A ++ITNPTHY++AL+Y   +   AP +VAKG + I
Sbjct: 238 EVKGKIRQLQMQMAMRRMMGDVPKADVVITNPTHYSVALKYDAGKPGAAPKVVAKGTDEI 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+IA E+ IPI   P+L R+++    +   IP   + AVAQ++  ++  K
Sbjct: 298 AMKIREIAREYEIPIMPSPALTRAIYHSTELGHEIPEGLFAAVAQVLAYVFQLK 351


>gi|260886652|ref|ZP_05897915.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
 gi|330839517|ref|YP_004414097.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
 gi|260863795|gb|EEX78295.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
 gi|329747281|gb|AEC00638.1| flagellar biosynthetic protein FlhB [Selenomonas sputigena ATCC
           35185]
          Length = 366

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 175/346 (50%), Gaps = 3/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P++K+  DA  +G    S+E S    +LA    +    S  +  + +    + A
Sbjct: 19  GEKTEEPTAKRRNDARQKGQVARSQELSGAFVLLAGFFVMRALGSTILTEIETYTVHIYA 78

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +  Q    D   ++ L+    +  ++   P ++  ++ G+     Q   +     +    
Sbjct: 79  NMNQ--TVDAETVMRLIIDGMIVLAKTAFPVMIAILVMGLAINFYQVGFMFTTEPLSFKL 136

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++   G  RI+S  ++V  +KS +KI ++G  + + L+     M +FI  +  S +  
Sbjct: 137 DKLNPITGFGRIFSKRSIVELLKSLLKIAIIGAFLYVYLSGEIMHMPEFIYLDLKSSMAR 196

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  ++  I++    +   D  +   Q    LKMSKQ+IK+E KQ+ G+P IK + +
Sbjct: 197 MGDIIFSLVFQIIIVYFVMAAADFAYQKWQTTQDLKMSKQDIKEEFKQTEGDPQIKGKIR 256

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +    ++MM+    A +I+TNPTHYA+AL+Y      AP +VAKGQ+L+A+K++ IA
Sbjct: 257 QKQQQMAMNRMMKEVPEADVIVTNPTHYAVALKYKAG-MKAPEVVAKGQDLVAQKIKDIA 315

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH + I E   LAR+L+  V +   +PP  Y+AVA+++  +Y  K
Sbjct: 316 REHRVTIVENKPLARALYAAVDVGGIVPPELYQAVAEVLAYVYRLK 361


>gi|152980271|ref|YP_001353777.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp.
           Marseille]
 gi|151280348|gb|ABR88758.1| FlhB flagellar biosynthetic protein [Janthinobacterium sp.
           Marseille]
          Length = 402

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 166/350 (47%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++   KTE  S +K+E A  +G+ P SRE +  + +L             +  +   L 
Sbjct: 15  EESDLEKTEPASPRKLEQAREQGDVPRSRELATCTLLLGAGAAFWILGGRMVGELNKMLA 74

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L S  +    D+  ++       +       P  L+ ++  + S  +    + +   +
Sbjct: 75  AGL-SFDREMAFDMELLLAHAAASIIDLLIAFAPAALILIVVALISPALIGGWLFSGKAL 133

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P+F R++  +G+  + S    V   K+  K IL+G I  + +   +  ++        S
Sbjct: 134 QPNFGRMNPIKGLGNMVSSRAAVELGKAIAKTILIGWIAWMVMRHEFDAVMALSVEPLKS 193

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
              H    +    I I   +  +  +D  +   Q   KL MS+Q+++ E K+S GNP IK
Sbjct: 194 GTEHLGHLLVFSFIFIAAGLVIVAAIDAPYQMWQHAKKLMMSRQDVRQESKESEGNPEIK 253

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            + +   R   R +MM     A +++TNPTHYA+AL+Y +    AP +VAKG + +A K+
Sbjct: 254 AKIRQQQREMARRRMMAEVPTADVVVTNPTHYAVALKYSENGMRAPRVVAKGADEVAAKI 313

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A E+N+ + E P LAR+LF+   +   IP   Y AVA+++  ++  +
Sbjct: 314 RELAMENNVVLLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLR 363


>gi|121727196|ref|ZP_01680363.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52]
 gi|153828614|ref|ZP_01981281.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39]
 gi|262191369|ref|ZP_06049559.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93]
 gi|121630441|gb|EAX62834.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V52]
 gi|148875885|gb|EDL74020.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 623-39]
 gi|262032744|gb|EEY51292.1| flagellar biosynthesis protein FlhB [Vibrio cholerae CT 5369-93]
          Length = 376

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|239997097|ref|ZP_04717621.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126]
          Length = 374

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ KK+EDA  +G    SRE S    ++      LF       SV  
Sbjct: 1   MADSS---EKTEDPTGKKLEDARKKGQLARSRELSTTLVLIVSAFMFLFVGGWIAESVFK 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +    ++ +  DI+H+         +    V+  +++ M+ GI   +         
Sbjct: 58  LTQRMFI-LSRDETYDITHMFGAWGEAFSAVGPTVLLYMVVAMIAGIYGSIALGGFNFTW 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              KP   ++S  +G KR++ +N LV  +KS  K++++  +   +L       L      
Sbjct: 117 EGAKPKGSKMSPIQGFKRMFGMNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMEL 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   ++   ++++  +  + ++D+ +  ++   ++KM+KQE+KDE K + G+P
Sbjct: 177 YPGNIFHALDMLKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R + +       +MM+   +A +++TNPTH+++A++Y +    APV+VAKG + +A
Sbjct: 237 MVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGVRAPVVVAKGADELA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +RKIA  +++P+   P LAR++F    ++  IP   + AVAQ++  +Y  K
Sbjct: 297 MHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349


>gi|312962260|ref|ZP_07776752.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
 gi|311283597|gb|EFQ62186.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
          Length = 378

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 174/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  ++++A    LL +       +  
Sbjct: 1   MAESESGQDKTEDPTEKRKKDSREKGEIARSKELNTVATMMAGSGALLIYGGGLALDLLE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S  +  L +   +   L H    A   V P L+  ++  +   +     +   
Sbjct: 61  LMKHNF-SLPREVLLNPDSMGQYLMHSGKIALLAVQPILITLLLAALIGPVALGGWLFAA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S   LV  +K+  K IL+  +    L+ +   +L      
Sbjct: 120 GSMAPKFSRMNPAAGLKRMFSAKALVELLKALAKFILILFVALSVLSSDVDDLLRIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S + H+   V    + +   +  +  +D      + + KL M+KQE++DE K   G P
Sbjct: 180 LESAIIHSVQVVGWSALWMSAGLIIIAAVDAPIQLWESHKKLLMTKQEVRDEHKDQEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + KMM A   A ++ITNPTHYA+AL+Y   +  AP+L+AKG +  A
Sbjct: 240 EVKQRIRQLQREMSQRKMMAAVPDADVVITNPTHYAVALKYDPEKGGAPMLLAKGSDFTA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  + I + E P LARS+F    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAVANEILLLESPELARSIFYSTDLDHEIPAGLYLAVAQVLAYVYQIR 352


>gi|194014696|ref|ZP_03053313.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061]
 gi|194013722|gb|EDW23287.1| flagellar biosynthetic protein FlhB [Bacillus pumilus ATCC 7061]
          Length = 362

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D+  +G    S + +   S L   +   F        + + +    +
Sbjct: 14  GEKTEKATPKKRQDSRKKGQVAKSTDVNTAISFLLIFLSFFFIGPFMKERIIALIERFYS 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +    K+   S+I  L   L      L++P L + M+ GI S  +Q   + +   +KP  
Sbjct: 74  TTMLMKVS-TSNIHQLFVQLLQETGILLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKL 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRIYSI  LV  +KS +KI L+G    I+L  ++  +L          L+ 
Sbjct: 133 EKLDPIKGFKRIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLHF 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   L+MSKQ+IKDE K+S G+P+IK++ K
Sbjct: 193 VANMTLIMGLYAAGALMILAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIK 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA
Sbjct: 253 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH+I   E   LAR+L+ QV I+ A+P  ++KA+A+++  +Y  K
Sbjct: 313 KEHDIMTVENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358


>gi|229524122|ref|ZP_04413527.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis
           VL426]
 gi|229337703|gb|EEO02720.1| flagellar biosynthesis protein FlhB [Vibrio cholerae bv. albensis
           VL426]
          Length = 376

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEVLAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|157692318|ref|YP_001486780.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
 gi|157681076|gb|ABV62220.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
          Length = 362

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/346 (31%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D+  +G    S + +   S L   +   F        + + +    +
Sbjct: 14  GEKTEKATPKKRQDSRKKGQVAKSTDVNTAISFLLIFLSFFFIGPFMKERIIALIERFYS 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +    K+   S+I  L   L      L++P L + M+ GI S  +Q   + +   +KP  
Sbjct: 74  TTMLMKVS-TSNIHQLFVELLQETGLLLMPILGVGMLAGIISNYLQVGFLFSTEVIKPKL 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRIYSI  LV  +KS +KI L+G    I+L  ++  +L          L+ 
Sbjct: 133 EKLDPIKGFKRIYSIRALVELLKSILKIGLIGFATFIALWMHFDEILRLPLLTAEETLHF 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +     +  L  LD  +    +   L+MSKQ+IKDE K+S G+P+IK++ K
Sbjct: 193 VASMTLIMGLYAAGALMVLAGLDYMYQKFDYEKNLRMSKQDIKDEYKKSEGDPLIKSKIK 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VAKG +++A K+R IA
Sbjct: 253 QRQREMAMRRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPFVVAKGTDILALKIRTIA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH+I   E   LAR+L+ QV I+ A+P  ++KA+A+++  +Y  K
Sbjct: 313 KEHDIMTVENRPLARALYDQVDIDQAVPEEYFKAIAEILAYVYKTK 358


>gi|121586826|ref|ZP_01676608.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80]
 gi|153803039|ref|ZP_01957625.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3]
 gi|153825586|ref|ZP_01978253.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2]
 gi|229522073|ref|ZP_04411490.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80]
 gi|254226357|ref|ZP_04919946.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51]
 gi|121548993|gb|EAX59032.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 2740-80]
 gi|124121437|gb|EAY40180.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-3]
 gi|125621107|gb|EAZ49452.1| flagellar biosynthetic protein FlhB [Vibrio cholerae V51]
 gi|149740737|gb|EDM54836.1| flagellar biosynthetic protein FlhB [Vibrio cholerae MZO-2]
 gi|229340998|gb|EEO06003.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TM 11079-80]
          Length = 376

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|221635443|ref|YP_002523319.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM
           5159]
 gi|221157327|gb|ACM06445.1| flagellar biosynthetic protein FlhB [Thermomicrobium roseum DSM
           5159]
          Length = 363

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 171/345 (49%), Gaps = 1/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            +TE  + ++ ++A   G  P S + +    +LA   +L ++      ++   L    + 
Sbjct: 4   ERTERATPRRRQEARKRGQVPRSADLTSALVLLAGAFFLPWYAGAAGQTLWDYLERAFSG 63

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              R L     IV L      +  +L +P L LF   G+ S L+Q   V     +KP ++
Sbjct: 64  PLPRDLTGP-DIVALAWASGATVLKLALPILGLFAAVGVASTLVQAGFVFAPAVLKPDWR 122

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R+    G +R++S   L    K+ +KI +V  +    +  +     D   A P +I    
Sbjct: 123 RIDPIAGFQRLFSRRGLFETGKALLKIAIVLAVTYPLIQRDLPRYADLTGAEPAAIAQAI 182

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
             ++R + + +      L +LD G+       +L+M++ E+K+E++Q+ G+P IK R + 
Sbjct: 183 GQSMRDLAVRVGAAYLALAILDYGFQRWDLEQRLRMTRHELKEELRQTEGDPEIKARIRR 242

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R     +MM    +AT+++TNPTH A+ALRY      APV+VAKG   +A+++  IA 
Sbjct: 243 LQRQMAMRRMMAQVPKATVVVTNPTHLAVALRYEPRSMRAPVVVAKGAGAVAERITAIAR 302

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +H IP+     LA++L++ V +   IP   Y+AVA +I  +Y  +
Sbjct: 303 QHTIPVLRNQPLAQALYRTVEVGQEIPITLYEAVADIIAYVYRLR 347


>gi|167571643|ref|ZP_02364517.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           C6786]
          Length = 400

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWLLSGPISEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D   ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHAAF-SFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAALAAPMALGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I   ++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 GRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQLK 351


>gi|332140595|ref|YP_004426333.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550617|gb|AEA97335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 374

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ KK++DA  +G    SRE S    ++   +  LF       SV  
Sbjct: 1   MADSS---EKTEDPTGKKLDDARKKGQLARSRELSTTLVLIVSAVMFLFVGGWIAESVFK 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +    ++ +  DI+H+         +    V+  +++ M+ GI   +         
Sbjct: 58  LTRRMFI-LSRDETYDITHMFGAWGEAFSAVGPAVLLYMVVAMIAGIYGSIALGGFNFTW 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              KP   ++S  +G KR++  N LV  +KS  K++++  +   +L       L      
Sbjct: 117 EGAKPKGSKMSPIQGFKRMFGTNGLVELLKSIAKVVVIIGMAIGALLFFEDEALHLDMEL 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L+HA   ++   ++++  +  + ++D+ +  ++   ++KM+KQE+KDE K + G+P
Sbjct: 177 YPGNLFHAMDILKWAFLILVCGMIPIALIDVPYQMYKHNKEMKMTKQEVKDERKNAEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R + +       +MM+   +A +++TNPTH+++A++Y +    APV+VAKG + +A
Sbjct: 237 MVKGRIRRLQYQAATKRMMQEVPQADVVVTNPTHFSVAIKYDEKGIRAPVVVAKGADELA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +RKIA  +++P+   P LAR++F    ++  IP   + AVAQ++  +Y  K
Sbjct: 297 MHIRKIATANDVPLIPSPMLARAIFYSTEVDDEIPNALFMAVAQVLAHVYQLK 349


>gi|237653600|ref|YP_002889914.1| flagellar biosynthesis protein FlhB [Thauera sp. MZ1T]
 gi|237624847|gb|ACR01537.1| flagellar biosynthetic protein FlhB [Thauera sp. MZ1T]
          Length = 380

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 104/352 (29%), Positives = 186/352 (52%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE PSS+++E A  EG  P SRE S F   +     LL         V  
Sbjct: 1   MAE-DSDLEKTEDPSSRRLEQAREEGQVPQSRELSTFLVTMTGAATLLLLGGWMAGRVMG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 A   +R   D + ++ +L  +   A   ++P  +  M+  + + ++    V   
Sbjct: 60  LFRDGFA-FDRRAAFDENVMLDMLERMLGGALLTLMPLFVALMVAAVAAPMVLGGLVFAP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F R+   +G+ R++S++ LV   K+ +K +LVG +  + L   +  +   +   
Sbjct: 119 KVLGLKFDRLDPLQGLGRMFSLHGLVEMFKAILKSVLVGGVAALVLWYEFEHLFSLMVEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +     T+    ++I+L +  L  +D+ +   Q++ KL+M+K+E+K E K+  G+P
Sbjct: 179 LETGMADFSATIVFATLLIVLSLGLLAAIDVPFQLWQYHKKLRMTKEEVKRESKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +++ R   R +MM    +A +++TNPTH+++AL+Y   +  APV+VAKG+  +A
Sbjct: 239 MIKGRIRAMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAAKMGAPVVVAKGRGELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA E  +P+ E P LAR+L+K   +  AIP   Y AVA+++  +Y  
Sbjct: 299 LKIREIAKESEVPLLEAPPLARALYKHCELEQAIPAALYTAVAEVMAYVYQL 350


>gi|255099431|ref|ZP_05328408.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-63q42]
          Length = 516

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 101/348 (29%), Positives = 185/348 (53%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK  +   +GN   SRE  +  ++LA  + +   FS  + ++ S L+  
Sbjct: 162 GSADKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 221

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+      + + S++  L+    +   ++ +P  + F++ GI + L Q   +     +KP
Sbjct: 222 LSLDFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKP 280

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +  +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++
Sbjct: 281 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 340

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           Y     V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P +K +
Sbjct: 341 YTVKDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAK 400

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 401 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 460

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  ++IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 461 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 508


>gi|253990145|ref|YP_003041501.1| flagellar biosynthesis protein FlhB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639018|emb|CAR67632.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781595|emb|CAQ84758.1| flagellar biosynthetic protein flhb [Photorhabdus asymbiotica]
          Length = 383

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  EG    SRE S    +L   + LL+     I    S
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKARKEGQIARSRELSSIL-MLTSGLSLLWLSGQSIAHELS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     +     + +   +V  +  L   A   ++P     ++  + +  +    V + 
Sbjct: 59  LMVFEGFNFDHSMVSNDKQMVQQIGRLLRQAVWALLPVFAGLVLVALSAPALLGGLVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+++   G+KRI+S+N L    K+ +K   VG    + L  N+ +ML  I+  
Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPSMLRLIAQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   +     +++  +  +   D+ +  +    KL+M++QEIKDE K+  G+P
Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG  +IA
Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALQYDEKQMSAPKVLAKGAGIIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++++  E+ IP+ E P LAR+L++   +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIKEMGTENRIPLLEAPPLARALYRHSEVGGHIPATLYAAVAEVLAWVYQLK 351


>gi|254506872|ref|ZP_05119011.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16]
 gi|219550157|gb|EED27143.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus 16]
          Length = 376

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       + +
Sbjct: 1   MAESD-GQERTEDATPRRLQQAREKGQVARSKELASVSVLVVGAVALMWFGDSLARGLYT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  S ++ ++ D   +  +      S    +I  L+   +  +           ++
Sbjct: 60  VMERLF-SLSREEIFDHVKLFDIALGSLTSLILPLILILVTLFVAAVAGAAGVGGISFSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR+  I + V  +KS +K+ LV  +    +      +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMVGIQSWVELIKSILKVALVSGMAFYLINAAKEDLFQLSMDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K++ G P
Sbjct: 179 FPQNIFHALDILLNFVLLISCSLLIVVAIDIPFQIWQHANQLKMTKQEVKDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM    +A +I+TNP H+++ALRY Q  + AP++VAKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAEVPQADVIVTNPEHFSVALRYKQNTDRAPIVVAKGTDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+I +   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREHDIYVIPAPPLARALYHSTELEQEIPDGLFTAVAQVLAYVFQLK 351


>gi|146282913|ref|YP_001173066.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri A1501]
 gi|145571118|gb|ABP80224.1| flagellar biosynthetic protein FlhB [Pseudomonas stutzeri A1501]
          Length = 378

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +K+E P+ K++ ++  +G    SRE S  +  L  +  LL        ++ +
Sbjct: 1   MAESESGADKSEEPTEKRLRESREKGQLARSRELSTVAVTLGGIGGLLASGGGLAQTLMA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       ++  L D   +V LL    L A   ++P L+  ++  I   +     + + 
Sbjct: 61  MMQGTFE-LSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWLFSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+KR++S   LV  +K+  K ++V  +  + L+     +L      
Sbjct: 120 KAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLSAYQDDLLSIAKQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +  +D+ +       KL M+KQE+KDE K S G P
Sbjct: 180 LDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVKDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+R + + R   + +MM+A   A ++ITNPTH+A+AL+Y   +  AP LVAKG + +A
Sbjct: 240 EVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPRLVAKGGDFVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352


>gi|297582018|ref|ZP_06943937.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385]
 gi|297533713|gb|EFH72555.1| flagellar biosynthetic protein FlhB [Vibrio cholerae RC385]
          Length = 376

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  + ++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYNTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|126697834|ref|YP_001086731.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile 630]
 gi|115249271|emb|CAJ67084.1| Bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile]
          Length = 604

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 101/348 (29%), Positives = 185/348 (53%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK  +   +GN   SRE  +  ++LA  + +   FS  + ++ S L+  
Sbjct: 250 GSADKTEEATPKKKGEQRKKGNIAKSRELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+      + + S++  L+    +   ++ +P  + F++ GI + L Q   +     +KP
Sbjct: 310 LSLDFYMNI-NYSNLEKLVIAGLMDFFKIFLPIAIPFLVLGIIANLFQVGILFTGETLKP 368

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +  +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++
Sbjct: 369 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           Y     V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P +K +
Sbjct: 429 YTVKDLVYSILSKICVAMIAIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEVKAK 488

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  ++IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 549 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596


>gi|289578415|ref|YP_003477042.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus
           Ab9]
 gi|297544691|ref|YP_003676993.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528128|gb|ADD02480.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter italicus
           Ab9]
 gi|296842466|gb|ADH60982.1| flagellar biosynthetic protein FlhB [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 363

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 184/348 (52%), Gaps = 2/348 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + K+ +DA  +G    SRE +    I+A  + L     P +  + +    LL 
Sbjct: 14  EEKTEPATPKRRQDARKKGQVFQSREITSALVIVAGFLALNILAIPSLEKMMALTKYLLY 73

Query: 68  SAT--QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + +     + ++  I  L T++   A  ++IP +LL  +  + S  +Q   V     +  
Sbjct: 74  TYSGANDDVFNVVGIRNLFTYVLQQAISIIIPIILLIFVVSLVSTYLQVGFVFTTEPLAF 133

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  EG KRI+S   LV   KS  K++++  I+   L   Y  +   +  +   IL
Sbjct: 134 KLERLNPVEGFKRIFSKRALVELAKSIAKVVVLFYIMYSFLASQYKGIPMLLDMSVQDIL 193

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +A   +  + I I + +  L  LD  + + ++   LKMSK++IK+E K++ GNP IK  
Sbjct: 194 KYALNILLGITIRIGIVLIVLGALDYFFQWREYEVSLKMSKEDIKEEFKETEGNPQIKAE 253

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A ++ITNPTH A+AL Y    NDAPV++AKGQ++IA ++++
Sbjct: 254 IRRKQRQVSMRRMMQDLKKADVVITNPTHLAVALMYDSNVNDAPVVIAKGQDMIALRIKE 313

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A + NIPI E   LA++L++   I   IPP  Y+AVA+++  +Y  K
Sbjct: 314 EAKKLNIPIVENKPLAQALYRSTEIGDMIPPELYQAVAEVLAYVYSLK 361


>gi|254973928|ref|ZP_05270400.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-66c26]
 gi|255091314|ref|ZP_05320792.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile CIP 107932]
 gi|255312972|ref|ZP_05354555.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-76w55]
 gi|255515731|ref|ZP_05383407.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-97b34]
 gi|255648825|ref|ZP_05395727.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-37x79]
 gi|260682043|ref|YP_003213328.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile CD196]
 gi|260685641|ref|YP_003216774.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile R20291]
 gi|306518939|ref|ZP_07405286.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile QCD-32g58]
 gi|260208206|emb|CBA60557.1| flagellar export protein [Clostridium difficile CD196]
 gi|260211657|emb|CBE01921.1| flagellar export protein [Clostridium difficile R20291]
          Length = 604

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 184/348 (52%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK  +   +GN   S+E  +  ++LA  + +   FS  + ++ S L+  
Sbjct: 250 GSTDKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+      + + S I  L+    +   ++ +P  + F++ GI + L Q   +     +KP
Sbjct: 310 LSLDFYMNI-NYSSIEKLVIAGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKP 368

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +  +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++
Sbjct: 369 NLSKLNPVSGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           Y     V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P IK +
Sbjct: 429 YTVKDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAK 488

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  ++IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 549 IAKGNDIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596


>gi|90021814|ref|YP_527641.1| flagellar biosynthesis protein FlhB [Saccharophagus degradans 2-40]
 gi|89951414|gb|ABD81429.1| flagellar biosynthetic protein FlhB [Saccharophagus degradans 2-40]
          Length = 376

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 176/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P++K+ E A  +G  P S+E +  + ++   + L + F   I    +
Sbjct: 1   MAEEDSAQEKTEEPTAKRQEKAREDGQIPRSKELTTSAVLIVGCVGL-YMFGGQIAQGLA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+     +  +  + D + ++  L        +++IP   + ++  I   +     + + 
Sbjct: 60  DILKFNFTIEREAIFDPNAMLGHLGSSFYLGLKVLIPLFAVLLVAAIAGPIALGGWLFST 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+    G+KR++S+ +LV  +K+  K+ +V     + L      +L      
Sbjct: 120 KSLAPKLNRMDPVAGLKRMFSVKSLVELVKAIGKVGVVVAFAFVLLNYMKEDLLGLGFEG 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+ +      I+I +    +  +DI +       KL+M++QEIKDE+K S G P
Sbjct: 180 VERGMAHSVYLSIIAAIIISVSTLVIAAVDIPFQIWDNVKKLRMTRQEIKDEMKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     +++MM A   A ++ITNPTHY++AL+Y     + P+L+AKG + +A
Sbjct: 240 EVKGRIRQLQYEMAQNRMMAAVPEADVVITNPTHYSVALKYDPNSMETPILLAKGVDHMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R+IA  + I   + P LAR+++    ++  IP   Y AVAQ++  ++ 
Sbjct: 300 MKIREIAKANKIEFIQSPLLARAIYHTTEVDEEIPSGLYVAVAQVLAYVFQ 350


>gi|167564493|ref|ZP_02357409.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           EO147]
          Length = 400

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TEA + K+ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLERTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWLLSGPISEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH    S  +    D   ++     LSL     + P L L  +  + + +     +++ 
Sbjct: 60  MLHAAF-SFDRATAFDTHRMLSHAGSLSLEGLYALAPLLALTGVAALAAPMALGGWLVST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+R++   G+ RI+SI   +    S  K ++VG I   ++  +   +L   +  
Sbjct: 119 KTFELKFERLNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGAAIWRSKDELLGLATQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H+ L  A   V     M +  +  +  LD+ +   Q+  KL+M+K+E+K E +++ G+P
Sbjct: 179 LHAALADALHLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM     A +++TNPTH+A+AL+Y   E  AP +VAKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A EH++P+ E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 GRIRALAAEHHVPLLEAPPLARALYHNVDLEREIPGTLYSAVAEVLAWVYQMK 351


>gi|224826341|ref|ZP_03699443.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002]
 gi|224601442|gb|EEG07623.1| flagellar biosynthetic protein FlhB [Lutiella nitroferrum 2002]
          Length = 388

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 85/354 (24%), Positives = 175/354 (49%), Gaps = 3/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TEA + ++++ A  EGN P SRE S F+  +   + LL      + +   
Sbjct: 1   MAE-DSDLERTEAATGRRLQQAREEGNIPRSRELSTFAVTMTG-VALLMAMGERLGNFML 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +     ++    ++             ++P      +  + + L+     L  
Sbjct: 59  QLMRRLFTFDHDMVQHTDPVLLRFKESLTDTLLQLMPLFGGLALVAVAAPLLVGGWNLTF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++   GI+R++S++ L   +K+ +K +++G + T  +      ++  I+  
Sbjct: 119 KGIEPKLSKLNPAHGIQRMFSLSALTEALKAILKSVVIGGVATWVIWNERAELIGLIAMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L           ++++  +  L V+D+ +    ++ +L+M+K+E+K E K+  G+P
Sbjct: 179 LETALGKMMQLTFHTFLLVVGAMLLLVVVDVPFQIWNYHKQLRMTKEEVKQEYKEQEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM+    A +I+TNPTHYA+AL+Y +    AP ++AKG+  +A
Sbjct: 239 EVKGRIRQLQRQAAQRRMMQEIPSANVIVTNPTHYAVALKYTEG-MRAPQVIAKGRLKLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +K+     EH + +   PS AR+L+    +   +P   Y A AQ++  +Y  K+
Sbjct: 298 EKIIDTGREHRVTVMRVPSFARALYFHSELGEEVPSRLYGAAAQILAYVYQLKL 351


>gi|327481253|gb|AEA84563.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166]
          Length = 378

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +K+E P+ K++ ++  +G    SRE S  +  L  +  LL        ++ +
Sbjct: 1   MAESESGADKSEEPTEKRLRESREKGQLARSRELSTVAVTLGGIGGLLASGGGLAQTLMA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       ++  L D   +V LL    L A   ++P L+  ++  I   +     + + 
Sbjct: 61  MMQGTFE-LSRETLLDEGAMVRLLMGSGLMALEAIMPLLIALLIASIVGPVALGGWLFSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+KR++S   LV  +K+  K ++V  +  + L+     +L      
Sbjct: 120 KAMAPKVSRMNPAAGLKRMFSTKALVELLKALGKFLVVLGVALLVLSAYQDDLLSIAKQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +  +D+ +       KL M+KQE+KDE K S G P
Sbjct: 180 LDLAIMHSVEIVGWCALWMACGLIIIAAVDVPFQLWDNKQKLMMTKQEVKDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+R + + R   + +MM+A   A ++ITNPTH+A+AL+Y   +  AP LVAKG + +A
Sbjct: 240 EVKSRIRQLQREAAQRRMMQAVPEADVVITNPTHFAVALKYDGDKGGAPRLVAKGGDFVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH + + E P+LAR+++    ++  IP   Y AVAQ++  +Y  +
Sbjct: 300 LKIREIAQEHKVTVLESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLR 352


>gi|85716547|ref|ZP_01047517.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
 gi|85696548|gb|EAQ34436.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
          Length = 359

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DAL  G+   S+E + + +I    + L  F          
Sbjct: 1   MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNAWFAIAGATLVLSTFAGSIGDGFRM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+A++ Q +  D   ++ L   +    +  +   LLL  M  +   ++Q   V + 
Sbjct: 61  PLRNLIANSWQIR-TDGPGLLALAEQIGYCLAAALGVPLLLLTMAAVAGNVVQHRFVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++S+  G KRI+    + NF K   K++ +G ++T  L      +   +  +
Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAVANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P+++L        ++L  +++ +A + + D  + Y QW+ + KMS +E+K+E KQS G+P
Sbjct: 180 PNALLGITKSLTLQLLGAVMVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + +   R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSYERG-MSAPVCVAKGVDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+IP+ E   LAR+L+  V I+  IP   Y AVA++I  +   K
Sbjct: 299 LKIREIAREHDIPVVENVPLARALYAAVEIDDEIPVEHYHAVAEIIGYVMGLK 351


>gi|255305289|ref|ZP_05349461.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           difficile ATCC 43255]
          Length = 604

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 183/348 (52%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK  +   +GN   S+E  +  ++LA  + +   FS  + ++ S L+  
Sbjct: 250 GSTDKTEEATPKKKGEQRKKGNIAKSKELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYF 309

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+      + + S I  L+    +   ++ +P  + F++ GI + L Q   +     +KP
Sbjct: 310 LSLDFYMNI-NYSSIEKLVITGLMDFFKIFLPIAIPFLVLGIVANLFQVGILFTGETLKP 368

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +  +++   G K ++S+ +L   +K    I ++  I      +NY  +L   +    +++
Sbjct: 369 NLSKLNPISGFKNMFSMRSLSTLIKDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLM 428

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           Y     V  +L  I + +  + V D  +  +    +L+M+KQE+KDE K S G+P IK +
Sbjct: 429 YTVKDLVYSILSKICVAMIVIAVADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAK 488

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     + M+A   AT+I+TNPTH ++A+RY + ++ APV+VAKG + +A K+R+
Sbjct: 489 IKQKQRQISSQRTMQAVPSATVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIRE 548

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  + IPI E   +AR L+KQV I+  IP   Y+A A+++  +Y  K
Sbjct: 549 IAKGNEIPIIENKPIARLLYKQVEIDQEIPEDMYQAFAEILVAVYKIK 596


>gi|88858095|ref|ZP_01132737.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
 gi|88819712|gb|EAR29525.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
          Length = 376

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 169/353 (47%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +   KTE P+SKK+EDA  +G    S+E      ++   I L+ +       +  
Sbjct: 1   MAEG-SDQEKTEEPTSKKLEDARKKGQIARSKETGTVVVLIMSAISLIIYGPEIGMGLKR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  LL    + +  D + +  +   ++      +   +L+ ++              + 
Sbjct: 60  VMARLL-DLNRTEAFDTTKMFAVWGDIAKELWFGMTMFVLVILVAAFIGNTFLGGFNFSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           +   P   ++S  +G+ R++     +   K  +K +LV     + +   ++ +L      
Sbjct: 119 SAAAPQANKLSPAKGLVRMFGPQAAIELFKGLLKFLLVAVTAVLLIKFYFYEILHLSLET 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S + HA   +  + + +   +  + V+D  +       +LKM+ QE+KDE K S G+P
Sbjct: 179 APSNIQHALTMLAWMFLGLSCTLILVAVVDAPFQLWNHNKQLKMTLQEVKDEYKNSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +   R   + +MM+    A +I+TNPTHY++AL+Y      AP+++AKG + IA
Sbjct: 239 QIKARIRRTQREMSQRRMMQDVPDADVIVTNPTHYSVALKYDTDRAGAPIVLAKGIDEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++RKIA EH++PI E P L RSLF    I   IP   + AVAQ++  +Y  K
Sbjct: 299 LQIRKIAKEHDVPILESPMLTRSLFHTTDIGQQIPDQLFIAVAQVLAYVYQLK 351


>gi|160876164|ref|YP_001555480.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS195]
 gi|160861686|gb|ABX50220.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS195]
 gi|315268360|gb|ADT95213.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS678]
          Length = 376

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 166/340 (48%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +++      +   P + +  + +   + +  + +
Sbjct: 13  PTGRRLEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D   +  +   ++   +  +   +LL ++      +       +   + P   ++S  
Sbjct: 72  IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G+KR++ +  LV   K   K  +V     + L+  +  ++   S +    +YHA   + 
Sbjct: 132 AGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K R + + R  
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+IA EHNI 
Sbjct: 252 AQRRMMTEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    ++  IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351


>gi|78044903|ref|YP_359855.1| flagellar biosynthetic protein FlhB [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997018|gb|ABB15917.1| flagellar biosynthetic protein FlhB [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 353

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 181/353 (51%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      +TEAP+ +++ +A   G    S+E + F+ +      LL       Y    
Sbjct: 1   MADEQRDQ-RTEAPTPRRLAEARRRGQVFKSQELN-FAVMFLIFFLLLLVLGGYFYQQFY 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   +      +L   +    LL +   S  ++V+P LLL M+ GI   L+Q   +   
Sbjct: 59  LLSRNVFRNMFIELTPSAVRGLLLYYFGWS-FKIVLPFLLLGMLAGIALNLVQVGFIFTT 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KPS++R++   G  RI+S  N V  +K+F+K   +  +I + +  N   +   I   
Sbjct: 118 EPLKPSWERINPLSGFSRIFSRRNWVELLKNFLKFGFLALVIYLRIKSNLPLIFQKIGQA 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P       F  ++K+ +  LL +     +D  +   ++Y  LKM+KQE+K+E +Q+ G+P
Sbjct: 178 PAEYFNGYFSLIKKIALDTLLVLFLFGAVDYWYQRREYYQSLKMTKQELKEEYRQTEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +   R    +++     +AT+++TNP H A+AL+Y + +  AP +VAKG   +A
Sbjct: 238 LIKARLRERQRQIALNQIAREVPQATVVVTNPVHIAVALKYERGKMAAPKVVAKGAGFLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++IA  HN+ I E   +AR L+K   +   IP   Y AVA++I  +Y KK
Sbjct: 298 EKIKEIARAHNVEIVENVEVARFLYKNCEVGEEIPEELYNAVAEIIAWVYRKK 350


>gi|328545474|ref|YP_004305583.1| flagellar biosynthetic protein FlhB [polymorphum gilvum
           SL003B-26A1]
 gi|326415215|gb|ADZ72278.1| Flagellar biosynthetic protein FlhB [Polymorphum gilvum
           SL003B-26A1]
          Length = 358

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 128/354 (36%), Positives = 208/354 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    + KTE P+ KKI DA+ +GN P S+EAS+ ++ LA L+   F    G   + S
Sbjct: 1   MSDQPDKETKTEEPTEKKIRDAIEKGNTPTSKEASVLATFLAILLIGSFATVTGARRLVS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+  A    L + +  + L   L+L A R + P +    + G+ +   Q  P +  
Sbjct: 61  GLSGLIDDAGGFTLGNGADALLLTHALALEAGRFLAPIVATLAVAGLAAAWFQNAPRIVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP   R+SL +G +R++ I   V F K+ +K   +  I  + L  N   +++ + ++
Sbjct: 121 HRIKPDPSRLSLLKGWQRLFGIQGAVEFGKALLKFGAISLIALLLLRANEAGLVNAMFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++         ++L  I +    L   D+ W+   W   L+M++QEIKDE KQ+ G+P
Sbjct: 181 PSALPETILHLAMRLLSGICIATIVLVAFDLVWARVHWRQNLRMTRQEIKDEHKQTEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQ+S+AR R R++MM A  +AT++I NPTH+A+ALRY + E  AP++VAKGQ+LIA
Sbjct: 241 LVKARQRSLARDRARNRMMAAVPKATLVIANPTHFAVALRYDRDETAAPIVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
            K+R+IA +++IP+ E   LARSL+    I+  IPP FY+ VA++I  +Y +K+
Sbjct: 301 LKIRQIAEDNDIPVIENRELARSLYASTEIDRMIPPQFYRMVAEVICYVYSRKM 354


>gi|224373568|ref|YP_002607940.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH]
 gi|223588472|gb|ACM92208.1| flagellar biosynthetic protein FlhB [Nautilia profundicola AmH]
          Length = 351

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 187/353 (52%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ KK++DA  EGN P S E S F  +   +I ++F+     Y +  
Sbjct: 1   MADD---MEKTEDPTPKKLQDARKEGNVPKSMETSGFVVLFVAIIVIIFYLKYITYYLEK 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +       ++I  +  ++   +L+   L+ P L   ++ GI   ++Q   +  +
Sbjct: 58  FYMYYTSFIGVEITKNI--VFEIVLKSALNFFILLAPLLGAVVLAGILGNVMQFGFLFTV 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F++++  +GIKR++S+  LV  +K  +K+ +   +      +    +      +
Sbjct: 116 KPIIPKFEKINPIKGIKRLFSLKTLVEGIKMTLKVSVAFGVGAWLFMKFLEEIPKLELMS 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L        +D  +  + +   L+MSKQEIKDE KQ+ GNP
Sbjct: 176 FFEQLKWFEEKALIIISAMLAVFLVFAAIDFIYQRYSYKKSLRMSKQEIKDEYKQTEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + R   + +MM    +A ++ITNPTHYA+A+RY +T+++AP ++AKG + +A
Sbjct: 236 EIKAKIRQLQREMAKKRMMSEVPKADVVITNPTHYAVAIRYDKTKDEAPRVIAKGVDNLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA EH+I I E P LAR L+K V I+  IP   YKAVA+++  +Y  K
Sbjct: 296 LKIKEIAREHDIMIVENPPLARELYKLVDIDELIPQKLYKAVAEVLAFVYKAK 348


>gi|254291356|ref|ZP_04962149.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226]
 gi|150422686|gb|EDN14640.1| flagellar biosynthetic protein FlhB [Vibrio cholerae AM-19226]
          Length = 376

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  +S++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATSRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|88704274|ref|ZP_01101988.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71]
 gi|88701325|gb|EAQ98430.1| Flagellar biosynthetic protein flhB [Congregibacter litoralis KT71]
          Length = 384

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 82/353 (23%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      +TE P+ ++ E+A  +G  P SRE +   S+L   + L       +  + +
Sbjct: 1   MAEEQTGQERTEPPTERRKEEARKKGQVPRSRELNTMLSLLITGVGLWVLGGSLVDDLFA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + +   S  +    D   +     H++ +    + P   + ++  +   L+      ++
Sbjct: 61  -ITISGFSVDRAAAFDAEQLPVRFMHMASATLLALAPLFAVTVVAALAGPLLMGGWSFSV 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    +++   +G+ R++S+  L    K+ +K +L+  +  + +      +L   +  
Sbjct: 120 QAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMAVAYLMIMAFERDILTLSALT 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P          +   LI++   +  + + D+ +    +  +L+M++QE++DE+K++ G P
Sbjct: 180 PGEASSRVVSMLVIALIVLSSAMVLIVMFDVPFELWNFNKQLRMTRQEVRDEMKETDGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +++ R   + +MM+    A ++ITNPTH ++AL Y      AP +VAKG++L+A
Sbjct: 240 EVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHVSIALSY-ADGAGAPRVVAKGRDLLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R IA EH++P++E P LAR+L+    +   IP   Y AVA+++  ++  +
Sbjct: 299 LQIRTIATEHDVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQLR 351


>gi|217972629|ref|YP_002357380.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS223]
 gi|217497764|gb|ACK45957.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS223]
          Length = 376

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 166/340 (48%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +++      +   P + +  + +   + +  + +
Sbjct: 13  PTGRRLEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D   +  +   ++   +  +   +LL ++      +       +   + P   ++S  
Sbjct: 72  IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G+KR++ +  LV   K   K  +V     + L+  +  ++   S +    +YHA   + 
Sbjct: 132 AGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K R + + R  
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQREL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+IA EHNI 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    ++  IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351


>gi|323703184|ref|ZP_08114837.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531843|gb|EGB21729.1| flagellar biosynthetic protein FlhB [Desulfotomaculum nigrificans
           DSM 574]
          Length = 354

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 104/349 (29%), Positives = 190/349 (54%), Gaps = 2/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           +    KTE  + +++++A  +G  P S + +    +LA  I+ L      I         
Sbjct: 3   EGSQEKTEQATPRRLQEARRKGQVPKSADLNGALLLLAAGIFALMAKDSLISHTQRAFFG 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              +   R+ +D S +V  L   +++     +P  L+ M+  +G+ + Q   +     + 
Sbjct: 63  YFNNLVVRRPQD-SQLVEYLIDFTVNIFASFMPFFLILMVVAVGANMAQVGFLFAPEVIL 121

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  + ++   G+KRI+S  +L   +KS +K+ILVG +I  ++   +  +L    + P ++
Sbjct: 122 PKLEHLNPINGLKRIFSGRSLFELVKSILKVILVGWVIYAAVRGEFANLLAIFQSPPQTM 181

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L        KV+I        L++LD+ +  + +  +++MSKQE+K+E KQ+ G+P IK 
Sbjct: 182 LDQVLTVALKVIIWGTAAYLALSILDLMYQRYAFQKQMRMSKQEVKEEYKQTEGDPQIKG 241

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
             +   R  + + + +   +AT+++TNPTHYA+AL+Y +   DAPV+VAKG +L+AK++R
Sbjct: 242 WLRRRQRQLLMNLVRKEVPQATVVVTNPTHYAVALKYERD-MDAPVVVAKGVDLLAKQIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++A EH+IP+ E   +AR L+  V I  AIP   Y+AVA+++  +Y  K
Sbjct: 301 EVAREHDIPVIENVEVARFLYAHVEIGQAIPVEMYQAVAEILAMVYRLK 349


>gi|302389679|ref|YP_003825500.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani
           DSM 16646]
 gi|302200307|gb|ADL07877.1| flagellar biosynthetic protein FlhB [Thermosediminibacter oceani
           DSM 16646]
          Length = 357

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 180/347 (51%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + ++ + A   G    SRE +    +LA  + L  F      +  S L    
Sbjct: 7   SQEKTEKATPRRRQKARERGQVFSSRELNSALILLASFVLLKIFGIYIFENTGSFLRQFF 66

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                R+   IS I  +     +   +   P  +  ++ G+    +Q   V +L  + P 
Sbjct: 67  IENLIRQDLSISDIYGIFYSSIVFVLKSTAPVAVGIVLVGLLVNFLQVGFVFSLEPISPK 126

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             R++  EG KRI+S  +L+  +K+ VKIIL+  I      E   T+   +  +    L 
Sbjct: 127 LDRINPVEGAKRIFSKRSLIELVKALVKIILIIYIFYGGFVEIKDTVALMLDMSFTESLG 186

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +    + ++ + + + +  L+VLD G+ ++++   L MSK+++K+E+K+  GNP IK+R 
Sbjct: 187 YFTSMMFRLGLKVGIALLVLSVLDYGYQWYEYEKSLMMSKEDVKEELKEVEGNPQIKSRI 246

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + R   R +MM+   +A ++ITNPTH A+AL Y  + + APV++AKG   IA+K+++I
Sbjct: 247 RQVQRQMSRRRMMQEVKKADVVITNPTHIAIALGYDASVHAAPVVLAKGTGAIAEKIKEI 306

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A   +IPI E   LA++LFK V +   IP  FY AVA+++  +Y  K
Sbjct: 307 AEREDIPIVENKPLAQTLFKSVEVGDIIPEEFYNAVAEILAFVYSLK 353


>gi|329904716|ref|ZP_08273917.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547860|gb|EGF32618.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 379

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ ++   KTE  S ++I+ A   G+ P SRE +    +LA    L    +  +  + +
Sbjct: 1   MSD-ESDMEKTEPASQQRIDKARENGDVPRSRELATCLVLLAAGGGLYISGANMLRQLKA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +  + +  D S ++  L            P   + ++  + S L+    + + 
Sbjct: 60  ALASGL-TFDRGQAFDFSLLLSRLGSHLGDLLLAFAPLAGILILVALASPLLIGGWLFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F R++L  G+ +I S+N LV   K+  K ++VG+I  + +      +L  +   
Sbjct: 119 QALAPNFGRMNLFSGLLKIVSLNALVELGKAVAKAVIVGSIAYLVMRSEIDEVLGLMVEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +   H    +    ++I++ +  +  +D  +    +  K+ M++QE++ E K+S GNP
Sbjct: 179 AEAGSMHMAKLLFSTYMLIVMGLVLIAAVDAPYQMWSYAKKMMMTRQEVRQEAKESEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + ++  R   R +MM     A +++TNPTHYA+AL+Y   +  AP +VAKG + +A
Sbjct: 239 EIKAKIRAQQREMARRRMMSEVPTADVVVTNPTHYAVALKYTDGKMGAPQVVAKGADAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  +N+P+ E P LAR+LFK V +  AIP   Y AVA+++  ++  K
Sbjct: 299 ARIRELAAANNVPLLEAPPLARALFKHVELGDAIPETLYTAVAEVLAYVFQLK 351


>gi|254497495|ref|ZP_05110288.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12]
 gi|254353310|gb|EET12052.1| flagellar biosynthesis protein FlhB [Legionella drancourtii LLAP12]
          Length = 378

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 187/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE +  D KTE PS+K++++A  +G    S++ +   ++L   +  L F       +  
Sbjct: 1   MSEQNN-DEKTEQPSAKRLKEARQKGQVARSKDFNTTVALLFTAVGFLAFGKQLSDQLAL 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       T   +  +  +  L   L+      ++P L+   +  + + L+    V + 
Sbjct: 60  MMRHSFEFDTNVIITPVVSLERLF-FLAKMGFWALVPILIFIFVVSLAAPLVMGGWVFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P F R+++ +G+KR+ S+ N V  +KSF K +LV ++  I L     T+L      
Sbjct: 119 KVVQPKFSRLNVFQGLKRMVSLKNFVEMIKSFFKFVLVASVAVIVLKSQIPTLLSLAHVP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +      V K  +++   +  + +LD+ +  ++    +KM+KQE++DE K++ G P
Sbjct: 179 IETAIGSGALIVVKCFVLVAASLLLIAMLDVPFQLYEHNKNMKMTKQELRDEYKETEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +KN  +   +   + +MM     A +++TNPTHYA+A+RY +  N APV+VAKG++L+A
Sbjct: 239 EVKNAIRRAQQEIAKRRMMTEIPTANVVLTNPTHYAVAIRYKEKGNKAPVVVAKGKDLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ K+A EH IPI   P LAR+L+    +N+ IP   Y AVAQ++  ++  +
Sbjct: 299 FQINKVAKEHEIPIISVPPLARALYFSTKLNAEIPRGLYIAVAQVLAYVFQLR 351


>gi|312792666|ref|YP_004025589.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179806|gb|ADQ39976.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 366

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 101/344 (29%), Positives = 187/344 (54%), Gaps = 1/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  +  +        ++ 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFAYSSIVEPLQQGSKYFFSN- 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               LED+     LL+ +  ++ ++++P  L  M+        Q   ++    +K SF++
Sbjct: 75  LNYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLITGQSLKMSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG KRI+SIN++V  +KS +K++++G             +L+    N  +I+  +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYEMNVLTIVKFSF 194

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ +  
Sbjct: 195 DSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIK 314

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           H I I E   LAR+L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 315 HRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358


>gi|229513771|ref|ZP_04403233.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21]
 gi|229348952|gb|EEO13909.1| flagellar biosynthesis protein FlhB [Vibrio cholerae TMA 21]
          Length = 376

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  ++++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|294635599|ref|ZP_06714076.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685]
 gi|291091051|gb|EFE23612.1| flagellar biosynthetic protein FlhB [Edwardsiella tarda ATCC 23685]
          Length = 401

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 105/350 (30%), Positives = 174/350 (49%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++   KTE P+  +IE A  +G  P SRE +    +   L  LL        S+   + 
Sbjct: 16  EESDLEKTEDPTPHRIEKAREKGQIPRSRELTSMLMLAVGLAILLLGGDYLASSLAVMIA 75

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       L +   ++  L  L   A   ++P LL  M+ G  + ++    + N   +
Sbjct: 76  QGL-HFDHLLLSNDRQMLIQLGMLLRQAVAALLPVLLGLMLVGWCAPMLIGGFLFNPGSI 134

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K    R++   G KR++S   L   +K  +K  LVG +    L   +  ML  I+ +   
Sbjct: 135 KCELNRLNPLTGFKRMFSSQVLAELLKGVLKATLVGCVTGWFLWHYWPRMLRLITESSLE 194

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            +  A   V    ++++L +  +   D+ +      +KL+M+KQEIKDE K+  G+P +K
Sbjct: 195 AMGDALHLVGMCGLLVVLGLLPMVGFDVFYQLWSNLNKLRMTKQEIKDEFKEQEGDPHVK 254

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   IA+++
Sbjct: 255 GRIRQQQRAAARRRMMSDVPKADVIVTNPTHYAVALQYQENKMSAPKVLAKGAGNIAQRI 314

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +  EH IP  E P LAR+L++   I  AIP   Y AVA+++  +Y  K
Sbjct: 315 KALGMEHRIPQLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLK 364


>gi|302392376|ref|YP_003828196.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM
           5501]
 gi|302204453|gb|ADL13131.1| flagellar biosynthetic protein FlhB [Acetohalobium arabaticum DSM
           5501]
          Length = 353

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 108/345 (31%), Positives = 180/345 (52%), Gaps = 1/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ K+ ++A  EG    S+E S+  ++L   I L F     +Y     ++    
Sbjct: 4   EEKTEDPTPKRRQEAREEGQVAQSQELSMAFTLLFSFIMLFFLMDNILYESMEFMNKYFT 63

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L ++     LL  L     RLV P + +  + G+   L+Q   +     ++P  
Sbjct: 64  DYMTMTL-NLQTFYTLLLELMQFIFRLVAPLMFVVALVGVVVGLLQTGFLFTPTSLQPDP 122

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++    G K+I+S   +  F KS +KI +VG I  +++ +N   ++ F     + ++  
Sbjct: 123 SKLDPVSGFKQIFSKQTVAEFFKSILKISIVGGIAYLTIKDNLPQLIMFSKMGLNQVVSL 182

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  + I + L +  L +LD  +   +   +LKM+KQE+K+E KQ+ GNP IK RQK
Sbjct: 183 IGSIIYSLAIKVSLILILLGILDFIYQKWEHEQQLKMTKQEVKEEKKQTEGNPEIKKRQK 242

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +    ++MME+   A ++ITNPTH A+A+++     DAP++VAKG+  IA K++K A
Sbjct: 243 EKQQEMAMNRMMESVPEADVVITNPTHIAVAIKFDIDNMDAPIVVAKGKGEIAHKIKKKA 302

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            E  I I EE  LAR+L+ QV I   IP   Y+AVA+++  +Y  
Sbjct: 303 EECGIEIVEEKPLARALYGQVEIEEEIPMELYQAVAEILAYVYQL 347


>gi|23099029|ref|NP_692495.1| flagellar biosynthesis protein FlhB [Oceanobacillus iheyensis
           HTE831]
 gi|22777257|dbj|BAC13530.1| flagella-associated protein [Oceanobacillus iheyensis HTE831]
          Length = 359

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 98/346 (28%), Positives = 174/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK  D   +G    S++ +    +L C I L  F S  +  +T        
Sbjct: 12  GEKTEKATPKKRLDERKKGRVAKSQDVNTALLLLGCFIALFVFGSYMLQYMTGFFEKSFT 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L +  ++  +    SL A  ++ P +++ ++ G+ + L+Q   + +   +K   
Sbjct: 72  EYIHWDLTE-KNVQLMFNSASLDAGMMLAPIMIIAIITGMAANLVQVRFLFSTEPLKFDL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K++   +G KRI+SI  LV F+KS +KI+ VG +    +      ML     +    L  
Sbjct: 131 KKIDPIQGAKRIFSIRALVEFLKSMLKIVFVGIVTFYVIWIFKDDMLMTAFLDAKGALGF 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  +    ++ +  L + D  +    +   ++MSKQ+IKDE K   G+P+IK++ K
Sbjct: 191 FATVTAIMGFAAIILLVFLALFDYWYQKFDFEKNIRMSKQDIKDEYKNVEGDPLIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM     A +IITNPTHYA+A++Y +++ +AP ++AKG + IA+K+++IA
Sbjct: 251 EKQRQMATRRMMSEVPNADVIITNPTHYAVAIKYDESKANAPYILAKGTDQIAQKIKEIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             H++ + E   LAR L   V I   IP  +++AVA+++  +Y  +
Sbjct: 311 KNHDVIMVENRPLARGLHDAVEIGEIIPEAYFQAVAEVLAYVYRME 356


>gi|114706765|ref|ZP_01439665.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506]
 gi|114537713|gb|EAU40837.1| flagellar biosynthesis protein B [Fulvimarina pelagi HTCC2506]
          Length = 362

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 127/349 (36%), Positives = 200/349 (57%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    KTE P+ KKI D + +GN P SREA + +S LA  +++        Y + +
Sbjct: 1   MAESEDRSQKTEQPTEKKIRDTIEKGNLPNSREAPVLASFLAISLFIALQARESGYRLLT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  Q +LE     + +L+ LS  A+  ++P  +   + GI + ++Q  P +N 
Sbjct: 61  TLQTTFDNPLQWELETSRDALHVLSVLSTEAAIFLVPVAIFLCIGGILASVLQNPPQVNF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP    +S   G+KRI+    L  F K+  K +++G ++   +  N  TM+  + A+
Sbjct: 121 ERIKPKASNISPASGLKRIFGPRGLTEFAKAVFKFLMIGVVVGTLIVSNLGTMIQTMLAD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         K+L  + +    L   DI  +   W   + MSKQEIKDE KQ+ G+P
Sbjct: 181 PVQVPELVLDLAMKLLSGVSIATIVLVAADIAMTRIHWRRDIMMSKQEIKDEHKQTDGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K RQK IAR R R +M+ A   AT++I NPTHYA+ALRY + E  AP++VAKG +L+A
Sbjct: 241 MVKQRQKQIARERSRKRMIAAVPNATLVIANPTHYAIALRYKREEGGAPMVVAKGTDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            K+R++A E  IP+ E+  LARS++  V I+  IPP F+KAVA++IY +
Sbjct: 301 LKIREVAEEKEIPVIEDKLLARSMYDHVHIDQMIPPEFFKAVAEIIYYL 349


>gi|153213288|ref|ZP_01948700.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587]
 gi|229528868|ref|ZP_04418258.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)]
 gi|124116088|gb|EAY34908.1| flagellar biosynthetic protein FlhB [Vibrio cholerae 1587]
 gi|229332642|gb|EEN98128.1| flagellar biosynthesis protein FlhB [Vibrio cholerae 12129(1)]
          Length = 376

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    +TE  ++++++ A  +G    S+E +  S ++   + L++F       +  
Sbjct: 1   MAESD-GQERTEEATTRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L    ++ ++ D+  +  ++    ++    ++  L    +  +           + 
Sbjct: 60  AMQRLFE-LSREEIFDLGKLFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G+KR++ + + V  +KS +K++LV  +    +  +   +       
Sbjct: 119 EAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDV 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE+KDE K + G P
Sbjct: 179 YPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A
Sbjct: 239 EVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 299 LKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 351


>gi|188586038|ref|YP_001917583.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350725|gb|ACB84995.1| flagellar biosynthetic protein FlhB [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 363

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 2/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P+ K   ++  +G    S E +    ++A    L   F        +      +
Sbjct: 14  QEKTETPTPKHRRESRKKGQVAKSTELTSALLLMATFSTLYIVFPYSFDRFMNFAKQFWS 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +        +  I  LL  + +  +    P +++ ++ G+ S L+Q   +L  + +KP  
Sbjct: 74  NINTIN-YTMDEIHSLLITMMMEGAVFAAPVIIVAVLIGLISNLMQVGILLTGDPLKPKL 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R+   +G ++I+S   +V   KS  K++++G I  I    +      F       I   
Sbjct: 133 ERLDPIKGFQKIFSKRAVVELTKSLFKMVVIGIIAYILFNNHMEHFPYFYDMTVMQIAVE 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  ++  + + +  L++LD  +   +    LKM+KQ++KDE KQ+ G+P ++++ K
Sbjct: 193 VGQLTWALIFRVGMALLFLSILDYVYQVWEHEQNLKMTKQQVKDEHKQTEGDPQVRSKMK 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R   + +MM     A ++ITNP H A+AL+Y + +  AP+++AKGQ  +A+K+++IA
Sbjct: 253 EKQREISKKRMMSEVPEADVVITNPVHIAVALKYDEGDT-APMVLAKGQGHVARKIKEIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +HN+ + E   LARSL+  V I   IP   Y+AVA+++  +Y  K
Sbjct: 312 EDHNVVVMENRQLARSLYFSVEIGDFIPEELYQAVAEVLAFVYRLK 357


>gi|325920558|ref|ZP_08182480.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC
           19865]
 gi|325548951|gb|EGD19883.1| flagellar biosynthetic protein FlhB [Xanthomonas gardneri ATCC
           19865]
          Length = 376

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    S
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFGLMALARGIGDGAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMVPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   ++ +++    +   ++  
Sbjct: 120 KAIMPDLNKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASLCISKGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREVCEQHRVSIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|312135835|ref|YP_004003173.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           owensensis OL]
 gi|311775886|gb|ADQ05373.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           owensensis OL]
          Length = 366

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 101/344 (29%), Positives = 185/344 (53%), Gaps = 1/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S     + +       + 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLMSILFLKFGYSLITQPLQAFSTYFFGNL 75

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               +E++     LL  +  ++ ++V+P  L  M         Q   ++    +K SF++
Sbjct: 76  D-YNIENVRDASRLLGLIVTTSLKIVLPFCLAVMFVATIVEWAQGSFLITAESLKISFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG KRI+SIN++V  +KS +K++++G             +L+    N  +I+  +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLVIGYTGYSYTKSFAKKLLEMYEMNVLTIVKFSF 194

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +   +++ + +    + ++D  +   Q+  KL M+K+E+K+E KQ+ GNP IK+R +  
Sbjct: 195 DSAVNLILWMSVMFFGIAIIDFTFQRWQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIRER 254

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M +   RA ++ITNPTHYA+AL Y   + DAP ++AKG++ IA K+++ A +
Sbjct: 255 QRRISLQRMFQQLPRADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAMK 314

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +NI I E   LAR+L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 315 YNIEIVENKELARALYNICEIGDFIPPELYQAVAEVLAYVYSLK 358


>gi|126175115|ref|YP_001051264.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS155]
 gi|125998320|gb|ABN62395.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
          Length = 376

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 164/340 (48%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ ++IE A  +G    S+E    + +++      +   P + +  + +   + +  + +
Sbjct: 13  PTGRRIEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D   +  +   ++   +  +   +LL ++      +       +   + P   ++S  
Sbjct: 72  IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G KR++ +  LV   K   K  +V     + L+  +  ++   S +    +YHA   + 
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K R + +    
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVRQMQHEL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+IA EHNI 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIAREHNIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    ++  IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351


>gi|322382375|ref|ZP_08056282.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153728|gb|EFX46103.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 378

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK E+A  +G    S E      +    + LL F       +   +   L
Sbjct: 29  SGEKTEKATPKKREEAKKKGQVAKSMEIPASLILFFTFLGLLLFSGFMKDRLLGLVTYTL 88

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                  +  ++++  +  HL   A  L+ P  ++ ++    +   Q   +     +K  
Sbjct: 89  EHDLVMNV-TLNNVQMMFLHLIGEAFLLLAPIFIISVVIAFFANYAQIGFLFTGEPLKMK 147

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F +++  EG KRI+S+  +++F+KS +K+I++  I+ +++      ++         +L 
Sbjct: 148 FNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQDMLP 207

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +      ++ + I   +  +  LD  +   ++   L+MSKQEIKDE K+S G+P+IK + 
Sbjct: 208 YIGSLTVQLGLKIGGVLIAIAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPLIKGKI 267

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A +IITNPTH+A+ALRY   E +AP ++AKG +LIA K++++
Sbjct: 268 RERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIALKIKEV 327

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E+ + I E   LAR+L+ QV I  AIP   ++AVA+++  +Y  K
Sbjct: 328 AKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 374


>gi|307610486|emb|CBX00058.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 130b]
          Length = 425

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++ +    +L   +    F       + S
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +        +  L   ++ +  L  L+ S    V+P LL+  +  + + L+    V + 
Sbjct: 61  IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R+++ +G KR+ S+   +  +K+F+K +LV +   + L      +L+   A 
Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFIEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+  +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352


>gi|325917832|ref|ZP_08180011.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535943|gb|EGD07760.1| flagellar biosynthetic protein FlhB [Xanthomonas vesicatoria ATCC
           35937]
          Length = 376

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 179/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+D    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESDDGGERTELPTEKRLREAREQGNFPQSRELSTAA-VFGAGVFGLMALAGGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   R  E    +      L L    +++P + + ++ G+   L+      + 
Sbjct: 60  VWMKTALSPDPRMREHPMALFGHFGDLLLQLLWVMLPLIGVCLLAGLAGPLMMSGLHFSS 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG    + ++++   +   ++  
Sbjct: 120 KAIMPDLTKLNPMNGIKRMWGSNSLAELVKSVLRLLFVGLAAWLCISKSLPGLRALVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIRETCEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|307824492|ref|ZP_07654717.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum
           SV96]
 gi|307734476|gb|EFO05328.1| flagellar biosynthetic protein FlhB [Methylobacter tundripaludum
           SV96]
          Length = 374

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 176/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ND    KTE P+ K++ DA  +G  P SRE + F  ++A    LL         +  
Sbjct: 1   MSDNDD---KTEDPTGKRLADARKKGQIPRSRELNTFVILMASATMLLTQGGTIGNGLLK 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       ++  + D   I   L    +    L+ P + + ++  I + +     V + 
Sbjct: 58  IMRTTFR-LSRAAIFDPDSITLYLKQAMIDTVMLLAPFMAVMVVVAIVTPISMGGWVFSW 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +  +  +++   GI RI++I  LV   K+ +KI+LV  +           +L     +
Sbjct: 117 EAIAFNPSKMNPIAGIARIFAIRGLVELFKALLKILLVFAVAVALYRSFIGELLSLGGES 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + HA   +   ++++   +  + ++D+ +        +KMSKQEIKDE K + G+P
Sbjct: 177 PIHSIGHALDIIGTCILLLSSSLILVVMIDVPYQLWDHSKNMKMSKQEIKDENKDAEGSP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K RQ+ +     + +MME   +A +I+TNP+HYA+AL+Y Q  N AP LVAKG +LIA
Sbjct: 237 EVKGRQRRMQMETAQRRMMEEVPKADVIVTNPSHYAVALKYDQNSNSAPKLVAKGVDLIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R  A    +P+   P LAR+L+    ++  IP   Y AVAQ++  +Y  K
Sbjct: 297 AQIRNAAIGSGVPLVASPPLARALYYSTELDREIPQGLYLAVAQILAYVYQLK 349


>gi|291288733|ref|YP_003505549.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885893|gb|ADD69593.1| flagellar biosynthetic protein FlhB [Denitrovibrio acetiphilus DSM
           12809]
          Length = 352

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 102/353 (28%), Positives = 189/353 (53%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ KK+ DA NEGN   SRE     ++L    +  ++    ++ +  
Sbjct: 1   MADE---QEKTEDPTGKKLTDAKNEGNVAKSRELPAAVTLLLVTFFFYYYGPYLMHGLAR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +            +H + L +   + +++L+ P + L ++ G+ S ++Q   +   
Sbjct: 58  LIREIFMMTNYEINTQSAHKIMLFS--IIESAKLLAPFMALVLVVGVASNVLQTGFMFTP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    +R+   +G  R +S  +LV  MKS  K+ +V  +  + + ++  T++     +
Sbjct: 116 KALSAKLERIDPIKGFGRFFSKKSLVELMKSLFKVFVVTYVAYLIVKKHIVTIISMADMD 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            + I       V +++  + L    + + D  +  +Q+   LKMSK E+K+E KQ+ G+P
Sbjct: 176 FYDIFSVFGKIVYEIMWKVSLLALFMALADFIFQKYQFKQDLKMSKHEVKEERKQAEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +SI R   R +MM+   ++ +++TNPTH+A+AL+Y   E+ APV++AKGQ L+A
Sbjct: 236 HVKGRIRSIQREMARKRMMDDVPKSDVVVTNPTHFAVALKYSPGEDRAPVVMAKGQRLMA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++++IA +  I + E+P +ARSLFK V I   IP   YKAVA+++  +   K
Sbjct: 296 LRIKEIAKQSGILVHEDPPIARSLFKTVDIGDEIPENLYKAVAEILALVDKFK 348


>gi|75675330|ref|YP_317751.1| flagellar biosynthesis protein FlhB [Nitrobacter winogradskyi
           Nb-255]
 gi|74420200|gb|ABA04399.1| Flagellar biosynthetic protein FlhB [Nitrobacter winogradskyi
           Nb-255]
          Length = 359

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 189/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DAL  G+   S+E + +  I    + L  F          
Sbjct: 1   MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLSTFSGSIGSGFEL 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+A++ Q +  D   ++ L   +    +  +   LLL MM  +   +IQ   V + 
Sbjct: 61  PLRNLIANSWQIR-TDGPGLLALAEQIGYRLAAALGVPLLLLMMAAVAGNVIQHRFVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++S+  G KRI+      NF K   K++ +G ++T  L      +   +  +
Sbjct: 120 ETLKPKLSKISMVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDAMVRLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P+++L        ++L  +++ +A + + D  + Y QW+ + KMS +E+K+E KQS G+P
Sbjct: 180 PNALLGITKSLTLQLLGAVIVMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + +   R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HIKARIRQLRHVRMKKRMMAAVPQASVIITNPTHYSVALSYERG-MSAPVCVAKGVDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+IP+ E   LAR+L+  V I+  +P   Y AVA++I  +   K
Sbjct: 299 LKIREIAREHDIPVVENVPLARALYAAVEIDDEVPVEHYHAVAEIIGYVMGLK 351


>gi|148256775|ref|YP_001241360.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. BTAi1]
 gi|146408948|gb|ABQ37454.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. BTAi1]
          Length = 359

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 194/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  ++KTE P+ K+++ AL  G+   S+E + +  I A  + +  F      +V  
Sbjct: 1   MADEDDSEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMSTFSGSIGTAVLV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L+A++      D + ++ L   LS +    +   +L+ M+  I   ++Q   V + 
Sbjct: 61  PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+F ++S   G KR++      NF K   K++L+GT++ + L      +   +  +
Sbjct: 120 EPLKPNFGKISPLAGAKRLFGKQAAANFAKGIFKLVLLGTVMVMILWPERLRLESLLHMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L       + ++  ++  +A + + D  + Y QWY + KMS QE+K+E KQS G+P
Sbjct: 180 VSELLGVTISLTKHLMGSVVALLALVAIGDYLFQYRQWYERQKMSVQEMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I + R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALAYERG-MSAPVCVAKGVDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IPI E   LAR+L+  V I++ IP   Y AVA++I  +   +
Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDAEIPVEHYHAVAEIISYVMGLR 351


>gi|89098625|ref|ZP_01171507.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911]
 gi|89086587|gb|EAR65706.1| flagellar biosynthesis protein B [Bacillus sp. NRRL B-14911]
          Length = 360

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK +D+  +G    S++ +    +LA  ++LLF        +   L    
Sbjct: 12  SGEKTEKATPKKRQDSRKKGQVAKSQDVNTALVLLAVFLFLLFAGGYLKNIIMYLLTHSF 71

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                 +L + S++  +   +    +  + P +L+ M+ G  +  +Q   + +   ++  
Sbjct: 72  QEFMLMELTE-SNVQAIFLAVMKELALFLGPVMLIAMIAGAAANYMQVGFLFSTEAIQFK 130

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +++   +G KRI+S+  +V  +KS +KI  VG +  + L      +L     +P + L 
Sbjct: 131 LEKIDPIKGFKRIFSMRAIVELLKSVLKIGFVGAVTFVVLWMRIDEILMLSQKSPGAALI 190

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  ++ +     +  L+VLD  +  + +   ++MSKQ+IKDE K   G+P+IK++ 
Sbjct: 191 ILASLTVQMGLFASAALLFLSVLDYLYQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKI 250

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   R     +MM+    A ++ITNPTH+A+AL+Y + + DAP +VAKG + +A+K++ I
Sbjct: 251 KQKQREMAMSRMMQEVPNADVVITNPTHFAIALKYDEEKQDAPYVVAKGADYVAQKIKYI 310

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E+ +   E   LAR+L+ Q  I S IP  F+K VA+++  +Y  K
Sbjct: 311 AKENEVITVENRPLARALYSQTEIGSTIPEEFFKTVAEILAYVYRTK 357


>gi|312621587|ref|YP_004023200.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202054|gb|ADQ45381.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 366

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 103/344 (29%), Positives = 188/344 (54%), Gaps = 1/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  I  +        ++ 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFFSN- 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               LEDIS    LL+ +  ++ ++V+P  +  M         Q   ++    +K SF++
Sbjct: 75  LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAAIVEWAQSSFLITGQSLKMSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG KRI+SIN++V  +KS +K++++G             +L+    N  +I+  +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYCYTQTFAKKLLEMYEMNVFTIVRFSF 194

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ +  
Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA+K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           H I I E   LAR+L+    +   IPP  Y+AVA+++  +Y  K
Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358


>gi|222530120|ref|YP_002574002.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456967|gb|ACM61229.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 366

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 103/344 (29%), Positives = 189/344 (54%), Gaps = 1/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  I  +        ++ 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIVPLQQGSKYFFSN- 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               LEDIS    LL+ +  ++ ++V+P  +  M   +     Q   ++    +K SF++
Sbjct: 75  LNYSLEDISDASKLLSFIITTSLKIVLPFCVTIMFVAVIVEWAQSSFLITGQSLKMSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG KRI+SIN++V  +KS +K++++G             +L+    N  +I+  +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSVLKVLIIGYTGYFYTQTFAKKLLEMYEMNVFTIVRFSF 194

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ +  
Sbjct: 195 GSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIREK 254

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA+K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKQEAIK 314

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           H I I E   LAR+L+    +   IPP  Y+AVA+++  +Y  K
Sbjct: 315 HRIEIVENRELARALYNMCEVGDFIPPELYQAVAEVLAYVYSLK 358


>gi|15615002|ref|NP_243305.1| flagellar biosynthesis protein FlhB [Bacillus halodurans C-125]
 gi|10175059|dbj|BAB06158.1| flagella-associated protein [Bacillus halodurans C-125]
          Length = 363

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 179/346 (51%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D+  +G    S + +    +L   ++L  F  P +      L +   
Sbjct: 14  QEKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLCVFLFLWLFGGPLLGGTLEKLLIHTF 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +          +  L+  +++ A+ +++P + + ++ G+ +  IQ  P+     +K   
Sbjct: 74  ESYLLMDVTEESVAELMFEITMEAAIVLLPIMAIALIAGVLASYIQVGPLFTTEPLKMKL 133

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++   +G KRI+S+  LV F+KS +KI+L G      +  +   ++     +  +    
Sbjct: 134 SKIDPIKGAKRIFSVRALVEFLKSLLKIVLTGLAAFSIVWFSLEDVMLLSQKSVENSFVT 193

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + I+I + +  L++ D  +  +    +++MSKQ++KDE K   G+P +K+++K
Sbjct: 194 VAQLTALLGILIAILLLILSIPDYLYQRYDHEKQIRMSKQDVKDEHKNVEGDPKVKSKRK 253

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
                    +MM+   +A ++ITNPTHYA+AL+Y Q++ DAPV+VAKG + +A K++ +A
Sbjct: 254 QKQMEMAMQRMMQEVPKADVVITNPTHYAIALKYDQSKMDAPVIVAKGVDYVAFKIKSLA 313

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +HN+   E   LAR+L+ Q  I   +P   +KAVA+++  +Y  K
Sbjct: 314 KQHNVVTVENKPLARALYDQADIGDQVPEQLFKAVAEVLAYVYRLK 359


>gi|320354335|ref|YP_004195674.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM
           2032]
 gi|320122837|gb|ADW18383.1| flagellar biosynthetic protein FlhB [Desulfobulbus propionicus DSM
           2032]
          Length = 355

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  A   +TE+PS+K+  D   +G    SRE    +     L++ +FF +P  +  T 
Sbjct: 1   MAEEPASGERTESPSAKRRADFRKKGQVAQSREVQTAALFTLLLLFWVFF-APIFWDGTK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  +L   +       S ++ L   L +S + ++ P  L+ ++ G  +  +Q   +   
Sbjct: 60  EMVAVLWRNSGDYAITTSSLMQLGYFLGVSLAMILAPLFLVALLVGFLATFLQIGWLFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++   +G+ R +S  +LV  +KS +K+ L+G I   ++       L      
Sbjct: 120 EPLIPDLTKLDPIKGMGRFFSKRSLVEVIKSLLKVGLIGWIAYKTVAGEMDQALLLTEMP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +   T   V+  +   +  L +LD  +   +   K+KM+KQE K+E+K++ G+P
Sbjct: 180 LDDTILYLAKTSALVMAKVAAIMIVLAILDYAFVRWEMEEKMKMTKQEQKEEMKETEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK++ +SI +   R +MM A   A ++ITNPTH A+A++Y     DAP+++AKGQ L+A
Sbjct: 240 HIKSKIRSIQQQMARRRMMAAVPTADVVITNPTHIAVAIKYEAGTMDAPLVLAKGQELVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+R+IA E++IP+ E P +AR L  +V +  AIP   +KAVA+++  +Y  K
Sbjct: 300 EKIREIARENDIPLVENPPVARLLHSKVEVGQAIPEELFKAVAEILAYVYSLK 352


>gi|285018167|ref|YP_003375878.1| flagellar biosynthesis pathway component flhb protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473385|emb|CBA15890.1| probable flagellar biosynthesis pathway component flhb protein
           [Xanthomonas albilineans]
          Length = 376

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 171/353 (48%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSEN+    +TE P+ K++ +   +GN P SRE +  +   + +  L+           +
Sbjct: 1   MSENEEGAERTEQPTEKRLRETREQGNIPRSRELATAAVFSSSIFALMGMSGSLTAGAVA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L        +    +      L +    +V+P + + +  G  + L+      + 
Sbjct: 61  WMKHAL-QPDPHLRDTPQALFGYFGDLLIGLFWVVLPLIGICVAAGFIAPLLMGSLRFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+ R+Y   +LV  +KS +++  VG    + + +    +   +   
Sbjct: 120 QALIPKLDRLNPMAGLARLYGTESLVELLKSMLRMGFVGGAAFLCIWKGLDGLRGLLQQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H       +L+     +A L  +D  +    + +KLKM+++E++ E+K++ G+P
Sbjct: 180 LEQAIGHGLGFTLSMLLYTAGALALLAAIDAPYQKWHYINKLKMTREEVRREMKENDGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y      AP ++AKG + IA
Sbjct: 240 EVKGRIRQMQMQMSQRRMMEAVPKADVVVVNPTHYAVALKYESGRMRAPTVLAKGVDEIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  +H + +   P LAR+L+++  +   IP   Y AVAQ++  +Y  +
Sbjct: 300 FRIREVGEQHRVAVVSAPPLARALYREGQLGKEIPVRLYSAVAQILSYVYQLR 352


>gi|149194192|ref|ZP_01871290.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus
           TB-2]
 gi|149136145|gb|EDM24623.1| flagellar biosynthetic protein FlhB [Caminibacter mediatlanticus
           TB-2]
          Length = 351

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ KK+E+A  EGN   S E S F  +L   I +LF+     + +  
Sbjct: 1   MADD---LEKTEEPTPKKLEEAKKEGNIAKSMEVSGFVVLLVGSIIILFYLKYVTFYLEE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +       ++I     L+   +     L+ P  +  ++ GI   ++Q   +  +
Sbjct: 58  YFRYFYSYIGVELTKNI--FFNLIIKSTYYFFILIAPIFIALILAGIIGNVMQFGFLFTI 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  ++++  +G+KR++S+  LV  +K+ +K  +   +           +      N
Sbjct: 116 KPILPKLEKINPIKGLKRLFSVKTLVEGLKTTLKTFIAFLVGFTLFYNFLQEIPRLELMN 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L       ++D  +  + +   L+MSKQEIKDE KQ+ GNP
Sbjct: 176 FFEQLKWFEDKAVILIFSLLGVFFIFAIIDFTYQKYTYKKSLRMSKQEIKDEYKQTEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   + +MM    +A ++ITNPTHYA+A+RY +T+++AP +VAKG + +A
Sbjct: 236 EVKAKIRQLQREMAKKRMMAEVPKADVVITNPTHYAVAIRYDKTKDEAPRVVAKGVDNLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA E  + I E P LAR L+K V +   IP   +KAVA+++  +Y  K
Sbjct: 296 IKIKEIAREAGVMIVENPPLARELYKSVEVGEIIPQKLFKAVAEVLAYVYRAK 348


>gi|222053619|ref|YP_002535981.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32]
 gi|221562908|gb|ACM18880.1| flagellar biosynthetic protein FlhB [Geobacter sp. FRC-32]
          Length = 354

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 191/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D   +KTE P++KK+ +A  +GN P SR+ +   S+ + +I L          + S
Sbjct: 1   MSEED-KHSKTEQPTNKKVSEAKEKGNIPRSRDLTSTLSLTSGIIALYVTGGFMASKLKS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               + AS + ++  +   I  L+  L L+ + ++ P LL+ ++  + + + Q     + 
Sbjct: 60  SSAEIFASLSTKEFTEAG-IYMLMLKLFLTMTLVLAPFLLIVIVASLAAEVSQGGISTSF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +     +++   GIKR+++ + +V  +KSF+KII+VG +    + +   +++  +  +
Sbjct: 119 EKIGFDLDKLNPVHGIKRLFNKDAVVEMLKSFLKIIIVGYMAYKVMRDEVDSVIYLVDMD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +I         K++I     +  L VLD+ +   ++   LKM+KQE+KDE K + G+P
Sbjct: 179 IPAIAEFVSHISFKLVIHTCGVLFILAVLDLAFVKWRFIENLKMTKQEVKDENKDAEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + K     + R +M      A +++TNPTH+A+AL+Y + +  APV++AKG + +A
Sbjct: 239 HIKGKIKQKQYDQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGADFLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++IA E NI + E   LAR LF QV     IP   Y AVA+++  +Y  K
Sbjct: 299 QKIKEIARESNITLVENRPLARELFAQVKEGEEIPEALYAAVAEILAYVYKLK 351


>gi|251797425|ref|YP_003012156.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
 gi|247545051|gb|ACT02070.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
          Length = 365

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 179/347 (51%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK ++A  +G    S +      +L          S     + S    L 
Sbjct: 14  SQEKTEKATPKKTQEARKKGQIAKSNDLPSSMILLFTFATFAALGSYYKTRIMSVFQELF 73

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +     +   ++I+ L   L++     + P   + ++  I   ++Q   +L    +KP 
Sbjct: 74  DNWLTMDV-TTANIMPLFDKLAVDMLMFLAPIFAIVVIVAILGNVVQFGFLLTGESLKPK 132

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F +++   G K+I+S+  +V F+KS +K++++G ++  ++  ++  +L   S +   I  
Sbjct: 133 FSKLNPINGFKQIFSMRTVVEFLKSILKLLIIGILVYRAIWSDWDKILVLSSLSVQQIFS 192

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  K+ +     +  L   D  +  ++    L+MSKQ+IKDE K+S G+P+IK + 
Sbjct: 193 FTAGLTVKLGLETGAVLVILAFADYMYQRYEHAKSLRMSKQDIKDEYKKSEGDPLIKGKI 252

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A ++ITNPTH+A+AL+Y  ++ +AP+++AKG + +A ++R++
Sbjct: 253 RERQRRMAMQRMMQEVPKADVVITNPTHFAIALQYDASKMEAPLIIAKGMDHLALRIREV 312

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EH + + E   LAR+L+++  I  +IP   ++AVA+++  +Y  K
Sbjct: 313 AKEHGVVMMENKPLARALYERADIGDSIPADLFQAVAEVLAAVYKMK 359


>gi|306820134|ref|ZP_07453782.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551912|gb|EFM39855.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 379

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 109/345 (31%), Positives = 182/345 (52%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KK ED   +GN   SRE +  +S+ A +  +  F    +  +    +     
Sbjct: 27  EKTEEATPKKKEDTRKKGNVLQSRELTGAASLFAAVFAINTFSKEILKVIVDAWNYYTGM 86

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               +L +      L T L +   + ++  ++  ++        Q   +     ++P  +
Sbjct: 87  LNSFELTNQMQAYKLFTTLLIFCVKAMLFIIIPVVLVAFLVQKAQVGNIFTAETIRPKLE 146

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R+S+  G KR++S+ + V  +KS +KI+LVG +    + +N   ++   S N     Y  
Sbjct: 147 RISILSGFKRMFSMQSTVTLIKSLLKIMLVGYVGYAYIKDNMPLVMKSFSLNDKQFSYML 206

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           F     + + ++  I  L + D  +  H +   ++MSKQEIKDE KQS G+P IK++ K 
Sbjct: 207 FHFSINMALRMVYVIIALGIFDYVYQRHSYNKNIRMSKQEIKDEYKQSEGDPQIKSKIKE 266

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R     +MM+   +A +IITNPTH+A+AL+Y + + DAP +VAKGQ+ IAKK+R+ A 
Sbjct: 267 RQRQSAMRRMMQDLPKADVIITNPTHFAVALKYDEDKYDAPYVVAKGQDFIAKKIREKAK 326

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           E +IPI E   LAR+L+ ++ I S I P  Y+AVA+++  I+  K
Sbjct: 327 ELDIPIVENKPLARALYSEIDIGSVITPQLYEAVAEVLAYIFSLK 371


>gi|332305672|ref|YP_004433523.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173001|gb|AEE22255.1| flagellar biosynthetic protein FlhB [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 374

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 171/353 (48%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ +    KTE P+SKKI D+  +G    S+E S    ++      +        ++  
Sbjct: 1   MSDAN---EKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSAAAFIMMGGQIAKAIYL 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  + ++ +  D +H+         + +  V+  +++    GI   +         
Sbjct: 58  VTQRTF-TLSRDETYDFTHMFQAWGSAIETVAGPVMLYMVIITAAGIYGNIALGGYNFTW 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ +N LV  +K+  K+I+V  +  I++       L      
Sbjct: 117 QGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVVMGMAYIAMLVFKDEALHLDLEL 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L+HA   +    +M+   +  +   D+ +  ++   ++KMSKQE+KDE K + G+P
Sbjct: 177 YPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKDENKNAEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +KNR + +      ++MM+    A +++TNPTHY++AL+Y Q    APVLVAKG + +A
Sbjct: 237 QVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVLVAKGVDEMA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +RKIA  H +PI   P LAR+++    + S IP   + AVAQ++  ++  K
Sbjct: 297 MHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPTQLFMAVAQILAYVFQLK 349


>gi|255021385|ref|ZP_05293433.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
 gi|254969248|gb|EET26762.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
          Length = 375

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 191/354 (53%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +   +TEA + KK EDA  +G  P SRE S  + +      LL+     I ++ +
Sbjct: 1   MAEEQS-QERTEAATPKKREDARKKGQVPRSRELSTSALL-LLSASLLYGLGSEIQTMAT 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D        T   + +   ++  L  ++  A   V+P  L  M+  + + +       + 
Sbjct: 59  DFLRAGLRLTPAVMSNHQDLLRHLVQMAGLALSDVLPLWLALMLVVVLASIALGGWNFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F  +   EGI+R++S    +  +K+ +K ++VG I    +      +L  I  +
Sbjct: 119 KTLIPNFSHLDPIEGIQRLFSRRGFLELVKAALKTLVVGGIGVTVIWAQRGELLGLIQIS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P S +         V +++ +    + + D+ +    +  KLKMS+Q+IKDE+K+  GNP
Sbjct: 179 PKSAMVSLLSMSGLVFLIMAVGTLLIVLFDVPFQLWSFNEKLKMSRQDIKDEMKEMDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +S+ R   R +MM A   A++++TNPTHYA+ALRY+++EN APV++AKG   +A
Sbjct: 239 QIKTKVRSMQREMARRRMMAAIPSASVVVTNPTHYAVALRYVESENRAPVVLAKGAGNVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
            ++R++A EH +P+ E P LAR+L+  V +   IP + Y+AVA+++  ++  ++
Sbjct: 299 LRIRELAQEHGVPLVEAPPLARALYHHVELEQEIPALLYRAVAEVLAYLHQLRL 352


>gi|109899339|ref|YP_662594.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica
           T6c]
 gi|109701620|gb|ABG41540.1| flagellar biosynthetic protein FlhB [Pseudoalteromonas atlantica
           T6c]
          Length = 374

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 171/353 (48%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ +    KTE P+SKKI D+  +G    S+E S    ++      +        ++  
Sbjct: 1   MSDAN---EKTEDPTSKKITDSRKKGQVARSKELSTALVLVFSAAAFIMMGGQIAKAIYL 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  + ++ +  D +H+         + +  V+  +++    GI   +         
Sbjct: 58  VTQRTF-TLSRDETYDFTHMFQAWGSAIETVATPVMLYMVIITAAGIYGNIALGGYNFTW 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   +++   G KR++ +N LV  +K+  K+I+V  +  +++       L      
Sbjct: 117 QGAAPKANKLNPLAGFKRMFGMNGLVELLKAIAKVIVVMGMAYVAMLVFKDEALHLDLEL 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L+HA   +    +M+   +  +   D+ +  ++   ++KMSKQE+KDE K + G+P
Sbjct: 177 YPQNLFHAMDLISWAFLMMCCALIPIAAFDVPYQSYKHNKEMKMSKQEVKDENKNAEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +KNR + +      ++MM+    A +++TNPTHY++AL+Y Q    APVLVAKG + +A
Sbjct: 237 QVKNRIRRLQFQAAANRMMQEVPTADVVVTNPTHYSIALKYDQQGTRAPVLVAKGVDEMA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +RKIA  H +PI   P LAR+++    + S IP   + AVAQ++  ++  K
Sbjct: 297 MHIRKIADAHEVPIVASPMLARAIYYSTEVESEIPAKLFMAVAQILAYVFQLK 349


>gi|320177760|gb|EFW52748.1| Flagellar biosynthesis protein FlhB [Shigella boydii ATCC 9905]
          Length = 383

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 177/335 (52%), Gaps = 1/335 (0%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           +E A  EG  P SRE +    +L  +  + F        ++  L   L       + D +
Sbjct: 18  LEKAREEGQIPRSRELTSLLILLVGVCVIWFGGVSLARRLSGMLSAGL-HFDHSIINDPN 76

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
            I+  +  L   A   ++P +   ++  + S ++    V +   ++P F +++   GIKR
Sbjct: 77  LILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKR 136

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++S       +K+ +K ILVG++    L  ++  M+  ++ +P + + +A   V    ++
Sbjct: 137 MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 196

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           ++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K R + + R+  R +M
Sbjct: 197 VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 256

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           M    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R+I  E+N+P  E P
Sbjct: 257 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 316

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 317 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351


>gi|209964223|ref|YP_002297138.1| flagellar biosynthesis protein FlhB [Rhodospirillum centenum SW]
 gi|209957689|gb|ACI98325.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
          Length = 359

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 197/354 (55%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+   D+KTE P+ KK+ DA  +G    S E      + + L+ +L         +  
Sbjct: 1   MAEDQDQDSKTEEPTDKKLSDAREKGQVAKSMEVGNLFILASGLVMVLLLLPWSGRILWD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +       L   + +  +LT L+L  +  + P L+L ++  + + +IQ   + + 
Sbjct: 61  AMMPFVERP-HAILMAPAALGDVLTDLTLDIAFALAPTLVLLLLAALAAPIIQVGLMFSA 119

Query: 121 NHV-KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            +V K    +V+   G+K   S+ NLV F+KS  K++LVG ++++ L   + ++  F++ 
Sbjct: 120 ENVFKFDLNKVNPLTGLKNKVSLKNLVEFLKSLGKLVLVGIVVSVLLLPLWTSIEHFLAL 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              S++        K++  +++ +  +   D  +  +Q+  +++M+KQE+KDE KQ+ G+
Sbjct: 180 PLPSVIVETRHEAAKLIAAVVIVLGAIAGADYAFQRYQFMQQMRMTKQEVKDEYKQTEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK++ + +   R R++MM A   A +++TNPTH+A+AL+Y  +   AP +VAKG +LI
Sbjct: 240 PLIKSKIRQLRMQRSRNRMMAAVPSADVVVTNPTHFAVALKYDASAMSAPRVVAKGADLI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           AK++R++A E  +P+   P LAR+LF    I+  IP   YKAVAQ+I  ++  K
Sbjct: 300 AKRIRELAEEAGVPVISNPPLARALFATAEIDEEIPAEHYKAVAQVISYVFKLK 353


>gi|229918645|ref|YP_002887291.1| flagellar biosynthesis protein FlhB [Exiguobacterium sp. AT1b]
 gi|229470074|gb|ACQ71846.1| flagellar biosynthetic protein FlhB [Exiguobacterium sp. AT1b]
          Length = 364

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 177/346 (51%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ED+  +G    S + +   ++ A  + L FF       + + +  LL 
Sbjct: 17  GEKTEKATPRKREDSRKKGQVAKSADLTGAFALFAMFLMLSFFGPVIGQQLLTLISDLL- 75

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           S           +  ++  L L    ++ P  ++ ++FGI    +Q   + +L  ++P  
Sbjct: 76  SPEYLLFNVTGGMSDMVVDLMLRVGLILAPFFIVAVVFGILINYLQIGTLFSLEAIQPKL 135

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R+   +G+KRI S+  +V F+KS  K++++ T     L +N   +           +  
Sbjct: 136 ERIDPIKGVKRIVSMKAVVEFLKSLFKLLIILTTAVAVLWKNQKELSRMAVEQVRESIVA 195

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 ++ + + + +  L  LD  +    +   ++MSKQ+IKDE K + G+P+IK++ K
Sbjct: 196 LASITIELGLWVSVALLALAFLDFFYQRFDFEKSIRMSKQDIKDEYKNTEGDPLIKSKIK 255

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+ +RY  T++ AP++VAKG + +A  +R +A
Sbjct: 256 QQQREMAMRRMMQEIPNADVVITNPTHYAVVIRYDDTKDFAPLVVAKGVDRVAFHIRDVA 315

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++ I E   LAR+L+ Q+ I   +   FY+A+A+++  +Y  K
Sbjct: 316 KEHDVAIVENKPLARALYAQIDIGEVVDESFYQAIAEVLAFVYQMK 361


>gi|77165624|ref|YP_344149.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC
           19707]
 gi|254433995|ref|ZP_05047503.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27]
 gi|76883938|gb|ABA58619.1| Flagellar biosynthetic protein FlhB [Nitrosococcus oceani ATCC
           19707]
 gi|207090328|gb|EDZ67599.1| flagellar biosynthetic protein FlhB [Nitrosococcus oceani AFC27]
          Length = 377

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ A   +TE P+ K+ E+A  +G  P SRE S    +L+  + L+    P +  +  
Sbjct: 1   MADSSA-QERTEQPTPKRQEEARKKGQVPRSRELSTTVLLLSSALGLVLIGEPLLQGLAD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    + ++ +    +         A +++ P L L ++  + + L+      + 
Sbjct: 60  LMRQGL-QLERAQIFEPKAAILQFQQGVGEAVKIITPFLALTLIAALAAPLLMGGWSFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   +++++  +G+KRI+     +  +K+ +K +L+  +  +        ++      
Sbjct: 119 QSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVGCLLFWLFSPDLIALGRQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++     +   L+ +   +A + V+D  +       +LKM++QE+K+E K++ GNP
Sbjct: 179 FVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQGWNHTRQLKMTRQEVKEEHKETDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     +MM A  +A +++ NPTHYA+AL Y Q +  AP +VAKG + +A
Sbjct: 239 ELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQGAPRVVAKGVDQVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R +A  +N+P+   P+L+R+++    ++  IP   Y+AVAQ++  +   +
Sbjct: 299 IKIRTVAAGNNVPVLSAPALSRAIYHSTKLDQEIPAGLYRAVAQVLAYVLQLR 351


>gi|291562038|emb|CBL40854.1| flagellar biosynthetic protein FlhB [butyrate-producing bacterium
           SS3/4]
          Length = 357

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 107/348 (30%), Positives = 189/348 (54%), Gaps = 2/348 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
            +   KTE P++KK  DA  EGN   SR+ +    ILA + + +  + P IY    +   
Sbjct: 3   QSGQEKTEQPTAKKRRDARKEGNIFQSRDVAT-VVILAGIFFGIRIWLPFIYGQMKNYMT 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            +     R  ED+     +   LS+   +  +P LLL ++ GI ++ +Q    ++   ++
Sbjct: 62  WVIDGAARSSEDMLSASLVFVTLSV-FLKCALPLLLLALLLGIVAHGVQTRFNVSFKSIR 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P + R++   GIKR++S+ N V  +K+ +KI L+  ++   L ++   M   I  NP + 
Sbjct: 121 PKWNRLNPLSGIKRLFSMKNAVELVKNSIKITLLLVLLYNILKQDLQPMASMIDMNPAAS 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
             +    +  +LI + +    +   D  +   ++  +L+M+KQE+KDE KQ+ GNP IKN
Sbjct: 181 AAYMMKMIFDLLIRVCIAFMVIAFGDYLYQRWEYEKELRMTKQEVKDEYKQTEGNPEIKN 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R KS+ R     +MM+   +A +II NPTH A+AL+Y    ++APV++AKG + +A ++ 
Sbjct: 241 RIKSLQRQMASSRMMQKVPQADVIIRNPTHVAIALKYDPDHDNAPVVLAKGLDELALRIV 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           K+  E+N+   E   LAR+++    ++  IP  FY AVA+++  +Y +
Sbjct: 301 KVGEENNVYTIENKPLARAMYNSCELDRPIPSEFYTAVAEILVYLYKQ 348


>gi|166712016|ref|ZP_02243223.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 376

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 179/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDGAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S      E+   +     +L L    +++P + + +  G+   L+      + 
Sbjct: 60  AWMKTALSPDPTMRENPMALFGHFGNLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|83858790|ref|ZP_00952312.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853613|gb|EAP91465.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
          Length = 358

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 106/350 (30%), Positives = 178/350 (50%), Gaps = 1/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +    KTE P+ +K+  A  EG+ P S+E S + ++ A L  L F     + ++  
Sbjct: 1   MAEGEDKSEKTEEPTDRKLRQAREEGDVPKSQEVSGWFTLTAGLAMLAFLAPGMVTNLAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L V LA   +  + D +  V L    ++    +V       ++  I   L+Q   +   
Sbjct: 61  MLLVFLAQPHELAV-DPTGAVTLAAATAMRLVLVVGLAFATLLVAAIFGNLVQTGVMFTP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++   +G+ R++     +NF K   K+ +VG  I   L      +       
Sbjct: 120 KKIAPKLDKLDPIKGLTRMFGPEGWMNFFKGVGKMTIVGLAIAAVLWPRRNELAVLPGVA 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  IL   +    +++I  L+    + VLD  +   Q+  + KMS++EI+DE+K + G+P
Sbjct: 180 PIGILQEVYSAAIQLMIAALIAYTAIAVLDFLFQRKQYIDRHKMSRKEIRDEMKDTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +I+ + + I + R + +MM     A ++ITNPTHYA+AL Y Q    AP+ VAKG + +A
Sbjct: 240 MIRAKLRQIRQERAQRRMMARVPDAAVVITNPTHYAVALEYEQGRTPAPICVAKGTDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R +A EH+IPI E+P LAR LF  V +   IPP  + AVA++I  + 
Sbjct: 300 LRIRALAEEHDIPIVEDPPLARGLFASVELEEVIPPEHFTAVAKIIGYVL 349


>gi|332981452|ref|YP_004462893.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1
           BON]
 gi|332699130|gb|AEE96071.1| flagellar biosynthetic protein FlhB [Mahella australiensis 50-1
           BON]
          Length = 361

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 175/348 (50%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D KTE P+ K+  +A  +G    S E ++ + +LA  + +   F   +  +T+    +
Sbjct: 11  ADDEKTEQPTPKRRREAREKGQVFKSAEINMVAVLLASFLVIKAIFPSLLQILTAYERQI 70

Query: 66  LASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
              A     +    ++  L  +  +   + +   +    + GI   + Q   V +   + 
Sbjct: 71  YTMAGSADSIYTSENLSTLFINTIIQIGKGLWIFIFGICIIGIAVNIAQVGFVFSAKPLA 130

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
                ++   G KRI+S   +   +KS +KI ++G +    +  +    L         +
Sbjct: 131 MDLGHLNPAAGFKRIFSKRAVNELVKSILKIAIIGYVAYTEIRNDINIFLAMSREGTSVM 190

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +Y     V    I +   +AT+ VLD  +   ++   L+MSKQE+K E K++ G+P IK 
Sbjct: 191 IYDMVSIVLNAAIKLTAVMATVAVLDYIFQRREYERNLRMSKQEVKQEFKETEGDPQIKA 250

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R + I R     +MM+   +A ++ITNPTH+A+ALRY    + APV++AKG + +A++++
Sbjct: 251 RIRQIQRQLAMMRMMQQVPKADVVITNPTHFAVALRYDAETDQAPVILAKGVDYMAQRIK 310

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           ++A +  +PI E   LAR+L+  V I   IPP FY+AVA+++  +Y+ 
Sbjct: 311 EVARQSRVPIVENRELARNLYYAVDIGQIIPPQFYEAVAEVLAYVYNM 358


>gi|218133682|ref|ZP_03462486.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991057|gb|EEC57063.1| hypothetical protein BACPEC_01551 [Bacteroides pectinophilus ATCC
           43243]
          Length = 386

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 94/358 (26%), Positives = 182/358 (50%), Gaps = 7/358 (1%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS- 60
           +++     KTE P++KK+ DA  EG    S+E      +LA  + + F+       +   
Sbjct: 20  AKDGPGGEKTEVPTAKKLNDARKEGQVAKSKEIITALMLLALFVVIKFYIGNLGQQMIEC 79

Query: 61  -----DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
                DL   + S ++  +  +     +   L+ +   +++P + L ++  I    +Q+ 
Sbjct: 80  FSEFYDLFGKIISNSEYGMRMVDATGVVSLGLT-TVLNMIVPFIALAVVIAILGNALQQK 138

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            ++    ++P   ++S   G+KR++++  L    KS   I ++  +I  ++ +    +  
Sbjct: 139 WMVTTKPLQPKLSKISPISGLKRMFNVKQLFEVGKSVAMIAVMSYVIYTTVKDKLGVLYT 198

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           F + + +  L      +  + I I      +  +D+ +  H++   +KM+KQE+KDE K 
Sbjct: 199 FYNISLYEALEIVGDIIVDLGIKISAVFLVIGFVDLIYQRHKFKEDMKMTKQEVKDEFKN 258

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P +K + +   +   R +MMEA  +A ++ITNPTH+A+AL+Y   +  APV++AKG
Sbjct: 259 TEGDPQVKGQIRRRMQQVSRRRMMEALPQADVVITNPTHFAVALKYEANKGQAPVVIAKG 318

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +A  ++  A E+ I I E   LAR L+  V I + IPP  Y+AVA+++  +Y  K
Sbjct: 319 ADYLAFDIKAKAKEYGIEIVENKPLARILYNNVEIGAQIPPELYQAVAEVLAFVYSLK 376


>gi|39936944|ref|NP_949220.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           CGA009]
 gi|192292772|ref|YP_001993377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           TIE-1]
 gi|39650801|emb|CAE29324.1| putative flagellar biosynthetic protein flhB [Rhodopseudomonas
           palustris CGA009]
 gi|192286521|gb|ACF02902.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           TIE-1]
          Length = 357

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 193/353 (54%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   D KTE P+ K+++DAL  G+   S+E + +  I    + L  F       + +
Sbjct: 1   MSED--SDEKTEEPTQKRLDDALKRGDVVKSQEVNTWFLIAGATLVLSSFHESIGTGILA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L+  +   ++ D   ++ L   LS +    +   LL+ ++  I S +IQ   V + 
Sbjct: 59  PMRNLIEKSWMLRV-DGDGLIALAKSLSYATLAAIGIPLLMLVIVAIASNMIQHRLVFSA 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  EG KR++    + NF+K   KI+ +G ++   L   +  +   +  +
Sbjct: 118 EALTPKFSKLSPLEGAKRLFGKQAMANFLKGLFKIVALGIVMVAVLYPEHDRLDALLKMD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L        K+L  ++  +A + V D  + Y QW+ K KMS QEIK+E KQS G+P
Sbjct: 178 VSALLGVTVALTLKLLGAVVAMLAFVAVGDYFFQYRQWHEKQKMSLQEIKEEFKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + +   R++ +MM     A+++ITNPTH+++AL+Y +    AP+ VAKG + +A
Sbjct: 238 HIKGRLRQLRYQRMKKRMMAEVPNASVVITNPTHFSVALKYERG-MSAPICVAKGVDAVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH++PI E   LAR+L+  V I+  IP   Y+AVA++I  + + K
Sbjct: 297 FKIREVAKEHDVPIVENVPLARALYATVEIDEEIPVEHYQAVAEVIGYVMNLK 349


>gi|188576802|ref|YP_001913731.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576995|ref|YP_001913924.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521254|gb|ACD59199.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521447|gb|ACD59392.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 376

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDGAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S      E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  AWMETALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|153001439|ref|YP_001367120.1| flagellar biosynthesis protein FlhB [Shewanella baltica OS185]
 gi|304409946|ref|ZP_07391565.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|307302341|ref|ZP_07582099.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
 gi|151366057|gb|ABS09057.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS185]
 gi|304351355|gb|EFM15754.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|306914379|gb|EFN44800.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
          Length = 376

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 164/340 (48%), Gaps = 1/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+ +++E A  +G    S+E    + +++      +   P + +  + +   + +  + +
Sbjct: 13  PTGRRLEQAREKGQIARSKELGTAAVLISAACGF-YMLGPSLATSLTRVFETVFTMDRAQ 71

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           + D   +  +   ++   +  +   +LL ++      +       +   + P   ++S  
Sbjct: 72  IFDTEEMFNVWGVVASEIAWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKASKMSPA 131

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G KR++ +  LV   K   K  +V     + L+  +  ++   S +    +YHA   + 
Sbjct: 132 AGFKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNDIMLLSSDHLPGNVYHALDLLV 191

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            + I++   I  + V+D+ +       +LKM+KQE+KDE K + G P +K+R + +    
Sbjct: 192 WMFILLCSSILLIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEVKSRVRQMQHEL 251

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
            + +MM     A +I+ NP H+A+A++Y    + AP ++AKG + +A K+R+IA  H+I 
Sbjct: 252 AQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSAAPFVIAKGVDDVAFKIREIARAHDIA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I   P LAR+++    ++  IP   + AVAQ++  ++  +
Sbjct: 312 IVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLR 351


>gi|259907600|ref|YP_002647956.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|224963222|emb|CAX54706.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae Ep1/96]
 gi|283477442|emb|CAY73358.1| Flagellar biosynthetic protein FlhB [Erwinia pyrifoliae DSM 12163]
          Length = 381

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  ++ + KTEAP+  +I  A  EG  P S+E +    +L     +L      + S+ S
Sbjct: 1   MS-QESDNEKTEAPTPSRIAKAREEGQIPRSKELTTLLMLLVGWGLMLCSGGNLVRSLQS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  +    +  + D + ++   + L   A + ++P +   ++  + +  +    +L+ 
Sbjct: 60  LLHNAMI-FDRLLILDPAQMLQRSSSLLGQAFKAIMPFVFGLLLTAVSAPPLIGGLILSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K+++   GIKR++S       +K+ +K++L      + L  N    +  I   
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   L+ +++ +  +   D+ +  +  + KL+MS+QEIKDE K+  G+P
Sbjct: 179 LGMALTDISGLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R+  + +MM     A +I+ NPTHY++AL+Y      AP +VAKG  L+A
Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  H +P+ E P LAR+L++   I + IP   Y AVA+++  +Y  +
Sbjct: 299 LRIRELAENHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351


>gi|26991041|ref|NP_746466.1| flagellar biosynthesis protein FlhB [Pseudomonas putida KT2440]
 gi|24986073|gb|AAN69930.1|AE016632_1 flagellar biosynthetic protein FlhB [Pseudomonas putida KT2440]
          Length = 380

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +  LA    LL F      ++ +
Sbjct: 1   MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +  S T+  + D   +   L      A   V P L+L  +    + +     + + 
Sbjct: 61  -LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVVSFVAPIALSGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S+  L   +K+  K  ++  +  + L+ +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +   D+ +  +Q + K+KM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+I  EHNI I E P+LAR+++    +   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIR 353


>gi|84624133|ref|YP_451505.1| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|161898983|ref|YP_201256.2| flagellar biosynthesis protein FlhB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|6969591|gb|AAF33828.1|AF226282_2 flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae]
 gi|84368073|dbj|BAE69231.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 376

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDGAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S      E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  AWMKTALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|288553046|ref|YP_003424981.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4]
 gi|288544206|gb|ADC48089.1| flagellar biosynthesis protein FlhB [Bacillus pseudofirmus OF4]
          Length = 363

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 177/346 (51%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + KK +D+  +G    S + +    +L   ++L FF    I S   DL   + 
Sbjct: 13  DEKTEKATPKKRQDSRKKGQVAKSTDVNTAIILLLVFLFLWFFGGAIIGSTLMDLMKHVF 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                          +   + + A+ +++P +L+ M+ G+ +  IQ  P+   + +K   
Sbjct: 73  QTYLLMDVTPRSFEAMFKEIVMEAAVVLLPIMLVAMVAGVAASYIQVGPLFTTDPLKMKL 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++   +G KRI+S+  +V  +KS +KI   G ++ + L  N   +L           Y 
Sbjct: 133 SKIDPIKGFKRIFSVRAIVELLKSLLKIAFAGVVVFVILWFNLEDVLLLSQKAVADGFYV 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + + + + +  L++ D  +  +    ++KMSK++IKDE K   G+P IK+++K
Sbjct: 193 IAQLTALMGVAVAVLLLFLSIPDYLYQKYDHEKQIKMSKKDIKDEHKNMEGDPRIKSKRK 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
                    +MM+    A ++ITNPTHYA+AL+Y + + DAP++VAKG + +A+K++ IA
Sbjct: 253 QKQMEMAMQRMMQEVPNADVVITNPTHYAIALKYDEEKADAPIIVAKGVDYVAQKIKGIA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++ + E   LAR+L+    I   +P   +KAVA+++  +Y  K
Sbjct: 313 SEHDVVLVENKPLARALYANADIGEQVPEDMFKAVAEVLAYVYRLK 358


>gi|313497812|gb|ADR59178.1| FlhB [Pseudomonas putida BIRD-1]
          Length = 380

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +  LA    LL F      ++ +
Sbjct: 1   MAESESGQDKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +  S T+  + D   +   L      A   V P L+L  +    + +     + + 
Sbjct: 61  -LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S+  L   +K+  K  ++  +  + L+ +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +   D+ +  +Q + K+KM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+I  EHNI I E P+LAR+++    +   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIGVEHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIR 353


>gi|238025868|ref|YP_002910099.1| flagellar biosynthesis protein FlhB [Burkholderia glumae BGR1]
 gi|124695889|gb|ABN14283.1| FlhB [Burkholderia glumae BGR1]
 gi|237875062|gb|ACR27395.1| FlhB [Burkholderia glumae BGR1]
          Length = 408

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  + ++ E A  EG    SRE + F+ + A          P    + +
Sbjct: 1   MAE-DSDLEKTEDATPRRREKAREEGQVARSREFASFALLAAGFYGAWLLSGPIGEHLRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +  +    D   ++       +     + P L L  +  + + +     +L+ 
Sbjct: 60  MLRGSL-TFDRASAFDTHQMLTGAGRAGMEGLSAIAPVLALTGLAALAAPIALGGWLLST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F R+    G+ RI+S   ++    +  K ++VG I  I++  ++  ML  ++  
Sbjct: 119 KAIGFKFDRLDPISGLGRIFSPQGVIQLGMALAKTVIVGGIGGIAIWRSHDEMLGLLNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L      V     M +  +  +  +D+ +   Q+  KL+M+K+E+K E ++S G+P
Sbjct: 179 LHEALAGTLHLVAVCCGMTVAGMLVVAGMDVPYQIWQYNKKLRMTKEEVKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +++TNPTH+A+ALRY   E  AP ++AKG NL+A
Sbjct: 239 HVKGRIRQQQRAMARRRMMANVPKADVVVTNPTHFAVALRYTDGEMRAPKVIAKGVNLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH +PI E P LAR+L+  V +   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELAEEHRVPILEAPPLARALYHNVDLEREIPGSLYSAVAEVLAWVYQLK 351


>gi|52080241|ref|YP_079032.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC
           14580]
 gi|52785618|ref|YP_091447.1| flagellar biosynthesis protein FlhB [Bacillus licheniformis ATCC
           14580]
 gi|319645980|ref|ZP_08000210.1| FlhB protein [Bacillus sp. BT1B_CT2]
 gi|52003452|gb|AAU23394.1| flagella-associated protein [Bacillus licheniformis ATCC 14580]
 gi|52348120|gb|AAU40754.1| FlhB [Bacillus licheniformis ATCC 14580]
 gi|317391730|gb|EFV72527.1| FlhB protein [Bacillus sp. BT1B_CT2]
          Length = 359

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 105/346 (30%), Positives = 185/346 (53%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK  ++  +G    S + +   ++L   +  LF        +   +     
Sbjct: 12  GEKTEKATPKKRRESRKKGQVAKSADVNTAVTLLIVFLSFLFIGPFMRDRLLGLIEKYYK 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                K+  +++I  L   + L +  ++ P LL  ++ G+ S  +Q   +     +KP  
Sbjct: 72  ELITMKVS-VANIPGLFQSVVLESGLIMAPLLLTAVVSGVLSNYMQVGFLFAPEAIKPDL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K++    G KRIYSI  +V  +KS +KI++VG +    L  N+  +L   + +    L +
Sbjct: 131 KKLDPLNGFKRIYSIRAIVELLKSILKIVIVGGVTFAVLWLNFDKILRIPALSAGEALSY 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
             +    + +   + +  L VLD  +    +   ++MSKQ+IKDE K++ G+P+IK++ K
Sbjct: 191 VGWLTFLMGVSAAVALIFLAVLDYLYQKFDYEKNIRMSKQDIKDEYKKTEGDPLIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +     +MM+   +A +IITNPTHYA+AL+Y + + DAP ++AKG +L+A K+R+IA
Sbjct: 251 QKQKEMAMRRMMQEVPKADVIITNPTHYAVALKYDENKMDAPFIIAKGVDLMALKIRQIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LAR+L+ QV I+ A+P  F+KAVA+++  +Y  K
Sbjct: 311 KEHDVMTVENRPLARALYDQVEIDQAVPEEFFKAVAEILAYVYKTK 356


>gi|325981881|ref|YP_004294283.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212]
 gi|325531400|gb|ADZ26121.1| flagellar biosynthetic protein FlhB [Nitrosomonas sp. AL212]
          Length = 379

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 189/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   +TE  + +++E A  EG    S+E + F+ ++A  + +L   S  +  +  
Sbjct: 1   MSE-ESDLERTEEATPRRLEKAREEGQVVRSQELTSFTLLMAAAVGILMLGSALMEKLVK 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +    +        ++      ++     + P L L ++    + ++    +++ 
Sbjct: 60  IMQSGM-QLDRELAFQSELMINRFYEFAIEGLISMAPLLFLLLVVAFFAPMLLSGWLVSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P FKR+   +G  RI+S+ +L+  +K+ +K IL+G +  + +  N  +++  ++ +
Sbjct: 119 KAVIPDFKRIDPIKGFGRIFSMRSLIELVKAILKTILIGGVAALVIWHNKDSVMALLTVS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +    ++I+  +  +  +D+ +   +   +L+M+K++++ E K+S G+P
Sbjct: 179 IDLGISRTGDFLAMSFLLIISAMIIIVAVDVPFQIWEHAKQLRMTKEDVRKEYKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +++ R   R +MM    +A +I+TNPTHYA+ALRY Q+   AP +VAKG +L+A
Sbjct: 239 YVKARIRNLQREAARRRMMSEIPKADVIVTNPTHYAVALRY-QSNMRAPKVVAKGVHLLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA EH IPI E P LAR+L+    + S IP   Y AVA+++  ++  +
Sbjct: 298 ARIREIATEHRIPILEAPPLARALYHHTELESEIPEKLYTAVAEVLAYVFQLR 350


>gi|167464149|ref|ZP_02329238.1| flagellar biosynthesis protein FlhB [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 363

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 179/347 (51%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK E+A  +G    S E      +    + LL F       +   +   L
Sbjct: 14  SGEKTEKATPKKREEAKKKGQVAKSMEIPASLILFFTFLGLLLFSGFMKDRLLGLVTYTL 73

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                  +  ++++  +  HL   A  L+ P  ++ ++    +   Q   +     +K  
Sbjct: 74  EHDLVMNV-TLNNVQMMFLHLIGEAFLLLAPIFIISVVIAFFANYAQIGFLFTGEPLKMK 132

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F +++  EG KRI+S+  +++F+KS +K+I++  I+ +++      ++         +L 
Sbjct: 133 FNKINPIEGAKRIFSLRAIIDFLKSTIKMIVIAAIVWMTIWGEKDKLISLGHVPLQDMLP 192

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
           +      ++ + I   +  +  LD  +   ++   L+MSKQEIKDE K+S G+P+IK + 
Sbjct: 193 YIGSLTVQLGLKIGGVLIAIAALDYMYQKFEYEKSLRMSKQEIKDEFKKSEGDPLIKGKI 252

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R     +MM+   +A +IITNPTH+A+ALRY   E +AP ++AKG +LIA K++++
Sbjct: 253 RERQRRMAMQRMMQEVPKADVIITNPTHFAVALRYDAAEMEAPAVIAKGTDLIALKIKEV 312

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E+ + I E   LAR+L+ QV I  AIP   ++AVA+++  +Y  K
Sbjct: 313 AKENGVTIMENKPLARALYAQVEIGQAIPADLFQAVAEVLAYVYKAK 359


>gi|149908444|ref|ZP_01897107.1| flagellar biosynthesis protein [Moritella sp. PE36]
 gi|149808607|gb|EDM68542.1| flagellar biosynthesis protein [Moritella sp. PE36]
          Length = 376

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 99/356 (27%), Positives = 182/356 (51%), Gaps = 8/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    +TE  + KK+  A  +G    S+E +    + A     L F      ++  
Sbjct: 1   MAEKD-GQEQTEDATEKKLTQAREKGQVVRSKELATTFVLTATGAAFLAFGD----ALAR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM---FGIGSYLIQRIPV 117
            L + + S  Q + EDI     LL  +S+S   L  P   + ++    GI   ++    V
Sbjct: 56  ALVINMTSLFQLEREDIFSPDALLEIVSVSIKPLFWPMFGIMIVGFFAGIIGNILMGGMV 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   ++P   ++S + G+KR+     +V  +KS  K+ +V TI  + L   +  +++F 
Sbjct: 116 FSGESIRPKASKMSPKAGLKRMMGPQAMVELIKSIAKVAVVVTIALLVLKVQFLQIMEFS 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
               +  +  +   +  V I +   +  +  +D+ + Y +   +L+M+KQE+KDE+K   
Sbjct: 176 LQPLNISIIQSLNFLTDVFIWLCASLIIIVAIDVPYQYWKHAKELRMTKQEVKDEMKDVN 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K + + +     + +MM     A +IITNPTHY++AL+Y ++ N AP +VAKG +
Sbjct: 236 GNPQLKGKIRQMQMEISQRRMMGDVPDADVIITNPTHYSVALKYEKSGNAAPKVVAKGVD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A ++R++A EH +PI E  +L R+++    I+  IP   + AVAQ++  +Y  +
Sbjct: 296 QVAFRIREMAKEHKVPILESAALTRAIYHSTEIDDPIPEGLFIAVAQILAYVYQLE 351


>gi|90418395|ref|ZP_01226307.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338067|gb|EAS51718.1| flagellar biosynthetic protein FlhB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 362

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 126/352 (35%), Positives = 207/352 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+++   +KTE P+ KKI DA+ +GN P+SREA + +S+LA + ++      G+  +  
Sbjct: 1   MSDSEDKSSKTEFPTEKKISDAVEKGNLPVSREAPILASLLAIMAFIALQAREGVQRLLL 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +  Q  L+  +  + +L  L+  A   ++P   LF+  G+ S ++Q  P +N+
Sbjct: 61  SLQTTFENPLQWDLDTSADALHVLHMLAREAVWFILPAAGLFVAGGVISSVLQNPPQINI 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P +  VS   G  RI+ +  L  F K+  K I +G ++++ L  ++ TM+  + A+
Sbjct: 121 ERIRPKWSNVSPASGFTRIFGLRGLTEFGKAVFKFITIGVVVSMLLVSSFPTMMQAMFAD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         K+L  I +    L   D+  +   W   L MSKQEIKDE KQ+ G+P
Sbjct: 181 PVLVPELILQMAMKLLSGISIATIVLVAADLAMTRFHWRRDLMMSKQEIKDENKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK RQ+ I R R+R +MM     AT++I NPTHYA+ALRY + E  AP++VAKG +L+A
Sbjct: 241 QIKARQRQIGRDRVRRRMMADVPLATLVIANPTHYAIALRYNREEGGAPMVVAKGADLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA  +++P+ E+  LARS++  V I+  IPP F+KA+A++IY ++ +
Sbjct: 301 LKIREIAEANDVPVIEDKLLARSMYDHVEIDQMIPPKFFKAIAEIIYFLHSR 352


>gi|300113616|ref|YP_003760191.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113]
 gi|299539553|gb|ADJ27870.1| flagellar biosynthetic protein FlhB [Nitrosococcus watsonii C-113]
          Length = 377

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ +   +TE P++K+ EDA  +G  P SRE S    +L+  + L+      +  +  
Sbjct: 1   MADS-SAQERTEQPTAKRQEDARKKGQVPRSRELSTTVLLLSSALGLVLVGESLLQGLAD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    + ++ +   ++         A +++ P L L ++  + + L+     ++ 
Sbjct: 60  LMRQGL-QLERAQIFEPKAVILQFQWGVGEAVKIITPFLALTLIAALAAPLLMGGWSVSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   +++++  +G+KRI+     +  +K+ +K +L+  +  +        ++      
Sbjct: 119 QSLGFKWEKLNPAKGMKRIFGPQGGMELLKALIKFLLLSGVACLLFWLFSSDLMALGRQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++     +   L+ +   +A + V+D  +       +LKM++QE+K+E K++ GNP
Sbjct: 179 FVPAVFQLAHLMGWSLVGLSASLALIAVIDAPFQSWNHIRQLKMTRQEVKEEHKETDGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     +MM A  +A +++ NPTHYA+AL Y Q +  AP +VAKG + +A
Sbjct: 239 ELKGRIRRVQREIASRRMMAAVPQADVVVVNPTHYAVALNYEQDKQGAPRVVAKGVDQVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R +A  +N+P+   P+L+R+++    ++  IP   Y+AVAQ++  +   +
Sbjct: 299 LKIRTVAAGNNVPVLSAPALSRAIYHSTELDQEIPAGLYRAVAQVLAYVLQLR 351


>gi|167034909|ref|YP_001670140.1| flagellar biosynthesis protein FlhB [Pseudomonas putida GB-1]
 gi|166861397|gb|ABY99804.1| flagellar biosynthetic protein FlhB [Pseudomonas putida GB-1]
          Length = 380

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 102/354 (28%), Positives = 185/354 (52%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +  LA    LL F      ++ S
Sbjct: 1   MAESESGQDKTEDPTEKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +  S T+  + D   +   L      A   V P L+L  +    + +     + + 
Sbjct: 61  -MMRMNFSLTREVIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S+N+L   +K+  K  ++  +  + L+ +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNSLTELLKALAKFFVILIVAVVVLSNDRQALLSIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +   D+ +  +Q + K+KM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A  +A +IITNPTHYA+AL+Y   +   AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFM 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+I  EH I I E P+LAR+++    +   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIGVEHKIQILESPALARAIYYSTEVEQEIPAGLYLAVAQVLAYVFQIR 353


>gi|157959922|ref|YP_001499956.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
           700345]
 gi|157844922|gb|ABV85421.1| flagellar biosynthetic protein FlhB [Shewanella pealeana ATCC
           700345]
          Length = 376

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +KTE  + KK++ A  +G  P S++ +  + ++ C + L       I +  +
Sbjct: 1   MS-KDTGQSKTEDATPKKLKQAREQGQVPRSKDFTSAALVMGCALLLTTSAGE-IGARVA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L       T+ +L++   +   L    L    ++ P  +L  +  + +  +    + N 
Sbjct: 59  QLARTNMQFTKAQLDEPGMMTRHLGQALLEILYILAPLFILVALIAMIAGAMPGGWIFNF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    G+ R+ SI +L   +KS +KI+L+G I+ + L +N  T+L F    
Sbjct: 119 GNAGFKYSRIDPIAGLGRMVSIKSLAELIKSVLKIVLLGGIMLVFLDKNLQTLLTFSQLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   +  + L +  +  +D+ + Y Q +++LKMS QE+KDE KQ  G P
Sbjct: 179 IDEAITRVIDMLSLGVFYLGLGLLFIACIDLPYQYWQHHNELKMSLQEVKDEHKQQEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + +   R +   +   A +++ NPTHYA+AL+Y   + DAP ++ KG + +A
Sbjct: 239 EIKAKIRQMQQRISRSRADVSIPNADVLLVNPTHYAVALKYDANKADAPYVLTKGTDELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A  H + I E P L R+++    I   IP   + A+A ++  +   +
Sbjct: 299 LYMREVAKRHGVEILELPPLTRAIYYSTNIEQQIPASLFVAIAHVLTYVMQIR 351


>gi|295399827|ref|ZP_06809808.1| flagellar biosynthetic protein FlhB [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978230|gb|EFG53827.1| flagellar biosynthetic protein FlhB [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 360

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S + +    +L   + L F  +     +   +H    
Sbjct: 13  GEKTEKATPRKRQEVRQKGQVAKSADINTALVMLVVFLVLSFSGTRHKELLLRLMHQSFE 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L  I  +  +   L  + + +V P  L  +     +  +Q   +     +K ++
Sbjct: 73  QYALMDL-TIGAVHHIFLALLKNVATIVAPIFLAAVAAACLANFLQVGFLFTTEPLKINW 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R+   +G+KRI S+  LV  +KS +KI +VG +    L      +L   + +  + L  
Sbjct: 132 SRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLEATLSS 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 LASLTVKMGLYASFALLFLAIFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A ++ITNPTHYA+AL+Y   + DAP++VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYVALKIKQLA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357


>gi|188579884|ref|YP_001923329.1| flagellar biosynthesis protein FlhB [Methylobacterium populi BJ001]
 gi|179343382|gb|ACB78794.1| flagellar biosynthetic protein FlhB [Methylobacterium populi BJ001]
          Length = 354

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 119/350 (34%), Positives = 205/350 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTEA + +++ +A+ +G+ P SREA +F+S L  LI L  F       +  
Sbjct: 1   MAEETDHESKTEAATERRVREAIEKGDIPFSREAPVFASTLGLLIALALFARGQASQLAR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D   LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L
Sbjct: 61  DFAPLLDDPRGFALETGGDAMLLLSRVALAAGRFLLPILLILAVCSLTASLLQNLPRFVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + RVS   G+ RI+  +  V F+KS VK + V  +  + L       ++ +  +
Sbjct: 121 DRIQPKWSRVSPMAGLSRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         +++  + +    +   D+ W+  +W   L+MS+Q+IKDE KQ+ G+P
Sbjct: 181 PSQLPELILTVSIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSRQDIKDEHKQTEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+LIA
Sbjct: 241 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVLAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++
Sbjct: 301 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 350


>gi|95929867|ref|ZP_01312608.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM
           684]
 gi|95134163|gb|EAT15821.1| flagellar biosynthetic protein FlhB [Desulfuromonas acetoxidans DSM
           684]
          Length = 353

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 183/353 (51%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   +TE  +SK+ ED   +G    S+E +  + + +  + L +F+    +S  S
Sbjct: 1   MAE-ESGQERTEEATSKRREDFRKKGQVAQSKEVNTAALL-SLSLLLWYFYGGSFWSQLS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L       +         +V +L  +    + L+ P  L+ ++ G  +  +Q   +   
Sbjct: 59  WLVSHFWEQSGSLAVTPQSVVQILLFVLQKTAVLLSPLFLMVLVVGFFASFLQIGWLFTG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++   +G  R  S  +LV  +KS  K+ LVG +   ++   +   L  +  +
Sbjct: 119 KPLMPDLTKLDPIKGAGRFVSKRSLVELVKSLAKVALVGYVAYKTVYSEFDNALYLVDMD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               LY+       VL+     +  L +LD  +   +   K+KM+KQE K+E K+S G+P
Sbjct: 179 VIETLYYVGRVAMAVLMKSCGIMILLALLDFMFVRWEMEEKMKMTKQEQKEEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +SI +   R +MM    +A ++ITNPTH ++A++Y Q E DAPV++AKG + +A
Sbjct: 239 HLKAKVRSIQQQMARRRMMAEVPKADVVITNPTHLSVAIKYEQGEMDAPVIIAKGADNLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA E+++P+ E   +AR+L+K V +   +P   ++AVA+++  +Y  K
Sbjct: 299 MKIREIARENSVPLVENVDVARALYK-VEVGEVVPEQMFQAVAEILAYVYSLK 350


>gi|170722841|ref|YP_001750529.1| flagellar biosynthesis protein FlhB [Pseudomonas putida W619]
 gi|169760844|gb|ACA74160.1| flagellar biosynthetic protein FlhB [Pseudomonas putida W619]
          Length = 380

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 182/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +  LA    LL F      ++  
Sbjct: 1   MAESESGQDKTEDPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLL- 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  L  S T+  + D   +   L      A   V P L+L  +    + +     + + 
Sbjct: 60  EMMRLNFSLTREVIVDEGAMGAFLLASGKMAIWAVQPVLILLFVVAFIAPIALGGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S+N L   +K+  K I++  +  + L  +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLAGIKRMFSMNALTELLKAVAKFIVILVVALVVLANDRQALLAIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +   D+ +   Q + KLKM+KQE+KDE K S G P
Sbjct: 180 LDQAIIHSVQVVGWSALWMSAGLLLIAAADVPFQLWQTHKKLKMTKQEVKDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+I  EH + I E P+LAR+++    I   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353


>gi|212639548|ref|YP_002316068.1| flagellar biosynthesis protein FlhB [Anoxybacillus flavithermus
           WK1]
 gi|212561028|gb|ACJ34083.1| Flagellar biosynthesis pathway, component FlhB [Anoxybacillus
           flavithermus WK1]
          Length = 360

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 172/346 (49%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S + +    +L   + L F       ++T        
Sbjct: 13  GEKTEKATPRKRQEVRKKGQVAKSADVTAAFLMLIVFLVLSFSSGMWGDAITRLFRQSFQ 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 +  I  +  +   L    + LV P  L  +   + +  +Q   +     ++   
Sbjct: 73  HYFFMDV-TIDSVQLIFVDLLQQLALLVGPIFLAAIAAALFANFVQVGFLFTTEPLQMKL 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++   +G KRI+S+  LV  +KS +K++ +  +    L  +   +L     +  +I   
Sbjct: 132 SKLDPIQGFKRIFSLRALVELLKSILKVLFISVVTFSILWMHIDDILSLSHKSIGAIAAT 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 ++ ++  + +  L++ D  +  + +   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 LGRLTIQMGLVASVALLFLSLFDYLYQRYDFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTH+A+AL+Y + + DAP++VAKG + +A+K++ IA
Sbjct: 252 QKQREMAMRRMMQEVPEADVVITNPTHFAVALKYDEQQADAPIVVAKGADYMAQKIKDIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++++ I E   LAR+L+ Q  I   IP  F+KAVA+++  +Y  K
Sbjct: 312 KKNDVMIVENRPLARALYDQTDIGMVIPEAFFKAVAEILAYVYKTK 357


>gi|312111661|ref|YP_003989977.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1]
 gi|311216762|gb|ADP75366.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y4.1MC1]
          Length = 360

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S + +    +L   + L F  +     +   +H    
Sbjct: 13  GEKTEKATPRKRQEVRQKGQVAKSADINTALVMLVVFLVLSFSGTRHKELLLRLMHQSFE 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L  I  +  +   L  + + +V P  L  +     +  +Q   +     +K ++
Sbjct: 73  QYALMDL-TIDAVHHIFLALLKNVATIVAPIFLAAVAAACLANFLQVGFLFTTEPLKINW 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R+   +G+KRI S+  LV  +KS +KI +VG +    L      +L   + +  + L  
Sbjct: 132 SRLDPIQGVKRIISLRALVELLKSLLKISVVGLVTFALLWVQLDHILSLTTKSLEATLSS 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 LASLTVKMGLYASFALLFLAIFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A ++ITNPTHYA+AL+Y   + DAP++VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPKADVVITNPTHYAVALKYEDGKMDAPIVVAKGVDYVALKIKQLA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            EH++   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KEHDVVTVENRPLAQALYRQTEVGDMIPEEFFKAVAEILAYVYRLK 357


>gi|269836606|ref|YP_003318834.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM
           20745]
 gi|269785869|gb|ACZ38012.1| flagellar biosynthetic protein FlhB [Sphaerobacter thermophilus DSM
           20745]
          Length = 361

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 186/353 (52%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      +TE  + K+ +DA  +G+ P S E S  + +L  L +L ++      ++T 
Sbjct: 1   MAE-----ERTERATPKRRQDARRQGDVPRSAELSAAAGLLGALAFLQWYGGQAAGALTG 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                    +   L  ++ I  L     +  +R+V P + + ++ GI + + Q  PV  L
Sbjct: 56  YFRGTFGGLSPSDLTPLA-IQNLAWESGMVFARVVGPLVAVVLVVGIAAGVAQTGPVFAL 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP FKR++   G+KRI+S        K+ VK++++  +    L            A+
Sbjct: 115 AALKPDFKRINPAAGLKRIFSRRGAFETFKALVKLVIIAALTYPVLRAEVAHFASLTGAH 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SI      T+ KV +        L + D  +   ++  +L+M++QE+++E++Q  GNP
Sbjct: 175 PVSIAEAVGRTLVKVGLRAAGAFFILALADYAFQRWEYERRLRMTRQELREELRQIEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+R + + R   R +MM A  +AT+++TNPTH A+A+RY      APV+VAKG  L A
Sbjct: 235 ELKSRIRQLQRQLARGRMMHAVPKATVVVTNPTHLAVAIRYEMRTMPAPVVVAKGSGLTA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++IA EH +P+ E   LA++L++   + + IP   Y+AVA +I  +Y  +
Sbjct: 295 ERIKQIAREHAVPVVENKPLAQALYRMADVGAEIPVALYEAVADVIAYVYRLR 347


>gi|70729046|ref|YP_258780.1| flagellar biosynthesis protein FlhB [Pseudomonas fluorescens Pf-5]
 gi|68343345|gb|AAY90951.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens Pf-5]
          Length = 378

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+ +D+  +G    S+E +  + +LA    LL +       +  
Sbjct: 1   MAESESGQDKTEEPTEKRKKDSREKGEIARSKELNTLAIMLAGAGGLLVYGGGLALDLL- 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  L  S  +  L     +   L H    A   V P LL  ++  +   +     +   
Sbjct: 60  EIMRLNFSLPREVLLSPGAMGLYLLHSGKIAILAVQPVLLTLLLAAVIGPISLGGWLFAG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S   L+  +K+  K  LV  +    L+ +   +L      
Sbjct: 120 KSLAPKFSRMNPANGLKRMFSPTALIELLKALAKFALVLFVALSVLSADIDDLLRIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +  +D+    +Q + KL M+KQE++DE K   G P
Sbjct: 180 LEKAIIHSIQVVGWSTLWMACGLILIAAVDVPVQLYQAHKKLLMTKQEVRDEHKDQEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM A   A ++ITNPTHYA+AL+Y   +  APVL+AKG + +A
Sbjct: 240 EVKQRIRQLQREMSQRRMMAAIPEADVVITNPTHYAVALKYDAEKGGAPVLLAKGSDFLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA  H + + E P+LARS+F    +   IP   Y AVAQ++  +Y  +
Sbjct: 300 LQIREIAVAHEVMLLESPALARSIFYSTELEEEIPAGLYLAVAQVLAYVYQIR 352


>gi|78047537|ref|YP_363712.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925983|ref|ZP_08187349.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118]
 gi|78035967|emb|CAJ23658.1| flagellar biosynthesis pathway component FlhB [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543579|gb|EGD14996.1| flagellar biosynthetic protein FlhB [Xanthomonas perforans 91-118]
          Length = 376

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMVLARGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E    +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKLRETPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   +  +++    +   ++  
Sbjct: 120 KAIMPDLSKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISKGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|294664739|ref|ZP_06730068.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605493|gb|EFF48815.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 376

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMVLARGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++     +   ++  
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|167645349|ref|YP_001683012.1| flagellar biosynthesis protein FlhB [Caulobacter sp. K31]
 gi|167347779|gb|ABZ70514.1| flagellar biosynthetic protein FlhB [Caulobacter sp. K31]
          Length = 360

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 193/353 (54%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++    +KTE P++KK+ DA  +G+ P S + S  +S+      ++         + +
Sbjct: 1   MADDQDEASKTEEPTAKKLSDARAKGDVPKSADISQLASLSGAFGVVVIAGGWLTRDLVN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    A A    +E    +  +     ++A   ++  +++  + G  + + Q   +L+ 
Sbjct: 61  QLTPFFAHAGTMDVE--GGVNAIAKTAVMAALPALVLVMVVSGLLGAAANVAQSGFILSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP  +++ + +G+KR++ ++  V F KS VK ++ G I    +  +   + + +  +
Sbjct: 119 DKIKPDLQKLDIIKGLKRVFGMDGFVQFAKSAVKFLVTGLIAWYVVKPDAAQIPNLVGMD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +I+  +     K+  M+L+F+      D  W   ++  +++MS Q+IKDE KQS G+P
Sbjct: 179 VGAIIPLSMKLCTKLFWMVLIFLMATAGFDWFWQRLRFNKRMRMSLQDIKDEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K +QK +   R R +MM A  +AT++I NPTHYA+AL+Y Q EN AP+ VAKG + +A
Sbjct: 239 HVKGKQKQLRMQRSRQRMMAAVPKATVVIMNPTHYAVALKYEQGENAAPICVAKGVDDLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A E  + I E+P LAR+L+  + ++  IP   ++AVA++I  +   K
Sbjct: 299 LRIRAVAEEAGVYILEDPPLARALYAAMDVDEQIPAEHFEAVAKVIGFVMSNK 351


>gi|329888173|ref|ZP_08266771.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC
           11568]
 gi|328846729|gb|EGF96291.1| flagellar biosynthetic protein FlhB [Brevundimonas diminuta ATCC
           11568]
          Length = 358

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 103/355 (29%), Positives = 190/355 (53%), Gaps = 2/355 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++   P++KTE  + +K+E+A  +G+   S + +   S+      LL         +  
Sbjct: 1   MADGPDPESKTEDATPRKLEEARKKGDVAKSPDVAAALSLAGAAGVLLAGGGWFSTRIAE 60

Query: 61  DLHVLLASA-TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L   LA         +    V +  H   +A+  +   +   ++ G+G  L Q   +  
Sbjct: 61  ALTPFLAQPHAMIGGLEAGGGVEIGMHAVWAAAPFLAALMFAVILGGVGGNLAQSGLIFT 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + VKP + +V+  EG KRI+  + LV F+K+F+K++ +G +    L  +   + +  + 
Sbjct: 121 ADKVKPKWSKVNPLEGFKRIFGPDGLVQFLKTFIKLVAIGAVCWWVLKPHARELENLAAM 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P  IL  A      +++  L+F++     D  W   ++  +++M+K+E+K++ KQS G+
Sbjct: 181 SPAMILPFARDLALALMLSALVFLSLTAGADYLWQRMRFAKRMRMTKEELKEDFKQSDGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNL 298
           P +K + + I   R R +MM+A   AT+IITNPTHY++ALRY   + + APV VAKG + 
Sbjct: 241 PHVKAKLRQIRMQRGRQRMMQAVPDATVIITNPTHYSVALRYEPDKGDGAPVCVAKGVDA 300

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A ++R++A EH +PI E   LAR+L+  V ++  IP   ++A A++I  +  ++
Sbjct: 301 LALRIREVAREHKVPIVENVPLARALYAAVEVDGVIPREHFEAAAKVIGFVMQQR 355


>gi|292489168|ref|YP_003532055.1| flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|292900286|ref|YP_003539655.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291200134|emb|CBJ47260.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291554602|emb|CBA22250.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora CFBP1430]
 gi|312173327|emb|CBX81582.1| Flagellar biosynthetic protein FlhB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 381

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  ++ + KTEAP+  +I  A  EG  P SRE +    +L     +L      + S+  
Sbjct: 1   MS-QESDNEKTEAPTPSRIARAREEGQIPRSRELTTLLMLLVGWGLMLCSGGNLVRSLQG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH  L    +  + D + ++     L   A   ++P +   ++  + +  +    +L+ 
Sbjct: 60  LLHNGLI-FDRLLILDPAQMLQRSASLLGQAFMAIMPFVFGLLLTAVSAPPLIGGLILSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K+++   GIKR++S       +K+ +K++L      + L  N    +  I   
Sbjct: 119 KSLAPKLKKLNPLSGIKRMFSAQMASEMVKAILKVLLATLGGGLYLLLNKEKFIRLIFEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   L+ +++ +  +   D+ +  +  + KL+MS+QEIKDE K+  G+P
Sbjct: 179 LGMALTDISSLLLGCLLAVIMSLIPMVAFDVIYQLYSHWKKLRMSRQEIKDEFKKQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R+  + +MM     A +I+ NPTHY++AL+Y      AP +VAKG  L+A
Sbjct: 239 QIKGRVRQMQRAMAQRRMMTDVPDADVIVNNPTHYSVALKYQDGSLGAPKVVAKGSGLVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  H +P+ E P LAR+L++   I + IP   Y AVA+++  +Y  +
Sbjct: 299 LRIRELAESHKVPMLEAPPLARALYRHCEIGAPIPADLYHAVAEVLAWVYSLR 351


>gi|21242681|ref|NP_642263.1| flagellar biosynthesis protein FlhB [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108153|gb|AAM36799.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 376

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMVLARGIGDGAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S   +  E+   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPKMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLMMSGLRFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++     +   ++  
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELIKSVLRLLFVGLAASFCISRGLHGLRSLVNQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAIGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWLRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIREAGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|310659024|ref|YP_003936745.1| flagellar export pore protein [Clostridium sticklandii DSM 519]
 gi|308825802|emb|CBH21840.1| flagellar export pore protein [Clostridium sticklandii]
          Length = 363

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 105/346 (30%), Positives = 185/346 (53%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  S KK +D+  +G    SRE +  ++++A ++ L +       ++T   +    
Sbjct: 15  EEKTEKASPKKKQDSRKKGQVMQSREINTAAALMASVLALKYSGGFMFRTITEATYFFRD 74

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L +      +L ++ +  ++ V+  + +  +    +  IQ   +     +K   
Sbjct: 75  LLYTDILNESIGGYKILIYMIMYVTKAVVIVIGVGFVAAFITSKIQVGNLFTTETLKIKP 134

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++  EG KR++S+ + V  +KS +KI +VG +    L +N   +L      P    Y 
Sbjct: 135 ERLNPIEGFKRMFSMRSFVELVKSLLKIGVVGFVGYSYLAKNIGLVLKSQQLKPIQFSYM 194

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
            F     + I +   I  + +LD  +  + +   LKMSKQEIK+E KQS G+P IK++ K
Sbjct: 195 IFELSINLAIRMTFAITVIAILDFFYQRYDYEKNLKMSKQEIKEEYKQSEGDPQIKSKIK 254

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTH+A+A++Y + + +AP +VAKG+NLIA+ +++ A
Sbjct: 255 EKQRQAAMRRMMQEIPKADVIITNPTHFAVAIKYDEDKFEAPYVVAKGKNLIAQNIKQKA 314

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E NIP+ E   LA++L+K+V I   I P  Y+AVA+++  +Y  K
Sbjct: 315 REVNIPVVENKPLAQALYKEVEIGQMISPQLYEAVAEILAYVYSLK 360


>gi|163850079|ref|YP_001638122.1| flagellar biosynthesis protein FlhB [Methylobacterium extorquens
           PA1]
 gi|163661684|gb|ABY29051.1| flagellar biosynthetic protein FlhB [Methylobacterium extorquens
           PA1]
          Length = 353

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 204/350 (58%), Gaps = 1/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D  ++KTEA + +++ DA+ +G+ P SREA +F+S L  LI L  F       +  
Sbjct: 1   MADDD-KESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D   LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L
Sbjct: 60  DFAPLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P + RVS   G  RI+  +  V F+KS VK + V  +  + L       ++ +  +
Sbjct: 120 DRITPKWSRVSPMAGFTRIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         +++  + +    +   D+ W+  +W   L+MS Q+IKDE KQ+ G+P
Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+LIA
Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++
Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349


>gi|312126838|ref|YP_003991712.1| flagellar biosynthetic protein flhb [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776857|gb|ADQ06343.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 366

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 102/344 (29%), Positives = 186/344 (54%), Gaps = 1/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  I  +        ++ 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLIIEPLQQGSKYFFSN- 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               LED+     LL+ +  ++ ++V+P  L  M         Q   ++    +K SF++
Sbjct: 75  LNYNLEDVRDASRLLSFIITTSLKMVLPFCLTIMFVATIVEWAQSSFLITAQSLKMSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG KRI+SIN++V  +KS +K++++G             +L+    N  +I+  +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYEMNVLTIVKFSF 194

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK++ +  
Sbjct: 195 DSAINLILWMAVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSKIRER 254

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIALKIKQEAIK 314

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           H I I E   LA++L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 315 HRIEIVENRELAKALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 358


>gi|331006676|ref|ZP_08329954.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
 gi|330419508|gb|EGG93896.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
          Length = 377

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 181/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+D+   KTE  + KK E A  +G  P S+E    S +LA  I L + F   + +   
Sbjct: 1   MSESDSSQEKTEEATPKKAEKAKEDGQVPRSKELITTSVLLAGTIGL-YLFGGILANSMV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+  L  + ++  + D +++   L      A   +IP   + ++  I   +     + + 
Sbjct: 60  DIAKLNFAISREAIFDPAYMFSNLGQSFYDAFLALIPIFAVLLIAAIVGPIGLGGWLFSA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+KR++S+  L+   K+  K++L+  +  + L      ++     +
Sbjct: 120 KSMMPKMSRMNPGAGLKRMFSVTALIELAKALAKVVLIILLSLLLLKSLEGELMSLAYQD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            ++ + H+        I + L    + ++D+     +   KLKM+ QE+KDE+K + G P
Sbjct: 180 INASIMHSLEISMWSAIALSLVTIFIAIVDVPIQIWESAKKLKMTMQEVKDEMKDTDGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + +     +MM     A ++ITNPTHY++A++Y     + P++VAKG +L+A
Sbjct: 240 EVKGRIRQLQQEIANRQMMGEVPEADVVITNPTHYSIAVKYKPEMMETPIVVAKGVDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EH++ I E P LAR+++    I+  IP   Y AVA+++  ++  +
Sbjct: 300 FRIREVAKEHSVDIVESPILARAIYNTTKIDEPIPKGLYIAVAKVLAYVFQLR 352


>gi|146341890|ref|YP_001206938.1| flagellar biosynthesis protein FlhB [Bradyrhizobium sp. ORS278]
 gi|146194696|emb|CAL78721.1| Flagellar biosynthetic protein FlhB [Bradyrhizobium sp. ORS278]
          Length = 359

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE P+ K+++ AL  G+   S+E + +  I A  + +  F      +V  
Sbjct: 1   MAEEGDTEDKTEDPTQKRLDQALERGDVVKSQELNTWFVIAAATLVMTTFSGSIGTAVLV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L+A++      D + ++ L   LS +    +   +L+ M+  I   ++Q   V + 
Sbjct: 61  PMRNLIANSWMIH-TDGAGLLALARSLSFAVIAAIGVPILMVMLAAIAGNMMQHRLVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KPS  ++S   G KR++      NF K   K++L+GT++ + L      +   +  +
Sbjct: 120 EPLKPSLSKISPLSGAKRLFGKQAAANFAKGLFKLVLLGTVMVMILWPERLRLEALLHMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L         ++  ++  +A + + D  + Y QWY + KMS QE+K+E KQS G+P
Sbjct: 180 VAELLGVTMSLTTHLMGSVVALLALVAIGDYLFQYRQWYERQKMSLQEMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I + R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HVKGRIRQIRQQRMKKRMMAAVPKASVIITNPTHYSVALSYERG-MQAPVCVAKGVDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IPI E   LAR+L+  V I+  IP   Y AVA++I  +   +
Sbjct: 299 FKIREIAKAHDIPIVENVPLARALYATVEIDEEIPVEHYHAVAEIIGYVMGLR 351


>gi|82702438|ref|YP_412004.1| flagellar biosynthesis protein FlhB [Nitrosospira multiformis ATCC
           25196]
 gi|82410503|gb|ABB74612.1| flagellar biosynthetic protein FlhB [Nitrosospira multiformis ATCC
           25196]
          Length = 392

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   +TE  S +++E +  EG AP S E S F+ ++A    L          +  
Sbjct: 1   MSE-ESDQERTEPASPRRLEKSREEGQAPRSTELSTFALLIAAGTGLWLMGGHLSSQLAR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +    +    + + +   L   S  A     P L+L ++  + + ++    + + 
Sbjct: 60  LMKEGM-HIPRETGFEPARLAERLFDQSFHALITFAPFLILMILVALVAPMLLSGWLFSW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P FKR++   G+ R++S+++L+   K+ +K  L+G     ++     ++L  I+  
Sbjct: 119 KSLNPDFKRINPLSGLSRMFSLHSLLELAKALLKAALIGGAGVWTIWHYKESVLSLIARP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L H    V      I   +  +  +D+ +     Y KL+M+K+E++ E K++ GNP
Sbjct: 179 LVPGLTHMGELVALSFFSIAGTMILIATVDVPFKLWDHYRKLRMTKEEVRQENKETEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R ++  R   R +MM    RA +IITNPTHY++ALRY   +  AP +VAKG +L+A
Sbjct: 239 QIKGRIRAQQREMARKRMMTEIPRADVIITNPTHYSVALRYEDGKMRAPRVVAKGMHLLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+I ++H +P+ E P LAR+L++   +   IP   Y  VA+++  +Y  +
Sbjct: 299 LKIREIGHQHKVPVLEAPPLARALYQHTELGDEIPQTLYNVVAEVLAYVYQLR 351


>gi|37525818|ref|NP_929162.1| flagellar biosynthesis protein FlhB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785247|emb|CAE14188.1| Flagellar biosynthetic protein FlhB [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 383

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  EG    SRE S    +L   + LL+     +    S
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKARKEGQIVRSRELSSIL-MLTSGLSLLWMSGQSMTHELS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S     + +   +V  +  L   A   ++P     ++  + +  +    V + 
Sbjct: 59  LMVFEGFSFDHSMVSNDKQMVQQIGRLLQQAVLALLPVFAGLVLVALSAPALLGGLVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+++   G+KRI+S+N L    K+ +K   VG    + L  N+  ML  I+  
Sbjct: 119 KSIKFDPKKLNPISGLKRIFSMNALAELFKALLKAGFVGIGAALFLWMNWPAMLRLIAQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L  A   +     +++  +  +   D+ +  +    KL+M++QEIKDE K+  G+P
Sbjct: 179 PLLALDDAMQMLIFAGYVVVFMLIPMVAFDVVYQIYSHLKKLRMTRQEIKDEFKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y +    AP ++AKG  +IA
Sbjct: 239 HVKARIRQQQRAAARQRMMADVPKADVIVTNPTHYAVALKYDEKAMSAPKILAKGAGIIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++++I  E+ IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIKEIGTENRIPLLEVPPLARALYRHGEIGGQIPATLYAAVAEVLAWVYQLK 351


>gi|319790410|ref|YP_004152043.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans
           HB-1]
 gi|317114912|gb|ADU97402.1| flagellar biosynthetic protein FlhB [Thermovibrio ammonificans
           HB-1]
          Length = 347

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 184/353 (52%), Gaps = 9/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ +   KTE  + ++ + A  EG    S++ S+  S++   + L F+     ++   
Sbjct: 1   MAKDPS---KTEKATPRRRQKAREEGQVLRSQDLSIAFSLVLVAVTLFFYLP---FAFRE 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +   +  +    +++  VF+   +    + L  P  L+ ++ G+ S ++Q   +  L
Sbjct: 55  LLKLFNYTFEELPFLELNQFVFVSLEI---LALLTFPVFLVLLVGGVLSNVVQFGFLFTL 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P    ++  +G +R++S+  L   +KS VK+     +   ++         + S  
Sbjct: 112 KPLVPKLDPINPVKGFQRLFSLKTLFELVKSLVKLGFASAVGYFAVKYLTRYFTSYASFP 171

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               LY+   ++  +++   L    +  LD  +   ++   LKMSKQE+K+E KQ  G+P
Sbjct: 172 LEVQLYYLAKSLVVLVVAFALLAVPVAGLDFLYRRWEYEENLKMSKQEVKEERKQYEGHP 231

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+  +   R     +MM    +A ++ITNP HYA+AL+Y + +  AP +VAKG + +A
Sbjct: 232 LIKSEIRKRQRQLAMRRMMAEVPKADVVITNPEHYAVALKYERGKMYAPKVVAKGVDSVA 291

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA EH +P+ E P LAR+L++   +   IP  FY+AVA+++ KIY ++
Sbjct: 292 LKIKEIALEHGVPVEENPPLARALYESCEVGDFIPEEFYRAVARILAKIYRRR 344


>gi|149928479|ref|ZP_01916714.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105]
 gi|149822813|gb|EDM82064.1| Flagellar biosynthetic protein FlhB [Limnobacter sp. MED105]
          Length = 376

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 176/352 (50%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      K    S +KI  A  EGN P SRE      +LA  + LL+     + S + 
Sbjct: 1   MAEETD-QEKDLPASEQKIRKAREEGNLPRSRELGGGVVLLAG-VGLLYTMGGELVSQSE 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L        + +  D  H+      +   +  ++IP  L+ ++  I S +       + 
Sbjct: 59  KLMRQGLVLDRAQAFDTKHMGLKWVSMLQESLFILIPLFLVVVVAAIVSNIAVGGFNWST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++  +G+K I+S+N L   +K+ +K +++G +  + L ++        +  
Sbjct: 119 KPLEPKLSKLNPVKGLKNIFSVNGLAELVKAILKTVVLGGVGYLLLMQDLGEFTQLSAMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +        K  +++ +    +  +D+ +   ++Y  L+M+ +E+K E K+S G+P
Sbjct: 179 LEHGMAETARITIKDALILAIAFLLIVSIDVPYQLWRYYKGLRMNLEELKRESKESDGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + KS+ R   R +MM +   A +I+TNPTHY++AL+Y +    AP +VAKG   +A
Sbjct: 239 HLKGKIKSMQREAARRRMMASVPNADVIVTNPTHYSVALKYDKDGKGAPRVVAKGIGPLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R++A E+ +P+ E P LAR+L+  V +   IP   Y AVA+L+  +Y  
Sbjct: 299 LKIREVAQENKVPLVEAPPLARALYSNVELEQEIPGALYTAVAKLLAYVYAL 350


>gi|329849682|ref|ZP_08264528.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum
           C19]
 gi|328841593|gb|EGF91163.1| flagellar biosynthetic protein FlhB [Asticcacaulis biprosthecum
           C19]
          Length = 358

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 186/354 (52%), Gaps = 1/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE  S+KK+  A  +G+   S +     S++     +  +       +  
Sbjct: 1   MAEEPDSEDKTEEASAKKLSQAREKGDVAKSADLPQALSLIGACAVIALYGPSLSSDLVD 60

Query: 61  DLHVLLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           DL   LA   Q     +    V ++  +  +   +VI  + + ++ GIG +++Q   +  
Sbjct: 61  DLIPFLAHPQQLLGSLEGDGGVTIMREMVFAFLPIVIIVMGVTLLLGIGGHVMQTGLMFT 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KPS  +++   G KR++  + L+ F K+ VK+I+ G I+   L    + ++    A
Sbjct: 121 TEKLKPSLTKLNPMSGFKRLFGFDALIQFAKTVVKLIITGAIVWQVLKGKLYEIMALAKA 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P  IL +A      + I + +F+      D  W   ++  ++KMSKQE K+E KQ  G+
Sbjct: 181 SPLLILPYAMDVFVALAIAVCIFLFIEGAADYMWQRFRFMQRMKMSKQEQKEEYKQMEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK + + I   + R +MM     AT++ITNPTHYA+AL++   +  AP+ VAKG + +
Sbjct: 241 PHIKAKLRQIRMEKSRRRMMSNVKDATVVITNPTHYAVALQFEMGQMQAPLCVAKGVDTL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+ A +HN+PI E+  LAR+L+  + ++  IP   + AVAQ+I  +  KK
Sbjct: 301 ALKIREEAGKHNVPIVEDVPLARALYAAIDVDETIPEEHFAAVAQVISFVLAKK 354


>gi|289670566|ref|ZP_06491641.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 376

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDRAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S       +   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPTMRANPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSS 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|258622507|ref|ZP_05717529.1| flagellar biosynthetic protein [Vibrio mimicus VM573]
 gi|262173373|ref|ZP_06041050.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
 gi|258585207|gb|EEW09934.1| flagellar biosynthetic protein [Vibrio mimicus VM573]
 gi|261890731|gb|EEY36718.1| flagellar biosynthesis protein FlhB [Vibrio mimicus MB-451]
          Length = 375

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+ +  +KTE  S++KI+ A   G  P ++E +  +  LA ++ L +     I+   +
Sbjct: 1   MNEH-SSQDKTEQASAQKIKKARQGGQVPRAKEFTTAAIFLA-VVLLFYAQLDHIWQSMA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T++ L +   +V  L         +++P   + ++  +GS ++    +   
Sbjct: 59  GIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++ P   +++   GIKR++S  +LV  +KS +K++++  ++   L  +   +L      
Sbjct: 119 ANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYLDNHLQPLLGMQRLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    V+DI +   ++  +L+MSKQE+K+E KQ+ G P
Sbjct: 179 LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQELKEEFKQNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK+R + I +   R K+ +    A +++TNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   +
Sbjct: 299 IHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVLQLR 351


>gi|218528682|ref|YP_002419498.1| flagellar biosynthesis protein FlhB [Methylobacterium
           chloromethanicum CM4]
 gi|240137212|ref|YP_002961681.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
 gi|218520985|gb|ACK81570.1| flagellar biosynthetic protein FlhB [Methylobacterium
           chloromethanicum CM4]
 gi|240007178|gb|ACS38404.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
           AM1]
          Length = 353

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 204/350 (58%), Gaps = 1/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D  ++KTEA + +++ DA+ +G+ P SREA +F+S L  LI L  F       +  
Sbjct: 1   MADDD-KESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D   LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L
Sbjct: 60  DFAPLLDDPRGFSLESGGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P + RVS   G  RI+  +  V F+KS VK + V  +  + L       ++ +  +
Sbjct: 120 DRITPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         +++  + +    +   D+ W+  +W   L+MS Q+IKDE KQ+ G+P
Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+LIA
Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++
Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349


>gi|239628943|ref|ZP_04671974.1| flagellar export protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519089|gb|EEQ58955.1| flagellar export protein [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 167/345 (48%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + K+ +D   +GN   S + +   S+L     L         +    +++ + 
Sbjct: 4   DEKTEKATPKRRQDERKKGNVFQSNDVAAVCSMLVLFHSLKALAPHMYRNFRDAMYMFMG 63

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A             +L    L      +P L + ++  +     Q     +++ +K   
Sbjct: 64  MAADSDSFHQEAGREMLVKAMLLFLESALPLLFIGVLTAVAVTFFQTRMAFSMDVLKFKM 123

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R+S  +G KR++SI ++V  +K+ +KI ++G ++ + L      +   +       L  
Sbjct: 124 ERISPLKGFKRMFSIRSVVELIKALIKITILGWVVYVFLKGRMEELSRLMEGTVEGALIF 183

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
              TV  ++  + +    L  +D  + + ++   L+MSKQEIK+E KQ+ G+P IK + +
Sbjct: 184 TGNTVISLVDTVGVAFIFLASMDYLYQWWEYEKNLRMSKQEIKEEYKQTEGDPQIKGKIR 243

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +I+ NPTHYA+AL Y    N APV++AKG + +A K+ ++ 
Sbjct: 244 EKQRQMASMRMMQNVPKADVIVRNPTHYAVALGYDADRNRAPVVLAKGADHLALKIVEVG 303

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             + + I E+  LAR L+  V ++  IP  +Y+ VA+++  +Y  
Sbjct: 304 EANGVYILEDRPLARGLYASVEVDMEIPEEYYQTVAKILAFVYKL 348


>gi|289666118|ref|ZP_06487699.1| flagellar biosynthesis protein FlhB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 376

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 177/353 (50%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++    +TE P+ K++ +A  +GN P SRE S  + +    ++ L   + GI    +
Sbjct: 1   MSESEDGGERTELPTEKRLREAREQGNIPQSRELSTAA-VFGAGVFALMALARGIGDRAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S       +   +      L L    +++P + + +  G+   L+      + 
Sbjct: 60  VWMKTALSPDPTMRANPIALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSS 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   GIKR++  N+L   +KS ++++ VG   +  ++++   +   +S  
Sbjct: 120 KAIMPDLTKLNPANGIKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRALVSQP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +     + +L      +  L  +D  +    W  KLKM+++EIK E+K+S G+P
Sbjct: 180 LEQAVGNGLDFTKSLLFYTAGALVLLAAVDAPYQKWNWMRKLKMTREEIKREMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   +  AP++VAKG + +A
Sbjct: 240 EVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+   +H + I   P LAR+L+++  I   IP   Y  VAQ++  +Y  +
Sbjct: 300 FRIRETGEQHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQLR 352


>gi|158422263|ref|YP_001523555.1| flagellar biosynthesis protein FlhB [Azorhizobium caulinodans ORS
           571]
 gi|158329152|dbj|BAF86637.1| flagellar biosynthetic protein [Azorhizobium caulinodans ORS 571]
          Length = 359

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/352 (34%), Positives = 207/352 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++   ++KTE  + +K+ DAL +GN P SRE +LF+S+L  L  L FF    +  +T 
Sbjct: 1   MSDDTDKESKTEEATERKVSDALEKGNVPYSRETALFASLLGILGVLTFFVVNPVRILTV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L   L +     L      + L   + L   ++++P +LL    G+ + L Q  P L L
Sbjct: 61  ELTHFLDNPAGFTLAGSDDAIALAWGVLLLMGQVLLPAVLLLAAAGLAASLFQNTPRLVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N ++P F R+   +G  RI+S +  + F KS  K+++V  I  + L      +++ + ++
Sbjct: 121 NRIQPQFSRIDPMKGWTRIFSRDGGIEFGKSAFKLVVVAVICGVLLMSERDKVMNAMYSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         +++  + +    L  LD+ WS   W ++L+M+KQE+K+E+KQ  G+P
Sbjct: 181 PLLMPSVILSLATRLISAVCVATIVLVALDLVWSRFHWRAELRMTKQEVKEEMKQQEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R +S+A+ R R +MM +  +AT+++ NPTHYA+AL Y + +  AP +VAKG +LIA
Sbjct: 241 MVKARMRSLAQQRARQRMMSSVPKATLVVANPTHYAIALYYDRQKGGAPQVVAKGTDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA   +IP+ E+  LAR+++  V ++  IPP FYK VA+++Y IY +
Sbjct: 301 LKIREIAERCSIPVIEDKPLARAMYDAVEVDQWIPPEFYKPVAKILYFIYSR 352


>gi|325273555|ref|ZP_08139785.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51]
 gi|324101315|gb|EGB98931.1| flagellar biosynthesis protein FlhB [Pseudomonas sp. TJI-51]
          Length = 380

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 102/354 (28%), Positives = 183/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  D+  +G    S+E +  +  LA    LL F      ++ +
Sbjct: 1   MAESESGQDKTEDPTEKRKRDSREKGEVARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +  S T+  + D   +   L      A   V P L+L  +    + +     + + 
Sbjct: 61  -LMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVISFVAPIALSGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S++ L   +K+  K  ++  +  + L  +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMHALTELLKALAKFFVILVVAVVVLINDRQALLSIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +   D+ +  +Q + KLKM+KQE++DE K S G P
Sbjct: 180 LEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLYQTHKKLKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A  +A +IITNPTHYA+AL+Y   +   AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+I  EH + I E P+LAR+++    I   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353


>gi|307546924|ref|YP_003899403.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
 gi|307218948|emb|CBV44218.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
          Length = 388

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 176/354 (49%), Gaps = 2/354 (0%)

Query: 1   MSENDA-PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+++ +  + KTE  + +++E A  EG    SRE + F  +LA ++ L          + 
Sbjct: 1   MADDSSSDEEKTEDATPRRLEKAREEGQVARSRELATFMLLLAGVLGLASLGGTLYDQIG 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             +        ++ +E    +   L  L       ++P  LL  +  + +  +    +++
Sbjct: 61  GVMEQAFLFDRRQAMETSPMLAEALM-LGRHTLISLLPLFLLLTVVALVAPALLGGWLIS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP   +++  +G+KRI+    LV   K+  K +LVG++    L  +    +  +S 
Sbjct: 120 AKSLKPQASKLNPLKGLKRIFGTQALVELAKAIAKSVLVGSVGMAYLYLHRGEFMALMSQ 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
             H  L  A     +   +++L +  + ++D+ +       +L+M+K E+K E K+S G+
Sbjct: 180 PIHQALARAMGMAAEACGLMVLTLLVVILIDVPYQLWSHAKQLRMTKDEVKREHKESEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R +   ++  R +MM     A +IITNPTHYA+AL Y QT   AP +VAKG + +
Sbjct: 240 PQVKGRIRQQQQAMARGRMMSQVPEADVIITNPTHYAVALVYEQTGMAAPRVVAKGADAV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R++  E  +P+ E   LARSL+  V + + IP   Y AVA+++   +  K
Sbjct: 300 AARIRELGEEAGVPLLEAAPLARSLYHHVDLEAEIPAALYTAVAEVLAWAFGLK 353


>gi|172057870|ref|YP_001814330.1| flagellar biosynthesis protein FlhB [Exiguobacterium sibiricum
           255-15]
 gi|171990391|gb|ACB61313.1| flagellar biosynthetic protein FlhB [Exiguobacterium sibiricum
           255-15]
          Length = 363

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 98/346 (28%), Positives = 169/346 (48%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  S +K +D+  +G    S + +    +    + L FF           L   L+
Sbjct: 15  GEKTEKASPRKRDDSRKKGQVAKSADLTSSLMLFGMFLILFFFGPFLGKRFVMVLENGLS 74

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           + T     +   I  ++  + +    LV P  +  ++ GI    +Q   +L+   ++P  
Sbjct: 75  AQTVLVAVEEGRIQEVMIEMLVQMGILVAPFFVTAVVIGILGNFVQIGALLSTESIQPKL 134

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++  +GIKRI S+  L+ F+KS  K++++G      L  N   +    S      L  
Sbjct: 135 DRINPLQGIKRIVSMKALIEFLKSVFKLLVIGATSGTVLWNNKVEISRLTSEPIGDALAI 194

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + I + + +  L VLD  +    +   ++MSKQ++KDE K + G+P IK + K
Sbjct: 195 IGHLTFLLGISVSIALIVLAVLDFAYQKFDFEKSIRMSKQDLKDEHKNTEGDPQIKGKIK 254

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+A++Y   ++ AP++VAKG + +A ++R+ A
Sbjct: 255 QQQREMAMRRMMQEIPNADVVITNPTHYAVAIQYDDGKHAAPIVVAKGVDAVAFRIREKA 314

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
               IPI E   LAR+LF +  I  A+   FY+A+A+ +  +Y  K
Sbjct: 315 TAAEIPIIENRPLARALFAKSEIGMAVDESFYQALAETLAFVYQMK 360


>gi|120597286|ref|YP_961860.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
 gi|146294569|ref|YP_001184993.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
 gi|120557379|gb|ABM23306.1| flagellar biosynthetic protein FlhB [Shewanella sp. W3-18-1]
 gi|145566259|gb|ABP77194.1| flagellar biosynthetic protein FlhB [Shewanella putrefaciens CN-32]
          Length = 376

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 172/353 (48%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+     +KTE  + +K+  A  EG  P S++ +  + +L C + L    +    +  S
Sbjct: 1   MSQTQ-QQDKTEEATPQKLRKARKEGQVPRSKDLASAALVLGCSVMLTSN-ANWFATKVS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L       T+ +L+    +V  L    +    ++ P  ++  +    +  +   P+ N+
Sbjct: 59  GLTKYNMLLTRAELDQPDMMVRHLGTSLVEMLTILSPLFIMVALLAAIAGALPGGPIFNV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    G+ RI+S  +LV  +KS +KI+L+ +I+ + L  +  ++L +    
Sbjct: 119 GNANFKYSRIDPIAGVGRIFSTQSLVELLKSCLKIVLLISIMLVFLNGHLQSLLSYSHRP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + + ++ + + +  +  +D+ + Y     +L+MS+QE+KDE  Q  G P
Sbjct: 179 IDEAVRDGINLLSQGMLYLGVGLLVIAFIDVPYQYWHHKKQLRMSRQEVKDEHTQQEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + +   R +      +A +++ NPTHYA+AL+Y     DAP ++ KG   +A
Sbjct: 239 EIKAKIRQLQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVLTKGTEELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A +H + I + P L R+++    ++  IP   + A+A ++  +   K
Sbjct: 299 LYMRELAKKHGVEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351


>gi|254559224|ref|YP_003066319.1| flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
 gi|254266502|emb|CAX22266.1| Flagellar biosynthetic protein flhB [Methylobacterium extorquens
           DM4]
          Length = 353

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 204/350 (58%), Gaps = 1/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D  ++KTEA + +++ DA+ +G+ P SREA +F+S L  LI L  F       +  
Sbjct: 1   MADDD-KESKTEAATERRVRDAIEKGDIPFSREAPVFASTLGLLIALALFARGQAAQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D   LL       LE     + LL+ ++L+A R ++P LL+  +  + + L+Q +P   L
Sbjct: 60  DFAPLLDDPRGFSLESSGDAMLLLSRVALAAGRFLLPILLILAVCSLSASLLQNLPRFVL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P + RVS   G  RI+  +  V F+KS VK + V  +  + L       ++ +  +
Sbjct: 120 DRITPKWSRVSPMAGFARIFGTSGQVEFLKSLVKFLSVSVVALLLLRSERTRAVNAMFVD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         +++  + +    +   D+ W+  +W   L+MS Q+IKDE KQ+ G+P
Sbjct: 180 PSQLPELILTVAIRLVSAVAIATIVIVAGDLVWARLRWQRSLRMSHQDIKDEHKQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+A+ R R++M+    RAT++I NPTH+A+ALRY  +EN AP+++AKGQ+LIA
Sbjct: 240 SVKARLRSLAQDRARNRMLANVDRATVVIANPTHFAVALRYEPSENPAPLVIAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R IA E  I + E+  LARSL+  V ++  IP  FY+AVAQ+++ ++
Sbjct: 300 LRIRAIAEEKGIAVIEDKPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 349


>gi|39995534|ref|NP_951485.1| flagellar biosynthesis protein FlhB [Geobacter sulfurreducens PCA]
 gi|39982297|gb|AAR33758.1| flagellar biosynthetic protein FlhB [Geobacter sulfurreducens PCA]
 gi|298504535|gb|ADI83258.1| flagellar biogenesis protein FlhB [Geobacter sulfurreducens KN400]
          Length = 352

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 188/350 (53%), Gaps = 2/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D   +KTE P++KK+++A  +G  P SR+ +   +++A ++ L         ++     
Sbjct: 2   SDDKHSKTEKPTAKKLDEAKKKG-VPHSRDLTSTVTLIAAMVALYTTGGFMFTTLKRTSG 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            LL S     L + S +  LL  L L    +V+P +L+ ++ G+ + ++Q    +N   +
Sbjct: 61  ELLGSMGTFHLTEAS-VEHLLIKLFLVFLSVVMPFMLVVVISGLATTMVQVGFSMNSERI 119

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
                +++     +++++ ++LV  +K+ +KI++VG +    + +    +L     +   
Sbjct: 120 TFKLDKLNPVTNAQKLFNKDSLVEMLKAVLKIVIVGYMSYKIMRDEMDGLLFLADTDLAG 179

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL        K++I     +  L VLD+ +   ++   LKM+KQE+KDE K+S G+P +K
Sbjct: 180 ILEVFKHLAFKLVIHTCGVLLILGVLDLAFVKWRFIDNLKMTKQEVKDEHKESEGDPKVK 239

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            + + +   + + ++ +    A +++TNPTHYA+AL+Y +    AP+++AKG + +A+ +
Sbjct: 240 GKIRQMQFQQAQKRLRKVIPTADVVVTNPTHYAVALKYERETMAAPLVLAKGVDHMAQTI 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + IA E+N+ + E   LAR L+ QV     IP   Y AVA+++  +Y  K
Sbjct: 300 KAIARENNVMLVENRFLARELYAQVKEGQPIPESLYTAVAEVLAYVYSLK 349


>gi|315179661|gb|ADT86575.1| flagellar biosynthetic protein FlhB [Vibrio furnissii NCTC 11218]
          Length = 376

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+  +  +KTE  S +K++ A  +G  P ++E +     LA  +Y      P I+   +
Sbjct: 1   MSDQASSQDKTEKASPQKVKKAREQGQIPRAKEFTTAVIFLAVAVYFYAQL-PAIWQSIA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T+  L++   ++  L H       L++P  L+ ++  + S +I    +   
Sbjct: 60  GVFRYNLSLTRADLDNPMQMIEQLGHSLGMVIELLLPMFLVIIVVTLASSMILGGWLFRP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++ P   +++   GI RI+S  +LV  +KS +K+ ++  ++   L  +   ML      
Sbjct: 120 ANLLPKLSKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLGMQGLP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +         + + L+++   +    V+DI +   +   +LKM+KQE+K+E K + G P
Sbjct: 180 LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I +   R ++ +   +A ++I NPTHYA+AL+Y    +DAP +VAKG +  A
Sbjct: 240 EIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAKGVDETA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             ++++A ++ + I   P L RS++    I  A+P   Y AVA ++  +   K
Sbjct: 300 LHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHILTYVLQLK 352


>gi|158320532|ref|YP_001513039.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii
           OhILAs]
 gi|158140731|gb|ABW19043.1| flagellar biosynthetic protein FlhB [Alkaliphilus oremlandii
           OhILAs]
          Length = 362

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 104/346 (30%), Positives = 182/346 (52%), Gaps = 1/346 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE  + KKI+DA  +GN   S+E +    +LA  I +  F +    S+ +    + 
Sbjct: 11  SEEKTEQATPKKIKDAREKGNVLQSKEVNSALILLAIFIIINAFATFIGVSLLNMTRAVY 70

Query: 67  ASATQRKL-EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                  +   + ++  L   L +     V P  L  ++ G+ S   Q   +L    +  
Sbjct: 71  TEFLSANIAFSVKNLQILSIKLMIYFFIAVGPIALTSLVVGLISSYAQVGVLLTSKPLMF 130

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++  EG K+++S+ ++V  +K+F+++ ++G I    +      +L+    +  SIL
Sbjct: 131 DLNKINPIEGFKKMFSMRSVVELLKAFIRLGVIGYISYDYVKGQVGVILETTGMDISSIL 190

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    + I   + +  L VLD  +  +++   LKMSKQEIK+E KQ+ GNP IK++
Sbjct: 191 KAIMSMTVDIGIKAGIALIALAVLDYYYQRYEYNKNLKMSKQEIKEEYKQTEGNPQIKSK 250

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+    A +IITNPTH+A+ ++Y   E DAP ++AKGQ+LIA+ ++K
Sbjct: 251 IKEKQRQMAMRRMMQDVPSADVIITNPTHFAIGIKYDLNEFDAPKVIAKGQDLIAQNIKK 310

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA E+N+ + E   LAR+L+  V +   +PP  Y+AVA+++  +Y 
Sbjct: 311 IALENNVTVVENKPLARALYDSVEVGQFVPPDLYQAVAEVLAYVYR 356


>gi|77918767|ref|YP_356582.1| flagellar biosynthesis protein FlhB [Pelobacter carbinolicus DSM
           2380]
 gi|77544850|gb|ABA88412.1| flagellar biosynthetic protein FlhB [Pelobacter carbinolicus DSM
           2380]
          Length = 351

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 184/353 (52%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D    +TE  + K+  D   +G    S+E    + +   L+   F+      +++ 
Sbjct: 1   MADSD--QERTEQATGKRRADFRQKGQVAQSKEVHTAALMTGTLLLWTFYAPLFWRTLSD 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH L + A   ++  +S ++ LL  L    + L+ P +L  ++ GI S  +Q   +   
Sbjct: 59  MLHHLWSLAGDFEVTPVSAVM-LLGQLGQKIALLLAPIMLTTLVIGILSSYLQVGWLFTT 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +++   G+ ++ S  + +  +KS +K+ LVG +    +   +   LD +  +
Sbjct: 118 KPLAPDFSKMNPVPGLAKLISKRSFIEVVKSLLKVFLVGVVAYKVILAEFGQALDLVDMD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +  + +      ++L+     +  L +LD  +   +   K+KM+KQE K+E K+S G+P
Sbjct: 178 INDSVVYLARVAARILLRTCGVMILLALLDFLFVRWEMEQKMKMTKQEQKEEHKESEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +S+     R +MM    +A ++ITNPTH ++AL Y ++   AP +VAKG + +A
Sbjct: 238 QIKARIRSMQMQAARRRMMAEVPKADVVITNPTHLSVALAYDRSRMSAPQIVAKGADAVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA EH +P+ E   +AR LFK V +   +P   ++AVA+++  +Y  K
Sbjct: 298 MRIREIAREHKVPLVENKPVARVLFK-VDLGKDVPEEMFQAVAEILAYVYGLK 349


>gi|149908781|ref|ZP_01897441.1| flagellar biosynthetic protein [Moritella sp. PE36]
 gi|149808055|gb|EDM67996.1| flagellar biosynthetic protein [Moritella sp. PE36]
          Length = 375

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 181/352 (51%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ +   KTE P+ KK +DA  EG    S+E +    IL     L  +F+P   +  S
Sbjct: 1   MSDS-STQEKTEEPTQKKRDDAKKEGQIARSKELATAGLILISGSSLT-WFAPSFSAFFS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L  +    T+    D  ++V +L    ++  +++IP +L+  +      ++    +  L
Sbjct: 59  ELFTIQMQLTREVTRDPQYMVVMLGEAIINMLKVLIPFILVLNLTTFLLGIMPGGLIFVL 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +++P   +++   G+KR+ S + ++  +KS +KI L+   +   L+ ++  +       
Sbjct: 119 KNIQPKISKMNPISGLKRMVSKDTIIELIKSILKISLISFTLYKVLSLHWHELAAMAQMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L +A + +   L  +   +  +  +D+ +       KLKMSKQEIKDE K + G+P
Sbjct: 179 LLNVLNNAMYIMSITLSFMGAALLIVAAIDLPYQKWSMNKKLKMSKQEIKDEHKGAEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + K I R   + ++  A   A  +I NPTHYA+A++Y    + AP +VAKG + +A
Sbjct: 239 EIKQKIKQIQRQMSQKRIDSAVPTADFVIVNPTHYAVAVKYDAARSQAPFIVAKGVDTMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            +++KIA  H++ I E P L R+++    ++  IP   Y AVA ++  I   
Sbjct: 299 LRIKKIAESHDLDIIEAPELTRAIYHSTQVDQEIPAQLYTAVAYILTHIMQL 350


>gi|266621912|ref|ZP_06114847.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
 gi|288866385|gb|EFC98683.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
          Length = 355

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 164/348 (47%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D KTE  + K+ +D   +GN   S +     S+L     L         ++ + + + 
Sbjct: 4   AADEKTEKATPKRRQDERKKGNVFQSSDVIAVCSLLVLFNSLNALAPMIYRTLKASMELF 63

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            + A   +      +   L        +  +P L + +   + +   Q     + + +K 
Sbjct: 64  FSYAASTEPLTAEDLPDKLLKAMFLFGQAALPLLFIGVAVAVVTTFFQTRLSFSADVMKF 123

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R+SL +G KR++SI ++V  +K+ +KI ++  +I   +          +     +  
Sbjct: 124 KMDRISLLKGFKRMFSIRSVVELLKAMIKITILAWVIYSYIKGRIHEFARLMDGTVQAAF 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   T   ++  +      L   D  + + ++   L+MSKQEIKDE KQ+ G+P IK R
Sbjct: 184 VYVGDTAVSLVNTVGAAFIFLAAFDYLYQWWEYEKNLRMSKQEIKDEYKQTEGDPQIKGR 243

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R     +MM+   +A +II NPTH+A+AL Y    N APV++AKG + +A K+ +
Sbjct: 244 IREKQRQMASMRMMQNVPKADVIIRNPTHFAVALGYDSNTNRAPVVLAKGADHLALKIVE 303

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +   + + I E+  LAR L+  V ++  IP  FY+ VA+++  +Y  K
Sbjct: 304 VGEANGVYIMEDKPLARGLYASVEVDMEIPEEFYQTVAKVLAFVYKLK 351


>gi|319649548|ref|ZP_08003704.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2]
 gi|317398710|gb|EFV79392.1| flagellar biosynthesis protein B [Bacillus sp. 2_A_57_CT2]
          Length = 361

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 100/347 (28%), Positives = 181/347 (52%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK +D+  +G    S++ +    +LA  ++LLF  S     +        
Sbjct: 13  SGEKTEKATPKKRQDSRKKGQVAKSQDVNTAIVLLAVFLFLLFAGSYLKNIILYIFTHSF 72

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                  L + ++I  +   +       + P +L+ M+ GI +  +Q   + +   ++P 
Sbjct: 73  NDYMLMPLTE-ANIQVIFLDVLKELVLFLGPIMLVAMLAGITANFMQVGTLFSTEAIQPK 131

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +++   +G KRI+S+  +V  +KS +KI  VG      L      +L     +  + + 
Sbjct: 132 LEKMDPIKGFKRIFSMRAIVELLKSMLKIAFVGVAAFAVLWLRIDEILILSQKSVGTAMA 191

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  ++ ++    +  L+VLD  +  + +   ++MSKQ+IKDE K   G+P+IK++ 
Sbjct: 192 TLASLTVQMGLIASAALLFLSVLDYLYQKYDFEKNIRMSKQDIKDEYKNIEGDPLIKSKI 251

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   R     +MM+   +A ++ITNPTH+A+AL Y +T++DAP++VAKG + +A+K++ I
Sbjct: 252 KQRQREMAMRRMMQEVPKADVVITNPTHFAIALSYDETKSDAPIVVAKGVDFVAQKIKLI 311

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EH++   E   LAR+L+ Q  I  AIP  F+KAVA+++  +Y  K
Sbjct: 312 AKEHDVIAVENRPLARALYSQAEIGQAIPEEFFKAVAEILAYVYRTK 358


>gi|302874605|ref|YP_003843238.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
           743B]
 gi|307690784|ref|ZP_07633230.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           cellulovorans 743B]
 gi|302577462|gb|ADL51474.1| flagellar biosynthetic protein FlhB [Clostridium cellulovorans
           743B]
          Length = 607

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 103/346 (29%), Positives = 194/346 (56%), Gaps = 2/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D K+E  +SKK+ DA  +G    S++  L  + LA    L    +  I  +++ +    +
Sbjct: 262 DEKSEEATSKKLADAKKKGQIARSKDLGLGITFLATAFGLAALGNMFIDRMSNIIMKFFS 321

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                  ED   ++ +L    +  + L++P   + M+ G+ + L Q   +     +KP  
Sbjct: 322 VTNGNLTED--GLIEILKIAMIDGAILILPIAFIVMVTGVAASLAQTGFMNTSEPLKPDL 379

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+++  +G KRI+S+ ++V+ +K+   II+VG +    ++++   ++  I+    +ILY 
Sbjct: 380 KKINPVDGFKRIFSMRSVVDLLKNVTIIIIVGYVGYKLVSDDIVDIMLLINLKEGAILYE 439

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  +L+ I L ++ + + D  +   ++  +++M+KQE+K+E KQ  G+P IK ++K
Sbjct: 440 LKKIVTSILLKIALILSVIGIADYMYQKKKFLKEMRMTKQEVKEEYKQMEGDPEIKAKRK 499

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +   R +MM A   AT+++TNPTH+A+AL+Y +    AP++VAKG + IA K+++IA
Sbjct: 500 QKMKELSRARMMAAVPNATVVVTNPTHFAVALKYEEGSAGAPMVVAKGTDNIAFKIKEIA 559

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E+ +PI E   LAR ++K+V I+  IP   Y+AVA+++  +   K
Sbjct: 560 KENKVPIIENKPLARLIYKEVDIDEEIPIDMYQAVAEILAMVLKMK 605


>gi|157363487|ref|YP_001470254.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
 gi|157314091|gb|ABV33190.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
          Length = 376

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 180/348 (51%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   KTE P+ ++   A  EG    S E ++  + L  +  + F F   I  + +   + 
Sbjct: 32  ADPEKTEKPTPRRRRKAREEGQVATSNELNMAVTFLVAVFVMRFIFQRLIMFLENGSILF 91

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +      L ++S  ++     ++    L+   L++ ++F      +Q   +L+   +K 
Sbjct: 92  FSLEENDFLNNLSGRIYQSFKDTIFLLVLLFLSLIISVIFAGA---MQTKFLLSFKPLKM 148

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             KR++  EG KR +S+ +L   +KS +K+++VG +    +  N+     +        L
Sbjct: 149 DLKRINPVEGFKRFFSMRSLFELLKSILKMVIVGFVAYSVIRSNWILFRFYSDMETVDSL 208

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F    +V++   + +  L ++D  +   ++   ++M+KQEIK+E ++  G+P ++ R
Sbjct: 209 KLIFNLTYEVMLKCAIALFILAIVDYFYQRWEFEKSIRMTKQEIKEEYREIEGSPEVRRR 268

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ I     R +M++    A ++ITNP+H A+A+ Y   E +APV++AKG + IA+K+ +
Sbjct: 269 QREIMARLARGRMLQQVPEADVVITNPSHIAVAIEYKSEEMEAPVVLAKGADEIAQKIIQ 328

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+NIP+   P +AR L+K   I   IPP  Y+AVA+++  +Y  +
Sbjct: 329 IAKENNIPVVRNPQVARELYKTTDIGEQIPPNMYRAVAEILAYVYSLR 376


>gi|226944866|ref|YP_002799939.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
 gi|226719793|gb|ACO78964.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
          Length = 402

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 173/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++  +   KTEA S +++E A  EG    SRE + F  +LA +  L          +  
Sbjct: 17  MADESSDQEKTEAASPRRLEKAREEGQVARSRELTTFLLLLAGIAALWSMGGLLHERLAE 76

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    + +  D + ++     L       ++P  LL  +  + +  +    +++ 
Sbjct: 77  VMEQALL-FERAQAFDSARMLARFWELGEGTLFTLLPLFLLMAVVALVAPSLLGGLLVSA 135

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R++  +G+KR++S   L    K+  K ILVG I    L +    ++      
Sbjct: 136 KALQPQLARLNPLKGLKRVFSTQALAELGKAVAKSILVGWIAVFFLRKYIDELMALSGMP 195

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A   +     MI+L +  +  LD+ +       KL+MSK+E++ E K+S G+P
Sbjct: 196 IREALADAMRLMALASAMIVLGLILVVALDVPYQLWSHARKLRMSKEELRQEHKESEGDP 255

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S  ++  R +MM     A +I+TNPTHYA+AL Y   +  AP +VAKG + +A
Sbjct: 256 HVKGRIRSQQQAMARSRMMSKVPTADVIVTNPTHYAVALSYRDGQMGAPRVVAKGADALA 315

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +P+ E   LAR+L+  V ++  IP   Y AVA+++   Y  +
Sbjct: 316 ARIRELGGEHAVPLLEAAPLARALYYHVDLDREIPVELYTAVAEVLAWAYRLR 368


>gi|288573010|ref|ZP_06391367.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568751|gb|EFC90308.1| flagellar biosynthetic protein FlhB [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 364

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 168/343 (48%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + +K      EG    S++    + I+A LI ++ F       + S +   L 
Sbjct: 15  EEKTEPATPRKRRKEREEGRVAKSQDLGASAVIIAGLIAVILFGGWIFDVILSFIRECLF 74

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L        L      +    ++P ++   +      + Q   V+    + P  
Sbjct: 75  FIGDGTLGRTGWFHSLTMRSISAYGLAIVPMVVGCFLAAFFVSVAQVGFVMTSKPLIPKM 134

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R +   G+K++ S+ +LV  +K  +K +++  ++  +L  +   M+  +       +  
Sbjct: 135 NRFNPISGLKKVISLRSLVEMVKGILKALILAIVLYSALRGDLADMVMAVRYPIGPAVSL 194

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
             + +  + + +   +  + + D  +   ++   +KMSKQEIK+E KQ  G+P IK + +
Sbjct: 195 LLWRIWLLCVKMTFLLLVIAIFDWSYQKWEFEKNIKMSKQEIKEEYKQMEGDPQIKQKIR 254

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R   + +MM    +A ++ITNPT  A+AL+Y + + DAPV++AKG+ L+A+++R+IA
Sbjct: 255 QKQREMAKQRMMADVPQADVVITNPTTLAIALQYDREKMDAPVVLAKGKGLLARRIREIA 314

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            E+++P+ E   LA +L   V +  +IP   YK+VA+++  +Y
Sbjct: 315 EENDVPVVENKPLAWALHDSVEVGESIPETLYKSVAEVLAFVY 357


>gi|239817109|ref|YP_002946019.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110]
 gi|239803686|gb|ACS20753.1| flagellar biosynthetic protein FlhB [Variovorax paradoxus S110]
          Length = 382

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   KTE  S +++E A  +G+   SRE + F  +   +  L         ++  
Sbjct: 1   MAE-ESDLEKTEPASPQRLEKAREQGDVARSRELATFVLLGTAVAGLWLTADSLGATLRG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L    +    D SH++     +   A   ++P   + ++  + + L+    +L+ 
Sbjct: 60  ALAQGL-HFDRAAAFDPSHMLARAGLMGQQALLALVPLFGMMLVAAVAAPLMLGGWLLSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++    G+ R++S   L    K+  K +L+G +  + + +N   +   ++ +
Sbjct: 119 KALAPKFSKLDPVAGVGRMFSAQALSELFKALAKSLLIGGVAWLVIMDNVDEVSALMAQS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L      V     +I   +  + ++D+ +    ++ KL+MS+++++ E K+S G+P
Sbjct: 179 ERAALPQMIVLVAHNCALIASALFLVALVDVPYQLWSYHRKLRMSREDLRQEHKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +   +   R +MM    +A I++TNPTH+A+AL+Y+  +  AP +VAKG +L+A
Sbjct: 239 HIKAQIRRQQQQMARRRMMSEVPKADIVVTNPTHFAVALKYVDHDMRAPRVVAKGSDLMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA E+N+ I E P L R+LFK   +   IP   Y AVA+++  +Y  K
Sbjct: 299 ARIREIARENNVAILEAPPLTRALFKHTRLGDEIPAGLYTAVAEVLAWVYQLK 351


>gi|260767957|ref|ZP_05876891.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|260615987|gb|EEX41172.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
          Length = 376

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 176/353 (49%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+  +  +KTE  S +K++ A  +G  P ++E +     LA  IY      P I+   +
Sbjct: 1   MSDQASSQDKTEKASPQKVKKAREQGQIPRAKEFTTAVIFLAVAIYFYAQL-PAIWQSIA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T+  L++   +V  L H       L++P  L+ ++  + S +I    +   
Sbjct: 60  GVFRYNLSLTRADLDNPMQMVEQLGHSLGMVIELLMPMFLVIIVVTLASSMILGGWLFRP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++ P   +++   GI RI+S  +LV  +KS +K+ ++  ++   L  +   ML      
Sbjct: 120 ANLLPKLNKLNPISGISRIFSTRSLVELVKSTLKVSVIFAVLYGYLDNHLQPMLGMQGLP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +         + + L+++   +    V+DI +   +   +LKM+KQE+K+E K + G P
Sbjct: 180 LNQGFILIMNILFEGLLLMGFALLVFGVIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I +   R ++ +   +A ++I NPTHYA+AL+Y    +DAP +VAKG +  A
Sbjct: 240 EIKQRIRQIQQQFARRRIDKMVPKADVVIVNPTHYAVALKYDPALSDAPFVVAKGVDETA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             ++++A ++ + I   P L RS++    I  A+P   Y AVA ++  +   K
Sbjct: 300 LHIQRLARDNQVEIIHSPPLTRSIYYTTAIEQAVPSQLYVAVAHILTYVLQLK 352


>gi|329897646|ref|ZP_08272170.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC3088]
 gi|328921095|gb|EGG28504.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC3088]
          Length = 383

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 176/351 (50%), Gaps = 1/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+END+   KTE P++K+I+ + ++G    S+E S+ ++++    ++  F    I  ++ 
Sbjct: 1   MAENDSTQEKTEEPTNKRIQKSRDDGQVARSQELSIAATVITVAGFMYLFGGAMIIKISE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                      + + D+S +   +    + A  +V P      +       +      + 
Sbjct: 61  QFAAAFV-FDPKHVFDVSGLTSRVGKGLMDALLVVAPLGAAAFVVSFLVSGVLGGYNFSW 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++ +  + +F K+  K +LVG +  + +      ++     N
Sbjct: 120 KAIAPKASKLNPLSGLKRMFGMKVVFDFFKTIGKFLLVGGLTYLLVDNYVGQLMFTSLMN 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +    ++  L +  + ++D  +   ++  KLKM+KQE+K+E K + G P
Sbjct: 180 FEGGLALGGSIIVFSFLVATLALIIIAMIDAPYQLQEYNKKLKMTKQEVKEEAKDTDGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R     +M+EA + A ++ITNP H+A+AL Y  T +  P LVAKG + IA
Sbjct: 240 EVKQRIRQKQRELASMRMLEAIADADVVITNPEHFAVALAYDPTGDLPPKLVAKGSDFIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +K+R+ A E  +P+F  P LARSLF    +N  IP   Y+AVAQ+I  I++
Sbjct: 300 EKIRERAKEEGVPLFTSPILARSLFFTTDLNGYIPEPLYEAVAQVIAFIFN 350


>gi|148266206|ref|YP_001232912.1| flagellar biosynthesis protein FlhB [Geobacter uraniireducens Rf4]
 gi|146399706|gb|ABQ28339.1| flagellar biosynthetic protein FlhB [Geobacter uraniireducens Rf4]
          Length = 354

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D   +KTE P+ K+I DA  +GN P SR+ +   +++A +I L         ++  
Sbjct: 1   MSEQD-KHSKTEQPTGKRISDAKEKGNIPRSRDLTSTVTLMAGIIALYVTGGFMFSTLKG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LLA    + +     +  L+  L  + + ++ P LL+ ++ G+ + + Q     + 
Sbjct: 60  SAKELLAGIATQDMTQAG-VYTLMLKLLFTTTLVLAPFLLVVVVAGLVAEISQGGISTSF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F++++  +G+KR+++ +  V  +KSF+KI++VG +    + +    ++  +  +
Sbjct: 119 EKIGFDFEKLNPVQGVKRLFNKDAAVQVLKSFLKIVIVGYMAYRVMRDEVNNLIYLVDMD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I         K+++     +  L+VLD+ +   ++   LKM+KQE+KDE K S G+P
Sbjct: 179 IGGITEFIGHISFKIVLHTCGALFILSVLDLIFVKWRFIENLKMTKQEVKDENKDSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + K     + R +M      A +++TNPTH+A+AL+Y + +  APV++AKG + +A
Sbjct: 239 HIKGKIKQKQFEQARRRMRLIIPTADVVVTNPTHFAVALKYDRQKMAAPVVLAKGADFLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++IA E NI + E   LAR L+ QV     IP   Y AVA+++  +Y  K
Sbjct: 299 QRIKEIARESNITLVENRFLARELYAQVKEGEEIPEALYAAVAEILAYVYSLK 351


>gi|299131771|ref|ZP_07024966.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2]
 gi|298591908|gb|EFI52108.1| flagellar biosynthetic protein FlhB [Afipia sp. 1NLS2]
          Length = 356

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 192/353 (54%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +  ++KT+ P++K++EDA   G+   S E + +  I      +  F       +T 
Sbjct: 1   MAE-EGDEDKTQDPTAKRLEDAHKRGDVAKSIEVNTWFMIAGATFIMSSFSGSIANKLTV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL  A + K +  S ++ L+  L       +     L ++  +GS+LIQ  PV ++
Sbjct: 60  PLKNLLEHAGRMKTDGPS-LLLLVGRLETVMLTALGIPFALLIVAAVGSHLIQHRPVWSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P F ++S   G KR++      NF K   K+I++G ++ + +   +      +  +
Sbjct: 119 DPITPKFSKLSPMSGAKRLFGKQAAANFAKGLFKVIVLGVVMAMVMWPEHERADVMVRID 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +L        K++  ++  +A +  LD  + Y  W+ + KMS QE+KDE KQS G+P
Sbjct: 179 PSLMLDLTRSMALKLMGTVVAMLAIVATLDYLFQYRSWFERQKMSLQEVKDEYKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +++  +R+R +MM A   A+++ITNPTHYA+AL+Y +    AP+ VAKG +LIA
Sbjct: 239 HIKGRIRALRVARMRKRMMAAVPTASVVITNPTHYAVALKYERG-MPAPICVAKGVDLIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  H+IP+ E   LAR+L   V I+  IP   Y AVA++I  +   K
Sbjct: 298 FKIREVAAAHDIPVVENVPLARALHASVEIDDEIPVEHYHAVAEVIGYVMKLK 350


>gi|332799194|ref|YP_004460693.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1]
 gi|332696929|gb|AEE91386.1| flagellar biosynthetic protein FlhB [Tepidanaerobacter sp. Re1]
          Length = 358

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 97/347 (27%), Positives = 178/347 (51%), Gaps = 1/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL-HVLL 66
           + +TE  + ++ + A   G    SRE +    +L   + +       + ++     H+L 
Sbjct: 8   EERTEKATPRRRQKARERGQVFSSRELNSALVLLGSFLLIKIVGKNFVMNIMDFFNHILT 67

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +  +  +  +  I      + + A +   P  L      + S  +Q   VL+L  V P 
Sbjct: 68  ETINREDIFTLEGIETFSYEILIFAGKNFAPVALGLSCICLISNYMQVGFVLSLEPVSPK 127

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +R++  EG KRI+S  +L+  +KS  KI +V  ++  ++ +        ++ N      
Sbjct: 128 LERINPLEGFKRIFSRRSLLELIKSIAKITVVAYVVCTAIIKYKDLFPLMLNMNLLDASS 187

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  +V +     +  ++ LD  + ++++ + L MSKQ+IK+E K+  GNP IK+R 
Sbjct: 188 LTLSIAFEVGMKAAATLLIVSALDYFYQWYEYETSLMMSKQDIKEEYKEVEGNPQIKSRI 247

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + R   R +MM+   +A ++ITNPTHYA+AL Y    + APV++AKG + +A+K+++I
Sbjct: 248 RQMQRQMARTRMMKDVEKADVVITNPTHYAVALAYDAALHSAPVVLAKGVDKLAEKIKEI 307

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A + ++PI E  +LA++L+K V I   IP   Y AVA+++  IY  K
Sbjct: 308 ATKEDVPIVENKALAQTLYKTVEIGDIIPESLYNAVAEILAFIYSLK 354


>gi|258624670|ref|ZP_05719605.1| flagellar biosynthetic protein [Vibrio mimicus VM603]
 gi|258583062|gb|EEW07876.1| flagellar biosynthetic protein [Vibrio mimicus VM603]
          Length = 375

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+ +  +KTE  S++KI+ A   G  P  +E +  +  LA ++ L +     I+   +
Sbjct: 1   MNEH-SSQDKTEQASAQKIKKARQGGQVPRVKEFTTAAIFLA-VVLLFYAQLDHIWQSMA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T++ L +   +V  L         +++P   + ++  +GS ++    +   
Sbjct: 59  GIFRFNMSLTKKDLGNTQQLVEQLGQSLAMVIEMLLPMFAVIIITTLGSSMVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++ P   +++   GIKR++S  +LV  +KS +K++++  ++   L  +   +L      
Sbjct: 119 ANMSPKLSKLNPINGIKRVFSTRSLVELLKSTLKVMVIFGVLYGYLDNHLQPLLGMQRLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    V+DI +   ++  +L+MSKQE+K+E KQ+ G P
Sbjct: 179 LPQGAILIMSILFEGLLLMSFALLIFGVIDIPYQRWEYLKELRMSKQELKEEFKQNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK+R + I +   R K+ +    A +++TNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EIKHRIRQIQQQFARRKINKTVPTADVVLTNPTHYAVALKYDTSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   +
Sbjct: 299 IHIQRIARENQVEIINSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVLQLR 351


>gi|90415339|ref|ZP_01223273.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2207]
 gi|90332662|gb|EAS47832.1| flagellar biosynthetic protein FlhB [marine gamma proteobacterium
           HTCC2207]
          Length = 382

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 186/352 (52%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D+ + + E P++K++E    +G    S+E  + + ++    +L  F S  I  +T 
Sbjct: 1   MSDKDSSEEREEEPTAKRLEKGREDGQVARSQELGVAAMMIGVAFFLYLFGSYIIADLTK 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  +  ++ + D S +V      ++++  +V+P  +L ++  I S  I    + +L
Sbjct: 61  VFASGF-TFDRKAVFDTSLLVPAFGIQAVNSFIVVVPIFVLAVIIAIASAGIMGGYIFSL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KR++ +  +V+  K+  K  L+  ++ + ++ N+  +      +
Sbjct: 120 KSLAPKASKINPMAGLKRMFGMKAVVDLSKALSKFALIALVLYLVVSANFPMLTKLGFMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A   +    +++ L +     +DI +  H +  ++KM+KQE+K+E+K + G P
Sbjct: 180 LEPAMAEAGRIIAFGTVLVTLTLIVAAAIDIPYQLHTFNKQMKMTKQEVKEEMKDTEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +   R      MM A + A ++I NP H+A+AL Y  ++N AP++VAKG +L+A
Sbjct: 240 EVKAQIRRKQREIATGMMMSAIADADVVIVNPEHFAVALSYDPSKNGAPIMVAKGADLLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           K +R+ A E  IP+F  P LARS+F    IN ++P   Y AVAQ+I  I++ 
Sbjct: 300 KAIRERAKEEGIPLFSSPVLARSIFYTTEINQSVPESLYYAVAQVIAYIFNL 351


>gi|147678408|ref|YP_001212623.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum
           thermopropionicum SI]
 gi|146274505|dbj|BAF60254.1| flagellar biosynthesis pathway, component FlhB [Pelotomaculum
           thermopropionicum SI]
          Length = 357

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 178/353 (50%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+       +TE  + ++I++A  +G    S + +    + A +  L          +  
Sbjct: 1   MA--GGTQERTEQATPRRIQEARRKGQVARSTDLTGALCLAAMVALLYAVKDEFFLDLQR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L    +      +        +L    L +++L+ P + + ++  + S L+Q   + + 
Sbjct: 59  YLGWYFSQVAGF-IASEEVPGAVLYDTVLFSAKLMAPFIAVPVVTAVVSNLVQVGFLFST 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P    ++   G++RI+S  +LV  +KS  K  ++G I    +  N   +L   +  
Sbjct: 118 EALNPKLSVLNPATGLQRIFSSRSLVELVKSVFKFTVIGIITYYLIKANLADLLLVFNRP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       + KV     +    L++LD  +  +++   L MS+QE+K+E +Q+ G+P
Sbjct: 178 PGGIYREVAGFILKVAGWAAVAYLILSLLDYIYQRYEYKKSLMMSRQELKEEFRQTEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+RQ+ + R+   ++++    +AT+++TNPT  A+ALRY Q +  AP +VAKG   IA
Sbjct: 238 LIKSRQREMRRAISLNRIISEVPKATVVVTNPTSLAVALRYEQGQMPAPKVVAKGAGRIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++++IA EH++PI E   +AR ++  V ++  IP   Y+AVA+++  +Y  K
Sbjct: 298 GRIKEIAREHDVPIVENKEIARFIYYNVELDQVIPFEIYQAVAEILALVYRLK 350


>gi|154253017|ref|YP_001413841.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans
           DS-1]
 gi|154156967|gb|ABS64184.1| flagellar biosynthetic protein FlhB [Parvibaculum lavamentivorans
           DS-1]
          Length = 359

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    KTE P+ +K+E+A  +G+   S+E S +  ++     +         S+  
Sbjct: 1   MADQDDS-EKTEEPTHRKLEEAHKKGDLVKSQEVSTWFVMIGGATAIALMAPSTASSLMG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L V LA      + D  H+  +  ++  SA   +I  L + +   +  +LIQ  PV   
Sbjct: 60  SLTVFLAQPETIPM-DAEHLRRIWLNVGSSAFMSMIGPLAVLVGAALVGHLIQHAPVFTA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++KP   ++S +EG++R++   +L+N  K  +K+ +VG++  + +      +   ++  
Sbjct: 119 ENMKPKLSKISPKEGLQRLFGPKSLMNLAKGILKLTIVGSVSVLIIWPERDRLALMMTWE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +L        K+   ++  +  +  LD  +   QW  K +MS QE+KDE KQ  G+P
Sbjct: 179 IAQLLPLVQMLALKMFAGVIAVMTVVAALDYLFERMQWMKKQRMSIQEVKDEYKQMEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + I   R R +MM A   AT+IITNPTHYA+AL+Y Q    APV+VAKG + +A
Sbjct: 239 TVKAKLRQIRAERGRKRMMAAVPTATVIITNPTHYAVALKYEQG-MGAPVVVAKGVDAVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH +PI E P LAR+L   V I+  I P  YKAVA++I  +   K
Sbjct: 298 FRIREVGQEHEVPIIENPPLARALHATVDIDQEIQPEHYKAVAEVIGYVMRLK 350


>gi|301165899|emb|CBW25472.1| flagellar biosynthetic protein [Bacteriovorax marinus SJ]
          Length = 361

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 175/354 (49%), Gaps = 2/354 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+ END+   KTE PS+ +IE+    G    S+E +    +   L+ L       +Y V 
Sbjct: 2   MADENDSDAEKTEDPSAHRIEEFRKRGEVASSKELTSVLVLAGSLMTLGLSMVY-MYEVL 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
           S+    L             +  ++  L   + + V P  L+ +  G+ + + Q   + +
Sbjct: 61  SEFIEWLYHLDVSTAYTAKSMNTIVNKLVTVSLKSVAPIFLVTLSIGVAANMAQIGVLFS 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++    R++  +GIKR++S+ +LV  +K   K I +  I+   L +   T   F   
Sbjct: 121 PDVLEWKPDRINPLQGIKRLFSMKSLVEAIKGVFKFIFILGIVYFFLKDEMHTFGGFFHL 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +      +    + ++   I++ +  + + D  +    +  KL M+K+E K E KQ  GN
Sbjct: 181 DFFQSFLYGKGFLIRLGFAIVVGLIVIAIGDFAYQKFSYKKKLMMTKEEAKQEHKQQDGN 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK R +++ R   + ++M    +A +I+TNPTH ++AL+Y      +P ++AKG +++
Sbjct: 241 PEIKQRIRAVQREMSQRRVMSEVPKADVIVTNPTHISIALKYDPETMISPEVIAKGADVL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+IA  H+IPI E   LAR L+K V     +P   YKAVA+++   Y  K
Sbjct: 301 ALKIREIAKGHDIPIVENVPLARGLYKTVKEGQGVPRNLYKAVAEVLAFTYKLK 354


>gi|254473324|ref|ZP_05086721.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
 gi|211957440|gb|EEA92643.1| flagellar biosynthetic protein FlhB [Pseudovibrio sp. JE062]
          Length = 353

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 121/353 (34%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+  PD+KT+ P+ KK+ DAL +GN P+S+EAS+ +S+L  L+ L F        +  
Sbjct: 1   MSEDQDPDSKTQEPTEKKVRDALEKGNIPVSKEASVLASMLGLLLILSFIAVDKAQGLVQ 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +  +      +  + L++ ++      + P + L + FG+ S  +Q  P L L
Sbjct: 61  FLKWFLDNPGEISFVSAAEPLQLMSAVAFELVWFLGPIVALLIFFGLASSFMQNTPRLVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P   ++SL++G  R++S+N  + F+KS  K++ V  +  + L       L  + ++
Sbjct: 121 DRIEPKLSKISLKKGFGRLFSVNGAMEFIKSLFKLVTVIVVAALVLKSQQAVALTSMYSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +          +L  I +    L   D+  +  QW   L+MS QE+KDE KQ+ G+P
Sbjct: 181 PTQLPQLILSVAMTLLSGICVATIFLVGFDLVLARFQWRKNLRMSHQELKDEFKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +S+AR R R +MM +   AT+++ NPTH+A+AL Y +  + AP +VAKGQ++IA
Sbjct: 241 LIKARLRSLARDRARKRMMSSVQDATVVVANPTHFAVALYYERDGDQAPRVVAKGQDIIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K++++AY H++P+ E+  LARSL+  V I+ +IP  +Y+AVA++I  +Y K+
Sbjct: 301 LKIKELAYIHDVPVVEDRQLARSLYAAVEIDQSIPEEYYRAVAEIISYVYLKR 353


>gi|167626135|ref|YP_001676429.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
           HAW-EB4]
 gi|167356157|gb|ABZ78770.1| flagellar biosynthetic protein FlhB [Shewanella halifaxensis
           HAW-EB4]
          Length = 377

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 181/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+  +KTE  + +K++ A  +G  P S++ +  + I+ C + LL   +  I +  +
Sbjct: 1   MSNKDSGQSKTEKATPQKLKKAREQGQVPRSKDLASSALIIGCSL-LLTTTADWIAAKVA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +  S T+ +L++   +   L +  L    ++ P  L+  +  + +  +   P+ N 
Sbjct: 60  AMTRINMSFTKAQLDEPGMMARHLAYSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N+    + R+    G+ R+ S+ +LV  +KS +KI+L+  I+ + L +N+  ++      
Sbjct: 120 NNANFKYSRIDPIAGLGRMASVKSLVELVKSILKIVLLIGIMLLFLQKNFQALMAVSQLP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   +  + L +  +T +D+ + Y   + +L+MS QE+KDE KQ  G P
Sbjct: 180 IDEAVTRGIEMLSLAMFYMGLGLLVITFIDVPYQYWHHHKELRMSLQEVKDEYKQQDGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + +   R +   +  +A +++ NP+HYA+AL+Y   + DAP ++AKG + +A
Sbjct: 240 EVKAKIRQMQQRISRSRADVSVPKADVLLVNPSHYAVALKYDMNKADAPYVLAKGTDELA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR IA  +++ + E P L R+++    +   IP   + A+A ++  +   +
Sbjct: 300 LYMRDIAKRNDVEVLELPPLTRAIYYSTQVEQQIPSGLFIAIAHVLTYVMQLR 352


>gi|91976176|ref|YP_568835.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisB5]
 gi|91682632|gb|ABE38934.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisB5]
          Length = 357

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 187/353 (52%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D  + K + P+ K+++DAL  G+   S+E + +  I    + L  F       VT 
Sbjct: 1   MSD-DNDEEKQQEPTQKRLDDALKRGDVAKSQEVNTWFVIAGATLLLSSFSGSIGTGVTG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L+  +   K++    +    + L +  S L +P  LL M+  IGS LIQ   V + 
Sbjct: 60  PMRALIEKSWMLKVDGAGLLALTKSLLLMLVSVLGVPLFLL-MLVAIGSNLIQHRLVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++S  EG KR++    L NF+K   K+I +G ++   L      +   +  +
Sbjct: 119 EGLTPKLSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S+L        K++  +   +A +   D  + Y  W+ + KMS QE+KDE KQS G+P
Sbjct: 179 VVSLLGVTVGLTLKLMGSVAAVLAFVAAGDYFFQYRTWHERQKMSLQEVKDEYKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I   R++ +MM A   A+++ITNPTH+++AL+Y +    AP+ VAKG + IA
Sbjct: 239 HIKGRIRQIRYQRMKKRMMAAVPSASVVITNPTHFSVALKYERG-MQAPICVAKGADAIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  +N+PI E   LAR+L+  V ++  IP   Y AVA++I  + + K
Sbjct: 298 FKIREVAKANNVPIVENVPLARALYATVEVDGEIPIEHYHAVAEVIGYVMNLK 350


>gi|212637760|ref|YP_002314285.1| flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
 gi|212559244|gb|ACJ31698.1| Flagellar biosynthetic protein FlhB [Shewanella piezotolerans WP3]
          Length = 393

 Score =  344 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 182/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+  +KTE  + +K++ A +EG  P S++ +  + I+ C + L    +  I +  +
Sbjct: 17  MSNKDSGQSKTEQATPQKLKKAKSEGQVPRSKDLASSALIIGCSLMLT-TSADWIAAKVA 75

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T+ +L++   ++  L    L    ++ P  L+  +  + +  +   P+ N 
Sbjct: 76  KMTRTNMSFTKAQLDEPGMMMRHLGQSLLEVLNILGPLFLMVALIAMVAGAMPGGPIFNF 135

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    GI R+ S+ +LV  +KS +KI+L+  I+ + L +N  T+L F    
Sbjct: 136 KNAAFKYSRIDPIAGIGRMASVKSLVELVKSILKIVLLMGIMWLFLEKNLQTLLSFNQLP 195

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   +  + L +  +T +D+ + Y   +++LKMS QE+KDE KQ  G P
Sbjct: 196 VDEAVSKGIEMLSLGMFFLGLGLLLITFIDVPYQYWHHHNELKMSLQEVKDEHKQQDGKP 255

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + +   R +   +  +A +++ NPTHYA+AL+Y   + DAP ++ KG + +A
Sbjct: 256 EIKAKIRQMQQRISRSRADISVPKADVLLVNPTHYAVALKYDIDKADAPYVLTKGTDELA 315

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A  H++ + E P L R+++    ++  IP   + A+A ++  +   K
Sbjct: 316 LHMREVAKRHDVEVIELPPLTRAIYYSTKVDQQIPAALFIAIAHVLTYVLQIK 368


>gi|294339803|emb|CAZ88166.1| Flagellar biosynthetic protein FlhB [Thiomonas sp. 3As]
          Length = 373

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K    S K+ + A  +G    SR+ +  S +L  +  +++      Y +  
Sbjct: 1   MAE-DSAQEKELPASQKRKQQAREKGQVARSRDLTS-SLLLLGMAAVVYTAGGWFYDMGR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + +    +D + ++     + +    ++ P L L  +      +     V + 
Sbjct: 59  ELLQTGLTVSASASQDPAAMLQAAGRVLVLGLIVLAPVLALTFVASAAGGVAMGGWVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+   +GI R++SI  L    K+ +K I++  I  I +      +L  +   
Sbjct: 119 EALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVIWNERGELLGLLQVE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P            +  + +      +  +D+ W   Q   KLKMS+Q+++DE+++S GNP
Sbjct: 179 PQLAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKLKMSRQDLQDEMRESEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + R R R +MM A  +A +++TNPTHYA+AL Y + +N APV++A G + +A
Sbjct: 239 QIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYKEGKNRAPVVLALGADRVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+L+    +   IP   Y AVA L+  ++  +
Sbjct: 299 ARIREVAAEHNVPVIEAPPLARALYHHAELEQEIPVALYNAVALLLAYVFQLR 351


>gi|54297699|ref|YP_124068.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str.
           Paris]
 gi|53751484|emb|CAH12902.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str.
           Paris]
          Length = 382

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++ +    +L   +    F       + S
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +        +  L   ++ +  L  L+ S    V+P LL+  +  + + L+    V + 
Sbjct: 61  IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R+++ +G KR+ S+   V  +K+F+K +LV +   + L      +L+   A 
Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+  +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352


>gi|317129190|ref|YP_004095472.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM
           2522]
 gi|315474138|gb|ADU30741.1| flagellar biosynthetic protein FlhB [Bacillus cellulosilyticus DSM
           2522]
          Length = 359

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 168/346 (48%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +++  +G    S + +    +L   +      S  +  +         
Sbjct: 12  QEKTEKATPKKRKESRQKGQVSKSSDVNTSFILLFVFLAFWLMGSFSVDQLIGITRYSFQ 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                +L + +++  +  + S+ A+ +V P + + M+  I S  +Q   +     +K   
Sbjct: 72  EYLLMELTE-ANVYSMFINFSIQAAIVVGPFMFIAMLAAIFSNYLQVGILFAPEAIKMKL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++   +G KRI+S+  LV F+KS +KI+ VG      +      +L     +    +  
Sbjct: 131 SKLDPIQGAKRIFSVRALVEFLKSLLKIVCVGFAGFTVIWIAIDDILMLSLYSVGESVRL 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  + + +   +  L+V D  +  +     +KMSKQ++KDE K++ G+P+IK++ K
Sbjct: 191 IGNLLIMMGLAVAFLLIFLSVFDYLYQKYDHEKNIKMSKQDVKDEYKKTEGDPLIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM    +A ++ITNPTHYA+AL+Y      AP++VAKG + IA K+  IA
Sbjct: 251 EKQRQMAMSRMMAEVPKADVVITNPTHYAIALKYDDQNMAAPIIVAKGVDFIALKVINIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +N+   E   LAR+L+ Q  I   +P   +KAVA+++  +Y  +
Sbjct: 311 KNNNVMTVENRPLARALYAQADIGDPVPEDLFKAVAEVLAYVYRIQ 356


>gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
 gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
          Length = 614

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 189/347 (54%), Gaps = 1/347 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             D KTE  + KK  D+  +G    S++  L  +++A ++ ++      + S+  ++   
Sbjct: 261 GADEKTEEATPKKKSDSRKKGQIARSKDVGLAITMIATVLVVVALSGFIVSSLKDNVVYF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L      ++ + + I  + T +   A+ +++P +L  M+ G+ + L+Q   ++  + +KP
Sbjct: 321 LGDMGSMEVTE-NSIKGINTLIISKAAMVIMPVILPIMIAGVAASLVQSGFLVVKDAIKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           SF +++   G K ++S  +LV  +K+ + I +V  I    + +N+  ++   +    ++ 
Sbjct: 380 SFGKLNPINGFKNMFSKKSLVELIKNLILIAIVIFIAYSYIRDNFDKIMQIGNLYLPTLG 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  + + I + +  + ++D    Y  +   ++M+KQEIK+E KQ  G+P IK++
Sbjct: 440 IEVKSLIVGIFVKICILLVVIAIIDYVVQYMLFQKDIRMTKQEIKEEYKQMEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R   + +MM++   AT++ITNPTH A+A++Y + + +AP +VAKG + IA K+++
Sbjct: 500 IKQRQREMSQRRMMQSVGDATVVITNPTHLAVAIKYEEGKTEAPKVVAKGADTIAIKIKE 559

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A E  +PI E   LAR +F+ V I+  IP   Y+AVA+++  +Y  
Sbjct: 560 KAIESKVPIIENKPLARMIFESVEIDKEIPQDMYQAVAEVLAMVYKL 606


>gi|254517020|ref|ZP_05129078.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3]
 gi|219674525|gb|EED30893.1| flagellar biosynthetic protein FlhB [gamma proteobacterium NOR5-3]
          Length = 384

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      +TE P+ ++ E+A  +G  P SRE +   S+L   + L       + ++ +
Sbjct: 1   MAEEQTGQERTEQPTERRKEEARRKGQVPRSRELNTMLSLLITGVGLWVLGGGLVDNLLA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  S  +  + D   +     H+ +SA   + P   + ++  +   LI      +L
Sbjct: 61  ITSAGF-SVDRAAVFDTQQLPVHFMHMVISALLALAPLFAVTVVAALAGPLIMGGWSFSL 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    +++   +G+ R++S+  L    K+ +K +L+  +  + +      +L   +  
Sbjct: 120 EAMAFKLEKLDPVKGLGRVFSLKGLAELAKALIKFLLLMGVAYLMIMSFERQILTLSALT 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P          +   LI++   +  + + D+ +    +  +L+M++QE++DE+K++ G P
Sbjct: 180 PGEASARVVTMLVTALIILSSAMVLIVMFDVPFELWNFNKQLRMTRQEVRDEMKETDGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +++ R   + +MM+    A ++ITNPTHY++AL Y    + AP +VAKG++LIA
Sbjct: 240 EVKQRIRNLQREVSQRRMMQDVPTADVVITNPTHYSIALSY-SDGSGAPRVVAKGRDLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R IA EH +P++E P LAR+L+    +   IP   Y AVA+++  ++  +
Sbjct: 299 LQIRTIAQEHEVPLYEAPPLARALYASTEVGDEIPGDLYLAVARVLAYLFQLR 351


>gi|92116950|ref|YP_576679.1| flagellar biosynthesis protein FlhB [Nitrobacter hamburgensis X14]
 gi|91799844|gb|ABE62219.1| flagellar biosynthetic protein FlhB [Nitrobacter hamburgensis X14]
          Length = 359

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/353 (32%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+++DAL  G+   S+E + +  I    + L  F       V  
Sbjct: 1   MADESDDTEKTEDPTQKRLDDALERGDVAKSQEVNTWFVIAGATLVLATFGGSVGGGVEM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+A++ Q +  D   ++ L   L    +  +   LL+ M+  I   ++Q   V + 
Sbjct: 61  PLRNLIANSWQIR-TDGPGLLALAQQLEYILAAALGLPLLMLMLAAIAGNVVQHRFVWSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++S+  G KRI+      NF K   K++ +G ++T  L      +   +  +
Sbjct: 120 ETLKPKLSKISVVSGAKRIFGKQAAANFAKGLFKVLALGAVMTAVLWPERSRLDALVRLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P++IL        ++L  ++  +A + + D  + Y QW+ + KMS +E+K+E KQS G+P
Sbjct: 180 PNAILPTTTTLTLQLLGAVVAMLALVAIADYLFQYRQWFERQKMSLREMKEEFKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + +  +R++ +MM A  +A++IITNPTHY++AL Y +    APV VAKG + IA
Sbjct: 240 HIKARIRQLRHARMKKRMMAAVPKASVIITNPTHYSVALSYERG-MSAPVCVAKGMDNIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+IPI E   LAR+L+  V I+  IP   Y AVA++I  +   K
Sbjct: 299 LKIREIAREHDIPIVENVPLARALYATVKIDDEIPVEHYHAVAEIIGYVMGLK 351


>gi|54294673|ref|YP_127088.1| flagellar biosynthesis protein FlhB [Legionella pneumophila str.
           Lens]
 gi|53754505|emb|CAH15989.1| Flagellar biosynthetic protein FlhB [Legionella pneumophila str.
           Lens]
          Length = 382

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 185/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++ +    +L   +    F       + S
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +        +  L   ++ +  L  L+ S    V+P LL+  +  + + L+    V + 
Sbjct: 61  IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R+++ +G KR+ S+   V  +K+F+K +LV +   + L      +L+   A 
Sbjct: 120 QSIQPKFSRLNVLKGFKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQEAARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+  +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352


>gi|225569959|ref|ZP_03778984.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM
           15053]
 gi|225161429|gb|EEG74048.1| hypothetical protein CLOHYLEM_06054 [Clostridium hylemonae DSM
           15053]
          Length = 353

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 101/347 (29%), Positives = 182/347 (52%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  D   EGN   S +      +      L   F     +  + +   
Sbjct: 2   AADSKTEKATPKKRRDERKEGNIFQSSDVVNVVFVFLSFYILKLIFPGIYETSGNFMKRF 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           ++ A          +         +A+R V+P   + M+ GI  + IQ   +    + +P
Sbjct: 62  ISLAGSITDLSGQSVGKYGMEFLSAAARTVLPFACICMVTGIVMHGIQTRFLFTSKNFRP 121

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R+S  +GIKRI+++ N +  +K+ +K+I++  II   L ++   ++  +  +  +  
Sbjct: 122 KLNRISPLQGIKRIFALKNAIELVKNLLKVIVLVAIIYTLLKQDAVNVIRTMDMSISASA 181

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            + F  +  +++ + +  A +  LD  + +  +  K+KMSKQE+K+E KQ+ GNP IK R
Sbjct: 182 AYTFDMIISMILRVSMVFAVIAFLDYLFQWWDYERKIKMSKQEVKEEFKQTEGNPEIKGR 241

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + I + R R +MM+A   A +II NPTH+A+AL Y   +N+APV+VAKG + +A ++ +
Sbjct: 242 IRDIQKQRARSRMMQAVPNADVIIRNPTHFAVALSYDTEKNNAPVVVAKGVDELALRIVR 301

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
              E+++ + E+  LARSL+ +  +N  IP  +Y AVA+++  +Y  
Sbjct: 302 TGEENHVAVIEDRPLARSLYAETELNREIPSEYYGAVAEILVYVYKL 348


>gi|84502407|ref|ZP_01000543.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis
           HTCC2597]
 gi|84389219|gb|EAQ02016.1| putative flagellar biosynthetic protein flhB [Oceanicola batsensis
           HTCC2597]
          Length = 374

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/357 (30%), Positives = 195/357 (54%), Gaps = 4/357 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   NKTE P+ +K+  A  +G+ P SRE     S+++  +  +FF      ++  
Sbjct: 1   MAENEDQTNKTEEPTPRKLRQAREKGDVPSSREVGNMMSVMSLFLVAIFFLPQLGPTLVG 60

Query: 61  DLHVLLASATQRKL----EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            L  +  +A Q ++    + +  +  +   LS   + ++ P     ++  + + LIQ   
Sbjct: 61  TLRRVFENAGQVRIGEDVQGLRDLGQVTMELSGGLATVLAPVAATMLLAAVAAVLIQGEV 120

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V+ ++ + P   +++  +G K+I+SI++ V F+KS  K+++VG I           +   
Sbjct: 121 VVAVDRITPKLSKINPIQGFKKIFSIDSFVEFLKSVAKVLVVGGISIYIAQIAVRGIWQT 180

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
               P S+L +       +LI + L +  L+V D+ W   QW  K +MS QEI+DE K+ 
Sbjct: 181 EGVTPESVLSYIGRYAALLLITVTLLLTVLSVADVMWKRFQWMKKQRMSVQEIRDEHKEM 240

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P+I+ ++    R R + ++  A  +AT+++TNPTH+A+ALRY    + APV VAKG 
Sbjct: 241 EGDPLIRAKRAEQRRKRAQQRITTAVPQATVVLTNPTHFAVALRYDNGTDQAPVCVAKGV 300

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +L+A ++RK+A E+ +P+ E   LAR+L+    I+  IP   ++AVA++I  +   K
Sbjct: 301 DLMAAQVRKVARENEVPVVENKPLARALYDVAEIDEEIPFEHWQAVAEIIGYVMDLK 357


>gi|326791523|ref|YP_004309344.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM
           5427]
 gi|326542287|gb|ADZ84146.1| flagellar biosynthetic protein FlhB [Clostridium lentocellum DSM
           5427]
          Length = 372

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 176/349 (50%), Gaps = 1/349 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE  + KK EDA  +G    S E +    I+      L      +  + + +   
Sbjct: 16  ESEGRTEKATPKKKEDARKKGQVAKSAELNTAVLIVGFCAVSLLLGGYMLSGIQTSIITS 75

Query: 66  LASATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +   ++   E  S+ ++ +          + +P  +   + G     IQ    ++   +K
Sbjct: 76  MNRLSEVFNEVTSNYMLVVFRSAIFDILWICLPLWICLFIIGFIVSYIQVGYKVSFEPMK 135

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
             F +++   GIKRI S + +V+ + S  K+I++G I+   +       + F       I
Sbjct: 136 VKFSKMNPINGIKRIISKDMIVSLILSAAKVIVLGAIVYNIILSKIPIFMRFYELTIEQI 195

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L     TV ++   +      L VLD  +  ++    +KM+KQEIK+E K + G+P IK+
Sbjct: 196 LNTIAMTVVQIGFFVGGAFLVLAVLDYVYQRYKHADSIKMTKQEIKEEYKNAEGDPQIKS 255

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + K   R     +MM+A   A +IITNPTH+A+A++Y +++  APV+VAKG + +A+K++
Sbjct: 256 KIKQKMREGSMRRMMQAIPEADVIITNPTHFAIAIKYDESKGTAPVVVAKGVDYVAQKIK 315

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + A EH+I I E   LAR+L+  V +N  IPP  Y AVA+++  IY+ +
Sbjct: 316 EKAKEHHIEIVENKPLARALYYTVDLNKEIPPELYGAVAEVLAFIYNLQ 364


>gi|148359330|ref|YP_001250537.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby]
 gi|296107377|ref|YP_003619077.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281103|gb|ABQ55191.1| hypothetical protein LPC_1227 [Legionella pneumophila str. Corby]
 gi|295649278|gb|ADG25125.1| flagellar biosynthetic protein FlhB [Legionella pneumophila 2300/99
           Alcoy]
          Length = 382

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++ +    +L   +    F       + S
Sbjct: 1   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +        +  L   ++ +  L  L+ S    V+P LL+  +  + + L+    V + 
Sbjct: 61  IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R+++ +G+KR+ S+   V  +K+F+K +LV +   + L      +L+   A 
Sbjct: 120 QSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE K++ G P
Sbjct: 180 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++AKG+NL+A
Sbjct: 240 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+  +
Sbjct: 300 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 352


>gi|58579708|ref|YP_198724.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58424302|gb|AAW73339.1| HrcU [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 423

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 8/349 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      KTE P+ KK+ DA  +G  P+S + +  + +   L+ +       +  + +
Sbjct: 65  MSE-----EKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRA 119

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              +           D + I   L H+ +    L++P L   ++ G+     Q     +L
Sbjct: 120 LTRIGFD--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASL 177

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      
Sbjct: 178 KPVSPKFDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYET 237

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I   A+ T+  +  + +L    +   D    +  +    +MSK E K E K+S G+P
Sbjct: 238 PLDISQIAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDP 297

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK ++K  A+  +     +  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A
Sbjct: 298 EIKGKRKEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGA 357

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            ++R  A+   IPI   P LAR+L+ QV +  AIP   ++ VA ++  +
Sbjct: 358 LELRAFAHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 405


>gi|261341518|ref|ZP_05969376.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
 gi|288316316|gb|EFC55254.1| flagellar biosynthetic protein FlhB [Enterobacter cancerogenus ATCC
           35316]
          Length = 377

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 178/353 (50%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+   A  +K+E P+++K+  A  +G+ P S++ ++   +LA  I +  FF    Y    
Sbjct: 1   MA---AGGDKSEKPTAQKLRKAREKGDLPRSKDLTMAVGLLASFITMGTFFP--YYKTLV 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +           +L+D   +   L        R +I  L    +  I + L+    V  +
Sbjct: 56  EESFTSVGMMAGRLDDQGALSQFLMLNVWVIIRFII-TLAPIPLACIVASLVPGGWVFTV 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP FK++S   G+KR++S ++ V+  K  +K  ++  ++   +  +   +L     +
Sbjct: 115 SKLKPDFKKLSPISGVKRMFSSSHYVDVGKMMLKCGIILAVLYTMVHSSLNPLLHLQRLS 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               ++H F  +  VL+  +  I    +LD+  +   +  K++M+KQE+K+E K + GNP
Sbjct: 175 LSQAIHHGFGILHHVLVYFIAVIVIFALLDVPLAKFMFTKKMRMTKQEVKEEYKNNDGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R     ++      A +IITNPTHYA+AL+Y   + +AP +VAKG + IA
Sbjct: 235 QIKGRIRQLQRQMAMGQINRTVPEADVIITNPTHYAVALKYDPKKAEAPYIVAKGMDDIA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R +A  H I + E P LAR+++    +N  IP   ++A+A ++  +   K
Sbjct: 295 LHIRDVARHHQIEVVEFPPLARAVYHTTRVNQQIPAQLFRAIAHVLTYVMQIK 347


>gi|189426336|ref|YP_001953513.1| flagellar biosynthesis protein FlhB [Geobacter lovleyi SZ]
 gi|189422595|gb|ACD96993.1| flagellar biosynthetic protein FlhB [Geobacter lovleyi SZ]
          Length = 357

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 184/355 (51%), Gaps = 3/355 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D   +KTE P+ +++E A  +G  P S+  S   ++LA ++ L    S  +  + S
Sbjct: 1   MAEDDDKHSKTEQPTGRRLEKAREKGAPPSSQMLSQSFTLLAGIVVLYLLGSYLMNGLKS 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               + +     +L +  ++  ++  +      L+ P +L  M  GI ++++Q    L+ 
Sbjct: 61  TTVQVYSQIGTFELTE-QNVYTMMLRIFGVLFMLLAPVILAVMSTGILAHIVQDNGRLDF 119

Query: 121 NH--VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               +     +++   G  ++++   LV  +KS +KI ++G I    L +    +     
Sbjct: 120 QWGRITFDISKLNFISGFGKLFNKEALVEILKSLIKIFVIGWIAYQVLRDELQNITVLAE 179

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           ++ + IL +      K++      +  +++LD+ +   ++   LKM+KQE+KDE K   G
Sbjct: 180 SDVNGILSYTGHVAFKIVTHTCGIMIVISILDMAYVKWRYIENLKMTKQEVKDETKDMEG 239

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP IK + K +     R ++ +    A ++ITNPTH+A+AL+Y ++   AP+++AKG + 
Sbjct: 240 NPEIKGKIKRLQFQAARRRLTKIIPTADVVITNPTHFAVALKYDRSRMVAPMVIAKGADE 299

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A  ++++A EH + + E   LAR L+ QV  N  IP   Y AVA+++  +Y  K
Sbjct: 300 MALAIKEMAREHKVTLVENRFLARELYDQVAENQEIPESLYAAVAEVLAYVYRLK 354


>gi|114777581|ref|ZP_01452562.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1]
 gi|114552052|gb|EAU54569.1| flagellar biosynthesis protein [Mariprofundus ferrooxydans PV-1]
          Length = 355

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 173/353 (49%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      +TE  + K+ EDA  +G    S+E S   +     + ++            
Sbjct: 1   MADEQDKSQQTEEATPKREEDARKKGQIATSKEPSTAIAFTVISLIVITGLGSWFGEQMQ 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S           +  LL       + +V+P  +  M+ G+    +   PV   
Sbjct: 61  HMLTNYLSGAVHIKATGEGMQKLLISAVTDMAMVVLPIAVPIMLLGLLVTFMVSGPVFTF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F+++S  +GIKR++S   L  F+KS +K++L+       ++  +  +L     +
Sbjct: 121 ETMIPKFEKISPLKGIKRLFSTKALAEFIKSVLKLVLISVACATIVSGMFSEILHTALKD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I     F   K+  ++ +    + + D+ +   +    L+MSK+E +DE K S G+P
Sbjct: 181 PADIAALTLFGSVKITTLVAVIFVVIALADVLYQRWEHAKSLRMSKKEQRDEHKDSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + I   + +++MM     A +IITNPTH ++AL Y      AP ++AKG+  +A
Sbjct: 241 QLKAKIRQIQMQQAQNRMMSDVPDADVIITNPTHISIALAYDPLSPGAPRVLAKGKGHLA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EH+IP+ E   LARSLFKQV +   IP V ++A+A ++ +I+  K
Sbjct: 301 AKIREIAREHHIPMRENKPLARSLFKQVKVGDEIPEVLFEAIAIILAEIFRLK 353


>gi|86750881|ref|YP_487377.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           HaA2]
 gi|86573909|gb|ABD08466.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           HaA2]
          Length = 358

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 113/353 (32%), Positives = 190/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D+   K E P+ K+++DAL +G+   S+E + + +I    + L  F       +T 
Sbjct: 1   MSD-DSDQEKQEEPTQKRLDDALEKGDVAKSQEVNTWFAIAGATLLLSSFSGSIGSGITG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L+  +    ++ +  +    + L +  S L +P L L  +  IGS LIQ   V + 
Sbjct: 60  PMRTLIEKSWMLPVDGVGLLALTKSLLLMLISVLGVP-LGLLALVAIGSNLIQHRLVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F ++S  EG KR++    L NF+K   K+I +G ++   L      +   +  +
Sbjct: 119 EGLKPKFSKLSPLEGAKRLFGKQALANFLKGLFKVIALGVVMVAVLYPERDRLDALLQMD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S+L        K++  +   +A +   D  + YH W  + KMS QE+KDE KQS G+P
Sbjct: 179 VVSLLGVTVSLTLKLMGTVAAVLAFVAAGDFFFQYHTWRERQKMSLQEVKDEYKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I   R++ +MM A   A+++ITNPTH+++AL+Y +    AP+ VAKG + IA
Sbjct: 239 HIKGRIRQIRYQRMKKRMMAAVPGASVVITNPTHFSVALKYERG-MQAPICVAKGADAIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  +++PI E   LAR+LF  V ++  IP   Y AVA++I  + + +
Sbjct: 298 FKIREVAKANDVPIVENVPLARALFATVEVDEEIPVEHYHAVAEVIGYVMNLR 350


>gi|149189857|ref|ZP_01868137.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
 gi|148836343|gb|EDL53300.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
          Length = 375

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +  +KTE  S +KI+ A  EG  P ++E +     L   IY        I+   S
Sbjct: 1   MSEQ-SSQDKTEKASPQKIKKARQEGQIPRAKEFTTAVLFLIVAIYFYSQIGR-IWEHIS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T++ LE+   ++  L         L++P  ++ ++  IGS +I    +   
Sbjct: 59  GVFRFNMALTRQDLENPKQMIEQLGQSLGIIIELLLPMFMVIVIAAIGSSMILGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +++P   +++   G+ R++S  +LV  +KS +K+ ++  ++   L  N+  +L      
Sbjct: 119 ANIQPKLSKLNPISGVGRMFSTRSLVELLKSSLKVTVIFALLYTYLDSNFSQLLGMQKLT 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + + L+++ + +    V+DI +   +   +LKM+KQE+K+E K + G P
Sbjct: 179 LSQGITMVMTILFEGLLLMGVALLIFGVIDIPYQRWEHLKQLKMTKQELKEEYKNNEGCP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +A  +A ++ITNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKAVPKADVVITNPTHYAVALKYDTSLSDAPFVVAKGIDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENQVEILHSPPLTRSIYYTTAIEQAIPSQLYIAVAHILTYVMQLK 351


>gi|57168473|ref|ZP_00367607.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228]
 gi|305432892|ref|ZP_07402050.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20]
 gi|57020281|gb|EAL56955.1| flagellar biosynthetic protein FlhB [Campylobacter coli RM2228]
 gi|304444046|gb|EFM36701.1| flagellar biosynthetic protein FlhB [Campylobacter coli JV20]
          Length = 362

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 107/351 (30%), Positives = 187/351 (53%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++   +  LF        +T+
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIVGFVITLFMMGFIGERITN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         L+ P +L  M+ GI   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLILLAPIVLSIMIAGILGNVMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  LV  +K  +K+ +V T+  I L +    +      N
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKLVESVKIVLKVGVVFTVAFIVLLKFMQELPLVERYN 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         +  ++++    + VLDI     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 IIGQLIWLRDRAIILAAIVIIAFLVIAVLDIFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  T+  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTTKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AY++N+ ++E P LAR L+K   IN  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYDNNVVVYENPPLARELYKACDINDLIPREMFKAVAEVLGFVYN 347


>gi|257095372|ref|YP_003169013.1| flagellar biosynthesis protein FlhB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047896|gb|ACV37084.1| flagellar biosynthetic protein FlhB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 379

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 169/352 (48%), Gaps = 3/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   +TE  S++++E A  EG  P SRE   F  ++       F     +  + +
Sbjct: 1   MAE-ESDLERTEPASARRLERAREEGQVPRSREVGAFLILIVAAAAFWFIGPWMVQRMAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                LA        +   ++  L  LS  A   V P  +  ++  + S         + 
Sbjct: 60  VFRRGLA-FDHGLTREPQLVLVRLADLSADALLSVAPLFVALLVAALLSPFFVGSWNFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+   +G+ R+ S + L   +K+  K +LVG +    L      +L   + +
Sbjct: 119 KALQPDLSRLDPLKGLSRLVSWSGLAELVKAVAKALLVGGVAVGVLWSERGDLLAMFAQS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A   +    + I+  +  +  +D+ +   Q++ KLKMS+QE+K E K+  GNP
Sbjct: 179 GQLGLVSAGHLLSFSFLAIVSAMLLIVAIDVPFQLWQYHDKLKMSRQEVKQESKELEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R   R +MM A   A +I+TNPTHYA+AL Y      AP ++AKG   +A
Sbjct: 239 EIKGRIRQLQREAARKRMMAAVPAADVIVTNPTHYAVALAYSSG-MRAPKVLAKGMGEVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R++  E+ IP+ E   LAR+L + V ++  IP   Y AVA+++  +Y  
Sbjct: 298 LKIRQVGAENGIPMIEAAPLARALHRHVELDREIPAGLYAAVAEVLAYVYQL 349


>gi|34496481|ref|NP_900696.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
           12472]
 gi|34102335|gb|AAQ58701.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
           12472]
          Length = 388

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 175/353 (49%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   +TE  S+K++  A  +GN P S+E S F+  +  +  L+       +++  
Sbjct: 1   MAE-DSDLERTEPASAKRLSMAREDGNIPRSKELSTFAVTMTGVALLMAMGGQLGHALGE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  +  Q  +++    +         A   + P      +  + + ++     +  
Sbjct: 60  IMRHLF-TFDQATVQNTEPALIRFKESLFQALGALAPFFGGLALAALLAPMLVGGWNMTF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P+F +++   GIKR++S+N     +K+ +K +L+G I T  +      ++  ++  
Sbjct: 119 KALEPNFGKLNPLPGIKRLFSLNAATEGLKAILKSLLIGGIATWYIWRERGEIIGLLAMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +      + +   ++   +  L  LD+ +    +Y KL+M+K+E+K E K++ G+P
Sbjct: 179 LEAGILKMTDLMIRTFFIVTSALILLVALDVPYQLWSYYKKLRMTKEEVKQEYKEAEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   R +MM+   +A +I+TNPTH+A+AL+Y      AP +VAKG  ++A
Sbjct: 239 EVKGRIRQMQREAARKRMMQEVPKANVIVTNPTHFAVALKYD-DTMRAPQVVAKGSLILA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+     E  +PI   P  AR+L+    +   IP   Y A AQ++  ++  +
Sbjct: 298 EKIIDTGKESRVPIMRSPRFARALYFHAELGQDIPAQLYAAAAQVLAYVFQLR 350


>gi|52842013|ref|YP_095812.1| flagellar biosynthesis protein FlhB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629124|gb|AAU27865.1| flagellar biosynthetic protein FlhB [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 383

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 186/353 (52%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +    KTE PSSK+++++  +G    S++ +    +L   +    F       + S
Sbjct: 2   MADEEQSQEKTEQPSSKRLKESRKKGQVARSKDFNATVILLFTGLGFFIFGKQLSLQIAS 61

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +        +  L   ++ +  L  L+ S    V+P LL+  +  + + L+    V + 
Sbjct: 62  IMQQAF-DFDRDILVTGNNSLENLFQLTKSGLWSVVPLLLVIFILSLLAPLLMGGWVFSG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R+++ +G+KR+ S+   V  +K+F+K +LV +   + L      +L+   A 
Sbjct: 121 QSIQPKFSRLNVLKGLKRMISLKGFVEMLKAFLKFVLVASASILVLRSQVPLLLELGKAP 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + K  ++I   +  +  +D+ +  ++    +KM+KQE+KDE K++ G P
Sbjct: 181 LEIAITSGVMILLKSFVLISASLILIAAIDVPFQLYEHSKSIKMTKQELKDEYKETEGKP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+  +   +   R +MM    +A +I+TNPTHYA+AL Y +    APV++AKG+NL+A
Sbjct: 241 EVKSAIRRAQQETARRRMMSEVPKADVILTNPTHYAVALSYQKKGKKAPVVIAKGKNLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ K+A EH IPI   P+LAR+++    +N+ IP   Y AVAQ++  I+  +
Sbjct: 301 FQISKVAKEHKIPIISVPALARAIYFSTKLNAEIPRGLYVAVAQVLAYIFQLR 353


>gi|115523175|ref|YP_780086.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisA53]
 gi|115517122|gb|ABJ05106.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisA53]
          Length = 358

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 120/352 (34%), Positives = 217/352 (61%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    ++KTE P+ KK+ D++ +G  P+SRE ++FSS++A L+ L F     + ++T 
Sbjct: 1   MSDAPEKESKTEEPTEKKVRDSVEKGQIPVSREVAIFSSMIALLLILSFLTGDKLTALTK 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+   +  +++  +  + L+T + +S++R V+P +++  + G+ S  +Q +P +  
Sbjct: 61  ALAGLIDDPSGVRIKTGADAIELITAIGVSSARFVLPIVVVLSLAGLASSFLQNVPRIVA 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P   R+S+ +G +RI+     V F KS  K I +  ++ I L       ++ +  +
Sbjct: 121 DRIEPKLSRISIAKGWERIFGAQGRVEFAKSVFKFIAISIVVAIVLKAEEAATVNALFGD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++      T  +++  I +    L  LD+ W+   W   L+M+KQE+KDE KQ+ G+P
Sbjct: 181 PTAVPELVLTTAMQLVSAISIATIVLVALDLVWARFHWRQDLRMTKQELKDEFKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +SIAR R R+ M+ A  RAT++I NPTHYA+AL+Y   E+ AP ++AKGQ+LIA
Sbjct: 241 IVKSRMRSIARDRARNAMLAAVPRATLVIANPTHYAIALKYQHGEDPAPTVLAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA ++N+P+ E+  LAR+++    I+  IP  F++ VA++IY ++ +
Sbjct: 301 LKIREIAEQNNVPVVEDRMLARAMYDAAQIDRVIPAEFFRPVAEIIYFLHSR 352


>gi|313905147|ref|ZP_07838516.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6]
 gi|313470050|gb|EFR65383.1| flagellar biosynthetic protein FlhB [Eubacterium cellulosolvens 6]
          Length = 354

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 171/353 (48%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ +D    KTE P+ K+  +A  EGN   S++    + +LA  + L    +    ++ S
Sbjct: 1   MANDD----KTEQPTEKRKREAREEGNVFHSKDIVTVAVLLAGTMILRLRITDIQTTIKS 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L          +S    L+   +L A+   +P  L        +   Q       
Sbjct: 57  MFFEVLNLMKGSTQNMLSR--HLMVSFALDAAVCALPIGLAAAFIEFVAGGAQTRFNFAK 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  KR++   G+KR++S+  +V  +K+  K +++   + + L ++   +   I   
Sbjct: 115 KALKPQAKRMNPLNGLKRMFSLKGVVEALKNIAKTVVLVVFVYLILKDDIVPIAKMIDEP 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                   F  +  +++ I L  + +   D  +  HQ+   L M+KQE+KDE K + GNP
Sbjct: 175 ISQANSQLFSMMFNLVLRICLAFSVIAAFDFMFQKHQYKKSLMMTKQEVKDEYKNTEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R K   R   + +M++    A +II NPTH A+A++Y     +APV++AKG + +A
Sbjct: 235 EIKGRIKKKQREIAQRRMIQQVPSADVIIRNPTHVAVAIKYDPERAEAPVVLAKGVDSVA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ ++  E+ +P  E   LAR+L+    +N  IP  +Y AVA+L+  IY ++
Sbjct: 295 LRIIEVGEENGVPWIENKPLARALYGACELNDQIPSEYYGAVAELLVYIYKQQ 347


>gi|182679720|ref|YP_001833866.1| flagellar biosynthesis protein FlhB [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635603|gb|ACB96377.1| flagellar biosynthetic protein FlhB [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 360

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 132/353 (37%), Positives = 210/353 (59%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D++TE P++KK++DA+ +GN PISRE  +F+S+L+ LI   F     +  + +
Sbjct: 1   MAEKPDQDSQTEEPTAKKMDDAIEQGNLPISREMIIFASMLSLLIVNAFILRNSLADIVT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +  ++ Q  L +    V L   +       ++P +L FM+ GI + + Q    L L
Sbjct: 61  LLKYVFNNSDQIPLRNQLDAVNLFQLILTETGPRLVPIILPFMIAGIAANIGQSKLRLIL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F  +SL  G K+++   NL  F+K+ +K+  V  ++ + L  N   +++ +  +
Sbjct: 121 ERIQPDFGHLSLISGWKKLFGQKNLAEFLKNVIKLSAVALLLFMVLKGNQDKLINAMFLD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +I         ++L +I +    L   D+ W  +QW   L+MSKQEIKDE+KQ  G+P
Sbjct: 181 PSAIPELILSLSMRLLSVICIVTIVLATADLLWVKNQWRRDLRMSKQEIKDELKQMEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R +S+A  RIR  M+    +AT++I NPTH+A+ALRY++ E   PV+VAKG +LIA
Sbjct: 241 LIKARLRSVALDRIRKSMIADVPKATVVIANPTHFAVALRYVREEGGTPVVVAKGTDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  HNIPI E+  LARSL   V +N AIP  FY+A+A++I+ +  KK
Sbjct: 301 LKIREIAEAHNIPIVEDRPLARSLHASVEVNQAIPAEFYRAIAEIIHYLNTKK 353


>gi|78224286|ref|YP_386033.1| flagellar biosynthesis protein FlhB [Geobacter metallireducens
           GS-15]
 gi|78195541|gb|ABB33308.1| Flagellar biosynthetic protein FlhB [Geobacter metallireducens
           GS-15]
          Length = 353

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 186/353 (52%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D   +KTE P+ K++++A  +G  P SR+ +   +++A ++ L         ++ S
Sbjct: 1   MSEED-KHSKTEQPTPKRLDEAKKKG-VPHSRDLTSTVTLIASMVALYTTGGFMFTTLKS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +  S    +L + S +  LL  L L   ++V P +L+ ++ G+ + + Q    +N 
Sbjct: 59  TTSEIFGSMGTFQLTE-SSVEMLLVKLFLVMLQVVGPFMLVVVIVGLFTTVAQVGFSMNA 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    ++++  E   ++++ ++ +   K+ +KI++VG +    + +    ++     +
Sbjct: 118 ERIAFKPEKLNPAENFGKLFNKDSFMEMAKATLKILIVGYMSYKIMRDELDGIIYLTDTD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              IL        K++I     +  L ++D+ +   ++  + KM+KQE+KDE K+S G+P
Sbjct: 178 LSGILELFKHLCFKLVIHTCGVLLILGIVDLVFVKWRFIERQKMTKQEVKDEHKESEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + +   + + ++      A ++ITNPTH+A+AL+Y +    AP ++AKG + +A
Sbjct: 238 KVKGKIRQMQFQQAQRRLRAVIPTADVVITNPTHFAVALKYDRLTMAAPTVLAKGADHMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + ++ +A E+N+ + E   LAR L+ QV     IP   Y AVA+++  +Y  K
Sbjct: 298 QTIKAMARENNVMLVENRFLARELYAQVKEGEEIPEALYAAVAEVLAYVYSLK 350


>gi|157147128|ref|YP_001454447.1| flagellar biosynthesis protein FlhB [Citrobacter koseri ATCC
           BAA-895]
 gi|157084333|gb|ABV14011.1| hypothetical protein CKO_02905 [Citrobacter koseri ATCC BAA-895]
          Length = 377

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 169/349 (48%), Gaps = 3/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
            +  +K+E P+  K+  A  +G+ P S++ ++ + +LA    L  F       +      
Sbjct: 2   SSSGDKSEKPTPGKLRKAREKGDLPRSKDLTMAAGLLASFFTLAAFLPYYQQLIRESFAA 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +   A +  L+D + +   +        R +   L+   +  I + L+    +     +K
Sbjct: 62  VGEMAGR--LDDPTALNQFMLLNVWVVLRFIA-TLIPIPLCCIVASLVPGGWIFTPTKLK 118

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P FK++S   GIKR++S ++     K  +K  ++ T++ + + ++   +L          
Sbjct: 119 PDFKKLSPISGIKRMFSASHYTEVGKMLLKCGIILTVLYMMVHDSMHALLHLQQLYLRQA 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +   F   R V    +  I    +LD+  S   +  K++M+KQE+K+E K + GNP IK 
Sbjct: 179 IGQGFAIFRHVFSYFIAVIVIFALLDVPLSKFMFTKKMRMTKQEVKEEYKNNDGNPQIKG 238

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R + + R     ++      A +IITNPTHYA+AL+Y     +AP +VAKG + +A  +R
Sbjct: 239 RIRQLQRQMAMGQIARTVPTADVIITNPTHYAVALKYDPQRAEAPYIVAKGIDDVALWIR 298

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++   HNI + E P LAR+++    +N  IP   ++A+A ++  +   K
Sbjct: 299 EVGANHNIEVVEFPPLARAVYYTTRVNQQIPTQLFRAIAHVLTYVMQLK 347


>gi|319781693|ref|YP_004141169.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167581|gb|ADV11119.1| flagellar biosynthetic protein FlhB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 360

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 219/353 (62%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    D+KTE  + KKI D + +G  P SRE +LF+S +A L++ +F+    I  +  
Sbjct: 1   MADAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALFASFVAILVFTVFYAKDAIIDLGM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L + L       ++  + ++ L   + L   R V+  ++L  + G+G+ + Q +P    
Sbjct: 61  FLSMFLEKPEAWPMDTETDVIALYKIVLLEVGRAVLSLMVLLTVAGVGASVFQNMPQFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V+P   R+S+ +G  R++ I   V F+KS  K+     +++ +L+E++  +L  +  N
Sbjct: 121 ERVRPQLSRISIAKGWNRLFGIQGWVEFLKSLGKVGFAIVVLSFTLSEDHRKLLAGMITN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +           +L+ I+  +  +  +DI WS   W   L+MSKQE+KDE KQS G+P
Sbjct: 181 PIAFGLVIRGIAVDILVAIVFVMGLIAAVDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+AR R R +MM A  RAT+II NPTH+++AL+Y++ E+ AP+++AKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPMVLAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNIP+FE+ +LARS++KQV +++ IP  FY+AVA+L+  +Y KK
Sbjct: 301 LKIREIAREHNIPVFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353


>gi|209963536|ref|YP_002296451.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
 gi|209957002|gb|ACI97638.1| flagellar biosynthetic protein FlhB [Rhodospirillum centenum SW]
          Length = 373

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 109/349 (31%), Positives = 185/349 (53%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      KTE P+ +K+++A  +G+ P+SRE S    +LA +I +    S     +T 
Sbjct: 1   MSERPEDSQKTEEPTQRKLDEARRKGDVPVSREVSSMMLVLAGVILVGGLGSWMGGHLTD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL  L+ +     L+  +    LL  L+     +++P   + +   + + + Q   V   
Sbjct: 61  DLLPLVENPGDFPLQAPADAFRLLAWLAGEIGLVLLPAAAILLAAVLLAAVGQNGIVFTT 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  +R+S   G++R+ S+  LV F+K   K+  VG  + + L      M      +
Sbjct: 121 ERLKPKLERISPIAGLRRLVSLRTLVEFLKGLAKVAAVGAALLVVLEPELHRMEALALTD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++       + ++L+  L+    + +LD+ W    W  + +M+ QE+K+E +Q+ G+P
Sbjct: 181 VAALPELLTSVLTRLLVATLIASIAIALLDLVWQQFSWRRQQRMTLQELKEEFRQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R   + R R R +M     RAT++ITNPTH+A+ALRY  +E  APV +AKG +L+A
Sbjct: 241 HVKARISQLRRERARQRMFSDIPRATVVITNPTHFAVALRYDLSEAPAPVCLAKGMDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +++R+ A  H +PI E P LAR+L K V I   + P  Y AVA++I  +
Sbjct: 301 RRIREAAMGHKVPIVENPPLARALHKSVEIGEEVQPEHYMAVAEVISYV 349


>gi|187926251|ref|YP_001892596.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J]
 gi|241665739|ref|YP_002984098.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D]
 gi|187728005|gb|ACD29169.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12J]
 gi|240867766|gb|ACS65426.1| flagellar biosynthetic protein FlhB [Ralstonia pickettii 12D]
          Length = 387

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 173/353 (49%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S +++E A  EG+ P SRE + F+        L       + + +S
Sbjct: 1   MSE-ESDLEKTEPASPRRLEQAREEGDVPRSRELASFALTAVSAGGLWVMGDSIVRAASS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L               ++       A  + + GL+L ++    S L      ++ 
Sbjct: 60  FLARCLEFHRYNYTSGQDQWNYVTGQFMPLA--MTLGGLMLMLVIAALSPLALTRGAISF 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+   +G+ R++S+  L+   +  +K+ L+  +  + +      +++    +
Sbjct: 118 KPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIELPQQD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +           + +   +  +  +D+  S  Q+  K +M+K+E++ E ++S G+P
Sbjct: 178 LGVAMRDTLHVAGVAFLCMAAVMMLVAAVDVPLSLWQYARKHRMTKEEVRKEHRESEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG +++A
Sbjct: 238 HVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEKEGGAPRVLAKGADMVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++  EH IPI E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 298 AKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAEVLAYVYQLR 350


>gi|258592485|emb|CBE68794.1| Flagellar biosynthetic protein FlhB [NC10 bacterium 'Dutch
           sediment']
          Length = 359

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 180/350 (51%), Gaps = 2/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D   ++TE+ +SK+ ++A   G    S++ +    +L+ ++         +  +   + 
Sbjct: 3   SDDAKDRTESATSKRRQEARGRGQVARSQDLNAALLMLSGILTFYVLGGSLVADLVGLMR 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
                    +L  +  +   +   SL  + ++ P +   ++    S + Q   + N + +
Sbjct: 63  FYFGQGLGGEL-TVPRVQQTMFSASLRMATMLAPLMGTLVVVAYVSSVAQVGFLTNSSAL 121

Query: 124 KPSFKRVSLREGIKRIYSI-NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
              ++R++   G KR+++    L+  +KS +K  LVG ++  +L+ +   +   +   P 
Sbjct: 122 SLKWERLNPATGFKRLFAPGRTLIETIKSILKFALVGFLVYRTLSGHLSEIPLLMDMTPM 181

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             L        ++ + + L   TL  LD GW   Q+   ++M+K+E+K+E+KQ+ G+P +
Sbjct: 182 QTLTWLGQICFQLALRVGLAFLTLAALDYGWQRWQFEKSIRMTKEEVKEEMKQTEGDPAV 241

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R K + R    H+MM    +A ++I NP H+A+A+RY  T  +AP +VAKG  L+A++
Sbjct: 242 KGRIKGLQRQAAMHRMMTDVPKADVVIVNPIHFAVAMRYDSTSMEAPTVVAKGARLVAER 301

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +  +A  H IPI E+P LAR+L+K V I   IP   YKAVA+++  +Y  
Sbjct: 302 IVAMAKAHGIPIVEDPPLARALYKAVSIGRPIPIHLYKAVAEILAYVYQM 351


>gi|15895417|ref|NP_348766.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           acetobutylicum ATCC 824]
 gi|15025140|gb|AAK80106.1|AE007715_11 FliR/FlhB fusion protein [Clostridium acetobutylicum ATCC 824]
 gi|325509563|gb|ADZ21199.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           acetobutylicum EA 2018]
          Length = 610

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 176/347 (50%), Gaps = 1/347 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE  + K+  +A  +G    S+E  L ++++A    +          +   +   
Sbjct: 260 ADSDKTEEATPKRKSEARKKGQVARSKEVPLAATLVAITFIISLGGQTFFNGLGVMMQTF 319

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     L ++  +  ++  + L+A + +    +  M+ GI + + Q   +     +KP
Sbjct: 320 FQSYIHSNLTEL-DLRRIIIFVILNAGKFIFMFGVPVMVVGIVANIAQTGWITTTEPIKP 378

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             K+++   G KRI+S+  +VN +K  V + ++  +    L  NY  + +  +     I 
Sbjct: 379 DLKKLNPISGFKRIFSMTTIVNLLKDLVVVAVLSVVGYKFLMSNYGDIANLNNLMVQYIP 438

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 V  +  ++ L +  +   D  ++ +++   +KM+K E+K+E KQ+ G+P IK +
Sbjct: 439 QAYLSYVISIFRIVALIMIVIAGFDFVYNRYKYKKDMKMTKHEVKEEFKQAEGDPEIKGK 498

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   R  +   M+     AT++ITNPTH ++A++Y +  + AP +VAKG +  A ++++
Sbjct: 499 RRQRMREIVTRTMLSKVPDATVVITNPTHISVAIKYERGVDKAPTVVAKGADRTALRIKE 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           IA E+N+PI E   LAR +FK+V ++  IP   Y+ VA+++  +Y  
Sbjct: 559 IAKENNVPIMENKPLARLIFKKVEVDEQIPAEMYQTVAEILALVYKL 605


>gi|302384124|ref|YP_003819947.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194752|gb|ADL02324.1| flagellar biosynthetic protein FlhB [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 362

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 105/354 (29%), Positives = 190/354 (53%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+  P++KTE  S +K+E+A  +G+   S + +   S+L     L+        ++  
Sbjct: 1   MAEDADPESKTEEASPQKLEEARKKGDVAKSADVAPALSLLCVTGVLIMGGGYFATNMAQ 60

Query: 61  DLHVLLASA-TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
                +A+        +    V +   +    +  +   +L  ++ G+G  + Q   V++
Sbjct: 61  GFLPFIAAPHAMLGGLEAGGGVEIGARVLWVVAPFLGAVMLAAILGGVGGNVAQSGLVIS 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP + +VS   G KRI+  + L+ F ++ +K++ VG I  + L  +        + 
Sbjct: 121 AEKMKPKWSKVSPMAGFKRIFGPDGLMQFAQTLLKLVAVGVICWMVLKPHARQFETMAAM 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P +IL  A   +  ++   L+F+A     D  W   ++  +++MSK+E+K+E KQS G+
Sbjct: 181 SPLTILPLARDLMIALMSSALVFLALTAGGDFVWQKMRFAKRMRMSKEELKEEYKQSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK + K I   R R +MM+   +AT+I+TNPTHY++ALRY    + APV VAKG + +
Sbjct: 241 PHIKAKLKQIRMQRSRQRMMQNVPKATVIVTNPTHYSVALRYEAG-DAAPVCVAKGVDAV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R++A EH++PI E   LAR+L+  V I+  IP   ++A A++I  +  K+
Sbjct: 300 AMRIREVAREHDVPIVENVPLARALYAAVDIDETIPREHFEAAARVIGFVMKKR 353


>gi|150020741|ref|YP_001306095.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis
           BI429]
 gi|149793262|gb|ABR30710.1| flagellar biosynthetic protein FlhB [Thermosipho melanesiensis
           BI429]
          Length = 377

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 187/348 (53%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE  + ++ + A  EG  PISRE +   + LA ++   F     I  + S +   
Sbjct: 29  ADPDKTEKATPRRRQKAREEGQVPISRELTSGFTFLAAVLGFAFLGRGIILGLESAV-AF 87

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            A        +I+ +     +        ++  + + M+ GI    +Q   +     +K 
Sbjct: 88  FAELPSYDTININDLGIYAFNAFKGLIIDLVIFVGIIMVTGIAVGSLQTKFLFTFKSLKL 147

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F +++   G+KR++S+ +L   +KS +K+++VG +  + +  N+  ML  I  +     
Sbjct: 148 DFSKINPINGLKRMFSLRSLFELLKSILKLVIVGYVGYLVIKSNWNKMLLAIDKSVKDGS 207

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              +    ++LI   + +  +++ D  +S +++   ++M+KQE+K+E K+  GNP IK +
Sbjct: 208 LLIWDITFELLIKCGIALFIVSIADYFFSRYEYEKNIRMTKQEVKEEFKEVEGNPEIKRK 267

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ I      H+MM+    AT++ITNPTH+A+A++Y   E + P++VAKG + +A+K++K
Sbjct: 268 QREIMMQYSMHRMMQEVPEATVVITNPTHFAVAIKYEVDEMEVPIVVAKGMDNLAEKIKK 327

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E+N+PI   P LAR L+  V +   IP  FY+AVA+++  +Y  K
Sbjct: 328 VARENNVPILRNPKLARELYFNVDVGDEIPEKFYRAVAEVLAYVYSLK 375


>gi|260779326|ref|ZP_05888218.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605490|gb|EEX31785.1| flagellar biosynthesis protein FlhB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 375

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +  +KTE  S +KI+ A  EG  P ++E +  +  LA  +Y      P I+   +
Sbjct: 1   MSEQ-SSQDKTEKASPQKIKKARQEGQIPRAKEFTTAAIFLAVAVYFYSQL-PVIWESIA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T++ L +   +V  L H       L++P  ++ +   + S ++    +  L
Sbjct: 59  GIFRFNMTLTKQDLANPKQMVEQLGHSLGMIITLLLPMFVVIIAVTLASTMVLGGWMFRL 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +V P   +++   GIKR++S  +LV  +KS +K++++  ++   L  +   +L     +
Sbjct: 119 ANVFPKLSKLNPLSGIKRMFSTRSLVELLKSTLKVLVIFGVLYAYLDNHLQPLLGMQRLS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + +    +   L+M+   +    V+DI +   +   +LKM+KQE+K+E K + G P
Sbjct: 179 LEQGVVNVMQILFDGLLMMGFALLLFGVIDIPYQRWEHMKELKMTKQELKEEYKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTHYA+A++Y    +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVAMKYDPALSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  A+P   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENQVEIINSPPLTRSIYYTTAIEQAVPSQLYIAVAHILTYVMQLK 351


>gi|239834455|ref|ZP_04682783.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG
           3301]
 gi|239822518|gb|EEQ94087.1| flagellar biosynthetic protein FlhB [Ochrobactrum intermedium LMG
           3301]
          Length = 356

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 120/346 (34%), Positives = 199/346 (57%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL +GN P SRE  + + I + LI  +F   P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L   L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+  +  V F+KS  K +    I+ +          D ++++
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRSGQVEFLKSLAKFLAASVIVFVVFFSGNSLFTDAVASD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       + ++L+  +L I  +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+     AT+I+ NPTH+++ALRY   ++ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R+IA +H+IPIFE+  LAR+L+KQV ++  I P FYKAVA+LI
Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELI 346


>gi|57237386|ref|YP_178399.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni RM1221]
 gi|86149065|ref|ZP_01067297.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597389|ref|ZP_01100624.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|205356015|ref|ZP_03222783.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561994|ref|YP_002343773.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|57166190|gb|AAW34969.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni RM1221]
 gi|85840423|gb|EAQ57680.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190450|gb|EAQ94424.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359700|emb|CAL34486.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|205346139|gb|EDZ32774.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|315928679|gb|EFV07962.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 362

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY   +  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTGKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|71906378|ref|YP_283965.1| flagellar biosynthesis protein FlhB [Dechloromonas aromatica RCB]
 gi|71845999|gb|AAZ45495.1| Flagellar biosynthetic protein FlhB [Dechloromonas aromatica RCB]
          Length = 379

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 106/352 (30%), Positives = 180/352 (51%), Gaps = 3/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+ ++IE A  +G  P SRE + F  +           S  +     
Sbjct: 3   MAE-DSDLEKTEEPTGRRIEQAREQGQVPHSRELATFLVLAVAGATFWMMGSWFMQRSLV 61

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       ++  + D   ++  L  +S  A  +  P L L ++  I         V + 
Sbjct: 62  IMQKGFFVESRY-MRDPDLMLPRLAEISGDALFVFSPLLGLLLLAAILPPFFLNAWVFSP 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G  R++S N+L+   K+ +K +LVG +  + + +    +   +   
Sbjct: 121 KALVPDLNRLNPLSGFGRMFSWNSLMELAKAVLKAVLVGGVAAMLIWKERDEIFGLLGEP 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L HA   V    ++++  +  + V D+ +   Q++ KLKMSK+E+K E+K+  G+P
Sbjct: 181 LEVGLAHAGHLVSFSFLILVATLVLVVVADVPFQLWQYFDKLKMSKEEVKQEMKEMMGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+     R +MM A  +A +++TNPTHYA+AL Y QT   AP +VAKG   +A
Sbjct: 241 HVKGRIRSLQMQAARKRMMSAVPKANVVVTNPTHYAVALAY-QTGMGAPKVVAKGVGAVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+++IA EH +PI E P LAR+L+K   +++ IP   Y AVA+++  IY  
Sbjct: 300 LKIKEIANEHAVPIMEAPPLARALYKHSELDTEIPSALYNAVAEVLAYIYQL 351


>gi|157373227|ref|YP_001471827.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
 gi|157315601|gb|ABV34699.1| flagellar biosynthetic protein FlhB [Shewanella sediminis HAW-EB3]
          Length = 376

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +KTE  + +K++ A ++G  P S++ +  + I+ C + L    +    +  +
Sbjct: 1   MS-KDTGQSKTEKATPQKLKKAQDQGQVPRSKDLAATALIIGCSLMLTA-SADWFATRVA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T+ +L++   ++  L    +    ++ P ++L  +  + +  +   PV N 
Sbjct: 59  RVAQYNMSLTKAELDEPGMMMSHLGTSLVEILNILGPIIVLIAVLAMVAGSMPGGPVFNF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    GI R++S+ +LV  +KS +KI+L+  I+   L  N  ++L +    
Sbjct: 119 KNAAFKYSRIDPIAGIGRMFSMKSLVELVKSILKIVLLIGIMFTFLEHNLQSLLGYSQLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   ++ + + +  +T +D+ + Y   +++LKMS+Q++KDE KQ  G P
Sbjct: 179 IDEAVRKGIDILSLGMLYLGIGMLVITFIDVPYQYWHHHNELKMSRQDVKDEHKQQEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + +   R +   A  +A +++ NP HYA+AL+Y   + DAP ++ KG + +A
Sbjct: 239 EIKAKIRQLQQRIGRSRADVAIPQADVLLVNPNHYAVALKYDVEKADAPYVLTKGTDELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR+IA  H++ + E P LAR+++    +   IP   + A+A ++  +   K
Sbjct: 299 LYMRQIAKHHDVEVIELPPLARAIYYSTQVEQQIPAALFIAIAHVLSYVLQIK 351


>gi|296135634|ref|YP_003642876.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12]
 gi|295795756|gb|ADG30546.1| flagellar biosynthetic protein FlhB [Thiomonas intermedia K12]
          Length = 373

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K    S K+ + A  +G    SR+ +  S +L  +  +++      Y +  
Sbjct: 1   MAE-DSAQEKELPASQKRKQQAREKGQVARSRDLTS-SLLLLGMAAVVYTAGGWFYDMGR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + +    +D + ++     + +    ++ P L L  +      +     V + 
Sbjct: 59  ELLQTGLTVSASASQDPAAMLQAAGRVLVLGLIVLAPVLALTFLASAAGGVAMGGWVFST 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R+   +GI R++SI  L    K+ +K I++  I  I +      +L  +   
Sbjct: 119 EALAPDFSRLDPVKGIGRMFSITGLGELGKALLKAIVIAVIAGIVIWNERGALLGLLQVE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P            +  + +      +  +D+ W   Q   KLKMS+Q+++DE+++S GNP
Sbjct: 179 PQLAQMQLGQITARAFLWMASGTLLVAAVDVPWQLFQMNKKLKMSRQDLQDEMRESEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + + R R R +MM A  +A +++TNPTHYA+AL Y + +N APV++A G + +A
Sbjct: 239 QIKQKMRELQRERARKRMMAAVPKADVVVTNPTHYAVALAYKEGKNRAPVVLALGADRVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A EHN+P+ E P LAR+LF    +   IP   Y AVA L+  ++  +
Sbjct: 299 ARIREVAAEHNVPVIEAPPLARALFHHAELEQEIPVALYNAVALLLAYVFQLR 351


>gi|153952141|ref|YP_001398614.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939587|gb|ABS44328.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 362

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIIIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVAQLAWLRDRSIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVADADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|302037621|ref|YP_003797943.1| flagellar biosynthetic protein FlhB [Candidatus Nitrospira
           defluvii]
 gi|300605685|emb|CBK42018.1| Flagellar biosynthetic protein FlhB, export component [Candidatus
           Nitrospira defluvii]
          Length = 360

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 185/356 (51%), Gaps = 5/356 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+  N+TE  + K+  DA  +G   +SR+A++   +L  L  L +     +  +  
Sbjct: 1   MA--DSGQNRTEQATPKRKADARAKGQVALSRDAAMAVGLLGSLGALYWMTPGILNGLRE 58

Query: 61  DLHVLLASATQRKLE---DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L + L+ + +   +    + H+  +L  + +    ++ P +    + G+G+ LIQ   +
Sbjct: 59  SLQLWLSKSMEESTQRTLSLDHLHLILRQVGVDVFVMLGPVIAGIAVVGVGANLIQTGFL 118

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
              + ++  F R+S   G  R++S+ +    +KS++KI  +G +  +++ ++        
Sbjct: 119 WKRDALQLEFSRISPMAGFSRLFSVRSFSELVKSWLKIFAIGGVGYLTIKQDMVLFSPLT 178

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                ++L    +   K  +M+      +  LD G+   +W   L+MS+ EIK+E + + 
Sbjct: 179 QFGMETLLPTVGWATFKAALMMGGAALVIGGLDYGFQRFEWERDLRMSRDEIKEESRAAE 238

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K + +S  R   R +MM A  +A +IITNPTH A+AL+Y      AP++VAKG  
Sbjct: 239 GDPGLKAKIRSTQREMSRKRMMAAVPKADVIITNPTHLAVALKYDSKAMGAPIVVAKGAG 298

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A+K+R+I  +H + I E   +AR+LFK V +   +P   Y+AVA+++  +Y  +
Sbjct: 299 YVAEKIREIGRQHGVMIVENKLVARTLFKLVEVGREVPEDLYRAVAEILAFVYRVR 354


>gi|56964016|ref|YP_175747.1| flagellar biosynthesis protein FlhB [Bacillus clausii KSM-K16]
 gi|56910259|dbj|BAD64786.1| flagellar biosynthetic protein FlhB [Bacillus clausii KSM-K16]
          Length = 362

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 173/346 (50%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + KK +D   +G  P S++ +    + A  + L  F  P +++   ++   + 
Sbjct: 13  EEKTEKATPKKRQDTRKKGQVPKSQDVNTAFMLFAAFLLLSLFAGPRLFAALKEMMADVF 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                      +I  L   L++      +P + L ++ G  +  +Q   +     +K   
Sbjct: 73  QRFLSLPLTAENIAALFNELTIEMGMAALPIMALTVLAGAFASFVQVGSLFTPEPMKLKL 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +++   +G KRI+S   LV   KS +KI+ +G  +   +  N   +L     +       
Sbjct: 133 EKLDPIKGAKRIFSTRALVELGKSMLKIVFIGAAVAFVIYANIGDVLLLSQKSVEVGAAS 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  + +   + +  L + D  +  +    +++MSK++I+DE K   G+P I+ R+K
Sbjct: 193 IGHLTVTMGLFAAVLLMVLAIPDYLYQRYDHEKQIRMSKKDIRDEHKTMEGDPKIRARRK 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
                   +++M+   +A ++ITNPTHYA+ALRY Q + DAP++VAKG + +A++++ +A
Sbjct: 253 QRQLEMSMNRIMQEVPKADVVITNPTHYAVALRYDQEQADAPIVVAKGVDYMAERIKTVA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +H+IP+ E  +LAR+++  V +   I    ++AVA+++  +Y  K
Sbjct: 313 KKHDIPLVENVALARAMYASVELMQPIHEDMFQAVAEVLAYVYRLK 358


>gi|269963167|ref|ZP_06177502.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832131|gb|EEZ86255.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 350

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + ILA LI +LF F+    S  S L +L 
Sbjct: 2   SGEKTELPTPKKLRDARQKGQVAKSQEIVSSALILA-LITVLFAFADYYMSHISALLLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   ++ +   ++     L+ P +L+  +  I + + Q   + +   VKP 
Sbjct: 61  SELAYQGFQD--ALLDVAIAIAKEMVYLLAPIILVAALIAIMANMGQFGFLFSGESVKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T+L   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLKGNLNTLLQIPTCGLECVPT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +++++I+  +    +   D  +       +LKM+K E+K E K+  G+P IK+++
Sbjct: 179 ITGVLIKQLMIISAVGFIVIAAADFAYQKFHHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +AK+M  I
Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  IP+ ++  LAR+L+    +N  IP    +A A+++  +
Sbjct: 299 AKEEGIPVMQKVPLARALYSDGQLNQYIPGDLIEATAEILRWV 341


>gi|148926430|ref|ZP_01810113.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844593|gb|EDK21699.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 362

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIIPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVTQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|309778952|ref|ZP_07673722.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA]
 gi|308922299|gb|EFP67926.1| flagellar biosynthetic protein FlhB [Ralstonia sp. 5_7_47FAA]
          Length = 387

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 173/353 (49%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S +++E A  EG+ P SRE + F+        L       + + ++
Sbjct: 1   MSE-ESDLEKTEPASPRRLEQAREEGDVPRSRELASFALTAVSAGGLWVMGDSIVRAASA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L               ++       A  + + GL+L ++    S L      ++ 
Sbjct: 60  FLARCLEFHRYNYTSGQDQWNYVTGQFMPLA--MALGGLMLMLVIAALSPLALTRGAISF 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+   +G+ R++S+  L+   +  +K+ L+  +  + +      +++    +
Sbjct: 118 KPLSPDISRLFKLQGLTRMFSLEGLMELPRLLIKLFLIAGVGWLLVRYYRGDLIELPQQD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +           + +   +  +  +D+  S  Q+  K +M+K+E++ E ++S G+P
Sbjct: 178 LGVAMRDTLHVAGVAFLCMAAVMMLVAAVDVPLSLWQYARKHRMTKEEVRKEHRESEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG +++A
Sbjct: 238 HVKGRIRNLQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEKEGGAPRVLAKGADMVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++  EH IPI E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 298 AKIRELGTEHKIPILEAPPLARALYRHTEIGHQIPEALYAAVAEVLAYVYQLR 350


>gi|149191144|ref|ZP_01869402.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
 gi|148834982|gb|EDL51961.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
          Length = 382

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 90/356 (25%), Positives = 180/356 (50%), Gaps = 7/356 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+    +K+E PS  K+  A  EG  P ++E     ++++ + Y +      I  +  
Sbjct: 1   MSEHQDSGDKSEQPSQHKLSKARREGQVPRAKEFVSSVTLISVVAYYVL----NIDMIKQ 56

Query: 61  DLHVLLASATQRKLEDISHIV---FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
               L   + Q   + ISH +    LL     S   L  P L+  ++  I    +    +
Sbjct: 57  TFIELFLVSFQFDTQTISHWMTSVELLGTALFSMVMLFFPLLIYQIIAAIFGSTLLGGWI 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L+ + + P  +++S  +GIKRI+S  ++V   K+  K+ L  +++   ++     + + +
Sbjct: 117 LSPSLLTPKLEKISPIKGIKRIFSTQSVVELFKNVFKVTLFFSLLYWVISSYISVITNLV 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           SA+  ++++       + L  +LL +    + D  +  H++  ++KM+KQE+KDE K+  
Sbjct: 177 SAHFDTVVFTVATITIEYLGYLLLIVLIFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQE 236

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P +K R + I     +    E   +A +++TNPT YA+AL Y  T+ +AP +VAKG++
Sbjct: 237 GRPEVKARIRQIQTQNAKRGANERVPKANVVLTNPTQYAVALIYDLTQAEAPFVVAKGKD 296

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A  +R++A +H++ + E   L R+++    ++  +P   + A+A ++  +   K
Sbjct: 297 EVAVYIRELAAKHSVEVVESAELTRAIYNTTQVDQMVPNQLFVAIAHILTYVNQLK 352


>gi|328468938|gb|EGF39898.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus 10329]
          Length = 351

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KK+ DA  +G    S+E    + ILA LI +LF F+    S  S L +L 
Sbjct: 2   SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   ++ +   ++   + L+ P +L+  +  I S + Q   + +   +KP 
Sbjct: 61  SELAYQGFQD--ALIDVAIAIAKEMAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T++   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK+++
Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  +P+ ++  LAR+L+    ++  IP    +A A+++  +
Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWL 341


>gi|89895721|ref|YP_519208.1| hypothetical protein DSY2975 [Desulfitobacterium hafniense Y51]
 gi|89335169|dbj|BAE84764.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 354

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 171/353 (48%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ N +   KT   + ++ ++A  +G    S E      +++ +  L F+    +  V+ 
Sbjct: 1   MAGNMS--EKTFQATPRRRQEARKKGQVFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +   + +        +  L+  L     ++V P  ++  +   G+  +Q   +  L
Sbjct: 59  IFPYVYGLSAEW---TARSVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTL 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   R+S+  G KR++ +   V  +KS +K+  +G  +  ++ +N+          
Sbjct: 116 EPLKPQLSRISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLT 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + ++   I L    +  +D  + +  +   LKMS +E+K E KQ+ GNP
Sbjct: 176 VGQGAMFIGGLIVELGWKIALSFFVIAAIDFLYQWWDYEKNLKMSHEELKQEYKQTEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   K   R+    +MM+    A +++TNPTHYA+ALRY   EN APV+VAKG + IA
Sbjct: 236 QLKGEIKRKQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++++A ++ I   E   LAR+LF Q  I  A+P   YKAVA+++  +Y  K
Sbjct: 296 QRIKQLAKDYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 348


>gi|284925607|gb|ADC27959.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 362

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMLSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|325109030|ref|YP_004270098.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM
           5305]
 gi|324969298|gb|ADY60076.1| flagellar biosynthetic protein FlhB [Planctomyces brasiliensis DSM
           5305]
          Length = 357

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 173/352 (49%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D    K+E P+ ++  +A N+GN   S + +  + +LA    L+F           
Sbjct: 1   MADDD-QGEKSEDPTDQRRREARNQGNVAKSVDVNAAAIMLAATGGLMFLGPDIAKGFAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L      +L D   ++    ++  + +   +P +LL ++  + + L Q   +   
Sbjct: 60  LLRRYLEGPPVLEL-DRFMVMREFWNIFQAVAGFALPFMLLMLLTAVVANLAQIGVLFTT 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   ++R++   G +RI+S+     F  S  KI+ +  +    L      +     + 
Sbjct: 119 EPLGFKWQRINPVSGFQRIFSVAAFAKFGTSVGKIVAMAGVACWFLYLKLPALQGMGQSE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  IL      + ++   + L +  + +LD  +   +    LKMSKQEI+DE+K   G+P
Sbjct: 179 PSVILGTIGSVILELAFQLALAMLIIALLDYSFQKWKHEQDLKMSKQEIRDEMKNMDGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ R+K   R     K + A   A +++TNPTH ++AL+Y  T++ APV+VAKG   IA
Sbjct: 239 HIRQRRKEAHRKLAEAKELNAVRDADVVLTNPTHLSVALKYDSTKHPAPVVVAKGAGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++R+IA E+N+PI E   LAR+L++ V +   IP   Y+   +++  +Y  
Sbjct: 299 MRIREIARENNVPIIERKPLARALYRDVKVGHPIPAEMYEVFVEIMAYVYRL 350


>gi|291558215|emb|CBL35332.1| flagellar biosynthetic protein FlhB [Eubacterium siraeum V10Sc8a]
          Length = 353

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 179/346 (51%), Gaps = 2/346 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + KK +D   +G    S+E ++   ++    +L  F +     + + +   
Sbjct: 2   AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIFGNYMFQMLLNFMEQS 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           ++S  +     +   + +   +++     V P L + ++  +   ++Q   + ++  +KP
Sbjct: 62  MSSIDKTG-NTVEFAMSVFWKVAIICVCTVGPILAVGVVLSVLPVIVQTKGLFSMEAMKP 120

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F R++   GIKR++S+  LV  +K  ++II+V  I+   + +        I  +   I+
Sbjct: 121 KFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIKIV 180

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   T   +++ I + +  +   D  + +  +  KLKMSKQE+KDE KQ  G+P IK +
Sbjct: 181 AYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIKGK 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMR 304
            K   +   + +MM+    A +++ NPTHYA+AL+Y +     APV+VAKG + +A ++ 
Sbjct: 241 IKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALRIV 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +A EHN+ I E   LAR L++ V I   IP  FY AVA+++  +Y
Sbjct: 301 AVAEEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVY 346


>gi|300694355|ref|YP_003750328.1| flagellar export pore protein [Ralstonia solanacearum PSI07]
 gi|299076392|emb|CBJ35708.1| flagellar export pore protein [Ralstonia solanacearum PSI07]
          Length = 389

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 173/355 (48%), Gaps = 7/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE+ S +++E A  EG+ P SRE   F  +      L         S+  
Sbjct: 1   MSE-DSDLEKTESASPRRLEQAREEGDVPQSRELVSFVLLAVAAGGLWVMG----ESIVR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118
                LA   +    D +       ++      L  V+ GL+L ++    S L      +
Sbjct: 56  TASSFLARCLEFHRYDYTRAQAQWQYVGAQFGPLAMVLAGLMLMLVLASLSPLALTRGAI 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P   R+    G+KR++S+  L+   +   K+ LVG +    +       ++   
Sbjct: 116 SFKPLTPDISRLIGLHGLKRMFSVQGLLELPRLLAKLALVGGVGWWLILHYRDAFVELPR 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  + +           + +   +  +  +D+  +  Q+  K +M+K+E++ E ++S G
Sbjct: 176 GDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG +L
Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADL 295

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 296 VAAKIRELGAEHRIPVLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350


>gi|86153620|ref|ZP_01071823.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|157414632|ref|YP_001481888.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|4105266|gb|AAD02331.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni]
 gi|85842581|gb|EAQ59793.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|157385596|gb|ABV51911.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747272|gb|ADN90542.1| Flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931587|gb|EFV10553.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 362

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|163802012|ref|ZP_02195908.1| translocation protein in type III secretion [Vibrio sp. AND4]
 gi|159174153|gb|EDP58961.1| translocation protein in type III secretion [Vibrio sp. AND4]
          Length = 350

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + ILA LI +LF F+    S  S L +L 
Sbjct: 2   SGEKTELPTPKKLRDARKKGQVAKSQEVVSSALILA-LIAVLFAFADYYMSHISALLLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +   D   ++ +   ++     L+ P L++  +  I S + Q   + +   VKP 
Sbjct: 61  SKLAYQGFHD--ALIDVAIAIAEEIIYLLAPILIVAALVAIMSNMAQFGLLFSGESVKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+V+  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T+L   +     +  
Sbjct: 119 IKKVNPAEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPA 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V++++I+  +    +  +D  +       +LKMSK E+K E K+  G+P IK+++
Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAVDYAYQKFNHTKQLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        +   R+ +++TNPTH A+ L Y + E   P++  K  + +AK+M  I
Sbjct: 239 RQLHQEMQSSNQRDNVKRSNVLVTNPTHIAIGLYYKKDETPLPIITLKETDAMAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  IP+ ++  LAR+L+    ++  IP    ++ A+++  +
Sbjct: 299 AREEGIPVMQKVPLARALYADGQLDQYIPGELIESTAEILRWV 341


>gi|28898449|ref|NP_798054.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260365107|ref|ZP_05777678.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus K5030]
 gi|260876610|ref|ZP_05888965.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AN-5034]
 gi|260895029|ref|ZP_05903525.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus Peru-466]
 gi|260900960|ref|ZP_05909355.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ4037]
 gi|28806666|dbj|BAC59938.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085922|gb|EFO35617.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus Peru-466]
 gi|308093607|gb|EFO43302.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AN-5034]
 gi|308110774|gb|EFO48314.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ4037]
 gi|308111655|gb|EFO49195.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus K5030]
          Length = 351

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KK+ DA  +G    S+E    + ILA LI +LF F+    S  S L +L 
Sbjct: 2   SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   ++ +   ++   + L+ P +L+  +  I S + Q   + +   +KP 
Sbjct: 61  SELAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T++   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK+++
Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAMAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  +P+ ++  LAR+L+    ++  IP    +A A+++  +
Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWL 341


>gi|118475475|ref|YP_891544.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414701|gb|ABK83121.1| flagellar biosynthetic protein FlhB [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 357

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 99/350 (28%), Positives = 180/350 (51%), Gaps = 5/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     K E P+ KK+EDA N+GN   S++ S F ++L     L+         + +
Sbjct: 1   MADD---QEKIEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVN 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                          ++     +  H  L    +++P  +  M+ GI S ++Q   +  +
Sbjct: 58  LYLYYQGLIGVEITREL--FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTV 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F ++   +GI  ++S+  L++ +K  +K+  V  +      +    +   I  +
Sbjct: 116 EPIMPNFSKIDPIKGIANLFSLKKLIDAVKIILKVSAVFGVAFYFFLQFVKELPHTIFFS 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L      +  +  ++LL    + + D+    +Q++  L+MSKQE+KDE KQ  G+P
Sbjct: 176 MFNQLLWLKEKMLILAGVMLLLFLIIAIADVFIVRYQYFKGLRMSKQEVKDEFKQMEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +MM+    A ++ITNPTHYA+ALRY + +  APV++AKG + +A
Sbjct: 236 KVKGRIRQLQMQAARKRMMQNIPTADVVITNPTHYAVALRYDKEKEKAPVVLAKGVDHLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++RKIA E+ I I E P LAR L+K   I+  IP   ++AVA+++  +Y
Sbjct: 296 LRIRKIATENGIQIVENPPLARELYKLCDIDDQIPGNLFQAVAEVLSFVY 345


>gi|90422606|ref|YP_530976.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisB18]
 gi|90104620|gb|ABD86657.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisB18]
          Length = 358

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 215/353 (60%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    ++KTE P+ KKI D++ +G  P+SREAS+FSS++A L+ L F     + ++T+
Sbjct: 1   MSEGPDKESKTEEPTEKKIRDSVEKGKIPVSREASIFSSMIALLLILSFLAVDNVRNLTA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  ++   +  ++   +     L  +  SA+ LV+P +++  + G+ + ++Q +P++  
Sbjct: 61  TLARMIDDPSGIRIRTAADATEFLVAVGASAAGLVLPIVIVLAVAGVLASVLQNVPLIVF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+S+ +G  RI+     V F KS  K I +  ++TI L     T ++ + ++
Sbjct: 121 ERIAPDASRISIAKGWGRIFGGQGRVEFAKSVFKFIAISLVVTIVLRAEEATAVNALFSD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++         +++  I +    L  LD+ W+   W   L+M+KQE+KDE +Q+ G+P
Sbjct: 181 PTAVPELILAAAMRLVSAISIATIVLVALDLLWARFHWRRDLRMTKQELKDEFRQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +SIAR R R +M+ A  RAT++I NPTHYA+AL+Y   E+ AP ++AKGQ+LIA
Sbjct: 241 IVKSRLRSIARDRARKRMLAAVPRATLVIANPTHYAIALKYQHGEDAAPTVLAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  +N+P+ E+  LARS++    I+  IP  F++ VA++IY ++ ++
Sbjct: 301 LKIREIAERNNVPVVEDRMLARSMYDAAEIDRVIPAEFFRPVAEIIYFLHSRR 353


>gi|188574349|ref|YP_001911278.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|50428352|dbj|BAD29989.1| HrcU [Xanthomonas oryzae pv. oryzae]
 gi|188518801|gb|ACD56746.1| HrcU [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 359

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +       +  + +   +  
Sbjct: 2   SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L   ++ G+     Q     +L  V P 
Sbjct: 62  D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  I  
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDISQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     +  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  AIP   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341


>gi|153836170|ref|ZP_01988837.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ3810]
 gi|149750445|gb|EDM61190.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus AQ3810]
          Length = 351

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 178/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KK+ DA  +G    S+E    + ILA LI +LF F+    S  S L +L 
Sbjct: 2   SGEKTEQPTAKKLRDARKKGQVAKSQEIVSSALILA-LIAVLFAFADYYMSHISALLLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   ++ +   ++   + L+ P +L+  +  I S + Q   + +   +KP 
Sbjct: 61  SELAYQGFQD--ALIDVAIAIAKEIAYLLAPIILVAALIAIFSNMGQFGFLFSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T++   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINTLMQIPTCGLECVPA 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK+++
Sbjct: 179 VTGVMIKQLMIISSVGFVVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        E   R+ +++TNPTH A+ L Y + E   P++     + +AK+M  I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPIITLMETDAMAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  +P+ ++  LAR+L+    ++  IP    +A A+++  +
Sbjct: 299 AREEGVPVMQKVPLARALYADGNVDQYIPSELIEATAEVLRWL 341


>gi|269792925|ref|YP_003317829.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100560|gb|ACZ19547.1| flagellar biosynthetic protein FlhB [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 366

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 175/346 (50%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + +K   A  EG    S++ +    I + L+ +L F       +      ++ 
Sbjct: 15  EEKTEPATPRKRRKAREEGQVTKSQDLTAAVVIASGLLGVLVFGGFFFRRLQLLFAQVMG 74

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 +     ++   +    S   +  P  L   +  +G    Q   ++    + P+ 
Sbjct: 75  YLKDPSMGGEEWLLLPFSRALGSYLLIWFPLGLACALAALGLMAYQVGLMITPKPLVPNL 134

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++   G+K+++S  + V  +K  +K +++  ++  +L ++  T+L  I       L  
Sbjct: 135 NRMNPVSGMKKMFSGRSFVEMLKGVLKALILLLMLYGALRKDLLTLLGAIGQPFGEGLGL 194

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
             + V  + + + L +  L + D  +   ++   ++MSKQEIK+E KQ  G+P++K R +
Sbjct: 195 VMWRVWVLCMKMTLMLMVLGLFDYAYQRWEFERSIRMSKQEIKEEYKQMEGDPLVKRRIR 254

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R   R +MM    +A ++ITNPTH A+AL Y +   +APV++AKG+ LIA+++R+IA
Sbjct: 255 QRQRELARRRMMSDVPKADVVITNPTHVAVALSYDRKVAEAPVVLAKGKGLIAQRIREIA 314

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E+ +P+ + P LAR+++ QV +   IP   YKAVA+++  +Y  +
Sbjct: 315 RENRVPVVQNPPLARAIYAQVEVGEEIPESLYKAVAEVLAFVYRLR 360


>gi|153832518|ref|ZP_01985185.1| VscU [Vibrio harveyi HY01]
 gi|156974012|ref|YP_001444919.1| Type III secretory pathway, component EscU [Vibrio harveyi ATCC
           BAA-1116]
 gi|41834187|gb|AAS13325.1| VscU [Vibrio harveyi]
 gi|148871313|gb|EDL70185.1| VscU [Vibrio harveyi HY01]
 gi|156525606|gb|ABU70692.1| hypothetical protein VIBHAR_01723 [Vibrio harveyi ATCC BAA-1116]
          Length = 349

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + ILA LI +LF F+    S  S L +L 
Sbjct: 2   SGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILA-LIAVLFAFADYYMSHISALLLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   ++ +   ++     L+ P L++  +  I S + Q   + +   VKP 
Sbjct: 61  SELAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N  T+L   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRGNLNTLLQIPTCGLECVPT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V++++I+  +    +   D  +       +LKM+K E+K E K+  G+P IK+++
Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +AK+M  I
Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+E  IP+ ++  LAR+L+    +N  IP    +A A+++  +
Sbjct: 299 AHEEGIPVMQKVPLARALYADGQLNQYIPGDLIEATAEILRWV 341


>gi|219670145|ref|YP_002460580.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense
           DCB-2]
 gi|219540405|gb|ACL22144.1| flagellar biosynthetic protein FlhB [Desulfitobacterium hafniense
           DCB-2]
          Length = 350

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KT   + ++ ++A  +G    S E      +++ +  L F+    +  V+     +   
Sbjct: 3   EKTFQATPRRRQEARKKGQVFKSTEMVSALMLVSFIGLLKFYVPTMLEKVSQIFPYVYGL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           + +        +  L+  L     ++V P  ++  +   G+  +Q   +  L  +KP   
Sbjct: 63  SAEW---TARSVASLMVDLLWLGVQIVAPLFVVGAVIATGANYLQVRSLFTLEPLKPQLS 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R+S+  G KR++ +   V  +KS +K+  +G  +  ++ +N+                  
Sbjct: 120 RISMISGAKRMFGMKAWVELIKSLLKVTFIGYFLYATIRDNFEIFPVMARLTVGQGAMFI 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + ++   I L    +  +D  + +  +   LKMS +E+K E KQ+ GNP +K   K 
Sbjct: 180 GGLIVELGWKIALSFFVIAAIDFLYQWWDYEKNLKMSHEELKQEYKQTEGNPQLKGEIKR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R+    +MM+    A +++TNPTHYA+ALRY   EN APV+VAKG + IA++++++A 
Sbjct: 240 KQRAMSMRRMMQDLKTADVVVTNPTHYAVALRYDPKENSAPVVVAKGADEIAQRIKQLAK 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ I   E   LAR+LF Q  I  A+P   YKAVA+++  +Y  K
Sbjct: 300 DYGIITMENKPLARALFAQAEIGQAVPADLYKAVAEVLAFVYRLK 344


>gi|312883875|ref|ZP_07743592.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368333|gb|EFP95868.1| Type III secretory pathway, component EscU [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 350

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 97/343 (28%), Positives = 182/343 (53%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    S+++  L+ +LF FS    S  S L +L 
Sbjct: 2   SGEKTELPTPKKLRDARQKGQVAKSQEVVS-STLILALVAVLFAFSDYYMSHISALMLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   +V +   ++     L+ P LL+ ++  I S + Q   + + + VKP 
Sbjct: 61  SKLAYQGFQD--ALVDVAIAMAEEIIYLLAPILLVTVLVTIVSNMGQFGLLFSAHSVKPE 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +LV+F+KS +K+ L+  II I+L  N  T+L+  +   + +  
Sbjct: 119 IKKINPAEGAKRIFSMKSLVDFIKSILKVSLLSCIIWITLKGNLNTLLNIPNCGLNCVPI 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V++++ +  +    +  +D  +  ++   +LKMSK E+K E K+  G+P IK+ +
Sbjct: 179 ITGVLVQQLMFISAIGFIIIAAVDYAYQKYEHTKQLKMSKDEVKREYKEMEGSPEIKSAR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +AK+M  +
Sbjct: 239 RQFHQELQSSTQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAL 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  IP+ ++  LAR+L+    ++  IP    +A A+++  +
Sbjct: 299 AREEGIPVMQKVPLARALYADGQLDQYIPGELIEATAEILRWV 341


>gi|153011537|ref|YP_001372751.1| flagellar biosynthesis protein FlhB [Ochrobactrum anthropi ATCC
           49188]
 gi|151563425|gb|ABS16922.1| flagellar biosynthetic protein FlhB [Ochrobactrum anthropi ATCC
           49188]
          Length = 356

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 119/346 (34%), Positives = 198/346 (57%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL +GN P SRE  + + I + LI  +F   P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALEKGNMPFSRETPILAGIASFLIIAVFVAGPATTKLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L   L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDASRLFGVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K +    I+ +          D ++++
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKFLAASVIVFVVFFNGNSLFTDAVASD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       + ++L+  +L I  +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRENMVRLLVANVLAITAIAAFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+     AT+I+ NPTH+++ALRY   ++ AP++VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINTVPTATLIVANPTHFSVALRYKPDQDAAPIVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            K+R+IA +H+IPIFE+  LAR+L+KQV ++  I P FYKAVA+LI
Sbjct: 301 LKIREIAAQHSIPIFEDVPLARALYKQVNVDQMIAPEFYKAVAELI 346


>gi|283955188|ref|ZP_06372690.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793401|gb|EFC32168.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 362

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 184/351 (52%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+    ++  +   L         + +
Sbjct: 1   MASED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTVTLLMMGFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMVAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  LV  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKLVESVKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVMVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|84621748|ref|YP_449120.1| type III secretion system protein HrcU [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|9711589|dbj|BAB07858.1| HrcU [Xanthomonas oryzae pv. oryzae]
 gi|84365688|dbj|BAE66846.1| HrcU protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 359

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +       +  + +   +  
Sbjct: 2   SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L   ++ G+     Q     +L  V P 
Sbjct: 62  D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  I  
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVMWVGIRTLMPMIIGLAYETPLDISQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     +  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRQRVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  AIP   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341


>gi|91795014|ref|YP_564665.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
           OS217]
 gi|91717016|gb|ABE56942.1| flagellar biosynthetic protein FlhB [Shewanella denitrificans
           OS217]
          Length = 376

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 167/353 (47%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE     +KTE  + ++I  A  +G  P S++ +  + IL C + L    +    +  S
Sbjct: 1   MSE-TPKHDKTEDATPQRIRKAREQGQVPRSKDLASAALILGCSLMLTS-SADWFATKIS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L       +   L     ++  L    +    L+ P  L+  +    +  +   P+ + 
Sbjct: 59  QLTRYNMLVSHEDLLQDDVMLMHLGTSLIKMLELLGPLFLIVALLAAIAGALPGGPIFSF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    GI RI+S  +L+  +KS +KI L+  I+   L  +    L +    
Sbjct: 119 ENANFKYSRIDPIAGIGRIFSSRSLIELLKSVLKITLLIGIMLSFLDTHLIDFLSYSQLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   ++ + L +  +  +D+ + Y     +LKMS+QEIKDE KQ  G P
Sbjct: 179 VDEAVTRGIDMLSAGMLYLGLGLIVIAFIDVPYQYWHHLQELKMSRQEIKDEHKQQEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + +     R +   +  +A +++ NPTHYA+AL+Y     DAP ++ KG+  +A
Sbjct: 239 EVKAKIRQLQHRMGRSRADTSIPKADVLLVNPTHYAIALKYDPELADAPYVLTKGKEELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MRK+A +H++ I E P+LAR+++    ++  IP   + A+A ++  +   K
Sbjct: 299 LYMRKLAKQHDVEIIEIPALARAIYYSTQVDQQIPGALFMAIAHVLSYVMQIK 351


>gi|255321961|ref|ZP_05363111.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277]
 gi|255301065|gb|EET80332.1| flagellar biosynthetic protein FlhB [Campylobacter showae RM3277]
          Length = 358

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 193/353 (54%), Gaps = 10/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYS 57
           M+  D    KTE P+SKKIEDA  +GN P S++ + F ++   +   + LL F     ++
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKDGNVPKSQDLAGFVTLAVAIFVVVALLGFIGDQFFT 58

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           + +    L+     RKL     I  +   L      +++P  +   + G+ + L+Q   +
Sbjct: 59  LYNYYQSLIGQEFTRKLLFSVAITTIFRTLL-----IILPIAVCIAIAGVVANLMQFGFI 113

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                ++P+  +++  +G+K ++S+  L++ +K  +K+  V T+  +        +   +
Sbjct: 114 FTTKPLEPNLNKINPIKGLKNLFSLKKLIDGIKMVLKVTAVFTVGFLMFLSFIKELPHTL 173

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  + L      +  +  ++L+ +  + +LD+     Q++  L+MSKQEIKDE KQ  
Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRFQYFRDLRMSKQEIKDEYKQME 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + +     R++MM+   +A +IITNPTHYA+ALRY +T+  APV++AKG +
Sbjct: 234 GDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAKGVD 293

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +A ++++I  ++N+ I E P LAR L+K   +N  IP   ++AVA+++  +Y
Sbjct: 294 FLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346


>gi|167750709|ref|ZP_02422836.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702]
 gi|167656388|gb|EDS00518.1| hypothetical protein EUBSIR_01687 [Eubacterium siraeum DSM 15702]
          Length = 353

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 179/346 (51%), Gaps = 2/346 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KTE  + KK +D   +G    S+E ++   ++    +L  F +     + + +   
Sbjct: 2   AGEEKTEKATPKKRKDTRKKGEVLQSKEVAVAVFVVGIFAFLAIFGNYMFQMLLNFMEQS 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           ++S  +     +   + +   +++     V P L + ++  +   ++Q   + ++  +KP
Sbjct: 62  MSSIDKTG-NTVEFAMSVFWKVAIICICTVGPILAVGVVLSVLPVIVQTKGLFSMEAMKP 120

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F R++   GIKR++S+  LV  +K  ++II+V  I+   + +        I  +   I+
Sbjct: 121 KFSRLNPFTGIKRLFSMQALVGLVKGLIEIIVVVAILYFQVMDRINEFKKLIDTDVIKIV 180

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
            +   T   +++ I + +  +   D  + +  +  KLKMSKQE+KDE KQ  G+P IK +
Sbjct: 181 AYISETAMSLIVTIFVMLVFVAAADYVFQWWSFEKKLKMSKQEVKDEYKQLEGDPQIKGK 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN-DAPVLVAKGQNLIAKKMR 304
            K   +   + +MM+    A +++ NPTHYA+AL+Y +     APV+VAKG + +A ++ 
Sbjct: 241 IKRKQQEMAQQRMMQEVPSADVVVRNPTHYAVALKYDRKTAYRAPVVVAKGTDALALRIV 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +A EHN+ I E   LAR L++ V I   IP  FY AVA+++  +Y
Sbjct: 301 AVAQEHNVYITENRPLARGLYEAVDIGQEIPREFYTAVAEVLAMVY 346


>gi|197120182|ref|YP_002140609.1| flagellar biosynthesis protein FlhB [Geobacter bemidjiensis Bem]
 gi|197089542|gb|ACH40813.1| flagellar biogenesis protein FlhB [Geobacter bemidjiensis Bem]
          Length = 353

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 184/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D   +KTE P+SKKIE+A N+   P SRE +   S++  ++ L       + ++ +
Sbjct: 1   MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTLYASSGLFLRTMKT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +     + +L   +    ++      A  ++ P +L+ ++ GI   + Q    ++ 
Sbjct: 60  SMQEIFGGLARPELTYAAVHTLMIKEFGYLAI-MLAPFILVGIVVGIAVEVTQGGVTVSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    R++  +G+ R+++ +++    KSF+K+ +VG +    LTE    ++  +  +
Sbjct: 119 EKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIVYLVDQD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I+        K+++     +  L VLD+ +   ++   LKM+KQE+KDE K   G+P
Sbjct: 179 LMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFMDNLKMTKQEVKDEHKNMEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + K       R +M +    A +++TNPTHYA+AL+Y + +  APV++ KG + +A
Sbjct: 239 AIKGKMKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++  A E+N+ + E   LAR L+ QV     IP   + AVA+++  +Y  K
Sbjct: 299 LQIKITARENNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351


>gi|168704083|ref|ZP_02736360.1| flagellar biosynthesis protein FlhB [Gemmata obscuriglobus UQM
           2246]
          Length = 355

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+   ++KTE P+ ++ E+A  +G  P S E      ++A ++ L +       ++ +
Sbjct: 1   MAEDVDQESKTEDPTPRRREEARRQGQVPFSAELVGSLVLVAGVLGLRYLGPDLWATMIT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L    + +    +    LL   +L     ++P   L +  G+G+ + Q    LN 
Sbjct: 61  VFRADLPRVGREEF-GTAEAAELLGRTALRMIGAMLPFFGLLLAVGVGASVAQVGFQLNT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P+  +++   G+ R++S+ ++V  + +  K++ +  +    L      +       
Sbjct: 120 EKLEPNLDKLNPVGGLGRLFSLGSVVRGLLTVAKVLALAGVAYYVLNGRGGLIASIGMGR 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                  A+  V ++ + +   +A + V D  +  +++   L M+K+E+K E+KQ  G+P
Sbjct: 180 IGEAAPVAWALVMRLALYLAGAVALVAVFDYAYQRYKFEQSLMMTKEELKQELKQEEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + IAR R + KM+    +AT+++TNPTHYA+ALRY    + APV+VAKG+   A
Sbjct: 240 HVKARVRQIARERTKRKMLSEVPKATVVVTNPTHYAVALRYDSNRDSAPVVVAKGKGAFA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ K A E  +P+ E P LAR+L   V     IP   ++AVA+++  +   +
Sbjct: 300 LRIAKRARESGVPVLERPPLARALH-SVREGQQIPSALFRAVAEVLAFVMKMR 351


>gi|121613536|ref|YP_001000045.1| flagellar biosynthesis protein FlhB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87250257|gb|EAQ73215.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 368

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +   LF  S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLFMMSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVTQLAWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|268678882|ref|YP_003303313.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616913|gb|ACZ11278.1| flagellar biosynthetic protein FlhB [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 353

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 106/351 (30%), Positives = 184/351 (52%), Gaps = 5/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE  +SKKIEDA  EGN P S++ S F +++  L   L + S     +  
Sbjct: 1   MADD---QEKTEEATSKKIEDARKEGNVPKSQDMSAFVTLVVALGAFLAWLSFIESRIIY 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
             H   +       ++++  + L++        +VIP  L   + GI + ++Q   +   
Sbjct: 58  LYHYYQSLIGTEITKEVTFQISLIS--LREVVFMVIPLALAVAIAGILANVMQTGFLFTT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F ++   +G K ++S+  L+  +K+ +K+ +V  I    L      +   I   
Sbjct: 116 KPLMPNFGKLDPIKGFKNLFSLKKLIETVKTLLKVSVVMGISYFFLWSFTKELPTVIYFP 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +  +  +IL+ +  L + D+      ++ +L+MSKQE+KDE KQ  G+P
Sbjct: 176 LPDQMAWLKEKMLILAAVILIILLVLALADLMLVRFNYFKELRMSKQEVKDEYKQMEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + I     R +MM+    A ++ITNPTHYA+A+RY Q +  AP ++AKG +L+A
Sbjct: 236 KIKAKIRQIQMQMTRKRMMQEIPGADVVITNPTHYAVAIRYHQDKEAAPKVIAKGTDLVA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++++IA  H+I I E P LAR L+K+  I   IP   YKAVA+++  +Y 
Sbjct: 296 LRIKEIALNHHIQIVENPPLARELYKKCNIGELIPENLYKAVAEVLAFVYK 346


>gi|253988526|ref|YP_003039882.1| type III secretion component protein sctu [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637892|emb|CAR66521.1| type iii secretion component protein sctu [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779976|emb|CAQ83137.1| type iii secretion component protein sctu [Photorhabdus
           asymbiotica]
          Length = 350

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 180/345 (52%), Gaps = 3/345 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S E    +S++  L+ ++   S       S L ++ 
Sbjct: 2   SGEKTEKPTPKKLRDARKKGQVTKSTEIVS-TSLILGLVGMIMVMSDYYLEHLSKLMLIP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A+  ++       +  ++ +L      L +P L + ++  + S+  Q   +L+ + +KP 
Sbjct: 61  ANLLEKPF--PQALNHVVENLMQELVYLCLPILSVSVLLSLASHFAQYGFLLSGHSIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K+ L+ T+I ++L  N   +L+        I+ 
Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLIWVTLEGNLQGLLNLPECGSRCIIP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  +    +++ D  + ++Q   +L+MSK EIK E K+S G+P IK+++
Sbjct: 179 VLGMMLTQLMTVCGIGFIIISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M  +   +++I+ NPTH A+ +RY + E   P++  K  +  A ++R+I
Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A E  IP+ +   LAR+L++   I+  IP    +A A+++  +  
Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVLRWLDQ 343


>gi|86151337|ref|ZP_01069552.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315123900|ref|YP_004065904.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841684|gb|EAQ58931.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315017622|gb|ADT65715.1| flagellar biosynthetic protein FlhB [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 362

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+    ++  +   LF  S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVILIIGVTITLFMMSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|225849160|ref|YP_002729324.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644259|gb|ACN99309.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 352

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 178/344 (51%), Gaps = 2/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + K+ + A  EG    S + ++  S+    + ++F+       +        ++ 
Sbjct: 7   KTEKATPKRRQKAREEGQVLKSTDVAVALSLFVVFLVMIFYIPFLYKYLLGYFKYTFSNP 66

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
                E+        T   L+   L++P + +  + GI + + Q   +  L  + P   +
Sbjct: 67  FYLIPEESGKNFIWFTFKVLAI--LILPFVSILFIVGIVANVAQFGFLFTLKPLTPKLSK 124

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++   G++R++S++ L   +KS +K+ L   +    ++      L +++AN +S +Y   
Sbjct: 125 INPISGLQRLFSLSTLFELVKSILKLSLALFVSYFLVSYLLDGFLVYMTANINSQIYILA 184

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            T+  +++        + + D  +  +++   LKM+K E+K+E K   GNPI+K   +  
Sbjct: 185 KTIIILIMAFTFLSIPIAIADFFYRRYEYEENLKMTKDEVKEERKSYEGNPIVKKEIRKR 244

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M+    +A ++ITNP HYA+AL+Y + +  AP ++AKGQ+LIA K++++A E
Sbjct: 245 MRQLALKRMIAEVPKADVVITNPDHYAVALKYEKGKMKAPQVIAKGQDLIALKIKEVAKE 304

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           HN+ I E+P LARSL+    +   IP  FY+AVA+++  IY +K
Sbjct: 305 HNVKIVEDPPLARSLYSSCEVGDYIPEDFYEAVAKILAVIYKQK 348


>gi|323490157|ref|ZP_08095377.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2]
 gi|323396205|gb|EGA89031.1| flagellar export machinery protein [Planococcus donghaensis MPA1U2]
          Length = 362

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 177/346 (51%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K +++  +G    S E +    I+  ++ L       +  + +   +   
Sbjct: 14  GEKTEKATPQKRQESKRKGQVAKSPEVAAAMIIIGGIVLLNSMGGWMMDRILAIYRIHFT 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                ++   + I  L   ++++A  L++P +L+ M+FG     IQ   +   + +   F
Sbjct: 74  QYISWEI-TPATIRTLFEQMAMNAFLLMLPIMLVGMIFGFLGNFIQVGAIFTADPIMAKF 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R+   +G KRI+++  LV   KS +KI ++G      L      +      +       
Sbjct: 133 ERLDPIKGAKRIFALRALVELGKSLLKIAIIGGAAFGVLWVGKDELFTLSQKSIGYSFSF 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V ++ ++  L + +L+VLD  +  +++   +KMSKQ+IKDE K++ G+P+IK++ K
Sbjct: 193 IGSLVFQMGLIAGLILLSLSVLDYIYQKYEFEKGIKMSKQDIKDEYKKAEGDPLIKSKIK 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R    ++M++    A ++ITNPTHYA+A++Y     +APV++A G++ +A K+++ A
Sbjct: 253 DKQRQMSMNRMIQDLPSADVLITNPTHYAIAIKYDAETMEAPVIIAMGKDYLALKIKEKA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E  I   E   LAR+L+ QV +   +P   + AVA+++  IY  K
Sbjct: 313 KEFGIVTMENKPLARALYAQVEVGDVVPEELFLAVAEVLAYIYRLK 358


>gi|209884540|ref|YP_002288397.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
 gi|209872736|gb|ACI92532.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
          Length = 355

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 191/353 (54%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+   D+KT+ P++K++E+A   G+   S E + +  +      +  F      S+T 
Sbjct: 1   MAED--SDDKTQDPTAKRLEEAHKRGDVAKSIEVNTWFMVAGATFVMSSFSDSVASSITV 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL  A + +++  S +        +    L +P LLL +   I S+L+Q  PV + 
Sbjct: 59  PLKNLLQHAGEMRVDGASLLQLAARLEIMLLVALGLPFLLLVI-AAIASHLVQHRPVWST 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P + ++S   G KR++      NF K   K+I +G ++ + +   +      +  +
Sbjct: 118 DPITPKWSKLSPLAGAKRLFGKQAAANFAKGLFKVITIGVVMAVVMWPEHERADAMVRLD 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +L        K++  ++  +A +  LD  + Y  W+ + KMS QE+KDE KQS G+P
Sbjct: 178 PSLMLDLTRSMALKLMGTVVAMLALVAALDYLFQYRSWFERQKMSLQEVKDEYKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R +++  +R+R +MM A   A+++ITNPTHYA+ALRY +    AP+ VAKG +LIA
Sbjct: 238 QIKGRIRALRMARVRKRMMAAVPTASVVITNPTHYAVALRYERG-MPAPICVAKGVDLIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  H++PI E   LAR+L   V I+  IP   Y AVA++I  +   K
Sbjct: 297 FKIREVATAHDVPIVENVPLARALHASVEIDDEIPVEHYHAVAEVIGYVMRLK 349


>gi|37527636|ref|NP_930980.1| Type III secretion component protein SctU [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787071|emb|CAE16146.1| Type III secretion component protein SctU [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 351

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S E    +S++  LI ++   S       S L ++ 
Sbjct: 2   SGEKTEKPTPKKLRDARKKGQVTKSNEVVS-TSLILGLIGMIMVMSEYYLEHLSKLMLIP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A+  ++          ++ +L      L +P L +  +  + S+  Q   +L+ + +KP 
Sbjct: 61  ANLLEKPF--PQAFNHVVENLMQELVYLCLPILSVSALLSLVSHFAQYGFLLSGHSIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K+ L+ T++ I+L  N   +L         I+ 
Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWITLAGNLQALLRLPECGTRCIVP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  + +  +++ D  + ++Q   +L+MSK EIK E K+S G+P IK+++
Sbjct: 179 VLGIMLTQLMTVCGIGLIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M  +   +++I+ NPTH A+ +RY + E   P++  K  N  A ++R+I
Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTNAQALQVRRI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A E  IP+ +   LAR+L++   I+  IP    +A A+++  +  
Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDQYIPADLIQATAEVLRWLEQ 343


>gi|319787087|ref|YP_004146562.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465599|gb|ADV27331.1| flagellar biosynthetic protein FlhB [Pseudoxanthomonas suwonensis
           11-1]
          Length = 379

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 168/353 (47%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+    KTE P+ ++ E A+ +GN P SRE S    +    +  +           S
Sbjct: 1   MAENEDGQEKTEQPTGRRREKAIKQGNLPRSRELSNAV-LFGSGVVAMMAGGSMFARGAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  +     LE    +   +  L L    +++P + + +     +  +        
Sbjct: 60  GWFRQALTPDLVMLESPGELFGYMGILLLRLVLVMLPLIGVALAACFVAPGLMGGFHFTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P  +R++   G+KRI+S   LV   KS +++ L+     + L   +  +      +
Sbjct: 120 ESLQPKPERLNPLAGLKRIFSSEGLVEVAKSLLRVALLVIACGLVLVHGFDVLKAMPGQS 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                        ++L    + +  L + D  +    W  KLKM++QE+++E+K++ GNP
Sbjct: 180 LEDAASTGLHFAGRLLGAAAVALVLLALADAPYQKWNWTRKLKMTRQEVREEMKETDGNP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + +     + +MMEA   A +++ NPTHYA+AL+Y      AP +VAKG + +A
Sbjct: 240 QVKGKIRQMQFQMSQRRMMEAVPTADVVVVNPTHYAVALKYEGGTMRAPKVVAKGVDEMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A +H I     P LAR+L+++  I+  IP   Y AVAQ++  +Y  +
Sbjct: 300 MRIREVADQHRIATVSAPPLARALYREGEIDKEIPVRLYAAVAQVLSYVYQLR 352


>gi|308050045|ref|YP_003913611.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
 gi|307632235|gb|ADN76537.1| flagellar biosynthetic protein FlhB [Ferrimonas balearica DSM 9799]
          Length = 374

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 175/350 (50%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + +  +KTE  + ++I+ A  +G  P S++ +  +  + C + LL   +      T+DL 
Sbjct: 2   SQSAADKTEKATPQQIKKAREKGQVPRSKDLATAALFIGCALMLLA-SADWFARGTADLL 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S T+  L     +V  +    ++   L+ P  LL  +  + +  +   P+L+L + 
Sbjct: 61  RYNMSLTREDLMAPDVMVRHVGASLVAMINLLSPLFLLIAVLALVAGALPGGPLLSLKNA 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +    R+    GIKR++S+ +LV  +KS +K+ L+   +   L      +L         
Sbjct: 121 EFKGSRIDPIAGIKRMFSMKSLVELIKSILKVSLILGTLYFLLRGRLEGLLGLYRMPLDQ 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            +      +   ++ + + +  + ++D+ W  +    +LKM++Q++KDE KQ  G P +K
Sbjct: 181 AVAEGVSFLAFGILTLGVVLLFIALIDVPWQIYDHQKELKMTRQQVKDEHKQMEGKPEVK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + I +   R +   A  +A +++TNP HYA+AL+Y     DAP ++AKG + +A  M
Sbjct: 241 ARIRQIQQKMARSRAETAIPKADVLLTNPQHYAIALKYEPDRADAPFVLAKGTDELALHM 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A  H + I E P LAR+++    ++  +P   Y A+AQ++  +   K
Sbjct: 301 RQLARRHGVEIIEAPPLARAVYHSTQVDQMVPQALYVAIAQVLSYVLQLK 350


>gi|90423033|ref|YP_531403.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisB18]
 gi|90105047|gb|ABD87084.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisB18]
          Length = 358

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 188/353 (53%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+   KT+ P+ K+++DAL  G+   S+E + +  I    + L  F       + +
Sbjct: 1   MSDDDSS-EKTQDPTQKRLDDALERGDVAKSQEVNTWFMIAGATLVLSSFSGSVGSGLQN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+ ++   + +    +    + L  + + + +P L+L +   +   ++Q   V + 
Sbjct: 60  PLRNLIENSWMIRTDGAGLMALTQSLLYAAIAAMGVPFLMLII-AALAGNMLQHRLVFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F ++S   G KR++      NF+K   K+I +G ++   L    + +   I  +
Sbjct: 119 EGLKPKFSKISPLAGAKRLFGKQAAANFLKGLFKVIALGAVMVAILWPERYRLDAMIRLD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +I+        K++  ++  +A + + D  + Y  WY K KMS QE+K+E KQS G+P
Sbjct: 179 IGAIMGLTIALTLKLMAAVVAMLAAVAIADFFFQYRTWYEKQKMSLQEVKEEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I   R+R +MM A  +A+++ITNPTHY++AL Y      AP+ VAKG + IA
Sbjct: 239 HIKGRIRQIRHQRMRKRMMAAVPQASVVITNPTHYSVALSYENG-MSAPICVAKGVDSIA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  H++PI E   LAR+L+  V I+  IP   Y AVA++I  +   K
Sbjct: 298 FKIREVAKAHDVPIIENVPLARALYATVKIDEEIPVEHYHAVAEIIGYVMGLK 350


>gi|317051542|ref|YP_004112658.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5]
 gi|316946626|gb|ADU66102.1| flagellar biosynthetic protein FlhB [Desulfurispirillum indicum S5]
          Length = 354

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 104/349 (29%), Positives = 184/349 (52%), Gaps = 1/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++   KTE P+ KK+E A  EGN   S++ S  + + A ++ L F     +    + +  
Sbjct: 4   ESDQEKTEEPTPKKLEKAREEGNVAKSKDMSDTAVLFAGVMTLYFLHERMLEGFFAIMRN 63

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L   T+     I+ +      + L    ++ P  L   +F +   + Q   + +   V 
Sbjct: 64  YL-DLTRNTFPTINEMPSFGITILLQMLHILWPLFLALTLFALAINIGQIGLLWSSKAVA 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P + +++  +GI + +S+ NL+   KS +K+ + G +      + + ++L  +   P  I
Sbjct: 123 PKWSKLNPIKGIAQKFSLKNLIEVTKSLLKVSVFGPVAYFIAKDEFGSILMMMHLTPIEI 182

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
              A   + K+ I I+L +  ++ +D  +  +Q + KLKMSKQE+K+E KQ  GNP +K 
Sbjct: 183 FATALMIIFKIWITIILIMLIVSAVDFYFQKYQHHEKLKMSKQEVKEERKQMDGNPEVKQ 242

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R +S+ R     +MM    ++ ++ITNP   A+AL+Y      AP LVAKGQ L+A+++R
Sbjct: 243 RIRSLQREMAMKRMMGDVPKSDVVITNPLFLAVALKYDTEVKAAPYLVAKGQELVAQRIR 302

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A EH+IPI ++P LAR L+  +     I    Y+AVA+++ +IY +K
Sbjct: 303 DLALEHDIPIQQDPLLARQLYDSLEPGDEITHELYQAVAEILAEIYRQK 351


>gi|322421718|ref|YP_004200941.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18]
 gi|320128105|gb|ADW15665.1| flagellar biosynthetic protein FlhB [Geobacter sp. M18]
          Length = 352

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 185/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D   +KTE P+SKKI DA ++GN   SRE +   +++  +I L       + ++   + 
Sbjct: 2   SDDKHSKTEKPTSKKISDAKSKGNVARSREMTSAVTLITAMIALYASSGIMLKTLQGTMK 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +       ++     +  L+     +   ++ P LL+ ++ G+   + Q    L+   +
Sbjct: 62  DIFGGLASIEI-TPGGVHHLMIKEFANLGIMLTPFLLVGIISGLAVEISQGGINLSSEKL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K    R++  +G+ R+++ +++   +KSF+K+ +VG +    L E    ++  +  +   
Sbjct: 121 KFDLGRLNPVQGMGRLFNKDSVFQVVKSFIKMGIVGYMAYKILAEEMEGIIFLVDQDLLG 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL        K+++     +  L VLD+ +   ++   LKM+KQE+KDE K + G+P IK
Sbjct: 181 ILQFIGHISFKIVLHTCGVLIILAVLDLAFVKWRFLDNLKMTKQEVKDEHKNTEGDPAIK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            +Q+  A    R +M +    A +++TNPTHYA+AL+Y + +  APV++ KG + +A ++
Sbjct: 241 GKQRQKAFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRLKMAAPVVLFKGVDQMALQI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A E+N+ + E   LAR L+ QV   S IP   + AVA+++  +Y  K
Sbjct: 301 KIVARENNVTLVENRFLARELYAQVEEGSEIPEGLFAAVAEILAYVYSLK 350


>gi|283955760|ref|ZP_06373251.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792715|gb|EFC31493.1| flagellar biosynthetic protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 362

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 186/351 (52%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +   L   S     + +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTITLLMMSFMGERIVN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ G+   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMIKSIFEVLIILAPIVLSIMIAGVLGNIMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  +V  +K  +K+ +V TI  I L +    +       
Sbjct: 117 KPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFIVLLKFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L         +  ++++    + VLD+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+A+RY  ++  AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIRYDTSKEQAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AYE+N+ ++E P LAR L+K   +N  IP   +KAVA+++  +Y+
Sbjct: 297 LRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREMFKAVAEVLGFVYN 347


>gi|269105053|ref|ZP_06157748.1| type III secretion inner membrane protein HrpY [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160688|gb|EEZ39186.1| type III secretion inner membrane protein HrpY [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 352

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 178/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + ILA L+ +LF F+    S  S L +L 
Sbjct: 2   SGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILA-LVAVLFAFADYYMSHISALLLLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   ++ +   ++     L+ P L++  +  I S + Q   + +   VKP 
Sbjct: 61  SELAYQGFQD--ALLDVAIAIAKEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L +N  T+L   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRDNLNTLLQIPACGLECVPT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V++++I+  +    +   D  +       +LKM+K E+K E K+  G+P IK+++
Sbjct: 179 ITGVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        +   R+ +++TNPTH A+ L Y + E   PV+  K  + +AK+M  I
Sbjct: 239 RQLHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+E  +P+ ++  LAR+L+    +N  IP    +  A+++  +
Sbjct: 299 AHEEGVPVMQKVPLARALYADGQLNQYIPGDLIETTAEILRWV 341


>gi|153947127|ref|YP_001399615.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           31758]
 gi|152958622|gb|ABS46083.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis IP
           31758]
          Length = 377

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  ++   K+E P++ K+  A  +G+ P S++ ++ + ++   I L  F  P    + S
Sbjct: 1   MS--NSSGEKSEKPTTGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKELIS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              V ++    +  +  +   FLL +L + A  L    L+   +F + + LI        
Sbjct: 58  QSFVSVSQLASQLNDQGALEQFLLANLFIFAKFLA--TLVPIPLFSMLATLIPGGWNFTP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K++S   GIKRI+S +N    +K   K  +V   + + +  +   +L   +  
Sbjct: 116 VKLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLP 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +   F     +L+  +  +    ++DI  S+H +  K+KM+KQE+K E K + GNP
Sbjct: 176 LEEAITQGFAQYHHILLYFIAIVVVFAIIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK+R + + R     ++ +    A +IITNPTH+++AL+Y   +  AP +VAKG++ IA
Sbjct: 236 EIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R IA +H I I E P LAR+++    +N  IP   Y+A+AQ++  +   K
Sbjct: 296 LYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348


>gi|304412527|ref|ZP_07394133.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|307307186|ref|ZP_07586924.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
 gi|304349169|gb|EFM13581.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS183]
 gi|306910425|gb|EFN40856.1| flagellar biosynthetic protein FlhB [Shewanella baltica BA175]
          Length = 376

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 164/353 (46%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS      +KTE  + +K   A  EG  P S++ +  + ++ C   L    +    +  S
Sbjct: 1   MS-KTPQQDKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTN-ADWFATRVS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L       T+  LE    ++  L    +    ++ P  ++  +    +  +   P+ N 
Sbjct: 59  GLTKYNMLLTRADLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    G+ RI+S  +LV  +KS +KI+L+  I+ + L  +   +L +    
Sbjct: 119 GNANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + + +  +   +  +  +D+ + Y     +L+MS+QE+KDE  Q  G P
Sbjct: 179 IDEAVRDGINLLSQGMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + I +   R +      +A +++ NPTHYA+AL+Y     DAP ++ KG   +A
Sbjct: 239 EIKAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A +H+I I + P L R+++    ++  IP   + A+A ++  +   K
Sbjct: 299 LYMRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351


>gi|283834479|ref|ZP_06354220.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
 gi|291070026|gb|EFE08135.1| flagellar biosynthetic protein FlhB [Citrobacter youngae ATCC
           29220]
          Length = 379

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKARQEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q  + D   I   L H  L   + ++  LL   +  + + L+    +   
Sbjct: 59  ESFISVHQYAQ-NINDPDIIGQFLEHHLLILGKFIL-TLLPMPVAALFASLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S ++LV+  K  +K I++  ++ IS+  N    L      
Sbjct: 117 KKILPDFSKLSPLKGISRLFSTDHLVDTGKMTLKAIVLLVMLWISVRNNVAAFLGLQELY 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         ++   ++      V+D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKQAISDGLALYSSIMRNFVILFVFFAVIDVPLAKKMFTKGLKMTKQEVKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            ++ R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVRARIRRLQRQMAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E NI I E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAESNIEIVEFPKLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|260893861|ref|YP_003239958.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4]
 gi|260866002|gb|ACX53108.1| flagellar biosynthetic protein FlhB [Ammonifex degensii KC4]
          Length = 356

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 180/353 (50%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS       KTE  + +++E+A  +G    S E S   + LA +          + ++T 
Sbjct: 1   MSLFGPGQEKTEPATPRRLEEARRKGQVARSAELSGALACLALVFVCYLLKEQALLTLTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +H  L+  T       +     L         L+ P  L  ++  IG  L Q   V + 
Sbjct: 61  GMHHSLSFLTGDL--TPASAAVALGFWGRILLELLAPFFLTALVLAIGVNLAQVGFVFSP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R+S+  G+ RI+S+  LV   K+F K+++VG+I    + +    +   +   
Sbjct: 119 SVLLPKLDRISITRGLGRIFSLQGLVELGKAFFKLVIVGSIAVFVIRQEIPRLFLLLETP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +        + ++ +++ L    L +LD  +  +++  +L M+K E+K+E+KQ+ G+P
Sbjct: 179 PLAGFTLVAGILLRLGVVVGLAYLALGLLDFFYQRNRYRKELMMTKAELKEELKQTEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K   +   R    +++ +   +AT+++TNP H A+AL+Y     +AP +VAKG   +A
Sbjct: 239 LVKGWIRRRLRQVSLNRIRQEVPKATVVVTNPLHIAVALKYEPP-MNAPKVVAKGAGFLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++IA  + +P+ E P +A+ L+++V +   IPP  Y+AVA++I  +Y  +
Sbjct: 298 QKIKEIARANGVPVVENPPVAQFLYRRVEVGQEIPPALYQAVAEIIALVYRLR 350


>gi|218288313|ref|ZP_03492612.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258511391|ref|YP_003184825.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218241672|gb|EED08845.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257478117|gb|ACV58436.1| flagellar biosynthetic protein FlhB [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 361

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 185/348 (53%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A   +TE  + ++ ++A  EG    S E +   +  A ++  L    P ++    +L   
Sbjct: 10  AAGERTERATPRRRQEARKEGRVARSPELTSAVAF-AAVLVALRILGPAVWGEWENLIQR 68

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
               +  K   +  +  L+    ++A+R+++P   +  + G+ + ++Q  P+     + P
Sbjct: 69  DLGGSALKSWTVEGVRALMATQVMAAARIMLPIAAVAAVIGLAAAVMQVRPLFVPQLLLP 128

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F+R+S   G +RI S+   +  +KS +K+  V  +   SL      M++  +A   ++ 
Sbjct: 129 DFQRISPATGWRRIASLQGALEALKSLLKLAAVVGVAYTSLASLAHQMINLSAAELDAVP 188

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 V  + I +   +  +  +D  +  +     L+MSKQE+KDE+K++ GNP++K+ 
Sbjct: 189 GILGRAVFNLAIRVACAMVVIAAIDYVYQRYSLERSLRMSKQELKDELKETEGNPLVKSA 248

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +  AR     +MM+  ++A ++ITNPTHYA+AL Y     +AP +VAKG + +A+++R+
Sbjct: 249 VRRRARQIASRRMMQNVAKADVVITNPTHYAVALAYQSDTMNAPQVVAKGADFVAQEIRR 308

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A EH++P+ E P LA++L++ V I   IPP  Y+AVA+++  +Y  +
Sbjct: 309 RAEEHDVPLVENPPLAQALYRTVDIGQEIPPDLYQAVAEVLAYVYRMR 356


>gi|22127347|ref|NP_670770.1| flagellar biosynthesis protein FlhB [Yersinia pestis KIM 10]
 gi|45442777|ref|NP_994316.1| flagellar biosynthesis protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809078|ref|YP_652994.1| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua]
 gi|108810729|ref|YP_646496.1| flagellar biosynthesis protein FlhB [Yersinia pestis Nepal516]
 gi|145597798|ref|YP_001161874.1| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F]
 gi|150260268|ref|ZP_01916996.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162420905|ref|YP_001604864.1| flagellar biosynthesis protein FlhB [Yersinia pestis Angola]
 gi|165925101|ref|ZP_02220933.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939028|ref|ZP_02227580.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009039|ref|ZP_02229937.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212135|ref|ZP_02238170.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167398548|ref|ZP_02304072.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418875|ref|ZP_02310628.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425116|ref|ZP_02316869.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466360|ref|ZP_02331064.1| flagellar biosynthetic protein FlhB [Yersinia pestis FV-1]
 gi|218927893|ref|YP_002345768.1| flagellar biosynthesis protein FlhB [Yersinia pestis CO92]
 gi|229837389|ref|ZP_04457552.1| lateral flagellar export and assembly protein [Yersinia pestis
           Pestoides A]
 gi|229840602|ref|ZP_04460761.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842847|ref|ZP_04462999.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900926|ref|ZP_04516050.1| lateral flagellar export and assembly protein [Yersinia pestis
           Nepal516]
 gi|294502771|ref|YP_003566833.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|21960430|gb|AAM87021.1|AE013950_6 putative flagellar biosynthetic protein [Yersinia pestis KIM 10]
 gi|45437643|gb|AAS63193.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774377|gb|ABG16896.1| flagellar assembly protein [Yersinia pestis Nepal516]
 gi|108780991|gb|ABG15049.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
 gi|115346504|emb|CAL19380.1| putative flagellar assembly protein [Yersinia pestis CO92]
 gi|145209494|gb|ABP38901.1| flagellar assembly protein [Yersinia pestis Pestoides F]
 gi|149289676|gb|EDM39753.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162353720|gb|ABX87668.1| flagellar biosynthetic protein FlhB [Yersinia pestis Angola]
 gi|165912984|gb|EDR31609.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923301|gb|EDR40452.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992378|gb|EDR44679.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206881|gb|EDR51361.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962869|gb|EDR58890.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051052|gb|EDR62460.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055879|gb|EDR65660.1| flagellar biosynthetic protein FlhB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682265|gb|EEO78357.1| lateral flagellar export and assembly protein [Yersinia pestis
           Nepal516]
 gi|229690114|gb|EEO82171.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696968|gb|EEO87015.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705512|gb|EEO91522.1| lateral flagellar export and assembly protein [Yersinia pestis
           Pestoides A]
 gi|262360803|gb|ACY57524.1| flagellar biosynthesis protein [Yersinia pestis D106004]
 gi|262364748|gb|ACY61305.1| flagellar biosynthesis protein [Yersinia pestis D182038]
 gi|294353230|gb|ADE63571.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|320016730|gb|ADW00302.1| lateral flagellar export and assembly protein [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 377

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 179/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  ++   K+E P++ K+  A  +G+ P S++ ++ + ++   I L  F  P   ++ S
Sbjct: 1   MS--NSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKALVS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              V +A    +  +  +   FLL +L + A  L    L+   +F + + LI        
Sbjct: 58  QSFVSVAQLASQLDDQGALEQFLLANLFIFAKFLA--TLIPIPLFSMLATLIPGGWNFTP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K++S   GIKRI+S +N    +K   K  +V   + + +  +   +L   +  
Sbjct: 116 VKLIPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLP 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +   F     +L+  +  +     +DI  S+H +  K+KM+KQE+K E K + GNP
Sbjct: 176 LEEAITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK+R + + R     ++ +    A +IITNPTH+++AL+Y   +  AP +VAKG++ IA
Sbjct: 236 EIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R IA +H I I E P LAR+++    +N  IP   Y+A+AQ++  +   K
Sbjct: 296 LYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348


>gi|126176175|ref|YP_001052324.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
 gi|125999380|gb|ABN63455.1| flagellar biosynthetic protein FlhB [Shewanella baltica OS155]
          Length = 376

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 164/353 (46%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS      +KTE  + +K   A  EG  P S++ +  + ++ C   L    +    +  S
Sbjct: 1   MS-KTPQQDKTEEATPQKKRKAREEGQVPRSKDLASAALVVGCSAMLTTN-ADWFATRVS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L       T+  LE    ++  L    +    ++ P  ++  +    +  +   P+ N 
Sbjct: 59  GLTKYNMLLTRADLEQPDIMMRHLGASLVEMLSILGPLFIMVALLAAVAGALPGGPIFNF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +    + R+    G+ RI+S  +LV  +KS +KI+L+  I+ + L  +   +L +    
Sbjct: 119 GNANFKYSRIDPLAGVGRIFSAQSLVELLKSCLKIVLLIGIMLVFLNGHLQELLSYNQRP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + + +  +   +  +  +D+ + Y     +L+MS+QE+KDE  Q  G P
Sbjct: 179 IDEAVRDGINLLSQDMFYLGTGLLVIAFIDVPYQYWHNSKELRMSRQEVKDEHTQQEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + I +   R +      +A +++ NPTHYA+AL+Y     DAP ++ KG   +A
Sbjct: 239 EIKAKIRQIQQRMARSRADTTIPKADVLLVNPTHYAVALKYNPDLADAPYVITKGTEELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A +H+I I + P L R+++    ++  IP   + A+A ++  +   K
Sbjct: 299 LYMRELAKKHDIEIIDIPPLTRAIYHSTQVDQQIPSALFIAIAHVLSYVMQIK 351


>gi|260466631|ref|ZP_05812819.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum
           WSM2075]
 gi|259029637|gb|EEW30925.1| flagellar biosynthetic protein FlhB [Mesorhizobium opportunistum
           WSM2075]
          Length = 360

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 133/353 (37%), Positives = 220/353 (62%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    D+KTE  + KKI D + +G  P SRE +L +S +A L++ +F+    I  +  
Sbjct: 1   MSDAVDKDSKTEEATEKKIRDTIEQGKLPHSRETALLASFVAILVFTVFYAKDAIIDLGM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       ++  + ++ L   + L   R ++  L+L  + GIG+ ++Q +P +  
Sbjct: 61  FLATFLEKPEAWPMDTETDVIALYKLVMLEVGRALVSLLVLLSVAGIGASVLQNMPQIVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F R+S+ +G  R++ +   V F+KS  K+     +++ +L+E++  +L  +  N
Sbjct: 121 ERIRPQFSRISIVKGWNRMFGVQGWVEFLKSLGKVGFAIAVLSFTLSEDHRKLLAGMITN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +           +L+ I+  +  +  +DI WS   W   L+MSKQE+KDE KQS G+P
Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMSKQEVKDEFKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+AR R R +MM A  RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNIPIFE+ +LARS++KQV +++ IP  FY+AVA+L+  +Y KK
Sbjct: 301 LKIREIAREHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353


>gi|148546753|ref|YP_001266855.1| flagellar biosynthesis protein FlhB [Pseudomonas putida F1]
 gi|148510811|gb|ABQ77671.1| flagellar biosynthetic protein FlhB [Pseudomonas putida F1]
          Length = 380

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 102/354 (28%), Positives = 181/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+   A  +G    S+E +  +  LA    LL F      ++ +
Sbjct: 1   MAESESGQDKTEEPTEKRKRTAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +  S T+  + D   +   L      A   V P L+L  +    + +     + + 
Sbjct: 61  -MMRMNFSLTRDIIVDERAMGAFLLASGKMAIWAVQPILILLFVIAFVAPIALGGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S+N L   +K+  K  ++  +  + L  +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLSGIKRMFSMNALTELLKALAKFFVILVVAIVVLVNDRQALLSIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V    + +   +  +   D+ +   Q ++KLKM+KQE++DE K S G P
Sbjct: 180 LDQAIIHSVQVVGWSALWMAAGLLLIAAADVPFQLWQAHNKLKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L+AKG + I
Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+I  EH + I E P+LAR+++    I   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIR 353


>gi|17549613|ref|NP_522953.1| flagellar biosynthetic FlhB transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17431867|emb|CAD18545.1| probable flagellar biosynthetic flhb transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 387

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 175/355 (49%), Gaps = 7/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE  S++++E A  EG+ P SRE   F  +    + L         S+  
Sbjct: 1   MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLATGALGLWVMG----ESIVR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118
                LA   +    D +       ++      L  V+ GL+L ++    S L      +
Sbjct: 56  TASSFLARCLEFHRYDYTRAQEQWQYVGAQFGPLAMVLAGLILMLVLAALSPLALTRGAV 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P   R+    G+KR++S+  L+   +   K++LVG +    +       ++   
Sbjct: 116 SFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPR 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  + +           + +   +  +  +D+  +  Q+  K +M+K+E++ E ++S G
Sbjct: 176 QDLVAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG ++
Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350


>gi|150019066|ref|YP_001311320.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905531|gb|ABR36364.1| flagellar biosynthetic protein FlhB [Clostridium beijerinckii NCIMB
           8052]
          Length = 613

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 183/349 (52%), Gaps = 2/349 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  ++ N+G    S++ S+  +++ C + +   +   + +   ++ + 
Sbjct: 264 AGDDKTEEATPKKKSESRNKGQIARSKDVSVAITMVICTLLISSLWG-MLTNGFKEVLIY 322

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +       + + I  L     +     ++P  L  M+ G+ + L+Q   ++    +KP
Sbjct: 323 FFNFPMIGDFNHATISNLAITTVIKIGSYLLPFALPIMVGGVIASLLQTGFIITAEPLKP 382

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           SF +++   G+K + S  ++V+  K+ V I +V  I    ++ NY ++L   +    S+ 
Sbjct: 383 SFGKLNPLSGLKNMISKRSIVDLSKNLVVITIVSIICYKYISGNYQSILGISNLYLPSLS 442

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 V  +   I + +  +  +D          +++M+KQE+KDE KQS G+P IK +
Sbjct: 443 DEVKNLVVGIFKQICIVLVIIAGIDYFLQVRMHNKEMRMTKQEVKDEYKQSEGDPKIKGK 502

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMR 304
            K   R     +MM++ + AT++ITNPTH A+A++Y + +  +AP +VAKG + +A K++
Sbjct: 503 IKQRQRELGMKRMMQSVADATVVITNPTHLAIAIKYEEGKDMEAPKVVAKGADYVAFKIK 562

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA E+ +P+ E   LAR ++ +V ++  IP   Y+AVA+++  +   K
Sbjct: 563 SIAKENEVPVIENKPLARLMYDRVEVDQDIPQDLYQAVAEILVVVMKLK 611


>gi|222824323|ref|YP_002575897.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100]
 gi|222539544|gb|ACM64645.1| flagellar biosynthesis protein FlhB [Campylobacter lari RM2100]
          Length = 358

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 107/350 (30%), Positives = 197/350 (56%), Gaps = 4/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ +D    KTE P+SKKIEDA  EGN P S++AS  + ++  ++ +LF   P +    S
Sbjct: 1   MAADD--QEKTEEPTSKKIEDARKEGNVPKSQDASAVAVLIVAVVVVLFTL-PFMGERIS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L+    S    +L D+  +  ++    +    +V+P  L+ M+ G+   L+Q   +   
Sbjct: 58  GLYRFYQSFIGIEL-DLKILQKIIIKTMIEMFIMVLPITLVIMIAGVLGNLMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F +++   G+K ++S+  ++  +K  +K+ +V  I  + L +    +       
Sbjct: 117 KPITPNFNKINPLNGLKNLFSLKKIIEALKITLKVGVVFGIAFVFLLQFMQELPRVELYT 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +  L         +  ++++    +  LD+    +Q++  L+MSKQEIKDE KQ+ G+P
Sbjct: 177 IYPQLLWLRDKAIILAAVVIIAFLLIGFLDVLIVRYQYFKNLRMSKQEIKDEYKQTEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R + +     R +M++  + A ++ITNPTHYA+ALRY  ++  AP ++AKG + +A
Sbjct: 237 LVKSRIRRLQMEAARRRMVQDVASADVVITNPTHYAVALRYDSSQEAAPKVLAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +++ +AYE+N+ I+E P LAR L+K   +N  IPP  +KAVA+++  +Y
Sbjct: 297 LRIKDMAYEYNVMIYENPPLARELYKACEVNDLIPPELFKAVAEVLSFVY 346


>gi|27550054|gb|AAO18037.1| LscU [Photorhabdus luminescens]
          Length = 351

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 176/345 (51%), Gaps = 3/345 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S E    +S++  LI ++   S       S L ++ 
Sbjct: 2   SGEKTEKPTPKKLRDARKKGQVTKSNEVVS-TSLILGLIGMMMVMSEYYLEHLSKLMLIP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A+   +       +  ++ +L      L +P L +  +  + S+  Q   +L+ + +KP 
Sbjct: 61  ANLLDKPF--PQALNHVVENLMQELVYLCLPILSVSALLSLASHFAQYGFLLSGHSIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K+ L+ T++ ++L  N   +L         I  
Sbjct: 119 IKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLVWVTLAGNLQALLYLPECGEKCITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  +    +++ D  + ++Q   +L+MSK EIK E K+S G+P IK+++
Sbjct: 179 VLGMMLTQLMTVCGIGFIVISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M  +   +++I+ NPTH A+ +RY + E   P++  K  +  A ++R+I
Sbjct: 239 RQFHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A E  IP+ +   LAR+L++   I+  IP    +A A+++  +  
Sbjct: 299 AEEEGIPVLQRIPLARALYQDGLIDHYIPADLIQATAEVLRWLEQ 343


>gi|315498431|ref|YP_004087235.1| flagellar biosynthetic protein flhb [Asticcacaulis excentricus CB
           48]
 gi|315416443|gb|ADU13084.1| flagellar biosynthetic protein FlhB [Asticcacaulis excentricus CB
           48]
          Length = 355

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 188/354 (53%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D  ++KTE  S++K+E+A  +G+   S +     S++A    ++ +      S+T 
Sbjct: 1   MA--DEGEDKTEEASARKLEEARKKGDVAKSADVPQALSLIAACALVMLYGDKIALSLTE 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTH-LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L V +A+    +   +      + H L      ++   LL+    G    L Q   + +
Sbjct: 59  TLRVFVAAPHLLRDSLMGDGGLTIAHHLMGQVLPIIALILLVAGAAGAIGSLAQTGLMFS 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +KP F +++   G KR++ ++ L+ F K+ +K+I VG I  + L      +     A
Sbjct: 119 TEKLKPDFSKLNPMAGFKRLFGVDALIQFAKTVIKLIAVGVITWMILKGRAGDVAGLAGA 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P  +L +A      + + + LF+      D      ++  ++KM+K E+KDE KQ+ G+
Sbjct: 179 SPLMVLPYAKEVFFSLAVAVCLFMLLEGGADYFIQKLRFSQRMKMTKTEVKDEYKQTEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R K I   + R +MM    +AT++ITNPTHYA+ALRY   E  AP+ VAKG + +
Sbjct: 239 PHVKGRLKQIRMEKSRQRMMANVPKATVVITNPTHYAVALRYD-EETPAPLCVAKGVDTL 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R++A +H+I I E+P LAR+L+  + ++  IP   ++AVA++I  +  +K
Sbjct: 298 ALKIREVAGDHDIAIVEDPPLARALYAAIDVDEIIPETHFQAVAKIISFVMVRK 351


>gi|166714026|ref|ZP_02245233.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|111146902|gb|AAX40642.2| HrcU [Xanthomonas oryzae pv. oryzicola]
          Length = 357

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +       +  + +   +  
Sbjct: 2   SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L   ++ G+     Q     +L  V P 
Sbjct: 62  DFL--ENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K +L+G ++ + +      ++      P  I  
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLVIKAVLIGVVLWVGIRALMPMIIGLAYETPLDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSILFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E   +A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRERVVKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  AIP   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWV 341


>gi|225850260|ref|YP_002730494.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
 gi|225645107|gb|ACO03293.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
          Length = 349

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ +   KTE  + ++ + A  EG    S++  + +S+L   + +  +       +T 
Sbjct: 1   MAKDPS---KTEKATPRRRQKAREEGQVARSQDIPIAASLLIVAVMMFAYIPFSYNILTE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
             H   ++     + D++     +       + LV+P  L+ +  G+ S ++Q   +L+ 
Sbjct: 58  YFHHTFSNPFHL-IPDLNR--GFIYESVKVLAILVLPFFLILLAIGVFSNVVQFGFLLSG 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++   G+ RI+S+  L   +++ +K++    +    L +      +     
Sbjct: 115 KALVPKIDRLNPVSGLGRIFSMKTLFELVRNLLKLLFASVVAYFLLMKIISESFNMSYLP 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +  +Y  F  +  +++   +    + ++D  +   +    +KMSK EIK+E K   GNP
Sbjct: 175 LNHEIYFLFKYIIMLILAFAVISIPIAIIDFIYRKWEHEENIKMSKHEIKEERKMYEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   +   R     +MM    +A ++ITNP HYA+AL+Y + +  AP ++AKG+N IA
Sbjct: 235 HVKAAIRKKQREIAMMRMMAELPKADVVITNPEHYAVALKYEKGKMAAPKVIAKGKNHIA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++IA +++IP+ E+P LARSL+    I   IP   Y A+A+++ KIY +K
Sbjct: 295 QKIKEIAKKYDIPVVEDPPLARSLYSSCEIGDMIPENLYVAIAKILAKIYRRK 347


>gi|160880828|ref|YP_001559796.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans
           ISDg]
 gi|160429494|gb|ABX43057.1| flagellar biosynthetic protein FlhB [Clostridium phytofermentans
           ISDg]
          Length = 373

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 3/355 (0%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           ++      KTE  ++KK+EDA  EG    S++    S +LA  + +  F           
Sbjct: 18  AKEGPGGEKTEEATTKKLEDARKEGQVARSQDLITASGLLALFMVIKLFSGYIAGGFLDA 77

Query: 62  LHVLLASATQRKLEDISHIVF--LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
                        E++++ +   L+  + ++   + +P  +  ++      + Q    L 
Sbjct: 78  FSKSYKEIETLAKEEMTYQIGSKLMNQMGINILLICLPVFITGVVVAFVVNIFQVKWKLT 137

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P F +++   G K++ S++ ++  +KS +K+ ++  I+  +L +    +      
Sbjct: 138 GKPLQPKFNKINPLSGFKKMLSMDKIMELVKSIIKVGIIIYIVYNALKDELGKLYLLYEM 197

Query: 180 -NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            N   ++ +    V  + I I +    + + D  +   ++   ++M+KQEIKDE KQS G
Sbjct: 198 GNLEVVIAYIGSIVLDLGIKISVLFIVVGLADFIYQKIKFKKDMRMTKQEIKDEFKQSEG 257

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK++ K   R   + +MM+    A ++ITNPTH+A AL+Y +  ++AP+L+AKG +L
Sbjct: 258 DPQIKSKIKQKMRQASQRRMMQRLPEADVVITNPTHFACALKYDKEVSEAPILIAKGADL 317

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+++IA E+ IPI E   LAR L+  V I S IP   Y+ VA+++  +Y  K
Sbjct: 318 LAAKIKEIAKENEIPIVENKPLARMLYYNVDIESEIPGELYQMVAEVLAYVYSLK 372


>gi|295696131|ref|YP_003589369.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912]
 gi|295411733|gb|ADG06225.1| flagellar biosynthetic protein FlhB [Bacillus tusciae DSM 2912]
          Length = 370

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 174/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE P+ ++ ++A  EG A  S + +    +LA ++ +       I      L     
Sbjct: 15  EEKTETPTPRRRQEARKEGQAARSADLTAALVLLAAVLAVRALGETWIDE-WRRLFASFI 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           + +  +       +  +    +     +I  LLL    G+ +  IQ   +       P +
Sbjct: 74  TGSPIQFSTPDGWLAWMGGQVMGVFSSLILFLLLPAAAGLATGFIQVGGLFAFKAASPQW 133

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           KR+S  EG +R++S+ +LV   K  +KI ++G I      + + +       +P ++   
Sbjct: 134 KRISPVEGFRRLFSLRSLVEGAKMILKIAILGGIGYSLARQIFESSGSLGGMDPTALAGW 193

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  V +   L +  L +LD  +    +  +L+M+KQE+K+E K++ GNP IK + +
Sbjct: 194 TGDQLWNVALEASLALLGLAILDAWYQRVSFERQLRMTKQEVKEEFKRTEGNPTIKRKIR 253

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R+  + +MM+   +AT++ITNPTHYA+ALRY     D PV++AKG +  A ++R+ A
Sbjct: 254 ERQRALAQRRMMQEVPKATVVITNPTHYAVALRYEPDSMDTPVVIAKGADAWAWRIRETA 313

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             + +P+ E P LAR L   V I  AIP V ++AVA+++  +Y  +
Sbjct: 314 RHYGVPVVENPPLARRLHAMVEIGEAIPEVLFQAVAEVLAYVYRLR 359


>gi|296447442|ref|ZP_06889367.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium
           OB3b]
 gi|296255062|gb|EFH02164.1| flagellar biosynthetic protein FlhB [Methylosinus trichosporium
           OB3b]
          Length = 358

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 116/349 (33%), Positives = 206/349 (59%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE++  D++TE  S KKI DAL +G  P++R+ ++    L  L+ + F        +  
Sbjct: 1   MSESEDDDSRTEEASEKKILDALEQGKTPVARDVAVAVLFLGFLLCVSFVIETVGPRLAL 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + ++L++  Q  L + +        ++    R + P L +FM+ G+ S  +Q  P L  
Sbjct: 61  SMELMLSNVGQFSLANGADAFMQSRAVAEEIGRFLAPMLSIFMITGLLSAAMQGAPRLVF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S ++G+KRI+ +  +V  +KS  KI ++G  +  SLT +   ++D +   
Sbjct: 121 KRIEPDLSRISPQQGLKRIFGVTGVVELVKSIAKIAVIGGAVVFSLTVDRDLIIDAMRME 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +       + ++  ++ + +  + + D+ WS  +W   ++MS+QE+K+E KQS G+P
Sbjct: 181 PAHLPSLLLKLIIRLTSVVCIPVVLIALADLAWSKFKWRRDMRMSRQEMKEEHKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R +S+A  R R +MM    +AT++I NPTHYA+ALRY++TE  AP +VAKG++L+A
Sbjct: 241 LVKARMRSLALERSRKRMMAQVPQATMVIANPTHYAIALRYVRTEGGAPTVVAKGKDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            K+R+IA  H +P+ E P LAR+++  V ++  IP  FY+ VA+LI+ +
Sbjct: 301 LKIREIAEAHGVPVLERPELARAMYNHVEVDQMIPSEFYRPVAELIHFL 349


>gi|54307250|ref|YP_128270.1| FlhB flagellar biosynthetic protein [Photobacterium profundum SS9]
 gi|46911670|emb|CAG18468.1| Hypothetical FlhB flagellar biosynthetic protein [Photobacterium
           profundum SS9]
          Length = 375

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 182/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSEN +  +KTE PS +K+  A  EGN P S+E       L   + LL  FS  +  +  
Sbjct: 1   MSEN-SSQDKTEQPSQQKLRKAREEGNLPRSKELVTALMTLGAAL-LLSAFSSDLAHMFD 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++  L  +  ++   +   ++  L+    S    + P   L ++  I + +I+    +++
Sbjct: 59  EVATLNLALPKKAAFEPEFMLKHLSFSLTSMIFTISPIFGLLLLVTILANIIRGGWNISV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +P   +++   GIKR++S  +LV  +KS +K+ L+G  +   L+ +   ++      
Sbjct: 119 TAAQPKLSKLNPLSGIKRMFSTKSLVELVKSILKVSLIGGTLYWLLSNHLTQIIALQRLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      + + L    L +  + VL++ ++   +  +LKM+KQE+K+E K S G P
Sbjct: 179 MTEAILQTVDILWQGLFSFGLALLLIAVLELPYAGWDYTKQLKMTKQEVKEEHKNSEGKP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + +   + +M +   +A ++ITNPTHYA+AL+Y   +  AP ++AKG + +A
Sbjct: 239 EVKAKIRQLQQQMSQRQMHKTVPQADVVITNPTHYAIALKYDLDKASAPFVLAKGTDQMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +MRKIA  HN PI E P+L R+++        IP   Y AVA ++  ++  +
Sbjct: 299 LEMRKIARHHNCPIVEIPALTRAVYYSTNEWQEIPAPLYVAVAHILTFVFQME 351


>gi|13472564|ref|NP_104131.1| flagellar biosynthesis protein FlhB [Mesorhizobium loti MAFF303099]
 gi|14023310|dbj|BAB49917.1| flagellar biosynthetic protein; FlhB [Mesorhizobium loti
           MAFF303099]
          Length = 360

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/353 (36%), Positives = 218/353 (61%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+    D+KTE  + KK+ D + +G  P SRE ++ +S +A L++ +F+    + ++  
Sbjct: 1   MSDAADKDSKTEEATEKKVRDTIEQGKLPHSRETAILASFVAILVFTVFYAKDAVINLGM 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L + L       +   + ++ L   + L   R V+  L+L  + GIG+ ++Q +P    
Sbjct: 61  FLSMFLEKPEAWPMNTETDVIDLYKIVMLEVGRAVVSLLVLLTVAGIGASVLQNMPQFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S+ +G  R++     V F+KS  K+     ++T +L+E++  +L  +  N
Sbjct: 121 ERIRPQLSRISITKGWNRMFGAQGWVEFLKSLAKVGFAIAVLTFTLSEDHSKLLAGMITN 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +           +L+ I+  +  +  +DI WS   W   L+M+KQE+KDE KQS G+P
Sbjct: 181 PVAFGLVIRGIAVDILVAIVFVMGLIAAIDIVWSRFHWKQDLRMTKQEVKDEFKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K+R +S+AR R R +MM A  RAT+II NPTH+++AL+Y++ E+ AP++VAKGQ+L+A
Sbjct: 241 IVKSRLRSLARDRARKRMMTAVPRATLIIANPTHFSIALKYVRDEDSAPLVVAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA EHNIPIFE+ +LARS++KQV +++ IP  FY+AVA+L+  +Y KK
Sbjct: 301 LKIREIAKEHNIPIFEDVALARSMYKQVSVDNVIPSQFYQAVAELVRIVYSKK 353


>gi|311030112|ref|ZP_07708202.1| flagellar biosynthesis protein FlhB [Bacillus sp. m3-13]
          Length = 362

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 176/347 (50%), Gaps = 1/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE  + KK +D   +G    S + +    ++A  + L F   P +   T  L    
Sbjct: 13  SGEKTEKATPKKKQDTRKKGQVAKSADVNTSFVLIAVFLCL-FAIGPWMKDETLKLFEHS 71

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                 +   +  +  +   L +    ++ P +L  ++  + +  +Q  P+ +   +   
Sbjct: 72  FRVYLLEEVTVQKVHMIFLELIMQLIWIIGPIMLAALLGAVIANYLQVGPLFSTEAIHMK 131

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             ++   +G KRIYS+  +V  +KS +KI+ VG I    L  +   +L     N H    
Sbjct: 132 LNKLDPIQGFKRIYSVRAIVELVKSMLKIVFVGIITFSILWMSLEEVLILSQKNLHEAFA 191

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  ++ +     +  L++ D  +  + +   ++MSK ++KDE K++ G+P+IK++ 
Sbjct: 192 FLGTLTVRMGLFAGGALLFLSIFDYLYQKYDYEKNIRMSKHDVKDEYKKAEGDPLIKSKI 251

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   R     +MM+   +A +IITNPTH+A+AL+Y +++ DAP+++AKG + +AKK+++ 
Sbjct: 252 KQKQREMAMQRMMQDVPQADVIITNPTHFAIALKYDESKGDAPIVLAKGVDYVAKKIKEK 311

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EHNI   E   LARSL+ Q  I  AIP  F++AVA+++  +Y  +
Sbjct: 312 AKEHNIVTVENKPLARSLYSQAEIGDAIPEEFFQAVAEILAYVYRLQ 358


>gi|254228241|ref|ZP_04921670.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25]
 gi|262394130|ref|YP_003285984.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25]
 gi|151939314|gb|EDN58143.1| type III secretion protein, YscU/HrpY family [Vibrio sp. Ex25]
 gi|262337724|gb|ACY51519.1| type III secretion inner membrane protein HrpY [Vibrio sp. Ex25]
          Length = 351

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 176/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KK+ DA  +G    S+E    + ILA +I L F F+    S  S L +L 
Sbjct: 2   SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVL-FAFADYYMSHISALILLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   +V +   ++   + L+ P +L+  +  I S + Q   + +   VKP 
Sbjct: 61  SKLAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N   ++   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWLTLRGNINALMQIPTCGLECVPT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK+++
Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMIAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  +P+ ++  LAR+L+    ++  IP    +A A+++  +
Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWL 341


>gi|323139657|ref|ZP_08074699.1| type III secretion exporter [Methylocystis sp. ATCC 49242]
 gi|322395089|gb|EFX97648.1| type III secretion exporter [Methylocystis sp. ATCC 49242]
          Length = 356

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 114/349 (32%), Positives = 201/349 (57%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+D P+++TE  + KKI D + +G  P SR+      I A L    F        +  
Sbjct: 1   MSESDDPESRTEEATEKKIRDTVEQGKLPSSRDVGTAFGIFALLGAFSFLVDALTPRLIE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +L+A+  +  L   +     ++ ++L   R + P LL F++ G+ +   Q  P    
Sbjct: 61  ALGLLIANVGELPLRSGADAYRYVSVVNLELGRYLGPILLGFVIAGLVASFTQGAPQFVF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + V+P   R+S+  G KRI+ +  +V  +KS VK+I+VG  +  +   ++  ++D +  +
Sbjct: 121 DRVQPDLSRISIIAGWKRIFGLAGVVELLKSVVKMIIVGGAVIFAGLSDHAALVDAMRTD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +       +  +  ++ + +  L   D  W+  +W   L+MS+QE+K+E KQ+ G+P
Sbjct: 181 PSRLPGLTLRLIIHLTSVVAISVGVLAAADFVWARFKWRRDLRMSRQELKEEFKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R +S+A  R R +MM +   AT ++ NPTHYA+ALRY++ E  AP+++AKG++LIA
Sbjct: 241 LVKARMRSLAMDRSRRRMMASVPNATFVVANPTHYAIALRYVREEGGAPLVLAKGKDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            K+R+IA  +N+P+FE+  LAR+++  V ++  IP  FY+ VA+LI+ +
Sbjct: 301 LKIREIAERNNVPVFEKKELARAMYDMVEVDRMIPAEFYRPVAELIHFL 349


>gi|51246526|ref|YP_066410.1| flagellar biosynthesis protein FlhB [Desulfotalea psychrophila
           LSv54]
 gi|50877563|emb|CAG37403.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea
           psychrophila LSv54]
          Length = 355

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 175/354 (49%), Gaps = 3/354 (0%)

Query: 1   MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E       +TE  SSK+ ED   +G    S+E    +     L++  F+       + 
Sbjct: 1   MAEEAPTGGERTEDASSKRREDFRKKGQVAQSKEVQTAALFTLLLLFWSFYIGIFGRKLL 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             +  +  S         S  + L   +    + ++ P  LL ++ GI S   Q   +  
Sbjct: 61  ILIQSIWQSLESFS-PTPSQTMQLALFVIKECAIILAPLFLLVVIVGIASSFFQIGWLFT 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P F +++   G  R +S  + +  +KS  K+ L+G +   ++ E++   L     
Sbjct: 120 TKPLSPDFSKMNPIAGFGRFFSKKSFIEVIKSLSKVTLIGWLAFSTIIEHFNEALVQTDT 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P + L     T   ++  +   +  L  +D  +   +   K+KM+KQE K+E K+S G+
Sbjct: 180 SPMATLVFIGVTASLIVAKVCAILILLAFIDFLYVKWEMEEKMKMTKQEQKEEFKESEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK++ ++I +   R +MM     A +IITNPTH ++ALRY   ++ AP++VAKG + +
Sbjct: 240 PHIKSQIRAIQQEMARKRMMADVPGADVIITNPTHISIALRYRAGQDQAPIIVAKGVDFV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+IA E++IPI E P +AR L K + I  ++P   +  VA+++  +Y  K
Sbjct: 300 AMKIREIARENSIPIIENPPVARMLHK-IEIGGSVPEEMFAVVAEILAHVYSLK 352


>gi|260438787|ref|ZP_05792603.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM
           2876]
 gi|292808776|gb|EFF67981.1| flagellar biosynthetic protein FlhB [Butyrivibrio crossotus DSM
           2876]
          Length = 370

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 99/358 (27%), Positives = 182/358 (50%), Gaps = 6/358 (1%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           +++     +TE  ++KK++DA  +G    SR+ +   S+L   I L  +         ++
Sbjct: 10  AKDGPGGQRTEPATAKKLKDARKKGQVAKSRDLTSSVSLLVFFIILKIYVGTMGTKFINE 69

Query: 62  LHVLLA-----SATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
             V+       +AT  +L  +S      ++   L    +++P +   ++      L+Q  
Sbjct: 70  FKVIYKKMGEVNATSLELNSLSRFFKNYMSDAILDMLVILLPIMAAAVLVAFVGDLVQVK 129

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
                  +KP   + +   GIKRI+S+  LV  +KS   + +   +    L +    + +
Sbjct: 130 WKPTAEPMKPKADKFNPVNGIKRIFSVKTLVQLLKSIAIVAICMLVTYNKLKKEIGLLYN 189

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
           F + +  + +      +  V I I +    + + D  + Y ++ + +KMSKQE+KDE K 
Sbjct: 190 FYNISLEAAIIRMGDVLLDVGITISVIYLIVGIADFIFEYVKFKNDMKMSKQELKDEWKD 249

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + GNP +KN+QK       R +MM+A   A ++ITNPTH+A+AL+Y Q    APV+VAKG
Sbjct: 250 TEGNPEVKNQQKRRMNEASRRRMMQAVPEADVVITNPTHFAVALKYEQNSGKAPVVVAKG 309

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ +A+K+++ A ++ + I E   LAR L+  V + S IP   Y+AVA+++  ++  K
Sbjct: 310 EDYLAQKIKETARKNQVEIVENKPLARMLYYNVDLGSEIPQELYQAVAEVLAFVWKVK 367


>gi|223038713|ref|ZP_03609006.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267]
 gi|222880115|gb|EEF15203.1| flagellar biosynthetic protein FlhB [Campylobacter rectus RM3267]
          Length = 358

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 193/353 (54%), Gaps = 10/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL---IYLLFFFSPGIYS 57
           M+  D    KTE P+SKKIEDA  +GN P S++ + F +I   +   + LL F     + 
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARKDGNVPKSQDLAGFVTIAVAIFVVVALLGFIKDQFFM 58

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           + +    L+     RKL     I+ +   L      +++P  +   + G+ + L+Q   +
Sbjct: 59  LYNYYQDLIGQEFTRKLLFSVTIITIFRTLL-----IILPIAVCIAIAGVFANLMQFGFI 113

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                ++P+  +++  +G+K ++S+  L++ +K  +K+  V T+  +        +   +
Sbjct: 114 FTTKPLEPNLNKINPLKGLKNLFSLKKLIDGIKMILKVTAVFTVGFLMFLSFIKELPHTL 173

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             +  + L      +  +  ++L+ +  + +LD+     Q++  L+MSKQEIKDE KQ  
Sbjct: 174 FFSMAAQLAWLKEKMLILAAVMLIVMFIIGLLDVLIVRFQYFRDLRMSKQEIKDEYKQME 233

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P +K R + +     R++MM+   +A +IITNPTHYA+ALRY +T+  APV++AKG +
Sbjct: 234 GDPQVKGRIRQLQMRAARNRMMQNIPQADVIITNPTHYAVALRYDKTKEKAPVILAKGVD 293

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +A ++++I  ++N+ I E P LAR L+K   +N  IP   ++AVA+++  +Y
Sbjct: 294 FLALRIKQIGVQNNVKIVENPPLARELYKMCEVNDMIPAELFRAVAEVLSFVY 346


>gi|237755398|ref|ZP_04584025.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692439|gb|EEP61420.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 350

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 182/353 (51%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE  + K+ + A  EG    S + S+ +S+    I L+F+       +  
Sbjct: 1   MAKDP---RKTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLVG 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 ++      ++ S  ++    +    + L +P +L+  + GI S +IQ   +  L
Sbjct: 58  YFKYTFSNPLYLIPDNGSMFIWFTLKI---LAILTLPVILILFIVGIASNVIQFGFLFTL 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++++  GIKRI+S+  L   +K+  K+ +   +    +       L +++ +
Sbjct: 115 KPLTPKLDKLNVISGIKRIFSLTVLFELIKNLAKLTVALFLSYFLVKYLLNDFLVYMTGS 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            ++ +Y    T+  +++        + + D  +  +++   LKM+K E+K+E K   GNP
Sbjct: 175 INNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSYEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K   +   R     +M+    +A ++ITNP HYA+AL+Y + +  AP ++AKGQ+LIA
Sbjct: 235 LVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVIAKGQDLIA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K++++A EH I I E+P LAR+L+    I   IP   Y+AVA+++ +IY  K
Sbjct: 295 QKIKEVAKEHGIKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKAK 347


>gi|27381988|ref|NP_773517.1| flagellar biosynthesis protein FlhB [Bradyrhizobium japonicum USDA
           110]
 gi|27355158|dbj|BAC52142.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 361

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 125/353 (35%), Positives = 210/353 (59%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE P+ KK+ D+L +G  P+SREAS+F+S+ A ++  +F    G+  +T 
Sbjct: 1   MAETTDQESKTEEPTEKKVRDSLEQGKIPVSREASIFASMAALMVIQMFLIGQGVQQLTP 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL       L   +    LLT + L A R ++P L++ ++FG+ S L+Q  P L L
Sbjct: 61  TLKSLLDDPEGFPLATGADAQNLLTVVGLEALRFLVPLLVVLLVFGLASSLLQNAPNLVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+S   G  R++    LV F KS  K+  V  ++   L  +     + +  +
Sbjct: 121 QRIMPDLSRISPVSGWNRLFGTQGLVEFAKSLFKLASVTVVVAFVLRSSEAKAFEAMYTD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++         +++  I +    L  +D+ W+   W  +L+M++QEIKDE KQ+ G+P
Sbjct: 181 PVALPEMILNIAMRIVSAICIATIVLVAIDLAWARFHWRRELRMTRQEIKDEHKQAEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R +S+AR R R +M+ + SRAT++I NPTH+A+ALRY + EN AP++VAKG ++IA
Sbjct: 241 LVKARLRSLARDRSRQRMIASASRATLVIANPTHFAIALRYNREENPAPLVVAKGMDVIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A ++ IP+ E   LAR+L++ V ++  IP  F++ VA++IY +  K+
Sbjct: 301 LKIREVAEKNRIPVIENKVLARALYEAVQVDQVIPAEFFRPVAEIIYFLQSKQ 353


>gi|148976240|ref|ZP_01812964.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
 gi|145964334|gb|EDK29589.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
          Length = 379

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 181/353 (51%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++    +K+E PS  K+  A  EG  P ++E     ++++ + Y +      I     
Sbjct: 1   MSDHQDSGDKSEQPSQHKLTKARREGQVPRAKEFVSSITLISVVAYYVLNV-DMIKQSFI 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L ++      + +     IV L+     S   L  P L+  M+  I    +    + + 
Sbjct: 60  ELFLVSFHFDSQTVSQPMAIVELVGTALFSMITLFFPLLIYQMIAAIVGSTLLGGWIFSP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P ++++S  +G+KRI+S  ++V   K+ +K+ L  T++   ++     + + +SA+
Sbjct: 120 SLLIPKWEKISPLKGLKRIFSSQSIVELFKNVIKVSLFFTLLYWVISSYISVITNLVSAH 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +++        + L  +LL +    + D  +  H++  ++KM+KQE+KDE K+  G P
Sbjct: 180 FDTVVLSVATITIEYLGYLLLIVLLFGLFDFPYQRHEFTKQMKMTKQEVKDEHKEQEGRP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I     +    E   +A++++TNPT YA+AL Y  ++ +AP +VAKGQ+ +A
Sbjct: 240 EVKARIRQIQTQNAKRSANERVPKASVVLTNPTRYAIALIYDLSQAEAPFVVAKGQDDVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A +H + I E P+L R+++    I+  +P   + A+A ++  +   K
Sbjct: 300 LYIRELAAKHEVEIVESPALTRAIYNTTQIDQMVPNQLFIAIAHILTYVNQLK 352


>gi|323210683|gb|EFZ95561.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 338

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 164/306 (53%)

Query: 48  LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
           ++F    +    + +         R + D + I+  +  L  +A   ++P +   ++  +
Sbjct: 1   MWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVAL 60

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
            S ++    + +   ++P F +++   GIKR++S       +K+ +K  LVG +    L 
Sbjct: 61  ISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLW 120

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
            N+  M+  ++ +P   + +A   V    ++++L +  +   D+ +       KL+MS+Q
Sbjct: 121 HNWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQ 180

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           +I+DE K+S G+P +K + + + R+  + +MME   +A +I+TNPTHY++AL+Y + +  
Sbjct: 181 DIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMS 240

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AP +VAKG  LIA ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++ 
Sbjct: 241 APKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLA 300

Query: 348 KIYHKK 353
            ++  K
Sbjct: 301 WVWQLK 306


>gi|295706267|ref|YP_003599342.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319]
 gi|294803926|gb|ADF40992.1| flagellar biosynthetic protein FlhB [Bacillus megaterium DSM 319]
          Length = 360

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 98/346 (28%), Positives = 178/346 (51%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D+  +G    S++ +    +L   +Y LF     +  +   L     
Sbjct: 13  GEKTEKATPKKKQDSRKKGQVAKSQDVTTALILLMVFLYFLFGAKQFLQQMMKLLREAFQ 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +    ++     +  +  HL  S +    P +L   +  +G+  +Q   + +   ++P  
Sbjct: 73  TYMLEEV-TAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQPKL 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           ++++   G KRI+++  LV  +KS +KI+ +G +    L  +   +L+    +    L  
Sbjct: 132 EKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFILWIHIEDVLNLSQKSIGDSLVV 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V ++ +   L +  L++LD  +    +   ++MSKQ+IKDE K   G+P+IK++ K
Sbjct: 192 LSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLIKSKIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K++ IA
Sbjct: 252 QKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQKIKGIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             H I + E   LAR+LF Q  +  A+P  F+KAVA+++  +Y  +
Sbjct: 312 KSHEIIMVENRPLARALFDQTKVGDAVPEEFFKAVAEILAYVYRIQ 357


>gi|299069778|emb|CBJ41057.1| flagellar export pore protein [Ralstonia solanacearum CMR15]
          Length = 387

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 174/355 (49%), Gaps = 7/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D+   KTE  S++++E A  EG+ P SRE   F  +      L         S+  
Sbjct: 1   MSE-DSDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLATGAGGLWVMG----ESIVR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118
                LA   +    D +       ++      L  V+ GL+L ++    S L      +
Sbjct: 56  TAASFLARCLEFHRYDYTRAQEQWHYVGAQFGPLATVLAGLVLMLVLAALSPLALTRGAI 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   V P   R+    G+KR++S+  L+   +   K++L+G +    +       ++   
Sbjct: 116 SFKPVTPDITRLLGMHGLKRMFSVQGLLELPRLLAKLVLLGGVGWWLILHYRDDFVELPR 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  + +           + +   +  +  +D+  +  Q+  K +M+K+E++ E ++S G
Sbjct: 176 QDLIAGMRDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG ++
Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPAALYAAVAEVLAYVYQLR 350


>gi|219854407|ref|YP_002471529.1| hypothetical protein CKR_1064 [Clostridium kluyveri NBRC 12016]
 gi|219568131|dbj|BAH06115.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 609

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 190/348 (54%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + +K  DA  +G  P S+E +L  ++LA  + +L         V + +   
Sbjct: 264 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVILALGGYVGSQVKTTMITF 323

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +     L D + +  +        + + +P  +  ++ G+ +   Q   ++  + +KP
Sbjct: 324 FNNYLVMSL-DYASVQKITFITLWRLAIIFLPVAVPILVMGVLANFFQTRGLVTSHPLKP 382

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F +++   G KR++S+ +++  +KS   I +VG I    + +NY  ++   S N  SI+
Sbjct: 383 DFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLSSLNFESIV 442

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + + +  + ++D  +   Q+   L+MSKQE+K+E KQ  G+P IK++
Sbjct: 443 KAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDEGDPQIKSK 502

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+L+A +++K
Sbjct: 503 IKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQDLVALRIKK 561

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A + ++PI E P LAR ++K+V ++  IP   Y+AVA+++  +Y  +
Sbjct: 562 VAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 609


>gi|167630310|ref|YP_001680809.1| flagellar biosynthetic protein flhb, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593050|gb|ABZ84798.1| flagellar biosynthetic protein flhb, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 362

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 185/346 (53%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P++K+  +A  +G    S+E +    +L   + L       +  +   +  LL 
Sbjct: 14  GEKTEKPTAKRRSEARKKGQVAKSQEVNTALILLFGFLALRSLGVQTMDGMERMMVYLLG 73

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           + T  ++  +S ++   T +++    ++ P +L  M  G+ +  +Q   + +   +K ++
Sbjct: 74  TVTLEEVTPVS-VITTGTTIAIRTMLMIAPFMLAAMAAGLLASYLQVGFLFSSEGLKMNW 132

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            ++++  G+K I+S  +LV  +KS +K+ ++  +   ++ ++       +  +  + +  
Sbjct: 133 GKLNVIAGLKNIFSSRSLVELVKSLLKVSVISYVAYSAVVKHLHLFPKLLGMDVQTAVAA 192

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  V   + + +  +  LD G+ +++    LKMSKQE+KDE KQ+ G+P IK++ K
Sbjct: 193 ISEVAYDVGFRVAVLLLLVAALDYGYQWYKHEESLKMSKQEVKDEFKQAEGDPQIKSKIK 252

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A ++ITNPTH+A+AL+Y      APV++AKGQ+ +A K+R +A
Sbjct: 253 QRMREMAMRRMMQELPKADVVITNPTHFAVALKYESGSMTAPVVIAKGQDYVALKIRAVA 312

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +H IP+ E+  LAR+L++ V I   IP   ++AVA++   +Y  K
Sbjct: 313 QDHGIPLVEDKPLARTLYRAVEIGQEIPAELFQAVAEVFAFVYRLK 358


>gi|168334564|ref|ZP_02692720.1| flagellar biosynthetic protein FlhB [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 366

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 175/350 (50%), Gaps = 2/350 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE  +SKK  D   +G    S E +    +LA  I +       +   ++    +
Sbjct: 14  EQEGRTETATSKKRSDVRKKGQVVKSAELNTALILLAFFIIMRILAPYYVSQCSNVFKNI 73

Query: 66  LASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           +A      +E +  H + ++    ++   +     ++  +    +   Q    + L  +K
Sbjct: 74  MAQMRTIVVEFNKQHFLHIIRDSLINIILINGILFIVLFLVAFLASYWQVGFKVTLEPLK 133

Query: 125 PSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           P   + +   G K+I+ I  +L+  +K+  K+I++GT+   ++     + L F      +
Sbjct: 134 PKLNKFNPVNGFKKIFGIRDSLIELLKNLFKVIILGTVFYNTIISQIPSFLGFYDLTIQN 193

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I  +    +R++   + L    L   D  W  +++   +KM+K ++K+E KQS G+P +K
Sbjct: 194 IAIYVADVIRQIGTNVGLAFLVLAYGDYRWQKYKFEDSIKMTKHDVKEEFKQSEGDPAVK 253

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++ +   R     +MM+    A +IITNPTH+A+A+ Y + +  APV+VAKG + +A+++
Sbjct: 254 SKIRQKMREMSISRMMKTVPEADVIITNPTHFAVAIYYDRVKGIAPVVVAKGTDNMAQRI 313

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++IA   N+ I E   LAR+L+  V I SAIP   Y+AVA+++  +Y  +
Sbjct: 314 KEIAAISNVQIVENKPLARALYYTVDIGSAIPQELYEAVAEVLAFVYRLE 363


>gi|258514018|ref|YP_003190240.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777723|gb|ACV61617.1| flagellar biosynthetic protein FlhB [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 354

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 193/353 (54%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+       KTE  + +K+  A  +G    S + +    +LA ++         + S+  
Sbjct: 1   MA--QGGQEKTEKATPRKLLQARRKGQVAKSSDLNAAVLMLAVVLLFYSIKQQQLSSMYK 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                LA+ TQ +   +S ++ L+   S+   +L+ P L++ ++  +    +Q   V + 
Sbjct: 59  YFSWYLANFTQYRESQVS-LMQLMVSFSIYYIKLMAPVLIVVVIVALLINFMQVGLVFSS 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  KR +  EG KRI+++ +LV   K+  K++++G I    ++  +  +L    A 
Sbjct: 118 ESIKPQLKRANPIEGFKRIFTVRSLVELAKNIFKLLVIGGITYNLISGRFNELLLIFYAT 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  I       + ++L    +    + +LD  +  +++   ++MSKQ+IKDE KQ+ G+P
Sbjct: 178 PAMIFQTVSGFILRILGWGGIVYFAMALLDYLYQRYEFQKSMRMSKQDIKDEYKQTEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K++ + + R     ++ E   RAT+++TNPTH+A+ALRY + + D P++ AKG + +A
Sbjct: 238 LLKSKLREMQRKMSLSRIREEMPRATVVVTNPTHFAVALRYSEGDADVPLVTAKGADYLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +MR++A E+N+P+ E+  LAR L+ +V + + IP   Y++VA+++  +Y KK
Sbjct: 298 LRMREMAKEYNVPVIEQRELARLLYDRVEVGTEIPYELYQSVAEILAMVYKKK 350


>gi|51894124|ref|YP_076815.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857813|dbj|BAD41971.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 361

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 2/346 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            +TE P+ ++++ A  EG    S +      ++A  + L       +  VT  +     +
Sbjct: 8   ERTEEPTPRRLQKAREEGRVARSTDLVAGLGLVAATLALRGLGGYSVQQVTGGMVGAFET 67

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               +L        ++   +L   R V+P  L+ +  G+ +  +Q   +  L  + P F 
Sbjct: 68  LRPLEL-TPETTAAVMQDWALIGLRAVLPIALVVVAIGVVAGTLQTRFIFTLRALVPRFA 126

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+ RI+S+  +   +K  +K+  +G I   S+        + I+    + L   
Sbjct: 127 TLNPITGLTRIFSLRTVTELVKGLIKLAAIGYIAYRSVRGLVPQFPNLIAQTVPAGLSAI 186

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V  V++ + L    + VLD G+ Y ++   ++M+KQE+K E ++  G P +K+RQ+ 
Sbjct: 187 ADMVLDVMLAVGLAYLVVGVLDYGYQYWEFRRSMRMTKQEVKQEHREQEGAPELKSRQRQ 246

Query: 249 IARSRIR-HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
             R      + ++    A +++TNPTH+A+AL+Y   +++AP +VAKG +L+A +++KIA
Sbjct: 247 RMRELAMRRRALKEVPGADVVVTNPTHFAVALKYEAAKDEAPRVVAKGADLLALEIQKIA 306

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             H++P+ E  +LAR L+  V +   IPP +Y+AVA+++  +Y+ +
Sbjct: 307 RAHDVPLVENRTLARGLYYDVEVGRLIPPEYYQAVAEVLAFVYNLR 352


>gi|153831633|ref|ZP_01984300.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
 gi|148872143|gb|EDL70960.1| flagellar biosynthetic protein FlhB [Vibrio harveyi HY01]
          Length = 375

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +  +KTE  S +K++ A  EG  P ++E +     LA  ++        I+   S
Sbjct: 1   MSEQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQL-NSIWESMS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T+  LE    +V  L         +++P   + ++   GS ++    +   
Sbjct: 59  GVFRYNMTLTKADLESPKQLVEHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +V P   +++   GIKRI+S  +LV  +KS  K++++  I+   L  +   +L   +  
Sbjct: 119 ANVMPKLSKLNPISGIKRIFSTRSLVELVKSTFKVLVIFGILYGYLDNHLQPLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    VLDI +   +   +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351


>gi|330447934|ref|ZP_08311582.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492125|dbj|GAA06079.1| flagellar biosynthetic protein FlhB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 375

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS   +  +KTE  + +KI  A  +G  P +++ +  +  +A +++  F     I+ V +
Sbjct: 1   MS-QSSAQDKTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVFFYFQI-DVIWQVLN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  + +   L      +  L        +L++P   L  +  I S L+    +   
Sbjct: 59  SVFQLNMTISHDDLRSPWLAIEALGTSLAIIIQLLLPLFALIFITAIASSLLLGGWLFYP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P   ++    GIKR++S  +LV  +KS +K+ ++  ++ + L  N   +L   +  
Sbjct: 119 AGVLPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDVNLSRLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   ++++ + +    ++DI +   +   +LKM+KQE+K+E K + GNP
Sbjct: 179 LKQGVSLIMTILFHGILLMGVALFIFGLIDIPYQKWEHAKELKMTKQELKEEFKTNEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I +   R K+ +A  +A ++I NPTHYA+A++Y  T ++AP +VAKG +  A
Sbjct: 239 EIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAPFVVAKGIDEAA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             ++ IA +H++ I   P L R+++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQTIAKQHDVEILRSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351


>gi|269960154|ref|ZP_06174530.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3]
 gi|269835125|gb|EEZ89208.1| flagellar biosynthetic protein [Vibrio harveyi 1DA3]
          Length = 375

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +  +KTE  S +K++ A  EG  P ++E +     LA  ++        I+   S
Sbjct: 1   MSEQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQL-NSIWESMS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T+  LE+   +V  L         +++P   + ++   GS ++    +   
Sbjct: 59  GVFRYNMTLTKADLENPKQLVEHLGQSLAVIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +V P   +++   GIKRI+S  ++V  +KS VK++++  I+   L  +   +L   +  
Sbjct: 119 ANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYLDNHLQPLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    V+DI +   +   +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351


>gi|269967242|ref|ZP_06181306.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
 gi|262284522|gb|ACY41059.1| VscU [Vibrio alginolyticus]
 gi|269828098|gb|EEZ82368.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
          Length = 349

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 176/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KK+ DA  +G    S+E    + ILA +I L F F+    S  S L +L 
Sbjct: 2   SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVL-FAFADYYMSHISALILLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  +D   +V +   ++   + L+ P +L+  +  I S + Q   + +   VKP 
Sbjct: 61  SKLAYQGFQD--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N   ++   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK+++
Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  +P+ ++  LAR+L+    ++  IP    +A A+++  +
Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWL 341


>gi|182418459|ref|ZP_02949753.1| fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium butyricum 5521]
 gi|237666957|ref|ZP_04526942.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377841|gb|EDT75385.1| fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium butyricum 5521]
 gi|237658156|gb|EEP55711.1| flagellar biosynthetic protein FliR/FlhB [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 612

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/349 (30%), Positives = 184/349 (52%), Gaps = 2/349 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  D+  +G    S++ S+  +++ C I +   ++  I      +   
Sbjct: 264 ASDDKTEEATPKKKSDSRKKGQIARSKDVSVALTMVVCTIAVSACWNMMINGFKEVMIYF 323

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L        + +S    L+T +   A  L+ P  L  M+ GI + L+Q   ++    +KP
Sbjct: 324 LQLPMLDNFDKLSLTGILITVIMRVAYGLL-PIALPIMVGGIIASLMQTGFLITGEPLKP 382

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           SFK+++   GIK + S  ++V+  K+ V I +V  I    ++ NY  ++   +    S+ 
Sbjct: 383 SFKKLNPLSGIKNMISKRSIVDLCKNLVVISIVSIISYRYISSNYQKIISMSNIYIPSLN 442

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 V  +   I + +  +  +D    +      LKM+KQE+KDE KQ  G+P +K +
Sbjct: 443 VEIKTLVLDIFKQICIALIVIAAIDYFVQFKMHNKDLKMTKQEVKDEYKQQEGDPQLKGK 502

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT-ENDAPVLVAKGQNLIAKKMR 304
            K   R   R +MM++ S AT++ITNPTH A+AL+Y +  + +AP ++AKG + +A K++
Sbjct: 503 IKQKQREMSRQRMMQSVSDATVVITNPTHLAIALKYEEGTDMEAPKVLAKGTDYLALKIK 562

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA E+ IPI E   LAR ++ +V I++ IPP  Y+ VA+++  +   K
Sbjct: 563 SIAKENEIPIIENKPLARMMYDKVEIDNDIPPELYQGVAEILAIVMKIK 611


>gi|62317075|ref|YP_222928.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 1 str.
           9-941]
 gi|83269068|ref|YP_418359.1| flagellar biosynthesis protein FlhB [Brucella melitensis biovar
           Abortus 2308]
 gi|189022341|ref|YP_001932082.1| flagellar biosynthesis protein FlhB [Brucella abortus S19]
 gi|237816636|ref|ZP_04595628.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A]
 gi|254698362|ref|ZP_05160190.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731807|ref|ZP_05190385.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 4 str.
           292]
 gi|260544314|ref|ZP_05820135.1| type III secretion exporter [Brucella abortus NCTC 8038]
 gi|260759573|ref|ZP_05871921.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str.
           292]
 gi|260762817|ref|ZP_05875149.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62197268|gb|AAX75567.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 1 str.
           9-941]
 gi|82939342|emb|CAJ12286.1| Type III secretion exporter:Flagellar biosynthetic protein FlhB
           [Brucella melitensis biovar Abortus 2308]
 gi|189020915|gb|ACD73636.1| Type III secretion exporter [Brucella abortus S19]
 gi|237787449|gb|EEP61665.1| flagellar biosynthetic protein FlhB [Brucella abortus str. 2308 A]
 gi|260097585|gb|EEW81459.1| type III secretion exporter [Brucella abortus NCTC 8038]
 gi|260669891|gb|EEX56831.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 4 str.
           292]
 gi|260673238|gb|EEX60059.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 356

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 206/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DA ++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDAQDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|17989459|ref|NP_542092.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str.
           16M]
 gi|148558113|ref|YP_001257188.1| flagellar biosynthesis protein FlhB [Brucella ovis ATCC 25840]
 gi|163844317|ref|YP_001621972.1| flagellar biosynthesis protein FlhB [Brucella suis ATCC 23445]
 gi|225628598|ref|ZP_03786632.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo]
 gi|225685983|ref|YP_002733955.1| flagellar biosynthesis protein FlhB [Brucella melitensis ATCC
           23457]
 gi|254699432|ref|ZP_05161260.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 5 str. 513]
 gi|254706322|ref|ZP_05168150.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis
           M163/99/10]
 gi|254711387|ref|ZP_05173198.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis B2/94]
 gi|256014911|ref|YP_003104920.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|256029983|ref|ZP_05443597.1| flagellar biosynthesis protein FlhB [Brucella pinnipedialis
           M292/94/1]
 gi|256043043|ref|ZP_05445988.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256059636|ref|ZP_05449833.1| flagellar biosynthesis protein FlhB [Brucella neotomae 5K33]
 gi|256111971|ref|ZP_05452922.1| flagellar biosynthesis protein FlhB [Brucella melitensis bv. 3 str.
           Ether]
 gi|256262893|ref|ZP_05465425.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9]
 gi|260564276|ref|ZP_05834761.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M]
 gi|261313768|ref|ZP_05952965.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M163/99/10]
 gi|261318993|ref|ZP_05958190.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94]
 gi|261323606|ref|ZP_05962803.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33]
 gi|261749883|ref|ZP_05993592.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513]
 gi|265987004|ref|ZP_06099561.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M292/94/1]
 gi|265989482|ref|ZP_06102039.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993419|ref|ZP_06105976.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str.
           Ether]
 gi|17985338|gb|AAL54356.1| flagellar biosynthetic protein flhb [Brucella melitensis bv. 1 str.
           16M]
 gi|148369398|gb|ABQ62270.1| flagellar biosynthetic protein FlhB [Brucella ovis ATCC 25840]
 gi|163675040|gb|ABY39150.1| flagellar biosynthetic protein FlhB [Brucella suis ATCC 23445]
 gi|225616444|gb|EEH13492.1| flagellar biosynthetic protein FlhB [Brucella ceti str. Cudo]
 gi|225642088|gb|ACO02001.1| flagellar biosynthetic protein FlhB [Brucella melitensis ATCC
           23457]
 gi|255997571|gb|ACU49258.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|260151919|gb|EEW87012.1| type III secretion exporter [Brucella melitensis bv. 1 str. 16M]
 gi|261298216|gb|EEY01713.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis B2/94]
 gi|261299586|gb|EEY03083.1| flagellar biosynthetic protein FlhB [Brucella neotomae 5K33]
 gi|261302794|gb|EEY06291.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M163/99/10]
 gi|261739636|gb|EEY27562.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 5 str. 513]
 gi|262764289|gb|EEZ10321.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000151|gb|EEZ12841.1| flagellar biosynthetic protein FlhB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092730|gb|EEZ16939.1| type III secretion exporter [Brucella melitensis bv. 2 str. 63/9]
 gi|264659201|gb|EEZ29462.1| flagellar biosynthetic protein FlhB [Brucella pinnipedialis
           M292/94/1]
 gi|326410307|gb|ADZ67371.1| flagellar biosynthesis protein FlhB [Brucella melitensis M28]
 gi|326553600|gb|ADZ88239.1| flagellar biosynthesis protein FlhB [Brucella melitensis M5-90]
          Length = 356

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|153953791|ref|YP_001394556.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           kluyveri DSM 555]
 gi|146346672|gb|EDK33208.1| Fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium kluyveri DSM 555]
          Length = 606

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 190/348 (54%), Gaps = 2/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + +K  DA  +G  P S+E +L  ++LA  + +L         V + +   
Sbjct: 261 ASDDKTEEATPRKKSDARKKGQIPKSKEIALALTLLASTLVILALGGYVGSQVKTTMITF 320

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             +     L D + +  +        + + +P  +  ++ G+ +   Q   ++  + +KP
Sbjct: 321 FNNYLVMSL-DYASVQKITFITLWRLAIIFLPVAVPILVMGVLANFFQTRGLVTSHPLKP 379

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F +++   G KR++S+ +++  +KS   I +VG I    + +NY  ++   S N  SI+
Sbjct: 380 DFSKLNPINGFKRMFSMRSVMELLKSLSIITIVGIIGVKFVKDNYLYIMTLSSLNFESIV 439

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    +   + + +  + ++D  +   Q+   L+MSKQE+K+E KQ  G+P IK++
Sbjct: 440 KAISKLTVNIFFRVAMIMIIIAIIDYIFQIFQYNKDLRMSKQEVKEEYKQDEGDPQIKSK 499

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K   R     +MM+   +AT+++TNPTH A+AL+Y + +N APV+ AKGQ+L+A +++K
Sbjct: 500 IKQKQREMAMRRMMQEVPKATVVVTNPTHVAVALKYEENQN-APVVSAKGQDLVALRIKK 558

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A + ++PI E P LAR ++K+V ++  IP   Y+AVA+++  +Y  +
Sbjct: 559 VAKDCDVPIIENPPLARLIYKEVDLDKEIPMEMYQAVAEVLALVYKMR 606


>gi|254695264|ref|ZP_05157092.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215629|ref|ZP_05929910.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917236|gb|EEX84097.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 3 str.
           Tulya]
          Length = 356

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 208/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+  +    L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRSEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|170748134|ref|YP_001754394.1| flagellar biosynthesis protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654656|gb|ACB23711.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 353

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 209/353 (59%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+   ++KTEA S KKI DA+ EGN P SREA +F+SIL  LI+L+F           
Sbjct: 1   MSED--RESKTEAASEKKISDAIAEGNTPFSREAPVFASILGLLIFLVFVARDQGLPFVQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L ++L       +E     + L+  L+L   R ++P L++ +  GI + + Q  P + +
Sbjct: 59  RLALILEQPRNFSVETRHDAMRLVHALALEMGRFLLPVLIILLAAGITASIFQNAPRVVI 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P + R+S   G  R++S+   + F KS  K   +G +  + L  +   +++ +  +
Sbjct: 119 DRIQPKWSRISPVTGWNRLFSLQGFIEFGKSLFKFFAIGGMSYMVLHADRHEIVNVMFVD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +         +++  + +    L   D+ W+  +W   L+MS+QE+KDE KQ  G+P
Sbjct: 179 PVGLPEFLLTLSVRLVSAVSVATIALVAGDLVWTRLRWQRDLRMSRQEVKDEFKQLEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K + +S+A+ R+R +MM A  RAT+I+ NPTHYA+ALRY Q+ENDAP+++AKG +LIA
Sbjct: 239 LVKAKMRSLAQDRLRKQMMAAVPRATMILANPTHYAIALRYDQSENDAPMVLAKGADLIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A +H I +  + +L R+++  V IN AIP  FY+AVA L+  +  +K
Sbjct: 299 LRIRELAEKHRIEVVVDKALTRAMYDHVEINQAIPAEFYRAVANLLVYVMTRK 351


>gi|297584054|ref|YP_003699834.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens
           MLS10]
 gi|297142511|gb|ADH99268.1| flagellar biosynthetic protein FlhB [Bacillus selenitireducens
           MLS10]
          Length = 359

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 173/349 (49%), Gaps = 3/349 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK  ++ N+G    S + +    ++   +   F     +  + + +   + 
Sbjct: 12  QEKTEKATPKKKRESRNKGQVAKSTDVNTAFILMFVFLMFFFAGPFMVDQMLTIVRFTME 71

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 +   +++  +       A+  V P +L  ++ G+ +  +Q   +     VK   
Sbjct: 72  EYLLMDV-TPANVQPMFIDYIFQAAVAVAPVMLASVIAGVFANYVQVGVLFAPEAVKFKL 130

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           ++++  +G KRI+SI  LV F+KS +KI+LVG +  I +      +L             
Sbjct: 131 EKINPLKGFKRIFSIRALVEFLKSMMKIVLVGGVTGIVIWLYMDDLLKIGLYAVEDAAVL 190

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  + + +   +  L +LD  +  + +   ++MSKQ++KDE K++ G+P+IK++ K
Sbjct: 191 IGTLIIFMGLAVGFLLIFLAILDYMYQKYDFEKNIRMSKQDVKDEYKKTEGDPLIKSKIK 250

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A ++ITNPTHYA+AL+Y     +APV+VAKG + +A K+  IA
Sbjct: 251 EKQRQMAMSRMMQEVPKADVVITNPTHYAIALKYDADNMEAPVIVAKGVDYVALKLINIA 310

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY--HKKI 354
             + +   E   LAR+L+ Q  I   +P   +KAVA+++  +Y   KKI
Sbjct: 311 KNNEVLTAENRPLARALYAQADIGDQVPEDLFKAVAEVLAYVYRIQKKI 359


>gi|256256624|ref|ZP_05462160.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 9 str.
           C68]
 gi|260882866|ref|ZP_05894480.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str.
           C68]
 gi|297249980|ref|ZP_06933681.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str.
           B3196]
 gi|260872394|gb|EEX79463.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 9 str.
           C68]
 gi|297173849|gb|EFH33213.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 5 str.
           B3196]
          Length = 356

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|254228807|ref|ZP_04922230.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262396474|ref|YP_003288327.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
 gi|151938754|gb|EDN57589.1| flagellar biosynthetic protein FlhB [Vibrio sp. Ex25]
 gi|262340068|gb|ACY53862.1| flagellar biosynthesis protein FlhB [Vibrio sp. Ex25]
          Length = 375

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 173/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+  +  +KTE  S +K++ A  EG  P ++E +     LA  +Y        I+   S
Sbjct: 1   MSDQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVALYFYSQL-NSIWESMS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       T+  LE+   +V  L         +++P   + ++   GS L+    +   
Sbjct: 59  GIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +V P   +++   GIKRI+S  ++V  +KS  K+ ++  I+   L  +   +L   +  
Sbjct: 119 ANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYLDNHLQPLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    V+DI +   +   +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLVMSILFEGLLLMGFALLLFGVVDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A +IITNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351


>gi|256158147|ref|ZP_05456063.1| flagellar biosynthesis protein FlhB [Brucella ceti M490/95/1]
 gi|256252902|ref|ZP_05458438.1| flagellar biosynthesis protein FlhB [Brucella ceti B1/94]
 gi|261219990|ref|ZP_05934271.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94]
 gi|265996665|ref|ZP_06109222.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1]
 gi|260918574|gb|EEX85227.1| flagellar biosynthetic protein FlhB [Brucella ceti B1/94]
 gi|262550962|gb|EEZ07123.1| flagellar biosynthetic protein FlhB [Brucella ceti M490/95/1]
          Length = 356

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 125/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   EN APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNENAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|91223202|ref|ZP_01258468.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
 gi|269967109|ref|ZP_06181176.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B]
 gi|91192015|gb|EAS78278.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
 gi|269828246|gb|EEZ82513.1| flagellar biosynthetic protein [Vibrio alginolyticus 40B]
          Length = 375

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 173/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+  +  +KTE  S +K++ A  EG  P ++E +     LA  +Y        I+   S
Sbjct: 1   MSDQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVALYFYSQL-NSIWESMS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       T+  LE+   +V  L         +++P   + ++   GS L+    +   
Sbjct: 59  GIFRYNMMLTRADLENPKQLVEQLGQSLAVIIDMLLPLFTVIIIVTCGSSLVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +V P   +++   GIKRI+S  ++V  +KS  K+ ++  I+   L  +   +L   +  
Sbjct: 119 ANVMPKLSKINPLSGIKRIFSTRSVVELLKSTFKVAVIFGILYGYLDNHLQPLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    V+DI +   +   +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A +IITNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVIITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351


>gi|294853145|ref|ZP_06793817.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026]
 gi|294818800|gb|EFG35800.1| flagellar biosynthetic protein FlhB [Brucella sp. NVSL 07-0026]
          Length = 356

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIADFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|156976193|ref|YP_001447099.1| flagellar biosynthesis pathway, component FlhB [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527787|gb|ABU72872.1| hypothetical protein VIBHAR_04964 [Vibrio harveyi ATCC BAA-1116]
          Length = 375

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +  +KTE  S +K++ A  EG  P ++E +     LA  ++        I+   S
Sbjct: 1   MSEQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFLAVAMFFYSQL-NSIWESMS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T+  LE+   +V  L         +++P   + ++   GS ++    +   
Sbjct: 59  GVFRYNMTLTKADLENPKQLVEHLGQSLAVIIEMLLPLFTVIIIVAFGSSMVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +V P   +++   GIKRI+S  ++V  +KS VK++++  I+   L  +   +L   +  
Sbjct: 119 ANVLPKLSKLNPISGIKRIFSTRSVVELVKSTVKVLVIFGILYGYLDNHLQPLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    VLDI +   +   +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVLDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEHSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351


>gi|23499885|ref|NP_699325.1| flagellar biosynthesis protein FlhB [Brucella suis 1330]
 gi|161620208|ref|YP_001594094.1| flagellar biosynthesis protein FlhB [Brucella canis ATCC 23365]
 gi|254702550|ref|ZP_05164378.1| flagellar biosynthesis protein FlhB [Brucella suis bv. 3 str. 686]
 gi|260568543|ref|ZP_05839012.1| type III secretion exporter [Brucella suis bv. 4 str. 40]
 gi|261753127|ref|ZP_05996836.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686]
 gi|23463460|gb|AAN33330.1| flagellar biosynthetic protein FlhB [Brucella suis 1330]
 gi|161337019|gb|ABX63323.1| flagellar biosynthetic protein FlhB [Brucella canis ATCC 23365]
 gi|260155208|gb|EEW90289.1| type III secretion exporter [Brucella suis bv. 4 str. 40]
 gi|261742880|gb|EEY30806.1| flagellar biosynthetic protein FlhB [Brucella suis bv. 3 str. 686]
          Length = 356

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDHMIAPEFYKAVAELIRIINTRR 353


>gi|146296299|ref|YP_001180070.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409875|gb|ABP66879.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 366

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 103/344 (29%), Positives = 188/344 (54%), Gaps = 1/344 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KTE  + +K ++A   G    SRE +   ++L  +++L F +S  ++ + S       + 
Sbjct: 16  KTEKATPRKRQEARKRGMVAKSREVTSAFALLISVLFLKFGYSLFVHPLQSYGKYFFGN- 74

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
               +EDI+    L + +     +LV+P  ++ M         Q   ++    +K SF++
Sbjct: 75  LNYNIEDIADASRLFSAIITITLKLVLPFCIVIMFMTALVEWAQSGFLITSESLKVSFQK 134

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           ++  EG KRI+SIN++V  +KS +KI+++G    +S       +L+    +  SI+  +F
Sbjct: 135 INPIEGFKRIFSINSVVELIKSILKILIIGYTGYLSTKTFAGKLLEMYDMSLISIVKFSF 194

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
            +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ GNP IK+R +  
Sbjct: 195 DSTINLILWMSIMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEGNPQIKSRIRER 254

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ IA+K+++ A +
Sbjct: 255 QRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDYIAQKIKEEAKK 314

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + I I E   LA+SL+    +   IPP  Y AVA+++  +Y  K
Sbjct: 315 YKIEIVENKELAQSLYNMCEVGDFIPPELYHAVAEVLAYVYSLK 358


>gi|289523553|ref|ZP_06440407.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503245|gb|EFD24409.1| flagellar biosynthetic protein FlhB [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 367

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 170/347 (48%), Gaps = 2/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  + ++   A  EG    S +     +IL  ++ LLF     ++S      V   
Sbjct: 16  EEKTEPATPRRRRKAREEGQVAKSMDLVSSVAILTGVL-LLFAMGFFLFSTLKQFFVWEL 74

Query: 68  SATQRKLEDISHIVFLLTHLSLSA-SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           S     +      ++  +   L+   +   P  +L  +  +     Q   ++    + P 
Sbjct: 75  SHLSDDVNFRGQWIWRASARGLAVYLKTWFPLAILSALGVVLISFAQVGFLITPKPLVPK 134

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             R++   G+K++ S+ +LV  +K  +K  L+ +++   L ++  T+L  +       L 
Sbjct: 135 LNRLNPVSGLKKVLSLRSLVELIKGLLKATLLASVLYFGLKKSLETLLLTMQMPLSGGLG 194

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
               T+  + + + + +  + + D  +   ++   +KMS+QEIK+E KQ  G+P +K R 
Sbjct: 195 ILSKTILNLSLKMAIALFAIAIFDYAYQKWEFERSIKMSRQEIKEEFKQLEGDPQLKRRI 254

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R   R +MM    +A ++ITNPT  A+A+ Y +   DAPV++AKG  ++A K+R+ 
Sbjct: 255 RQRQRELARRRMMAEVKKADVVITNPTRIAVAILYDKKIMDAPVVIAKGLGVVAGKIREE 314

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A +++IP+ + P LA +L+  V I   IP   YKAVA+++  +Y  K
Sbjct: 315 AIKYDIPLVQRPPLAWTLYNNVEIGEKIPEELYKAVAEILVFVYRLK 361


>gi|170683079|ref|YP_001742349.1| flagellar biosynthesis protein FlhB [Escherichia coli SMS-3-5]
 gi|170520797|gb|ACB18975.1| lateral flagellar export/assembly protein LfhB [Escherichia coli
           SMS-3-5]
          Length = 379

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAINDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|288962718|ref|YP_003453012.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288914984|dbj|BAI76468.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 359

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/354 (31%), Positives = 193/354 (54%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D  + KTE P+ K++ +A  +G+ P +R+  L S+++A  + +L        ++++
Sbjct: 1   MAEQDD-EQKTEEPTEKRLREAAEKGDVPRARDVGLLSAMVAAWMIVLMAAPGVASNLSA 59

Query: 61  DLHVLLASATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  L+ +    +++  +  ++  L  L    +  ++P L + ++  + S L Q   V+ 
Sbjct: 60  LLLPLIENPDDIRIDGGAIDVIHSLAWLIGGVAVALLPVLGILLVGAVVSALGQGPFVVA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++P +  +S   G KR+     LV F KS VK+ ++      +L        D +  
Sbjct: 120 SDRIRPKWSHLSPAAGWKRMAGRPALVEFAKSLVKLAIISAAAWRALAPYIAWTEDTVGM 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +   +         ++L+ +LL    +  +D+ W+  +W  +L+MS QEIKDE KQ  G+
Sbjct: 180 DVAGLPNLLRDVTLRLLLAVLLATVLMAAVDVLWNRLEWRRRLRMSPQEIKDEFKQIEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P  K R + I RSR + +MM    RAT++ITNPTH+A+AL Y +    AP+ +AKG +LI
Sbjct: 240 PNAKARLRDIRRSRSKKRMMANVPRATVVITNPTHFAVALEYERGRTAAPICLAKGADLI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R +A EH IPI E P LAR+L  Q  +++AIP   Y+AVA++I  +   K
Sbjct: 300 ALRIRALAQEHGIPIVENPPLARALHAQAEVDAAIPLQHYQAVAEVITYVLKLK 353


>gi|260574396|ref|ZP_05842400.1| type III secretion exporter [Rhodobacter sp. SW2]
 gi|259023292|gb|EEW26584.1| type III secretion exporter [Rhodobacter sp. SW2]
          Length = 361

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 166/349 (47%), Gaps = 1/349 (0%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS+  D    K   PS ++++ A  +G  P S + S  ++    L+  +      +  + 
Sbjct: 1   MSDGEDDSAEKEHEPSQRRLDQAREKGQIPRSTDLSTAAAYGGLLLAAVALGEGSLRRIG 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
               VLL  + +     ++     L  L ++    V P  LL  +    +   QR  + +
Sbjct: 61  DSAAVLLDQSDRLSALMLTGGTAPLGGLLIAIGWAVAPFFLLPALAVFLAVFAQRAFIFS 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + + P   R+S  E  K  +  N L  F KSFVK++++  I+ + L +N   +L  +  
Sbjct: 121 PDKLMPKLSRISPIESAKNKFGRNGLFEFAKSFVKLLVISVILGMFLMQNMDDVLGALYL 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P S        V + L ++L+    +  LD  W   +   + +MS++++ DE K+S G+
Sbjct: 181 EPASATLVLLRLVVQFLFLVLIIATAIGALDYLWQRSEHLRRNRMSRKDMMDEHKESEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P  K +++        ++M+   + A +I+ NPTHYA+AL++ +    APV VAKG + I
Sbjct: 241 PHSKAQRRQRGYDIATNRMLADVATADVIVVNPTHYAVALKWDRAAKRAPVCVAKGVDEI 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A ++R+ A E  +P+  +P  AR+L   V +   I P  Y+AVA  I  
Sbjct: 301 AARIRERAAEAGVPMHRDPPTARALHASVEVGQEIRPEQYRAVAAAIRF 349


>gi|323191512|gb|EFZ76773.1| flhB HrpN YscU SpaS family protein [Escherichia coli RN587/1]
          Length = 379

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|306846305|ref|ZP_07478866.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1]
 gi|306273300|gb|EFM55169.1| flagellar biosynthetic protein FlhB [Brucella sp. BO1]
          Length = 356

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 208/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPIFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRKNVVRLLVANVLTIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R RH+M+ A   AT+I+ NPTH+++ALRY   E+ APV++AKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARHRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVIAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAVSHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|293408345|ref|ZP_06652184.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471523|gb|EFF14006.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 379

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALFSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      +LD+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|91224467|ref|ZP_01259729.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
 gi|91190809|gb|EAS77076.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
          Length = 349

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 176/343 (51%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KK+ DA  +G    S+E    + ILA +I L F F+    S  S L +L 
Sbjct: 2   SAEKTEQPTAKKLRDARQKGQVAKSQEIVSSALILALIIVL-FAFADYYMSHISALILLP 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +    +  ++   +V +   ++   + L+ P +L+  +  I S + Q   + +   VKP 
Sbjct: 61  SKLAYQGFQE--ALVDVAIAIAKEIAYLLAPIILVAALVAIFSNMGQFGFLFSGESVKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+S+ +++ F+KS +K+ L+  II ++L  N   ++   +     +  
Sbjct: 119 IKKINPVEGAKRIFSLKSVIEFIKSILKVSLLSCIIWVTLRGNINALMQIPTCGLECVPT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +++++I+  +    +   D  +       KLKMSK E+K E K+  G+P IK+++
Sbjct: 179 ITGVMIKQLMIISSVGFIVIAAADFAYQKFDHTKKLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +        E   R+ +++TNPTH A+ L Y + E   PV+     + +AK+M  I
Sbjct: 239 RQLHQELQASNQRENVKRSNVLVTNPTHIAVGLYYKKGETPLPVITLMETDAVAKRMVAI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  +P+ ++  LAR+L+    ++  IP    +A A+++  +
Sbjct: 299 AKEEGVPVMQKVPLARALYADGNVDQYIPSDLIEATAEVLRWL 341


>gi|292493584|ref|YP_003529023.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4]
 gi|291582179|gb|ADE16636.1| flagellar biosynthetic protein FlhB [Nitrosococcus halophilus Nc4]
          Length = 377

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+ +   +TE P+ K+ ++A  +G  P SRE S    +L+  + LL      +  +  
Sbjct: 1   MAES-SAQERTEQPTPKRQQEAREKGQVPRSRELSTTVLLLSSALGLLLMGEFFLQGLAE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    + ++ + +  +         A + + P L L ++  + + L+      + 
Sbjct: 60  LMRQGLR-LERAQIFEPAAAILQFQQALWEALKTITPFLFLTLIAALAAPLLMGGWSFSF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   ++++   +G+KR++     +  +K+  K +L+G I  +        ++      
Sbjct: 119 QALGFKWEKLDPLKGMKRVFGPQGWMELLKALAKFLLLGGIACVLFWYLGPDLIALGRQG 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               LY     +    + +   +  +  +D  + +     +LKM+ QEIK+E K++ G+P
Sbjct: 179 LIPALYQLAHLMGWSFLGLSASLVLIAAIDAPFQHWHHTRQLKMTHQEIKEEHKETEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     +MM A  +A +++TNPTHYA+AL Y Q +  AP +VAKG + +A
Sbjct: 239 ELKARVRRVQREIAGRRMMAAVPQANVVVTNPTHYAVALDYQQDKGGAPRVVAKGADQVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R +A  +N+P+   PSL+R+L+    +N  IP   Y AVAQ++  ++  +
Sbjct: 299 LKIRAVAAANNVPVLSAPSLSRALYYNTELNQEIPAGLYVAVAQVLAYVFQLR 351


>gi|104782805|ref|YP_609303.1| flagellar biosynthesis protein FlhB [Pseudomonas entomophila L48]
 gi|95111792|emb|CAK16516.1| flagellar biosynthetic protein FlhB [Pseudomonas entomophila L48]
          Length = 380

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 100/354 (28%), Positives = 181/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++  +KTE P+ K+  DA  +G    S+E +  +  LA    LL F      ++ +
Sbjct: 1   MAESESGQDKTEEPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGQMAETLMT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T+  + D   +   L      A   V P ++L  +    + +     + + 
Sbjct: 61  LMRANF-TLTREVIVDERSMGAFLLASGKMAIWSVQPVMILLFVISFVAPIALGGFLFSG 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++P F R++   GIKR++S++ L   +K+  K +++  +  + L  +   +L   +  
Sbjct: 120 SLLQPKFSRMNPLAGIKRMFSLHALTELLKAIAKFLVILVVALVVLASDRQALLSIANEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + HA   V    + +   +  +   D+ +   Q + KLKM+KQE++DE K S G P
Sbjct: 180 LEQAVIHAVQVVGWSALWMAAGLLLIAAADVPFQLWQAHKKLKMTKQEVRDEYKDSEGKP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND-APVLVAKGQNLI 299
            +K R + + R   + +MM A   A +IITNPTHYA+AL+Y   +   AP+L+AKG + +
Sbjct: 240 EVKQRIRQLQREASQRRMMAAVPEADVIITNPTHYAVALQYDPEKGGAAPLLLAKGTDFL 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A KMR+I  EH + I E P+LAR+++    +   IP   Y AVAQ++  ++  +
Sbjct: 300 ALKMREIGVEHKVQILESPALARAIYYSTELEEEIPAGLYLAVAQVLAYVFQIR 353


>gi|294500921|ref|YP_003564621.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551]
 gi|294350858|gb|ADE71187.1| flagellar biosynthetic protein FlhB [Bacillus megaterium QM B1551]
          Length = 360

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 98/346 (28%), Positives = 178/346 (51%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D+  +G    S++ +    +L   +Y LF     +  +   L     
Sbjct: 13  GEKTEKATPKKKQDSRKKGQVAKSQDVTTALILLMVFLYFLFGAKQFLQQMMKLLREAFQ 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +    ++     +  +  HL  S +    P +L   +  +G+  +Q   + +   ++P  
Sbjct: 73  TYMLEEV-TAERVFAMFKHLLPSIALAAGPVMLAAFIAALGANYMQVGILFSTEALQPKL 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           ++++   G KRI+++  LV  +KS +KI+ +G +    L  +   +L+    +    L  
Sbjct: 132 EKINPISGAKRIFAMRALVELIKSTLKIMCIGAVTFFILWIHIEDVLNLSQKSIGDSLVV 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V ++ +   L +  L++LD  +    +   ++MSKQ+IKDE K   G+P+IK++ K
Sbjct: 192 LSKLVFQMGLAASLMLLFLSLLDYLYQKFDFEKNIRMSKQDIKDEHKNIEGDPLIKSKIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+   +A +IITNPTHYA+AL+Y + + DAP +VA G + IA+K++ IA
Sbjct: 252 QKQREMAMSRMMQEVPKADVIITNPTHYAIALKYDEEKMDAPYVVASGVDFIAQKIKGIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             H I + E   LAR+LF Q  +  A+P  F+KAVA+++  +Y  +
Sbjct: 312 KSHEIIMVENRRLARALFDQTKVGDAVPEEFFKAVAEILAYVYRIQ 357


>gi|224370771|ref|YP_002604935.1| FlhB2 [Desulfobacterium autotrophicum HRM2]
 gi|223693488|gb|ACN16771.1| FlhB2 [Desulfobacterium autotrophicum HRM2]
          Length = 357

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 179/354 (50%), Gaps = 2/354 (0%)

Query: 1   MSENDAPD-NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E+      KTE  SSKK+E A  EG    S E      +LA ++ L  F       + 
Sbjct: 1   MAEDPGGGGEKTEGASSKKLEKAREEGQVAKSTEVPSVVVLLAGVLALNAFAFFIYQRLI 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L S T   L +   +V LL   +     ++ P LL   +  + S + Q   VL+
Sbjct: 61  LVLQDGL-SFTGIPLSNDVAVVHLLFVATQRLFIILGPLLLAVFVAALVSNIFQVGFVLS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              V P F R+   +G  + +S   L+ F+KS +KI ++  +  + +      ++     
Sbjct: 120 WKAVAPKFSRIDPIKGFAQKFSSRALMEFLKSILKIAIIFGVTYMVVKSEVENIIRLYDH 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              +IL +      ++ I ++L +A L  +D  +   ++    KM+KQE+KDE KQ+ G+
Sbjct: 180 GVAAILLYVLKVSLEIFIKVILVMAVLAAIDFAFQRWKFMEDQKMTKQEVKDEHKQAEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R + +  +  R +MM     A +++TNPT  A+A+RY     +AP +VAKG   +
Sbjct: 240 PQVKARIRQLQATAARKRMMSDVPEADVVVTNPTRLAIAIRYDGMTMNAPTIVAKGAGAV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +R+IA E N+P+ E  +LAR+L+K V +   +P   ++AVA+L+ ++Y  K
Sbjct: 300 AANIRRIAEESNVPLVENKALARNLYKIVEVGQEVPTEEFQAVAELLAQVYKLK 353


>gi|294665988|ref|ZP_06731251.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604236|gb|EFF47624.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 357

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +          + + + +  
Sbjct: 2   SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFSDHMRALMTIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P 
Sbjct: 62  DFP--ENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K ++S+ +L+N +K  +K IL+G ++   +      ++      P  I  
Sbjct: 120 FDSLNPATGVKNLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341


>gi|306813328|ref|ZP_07447521.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
 gi|305854091|gb|EFM54530.1| flagellar biosynthesis protein FlhB [Escherichia coli NC101]
          Length = 379

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPQVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|28901400|ref|NP_801055.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835995|ref|ZP_01988662.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|260362954|ref|ZP_05775823.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|260880241|ref|ZP_05892596.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|260895358|ref|ZP_05903854.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|260901183|ref|ZP_05909578.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|28809947|dbj|BAC62888.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750749|gb|EDM61494.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|308085557|gb|EFO35252.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           Peru-466]
 gi|308091839|gb|EFO41534.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AN-5034]
 gi|308109328|gb|EFO46868.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ4037]
 gi|308112104|gb|EFO49644.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus K5030]
 gi|328469334|gb|EGF40280.1| flagellar biosynthetic protein [Vibrio parahaemolyticus 10329]
          Length = 375

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+  +  +KTE  S +K++ A  EG  P ++E +     +A  +Y        I+    
Sbjct: 1   MSDQ-SSQDKTEKASPQKVKKARQEGQIPRAKEFTTAVIFMAVALYFYSQI-NSIWESMF 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S T+  LE+   +V  +         +++P   + ++   GS ++    +   
Sbjct: 59  GIFRYNMSLTKADLENPQQMVEQVGQSLGMIIEMLLPLFTVIIIVTFGSSMVLGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++ P   +++   GIKRI+S  +LV  +KS +K+ ++  I+   L  +   +L   +  
Sbjct: 119 ANMLPKLSKLNPLSGIKRIFSTRSLVELVKSTIKVTVIFGILYGYLDNHLQPLLGIQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +         + + L+++   +    V+DI +   +   +L+M+KQE+K+E K + G P
Sbjct: 179 LNQGFSMVMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTHYA+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHYAVALKYEPSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENQVEIINSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVLQLK 351


>gi|327254528|gb|EGE66144.1| flhB HrpN YscU SpaS family protein [Escherichia coli STEC_7v]
          Length = 379

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K   K ++V  ++ ISL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|78355426|ref|YP_386875.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217831|gb|ABB37180.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 357

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M + D    +TE  + K+   A  EGN P S+E       +A  I L  +       +  
Sbjct: 1   MPQQDPS--RTEQATPKRRRKARGEGNVPKSQEVPKTFVTMAGTIALYVYMDHIASEMMG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  +A   +      +  LL  +S   + +++P +L   +       +Q   +   
Sbjct: 59  LYEHFFRNAVMFE-ATPQAVYDLLLWISGKLALMLLPIMLFLALVAYVVIRLQVGKLWAP 117

Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              KP F R +L +G+KR++ S   L+   KS +   ++G    I +       L    A
Sbjct: 118 KVFKPKFARFNLIKGLKRLFISPQTLIRLGKSILMAAVIGIAPYIVIRNEMHHFLPLFYA 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P +I  +      K++   +L +  + + D+ ++   +   LKM+K E+KDE KQ+ G+
Sbjct: 178 TPTAIGVYMLEMGMKMVKYAMLPMLVIAIADLWYTRWDYEENLKMTKDEVKDERKQAEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K +Q+      +  +M+E   +A +++TNPTHYA+ALRY   E  APV++AKG + +
Sbjct: 238 PAVKAQQRQKMMEVMAQRMLENVPKADVVVTNPTHYAVALRYDAVEAPAPVVLAKGVDHL 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A++++++A EH +PI E   LAR+L++QV +   IP   Y+AVA L+  +   K
Sbjct: 298 AERIKEVAREHRVPIRENVPLARALYRQVEVGDMIPEELYQAVASLLASLMKFK 351


>gi|156933534|ref|YP_001437450.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531788|gb|ABU76614.1| hypothetical protein ESA_01354 [Cronobacter sakazakii ATCC BAA-894]
          Length = 348

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 164/316 (51%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
             +L   + +++     +    + +           + D   +V  ++ L   A   ++P
Sbjct: 1   MLMLLVGVAVIWVGGSLLARQLAAMLSHGLHFDHSIINDPKLVVGQISFLIKQALMALVP 60

Query: 98  GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            ++  ++  + + ++    + N   V    ++++   GIKRI+S  +L   +K+ +K +L
Sbjct: 61  LIMGVVIVALFAPMLLGGLLFNPKAVAFKPEKLNPLPGIKRIFSSQSLAELLKAILKSVL 120

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           VG +  + L  N+  ++  IS +P + + +A   V    I+I++ +  +   D+ W    
Sbjct: 121 VGIVTGVFLWYNWPDIMRLISESPIAAMRNALNLVALCCILIVMGLVPMVGFDVFWQIVS 180

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
              KL+MS+Q+I+DE K   G+P +K R +   R   R +MM    +A +I+ NPTHY++
Sbjct: 181 HTKKLRMSRQDIRDEFKNQEGDPHVKGRIRQQQREAARRRMMADIPKADVIVNNPTHYSV 240

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL+Y + +  AP +VAKG  L+A ++R+I  EH IP+ E P LAR+L++   I   IP  
Sbjct: 241 ALQYDENKMSAPKVVAKGAGLVALRIREIGNEHRIPMLEAPPLARALYRHAEIGQQIPGQ 300

Query: 338 FYKAVAQLIYKIYHKK 353
            Y AVA+++  ++  K
Sbjct: 301 LYAAVAEVLAWVWQLK 316


>gi|325288792|ref|YP_004264973.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964193|gb|ADY54972.1| flagellar biosynthetic protein FlhB [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 355

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 176/348 (50%), Gaps = 3/348 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           DA   K    + K+ ++A  +G    S+E +    +LA +  L F+    +      +  
Sbjct: 2   DAIAEKRFPATPKRKQEARKKGQVLKSQELTSSIMLLAMIGVLRFWLPSVLERFADLMKY 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           + +  T+     ++    L+ +++  A++++ P LL  +   +    IQ   + +   + 
Sbjct: 62  VYSLPTEWSNISVAS---LMLNMTWQAAQILAPVLLTTVAVAVAVNYIQVGSLFSTEAIM 118

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P   R+SL EG KR++ +   +   KS +K+I +G  +   + ++          N    
Sbjct: 119 PKLSRLSLIEGAKRMFGVRAWIQLAKSLLKVIAIGYFLYAVIRDHLEMFPALQQINALQA 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                  + ++   I      +++LD  + + ++   L+MS +EIK+E KQ+ G+P +KN
Sbjct: 179 TMFLGEILFELAWKIATAFLLISILDFLYQWWEYEKNLRMSHEEIKEEYKQNEGDPQLKN 238

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
             K   R+    +MME   +A ++ITNPTHYA+AL+Y   + DAP +VAKGQ+ +A +++
Sbjct: 239 EMKKRQRAVAMRRMMEDLKKADVVITNPTHYAVALKYDPQKFDAPYVVAKGQDQVALRIK 298

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           + A E+ I + E   LAR+L+ QV I  A+P   YKAVA+++  +   
Sbjct: 299 ETARENRIIMMENKPLARTLYTQVEIGQAVPAELYKAVAEVLAFVMKM 346


>gi|121601720|ref|YP_989412.1| flagellar biosynthesis protein FlhB [Bartonella bacilliformis
           KC583]
 gi|120613897|gb|ABM44498.1| flagellar biosynthetic protein FlhB [Bartonella bacilliformis
           KC583]
          Length = 356

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 116/355 (32%), Positives = 199/355 (56%), Gaps = 1/355 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS E    +++TE P+  KI  A  +GN P SRE  + +S+++  +  +F   P + +++
Sbjct: 1   MSDEKPDKESQTEEPTEHKIHKAEEKGNLPFSRELPILASLMSFSLITIFVAFPAMSNLS 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L       +     +  L+  +  +    +   L++  +  I +  IQ  P + 
Sbjct: 61  RFLTEWLERPESWHINTAEDVKHLIYLVGGNLGLALAALLIIIPLISIAASAIQNAPRIV 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P + R+S   G  RI+     + F+KS VK+I V  I+ I   +N    ++ +  
Sbjct: 121 TERISPKWSRISPANGFGRIFGKAGFIEFLKSLVKLIGVSIIVYIMFFKNNTIFINALLT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  ++  +    +  + +  ++ +A +   D+ WS   W  +L+M+KQE+KDE K   GN
Sbjct: 181 DAPALPEYIRQKLVDLSLSFIVAVAIIAGFDLAWSRFYWRQQLRMTKQEVKDEYKNLEGN 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K+R +S+AR RIR KM+     AT+I+TNPTH+++ALRY    + APV++AKGQ+++
Sbjct: 241 PMVKSRMRSLARDRIRRKMIANVPTATLIVTNPTHFSVALRYKPPLDHAPVVIAKGQDIL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A  +R+IA +H+IPI E+  LAR+L+KQV ++  IPP FY+ VA LI  I  +KI
Sbjct: 301 ALHIREIATKHDIPIIEDQPLARALYKQVEVDQTIPPEFYEGVAALIRFINSQKI 355


>gi|300936100|ref|ZP_07151041.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           21-1]
 gi|300458749|gb|EFK22242.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           21-1]
          Length = 379

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPDVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K   K ++V  ++ ISL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTAKSVVVLVMLWISLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|159024053|gb|ABW87281.1| HrcU [Xanthomonas fuscans subsp. fuscans]
          Length = 357

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +          + + + +  
Sbjct: 2   SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFADHMRALMTIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P 
Sbjct: 62  DFP--ENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I  
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341


>gi|188494712|ref|ZP_03001982.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
 gi|188489911|gb|EDU65014.1| flagellar biosynthetic protein FlhB [Escherichia coli 53638]
          Length = 379

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      +LD+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|315180495|gb|ADT87409.1| flagellar biosynthetic protein [Vibrio furnissii NCTC 11218]
          Length = 372

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           +  +KTE  SS+K++ A  +G    S+E S    ++ C+ Y  +  +  +      L  +
Sbjct: 2   SSGDKTEQASSQKLDKARKQGQIARSKEFSSAIMLMVCIGYF-YANADSLSGHFMQLFEV 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
               T     D  HI+ L+T       ++  P ++   +    +  +      NL+ + P
Sbjct: 61  SFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFHFNLSLLAP 120

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F +++   GIKRI+S   LV F+K+  KI L+  ++   ++ N+  +   + A+  + +
Sbjct: 121 KFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSLVRASFQTTI 180

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           + +   V ++L M++L      V+DI +    + +++KM+KQE+K E K+  G P IK+R
Sbjct: 181 HFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQEGRPEIKSR 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + I     R    +    A +++ NPTH+A+AL+Y  T+ +AP +VAKG+N +A  +R 
Sbjct: 241 IRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGKNEVAFYIRT 300

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A +H + +   P + RS++    +N  IP   + AVAQ++  +   K
Sbjct: 301 LAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQILKYVQQLK 348


>gi|170021382|ref|YP_001726336.1| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739]
 gi|169756310|gb|ACA79009.1| type III secretion exporter [Escherichia coli ATCC 8739]
          Length = 379

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPQVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      +LD+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|331645394|ref|ZP_08346498.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
 gi|331045556|gb|EGI17682.1| flagellar biosynthetic protein FlhB [Escherichia coli M605]
          Length = 379

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q+ + +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQQ-INNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLS 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ ISL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWISLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      +LD+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  +   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVATENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|218703503|ref|YP_002411022.1| flagellar biosynthesis protein FlhB [Escherichia coli UMN026]
 gi|293403334|ref|ZP_06647425.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378945|ref|ZP_06988826.1| type III secretion protein SctU [Escherichia coli FVEC1302]
 gi|300898063|ref|ZP_07116432.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           198-1]
 gi|218430600|emb|CAR11466.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia
           coli UMN026]
 gi|291429187|gb|EFF02207.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280058|gb|EFI21562.1| type III secretion protein SctU [Escherichia coli FVEC1302]
 gi|300358241|gb|EFJ74111.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           198-1]
          Length = 379

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPDAIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI+R++S  +L    K  VK  +V  ++ +SL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      +LD+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E  + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|289663762|ref|ZP_06485343.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668184|ref|ZP_06489259.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 357

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++DA  +G+ PIS + +  + +L  ++ +    S  +  + + + + +
Sbjct: 2   SDEKTEKPTEKKLQDARRDGDIPISPDVTAAAVLLGAMLVMKLAGSYFVEHMRALMQIGM 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + +   L  + +    L++P L+  ++ G+    +Q     +L  V P 
Sbjct: 62  D--FTENTRDATAMNRALGRIGIEGLLLMLPFLVACLLGGLIGVFLQTGMNASLKPVTPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ + +N +K  VK IL+G ++ + +      ++         I  
Sbjct: 120 FDSLNPVNGVKKLFSLRSFINLLKLVVKAILIGVVLWLGIRALMPMIIGLAYEPTPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E K+S G+P +K ++
Sbjct: 180 IAWRTLGTLCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  I     E  S+A +++ NPTHYA+AL Y       P +VAKG +  A ++R  
Sbjct: 240 KEFAKELIFGDPRERVSKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+  V +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-VVELGDAVPESLFETVAVVLRWV 341


>gi|56475796|ref|YP_157385.1| flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1]
 gi|56311839|emb|CAI06484.1| Flagellar biosynthetic protein flhB [Aromatoleum aromaticum EbN1]
          Length = 388

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 163/323 (50%), Gaps = 2/323 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE  S +++E A  EG  P SRE S F  ++     L          +  
Sbjct: 1   MAE-DSDLEKTEQASPRRLEQAREEGQVPQSRELSTFLVLITGASGLWLMGGWIGERMLG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L        +    D   ++     L   A   ++P   + M+  +G+ ++    V + 
Sbjct: 60  MLRHGFR-FERALAFDPQLMLQDFGDLFTQALLTMLPLFGVLMVAAVGAPILLGGFVFSP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +     R+   +GI R++ ++ LV  +KS +K  +VG I   ++      +    S  
Sbjct: 119 KALGLELDRMDPLKGIGRMFLLHGLVEMLKSLLKAAVVGGIGVFAMWRERDHIFALTSEA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      V    ++I++ +A L ++D+ +   Q++ +L+M+K+E+K E K+  G+P
Sbjct: 179 VERAVPDFLQAVLFSALLIIMGLALLALIDVPFQLWQYHKRLRMTKEEVKREGKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S+ R   R +MM    +A +++TNPTH+++AL+Y   +  APV+VAKG+  IA
Sbjct: 239 HVKGRIRSMQREMARRRMMAEVPKADVVVTNPTHFSVALKYDAQKMGAPVVVAKGRGEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARS 323
            K+R++A EH +P+ E P LAR+
Sbjct: 299 LKIRELAKEHKVPLLEAPPLARA 321


>gi|220903612|ref|YP_002478924.1| flagellar biosynthesis protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867911|gb|ACL48246.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 359

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 100/354 (28%), Positives = 182/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M       +KTE  + K+I     EGN P S+E     S+L  +  L  +  P   ++  
Sbjct: 1   MFGKQKDPSKTEEATPKRIRKQRGEGNVPKSQELGKAVSLLGGMSILYAWIGPMSEAIKK 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L+ A +    +  ++  L   L +   ++++P LL   +  + +  +Q   +   
Sbjct: 61  LFRHFLSHAWEFD-PNPENVYSLTLELMIEVCKIIMPILLTLAVLSMLAQRLQVGKLWTT 119

Query: 121 NHVKPSFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              KP  +R ++ +GIK++ +S   ++  +KS +  +++ TI    + + Y   L    A
Sbjct: 120 KVFKPKLQRFNIFKGIKQMLFSPQTILRTIKSLLFSLILSTIPAWIIYKEYQNFLPMYYA 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               +  +      K++   L+ I  +   D+  S + +   +KM+K E+KDE KQ+ G+
Sbjct: 180 TTEGVAVYMLQMAFKLVSYALIPILIIAAFDVWQSRYSYKENMKMTKDEVKDEHKQADGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K++Q+      +  +M++   +A ++ITNPTH A+ALRY  TE  APV++AKG + +
Sbjct: 240 PVVKSQQRKKMMEAMSKRMLQDVPKADVVITNPTHIAVALRYNATEAPAPVVLAKGADHL 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K+++ A EHN+PI E   LAR+L+K   +   IP   YKAVA ++  I+  K
Sbjct: 300 AEKIKQAAREHNVPIRENVPLARALYKSAEVGDMIPEELYKAVATVLAAIWKLK 353


>gi|254711986|ref|ZP_05173797.1| flagellar biosynthesis protein FlhB [Brucella ceti M644/93/1]
 gi|254715056|ref|ZP_05176867.1| flagellar biosynthesis protein FlhB [Brucella ceti M13/05/1]
 gi|261216763|ref|ZP_05931044.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1]
 gi|261319630|ref|ZP_05958827.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1]
 gi|260921852|gb|EEX88420.1| flagellar biosynthetic protein FlhB [Brucella ceti M13/05/1]
 gi|261292320|gb|EEX95816.1| flagellar biosynthetic protein FlhB [Brucella ceti M644/93/1]
          Length = 356

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 207/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQVGFLKSLAKLLAASVIVFLVFFKGNSLFTDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PGALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|260768792|ref|ZP_05877726.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|260616822|gb|EEX42007.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
          Length = 372

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           +  +KTE  SS+K++ A  +G    S+E S    ++ C+ Y  +  +  +      L  +
Sbjct: 2   SSGDKTEQASSQKLDKARKQGQIARSKEFSSAIMLMVCIGYF-YANADSLSGHLMQLFEV 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
               T     D  HI+ L+T       ++  P ++   +    +  +      NL+ + P
Sbjct: 61  SFRFTAESQSDHDHILHLITQSLYLMIKVFAPLIIFQFIASAIATCLLGGFHFNLSLLAP 120

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F +++   GIKRI+S   LV F+K+  KI L+  ++   ++ N+  +   + A+  + +
Sbjct: 121 KFSKINPLSGIKRIFSKQTLVEFLKNVAKISLIFALLYYMISTNFHMIGSLVRASFQTTI 180

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           + +   V ++L M++L      V+DI +    + +++KM+KQE+K E K+  G P IK+R
Sbjct: 181 HFSLQYVLELLGMLILIAILFGVIDIPYQKMTFGTQMKMTKQEVKQEHKEQEGRPEIKSR 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + I     R    +    A +++ NPTH+A+AL+Y  T+ +AP +VAKG+N +A  +R 
Sbjct: 241 IRQIQMQNARRSASQTVPTADVVLMNPTHFAVALKYDLTKAEAPFVVAKGKNEVAFYIRT 300

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A +H + +   P + RS++    +N  IP   + AVAQ++  +   K
Sbjct: 301 LAEQHQVEVLVVPEITRSIYHTTQLNQMIPNQLFLAVAQILKYVQQLK 348


>gi|196247620|ref|ZP_03146322.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16]
 gi|196212404|gb|EDY07161.1| flagellar biosynthetic protein FlhB [Geobacillus sp. G11MC16]
          Length = 360

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 174/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S +A   + +LA  + L    +     +       L+
Sbjct: 13  GEKTEKATPRKRQEVREKGQVAKSGDAVAAAVLLATFLALFLAGAYERDGLLRLFTRALS 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L  I  +  L       A+ L+ P     ++    +  +Q   +  +  +K  +
Sbjct: 73  DYASVPL-TIDSLHLLFLDWLRHAAFLLAPFFAAAVLAAGLANFLQIGALFTVEPLKMDW 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++  +G+KR +S+  +V  +KS +K  ++GT++   L      +L  +S  P ++L  
Sbjct: 132 NRLNPVKGMKRFFSLRAIVELLKSVLKTGIIGTVVFTLLFFERNELLALVSKPPGAMLAV 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 IGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A ++++IA
Sbjct: 252 QKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALRIKEIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             + +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|160902843|ref|YP_001568424.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95]
 gi|160360487|gb|ABX32101.1| flagellar biosynthetic protein FlhB [Petrotoga mobilis SJ95]
          Length = 363

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 186/347 (53%), Gaps = 3/347 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE P+ +++E A  EGN P S E ++  S L+  ++L   F P +  +    +  
Sbjct: 18  ADPDKTEDPTPRRLEKAREEGNIPQSNEFNMAVSFLSISLFLWIIFEPLLNDIFKVFYDY 77

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+          + ++       ++    +I   ++ ++      +IQ   +     +K 
Sbjct: 78  LSLDLDYS---PTDLLGYEITAHMNLYIKLILFFVVAVVVSTLLGMIQTKFLFTFKSLKL 134

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++  +G KR++S+ ++V  +K+ +K+ ++G +    +  N+F +L           
Sbjct: 135 DLSKINPIKGFKRLFSLRSVVELIKALLKLTILGLLTYNIIKSNWFKILSLAGEETGFSF 194

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F  V  +L  + + +  L++ D  +  +++  +LKMSK E+K E K+  GNP IK R
Sbjct: 195 NVIFDLVINILFQLGIVLLLLSLFDFWYQRYEYKKELKMSKYEVKQERKEIEGNPEIKQR 254

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ + R+  R +MM+    A ++ITNPTHYA+A+ Y   E  AP++VAKG++ +A K+R+
Sbjct: 255 QRELMRNLARSRMMQKVPEADVVITNPTHYAVAIEYKAEEMQAPIVVAKGKDEVAFKIRE 314

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           IA++H IPI E P+LAR ++++V +N  IP   Y  VA+++  +Y  
Sbjct: 315 IAFKHGIPILERPALAREIYEKVELNEEIPEDLYTLVAEVLAYVYKL 361


>gi|108758626|ref|YP_630670.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
 gi|108462506|gb|ABF87691.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
          Length = 359

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 170/351 (48%), Gaps = 4/351 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    KTE PS KK++D+  +G    S++ S    +L  L  +   +      +TS   
Sbjct: 2   SDESGEKTEEPSQKKLDDSRKKGQVWKSKDLSGVGVLLVGLAAVKGSWDMLETELTSLFL 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYLIQRIPVLNLNH 122
                 T     D+S     L  L L A  LV +P L    + G     +Q   +  ++ 
Sbjct: 62  FSFDHLTNPV--DLSVATGQLLFLGLRAVVLVSLPVLAGGAIVGGLMEYLQVGTLFTMDP 119

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           + P  ++++  +G+K +++   +V  +K+ +KI +   ++   + ++   + + +  +  
Sbjct: 120 LIPKMEKLNPIQGMKNLFNKKAIVELLKNLIKISVTAYVVYGVVRDSMPMVAETLRQDTR 179

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I+      V +V   + L      V D+ W    +   + M+K+E+K E KQS G+P  
Sbjct: 180 GIMAIMGELVTRVATRVALLFVLFGVFDVWWQRKSFMKDMMMTKEEVKKEYKQSEGDPHH 239

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K ++K + +  +    MEA   A +I+TNP H A+AL+Y + ++ AP ++A+G +  A++
Sbjct: 240 KAKRKEMHQEIMEGAQMEAVREADVIVTNPDHVAVALKYDREKDGAPRVLARGIDFKAER 299

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ IA E ++P      LA +L + V +   +P   Y AVA+++  +Y  K
Sbjct: 300 IKAIAREQDVPTLRNVPLAHALLR-VEVGHEVPEELYDAVAEVLNFVYGLK 349


>gi|256020206|ref|ZP_05434071.1| flagellar biosynthesis protein FlhB [Shigella sp. D9]
 gi|260866391|ref|YP_003232793.1| putative lateral flagellar export pore protein [Escherichia coli
           O111:H- str. 11128]
 gi|300817293|ref|ZP_07097511.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           107-1]
 gi|307315219|ref|ZP_07594798.1| type III secretion exporter [Escherichia coli W]
 gi|331666524|ref|ZP_08367398.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|332281368|ref|ZP_08393781.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|257762747|dbj|BAI34242.1| predicted lateral flagellar export pore protein [Escherichia coli
           O111:H- str. 11128]
 gi|300530269|gb|EFK51331.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           107-1]
 gi|306905400|gb|EFN35937.1| type III secretion exporter [Escherichia coli W]
 gi|315059466|gb|ADT73793.1| Lateral flagellar export/assembly protein [Escherichia coli W]
 gi|323178517|gb|EFZ64095.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1180]
 gi|323379976|gb|ADX52244.1| type III secretion exporter [Escherichia coli KO11]
 gi|331065748|gb|EGI37632.1| flagellar biosynthetic protein FlhB [Escherichia coli TA271]
 gi|332103720|gb|EGJ07066.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 379

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  N+ + L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  +   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|220929449|ref|YP_002506358.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum
           H10]
 gi|219999777|gb|ACL76378.1| flagellar biosynthetic protein FlhB [Clostridium cellulolyticum
           H10]
          Length = 381

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 179/349 (51%), Gaps = 1/349 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE  + KK  DA  +G    SRE +    ++  ++ +  F       +T  +   
Sbjct: 27  GAGDKTEKATPKKKSDARKKGQVFQSREMTASLILIITIVAMRIFGGTIYSQLTQYIKKT 86

Query: 66  LAS-ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                T +   D + +  L     +  ++ V+P LL+ ++  +     Q   +  +  +K
Sbjct: 87  FNEYLTVKDAIDFNILANLFIDALMVLAKTVLPLLLMALLAALIVNYAQVGILFTMETLK 146

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
               R++   G KRI+S+ ++V  +KS +KII+V  +    L      +L  +  +  ++
Sbjct: 147 IKGDRINPLSGFKRIFSLRSVVELLKSIIKIIIVSWVAYSYLKSKTEQVLSLMDTDLMNV 206

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L         V + I + +  L   D  +  + +   LKM+KQE+K+E KQ  G+P IK+
Sbjct: 207 LIFICDASFTVALRICMAMVILGFADYLYQRYDYEKNLKMTKQEVKEEYKQMEGSPEIKS 266

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + K   R     +MM+   +A ++ITNPTH+A+AL+Y   ++ AP +VAKGQ+ IA +++
Sbjct: 267 KIKQKQRQMSMKRMMQDIPKADVVITNPTHFAVALKYDTEKSSAPFVVAKGQDYIALRIK 326

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA ++ + I E   LAR+L+  V I  AIPP  Y+AVA+++  +Y+ K
Sbjct: 327 QIASDNKVQIVENKPLARTLYSTVDIGQAIPPDLYQAVAEILAFVYNLK 375


>gi|310820310|ref|YP_003952668.1| type III secretion protein hrpy/hrcu family protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393382|gb|ADO70841.1| Type III secretion protein HrpY/HrcU family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 353

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 162/347 (46%), Gaps = 2/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE PS KK++DA  +G    S++ +     L  L  +   +   +  +   L +  
Sbjct: 2   SDEKTEEPSQKKLDDARKKGQVWKSKDLTGVFVFLVGLGAVKGMWDTIVEEL-KTLFLFT 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                +  E        ++    +   L  P +    +       +Q   +  ++ + P 
Sbjct: 61  FQYISQPEELSRATSNAMSMAVHTVLFLTAPIVAGGAVIAGLVEFLQVGALFTMDPLIPK 120

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            ++++  +GIK I+S   +V  +K+ VKI +   ++   + +    ++  +  +   +L 
Sbjct: 121 LEKLNPIQGIKNIFSKKTVVEMIKNLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLA 180

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V +V   + L     ++ DI W    +  ++ MSK ++K E K+S G+P  K  +
Sbjct: 181 VMGEMVYRVCTRVALVFLLFSIFDIWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHR 240

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K + +  +    MEA   A +I+TNP H A+AL+Y + ++ AP ++AKG +  A++++ I
Sbjct: 241 KQMHQEIMEGAQMEAVKDADVIVTNPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAI 300

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E ++P      LA +L + V +   IP   Y AVA+++  +Y  K
Sbjct: 301 ARESDVPTLRNVPLAHALLR-VDVGQDIPEELYDAVAEVLNFVYGLK 346


>gi|260853445|ref|YP_003227336.1| putative lateral flagellar export pore protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257752094|dbj|BAI23596.1| predicted lateral flagellar export pore protein [Escherichia coli
           O26:H11 str. 11368]
 gi|323158016|gb|EFZ44117.1| flhB HrpN YscU SpaS family protein [Escherichia coli EPECa14]
          Length = 379

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI+R++S  +L    K  VK ++V  ++ +SL  N+ + L   +  
Sbjct: 117 KKILPDFSKISPLKGIERLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFASFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  +   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|197104398|ref|YP_002129775.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum
           HLK1]
 gi|196477818|gb|ACG77346.1| flagellar biosynthesis protein FlhB [Phenylobacterium zucineum
           HLK1]
          Length = 359

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 107/352 (30%), Positives = 198/352 (56%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE +   +KTE  + +K+E A ++G+   + + S F+++ A    L          + S
Sbjct: 1   MSETEQS-SKTEEATPRKLEKARSQGDVAKTMDLSSFATLAAGAAALAVTGGWLARKMAS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L   +       L      V +  H+ ++A+  +   L    + G+ ++L+Q   + + 
Sbjct: 60  ELLPFVERPHAIDLHGAGG-VDIARHVIMAAAPALAIVLGATAICGVAAHLMQTGLIFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  K++S   G+K+I+ ++NLVNF+KS VK+I+ G +    L      + +  + +
Sbjct: 119 EKMKPDLKKLSPIAGLKKIFGLDNLVNFLKSLVKVIVTGALGWWLLQPYIPQLAELAALD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +++  A   +++++  +     ++   D  W   ++  ++KM+++E+KD+ KQ  G+P
Sbjct: 179 PLAMMPFAVDILKRLVFAVAALTLSIAGADWIWQKRRYLHRMKMTREEVKDDFKQVEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K RQK I  +R R +MM A   AT+++ NPTHYA+AL+Y  +E  AP+ VAKG + +A
Sbjct: 239 HVKARQKQIRFTRARQRMMAAVPDATVVVMNPTHYAVALKYDASETPAPMCVAKGLDSLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R +A E  +P+ E+P LAR+L+  V I+  IPP  Y+AVA++I  I ++
Sbjct: 299 LKIRAVAEEAGVPVIEDPPLARALYAAVEIDDMIPPAHYEAVAKIIGFILNR 350


>gi|115523575|ref|YP_780486.1| flagellar biosynthesis protein FlhB [Rhodopseudomonas palustris
           BisA53]
 gi|115517522|gb|ABJ05506.1| flagellar biosynthetic protein FlhB [Rhodopseudomonas palustris
           BisA53]
          Length = 356

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 187/353 (52%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+   KTE P+ K+++DA   G+   S+E + +  I    + L  F       + +
Sbjct: 1   MSDDDSS-EKTEDPTQKRLDDAHQRGDVAKSQEVNTWFVIAGGTLVLSSFSGSIGAGLQN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL ++   + +    +    T + +  + L +P LL+ M+  +   ++Q   V + 
Sbjct: 60  PLRNLLENSWMIRTDGPGLLALAQTLIYVVIAALGVP-LLMLMIAAVAGNVLQHRLVFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F ++S  +G KR++       F+K   KII +G ++   L      +   +  +
Sbjct: 119 EGLKPKFSKLSPMQGAKRLFGKQAWATFLKGLFKIIALGAVMVAVLWPERHRLEAMVRFD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +++        ++L  ++  +A + V D  + Y  WY K KMS QEIK+E KQS G+P
Sbjct: 179 VAALMGTTITLTLQLLGAVVAMLAAVAVADFFFQYRTWYEKQKMSLQEIKEEHKQSEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +   R+R +MM A  +A+++ITNPTHY++AL Y      APV VAKG + +A
Sbjct: 239 HIKGKLRQLRMQRMRQRMMAAVPKASVVITNPTHYSVALSYESG-MQAPVCVAKGADAVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A  +++PI E   LAR+L+  V I+  +P   Y AVA++I  +   K
Sbjct: 298 LKIREVAKANDVPIVENVPLARALYATVKIDEEVPVEHYHAVAEVIGYVMRLK 350


>gi|323181524|gb|EFZ66944.1| flhB HrpN YscU SpaS family protein [Escherichia coli 1357]
          Length = 379

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI+R++S  +L    K  VK ++V  ++ +SL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  +   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|254469948|ref|ZP_05083353.1| translocation protein in type III secretion [Pseudovibrio sp.
           JE062]
 gi|211961783|gb|EEA96978.1| translocation protein in type III secretion [Pseudovibrio sp.
           JE062]
          Length = 377

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS   +   KTE P+ K+  ++  +G    S E +   S+ + + YL F +      +  
Sbjct: 1   MS-GQSSGEKTELPTPKRERESREKGQVAKSTEVTTTISLFSVIAYLWFSWDLNFSKLVG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L   AT+R     S     +  +  +   +V+P + + +  GI    +Q   +  +
Sbjct: 60  LMDDLADLATRRDFS--SSAGEGVFGVFSTFMDIVLPLIGVAIAAGIFGNFVQFGFLWAV 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   ++S  EG KRI+S+  +V  +KS +KI+L+ T++  ++       ++ +S  
Sbjct: 118 DSIMPKLSKISPAEGFKRIFSLKQVVQVLKSILKIVLLSTMLYFTVKYAIGAYINSLSCG 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I   +   ++ +L +  L    + +LD  +  H     LKM+K+E+K E K+S G+P
Sbjct: 178 IPCITNISGAIMKLILGISFLAFVGVAILDFMFQKHTHIKSLKMTKEEVKREHKESEGSP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK ++K I++  +    +E T +A+ ++ NPTHYA+A+ Y   E   P++VAKG +L A
Sbjct: 238 EIKGQRKRISQEILMSDNLENTRKASAVVVNPTHYAVAISYRPDEVAVPLVVAKGLDLTA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            KMR  A    +PIF    LAR L  +V I   IP   + AVA+++  I   K
Sbjct: 298 LKMRAEAEAAGVPIFANVKLARMLHAEVQIEELIPQDMFAAVAEILVWIDQNK 350


>gi|301646788|ref|ZP_07246642.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           146-1]
 gi|307136835|ref|ZP_07496191.1| flagellar biosynthesis protein FlhB [Escherichia coli H736]
 gi|331640691|ref|ZP_08341838.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
 gi|301075023|gb|EFK89829.1| putative flagellar biosynthetic protein FlhB [Escherichia coli MS
           146-1]
 gi|315616850|gb|EFU97467.1| flhB HrpN YscU SpaS family protein [Escherichia coli 3431]
 gi|331040065|gb|EGI12273.1| flagellar biosynthetic protein FlhB [Escherichia coli H736]
          Length = 379

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPEVIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI R++S  +L    K  VK ++V  ++ +SL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSVVVLVMLWVSLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      ++D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNEGLSLYACVMRNFVILFIFFALIDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y  +   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDSSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E+ + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|138894758|ref|YP_001125211.1| flagellar biosynthesis protein FlhB [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266271|gb|ABO66466.1| Flagellar biosynthetic protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 360

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 174/346 (50%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S +A   + +LA  + L    +     +       L+
Sbjct: 13  GEKTEKATPRKRQEVREKGQVAKSGDAVAAAVLLATFLALFLAGAYERDGLLRLFTRALS 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L  I  +  L       A+ L+ P     ++    +  +Q   +  +  +K  +
Sbjct: 73  DYASVPL-TIDSLHLLFLDWLRHAAFLLAPFFAAAVLAAGLANFLQIGALFTVEPLKMDW 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++  +G+KR +S+  +V  +KS +K  ++GT++   L      +L  +S  P ++L  
Sbjct: 132 NRLNPVKGMKRFFSLRAIVELLKSMLKTGIIGTVVFTLLFFERNELLALVSKPPGAMLAV 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 IGGLTVKMGLYAAASLLFLALFDYLYQRFEFEKNIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A ++++IA
Sbjct: 252 QKQREMAMKRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYVALRIKEIA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             + +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KANGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|297530588|ref|YP_003671863.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3]
 gi|297253840|gb|ADI27286.1| flagellar biosynthetic protein FlhB [Geobacillus sp. C56-T3]
          Length = 360

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S +    S +LA  + L    +     +       L+
Sbjct: 13  GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L  +  +  L       AS L+ P     ++    +  +Q   +  +  +K  +
Sbjct: 73  DYASASL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDW 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++  +G+KR++S+  LV  +KS +K  ++G ++  +L      +   +S  P   L  
Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             H +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|21241179|ref|NP_640761.1| type III secretion system protein HrcU [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106486|gb|AAM35297.1| HrcU protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 357

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +          + + + +  
Sbjct: 2   SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P 
Sbjct: 62  DFP--ENTRDATAINRALGHIGIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I  
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A   +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341


>gi|254720636|ref|ZP_05182447.1| flagellar biosynthesis protein FlhB [Brucella sp. 83/13]
 gi|265985680|ref|ZP_06098415.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13]
 gi|306837360|ref|ZP_07470239.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653]
 gi|264664272|gb|EEZ34533.1| flagellar biosynthetic protein FlhB [Brucella sp. 83/13]
 gi|306407552|gb|EFM63752.1| flagellar biosynthetic protein FlhB [Brucella sp. NF 2653]
          Length = 356

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 205/353 (58%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFAAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  +  I +   Q  P    
Sbjct: 61  FLRELIDHPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLASIAASAFQNAPRFVS 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+S  +G +RI+     V F+KS  K++    I+ +   +      D ++ +
Sbjct: 121 ERIHPQASRISPLKGWQRIFGRAGQVEFLKSLAKLLAASVIVFLVFFKGNSLFSDAVATD 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++       V ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P
Sbjct: 181 PSALPEFLRKNVVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+R +S+ R R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA
Sbjct: 241 LVKSRLRSLGRDRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H+IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 301 LKIREIAASHSIPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 353


>gi|325295424|ref|YP_004281938.1| flagellar biosynthetic protein FlhB [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065872|gb|ADY73879.1| flagellar biosynthetic protein FlhB [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 347

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 9/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ +   KTE  + ++ + A  EG    S++  +  ++L     L F+       +  
Sbjct: 1   MAKDPS---KTEKATPRRRQKAKEEGQVLKSQDIPIAFTLLITSTLLYFYIPFAYKKLLQ 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  ++    L +   +       + + + L++P  L+  + GI S +IQ   + +L
Sbjct: 58  LFTFDFRTSNNVNLWNNYLVS------AKTFALLILPVFLVLFLGGIFSNIIQFGFLFSL 111

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P    ++  +G+ R++S+  L    ++ +K+I+   +   S              +
Sbjct: 112 KPLLPKLDNINPIKGLGRLFSLKTLFETFRNTLKLIIALAVGYFSGKYILSDFFSLSFIS 171

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            ++ +         +  +  L    +   D  +   ++   LKMSK+EIK+E KQ  G+P
Sbjct: 172 LNNQIILMLKYTLLLFFIFGLLSLPIAAADFLFRRWEYEENLKMSKEEIKEERKQYEGHP 231

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+  +   R     +MM    +A ++ITNPTHYA+ALRY + +  AP ++AKG + IA
Sbjct: 232 LIKSAIRRKQREIAMKRMMAEIPKADVVITNPTHYAVALRYERGKMHAPKVIAKGVDNIA 291

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K++KIA EHNIPI E P LAR L++   I S IP  FY+A+A+++ K+Y KK
Sbjct: 292 LKIKKIALEHNIPIEENPYLARVLYESCDIGSFIPEEFYQAIAKILAKVYKKK 344


>gi|207725003|ref|YP_002255400.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2]
 gi|206590230|emb|CAQ37191.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum MolK2]
          Length = 387

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 175/355 (49%), Gaps = 7/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S++++E A  EG+ P SRE   F  +      L         S+  
Sbjct: 1   MSE-ESDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLTVSAGGLWVMG----ESIVR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118
                LA   +    D +       ++      L  V+ GL+L ++    + L      +
Sbjct: 56  AASAFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAI 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P   R+    G+KR++S+  L+   +   K++LVG +    +       ++   
Sbjct: 116 SFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPR 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  + ++          + +   +  +  +D+  +  Q+  K +M+K+E++ E ++S G
Sbjct: 176 QDLVAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG ++
Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350


>gi|78045982|ref|YP_362157.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927677|ref|ZP_08188905.1| HrcU protein [Xanthomonas perforans 91-118]
 gi|78034412|emb|CAJ22057.1| HrcU protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541878|gb|EGD13392.1| HrcU protein [Xanthomonas perforans 91-118]
          Length = 357

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +          + + + +  
Sbjct: 2   SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFSDHMRALMTIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             +   +  D + I   L H+ +    L++P L   ++ G+     Q     +L  V P 
Sbjct: 62  DFSEHTR--DAAAINRALGHIGIQGLLLMLPFLAACLVAGMAGGAFQTGLNASLKPVAPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  +  
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRALMPMIIGLAYETPLDVAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D       +    +MSK E K E+K+S G+P IK+++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQRWLFIRDKRMSKDEQKREVKESEGDPEIKDKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  AIP   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAIPEPLFETVAVVLRWV 341


>gi|42524691|ref|NP_970071.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100]
 gi|39576901|emb|CAE78130.1| flagella-associated protein [Bdellovibrio bacteriovorus HD100]
          Length = 353

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    K+E  +  + E+    GN   ++E +    +LA    + +      +    
Sbjct: 1   MAEDNG--EKSEEATDARREEFRKRGNVAHTKELASAVMLLAAAGGV-YALGRFFFKEMY 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++          K+    +      +  + A  L+ P LL   + G  S ++Q   +   
Sbjct: 58  EVFQHSFGDDMVKMVREGNFTEAAQYCGMKAMILIAPVLLFAGIIGAASSIVQIGFLQVE 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + V P+F++V+  EG KR++S+  +V  +KS +K+  V  ++   L      +   ++ +
Sbjct: 118 DAVSPNFEKVNPVEGFKRVFSMRAVVEALKSILKMGAVAMVLYFLLRSEVTQVPYMLTYS 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I+ +    V K+L  +   +  +   D  +       K+ M+KQE+K+E KQ  G+P
Sbjct: 178 IDQIIAYIGVIVVKLLGGVGAVMLVIAGADYFYQRFDLEKKMMMTKQEVKEEHKQREGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+R + I R     +MM    +A ++ITNPTH A+ L+Y      AP +VA G + +A
Sbjct: 238 MIKSRIRRIQREMASKRMMSEIPKADVVITNPTHIAVVLKYT-DNLPAPQIVAMGADHVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++IA E+N+PI E   LAR++FK + I   IP   + AVA+++  +Y  +
Sbjct: 297 EKIKEIARENNVPIVENKPLARTIFKTLKIGQVIPRELFVAVAEVLSYVYRLR 349


>gi|331671779|ref|ZP_08372575.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
 gi|331070768|gb|EGI42127.1| flagellar biosynthetic protein FlhB [Escherichia coli TA280]
          Length = 379

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPDAIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI+R++S  +L    K  VK  +V  ++ +SL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLMMLWVSLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      +LD+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E  + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|315126008|ref|YP_004068011.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913]
 gi|315014522|gb|ADT67860.1| flagellar biosynthetic protein [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSEN +   KTE P+ K+++ A  +G    S+E +    ++  +  LL +F+   YS+  
Sbjct: 1   MSEN-SSQEKTEQPTEKRLKKAKEDGQVARSKELNTAILLMVSIAGLL-WFANLFYSLFV 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L           + +   +   L+   ++    + P LLL       +  +    V + 
Sbjct: 59  NLMNSTMVLDHTIINNKKMMPIALSDAIMNMLSTLTPFLLLSFCAMWITGCLPGGFVFSK 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V     +++   G+ +++   +LV  +KS +KI L+   +   LT+ +  ++   + +
Sbjct: 119 KLVALKMSKLNPLTGLGKMFGKQSLVELLKSILKITLLAICLYTFLTKLWMQLMMLQNLD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   L++ +  +  + V+D+ +   Q   K+KM+ QE+K+E K S G+P
Sbjct: 179 IKVAIGQGIELLFLSLMITVTLLLFIAVIDVPFQQKQIADKIKMTHQEVKEERKSSDGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IKN+ + I   +   K+ E    A +I+TNPTHYA+A++Y +    AP +VAKG + +A
Sbjct: 239 EIKNKIRQIQYQQSNRKIEERVPTADVIVTNPTHYAVAIKYSEEAAKAPYVVAKGVDEMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A  +N  I E P+LAR+++    ++  +P   Y AVA ++  +   K
Sbjct: 299 LRIREVARMNNKEIIEIPALARAIYFSTRVDQEVPNGLYSAVAYVLTYVLQLK 351


>gi|89068708|ref|ZP_01156094.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
 gi|89045671|gb|EAR51733.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
          Length = 373

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 107/357 (29%), Positives = 195/357 (54%), Gaps = 5/357 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++   +KTE PS +K++ A ++G+ P SRE      + + ++   F        + +
Sbjct: 1   MAEDEDKHSKTEQPSERKLKKARDKGDVPASRETGTAMVVFSLMLLSAFLIPSVGSGLVA 60

Query: 61  DLHVLLASATQRKLED----ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            L  L+  A Q +++     ++ +  L + L+    R++ P  LL ++  +   LIQ   
Sbjct: 61  ALGALIDVAGQVEIDSGRAGLADVSALSSELTGQVGRVLAPLFLLMIVGALFGVLIQGET 120

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V++L  ++P + ++S   G+KR++S + +V F+K+ +K+++V  I T          +  
Sbjct: 121 VVSLERIRPKYSKISPLGGVKRLFSADMIVEFLKNTLKVVIVAAIGTWIARRAVSQ-VWM 179

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            S  P ++       V  +L+     +    + DI W   QW  K +MS +E++DE K++
Sbjct: 180 GSLAPEALPGFVRGEVTAMLMATAALLVPFAIADILWKRAQWTKKQRMSLKEVRDEHKET 239

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK ++  I R R R ++  A  +AT+IITNPTH+A+ALRY    + APV VAKG 
Sbjct: 240 EGDPFIKQKRTDIRRERARQRIATAVPKATVIITNPTHFAVALRYQPGVDQAPVCVAKGA 299

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A ++R++  E++IPI E   LARSL     I++ +P   ++A+A++I  +   K
Sbjct: 300 DHVAARIRELGRENDIPILENKPLARSLHAVAEIDAVVPVEHWQALAEIISWVMDLK 356


>gi|144900464|emb|CAM77328.1| Type III secretion exporter [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 357

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 196/353 (55%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +A D+KTE P+ K++ DA  EGN P + EA    S++   I L F      +++ +
Sbjct: 1   MAD-EASDDKTEEPTGKRLGDARTEGNIPQTMEAKAMMSLVLAAIMLGFLAPDMAHNIKA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +      ++        LL         ++IP  L+  +  + S    +  +   
Sbjct: 60  VITPYIEQVHLMEVGPDGLGELLLHLSLGVLQSMIIPFALVIFLGVVASLAQTKGFLWVP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P FK+++  EG KRI+S+N L+   K  +K+ ++G ++   L  +   + +  +  
Sbjct: 120 KKIAPDFKKLNPLEGYKRIFSVNQLMELGKQLIKLTVLGLLLGWVLWGSIGEIENLANLE 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +IL +    +  ++++ L+ +  L V D  +   +W  K+KM+KQE+KDE KQ+ G+P
Sbjct: 180 LMAILEYISDKIFWMVLVTLMMVTLLAVGDYLFQRWRWMEKMKMTKQEVKDEHKQAEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + KS+   R R +MM A  +A ++ITNPTHYA+AL+Y      AP+LVAKG +L+A
Sbjct: 240 QVKAKIKSLRFQRARKRMMAAVPKADVVITNPTHYAVALKYDLDAMSAPILVAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           K++R +A EH++PI E P +AR+LF  V ++  IPP  YKAVA++I  +   K
Sbjct: 300 KRIRDLADEHDVPIVENPPVARALFAAVELDQEIPPEHYKAVAEIIGYVMRLK 352


>gi|162417792|ref|YP_001604479.1| type III secretion appartus protein YscU [Yersinia pestis Angola]
 gi|162354812|gb|ABX88759.1| type III secretion appartus protein YscU [Yersinia pestis Angola]
          Length = 354

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 182/348 (52%), Gaps = 3/348 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KKI DA  +G    S+E    + ++  L  +L + S   +   S L  +L
Sbjct: 2   SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTA-LIVALSAMLMWLSDYYFEHFSKL--ML 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP 
Sbjct: 59  IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I  
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKI
Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A E  +PI +   LAR+L+    ++  IP    +A A+++  +  + I
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346


>gi|56419772|ref|YP_147090.1| flagellar biosynthesis protein FlhB [Geobacillus kaustophilus
           HTA426]
 gi|56379614|dbj|BAD75522.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426]
          Length = 360

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S +    S +LA  + L    +     +       L+
Sbjct: 13  GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 L  +  +  L       AS L+ P     ++    +  +Q   +  +  +K  +
Sbjct: 73  DYASASL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDW 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++  +G+KR++S+  LV  +KS +K  ++G ++  +L      +   +S  P   L  
Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMAMKIKEVA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             H +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|206889713|ref|YP_002249863.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741651|gb|ACI20708.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 353

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M E      +TE  + ++ E A  +G  P SRE +         +Y +F     + S+  
Sbjct: 1   MPEE--LQERTEQATPRRREKARQKGEVPRSRELTGIIGTWMIFLYFVF-SGTFLISIMQ 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +          +    + I  +   +     + + P   + +   +  + IQ   +   
Sbjct: 58  HMKEAFTRVKNPEFVASAIITIIKDEIKWYFIQFL-PIGGVLLFGVLLVHFIQTGFLFTG 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++S  +GIK+++S+N L   +K  +K++ +G +I   L ++   +   I  +
Sbjct: 117 ATLVPDVSKISPLKGIKKLFSLNALFETIKGILKLVALGIVIYFVLKKDVNILPLLIDMD 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +I   +F  + ++++  L+ +     +D  +   Q+   L+M+KQEIK+E K++ G+P
Sbjct: 177 VKAIAGISFQKIYQLILACLIMLTVFAGIDFAYQRWQYERNLRMTKQEIKEEFKETEGSP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ R +S+ R   R +MM+   +A ++ITNP H A+ ++Y     +AP +VAKG NL+A
Sbjct: 237 MVRARIRSLQREMARKRMMQEVPKADVVITNPLHLAVCIKYDSKNMNAPAVVAKGANLLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++IA    +PI+E   LAR+L++ +P+   IP   YKAVA ++  +Y  K
Sbjct: 297 ERIKEIARASGVPIYENKPLARALYR-IPLGEEIPEALYKAVATILATVYKIK 348


>gi|312879606|ref|ZP_07739406.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM
           12260]
 gi|310782897|gb|EFQ23295.1| flagellar biosynthetic protein FlhB [Aminomonas paucivorans DSM
           12260]
          Length = 390

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 182/347 (52%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + K+E  + +K + +  EG    S++      +L  L+ LL F       V      L+
Sbjct: 37  SEEKSEPATPRKRQKSREEGQVVRSQDLVASVILLLGLLMLLMFGLFTGELVVGLFQDLI 96

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    ++++    +V  LT  S       +P  L   +  +G  + Q   VL    + P 
Sbjct: 97  AYLPSKEIQGDRWLVLPLTRSSRVFFLSWLPLGLCCTLGALGLMVYQVGFVLTPKPLIPK 156

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           + R++  EG+KR+ SI +LV  +K  +K +L+  I+  +L ++   ++  +       + 
Sbjct: 157 WNRLNPVEGMKRLISIRSLVELVKGILKALLLLLILYSALRKDLAALISTMRYPFTQGMG 216

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +   + + +  L + D  +   ++   ++MSKQEIK+E KQ  G+P++K R 
Sbjct: 217 AVVDKIWSLSFKMAMMLFVLGLFDYLYQRWEFERSIRMSKQEIKEEYKQMEGDPLVKRRI 276

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R   + +MM    +A ++ITNPTH ALAL+Y +   +AP+L+AKG+  IA+K+R++
Sbjct: 277 RQRQRELAQRRMMAEVPKADVVITNPTHLALALQYDREIMEAPLLLAKGEGYIARKIREV 336

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A EH IPI + P LA++L+++V +   +P  FY+AVA+++  +Y  K
Sbjct: 337 AEEHKIPIVQNPPLAQALYREVEVGGEVPEAFYRAVAEVLAFVYRLK 383


>gi|300697969|ref|YP_003748630.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957]
 gi|299074693|emb|CBJ54250.1| flagellar export pore protein [Ralstonia solanacearum CFBP2957]
          Length = 387

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 175/355 (49%), Gaps = 7/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S++++E A  EG+ P SRE   F  +      L         S+  
Sbjct: 1   MSE-ESDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLAVSAGGLWVMG----ESIVR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118
                LA   +    D +       ++      L  V+ GL+L ++    + L      +
Sbjct: 56  AASAFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLVLAALAPLALTRGAI 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +L  + P   R+    G+KR++S+  L+   +   K+ LVG +    +       ++   
Sbjct: 116 SLKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLALVGGVGWWLILHYRDDFVELPR 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  + ++          + +   +  +  +D+  +  Q+  K +M+K+E++ E ++S G
Sbjct: 176 QDLAAGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG ++
Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350


>gi|10955567|ref|NP_052408.1| YscU [Yersinia enterocolitica]
 gi|332163589|ref|YP_004424931.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|4324354|gb|AAD16831.1| YscU [Yersinia enterocolitica W22703]
 gi|318608194|emb|CBY78168.1| type III secretion inner membrane protein
           (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar
           export components) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667819|gb|ADZ44462.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 354

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 179/348 (51%), Gaps = 3/348 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KKI DA  +G    S+E    + I+A    L+         ++  +   L
Sbjct: 2   SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTTLIVALSAMLMGLSDYYFEHLSRLM---L 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP 
Sbjct: 59  IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I  
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKI
Sbjct: 239 RQFHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A E  +PI +   LAR+L+    ++  IP    +A A+++  +  + I
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346


>gi|218887500|ref|YP_002436821.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758454|gb|ACL09353.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 346

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 169/345 (48%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P+ K++ +A  +G+   S++     ++LA   YL          +   + V   S
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDVGSALTVLAVGAYLAIKGGDIFAEI---MAVTELS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q  L     +  L T ++  A  +V+P + L M  G+ + L Q   +  L    P  +
Sbjct: 60  MRQMSLPFDQALPLLATAVTRGAIGIVLPVVGLAMCVGLLANLAQTGVLFALKAAMPKLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +S  +  K+++S+ N V  +K+ +K+ ++G  +   L+++   +          +L   
Sbjct: 120 NMSPGKWFKKVFSVRNAVEMLKNCIKVAVLGWAVWKVLSDHMRGLFAIPDGGIGGLLTVL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
             T R +++        +  LD  +   Q+  +  M+K E+K E K+  G+P IK ++K 
Sbjct: 180 GITARDMVLTSAAVFCVIAALDYMYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  I    +    +A +I+TNPTHYA+AL Y +     PV++AKG+ L+AK+M +IA 
Sbjct: 240 LHQEMITQNTLSNVRKAKVIVTNPTHYAVALDYEKDRTPLPVILAKGEGLLAKRMVEIAR 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           E  IP+ +   LARSLF +   N+ IP      VA+++  +   +
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKDLIGPVAEVLRWVQSLQ 344


>gi|59889759|emb|CAH19114.1| Lateral flagellar export/assembly protein (FlhB-like) [Escherichia
           coli]
 gi|284920023|emb|CBG33079.1| lateral flagellar export/assembly protein (FlhB-like) [Escherichia
           coli 042]
          Length = 379

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSF-PWYADFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  + +    Q ++ +   I   L H  L   + ++  L +     + S L+    +   
Sbjct: 59  ESFISVHQYAQ-EINNPDAIGQFLRHHLLILGKFILTLLPMPA-AALLSSLVPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F ++S  +GI+R++S  +L    K  VK  +V  ++ +SL  N+   L   +  
Sbjct: 117 KKILPDFSKISPLKGIRRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNNFAAFLGLQALP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      +LD+  +   +   LKM+KQ++K+E K   G P
Sbjct: 177 FKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQKLKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E  + + E P LARS++    +N  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAESQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMK 349


>gi|28373013|ref|NP_783682.1| YscU [Yersinia enterocolitica]
 gi|32470295|ref|NP_863530.1| YscU [Yersinia enterocolitica]
 gi|122815819|ref|YP_001004085.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579353|gb|AAK69230.1|AF336309_25 YscU [Yersinia enterocolitica]
 gi|23630585|gb|AAN37541.1| YscU [Yersinia enterocolitica]
 gi|121663693|emb|CAL10055.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923238|emb|CBW54704.1| YscU, T3SS component, autocleavable regulator,PMID 19165725
           [Yersinia enterocolitica (type O:8)]
          Length = 354

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 179/348 (51%), Gaps = 3/348 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KKI DA  +G    S+E    + I+A    L+         ++  +   L
Sbjct: 2   SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHLSRLM---L 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP 
Sbjct: 59  IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I  
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKI
Sbjct: 239 RQFHQEIQSGNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A E  +PI +   LAR+L+    ++  IP    +A A+++  +  + I
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346


>gi|163789632|ref|ZP_02184070.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7]
 gi|159875164|gb|EDP69230.1| flagellar biosynthesis protein B [Carnobacterium sp. AT7]
          Length = 355

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE  S KK+ DA  +G  P S + +   + +  ++   F  +  + +   
Sbjct: 1   MAEKDG---KTEKASPKKLRDARKKGEIPKSPDLTSAVTFIVFILSATFLGNYILKNSLL 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +       + + +  +     L    L  P L +  +    S ++Q   + + 
Sbjct: 58  YLQNYLTAGFSVDGLE-NDLADIGMKAILFTLVLAGPFLAIAFVAAFISSIVQTGFLFSA 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    +++   G K ++S   L   +K+  K+ LV  +   +L  + + +++  S  
Sbjct: 117 EPIKFKLSKINPISGFKNMFSKKTLFTLVKNVAKLTLVFWMAYKTLETSIYLIINSSSIG 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I +     V ++   + + +  L ++D  +  +     L+MSKQEIKDE K+S G+P
Sbjct: 177 TEKIFFLMSDLVMELGTQLGVLLLILGLVDYIYQVYDHRKNLRMSKQEIKDEYKESEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK++++   R   +  + E    AT +ITNPTH A+A+RY + +++ P++VAKG +  A
Sbjct: 237 QIKSQRRQRYRQLTKGALRE-VETATAVITNPTHLAIAIRYEKGKDEVPIIVAKGADHQA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+ A   ++PI E   +AR+++K V I   +P   Y+A+A+++  +Y  +
Sbjct: 296 AKIRERAKAFDVPIIENKPVARAMYKSVEIGQPVPIDLYQAIAEILALVYQME 348


>gi|195953033|ref|YP_002121323.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1]
 gi|195932645|gb|ACG57345.1| flagellar biosynthetic protein FlhB [Hydrogenobaculum sp. Y04AAS1]
          Length = 353

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 185/348 (53%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A +NKTE  +  +     +EGN   S+E      +L     L FF    I+ + SDL + 
Sbjct: 2   ASENKTEKATPYRRGKLKSEGNVAKSQEVVSALLMLVSTGAL-FFIGYKIFILFSDLILD 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +          S     L          + P  +L ++  +  Y++Q   +     ++P
Sbjct: 61  GSLRIDDPSFTPSDATKFLGLSFKKLLSDITPLFILAVLIVVFGYILQFGFIFTFKPLEP 120

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F +++  +G+K ++S+N L   +K+ +K++L+       L  ++ T++     +P   L
Sbjct: 121 NFSKLNPVDGLKNLFSLNALFELVKNSLKVMLLLIASFFILYFSFHTLVFSSYMSPSKGL 180

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + K+LI I +    L  LD  +    +  ++KMSKQE+KDE KQ  GN  +K +
Sbjct: 181 SEIARLIFKLLISIGIIGLMLAGLDFAYKKFDYEKRIKMSKQEVKDEFKQFEGNIEVKAK 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +       R +MM+   +A+++ITNPTH+A+ALRYI  ++ AP++VAKGQ+ +AKK+ +
Sbjct: 241 IRRRMMELSRSRMMQEVPKASVVITNPTHFAVALRYIPKQDRAPIVVAKGQDYMAKKIIE 300

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA  +++P+  +P LAR+L+K V I   IPP FYKAVA++I  I  +K
Sbjct: 301 IAELNDVPVVRKPELARALYKAVDIEEEIPPEFYKAVAEIIAYIVKRK 348


>gi|83749403|ref|ZP_00946397.1| Probable transmembrane flagellar biosynthetic protein (flhB)
           [Ralstonia solanacearum UW551]
 gi|207738850|ref|YP_002257243.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum
           IPO1609]
 gi|83723930|gb|EAP71114.1| Probable transmembrane flagellar biosynthetic protein (flhB)
           [Ralstonia solanacearum UW551]
 gi|206592220|emb|CAQ59126.1| flagellar biosynthetic protein flhb [Ralstonia solanacearum
           IPO1609]
          Length = 387

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 174/355 (49%), Gaps = 7/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S++++E A  EG+ P SRE   F  +      L         S+  
Sbjct: 1   MSE-ESDLEKTEPASARRLEQAREEGDVPQSRELVSFVLLTVSAGGLWVMG----ESIVR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL--VIPGLLLFMMFGIGSYLIQRIPVL 118
                LA   +    D +       ++      L  V+ GL+L +     + L      +
Sbjct: 56  AASAFLARCLEFHRYDYTRAQDQWQYVGAQFGPLATVLAGLMLMLALAALAPLALTRGAI 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P   R+    G+KR++S+  L+   +   K++LVG +    +       ++   
Sbjct: 116 SFKPLTPDITRLIGMHGLKRMFSVQGLLELPRLLAKLVLVGGVGWWLILHYRDDFVELPR 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  + ++          + +   +  +  +D+  +  Q+  K +M+K+E++ E ++S G
Sbjct: 176 QDLVTGMHDTMHVAGVAFLCMAGVMLLVAAVDVPLALWQYARKHRMTKEEVRKEHRESEG 235

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K R +++ R   + +MM    +A +I+TNPTHYA+ALRY + E  AP ++AKG ++
Sbjct: 236 DPQLKGRIRAMQRQAAQRRMMADVPKADVIVTNPTHYAVALRYSEQEGGAPRVLAKGADM 295

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A K+R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  +
Sbjct: 296 VAAKIRELGAEHKIPMLEAPPLARALYRHTEIGHQIPTALYAAVAEVLAYVYQLR 350


>gi|261419437|ref|YP_003253119.1| flagellar biosynthesis protein FlhB [Geobacillus sp. Y412MC61]
 gi|319766252|ref|YP_004131753.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52]
 gi|261375894|gb|ACX78637.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC61]
 gi|317111118|gb|ADU93610.1| flagellar biosynthetic protein FlhB [Geobacillus sp. Y412MC52]
          Length = 360

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 1/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + +K ++   +G    S +    S +LA  + L    +     +       L+
Sbjct: 13  GEKTEKATPRKRQEVREKGQVAKSGDVVSASVLLASFLALSLAGAYERDGLLRLFARALS 72

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +    L  +  +  L       AS L+ P     ++    +  +Q   +  +  +K   
Sbjct: 73  DSASPSL-TVDSLHRLFLDWLSHASLLLAPLFAAAVLAAGLANFLQIGALFTVEPLKMDG 131

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R++  +G+KR++S+  LV  +KS +K  ++G ++  +L      +   +S  P   L  
Sbjct: 132 NRLNPVQGMKRLFSLRALVELLKSVLKAGIIGAVVFAALLAERSELAALVSKTPGEALTV 191

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K+ +     +  L + D  +   ++   ++MSKQ+IKDE K++ G+P+IK+R K
Sbjct: 192 VGGLTVKMGLYAAGALLFLALFDYLYQRFEFEKSIRMSKQDIKDEYKKTEGDPLIKSRIK 251

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R     +MM+    A ++ITNPTHYA+AL+Y   + +APV+VAKG + +A K++++A
Sbjct: 252 QKQREMAMRRMMQEVPNADVVITNPTHYAVALKYEDGKMEAPVVVAKGADYMALKIKEVA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             H +   E   LA++L++Q  +   IP  F+KAVA+++  +Y  K
Sbjct: 312 KTHGVVTVENRPLAQALYRQTEVGDMIPEAFFKAVAEILAYVYRLK 357


>gi|283784007|ref|YP_003363872.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
 gi|282947461|emb|CBG87008.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
          Length = 379

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 178/353 (50%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ + + KTE PS++K+  A  EG  P S++  L +S+ A  + +   F P       
Sbjct: 1   MADS-SSEEKTEKPSAQKLRKAREEGQIPRSKDMGLAASLFAAFMVISSSF-PWYEDFVR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +  V +    Q ++ + + +   L H  L  ++ ++  L +     + + LI    +   
Sbjct: 59  ESFVSVHQYAQ-EINNPAIVGQFLQHHLLIMAKFILTLLPMPAAA-LAASLIPGGWLFLP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +V+  +GI R++S  +LV   K  VK +++  ++ +SL  N+ + L   +  
Sbjct: 117 KKMLPDFSKVNPLKGIGRLFSAEHLVETGKMMVKAVVILVMLWLSLRNNFASFLGLQALW 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         V+   ++      V+D+  +   +   LKM+KQE+K+E K   G P
Sbjct: 177 FKQAVSDGLALYSSVMRNFVILFVFFAVIDVPLAKKMFTKGLKMTKQEVKEEYKNQEGKP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R     ++ +   +A ++ITNPTHYA+AL+Y Q+   AP +VAKG + IA
Sbjct: 237 EVKARVRRLQRQLAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E  + + E P LARS++    IN  IP   Y+A+A ++  +   K
Sbjct: 297 LYIRQVAAESQVEVVEFPKLARSVYYTTQINQQIPFQLYRAIAHVLTYVLQMK 349


>gi|323341371|ref|ZP_08081615.1| flagellar biosynthesis/type III secretory pathway protein
           [Lactobacillus ruminis ATCC 25644]
 gi|323091248|gb|EFZ33876.1| flagellar biosynthesis/type III secretory pathway protein
           [Lactobacillus ruminis ATCC 25644]
          Length = 355

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 169/352 (48%), Gaps = 10/352 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             D KTE P+ K+I D+   G    S +     ++    +  +      I   +      
Sbjct: 3   DKDGKTEKPTPKRIRDSRKRGEVAKSPDVVAAVALFVFAMLFVPLCEFSINHFSPYFVNY 62

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVI----PGLLLFMMFGIGSYLIQRIPVLNLN 121
           L       L +   ++  L  ++  A  ++     P +L+ ++ GI   ++Q   +    
Sbjct: 63  L-----EMLANPDQMIGSLGKIAFQAILMIFIMTGPFMLIAIVIGIVGNIVQVGLLFTAT 117

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
            +KP FK+++   G+K+++S+  L N  KS VK+I+VG +      E   T+        
Sbjct: 118 PLKPDFKKLNPLNGLKQMFSLRALQNLAKSLVKLIIVGYLCYKKYVETIPTLTSLSEVGT 177

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
             +L       + +   I + +  ++V D  +  +     LKMSKQEIKDE+KQ  G+P 
Sbjct: 178 GKVLLFMLNICKDLATQIGILLVVVSVFDYAFQRYTHMKSLKMSKQEIKDEMKQMEGDPQ 237

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K ++K+  R       +     AT+++ NPTH A+A++Y       P ++AKG + +A 
Sbjct: 238 VKAQRKAKHREM-IRNAVAQVKDATVVLANPTHLAIAIKYDAEGAGVPQVLAKGADDVAM 296

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++ A + N+PI E   LAR+L+ +V     IP  FY+A+A++I  +Y  +
Sbjct: 297 RIKEEAKKQNVPIIENKPLARALYPKVDAGDFIPVEFYEAIAEVIALVYKLE 348


>gi|163800125|ref|ZP_02194026.1| flagellar biosynthetic protein [Vibrio sp. AND4]
 gi|159175568|gb|EDP60362.1| flagellar biosynthetic protein [Vibrio sp. AND4]
          Length = 375

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +  +K+E  S +K++ A  EG  P ++E +     LA  ++     +    S+ S
Sbjct: 1   MSEQ-SSQDKSEKASQQKVKKARQEGQIPRAKEFTTALIFLAVTMFFYSQLNSTWESM-S 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     + T+  LE+   +V            +++P   + ++   GS ++    +  L
Sbjct: 59  GVFRYNMTLTKADLENPKQLVEHFGQSLAVLIEMLLPLFTVIIIVTCGSSMVLGGWMFRL 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P   +++   GIKRI+S  +LV  +KS VK++++  I+   L  +   +L   +  
Sbjct: 119 ASVMPKLSKLNPISGIKRIFSTRSLVELVKSTVKVLVIFGILYGYLNSHLQPLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      + + L+++   +    V+DI +   +   +L+M+KQE+K+E K + G P
Sbjct: 179 LSQGFSLIMSILFEGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQELKEEFKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTH+A+AL+Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIDKMVPTADVVITNPTHFAVALKYEPSLSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  AIP   Y A+A ++  +   K
Sbjct: 299 MHIQRIARENKVEIINSPPLTRSIYHTTAIEQAIPSQLYIAIAHILTYVLQLK 351


>gi|34558296|ref|NP_908111.1| flagellar biosynthesis protein FlhB [Wolinella succinogenes DSM
           1740]
 gi|34484015|emb|CAE11011.1| FLAGELLAR BIOSYNTHETIC PROTEIN FLHB [Wolinella succinogenes]
          Length = 352

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/352 (28%), Positives = 174/352 (49%), Gaps = 5/352 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    + KTE PS KKIE A  +GN P S E  +F  +L  LI +   F+  +     
Sbjct: 1   MADE---EEKTEEPSGKKIEKAREDGNVPKSPEVVVFFGLLVGLILIYVLFTYWVDGTGR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
             H +  +    +       + L   ++L    LVIP  +  M+ G+   + Q   +L+ 
Sbjct: 58  VFHQV--TPYFHEEIGRKDAISLAISIALEYFLLVIPLFIALMIIGVAGNVSQFGFLLSS 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     VK++    I           +       
Sbjct: 116 KAIEPKFSKLNPITGLKNLFSLKKLLDGTLLTVKVLTAFGIGFWVFLSFIGELTTVSLFP 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         +  ++LLF   +  +D     +Q++  L+M+KQE+KDE KQ  GNP
Sbjct: 176 LFDQMRWFKDKALILAAILLLFFFVMASIDFAIKRYQYFKSLRMTKQEVKDEYKQMEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +       +MM+    A ++ITNPTHYA+ALRY   +  AP ++AKG + +A
Sbjct: 236 EIKRKIRQLMMQAAMKRMMQQLPTADVVITNPTHYAVALRYNTQKERAPRVIAKGVDFMA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++++IA EH I I E  +LAR L+K   ++  IP   ++AVA+++  +Y  
Sbjct: 296 IRIKEIAREHEIQIVENKTLARELYKNADVDKEIPETLFQAVAEVLAYVYKL 347


>gi|332187868|ref|ZP_08389601.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17]
 gi|332012029|gb|EGI54101.1| flagellar biosynthetic protein FlhB [Sphingomonas sp. S17]
          Length = 375

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 5/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      KTEAP+ K+ + A  +G    SR+ +    ++A + +L+F     + +  +
Sbjct: 1   MSE---GGEKTEAPTQKRRQKAREDGQILRSRDLAAALVMMAGIAWLMFAGPTLLGACKA 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +       +   +ED      L+          +     + ++  I S         N 
Sbjct: 58  VMAASF-QFSHADVEDFEPFRPLM-EAGWKLLPSLASLFAVTIVATIASQAGLGSLQFNP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   +++   G+KRI+ +       KS +KI+L+G +    L  +    L    ++
Sbjct: 116 KALTPKPSKLNPASGLKRIFGMQGWTELGKSLLKIVLLGALGGYMLWTSSRATLGLAQSD 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +S +     T   +L+++   +  +   D+     Q  SKLKM+KQEIKDE K+S GNP
Sbjct: 176 LNSAIGSLGGTFITILLVMGFGLVLIAGFDVPIQIFQLLSKLKMTKQEIKDEHKESEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
             K   ++  R      +  A   A +I+TNPTH+A+ALRY + +++ PV+VAKG+   A
Sbjct: 236 EAKAHIRAKQREMSHRAVRAAVQEAHVILTNPTHFAVALRYERGKDEVPVVVAKGRGATA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             +R++A E   P+ E P LAR+++        +    Y+A+A ++  ++
Sbjct: 296 LAIRELAAELATPVLEYPQLARAVYYTSREGQEVRADLYQAIAVVLAFVF 345


>gi|212702654|ref|ZP_03310782.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098]
 gi|212673926|gb|EEB34409.1| hypothetical protein DESPIG_00682 [Desulfovibrio piger ATCC 29098]
          Length = 347

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 175/347 (50%), Gaps = 3/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ K++ D+  +G    S++     +++A  +YLL   S  + ++ +     +
Sbjct: 2   SSEKTEQPTPKRLRDSREKGQVAKSQDVPSALTVMAVAVYLLAMSSDMLNTMQTMGEAPM 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               +   E +      +T   L A R+ +P + + M+  + + L+Q   + ++    P 
Sbjct: 62  LLMDRPFEEALP---LAVTSTLLCALRVALPLIGMVMVVALCANLMQVGVLFSVQAAMPK 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + +S+ +  K+++S+ NLV F+K+ +K++++G  + +  ++    +      +   +  
Sbjct: 119 LENLSMNKWFKQVFSLKNLVEFLKNIIKVLILGISVYVIFSDYMPQLFRIPQGDIGDMWR 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                   ++++       +   D  +   Q+  +  MSK+E+K E K+S G+P+IK ++
Sbjct: 179 LLGSVCGDLVLVSAGVFCVIAAADWCFQRWQFNKQHMMSKEEVKREFKESEGDPLIKGKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K + +  I    +    +A +++TNPTH+A+AL Y +     PV++AKGQ ++A++M + 
Sbjct: 239 KQLHQEMIAQNQIANVRKAKVLVTNPTHFAVALDYEKDRTPLPVILAKGQGVLAQRMIET 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E  IPI     LARSL++Q   N+ IP      VA+++  +   +
Sbjct: 299 AREEGIPIMRNVPLARSLYEQGTENAYIPQDLIGPVAEVLRWVQSLR 345


>gi|16082735|ref|NP_395181.1| needle complex export protein [Yersinia pestis CO92]
 gi|31795273|ref|NP_857735.1| needle complex export protein [Yersinia pestis KIM]
 gi|31795476|ref|NP_857930.1| needle complex export protein [Yersinia pestis KIM]
 gi|45478537|ref|NP_995364.1| putative type III secretion protein YscU [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51593916|ref|YP_068483.1| yscU; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108793657|ref|YP_636807.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|149192692|ref|YP_001293924.1| putative type III secretion protein [Yersinia pestis CA88-4125]
 gi|165927774|ref|ZP_02223606.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940072|ref|ZP_02228606.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011729|ref|ZP_02232627.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214469|ref|ZP_02240504.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401916|ref|ZP_02307402.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422435|ref|ZP_02314188.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422465|ref|ZP_02314218.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422883|ref|ZP_02314636.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426855|ref|ZP_02318608.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186897581|ref|YP_001874692.1| YscU/HrpY family type III secretion protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229896863|ref|ZP_04512023.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|229900218|ref|ZP_04515354.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491102|ref|ZP_06208174.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM
           D27]
 gi|294496841|ref|YP_003560538.1| needle complex export protein [Yersinia pestis Z176003]
 gi|322836573|ref|YP_004210069.1| type III secretion appartus protein YscU [Yersinia pestis Java 9]
 gi|57015240|sp|P69986|YSCU_YERPE RecName: Full=Yop proteins translocation protein U
 gi|57015241|sp|P69987|YSCU_YERPS RecName: Full=Yop proteins translocation protein U
 gi|475126|gb|AAA27681.1| yscU [Yersinia pseudotuberculosis]
 gi|2996233|gb|AAC62556.1| Yop proteins translocation protein U homolog [Yersinia pestis KIM
           10]
 gi|3822064|gb|AAC69784.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832467|emb|CAB54924.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357159|gb|AAS58555.1| putative type III secretion protein YscU [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591613|emb|CAF25417.1| yscU; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782204|gb|ABG16259.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|148872350|gb|ABR14840.1| putative type III secretion protein [Yersinia pestis CA88-4125]
 gi|165911982|gb|EDR30625.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920210|gb|EDR37511.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989336|gb|EDR41637.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204362|gb|EDR48842.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958173|gb|EDR55194.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958672|gb|EDR55693.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958702|gb|EDR55723.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048644|gb|EDR60052.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054154|gb|EDR63981.1| type III secretion appartus protein YscU [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700607|gb|ACC91235.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229686738|gb|EEO78818.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700134|gb|EEO88173.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|262363852|gb|ACY60572.1| needle complex export protein [Yersinia pestis D106004]
 gi|262364009|gb|ACY64346.1| needle complex export protein [Yersinia pestis D182038]
 gi|270334845|gb|EFA45624.1| type III secretion protein, YscU/HrpY family [Yersinia pestis KIM
           D27]
 gi|294352429|gb|ADE66486.1| needle complex export protein [Yersinia pestis Z176003]
 gi|317374477|gb|ADV16652.1| type III secretion inner membrane protein [Yersinia pestis]
 gi|321161347|gb|ADW67053.1| type III secretion appartus protein YscU [Yersinia pestis Java 9]
          Length = 354

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 178/348 (51%), Gaps = 3/348 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KKI DA  +G    S+E    + I+A    L+          +  +   L
Sbjct: 2   SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM---L 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP 
Sbjct: 59  IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I  
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKI
Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A E  +PI +   LAR+L+    ++  IP    +A A+++  +  + I
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346


>gi|294625836|ref|ZP_06704452.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599864|gb|EFF43985.1| type III secretion protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 357

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DAL +G  P+S + +  + +   L+ +          + + + +  
Sbjct: 2   SEEKTEKPTEKKLRDALRDGEVPVSPDVTAAAVLFGALLVMKSAGDYFADHMRALMTIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P 
Sbjct: 62  DFP--ENTRDAAAINRALGHIGIQGLLLMLPFLVGCLVAGVAGGAFQTGLNASLKPVAPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I  
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341


>gi|262167479|ref|ZP_06035185.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27]
 gi|262024051|gb|EEY42746.1| flagellar biosynthesis protein FlhB [Vibrio cholerae RC27]
          Length = 359

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 1/334 (0%)

Query: 20  EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
           + A  +G    S+E +  S ++   + L++F       +   +  L    ++ ++ D+  
Sbjct: 2   QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFE-LSREEIFDLGK 60

Query: 80  IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
           +  ++    ++    ++  L    +  +           +     P   +++   G+KR+
Sbjct: 61  LFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSAEAAMPKLSKMNPLSGLKRM 120

Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
           + + + V  +KS +K++LV  +    +  +   +           ++HA   +   +++I
Sbjct: 121 FGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLLI 180

Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM 259
              +  +  +DI +   Q   +LKM+KQE+KDE K + G P +K R + + R   + +MM
Sbjct: 181 SCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMM 240

Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
            A  +A +IITNP H+++ALRY Q  + APV++AKG + +A K+R+IA E++I I   P 
Sbjct: 241 AALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAPP 300

Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 301 LARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334


>gi|319403947|emb|CBI77535.1| Flagellar biosynthetic protein flhB [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 356

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 124/354 (35%), Positives = 200/354 (56%), Gaps = 1/354 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS E    +++TE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T
Sbjct: 1   MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLT 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L      ++     +  L+  L  S    + P L+L  +  I +  +Q +P   
Sbjct: 61  YFLIQWLERPESWRINTAEDVKHLIYLLGGSVGLALAPILILIPLLSITASAVQNVPRFV 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +  ++P + R+S   G KRIYS   LV F+KS  K+I V  II I   ++    ++ +  
Sbjct: 121 IERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYIIFFKSNTIFINALLT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  ++  +    +  + +  +  +  L  LDI WS   W  +L+M+KQEIK+E K   GN
Sbjct: 181 DASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K R +S++R RIR +M+     AT+I+TNPTH+++ALRY    + APV++AKG +++
Sbjct: 241 PMVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGLDIL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +R+IA EH IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++K
Sbjct: 301 ALHIREIAIEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354


>gi|169831895|ref|YP_001717877.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638739|gb|ACA60245.1| flagellar biosynthetic protein FlhB [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 359

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 176/354 (49%), Gaps = 2/354 (0%)

Query: 1   MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E  D+   KTE P+ +++++A  +G    S + +   ++ A L+         I  + 
Sbjct: 1   MAETRDSGQLKTEQPTPRRLQEARRKGQVAKSLDLTGAVTLAALLLLFFVGLEWFIIRLQ 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
               V L + T   L   +    +L  L+L     V+P + +     +     Q   +  
Sbjct: 61  RLFLVYLQNFTSYSLTAENVNYLVLQSLAL-LGGAVLPAVAVAFFVTVLVSFAQVGFIFA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + +    +R++  +G KRI+S   L  F K+ +KI  VG +    L      +L     
Sbjct: 120 PSVLAVKLERLNPVQGFKRIFSSRGLFEFAKAILKICFVGILCFWVLYARVGDLLVLSVT 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P   LY     +  V          + VLD+ +  +  +  L M++ E++DE +Q+ G+
Sbjct: 180 SPGQGLYLLHNVLLTVAAAAAGAYLLIAVLDLVYQRYAHHKSLMMTRFEVRDEYRQTEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K+  +   R    +++ +   RAT+++TNP H A+ALRY + E DAP++ AKG   +
Sbjct: 240 PHLKSWLRKRQREISMNRIKDEVPRATVVVTNPIHVAVALRYREGEMDAPLVTAKGAGYL 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A++++++A +H +P+ E   LA+ L+++VP+  ++P   Y+AVA+++  IY  K
Sbjct: 300 AERIKELAAQHKVPVVENRELAQYLYRRVPVGESVPVAVYQAVAEILAMIYRLK 353


>gi|206603139|gb|EDZ39619.1| flagellar biosynthesis protein, FlhB [Leptospirillum sp. Group II
           '5-way CG']
          Length = 362

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/352 (29%), Positives = 184/352 (52%), Gaps = 3/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D  + K E P+++K+E A  EG    SRE      +LA L+         +  + +
Sbjct: 1   MA--DEFEQKQEEPTARKLEKAREEGQVARSREVGSLFFLLAALLLFGSVGHTVVVGLEN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +      A   +L     I   L  +  +  +   P    F+   I ++L Q  PV ++
Sbjct: 59  QMEQGFVEAPSIRL-TPDSIGPYLGKILWNTLKTGFPLWGGFLAASILAFLFQGPPVWSV 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P ++RVS  +G+ R++S  +L+   K  VK++LV  ++  SL  ++  +    +A 
Sbjct: 118 KALVPKWERVSPVKGMGRLFSGRSLIELAKYLVKVLLVMFVVLWSLRGDWERLPALQAAG 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H         +R  L  ++     + +LD      Q    L+M++ EI++E K++ G+P
Sbjct: 178 VHRFFGALTGFLRDALYRLIPLFVVIAILDFLLQRIQLNRSLRMTRSEIREEFKETEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +++R +SI R+  R +MM     AT+++TNPTH+A+A+RY      APV+VAKGQ+ +A
Sbjct: 238 HVRSRIRSIQRAMARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             +RKIA E  +P+ E P LAR+L+   P++  IP  FY+AVA+++  +Y +
Sbjct: 298 LNIRKIAREARVPVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 349


>gi|188992470|ref|YP_001904480.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734230|emb|CAP52438.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris]
          Length = 357

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++DA  +G  PIS + +  + +LA L+ +    S  +  + + + +  
Sbjct: 2   SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             AT  +  D + +   L  + +    L +P +   +  G+    +Q     +L  V P 
Sbjct: 62  DFATNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K  ++G ++   L     T++      P  I  
Sbjct: 120 FDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  +  +  + +L    +   D    +  +    +MSK E K E K+S G+P +K ++
Sbjct: 180 IGWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y       P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRAY 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L  +V +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALH-EVELGEAVPESLFETVAVVLRWV 341


>gi|319405388|emb|CBI79007.1| Flagellar biosynthetic protein flhB [Bartonella sp. AR 15-3]
          Length = 356

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/354 (34%), Positives = 200/354 (56%), Gaps = 1/354 (0%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS+     ++KTE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T
Sbjct: 1   MSDAKPDKESKTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICVFISFPAISKLT 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L      ++     +  L+  +  +    + P L+L  +  I +  +Q +P   
Sbjct: 61  YFLVQWLERPESWRINTAEDVKHLIYLVGGNVGLALAPILILIPLLSITASAVQNVPKFI 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +  ++P + R+S   G  RIYS   LV F+KS  K+I V  II +   ++    ++ +  
Sbjct: 121 IERIRPQWSRISPANGFNRIYSKAGLVEFLKSLTKLIGVSLIIYLIFFKSNTIFINALLT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  ++  +    +  + +     +  L  LDI WS   W  +L+M+KQEIK+E K   GN
Sbjct: 181 DASALPKYIHKELINLSLSFTTAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K R +S++R RIR +M+     AT+I+TNPTH+++ALRY    + APV++AKGQ+++
Sbjct: 241 PVVKARMRSLSRDRIRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGQDIL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +R+IA EH+IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++K
Sbjct: 301 ALHIREIAIEHDIPIFENITLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354


>gi|317486796|ref|ZP_07945612.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia
           3_1_6]
 gi|316921959|gb|EFV43229.1| YscU/HrpY family type III secretion protein [Bilophila wadsworthia
           3_1_6]
          Length = 346

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 169/345 (48%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P+ K++ ++  +G+   S++     ++LA  +Y++      + S+ + + + +  
Sbjct: 3   DKTEQPTPKRLRESREKGDVCKSQDVPSALTVLALSVYIVVMGGHLLESLLAMMELPMKL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +    E          H+   A  +V P + L M   + + L Q   +       P  +
Sbjct: 63  LSTPYAEAAPRAAEATFHI---AVSIVAPLVGLVMAVALVANLGQVGILFAFKGAMPKLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            VS  +  ++++S+ NLV F+K+ +K+ ++G  + + + ++  T+         ++    
Sbjct: 120 NVSPSKWFQKVFSMKNLVEFLKNIIKVTVLGVTVWVVMRDHLPTLFAIQRGTIWTMWEVL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V+ +L+M       +  +D  +   Q+     MSK E+K E K+  G+P +K ++K 
Sbjct: 180 GMAVKDLLLMAAGVFCVIAAVDYLFQKWQYTKNHMMSKDEVKREYKEMEGDPQVKGKRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +    +    +A +++TNPTHYA+AL Y +     PV++AKG+  +A++M ++A 
Sbjct: 240 LHQEMLSQNALGNVRKAKVLVTNPTHYAVALDYEKDRTPLPVILAKGEGFLAQRMIRVAQ 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           E  IPI     LARSLF+    N+ IP      VA+++  +   +
Sbjct: 300 EEGIPIMRNVPLARSLFENGTENAYIPKDLIGPVAEVLRWVQSLQ 344


>gi|16125329|ref|NP_419893.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15]
 gi|221234068|ref|YP_002516504.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000]
 gi|1147737|gb|AAA85127.1| third gene in fliQ operon; membrane protein homolog [Caulobacter
           vibrioides]
 gi|13422379|gb|AAK23061.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus CB15]
 gi|220963240|gb|ACL94596.1| flagellar biosynthesis protein FlhB [Caulobacter crescentus NA1000]
          Length = 361

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 110/353 (31%), Positives = 200/353 (56%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++  P++KTE PS+KK+ DA  +G+   S +    +S+   +  +L         + +
Sbjct: 1   MADDTDPESKTEEPSAKKLSDARAKGDVIKSADIPQLASLAGAVSVILLAGGWLTRDLMA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   +A A    L     ++ L   L  +   LV+  +++    G  +++ Q   +L  
Sbjct: 61  ALTPFIAHAGTIDLSSGGAMIVLKQALLAALPALVL-VMVVTAFAGAAAHIAQTGFLLTP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F+++ L +G+ RI+  + +V F+KS VK +L G I    L  +   + + +  +
Sbjct: 120 EKIKPDFQKLDLIKGLGRIFGPDGMVQFLKSAVKFLLTGVIAYFVLKPHVGEVRNLVGMD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +++  A    + +LI ++L +   +  D  W   ++ ++++M+ QE+K+E KQS G+P
Sbjct: 180 PAAMIPEAMKLSKGLLIAVILLLVATSAFDYFWQRMRFMNRMRMTLQEVKEEFKQSDGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK +++ I   R R +MM+A  +AT+++ NPTHYA+AL+Y Q E  AP+ VAKG + +A
Sbjct: 240 HIKGKRRQIQMQRSRQRMMQAVPKATVVVMNPTHYAVALKYEQGETPAPLCVAKGVDDLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R +A EH +P+ E+P LAR+L+  V I+  IP   ++AVA++I  I + K
Sbjct: 300 LKIRAVAEEHGVPVLEDPPLARALYASVEIDEEIPVEHFEAVAKVISFILNGK 352


>gi|85058003|ref|YP_453705.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str.
           'morsitans']
 gi|84778523|dbj|BAE73300.1| flagellar biosynthetic protein FlhB [Sodalis glossinidius str.
           'morsitans']
          Length = 387

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 175/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   K+EAP+  +++ A  EG  P S+E   +  +L+    L          +  
Sbjct: 1   MAE-ESDLEKSEAPTPHRLQKARKEGQVPRSKELVSWLMLLSGWSLLWLAGGHLAQGMGL 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L  +      D   ++   + L   A     P +L   +   G+ ++    + + 
Sbjct: 60  MLESGLTFSFHIN-GDRHWLLAQFSGLVRQALLACAPLILGVTLVAAGAPMLIGGVMFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V    KR++   G+KR++S+  +  F+K+  K+ LVG     +L   +  M       
Sbjct: 119 KAVSLDLKRLNPFSGLKRLFSMQMIAEFIKTLFKVCLVGGACGTALWFVWPRMTQLAQGA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           PH ++  +   + + +++I+L +  +   DI +       KL+MS+ +I++E K+  G+P
Sbjct: 179 PHRVMAESLSLISQCVLVIILALIPVVGFDILYQLFSHMKKLRMSRHDIREEYKEQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+  +   R + + +MM+  ++A ++I NPTHYA+AL+Y Q     P L+AKG   +A
Sbjct: 239 QLKSLIRQRQRQQAQQRMMQDVAKADVVILNPTHYAVALKYEQMRMTTPRLLAKGAGAVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R+ A +H IP    P LAR+LF+   I SAIP   Y AVA+++  +Y  +
Sbjct: 299 LNIRQRAEQHRIPTLVAPPLARALFRHCEIGSAIPVALYGAVAEVLAWVYGLR 351


>gi|110632668|ref|YP_672876.1| flagellar biosynthesis protein FlhB [Mesorhizobium sp. BNC1]
 gi|110283652|gb|ABG61711.1| flagellar biosynthetic protein FlhB [Chelativorans sp. BNC1]
          Length = 363

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 135/350 (38%), Positives = 217/350 (62%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE  + KKI D + +G  P SREA + +S LA L++++FF       +  
Sbjct: 1   MAEGADKESKTEEATEKKIRDTVEKGQLPFSREAPVLASFLAILVFVVFFAEDRAVQLAG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L + +  A    L+  +  + +   + L   ++V   +LL +  G+ + ++Q  P   L
Sbjct: 61  FLAIFIERADGWSLKTQTDAIAIYRIVFLQIGKVVGIVMLLLVAAGVSASILQNTPRFVL 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   RVSL +G  R++    LV F KS  K+++VG ++  +L      +L  +  +
Sbjct: 121 ERIQPKLSRVSLAKGWSRLFGTRGLVEFAKSVGKMLVVGALVAFTLRHADTRLLSGMVTH 180

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +        V  +LI I LF+  + V D+ WS   W   L+MS+QE+KDE KQ+ G+P
Sbjct: 181 PVAFTVTIRDLVINILIAIALFMTLVAVADLVWSRFSWRQDLRMSRQEVKDEQKQTDGDP 240

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ R +S+AR R R +MM A  +AT++I NPTHYA+ALRY + ++ APV+VAKGQ+L+A
Sbjct: 241 LMRARLRSVARDRARRRMMSAIPQATLVIANPTHYAIALRYQRDKDAAPVVVAKGQDLVA 300

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            ++R++A EHNIP+FEEP+LARS++KQV ++S IPP FYKAVA+L+ ++Y
Sbjct: 301 LRIRELAREHNIPVFEEPALARSMYKQVSVDSLIPPQFYKAVAELVRRVY 350


>gi|319406964|emb|CBI80601.1| Flagellar biosynthetic protein flhB [Bartonella sp. 1-1C]
          Length = 356

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 125/354 (35%), Positives = 201/354 (56%), Gaps = 1/354 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS E    +++TE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T
Sbjct: 1   MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPVFASLVSFSLICVFISFPAISKLT 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L      ++     +  L+  L  SA   + P L+L  +  I +  +Q +P   
Sbjct: 61  YFLIQWLERPESWRINTAEDVKHLIYLLGGSAGLALAPILILIPLLSITASAVQNVPKFV 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +  ++P + R+S   G KRIYS   LV F+KS  K+I V  II +   ++    ++ +  
Sbjct: 121 IERIRPQWSRISPANGFKRIYSKAGLVEFLKSLTKLIAVSLIIYMIFFKSNTIFINALLT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  ++  +    +  + +  +  +  L  LDI WS   W  +L+M+KQEIK+E K   GN
Sbjct: 181 DASALPKYIHKELINLSLSFITAVIALVGLDIAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K R +S++R RIR +M+     AT+IITNPTH+++ALRY    + APV++AKG +++
Sbjct: 241 PMVKARMRSLSRDRIRRRMIANVPTATLIITNPTHFSVALRYKPPLDYAPVVIAKGLDIL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +R+IA EH IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++K
Sbjct: 301 ALHIREIAVEHEIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354


>gi|296274004|ref|YP_003656635.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM
           7299]
 gi|296098178|gb|ADG94128.1| flagellar biosynthetic protein FlhB [Arcobacter nitrofigilis DSM
           7299]
          Length = 350

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 182/352 (51%), Gaps = 7/352 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P++KK+E A  EGN P S E    + +L   +Y+LF+ +    S+  
Sbjct: 1   MADDTD---KTEEPTAKKLEKARGEGNVPKSGEVVGAAILLFGTVYMLFWSTYTYDSIKK 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +     Q      +    +   +  +    + P  L+ ++  I   ++Q   +   
Sbjct: 58  LMIYIFNKIGQELTS--TDYYNMTNAIITTIFYSLAPFFLVVILLAIILNVVQFGFL--T 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N +K  F++++   G+K ++S+  L+   K   K+ L+  ++TI     Y   +  +  +
Sbjct: 114 NPIKLKFEKLNPVSGLKGLFSLKKLLEATKLLAKLTLIVFVMTILFGLTYKGFIAMMDKD 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S L   F  +   +  IL  +    ++D  ++ H ++  LKMSK+E+KDE K   G+P
Sbjct: 174 ITSSLDAMFTLLLYFVGAILFIVILFAIIDYFFTRHYYFKSLKMSKEEVKDEHKNMEGDP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + K I       +M  +   A ++ITNPTHY++AL+Y    N AP +VAKG + +A
Sbjct: 234 KVKAKIKGIQYKLHYERMRASAKDADVVITNPTHYSVALQYDSAVNSAPKVVAKGIDFLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R +A E+ IPI E P+LAR+L+ Q+ I+  IP  FY+A+A++   ++  
Sbjct: 294 LKIRDVAKENKIPIIENPALARALYDQIQIDQEIPGEFYQAMAEVFSYVFEL 345


>gi|21230687|ref|NP_636604.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769318|ref|YP_244080.1| type III secretion system protein HrcU [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112276|gb|AAM40528.1| HrcU protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574650|gb|AAY50060.1| HrcU protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 357

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++DA  +G  PIS + +  + +LA L+ +    S  +  + + + +  
Sbjct: 2   SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              T  +  D + +   L  + +    L +P +   +  G+    +Q     +L  V P 
Sbjct: 62  DFTTNTR--DATALHRALGRIGIQGVLLTLPFVTACLAAGLIGTFVQTGLNASLKPVTPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K  ++G ++   L     T++      P  I  
Sbjct: 120 FDSLNPVNGVKKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPPADIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  +  +  + +L    +   D    +  +    +MSK E K E K+S G+P +K ++
Sbjct: 180 IGWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y       P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDEGALELRAY 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L  +V +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALH-EVELGEAVPESLFETVAVVLRWV 341


>gi|46562156|ref|YP_009141.1| hrpY/hrcU family type III secretion protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46447693|gb|AAS94359.1| type III secretion protein, hrpY/hrcU family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235485|gb|ADP88338.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris RCH1]
          Length = 346

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 84/345 (24%), Positives = 167/345 (48%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P+ K++ +A  +G+   S++     ++LA   Y  F       S+     + +  
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMRH 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 E +  +   + H   +A  +V+P + L MM      L Q   +       P  +
Sbjct: 63  MAMPFDEALPLLGTAVVH---AAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +S  +  K+++S+ N V  +K+ +K+ ++G  +   ++++   +      +   +L   
Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLKVL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +++M  +    +  LD  +   Q+  +  M+K E+K E K+  G+P IK ++K 
Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +    +    +A +I+TNPTH+A+AL Y +     PV++AKG+ L+A++M +IA 
Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           E  IP+ +   LARSLF +   N+ IP      VA+++  +   +
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSLQ 344


>gi|145597135|ref|YP_001154599.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|145212903|gb|ABP42309.1| type III secretion protein [Yersinia pestis Pestoides F]
          Length = 354

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 177/348 (50%), Gaps = 3/348 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KKI DA  +G    S E    + I+A    L+          +  +   L
Sbjct: 2   SGEKTEQPTPKKIRDARKKGQVAKSNEVVSTALIVALSAMLMGLSDYYFEHFSKLM---L 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A Q  L     + +++ ++ L    L  P L +  +  I S+++Q   +++   +KP 
Sbjct: 59  IPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG KRI+SI +LV F+KS +K++L+  +I I +  N  T+L   +     I  
Sbjct: 119 IKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +R+++++  +    +++ D  + Y+Q+  +LKMSK EIK E K+  G+P IK+++
Sbjct: 179 LLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M E   R+++++ NPTH A+ + Y + E   P++  K  +   + +RKI
Sbjct: 239 RQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A E  +PI +   LAR+L+    ++  IP    +A A+++  +  + I
Sbjct: 299 AEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346


>gi|327484648|gb|AEA79055.1| Flagellar biosynthesis protein FlhB [Vibrio cholerae LMA3894-4]
          Length = 359

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 1/334 (0%)

Query: 20  EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
           + A  +G    S+E +  S ++   + L++F       +   +  L    ++ ++ D+  
Sbjct: 2   QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFE-LSREEIFDLGK 60

Query: 80  IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
           +  ++    ++    ++  L    +  +           +     P   +++   G+KR+
Sbjct: 61  LFDIIGGSLVNLLLPLLMILTTLFIAALIGAAGVGGISFSAEAAMPKLSKMNPLSGLKRM 120

Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
           + + + V  +KS +K++LV  +    +  +   +           ++HA   +   +++I
Sbjct: 121 FGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLLI 180

Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMM 259
              +  +  +DI +   Q   +LKM+KQE+KDE K + G P +K R + + R   + +MM
Sbjct: 181 SCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMM 240

Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
            A  +A +IITNP H+++ALRY Q  + APV++AKG + +A K+R+IA E++I I   P 
Sbjct: 241 AALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAPP 300

Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 301 LARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 334


>gi|83646009|ref|YP_434444.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC
           2396]
 gi|83634052|gb|ABC30019.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC
           2396]
          Length = 345

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 172/342 (50%), Gaps = 5/342 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ DA  +G    S+E    + ++A    L        YS+   L  L+  
Sbjct: 3   EKTEKPTPKKLLDARKKGQVAHSKELVSTAMMIAMYGLLF----ASGYSLVEALQSLIDL 58

Query: 69  ATQRKLEDISHIVF-LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             +   +     +  +L  +   +  +++P +LL ++  + S +    P+  +  VK   
Sbjct: 59  PARFYGQPFGEALQAVLNGVFEKSLDILLPFILLVIVTAVVSNVGHVGPLFAMESVKFDL 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K++   EG+K+++S+ +L+  +KS VKI+ +  +I   +T N   +          I+  
Sbjct: 119 KKIDPVEGVKKLFSVRSLMELLKSIVKILFLSILIYWVITANLNDIRKLPHCGSDCIMPF 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + ++ ++ ++    + VLD  +  H+   +L+M+K E+K E K + GNP +  ++K
Sbjct: 179 IGHLMLQLAMVSMVAFVIVAVLDFLYQKHEHQKQLRMTKDEVKREYKDAEGNPEVIGQRK 238

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            I R  +   M+    +A++I+TNPTH A+ + Y   +   P ++ K +N  A++++KIA
Sbjct: 239 QIHREMLDGGMISQIKKASVIVTNPTHIAIGIYYDGDKRSLPTVILKAKNTTAQRVKKIA 298

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +  +PI E   LAR+L+ Q  + + IP    + VA+++  +
Sbjct: 299 AKEGVPIMENIPLARALYAQAELENYIPSELIEPVAEVLKWV 340


>gi|124268261|ref|YP_001022265.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
 gi|124261036|gb|ABM96030.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
          Length = 387

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++     ++    S +K++ A  +G  P SR+   F+++ A +  L          +T 
Sbjct: 1   MADQ-GAQDRNLPASERKLKKAREDGQVPRSRDLGHFAAVAAGIALLAAMAPTATGWMTR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       L   + +   L  L +  +  ++P   + ++  + S L        L
Sbjct: 60  LLQSGLR-FDAGTLNGTASMSERLAELGVQFAWAMLPIGAVMVLAALASSLTVGGWNFTL 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+ R+ S + LV+ ++S V  +++G +    L++N F     ++  
Sbjct: 119 KAIEPKFSKLNPLTGLPRMLSADRLVDTVRSCVLALVIGLVGAFYLSQNVFQFTSTLTLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A   V   L+ +LL +A   ++D+     Q   +LKMS QE+K E K++ GN 
Sbjct: 179 LPTALAQAGNDVLYGLMFLLLALAVFALIDVPLQRFQHAKRLKMSHQEMKQEHKENEGNV 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + K+  R     +M+ A  +A +++ NPTHYA+AL+Y +    AP +VAKG +L+A
Sbjct: 239 EVKAKVKARMREMANRRMLAAVPKADLVVMNPTHYAVALKYEEGRGGAPRVVAKGADLMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A +  +P+ + P LAR+L+    ++  IP   Y AVAQ++  +Y  +
Sbjct: 299 MRIRDLAKDSKVPVLQAPVLARALYAHAELDREIPIALYTAVAQVLAYVYQLR 351


>gi|94986973|ref|YP_594906.1| flagellar biosynthesis protein FlhB [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731222|emb|CAJ54585.1| Flagellar biosynthesis pathway, component FlhB [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 357

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 190/354 (53%), Gaps = 5/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ +   KTE  + K+ ++A +EG+ P S E +   +  A ++ L  +         +
Sbjct: 1   MSDDPS---KTEKATPKRRQEARSEGSVPKSEEVTKALTTAAGMLGLAIYSGVMGRHFET 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
             + +   + + ++     +  L  +++   + L++P LL   +    S  +Q   +   
Sbjct: 58  IFYYIFTESFRFEV-TAQSVYALFIYVAQEIAILLMPILLFIAVTAWISLRVQVGALWTT 116

Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              K  + + ++ +G+K ++ S   LV  ++S V++I++G +  + +   +   L    A
Sbjct: 117 KVFKFKWSKFNIIKGLKGMFASQQTLVRLLRSLVQVIVIGIVPYMIIKGEFSNFLPLYYA 176

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P  +  +   T   +++  L+ +  + V D+ ++ + +   LKM+KQEIKDE KQ  G+
Sbjct: 177 SPSGVADYMLNTGIVLVLYTLIPMTIIAVADLVYNRYSYEENLKMTKQEIKDESKQQEGD 236

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           PI+K +Q+      + ++MM+   +A +++TNP H A+ALRY   E  AP+++A G + +
Sbjct: 237 PIVKQKQRQKMMQMMTNRMMQDVPKADVVVTNPKHIAVALRYNALEAPAPLVLAIGVDRV 296

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K+++IA E+NIPI E   LAR+L+K V +   IP   YKAVA ++  ++  K
Sbjct: 297 AEKIKEIARENNIPIRENVPLARALYKAVGVGEMIPEELYKAVAAILASVWRLK 350


>gi|296121646|ref|YP_003629424.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM
           3776]
 gi|296013986|gb|ADG67225.1| flagellar biosynthetic protein FlhB [Planctomyces limnophilus DSM
           3776]
          Length = 360

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 177/351 (50%), Gaps = 2/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++ D KTE P+ ++  +A  +GN   S++    ++++     +L++    +    +
Sbjct: 1   MAEDESGD-KTEDPTERRRSEAREQGNVVKSQDL-TAAALMLGSAGVLWWHGRNVAEYMA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     SA      D + +V L       +   V P L+L  +  I   L+Q   + + 
Sbjct: 59  RLMRNSLSAAPWTTFDQNDLVSLAWAHLGESGWQVAPLLILLALAAIAINLLQVGFLFSP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P ++R++   GI+R++SI ++     +  K+ L+G++ T  + +            
Sbjct: 119 EVLQPKWERINPLSGIQRLFSITSVARLGANLAKLALLGSVATWFVYDGLHRFAALAHQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +   A   +  ++  + L I    + D  + + ++   LKMSKQEI+DE K+  G+P
Sbjct: 179 LTVVAVVAGSELISLIFWMALAIFVAALADFAFQWWKYEQDLKMSKQEIRDEYKEMDGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +I+ R++   R   + + +++   A ++ITNPT  A+A++Y      AP++VAKG   +A
Sbjct: 239 LIRMRRREAHRKLTQGRELQSVKTADVVITNPTEIAIAIKYDVATMPAPIVVAKGAGELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R++A E+ +PI E   +AR+L+K   +   IP   Y   A+++  +Y 
Sbjct: 299 AQIRRLAAENGVPIIERKPVARALYKLTRVGDPIPSDLYAVFAEILAYVYK 349


>gi|120586865|ref|YP_961210.1| YscD family type III secretion protein [Desulfovibrio vulgaris
           subsp. vulgaris DP4]
 gi|120564279|gb|ABM30022.1| type III secretion protein, YscU/HrpY family [Desulfovibrio
           vulgaris DP4]
          Length = 346

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 84/345 (24%), Positives = 167/345 (48%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P+ K++ +A  +G+   S++     ++LA   Y  F       S+     + +  
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMRH 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 E +  +   + H   +A  +V+P + L MM      L Q   +       P  +
Sbjct: 63  MAMPFDEALPLLGTAVVH---AAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +S  +  K+++S+ N V  +K+ +K+ ++G  +   ++++   +      +   +L   
Sbjct: 120 NISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFAIPDGDIGLLLKVL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +++M  +    +  LD  +   Q+  +  M+K E+K E K+  G+P IK ++K 
Sbjct: 180 GTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +    +    +A +I+TNPTH+A+AL Y +     PV++AKG+ L+A++M +IA 
Sbjct: 240 LHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAR 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           E  IP+ +   LARSLF +   N+ IP      VA+++  +   +
Sbjct: 300 EEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSLQ 344


>gi|114765217|ref|ZP_01444349.1| flagellar biosynthesis protein B [Pelagibaca bermudensis HTCC2601]
 gi|114542352|gb|EAU45380.1| flagellar biosynthesis protein B [Roseovarius sp. HTCC2601]
          Length = 375

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 184/358 (51%), Gaps = 5/358 (1%)

Query: 1   MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M++ D   DNKTE P+ +K+  A  +G+   S+EA    ++L+      F        + 
Sbjct: 1   MADQDEDKDNKTEEPTERKLRKAREKGDVASSKEAGNVMAVLSLFAITAFVLPSVSAPLA 60

Query: 60  SDLHVLLASATQR----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
                +L SA Q      L  +  +  +   +      L+ P + L ++  +    +Q  
Sbjct: 61  GVFRNVLESAGQVHVGTDLSGLRDLGAVSWKVLRGVGILLGPLMALMVIGALAGVALQGE 120

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V+    +KP + ++S   G KR++S+   V F KS  K++LVG I    +      +  
Sbjct: 121 VVVASERLKPKWSKISPISGFKRLFSLAAFVEFFKSVTKVLLVGVIAGWVVLNAVGQIWQ 180

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
                P  +         ++L++ L  ++ + V DI W       K +MS +EIKDE+K+
Sbjct: 181 TQGLVPEMVTDFIRAEAARMLLITLALVSVIAVADILWKRFDHRRKQRMSMKEIKDEVKE 240

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           + G+P+I++++ +I R R R ++ +A  RAT+++TNPTH+A+AL+Y    + APV VAKG
Sbjct: 241 TEGDPLIRSKRMNIRRERARQRLAQAVPRATVVLTNPTHFAVALKYENGVDMAPVCVAKG 300

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +L+A ++R++A E+ IP+ E   LAR+L     ++  IP   ++AVA +I  I   +
Sbjct: 301 ADLLAARIRELAKENEIPMVENRPLARALHDVAELDRPIPVEHWEAVAAIIGYIMDLE 358


>gi|307293817|ref|ZP_07573661.1| type III secretion exporter [Sphingobium chlorophenolicum L-1]
 gi|306879968|gb|EFN11185.1| type III secretion exporter [Sphingobium chlorophenolicum L-1]
          Length = 379

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 169/353 (47%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    KTE P++KK++DA  +G+   SR+ +    ++A + ++         SV  
Sbjct: 1   MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVTGP----SVVR 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSL--SASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            L  +L  A + + EDI +        +L    +  V   +L  ++  I    +      
Sbjct: 57  SLSDMLTEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPALLGSLGF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
                 P   +++   G+KR++ +  L+  +KS  K+ L+G I    + +    ++    
Sbjct: 117 RPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSIAKVSLLGAIGVWMIWDRLTEIVGLGK 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           +     +           +++   +  +  +D+     Q   +L MSKQEIKDE K+S G
Sbjct: 177 SGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEIKDEHKESEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K   +      +     +A + A++IITNPTH+A+ALRY   ++ APV+VA+G + 
Sbjct: 237 SPELKGHIRRKQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVARGCDA 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA  +R++A ++ + + + P LAR+++        +    Y AVA ++  ++ 
Sbjct: 297 IAAAIRELADQNGVTVLQYPDLARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349


>gi|307718617|ref|YP_003874149.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM
           6192]
 gi|306532342|gb|ADN01876.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM
           6192]
          Length = 387

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 167/348 (47%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+  KI  A  EG    + E      +L  LI L    S    ++ S     
Sbjct: 32  EDEGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTF 91

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +S +  +    +H             +L +P  ++ +  G+   ++Q   +  +  + P
Sbjct: 92  FSSISSPE---PTHTGRFFVLFLQFFLKLTLPFFVVALCAGVAGNVLQVGFLFTVKPITP 148

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
             +R+  +     KR ++S   L N  K+ +K+  +G +  +++      +++ +     
Sbjct: 149 DLQRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRVPLL 208

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             +      V ++L    +    ++++D  +   Q    LKMS++E+K+E K   G+P++
Sbjct: 209 QGIRFLGALVFRILFEATVVFLAISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R +   R  +   M+     A ++ITNPTHYA+AL Y +   +AP +VAKG + +A +
Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           MR IA EH +P+ E   LAR+L+++V +   IP  +Y  VA ++ K+Y
Sbjct: 329 MRAIAREHGVPLVENRPLARALYQEVEVGDTIPEQYYAVVATILAKVY 376


>gi|90577372|ref|ZP_01233183.1| flagellar biosynthetic protein [Vibrio angustum S14]
 gi|90440458|gb|EAS65638.1| flagellar biosynthetic protein [Vibrio angustum S14]
          Length = 375

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ A D KTE  + +KI  A  +G  P +++ +  +  +A +++  F     I+   +
Sbjct: 1   MSQSSAQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVVVFFYFQI-DAIWQALN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  + +   L      +  L        +L++P   L ++  I S L+    +   
Sbjct: 59  GVFKLNMTISHDGLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWLFYP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++    GIKR++S  +LV  +KS +K+ ++  ++ + L  N   +L   +  
Sbjct: 119 AGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDANLSRLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   ++++ + +    ++DI +   +   +LKM+KQE+K+E K + GNP
Sbjct: 179 LKQGVSLILTILFHGILLMGVALLLFGLIDIPYQKWEHAKELKMTKQELKEEFKSNEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I +   R K+ +A  +A ++I NPTHYA+A++Y  T ++AP +VAKG +  A
Sbjct: 239 EIKQRIRQIQQQFARRKIDKAVPKADVVIVNPTHYAVAIKYDTTLSEAPFVVAKGIDEAA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             ++ IA +H++ I   P L R+++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351


>gi|315638787|ref|ZP_07893959.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           JV21]
 gi|315481005|gb|EFU71637.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           JV21]
          Length = 356

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 103/351 (29%), Positives = 187/351 (53%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +  LLF        V +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVAN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D+  I  ++         ++ P +L  M+ GI   ++Q   +   
Sbjct: 59  LYRYYQSFIGVE--FDLRIIQAIMMKSIFEVLIILAPIVLSIMVAGIIGNVMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  L+  +K  +K+ +V TI  I L +    +      +
Sbjct: 117 KPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVGVVFTIAFIVLLQFVKELPKVELYS 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +         +  ++++    + +LD+     Q++  LKMSKQEIKDE KQ  G+P
Sbjct: 177 LAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+ALRY  T+ +AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AY+HN+ ++E P LAR L+K   ++  IP   +KAV+++   +Y 
Sbjct: 297 LRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKFVYQ 347


>gi|218887105|ref|YP_002436426.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758059|gb|ACL08958.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 356

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 181/354 (51%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    KTE  + K+   A N+GN P S+E +   +ILA  + LL +       + +
Sbjct: 1   MAQRDPS--KTEKATPKRRNKARNKGNVPKSQELTKALTILAGSVGLLSYIDFLAKDMQT 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L +A    + +  +++ LL  L+   + +++P +L           +Q   +   
Sbjct: 59  LFRHFLGNAFGF-IPNQQNVIKLLMWLAGELAAMLLPIMLFIGFTAWLVLRLQVGKLWTT 117

Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              K ++ R ++   +KR++ S    +   KS ++ + +G    I +       L    A
Sbjct: 118 EVFKFNWSRFNILAALKRMFVSPETFMRLGKSLLQALFIGVAPYIIIRREMHNFLPLYYA 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +   I  +   T   ++   L+ +  + + D  ++   +   LKM+K E KDE KQ+ G+
Sbjct: 178 DAQGISAYMLKTGWDMVRYALVPMFIIAIADFWYTRWSYEENLKMTKDETKDERKQAEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+++ +Q+      +  +M++   +A ++ITNPTH+A+ALRY  TE  AP+++AKG + +
Sbjct: 238 PVVRAQQRRKMMQMMAKRMLQDVPKADVVITNPTHFAIALRYDATEAPAPIVLAKGADNL 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K++++A EH +PI E   LA++L+K V +   IP   ++AVA ++  ++  K
Sbjct: 298 AQKIKEVAREHGVPIRENKPLAQALYKAVEVGDMIPAELFQAVATVLASLWKFK 351


>gi|163744325|ref|ZP_02151685.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45]
 gi|161381143|gb|EDQ05552.1| flagellar biosynthetic protein FlhB [Oceanibulbus indolifex HEL-45]
          Length = 372

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 109/357 (30%), Positives = 192/357 (53%), Gaps = 5/357 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D   +KTE P+ KK+ DA  +G+ P SRE      + A L+ L+F     +  +  
Sbjct: 1   MSDEDKS-SKTEEPTEKKLRDARKKGDVPQSRETGTAMLVFALLMILVFVLPSSVGGIVE 59

Query: 61  DLHVLLASATQRKLEDIS----HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            L   L  A    +            +L  L  +    ++P + + ++  +   LIQ   
Sbjct: 60  ALQAPLLEAGVTAIGTGGTGLVEAGSVLKSLGFTLGLAMMPVVGIMVLAALFGVLIQGET 119

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V++   +KP   +++   G KR++S    V F K+ VK++++G I   ++ +   ++   
Sbjct: 120 VVSAERIKPKISKLNPLSGFKRLFSAEAFVEFAKNTVKVLVIGFITVWAVRDIAQSLGQT 179

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
            +  P ++L      VR + ++   F+  + + DI W   QW  K  MS +EI+DE K S
Sbjct: 180 QAFVPETLLAATLQKVRWIFLVTATFLVPIAIADIIWKRAQWKKKQMMSLKEIRDEHKDS 239

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P IK R+  + R+R R ++ +A   A++++TNPTHYA+AL+Y Q  +D PV VAKG 
Sbjct: 240 EGDPQIKGRRAELRRARARQRIAQAIPGASVVLTNPTHYAVALKYEQGVDDVPVCVAKGA 299

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++A+++R++A EH+IP+ E   LAR+L   V ++  IP   ++AVA++I  +   +
Sbjct: 300 DVMAQRIRELAKEHDIPMIENRPLARALHAAVEVDDRIPMEHWQAVAEIIGFVMDLR 356


>gi|319898624|ref|YP_004158717.1| flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73]
 gi|319402588|emb|CBI76133.1| Flagellar biosynthetic protein flhB [Bartonella clarridgeiae 73]
          Length = 356

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 120/354 (33%), Positives = 199/354 (56%), Gaps = 1/354 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS E    +++TE P+  KI     +GN P SRE  +F+S+++  +  +F   P I  +T
Sbjct: 1   MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICIFISFPAISKLT 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L          ++     I  L+  +  S    + P L+L  +  I +  +Q +P   
Sbjct: 61  FFLVQWFERPESWRINTAEDIKHLIYLVGGSVGLALAPILILIPLLNIVASAVQNVPRFV 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +  ++P + RVS   G KRIYS   LV F+KS  K+I V  I+ +   ++    ++ +  
Sbjct: 121 IERIRPQWSRVSPANGFKRIYSKAGLVEFLKSLTKLIGVSLIVYMIFFKSNTIFINALLT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  ++  +    +  + +     +  L  LD+ WS   W  +L+M+KQEIK+E K   GN
Sbjct: 181 DASALPEYIRKELISLSLSFTAAVVALVGLDLAWSRFHWRQQLRMTKQEIKEEHKNLEGN 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K R +S+AR R R +M+     AT+I+TNPTH+++ALRY    + APV++AKGQ+++
Sbjct: 241 PMVKARMRSLARDRTRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGQDIL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +R+IA +++IPIFE  +LAR+L+KQV I+  IP   Y++VA LI  I ++K
Sbjct: 301 ALHIREIAIKNDIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQK 354


>gi|57506049|ref|ZP_00371972.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           RM3195]
 gi|57015657|gb|EAL52448.1| flagellar biosynthetic protein FlhB [Campylobacter upsaliensis
           RM3195]
          Length = 356

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 103/351 (29%), Positives = 186/351 (52%), Gaps = 4/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE P+SKKIEDA  EGN P S++A+   +++  +  LLF        V +
Sbjct: 1   MAGED--QEKTEEPTSKKIEDARQEGNVPKSQDAAAVVTLIVAITLLLFLLGFMGERVAN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                          D+  I  ++         ++ P +L  M+ GI   ++Q   +   
Sbjct: 59  LYRYYQNFIGVE--FDLRIIQAIMMKSIFEVLIILAPIVLSIMVAGIIGNVMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+  +++  +G+K ++S+  L+  +K  +K+ +V TI  I L +    +      +
Sbjct: 117 KPIMPNLSKINPLKGLKNLFSLKKLIESVKIILKVSVVFTIAFIVLLQFVKELPKVELYS 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +         +  ++++    + +LD+     Q++  LKMSKQEIKDE KQ  G+P
Sbjct: 177 LAAQMVWLRDKALILAAIVIIAFLIIAILDVFLVRFQYFQGLKMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +     R +M++  + A ++ITNPTHYA+ALRY  T+ +AP +VAKG + +A
Sbjct: 237 QVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVALRYDTTKENAPRVVAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++++AY+HN+ ++E P LAR L+K   ++  IP   +KAV+++   +Y 
Sbjct: 297 LRIKEMAYKHNVIVYENPPLARQLYKDCDLDQLIPRELFKAVSEVFKFVYQ 347


>gi|238916767|ref|YP_002930284.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC
           27750]
 gi|238872127|gb|ACR71837.1| flagellar biosynthetic protein FlhB [Eubacterium eligens ATCC
           27750]
          Length = 372

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 173/355 (48%), Gaps = 5/355 (1%)

Query: 2   SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
           +++     KTE  +SKK++D   EG    S+E     S++   I +  +       +   
Sbjct: 14  AKDGPGGEKTEPATSKKLDDVRKEGQVAKSKELITAVSLMTLFIIIKIYVGNIGTKLIDS 73

Query: 62  LHVLLASATQRKLEDISHI-VFLLTHLSLSASRLVI----PGLLLFMMFGIGSYLIQRIP 116
              +     +   +    + V +   ++  A  +++    P L++ ++  I    +Q+  
Sbjct: 74  FKTIYGLMGKVIDDSSKGVTVNMAASIASQAFTIILNAVIPILIIAVIIAILGNALQQRW 133

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           ++    + P   +++   G KR++S+  L   +K+   + ++  ++   + +N   +L F
Sbjct: 134 MVTAKPLAPKASKINPLNGFKRLFSVRQLFELLKAIAMMSIIVIMVYNCVKKNMNILLTF 193

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
                ++ L      +  + I I      +  +D+ +  H++ +   M+KQE+KDE K +
Sbjct: 194 YDVTLYTALATVGNIIINLGIQISAVFLVVGFVDLLYQRHKFKNDNMMTKQEVKDEFKNA 253

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P +K + +   +   R +MM+    A ++ITNPTH+A+AL+Y   E  APV++AKG 
Sbjct: 254 EGDPQVKGQIRRKMQEISRRRMMQQLPEADVVITNPTHFAVALKYEPDEGKAPVVIAKGA 313

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + +A +++  A E+NI I E   LAR L+  V I + IPP  Y AVA+++  +  
Sbjct: 314 DYLAFQIKDRAKEYNIAIVENKPLARILYHNVDIGTEIPPELYYAVAEILASVLR 368


>gi|298528402|ref|ZP_07015806.1| type III secretion exporter [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512054|gb|EFI35956.1| type III secretion exporter [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 359

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/354 (28%), Positives = 182/354 (51%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M + D    KTE  + K+ + A  +GN P S+E     S++A ++ L  FF     +   
Sbjct: 1   MPQKDPS--KTEDATPKRRKKAREQGNVPKSQEMPKIISLIAGILALRLFFPHIRDTYME 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                +  A   +L +   +  L      + + +++P +L+     I +  +Q   +   
Sbjct: 59  MTEWFMDQAFHYQL-NPESLYHLAVFSIQNIASMLLPFMLIVFFVTIVAIYLQVGFLWTF 117

Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             +KP  K  ++ EG+K+ +  +N LV  +K+      V T   I +T  +   L     
Sbjct: 118 KPLKPKMKIFNVVEGLKKKFLDLNTLVRLVKNVGIASAVATAPYIIITSEFENFLPLFYE 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P  I+ +   T  K+ ++ ++ +  + + D+ ++   +   LKM+K E+KDE KQ+ GN
Sbjct: 178 DPPFIVAYILNTAFKMAMLAMIPLLIIAIADVAYTRWDYEQNLKMTKDEVKDERKQAEGN 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  Q+   +S  + +M +   +A ++ITNPTH A+A++Y      AP+++AKG N  
Sbjct: 238 PEVKKEQRKKMQSTTQQRMRQEVPKADVVITNPTHLAVAIKYDPVLAPAPMVLAKGANFR 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K+++IA E+NIPI E   LA++L+K V     IP   YKAVA ++ ++Y  K
Sbjct: 298 AEKIKEIARENNIPIRENKPLAQALYKNVQEGETIPEDMYKAVASILAQLYKFK 351


>gi|294013056|ref|YP_003546516.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S]
 gi|292676386|dbj|BAI97904.1| flagellar biosynthetic protein FlhB [Sphingobium japonicum UT26S]
          Length = 392

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 170/353 (48%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E++    KTE P++KK++DA  +G+   SR+ +    ++A + ++         S+  
Sbjct: 1   MAESNGGGEKTEKPTAKKLKDAAEKGDILQSRDLATALVVMAGIGWIAVTGP----SMVE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSL--SASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            L  +L  A + + EDI +        +L    +  V   +L  ++  I    +      
Sbjct: 57  SLSDMLIEALRFRREDIVNFAPADRGFALLSGIALPVAGIMLATLLAAIAGPAMLGSLGF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
                 P   +++   G+KR++ +  L+  +KS  K+ L+G I    +++    ++    
Sbjct: 117 RPGAFAPKASKLNPAAGLKRMFGMQGLIELVKSVAKVSLLGAIGVWMISDRLTEIVGLGK 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           +     +           +++   +  +  +D+     Q   +L MSKQEIKDE K+S G
Sbjct: 177 SGLAPAMADLGNMFIMTCLVMAGGLFLIAGIDVPAQLMQRSKRLSMSKQEIKDEHKESEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K   +      +     +A + A++IITNPTH+A+ALRY   ++ APV+VA+G + 
Sbjct: 237 SPELKGHIRRKQYEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVARGCDA 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           IA  +R++A ++ + + + P LAR+++        +    Y AVA ++  ++ 
Sbjct: 297 IAAAIRELADQNGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349


>gi|238752885|ref|ZP_04614350.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380]
 gi|238708924|gb|EEQ01177.1| Flagellar assembly protein [Yersinia rohdei ATCC 43380]
          Length = 377

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 177/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS   +   K+E P++ K+  A  +G+ P S++ ++ + ++A LI L  F       +  
Sbjct: 1   MS--ASTGEKSEKPTTGKLTKARKKGDIPRSKDVTMAAGLVASLITLTLFMPYYKELIKE 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +   A++  ++D + +  LL        + +I  L+   +  I + LI        
Sbjct: 59  SFLAVSRMASR--MDDPTALEQLLRINLFIFGKFLI-TLIPIPLASIVATLIPGGWNFTP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K++S   GIK+I+S +N    +K   K  +V   + I +  +   +L   +  
Sbjct: 116 VKLIPDLKKLSPIAGIKKIFSASNGTEVLKMLAKCSIVLYTLYIMVNNSLADLLRLQALP 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +   F     +L+  +  I    V+DI  S + +  K+KM+KQE+K E K + GNP
Sbjct: 176 LLEAITEGFSLYHGILVYFITIIVIFAVIDIPLSTYLFKKKMKMTKQEVKQEHKSNDGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + + R     ++ ++   A +IITNPTH+++AL+Y   +  AP +VAKG++ IA
Sbjct: 236 EIKARVRQLQRQFSMGQINKSVPNADVIITNPTHFSVALKYSPEKASAPYIVAKGKDDIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R +A ++NI I E P LAR+++    +N  +P   Y+A+AQ++  +   K
Sbjct: 296 LYIRSVAEKNNIEIVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVLTYVMQVK 348


>gi|170737009|ref|YP_001778269.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
 gi|169819197|gb|ACA93779.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
          Length = 379

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    D KTE  + +K+  A  EG    SR+      IL  L  ++      +  +  
Sbjct: 1   MSEQQTGD-KTEKATPQKLRKARMEGQVARSRDIGTCVGILVALKLIVVLTPAWLVELKH 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              +  A  +       + +  L     L   +++ P   +     I + LI    +++ 
Sbjct: 60  IFALSFADLSGDDRLG-NAVSMLFPAAVLLMCKMLAPLAAVPAGI-IVASLIPGGWIISH 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++ P   R++   G+KR+ S  + + F  + +K +++   + I    N    +    A 
Sbjct: 118 KNIMPKLNRLNPLSGLKRLVSGKHYMQFGTTVLKALVLMATLFIVCRSNLSGFIRLQGAP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L           + +   I    ++DI      +    +MSK++IK+E+KQS G P
Sbjct: 178 LADALTGGANLFLSSAVTLSCIITVFALVDIPVQQIIFKRGQRMSKRDIKEEMKQSEGRP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+R + I R   R  + +    A +++ NPTHYA+AL+Y  T   AP +VAKG + +A
Sbjct: 238 EVKSRIRQIQRQLARQGIRKTVPTADLVVMNPTHYAVALKYDVTRAQAPYVVAKGVDEVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R +A  HN+ + E P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 298 LFIRDVARGHNVEVLELPPLARAIYHTSQVNQQIPAELYRAVAQVLSYVLQIK 350


>gi|289678968|ref|ZP_06499858.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           syringae FF5]
          Length = 329

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 171/330 (51%), Gaps = 1/330 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN+   +KTE P+ KK++D+  +G    S+E +    +L     LL F S  I  + S
Sbjct: 1   MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L     + ++  L D S++   L    + A  +V+P L+  ++  +   ++    +   
Sbjct: 60  ELMRDNFTISRETLMDQSYMGKALLSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFAT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F R++   G+KR++S + LV  +KSF K ++   +  + L      ++      
Sbjct: 120 KSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEP 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H+   V      +   +  +   D+ +  ++ + KL M+KQE++DE K S G+P
Sbjct: 180 LEQAMIHSLVVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R   + +MM +   A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A
Sbjct: 240 EVKQRIRQLQREMSQRRMMASVPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            K+R+I   + I I E  +LARS++    +
Sbjct: 300 LKIREIGAHNEILILESAALARSIYYSTEL 329


>gi|330976011|gb|EGH76077.1| flagellar biosynthesis protein FlhB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 355

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 91/329 (27%), Positives = 167/329 (50%), Gaps = 1/329 (0%)

Query: 25  EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
           +G    S+E +    +L     LL F S  I  + S+L     + ++  L D S++   L
Sbjct: 2   DGQIARSKELTTLVVMLMGAGGLLMFGSD-IALMMSELMRDNFTISRETLMDQSYMGKAL 60

Query: 85  THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
               + A  +V+P L+  ++  +   ++    +     + P F R++   G+KR++S + 
Sbjct: 61  LSSGMHALVVVLPFLIAMLVAALVGPIMLGGWLFATKSLMPKFSRMNPAAGLKRMFSPHA 120

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           LV  +KSF K ++   +  + L      ++          + H+   V      +   + 
Sbjct: 121 LVELLKSFGKFLITLAVALVVLNNERKDLVAIAHEPLEQAMIHSLVVVGWSSFWMACGLI 180

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
            +   D+ +  ++ + KL M+KQE++DE K S G+P +K R + + R   + +MM +   
Sbjct: 181 FIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQRIRQLQREMSQRRMMASVPE 240

Query: 265 ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           A +IITNPTH+A+AL+Y   +  AP+L+AKG +L+A K+R+I   + I I E  +LARS+
Sbjct: 241 ADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIREIGAHNEILILESAALARSI 300

Query: 325 FKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +    ++  IP   Y AVAQ++  +Y  +
Sbjct: 301 YYSTELDQEIPAGLYLAVAQVLAYVYQIR 329


>gi|30524900|gb|AAP34345.1|AF499777_13 HrcU [Xanthomonas axonopodis pv. glycines]
          Length = 357

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +          + + + +  
Sbjct: 2   SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P 
Sbjct: 62  DFP--ENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I  
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKEMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341


>gi|322832554|ref|YP_004212581.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602]
 gi|321167755|gb|ADW73454.1| flagellar biosynthetic protein FlhB [Rahnella sp. Y9602]
          Length = 384

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++   K+EAP++ ++E A  EG  P SRE +    +   L  L          +  
Sbjct: 1   MAE-ESDLEKSEAPTAHRLEKAREEGQIPRSRELTSILMLGGGLTLLWMSGESMARQLGV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L       + D   ++  +  L   A   ++P +   ++  + + L+    + + 
Sbjct: 60  MISQGLK-FDHGMVSDDRQVLQQMATLLGRAVWALLPVIGGLILIALAAPLLLGGLMFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F R+    G+KR++S   L   +K+ +K +LVGT+  + L   +  M+  ++  
Sbjct: 119 KSFEFKFSRMDPIAGLKRLFSGQVLAELLKAVLKALLVGTVAGLYLWHKWPDMMRLMAQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A   V    +M++L +  +   D+ W       KL+MSKQ+I+DE K   G+P
Sbjct: 179 TIPALGEALNMVVFCGLMVVLGLTPMVGFDVFWQIWSNLKKLRMSKQDIRDEHKSQEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y + +  AP ++AKG   +A
Sbjct: 239 HVKGRIRQQQRAMARRRMMADVPKADVIVTNPTHYAVALQYSENKMSAPKVLAKGAGDVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++  EH IP+ E P LAR+L++   I   IP   Y AVA+++  +Y  K
Sbjct: 299 LRIRELGVEHKIPMLEAPPLARALYRHSDIGQQIPATLYAAVAEVLAWVYQLK 351


>gi|312884814|ref|ZP_07744506.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367466|gb|EFP95026.1| flagellar biosynthetic protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 375

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+ + D KTE  S++KI+ A +EG  P +++ +     LA LIY     S     +  
Sbjct: 1   MSESTSQD-KTEQASAQKIKKARSEGQIPRAKDFTAACIFLAVLIYFSSQMSLIWEKIAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                +   T++ L D    +    +       L IP  ++ +   + S LI    +   
Sbjct: 60  TFEYNMR-LTKQDLADPYQTIEHFGNSLGILIELFIPMFIVILSIAMASSLILGGWLFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++ P   ++   +GIKRI S+ ++V  +KS +K+ ++ TI+ + L  +   +L      
Sbjct: 119 ANLMPKMSKLDPIKGIKRIVSLRSVVELVKSALKVTVIFTILYLYLNNHLQPLLGMQRLG 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                      +   LI++ + +    ++DI +   +   +LKM+KQE+K+E K + G P
Sbjct: 179 IEQGSIQIMNILFDGLILMGIALLVFGLIDIPYQRWEHLKELKMTKQELKEEYKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTHYA+A++Y  + +DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFSRRKVDKMVPTADVVITNPTHYAVAIKYDPSISDAPFVVAKGIDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             ++++A ++ + I   P L RS++    I  AIP   Y AVA ++  +   +
Sbjct: 299 MHIQRVARDNQVEIIHSPPLTRSIYHTTAIEQAIPSQLYIAVAHILTYVMQIQ 351


>gi|154249642|ref|YP_001410467.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153578|gb|ABS60810.1| flagellar biosynthetic protein FlhB [Fervidobacterium nodosum
           Rt17-B1]
          Length = 384

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 178/348 (51%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A  +KTE  + +K + A  EG  PISRE       L   +  +      I ++ +    +
Sbjct: 33  ADPDKTEKATPRKRQKAREEGQVPISRELVSGLGFLFASMVFILLGKRLIDALITSTQSV 92

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
               +   +  +   +   +     A  +V   +L   +F +   L+Q   +     +K 
Sbjct: 93  FE-ISDNDIRTLEDFIIYASQTFRPAFLVVAILVLGTALFSLIIGLLQTRFLFTFKPLKM 151

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++   G+KR++S+ +L   +K+ +K+ ++G +    +  N+  +L  + ++     
Sbjct: 152 DLNRLNPITGLKRMFSLRSLFELLKAILKLAIIGFVGYSVIKGNFDKVLLTVDSSLIDGT 211

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              +  + +++I   + +  +++ D  +S +++   +KM+KQEIK+E K+  GNP IK R
Sbjct: 212 LIMWGVLSELIIKCGIALIVVSIADYYYSRYEYEQNIKMTKQEIKEEFKEIEGNPEIKRR 271

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+ I      H+MM+   +A+++ITNPTH+A AL+Y   E+ AP LVAKG + +A ++  
Sbjct: 272 QRQIMMQFAMHRMMQEVPKASVVITNPTHFACALKYDPEEDFAPKLVAKGVDKVALRIID 331

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA ++++PI   P LAR ++    +   IP   YKAVA+++  +Y  +
Sbjct: 332 IARKNDVPIVRNPRLAREIYYSTELGDIIPEKLYKAVAEVLAYVYTLR 379


>gi|327478779|gb|AEA82089.1| flagellar biosynthesis protein FlhB [Pseudomonas stutzeri DSM 4166]
          Length = 380

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S +K++ + ++G    S++ +   S+LA L+ L       +  +  
Sbjct: 1   MSEQNSSQEKTEEASEQKLKKSRDDGQVTRSKDVATTVSLLATLLLLKLSAELFLDGMQQ 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                  +  Q ++      V L  +L +  S L+   L   ++      L+    V   
Sbjct: 61  SFSYSYINFQQSEIGIDDLQVILTHNLLVFISVLLPLLLTPILVIAFA--LVPGGWVFAS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +  P F +++   G+ R+    N     KS +KI  +  I    L      ++     +
Sbjct: 119 KNFAPKFSKLNPITGLGRMVGAQNWSELAKSLLKISALLGIAAWQLYYAAPRLVALQRTD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +  AF     + I +LL     + +DI      +  K++M+KQE K+E K   G P
Sbjct: 179 IFNAIGGAFSLTFDLAISLLLVFVLFSFIDIPLQRFFFLKKMRMTKQERKEEHKNQEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R K + R+  + ++ +    A ++I NPTHYA+ALRY   + + P ++A+G + +A
Sbjct: 239 EVKARIKQLQRALAQRQIAKVIKDADVVIVNPTHYAVALRYDPKKAETPFVIARGVDEMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +RK+A  +   + E P LAR+++    +N  IP   Y AVA ++  I   K
Sbjct: 299 LYIRKMAQANGREVVELPPLARAIYYSTQVNQQIPAPLYTAVAHVLTYILQLK 351


>gi|51597656|ref|YP_071847.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP
           32953]
 gi|170022952|ref|YP_001719457.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186896790|ref|YP_001873902.1| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590938|emb|CAH22594.1| Putative flagellar assembly/export protein, flhB [Yersinia
           pseudotuberculosis IP 32953]
 gi|169749486|gb|ACA67004.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           YPIII]
 gi|186699816|gb|ACC90445.1| flagellar biosynthetic protein FlhB [Yersinia pseudotuberculosis
           PB1/+]
          Length = 377

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/340 (28%), Positives = 172/340 (50%), Gaps = 3/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P++ K+  A  +G+ P S++ ++ + ++   I L  F  P   ++ S   V +A    + 
Sbjct: 12  PTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKALVSQSFVSVAQLASQL 70

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
            +  +   FLL +L + A  L    L+   +F + + LI          + P  K++S  
Sbjct: 71  DDQGALEQFLLANLFIFAKFLA--TLIPIPLFSMLATLIPGGWNFTPVKLIPDLKKLSPL 128

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            GIKRI+S +N    +K   K  +V   + + +  +   +L   +      +   F    
Sbjct: 129 AGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEEAITQGFAQYH 188

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            +L+  +  +     +DI  S+H +  K+KM+KQE+K E K + GNP IK+R + + R  
Sbjct: 189 HILLYFIAIVVVFAAIDIPLSHHLFTKKMKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQY 248

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
              ++ +    A +IITNPTH+++AL+Y   +  AP +VAKG++ IA  +R IA +H I 
Sbjct: 249 AIGQINKTVPSADVIITNPTHFSVALKYAPEKASAPYIVAKGKDDIALYIRSIAQKHKIE 308

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I E P LAR+++    +N  IP   Y+A+AQ++  +   K
Sbjct: 309 IVEFPPLARAIYHTTKVNQQIPAQLYRAIAQVLTYVMQIK 348


>gi|152990384|ref|YP_001356106.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2]
 gi|151422245|dbj|BAF69749.1| flagellar biosynthetic protein FlhB [Nitratiruptor sp. SB155-2]
          Length = 351

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 175/353 (49%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ +   KTE  + ++ E A  EG    S++  + ++++   +  L +       +  
Sbjct: 1   MAKDPS---KTEKATPRRREKAREEGQVAKSQDIPISATLIVVFMLFLAYIPFAYKKLYE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               + A       +    I++L+         L IP  L  ++ G+ S + Q   +L  
Sbjct: 58  LFMFIFADPLYNIPQYNYSIIYLVMEF---MGYLTIPFFLALLITGVVSNIAQIGFLLTF 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +++    G+KR++S+  L   +K+ +K+I    +    +      +  + +  
Sbjct: 115 KSMVPKLEKIDPIAGLKRLFSLKTLFELVKNILKLIAATIVSYFLVQFLLRDVFQYATTT 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P+            +++   +    +  +D  +   ++   +KMSK E+K+E KQ  GNP
Sbjct: 175 PYKDAVLLVKYTLIMILGFAILSIPIAAIDFFFRKFEFEENIKMSKHEVKEEHKQMEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+  +   R    +++M    +A ++ITNP H+A+AL+Y + +  AP +VAKG++ +A
Sbjct: 235 QVKSEIRKRMREMSMNRIMAEVPKADVVITNPVHFAVALKYEKEKMHAPKVVAKGKDYLA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA EH +PI E P LAR++++   ++  IP   YKA+A++  K++ ++
Sbjct: 295 LKIKEIAKEHGVPIEENPPLARAIYQACDVDEYIPENLYKAIAKIFAKVFKRQ 347


>gi|319409199|emb|CBI82843.1| Flagellar biosynthetic protein flhB [Bartonella schoenbuchensis R1]
          Length = 356

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 204/355 (57%), Gaps = 1/355 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS E    ++KTE P+  KI     +GN P SRE  +FSS+L+  +  +F   P I  ++
Sbjct: 1   MSDEKPDKESKTEEPTEHKIHKEEEKGNLPFSRELPIFSSLLSFSVISIFIAFPAISQLS 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L   L      ++     +  L+  +  +    + P L++  + GI +  IQ +P + 
Sbjct: 61  HFLLQWLERPESWRINTAEDVKHLIYLVGGNVGLALAPILIIIPLIGISASAIQHVPRII 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +  ++P + RVSL  G +RI+S   LV F+KS  K+I V  I+ I   +N    ++ +  
Sbjct: 121 MERIRPQWSRVSLSNGFERIFSKAGLVEFLKSLTKLIGVSIIVYIMFFKNNTIFINALLT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  ++  +    +  + +  ++ +A +   D+ WS   W  KL+MSKQEIK+E K   GN
Sbjct: 181 DAPALPEYIREKLVGLSLSFIVAVAAIAGFDLAWSRFHWRQKLRMSKQEIKEEHKSLEGN 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK R +S+A  R+R +M+     AT+I+ NPTH+++ALRY    + APV+VAKGQ+++
Sbjct: 241 PMIKARMRSLAHDRMRLRMISNVPTATLIVANPTHFSVALRYKPPLDYAPVVVAKGQDIL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           A ++R+IA E++IP+ E   LAR+L+KQV ++  IPP  Y++VA LI  I  +KI
Sbjct: 301 ALQIREIAVENDIPVIENVELARTLYKQVEVDQVIPPELYESVAALIRFINSQKI 355


>gi|5679184|gb|AAD46898.1|AF160974_1 HrcU homolog [Xanthomonas campestris pv. glycines]
          Length = 357

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +          + + + +  
Sbjct: 2   SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L+  ++ G+     Q     +L  V P 
Sbjct: 62  DFP--ENTRDATAINRALGHIGIQGLLLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++   +      ++      P  I  
Sbjct: 120 FDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E+K+S G+P IK ++
Sbjct: 180 IAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y   +   P +VAKG +  A ++R  
Sbjct: 240 KEFAKDMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAF 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L+ QV +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALY-QVELGDAVPEPLFETVAVVLRWV 341


>gi|319944146|ref|ZP_08018424.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC
           51599]
 gi|319742640|gb|EFV95049.1| flagellar biosynthetic protein FlhB [Lautropia mirabilis ATCC
           51599]
          Length = 384

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 169/353 (47%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  + +++    S +++  A  EGN P SR+ +    + A +  L          +  
Sbjct: 1   MAE-TSKEDRQLPASEQRLRKAREEGNVPRSRDVAHLLVMGAGMGALALMGPSLADGMRR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +    A   Q +L  +  +   L H         +  LL      I +  I     L++
Sbjct: 60  LMASTFAFDGQVRLYFLDALQPALAHFG-DLGWRTLAILLSVCAAAIAASTIPGGFNLSV 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +     R+S   G+KRI+S+ NLV F+K  +   L+G I +    + +         +
Sbjct: 119 KALGVKISRISPASGLKRIFSLRNLVEFLKLSLLASLLGAIGSWYAMDRFPEFAALSHGS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + HA   V   L + +L +  L + D+ + + +  + L+M++ E K E ++S G+P
Sbjct: 179 LAGSVSHAMALVVGGLGLSMLLLFALALFDVPFQWFRHRADLRMTRDEAKREHRESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +S  R   R +M+ A   A I++ NPTHYA+A+RY +    AP +VAKG + +A
Sbjct: 239 QLKGQIRSRQREAARRRMLSAVPSADIVVVNPTHYAVAIRYDEAAGGAPRVVAKGLDELA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA E  +P+   P LAR+L+  V ++  IP   Y AVAQ++  +Y  K
Sbjct: 299 MRIQAIARESGVPVLSAPPLARALYAHVELDQEIPQALYVAVAQVLVYVYQLK 351


>gi|157164760|ref|YP_001466322.1| flagellar biosynthesis protein FlhB [Campylobacter concisus 13826]
 gi|112800831|gb|EAT98175.1| flagellar biosynthetic protein FlhB [Campylobacter concisus 13826]
          Length = 357

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 189/350 (54%), Gaps = 4/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D    KTE  + KKIEDA  +GN P S++ S F +++  +  LL   +     V S
Sbjct: 1   MAGED--QEKTEEATPKKIEDAKKDGNVPKSQDLSGFVTLVIAIGVLLAMLNFMKDQVIS 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L++  +    + L  +  +  ++ +    A  +++P  +   + GI + ++Q   +   
Sbjct: 59  -LYIYYSKFIGQPL-TLPTVKMIVVNTFGRALLMILPVCICVAVAGIIANVMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F +++  +G+K ++S+   +  +K  VK+ +V  +      +    +   +  +
Sbjct: 117 KPITPNFGKINPLKGLKNLFSMKKAIESVKIVVKVSIVFGVGFYFFLQFIKELPHTLFFS 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +  ++ ++L  +  + + D+     Q++  L+MSKQEIKDE KQ  G+P
Sbjct: 177 MFDQLAWLKEKLIILVSVMLFILFVIGLADLLIVRFQYFKDLRMSKQEIKDEYKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +       + +MM+   +A ++ITNPTHYA+A+RY ++ ++AP+++AKG + +A
Sbjct: 237 QVKGRIRQAQMRAAKRRMMQNIPQADVVITNPTHYAVAIRYDKSRDEAPIILAKGVDFLA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +++K+A E+ + I+E P LAR L++   ++  IP   ++AVA+++  +Y
Sbjct: 297 LQIKKVAVENGVQIYENPPLARELYRVCEVDDTIPAHLFRAVAEVLSFVY 346


>gi|315186370|gb|EFU20130.1| flagellar biosynthetic protein FlhB [Spirochaeta thermophila DSM
           6578]
          Length = 387

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 166/348 (47%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+  KI  A  EG    + E      +L  LI L    S    ++ S     
Sbjct: 32  EDEGRTEEPTEHKIRKAREEGKVAKTPELPSTLVMLFTLITLALLSSYLFSTMVSMFQTF 91

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +S +  +    +H             +L +P  ++ +  G+   ++Q   +  +  + P
Sbjct: 92  FSSISSPE---PTHTGRFFVLFLQFFLKLTLPFFVVALFAGVAGNVLQVGFLFTVKPITP 148

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
             +R+  +     KR ++S   L N  K+ +K+  +G +  +++      +++ +     
Sbjct: 149 DLQRIVPNFSRFAKRVLFSTEALFNLGKTILKVAAIGFLAYLNIRMELPRLVNLLRVPLL 208

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
             +      V ++L    +    ++++D  +   Q    LKMS++E+K+E K   G+P++
Sbjct: 209 QGIRFLGALVFRILFEATVVFLAISIVDYLFQRRQHLESLKMSREELKEERKMYEGDPLV 268

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R +   R  +   M+     A ++ITNPTHYA+AL Y +   +AP +VAKG + +A +
Sbjct: 269 KSRLRQRMREILTRNMIRRVPEADVVITNPTHYAVALEYERARMEAPTVVAKGADELALR 328

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           MR IA EH +P+ E   LAR+L++ V +   IP  +Y  VA ++ K+Y
Sbjct: 329 MRAIAREHGVPLVENRPLARALYQDVEVGDTIPEQYYAVVATILAKVY 376


>gi|126730129|ref|ZP_01745941.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37]
 gi|126709509|gb|EBA08563.1| flagellar biosynthetic protein FlhB [Sagittula stellata E-37]
          Length = 363

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 164/349 (46%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    K+  PS +K++ A  +G  P S +     S L  L+         +     
Sbjct: 1   MADQDEAAEKSHEPSQRKLDQARKKGEIPRSTDLLTAMSYLGMLVCGTAAGGYMLSQFAE 60

Query: 61  DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            +  LL    +  K     +   L   + ++A   V+P LL+  +F + +    R     
Sbjct: 61  VMLPLLEQPDRIAKGFFGGNAAPLAGSVMVAAISPVLPLLLVPGVFVLLTLFATRGFTFA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P   R++  EG K  +    L  F KSFVK+ +   ++ + L     +++  +  
Sbjct: 121 GTKLQPKVSRINPIEGAKNKFGRRGLFEFFKSFVKLTIYSALLAVFLQHQLDSIVGTVFG 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P   +      + + L++++L    +  +D  W   +   K +MS++E++DE+K S G+
Sbjct: 181 TPAEAILLMTDLILRFLLVVVLIAVVIGGIDAFWQRMEHIRKNRMSQKELRDEMKDSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK  ++  A+    ++M+     A ++I NPTHYA+AL++ +    APV VAKG + +
Sbjct: 241 PHIKQHRRMRAQEMALNQMLPDVPDADVVIVNPTHYAIALKWSRMPGSAPVCVAKGTDHV 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A ++R++A +  +PI  +P  AR+LF    I   I    Y+ VA  I  
Sbjct: 301 AARIREVATDAGVPIHSDPPTARALFATTRIGDEIATEHYRPVAAAIRF 349


>gi|253702491|ref|YP_003023680.1| flagellar biosynthesis protein FlhB [Geobacter sp. M21]
 gi|251777341|gb|ACT19922.1| flagellar biosynthetic protein FlhB [Geobacter sp. M21]
          Length = 353

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 185/353 (52%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D   +KTE P+SKKIE+A N+   P SRE +   S++  ++ L       + ++ +
Sbjct: 1   MADED-KHSKTEKPTSKKIEEARNKSGVPRSREMTSAVSLITAMVTLYASSGLFLKTMKT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  +     + +L   +    ++      A  ++ P +L+ ++ GI   + Q    ++ 
Sbjct: 60  SMQEIFGGLARPELTFAAVHTLMIKEFGYLAI-MLAPFILVGIVAGIAVEVTQGGLTVSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K    R++  +G+ R+++ +++    KSF+K+ +VG +    LTE    ++  +  +
Sbjct: 119 EKMKWDLGRLNPIQGVGRLFNKDSVFEVAKSFLKMAIVGYMAYKILTEEMDGIIYLVDQD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I+        K+++     +  L VLD+ +   ++   LKM+KQE+KDE K   G+P
Sbjct: 179 LMGIMQFIGHISFKLVLHTCGVLIVLAVLDLAFVKWRFIENLKMTKQEVKDEHKNMEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K +QK       R +M +    A +++TNPTHYA+AL+Y + +  APV++ KG + +A
Sbjct: 239 AVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAIALKYDRLQMAAPVVLFKGVDQMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++  A EHN+ + E   LAR L+ QV     IP   + AVA+++  +Y  K
Sbjct: 299 LQIKITAREHNVTLVENRFLARELYAQVEEGDQIPEALFAAVAEILAYVYSLK 351


>gi|121596106|ref|YP_988002.1| type III secretion exporter [Acidovorax sp. JS42]
 gi|120608186|gb|ABM43926.1| type III secretion exporter [Acidovorax sp. JS42]
          Length = 390

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 1/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
            +  +K    + +K++ A ++G A  SR+ S  + +    + LL      +  +   +  
Sbjct: 2   SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQ 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            LA      ++   H++  L  ++            L     + S +     V +   + 
Sbjct: 62  QLA-FNAATVQAPGHMLERLQTMAGVGLLASASFAALTGGAALLSAVGAGGWVFSFKPIT 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++   G   ++S   L N  K  +   ++  +    + ++   M   +       
Sbjct: 121 PQFNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSIEKMAALVLQPSPMS 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L H    +     ++LL +    V+D+      + S+LKMS +E+K E K+S GNP +K 
Sbjct: 181 LRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           RQ+  AR       + A  +A  ++ NPTHYA+AL+Y      AP +V+KG +L+A K+R
Sbjct: 241 RQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLLAFKIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++A  H +P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 301 EVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349


>gi|222112261|ref|YP_002554525.1| type III secretion exporter [Acidovorax ebreus TPSY]
 gi|221731705|gb|ACM34525.1| type III secretion exporter [Acidovorax ebreus TPSY]
          Length = 390

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 1/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
            +  +K    + +K++ A ++G A  SR+ S  + +    + LL      +  +   +  
Sbjct: 2   SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGMGALALLVLAPWFVEYLQRAMRQ 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            LA      ++   H++  L  ++            L     + S +     V +   + 
Sbjct: 62  QLA-FNAATVQAPGHMLERLQTMAGVGLLASASFAALTGGAALLSAVGAGGWVFSFKPIT 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++   G   ++S   L N  K  +   ++  +    + ++   M   +       
Sbjct: 121 PQFNRLNPLTGFTNLFSKQQLANVSKMVLMTGILSFVAWNFMGQSIEKMAALVLQPSPLS 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L H    +     ++LL +    V+D+      + S+LKMS +E+K E K+S GNP +K 
Sbjct: 181 LRHVGDWIVSGTSLLLLVVFLFAVVDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           RQ+  AR       + A  +A  ++ NPTHYA+AL+Y      AP +V+KG +L+A K+R
Sbjct: 241 RQRQRAREIADGASITAVPKADFVVMNPTHYAVALKYDDATMGAPQVVSKGTDLLAFKIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++A  H +P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 301 EVAQAHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349


>gi|254459117|ref|ZP_05072540.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD
           1]
 gi|207084388|gb|EDZ61677.1| flagellar biosynthetic protein FlhB [Campylobacterales bacterium GD
           1]
          Length = 349

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 106/352 (30%), Positives = 177/352 (50%), Gaps = 6/352 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ KKIEDA  EGN P S++ S   ++   ++  L  F P + +   
Sbjct: 1   MADD---AEKTEEPTPKKIEDARKEGNVPKSQDTSGVITLFVAILATLMLF-PYMSNHML 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     S     L+ +  I   +  +      +++P  +   + G+ + L Q   +   
Sbjct: 57  LLFKYYFSLIGTPLDKLFMIDIAIVTI-KEFLLIIMPLAIAVAISGVIAALAQFGFLFTT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P FK++   +G K ++S+  L+  +K   K      I  +        +      +
Sbjct: 116 KAIMPDFKKIDPIKGTKNLFSMKKLIESVKITFKSFTTLGIGFVFFFLYILELPTVALFS 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         +  ++LL I    ++DI     Q++  LKMSKQEIKDE+K   G+P
Sbjct: 176 LGEQLVWLKDKAIILAFVMLLIIFVFAMIDIVIVRKQYFDGLKMSKQEIKDEMKNMEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK + + I     R +MM     A +IITNPTHYA+AL+Y +++  AP +VAKG + IA
Sbjct: 236 LIKGKIRQIQMQASRKRMMAEVPNADVIITNPTHYAVALKYEESK-RAPYVVAKGMDNIA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           ++++KIA E+N+ I + P LARSL+  V I+  IP   + AVA+++  +Y  
Sbjct: 295 QQIKKIARENNVHIVQNPPLARSLYADVEIDKPIPEELFAAVAEVLAYVYKM 346


>gi|323493113|ref|ZP_08098244.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546]
 gi|323312584|gb|EGA65717.1| flagellar biosynthetic protein [Vibrio brasiliensis LMG 20546]
          Length = 375

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 179/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +  +KTE  S++KI+ A +EG  P ++E +     +A  +Y     S  I++  +
Sbjct: 1   MSEQ-SSQDKTEQASAQKIKKARDEGQIPRAKEFTTAVIFVAVAVYFYSQISA-IWNSIA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S  ++ L +   ++  L H      +L++P  ++ ++  + S LI    +   
Sbjct: 59  GIFRYNMSLNKQDLANPLQMIEQLGHSLGVVIQLLLPLFVVIIVVAVASSLILGGWMFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +V P   +++   GIKR++S  + V  +KS  K+ ++  ++   L  +   +L     +
Sbjct: 119 ANVMPKLSKLNPLSGIKRMFSSRSFVELLKSTFKVAVIFALLYAYLNNHLQPLLGMQMLS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   L+++   +    V+DI +   +   +L+M+KQEIK+E K + G P
Sbjct: 179 LEQGVVKVMMILFDGLLLMGFALLLFGVIDIPYQRWEHLKELRMTKQEIKEEYKNNEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I +   R K+ +    A ++ITNPTHYA+A++Y   ++DAP +VAKG +  A
Sbjct: 239 EVKQRIRQIQQQFARRKIEKMVPTADVVITNPTHYAVAVKYDPAQSDAPFVVAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +++IA E+ + I   P L RS++    I  A+P   Y AVA ++  +   K
Sbjct: 299 MHIQRIARENQVEIVNSPPLTRSIYHTTAIEQAVPSQLYIAVAHILTYVMQLK 351


>gi|120613048|ref|YP_972726.1| type III secretion exporter [Acidovorax citrulli AAC00-1]
 gi|120591512|gb|ABM34952.1| type III secretion exporter [Acidovorax citrulli AAC00-1]
          Length = 390

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 161/350 (46%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + +  +K    + +K++ A  EG A  SR+ S  + +    + +       I  +   + 
Sbjct: 2   DSSSQDKQLPATERKLQKAREEGQAARSRDLSHIAILGMGAVSIYALAPSLIEHLQQAIA 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L S     +     ++  L  ++           LL  +  + S +     +     V
Sbjct: 62  HHL-SFNAETVHATGSMLQRLQDMTFVGLAASFAFALLTTVATVASAIGSGGWIFTFKPV 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P+F R++   G   ++S   +V  +K  +   ++  +    ++ +   +   +      
Sbjct: 121 MPNFTRLNPISGFANLFSKQQMVTVLKMVLMTGILAAVAWSFMSTSIEKIAMLVLQPSPV 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L +    +   + ++LL +    ++D+      + S+ KMS +E+K E KQS G+P +K
Sbjct: 181 ALRYVAEWITGGMALLLLVVFLAAIIDVPLQAFFFKSRQKMSHEEVKQEHKQSEGSPEVK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            RQ+  AR       +    +A  ++ NPTHYA+ALRY +    AP +V+KG +L+A K+
Sbjct: 241 GRQRQRARDIASRASLANVPKADFVVMNPTHYAVALRYDEATMGAPQVVSKGTDLLAFKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A +H++P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 301 RELANQHSVPVLQSPMLARALYANAELEQPIPAQLYAAVAQILAYVYRLK 350


>gi|83589641|ref|YP_429650.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC
           39073]
 gi|83572555|gb|ABC19107.1| flagellar biosynthetic protein FlhB [Moorella thermoacetica ATCC
           39073]
          Length = 374

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 184/346 (53%), Gaps = 2/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           + KTE  +  ++++   +G    S + S    +LAC+++L +       ++   +   L 
Sbjct: 28  EEKTEEATPHRLQEVRQKGQVARSNDLSTAMVLLACVVFLYWRRETFYQAMADLITSTLQ 87

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
               ++L D   ++ L + L+L    L+ P L L    G+ +   Q   V +L  + P  
Sbjct: 88  DGWHQQL-DGGSLMALGSQLALKVGLLLAPLLALAAAVGLAANFAQTGFVFSLEPLLPRL 146

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           + +   +G++R +S   L+  +KS  K+++V  ++   +   +  +L  +     + L  
Sbjct: 147 ENLDPVKGMQRFFSRRALMELLKSLAKVVVVSLVVWQLVKGQFTQLLLTVDMGLPATLDL 206

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V +V +  +     L   D  +   ++   L+M++QE+K+E+KQ  G+P++++R +
Sbjct: 207 VSRMVYRVGLGTVAVFLALAAADYVFQRREYQKNLRMTRQEVKEEMKQMEGDPLVRSRLR 266

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R   RH+MM A   AT++ITNPTH A+ALRY + E  AP +VAKG   IA++++ +A
Sbjct: 267 EKQRQLARHRMMHAVPEATVVITNPTHVAVALRY-REEERAPRVVAKGAGSIAERIKAVA 325

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             HN+P+ E P +AR+L++QV +   IP   Y+AVA+++ +IY  +
Sbjct: 326 RRHNVPVVENPPVARALYRQVELGQEIPVALYQAVAEILARIYKLR 371


>gi|332297777|ref|YP_004439699.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM
           12168]
 gi|332180880|gb|AEE16568.1| flagellar biosynthetic protein FlhB [Treponema brennaborense DSM
           12168]
          Length = 378

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 170/352 (48%), Gaps = 8/352 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE PS  K+  A  EG  P S+E S    +L  ++ L+             L   
Sbjct: 29  EDEGRTEQPSETKLRKAREEGRIPKSQELSGALVLLFPVLALIMLAPWLFTGFIKILRFY 88

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124
                  +L D +      +    +  R+V+P  L  ++ GI + +IQ    +     ++
Sbjct: 89  FDRCVSVELNDPALAAEFFS----AVIRMVLPVSLTALVAGIAANVIQNRGFLFTTKPIE 144

Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P F ++    G    K ++S     N +KS +K+ ++     I +  +   +L  +  + 
Sbjct: 145 PKFSKILPHFGEYFKKTLFSFEGAFNIVKSLLKVTVIFAAAYILVKNDLPKLLSLMDVSL 204

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + + +      K+L++  +    + + D      Q+   +KMSKQE+K+E K+  G+P+
Sbjct: 205 WTGVAYIAGMTAKLLVIAAVIFIVIAIPDYLVQRRQFMESMKMSKQEVKEEFKEMEGDPL 264

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K+R +      +   M    +++ ++ITNPTHYA+A+ Y  +    P++ AKG + +A+
Sbjct: 265 VKSRIRQYMHQMLSQNMPANVAKSDVVITNPTHYAVAIEYDSSVMQGPMVTAKGVDSLAR 324

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++ IA E+ +PI E   LAR+L+ +  I   +P  +Y+A+A ++  +Y+ K
Sbjct: 325 RIKDIARENAVPIVENRPLARALYAEAEIGEIVPENYYQALAVILANVYNMK 376


>gi|326319086|ref|YP_004236758.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323375922|gb|ADX48191.1| type III secretion exporter [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 390

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 162/350 (46%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           + +  +K    + +K++ A  EG A  SR+ S  + +    +         I  +   + 
Sbjct: 2   DSSSQDKQLPATERKLQQAREEGQAARSRDLSHLAVLGMGAVSTYALAPSLIEHLQRAIA 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L S     +     ++  L  ++           +L  +  + S +     +     V
Sbjct: 62  HHL-SFNAETVLATGSMLQRLQDMAFVGVAASFAFAVLTTVAAVASAIGSGGWLFTFKPV 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P+F R++   G   ++S  ++V  +K  +   ++  +    ++ +   +   +      
Sbjct: 121 MPNFSRINPLSGFSNLFSKQHMVTVLKMVLMTGILAAVAWSFMSTSIEKIAMLVLQPSPV 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L +    +   + ++LL +    ++D+      + S+ KMS +E+K E KQS G+P +K
Sbjct: 181 ALRYVAEWITGGMALLLLVVFLAALIDVPLQAFFFKSRQKMSHEEVKQEHKQSEGSPEVK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            RQ+  AR       +   ++A  ++ NPTHYA+ALRY +    AP +V+KG +L+A K+
Sbjct: 241 GRQRQRAREIANRASLGNVAKADFVVMNPTHYAVALRYDEATMGAPQVVSKGTDLLAFKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A +H++P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 301 RELANQHSVPVLQSPMLARALYANAELEQPIPSQLYAAVAQILAYVYRLK 350


>gi|264676579|ref|YP_003276485.1| type III secretion exporter [Comamonas testosteroni CNB-2]
 gi|262207091|gb|ACY31189.1| type III secretion exporter [Comamonas testosteroni CNB-2]
          Length = 393

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE     +K    + +K++    +G    SR+ S  + +    + +L    P I  +  
Sbjct: 1   MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLMLMGTQPMINHLRE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L        +  + ++     + +    + +   L+     + S +     + + 
Sbjct: 58  AMARQLV-FNAAAAKTPALMLERFQSMLVLGLGIAVIFALVTTTASVLSGVAAGGWIFSF 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S   L   +K     I++G +    ++ N   +    +  
Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLGFVAWKYMSANIAEIASVSAQP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   + ++L+ +  + ++D+      + S+LKMS +E+K E K+S GNP
Sbjct: 177 SPMALTMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMSHEEVKQEHKESEGNP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +   R       + A  +A  ++TNPTHYA+ALRY      AP ++AKG +L+A
Sbjct: 237 QLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDASMAAPQVIAKGTDLVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H IP+ E P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349


>gi|89072287|ref|ZP_01158866.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
 gi|89051819|gb|EAR57271.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
          Length = 375

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ + D KTE  + +KI  A  +G  P +++ +  +  +A +++  F     I+   +
Sbjct: 1   MSQSTSQD-KTEKATPQKIRKAREQGQIPRAKDFTAATIFIAVIVFFYFQI-DVIWQALN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L  + ++  L      +  L        +L++P   L ++  I S L+    +   
Sbjct: 59  GVFKLNMTMSRDDLRSPWLAIEALGTSLAIIIQLLLPLFGLILITAIASSLLIGGWLFYP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++    GIKR++S  +LV  +KS +K+ ++  ++ + L  N   +L   +  
Sbjct: 119 AGILPKLSKIDPIAGIKRMFSTRSLVELLKSTLKVCVIFLLLYLYLDTNLSRLLGMQNLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +   ++++ + +    ++DI +   +   +LKM+KQE+K+E K + GNP
Sbjct: 179 LKQGVSLIMTILFHGILLMGIALFLFGLIDIPYQKWEHAKELKMTKQELKEEFKTNEGNP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + I +   R ++ +A  +A ++I NPTHYA+A++Y  T ++A  +VAKG +  A
Sbjct: 239 EIKQRIRQIQQQFARRQIDKAVPKADVVIVNPTHYAVAIKYDTTLSEALFVVAKGIDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             ++ IA +H++ I   P L R+++    I  AIP   Y AVA ++  +   K
Sbjct: 299 MHIQTIAKQHDVEILHSPPLTRAIYHSTQIEQAIPSQLYVAVAHILTYVLQLK 351


>gi|299531277|ref|ZP_07044687.1| type III secretion exporter [Comamonas testosteroni S44]
 gi|298720684|gb|EFI61631.1| type III secretion exporter [Comamonas testosteroni S44]
          Length = 393

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE     +K    + +K++    +G    SR+ S  + +    + +L    P I  +  
Sbjct: 1   MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLMLMGTQPMINHLRE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L        +  + ++     + +    + +   L+     + S +     + + 
Sbjct: 58  AMARQLV-FNAAAAKTPALMLERFQSMLVLGLGIAVIFALVTTTASVLSGVAAGGWIFSF 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S   L   +K     I++G +    ++ N   +    +  
Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFMTIVLGFVAWKYMSANIAEIASVSAQP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   + ++L+ +  + ++D+      + S+LKMS +E+K E K+S GNP
Sbjct: 177 SPMALAMVGSWLTTGITLLLIVVLLVALIDVPLQDFLFKSRLKMSHEEVKQEHKESEGNP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +   R       + A  +A  ++TNPTHYA+ALRY      AP ++AKG +L+A
Sbjct: 237 QLKGKIRQKQREIADRASVSAVPKADFVVTNPTHYAVALRYDDASMAAPQVIAKGTDLVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H IP+ E P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349


>gi|325921925|ref|ZP_08183736.1| HrcU protein [Xanthomonas gardneri ATCC 19865]
 gi|325547627|gb|EGD18670.1| HrcU protein [Xanthomonas gardneri ATCC 19865]
          Length = 357

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 164/343 (47%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++DA  +G  PIS + +  + +LA L+ +    S  +  + + + +  
Sbjct: 2   SDEKTEKPTEKKLQDARRDGEVPISPDVTAAAVLLAALLVMKLAGSYFVEHLRALMSIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              T  +  D + +   L  + + A  L +P +   +  G+    +Q     +L  V P 
Sbjct: 62  DFTTNTR--DATALQRALGRIGIQAVLLTLPFVAACLAAGLIGTFLQTGLNASLKPVTPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G K+I+S+ N ++ MK  +K  ++G ++   L     T++  +      I  
Sbjct: 120 FDSLNPVNGFKKIFSLKNFIDLMKLGIKAAVIGVVLWYGLRALMPTIIGLVYEPTPYIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  +  +  + +L    +   D    +  +    +MSK E K E K+S G+P +K ++
Sbjct: 180 ICWRALGILCALAVLVFVLVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPELKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y       P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAY 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A    IPI   P LAR+L  +V +  A+P   ++ VA ++  +
Sbjct: 300 AQNQGIPIVANPPLARALH-EVDLGDAVPESLFETVAVVLRWV 341


>gi|188588311|ref|YP_001920219.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188498592|gb|ACD51728.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E3
           str. Alaska E43]
          Length = 610

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 184/347 (53%), Gaps = 2/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + KK  D+  +G    S++ S+  ++ AC + +   +   + +    L   LA
Sbjct: 262 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 321

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             + +   +++   F+   L L  + + +P  L  M+ G+ + +IQ   ++    +KPS 
Sbjct: 322 FPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 380

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++  +G+K ++S  +LV  +K+ V + ++  +    +  NY  +++  +    S+   
Sbjct: 381 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 440

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  + + I L +  +   D    +     +LKM+KQEIKDE KQ+ G+P +K + K
Sbjct: 441 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 500

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKI 306
              R     +MM++ S AT++ITNPTH A+AL+Y +    +AP +VAKG + +A +++ I
Sbjct: 501 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 560

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++++PI E   LAR ++ +V I+  IP   Y+ VA+++  +   K
Sbjct: 561 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 607


>gi|303326438|ref|ZP_07356881.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3]
 gi|302864354|gb|EFL87285.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. 3_1_syn3]
          Length = 359

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 175/354 (49%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M       ++TE  + K+      EGN P S+E     S+   LI L  +  P    + +
Sbjct: 1   MFGKQQDPSRTEEATPKRRNKQRQEGNVPKSQELGKAVSLTGGLIALHLWLGPMTEEIKT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L  A +    +  ++  L   L++   ++++P LL        +  +Q   +   
Sbjct: 61  LFRRFLGHAWEFD-PNPQNVYTLSIDLTVELCKIILPILLFLGFLAFLAQRLQVGKLWTT 119

Query: 121 NHVKPSFKRVSLREGIKRI-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              K  ++R ++ +G+K++ +S    +  +KS +  I++  I    + + Y   L    A
Sbjct: 120 KVFKFKWQRFNIIKGLKQMMFSPQTALRTIKSLLFSIILALIPGYLIYQEYQNFLPMYYA 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  +  +      K+    LL I  +   D+  S   +   +KM+K E+KDE KQ+ G+
Sbjct: 180 TPEGVAAYMLQMGLKLAYYALLPILAIAAFDVWQSRFAYKEGMKMTKDEVKDERKQAEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK +Q+      +  +MM+   +A +++TNPTH A+ALRY   E  APV++AKG + +
Sbjct: 240 PVIKGQQRRKMMEVVMKRMMQDVPKADVVVTNPTHIAVALRYNAQEAPAPVVLAKGADHL 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A+K++ +A EHN+PI E   LAR+L+K V +   +P   YKAVA ++  I+  K
Sbjct: 300 AEKIKAVAREHNVPIRENVPLARALYKAVEVGDMVPEELYKAVATVLASIWKLK 353


>gi|32471372|ref|NP_864365.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1]
 gi|32443213|emb|CAD72044.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica SH 1]
 gi|327537626|gb|EGF24338.1| flagellar biosynthetic protein FlhB [Rhodopirellula baltica WH47]
          Length = 360

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 175/350 (50%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D+  +K  + S +K   A  +G    S++ +  + +LA +  L          ++  + 
Sbjct: 2   SDSGGDKKHSASERKRRQAREKGQIAKSQDLTSATLLLAAIGALYAIGGNMAAYLSGGIE 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L       + +     ++L  +S   +   +P ++L  + G+   + Q   +L+ + +
Sbjct: 62  QALGETKLAPMTNQDATQYML-QISQRLAMAAVPMMILMFIGGVLINVFQSGLLLSTDKL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P    +S   G KRI S+  ++  +    K+ ++G I  ++L  ++  ++   S +   
Sbjct: 121 MPKLSNISPMSGAKRILSLQGVMRLVFGMFKVGIIGGIAYLALRAHHGDVISMASLSVPQ 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +    F T+  V + I + +  L +L+  + + +    L M+ QE++DE+K +  +P + 
Sbjct: 181 LAKSMFDTLFGVSLWIGVGLFVLALLEYVYQWWKTEQDLMMTDQEVRDEMKDTEADPQVA 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R++ +AR     ++     +A ++ +NPT  A+A++Y      AP++VAKG  +IA+++
Sbjct: 241 ARRRQVARQLAMGQLGSEVPKADVVASNPTELAIAIKYDPLTMPAPIVVAKGAGMIAQRI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A E+ IP+ E   LA++L+K V +   +P   Y+AVA+++  +Y  +
Sbjct: 301 RRLALENGIPVVERKELAQALYKLVDVGQEVPAEQYQAVAEILRYVYQMQ 350


>gi|260778657|ref|ZP_05887549.1| type III secretion inner membrane protein HrpY [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604821|gb|EEX31116.1| type III secretion inner membrane protein HrpY [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 350

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 161/343 (46%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K++ DA  +G    S E      +   L Y +      + ++   + + + S
Sbjct: 3   EKTEKPTQKRLRDARKKGQVIKSNEIVTGFQMAVILGYFIIEGQGMMEAIWKMIDLAITS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                      +V    ++ +   R +   + + ++    S ++Q  PV     +KPSF 
Sbjct: 63  IDLPLKVAAETVVAAFVYILI---RFIAGLVFILVITVAFSCMVQTGPVWASESLKPSFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +V++    K I+S+ +L    K+ +KI+++  +    L ++        +      +   
Sbjct: 120 KVNVINNAKNIFSMKSLFELCKNMLKILVLSLVFYYLLHQHVNMFQYLPTCGVDCGVEII 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           F  ++ +    L+     +V D  + + Q   +LKMSK++ K E K++ GNP +K +++ 
Sbjct: 180 FTLIKWLWGAFLVCYLVFSVGDYAFVHFQTMKQLKMSKEDTKQEYKETEGNPEVKQKRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R      ++    ++T+I+ NPTH A+ L Y   E   P+++ K Q  +A  + ++A 
Sbjct: 240 LQRETANGSLVSNVKKSTVIVRNPTHIAVCLYYQPGETPLPLVLDKAQEHMALHVVEMAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +H +P+ E   LAR+L+ QV     IP   ++ VA+L+  + +
Sbjct: 300 KHEVPLVENIPLARALYHQVEPGQVIPESLFEPVAELLRVVMN 342


>gi|46581635|ref|YP_012443.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601206|ref|YP_965606.1| flagellar biosynthesis protein FlhB [Desulfovibrio vulgaris DP4]
 gi|46451058|gb|AAS97703.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561435|gb|ABM27179.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris DP4]
 gi|311235277|gb|ADP88131.1| flagellar biosynthetic protein FlhB [Desulfovibrio vulgaris RCH1]
          Length = 357

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 176/348 (50%), Gaps = 4/348 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    +TE  + K++  A N+GN   S+E S   +  A L+ + F     +     
Sbjct: 1   MAQKDPS--RTEQATRKRLNKARNKGNVAKSQEVSKAVTTFAGLVAITFMLG-VLNEHMQ 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++     S       +   +  LL   +   + +++P +L   +    +  +Q   +   
Sbjct: 58  EVFRFFLSRPHDFTPNEQTVYSLLLWSAGELAIMLLPIMLFIGLAAFIAMRLQVGKLWTT 117

Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              K  + R ++   +KR++ S   L+   KS ++ + +G    I L +    +L    A
Sbjct: 118 EVFKLDWSRFNVINALKRMFISPQTLIRLGKSLLQAVFIGIAPIIVLKQEMLNLLPLYFA 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +   I  +   T  +++   L+ +  +  +D+ ++   +   LKM+K E+KDE KQ+ G+
Sbjct: 178 DMSGIAVYMLETGARMVKYALVPMVIIAAVDLWYTRWDYNENLKMTKDEVKDERKQAEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P++K++Q+      +  +M++    A ++ITNPTH A+ALRY  T   AP++VA G + +
Sbjct: 238 PVVKSQQRQKMMKVMAQRMLKEVPTADVVITNPTHIAVALRYDVTAAPAPIVVAMGADHL 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           AK++R++A EHN+PI E   LAR+L+K V +   IP   YKAVA ++ 
Sbjct: 298 AKRIREVAREHNVPIRENKPLARALYKSVEVGDMIPAELYKAVAAILA 345


>gi|224825749|ref|ZP_03698853.1| type III secretion exporter [Lutiella nitroferrum 2002]
 gi|224601973|gb|EEG08152.1| type III secretion exporter [Lutiella nitroferrum 2002]
          Length = 380

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 156/353 (44%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D KTE  +  K+  A  +G    SR+ +    +L  L  L F   PG      
Sbjct: 1   MAETRGGD-KTEKATPHKLRQARQQGQVARSRDMASAIGLLVAL-KLAFLSMPGWLDDFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L  +    +    +    L +       ++++P  ++ ++    S L     V   
Sbjct: 59  RLFALSFATLSGQGALGNTWSMLFSGTLTLLVKMILPLAVIPLLVATVS-LFPGGWVFAS 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            H +P   R++      RI S  +  +  KS VK +++G ++                  
Sbjct: 118 RHFQPRLDRLNPLAHFGRIASPQHASDIAKSIVKALVLGAVLYHVSRGAAQDFFALQGVP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A   +   L+ +        ++D+      +  + +MSKQEIKDE K + G P
Sbjct: 178 LDEALSRAASLLMDALLALTAVFIAFALIDLPLQTLLFLRQQRMSKQEIKDEYKTTEGRP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R + +     +  + ++   A ++I NP+HYA+AL+Y +   +AP ++AKG + +A
Sbjct: 238 EIKQRVRQLQLQMAQRGVRKSVPTADVVIVNPSHYAVALKYDEDRAEAPFIIAKGIDEMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 298 LYIRQVAAEHAVEVLPIPPLARAVYHTTQVNQQIPAPLYRAVAQVLTYVLQLK 350


>gi|251779901|ref|ZP_04822821.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084216|gb|EES50106.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 613

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 184/347 (53%), Gaps = 2/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + KK  D+  +G    S++ S+  ++ AC + +   +   + +    L   LA
Sbjct: 265 DEKTEEATPKKKSDSKKKGQVARSKDVSVAITMAACTLAVSMLWGSLVNTFKGVLTYFLA 324

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             + +   +++   F+   L L  + + +P  L  M+ G+ + +IQ   ++    +KPS 
Sbjct: 325 LPSLKDFNELTATNFIAFSL-LKVATVFLPFALAIMISGVAASIIQTGFMITGEPLKPSL 383

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++  +G+K ++S  +LV  +K+ V + ++  +    +  NY  +++  +    S+   
Sbjct: 384 GKLNPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGSE 443

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  + + I L +  +   D    +     +LKM+KQEIKDE KQ+ G+P +K + K
Sbjct: 444 IKNLVVGIFMQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKI 306
              R     +MM++ S AT++ITNPTH A+AL+Y +    +AP +VAKG + +A +++ I
Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++++PI E   LAR ++ +V I+  IP   Y+ VA+++  +   K
Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 610


>gi|171058301|ref|YP_001790650.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6]
 gi|170775746|gb|ACB33885.1| flagellar biosynthetic protein FlhB [Leptothrix cholodnii SP-6]
          Length = 385

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 169/351 (48%), Gaps = 3/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+  +K   P+ ++++ A  +G    SR+ + F+ + A L  L+ F +P +     
Sbjct: 1   MA--DSAQDKHLPPTERRLQKAREDGQVARSRDLAHFAVVAAGLA-LVMFAAPSLTQWLR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL         R +     +   L+ L   A  L +   ++  +  + + ++    V   
Sbjct: 58  DLMATGLRFDVRMVTSPQMMGERLSQLMYPALALCLGLGVVTGLVAMAAAVVSGGWVWTF 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +++   G+ RI S   + + +K+ +  +++ ++    L  +        S  
Sbjct: 118 KPLMPDFSKLNPLTGLGRIVSKAQIGDMLKACLLALILASVGAAYLWAHLNDFALTQSMP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +    A   +   L ++++ +A   ++D+        ++LKMS Q++K+E KQ  GN 
Sbjct: 178 LPAAFIAATDRISTGLWLLMIVLAASAMVDVPLQRFMHRNRLKMSHQDMKEEFKQQEGNQ 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + K   R   R +M+ A   A +++ NPTHYA+AL+Y      AP +VA G +L+A
Sbjct: 238 EVKGKMKQRMREGSRRRMLAAVPEADLVVMNPTHYAVALKYDDASMGAPRIVAMGADLLA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            K+R +A E  +P+ + P LAR+L+    ++  IP   Y AVAQ++  ++ 
Sbjct: 298 LKIRDVAKESKVPVLQSPPLARALYAHGELDREIPLALYSAVAQVLAHVFQ 348


>gi|284041540|ref|YP_003391880.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684]
 gi|283945761|gb|ADB48505.1| flagellar biosynthetic protein FlhB [Conexibacter woesei DSM 14684]
          Length = 358

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 167/345 (48%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D++TE  + +K +DA   G    S + +    ++A L  L       + ++ + +     
Sbjct: 3   DDRTERATPRKRDDARRRGQVARSMDVNGAVVLIAGLFALSLLGPAVVGAMETSMRDSFE 62

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             +  +    +  +  +   +L    L I P   +  + GI + L Q     +   +KP 
Sbjct: 63  RISDPQAALTAGGLEGIAMSTLRTLALAIGPVAAVCAIAGIVANLGQVGLKPSAEALKPQ 122

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +R++   G + ++         KS VK+ ++G I+ +++      +   + A+P  +  
Sbjct: 123 AQRINPLSGARNVFGPRMFFEGAKSIVKVAVIGVIVAMAVAPKMTELSATVGASPGQLAA 182

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V  +     +    +  +D  +  +    +L+MS Q++KDE +       +K+ Q
Sbjct: 183 ELVSLVLSISQRAAIAYLVIGAIDYAYQKYTHEKQLRMSMQDVKDEFRSQQLPAEVKSMQ 242

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +     + R +MM A   A +++TNPTH+A+AL+Y  T+  AP++VAKGQ+LIA ++R++
Sbjct: 243 RRRMMQQARARMMSAVPDADVVVTNPTHFAVALKYDGTK-PAPIVVAKGQDLIALQIRRL 301

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A EH++P+ E   LARSL   V +   IP   Y+AVAQ++  +Y 
Sbjct: 302 AAEHDVPVIENRPLARSLHATVEVGQMIPEDLYQAVAQVLAHVYR 346


>gi|221069313|ref|ZP_03545418.1| type III secretion exporter [Comamonas testosteroni KF-1]
 gi|220714336|gb|EED69704.1| type III secretion exporter [Comamonas testosteroni KF-1]
          Length = 393

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 165/353 (46%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE     +K    + +K++    +G    SR+ S  + +    + +L    P +  +  
Sbjct: 1   MSE---SQDKNLPATERKLQKTREDGQGARSRDLSHLAILGTGALLVLMGTQPMMNHLRE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L        +  + ++     + +    + +   L+     + S +     + + 
Sbjct: 58  AMAQQLV-FNAVTAKTPALMLERFQSMLMLGLGISVIFALVTTTASVLSGVAAGGWIFSF 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S   L   +K     I++G +    ++ N   +    +  
Sbjct: 117 KPIQPRFGKLNPLSGLKNLFSKQQLTTVVKMVFLTIVLGFVAWKYMSANIAEIASVSAQP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +   + ++L+ +  + ++D+      + S+LKMS +E+K E K+S GNP
Sbjct: 177 SPMALAMVGSWLTTGVTLLLVVVLLVALIDVPLQAFLFKSRLKMSHEEVKQEHKESEGNP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +   R       + A  RA  ++TNPTHYA+ALRY      AP ++AKG +L+A
Sbjct: 237 QLKGKIRQKQREIADRASVSAVPRADFVVTNPTHYAVALRYDDATMAAPQVIAKGTDLVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R+IA  H IP+ E P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 297 LKIREIAGAHQIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349


>gi|241763666|ref|ZP_04761716.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN]
 gi|241367141|gb|EER61507.1| flagellar biosynthetic protein FlhB [Acidovorax delafieldii 2AN]
          Length = 384

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 84/349 (24%), Positives = 156/349 (44%), Gaps = 1/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++   K+   + +K++ A  +G    SR+ S  + + A    LL      +  +   L  
Sbjct: 2   ESSQEKSLPATERKLQKAREDGQGARSRDLSHLAILGAGAACLLVLTPQLMEHMQRALGQ 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L       +   + ++  L  + +          +L     + S +     + +   + 
Sbjct: 62  QLR-FDSSTVMAPASMLTRLKDMVMVGLVASAVFAVLTSGAALISAIGAGGWIFSAKPIT 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++   G   ++S   + N  K  +   ++  +    +  +  +M   +       
Sbjct: 121 PQFNRLNPISGAANLFSKQQMANVAKMVLMTAILSFVAWKFMGNSIDSMAMLVLQPSPLA 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L H    +     ++LL +    V+D+    + + S+LKMS +E+K E K+S GNP  K 
Sbjct: 181 LRHVAQWLTSGASLLLLVVFLAAVIDVPLQAYFFKSRLKMSHEEVKQEHKESDGNPHTKG 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R +   R       + A  +A  ++ NPTHYA+AL+Y      AP ++A+G +LIA K+R
Sbjct: 241 RIRQRQREMADRASVGAVPKADFVVMNPTHYAVALKYDDKTMSAPQVIARGTDLIAFKIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A  H IP+ + P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 301 DLAGAHGIPVLQSPMLARALYAHAELDQAIPATLYTAVAQVLAYVYRLK 349


>gi|313681570|ref|YP_004059308.1| flagellar biosynthetic protein flhb [Sulfuricurvum kujiense DSM
           16994]
 gi|313154430|gb|ADR33108.1| flagellar biosynthetic protein FlhB [Sulfuricurvum kujiense DSM
           16994]
          Length = 355

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 174/352 (49%), Gaps = 5/352 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P++KK+EDA  EGN P S++      +   ++ +L  F+  I     
Sbjct: 1   MADD---QEKTEEPTAKKLEDARAEGNVPKSQDVVGVVVLFVSILAVLMMFT-FIADRML 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     S  ++ L D   +V L          + +P  ++  + G+   + Q       
Sbjct: 57  HLSQYYFSLMRQPL-DRELMVDLAVVTMKEFLIMALPVSIIVAVAGVFGTVAQIGFNFTT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F ++   +G   ++++   +  +K  +K      I  +        +       
Sbjct: 116 KPLTPNFSKLDPIKGFANLFTLQKGLESIKITLKSFTALGIGFLYFWYFVEELPTVALFT 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         +  ++LL I    V+D+      ++ KLKMS QEIKDE+K   G+P
Sbjct: 176 LQDQMGWLRDKAIVLASVMLLIIFVYAVIDLFLVRKHYFDKLKMSLQEIKDEMKNMEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + I     R +MM +   A ++ITNPTHYA+A+ Y + +++APV+VAKG + +A
Sbjct: 236 HIKAKIRQIQMQAARKRMMTSVPTADVVITNPTHYAVAIVYDENKHNAPVVVAKGVDNMA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            +++K+A E+ + I + P LARSL+K+V I+  IP + + AVA+++  +Y  
Sbjct: 296 IQIKKVARENGVHIVQNPPLARSLYKEVDIDHPIPDMLFAAVAEVLAYVYKM 347


>gi|331657929|ref|ZP_08358891.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206]
 gi|331056177|gb|EGI28186.1| flagellar biosynthetic protein FlhB [Escherichia coli TA206]
          Length = 345

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 167/313 (53%)

Query: 41  LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100
           +   + +++F    +    S +           + D + I+  +  L   A   ++P + 
Sbjct: 1   MLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLIS 60

Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160
             ++  I S ++    V +   ++P F +++   GIKR++S       +K+ +K ILVG+
Sbjct: 61  GVVLVAIISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGS 120

Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
           +    L  ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       
Sbjct: 121 VTGFFLWHHWPQMMRLMAESPLTAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLK 180

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           KL+MS+Q+I+DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+
Sbjct: 181 KLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQ 240

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y + +  AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y 
Sbjct: 241 YDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYA 300

Query: 341 AVAQLIYKIYHKK 353
           AVA+++  ++  K
Sbjct: 301 AVAEVLAWVWQLK 313


>gi|188997532|ref|YP_001931783.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932599|gb|ACD67229.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 350

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE  + K+ + A  EG    S + S+ +S+    I L+F+       +  
Sbjct: 1   MAKDP---RKTEKATPKRKQKAREEGQVLKSMDVSISASLFVIFIVLIFYLPFAYKYLLG 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 ++      E+    ++    +           +L+  +  I S ++Q   +  L
Sbjct: 58  YFKYTFSNPLYLISENGRMFIWFTLKILAILILP---VILILFVVAIASNVMQFGFLFTL 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   ++++  GIKRI+S+  L   +K+  K+ +   +    +       L +++ +
Sbjct: 115 KPLTPKLDKLNVISGIKRIFSLTVLFELIKNLAKLTVALFLSYFLVKYLLNDFLVYMTGS 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            ++ +Y    T+  +++        + + D  +  +++   LKM+K E+K+E K   GN 
Sbjct: 175 INNQIYVLSKTIIILVMSFAFLSVPIAIADFLYRRYEYEENLKMTKDEVKEERKSYEGNL 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K   +   R     +M+    +A ++ITNP HYA+AL+Y + +  AP ++AKGQ+LIA
Sbjct: 235 LVKREIRKRMRQLALKRMIAEVPKADVVITNPEHYAVALKYERGKMHAPKVLAKGQDLIA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K++++A EH++ I E+P LAR+L+    I   IP   Y+AVA+++ +IY  K
Sbjct: 295 QKIKEVAKEHDVKIVEDPPLARTLYSSCEIGDYIPENLYEAVAKILAEIYKFK 347


>gi|260429624|ref|ZP_05783601.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45]
 gi|260420247|gb|EEX13500.1| flagellar biosynthetic protein FlhB [Citreicella sp. SE45]
          Length = 365

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 162/349 (46%), Gaps = 2/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  D KT  PS +K+E+A  +G  P S +    +  L  L   L      +    +
Sbjct: 1   MAEDDGGD-KTHEPSPRKLEEARRKGEIPRSPDMLTAACYLGMLATGLALGGGSVMGFGN 59

Query: 61  DLHVLLASATQRKLEDISHIVFL-LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  L+    +      + +       + L+A   V+P L +  +  + +    R  V  
Sbjct: 60  ALLPLIEQPDRLVPLFFNDMASAPSGGILLAAITPVLPWLGVPALAVLLTLFATRGLVFT 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + +     R+S  E  K  +    L  F+KS  K++L   ++   L+     +     +
Sbjct: 120 ASKLSLKASRLSPVENAKNKFGRRGLFEFVKSLAKLVLYSVLLGFFLSTRLDEIAGIGRS 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           + H         + ++L +  +    L  +D  W   +   + +MS++E++DE K++ G+
Sbjct: 180 SAHEATALMADLMLRLLGIAAMIAVGLGTIDYLWQRAEHMRRNRMSQKELRDEYKEAEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+ K  +++ A+    ++MM     A ++I NPTHYA+AL++ +   +APV VAKG + I
Sbjct: 240 PMFKQHRRARAQEIAMNRMMVDVPDADVVIVNPTHYAVALKWSRQPGEAPVCVAKGVDEI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A+++R+IA +  +PI  +P  AR++     I   I    Y+ VA  I  
Sbjct: 300 ARRIREIAADSGVPIHSDPPTARAIHATTEIGDQIAAEHYRPVAAAIRF 348


>gi|220925376|ref|YP_002500678.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS
           2060]
 gi|219949983|gb|ACL60375.1| flagellar biosynthetic protein FlhB [Methylobacterium nodulans ORS
           2060]
          Length = 353

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 180/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ +   +++TE P+ K+++DA+  G+   S E +    +    + LL            
Sbjct: 1   MAGDTEQEDRTEEPTLKRLDDAIKRGDVATSVEVNTLFLLGGFTLVLLVAAGSAARGFAL 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+   LAS       D +    +      +    V   +   +  G+   L+Q   V   
Sbjct: 61  DMRGFLASLHAVP-SDAAAYQAVARRALAALGLAVAVPVGAAVAAGLAGGLLQHPFVWTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   ++RVS   G++R++       F K  VKI LVGT+  + L  +   +  F   +
Sbjct: 120 ETLSAKWERVSPLAGLRRLFGPEAWFQFGKGLVKIALVGTVAGLVLWGDRDRLEAFARLD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +IL      V +++  IL     L + D  +   +W ++L+M++ EIK+E+K+S GNP
Sbjct: 180 PAAILPATLVLVLRLMAGILAAYVVLALGDAVYQRLRWRARLRMTRTEIKEELKESDGNP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + +  +R R +MM A   AT+++ NPTH+A+ALRY      APV VAKG + +A
Sbjct: 240 EVKARLRQLRHARARKRMMAAVPTATVVVANPTHFAVALRYETG-MAAPVCVAKGVDALA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R+IA  + +P+ E P LAR+L   V I++AIP   YKAVA++I  +  ++
Sbjct: 299 LRIREIAGANGVPVVENPPLARALHATVEIDAAIPTEHYKAVAEVIGFVLRQR 351


>gi|118592629|ref|ZP_01550019.1| translocation protein in type III secretion [Stappia aggregata IAM
           12614]
 gi|118434680|gb|EAV41331.1| translocation protein in type III secretion [Stappia aggregata IAM
           12614]
          Length = 371

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 171/349 (48%), Gaps = 4/349 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+      KTE P+ KK+ DA  +G    S++     S+L  + YL   +         
Sbjct: 1   MSQQPTG-EKTEQPTHKKLRDARKKGQVARSQDLVTTISLLGVIAYLWLAWDYNFAKFVE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L ++ A           + +  +  +S+    +V+P L +    GI     Q   +   
Sbjct: 60  MLDIVAALHGAGFRASAFNALQAMFDISIV---VVLPLLGVGFALGIAGNYFQFGSIFAF 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++KP  + +S  +G+K+I+S+  LV F+KS +KII +  ++   + +     ++ +   
Sbjct: 117 ENLKPKIENISPAKGLKKIFSVKQLVEFLKSLIKIIFLSVLLFFVIRDAIGPYMNAVQCG 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +       +   L+   L  A ++  D  +   Q   +L M+K E++ E K++ G+P
Sbjct: 177 LQCLTAVTSSMLLTTLLFTALAFAIVSGFDFIFQKFQHKKELMMTKTEVQREYKETEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK R+K +A+  +    ++ T  AT +I NPTH+A+ + Y       P++VAKG+NL A
Sbjct: 237 LIKGRRKQLAQEMVLSDGIDRTRNATAVIVNPTHFAVVIDYKPDIAPLPLIVAKGRNLHA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             +R  A +H +P+F    LARSL+ +  + + +P  +++ +A+++  +
Sbjct: 297 HDLRTEAEKHGVPVFRNVLLARSLYAESDVGAFVPDEWFEVIAKILVWV 345


>gi|296282253|ref|ZP_06860251.1| flagellar biosynthesis protein FlhB [Citromicrobium bathyomarinum
           JL354]
          Length = 374

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 169/353 (47%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      KT AP+ K++ DA N+G+   S++    + +L    +L F     +  +++
Sbjct: 1   MSET--AGEKTFAPTEKRLRDAANKGDVLRSKDLGTAAVMLVGAAWLAFAGPWLLSEISN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L          ++ D      ++  L+ +A   +    +  ++  + S L         
Sbjct: 59  LLRESF-QFDSSEIVDFRPDRLMIEGLT-AALPPIFALAVPVIIVTLLSQLAFGRGRFVA 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +++    R++   G+KR++  N L+   K  +K++L+G +  +  + +Y  +L     N
Sbjct: 117 KNLEFKHTRINPASGLKRMFGPNGLIEMGKGILKVVLLGGLAALWWSYSYENLLGLGRGN 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A+++V  + +++   +  +  +D+   + +   KLKMS QE+KDE K+S G+P
Sbjct: 177 LSQQLTTAWWSVISLFLVLCGGLVVIAAVDLPIQWVRRNKKLKMSHQEMKDENKESEGSP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
             K+ ++   R      +  A   A  +ITNPTH+A+AL Y   +  AP+++AKG+   A
Sbjct: 237 EAKSARRQRQRDIAAGSVSGAMREAQFVITNPTHFAVALSYDPEKASAPIVLAKGRGEKA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             M+++A E  +P  E P LARS++        I    Y A+A ++  +   K
Sbjct: 297 LAMKELAREFGLPTLEYPQLARSVYFTSRERQVICEDLYGAIAAVLAYVLSLK 349


>gi|307720616|ref|YP_003891756.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM
           16294]
 gi|306978709|gb|ADN08744.1| flagellar biosynthetic protein FlhB [Sulfurimonas autotrophica DSM
           16294]
          Length = 350

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 183/352 (51%), Gaps = 5/352 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ KKIEDA  EGN P S++AS   ++   ++ +L  F P +     
Sbjct: 1   MADD---QEKTEEPTPKKIEDARKEGNVPKSQDASGVLTLFVAILGVLMLF-PFMAEHMI 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     S     ++ +  +   +  +      +V+P      + G+ + L Q   +   
Sbjct: 57  HLFRYYFSLIGMPVDKLFAMDIAIVTI-KEFLLMVLPLATAVAISGVIAALAQFGFLFTT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P FK++   +G K ++S+  L+  +K  +K      +  I        +       
Sbjct: 116 KAIMPDFKKIDPIKGTKNLFSLKKLIEGVKVTLKSFTTLGVGFIFFFYFIQELPTVALFG 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            H  L      +  +  ++L  I    ++D+     Q++  LKMSKQEIKDE+K   G+P
Sbjct: 176 LHDQLMWLKDKMIIIAFVMLFIIFIFAIIDVIIVRKQYFDGLKMSKQEIKDEMKNMEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK++ + I     + +MM     A ++ITNPTHYA+A++Y ++++ AP++VAKG + IA
Sbjct: 236 LIKSKIRQIQMEASKKRMMAEVPNADVVITNPTHYAVAIKYDESKSHAPLVVAKGMDNIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           ++++KIA E+++ I + P LARSL+K+V ++  IP   + AVA+++  +Y  
Sbjct: 296 QQIKKIARENSVHIVQNPPLARSLYKEVDVDKPIPEALFSAVAEVLAYVYKM 347


>gi|332294884|ref|YP_004436807.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense
           DSM 14796]
 gi|332177987|gb|AEE13676.1| flagellar biosynthetic protein FlhB [Thermodesulfobium narugense
           DSM 14796]
          Length = 349

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 177/349 (50%), Gaps = 8/349 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              ++TE  + ++  +A   G    S+E S         I L FF   G  +  +     
Sbjct: 4   DEGDRTEPATDRRRREARKMGQVAKSQELSSILVFFGSYIVLQFFLVIGFNNWFNVWKGF 63

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +        D   +     +  ++   L IP ++  +   + S ++Q   V+    + P
Sbjct: 64  FS-------FDSLDLNLHYHNFIMAFLLLTIPPVVGALFMALFSNILQVGFVITPQVLIP 116

Query: 126 SFKRVSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
            F  + + +  KR+ S   LV+  +K  +KI+++  I+T SL E +  +L+    + H  
Sbjct: 117 KFSNLDITKYFKRLLSFRGLVDQVLKPTIKILILAYILTSSLLEAFPEILNLSFIDVHKG 176

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                  V  +L+  ++ +    ++D  +   Q+   ++MSKQE+K+E K + G+P+IK 
Sbjct: 177 FQIVIKIVTSILVKTMVVLFFFALIDYLFQRWQYEKSIRMSKQELKEEFKTTEGDPLIKA 236

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R K +     R +MM+   +A +IITNPTH A+A+ Y   +  AP +VAKG  ++A+K+ 
Sbjct: 237 RIKRLQSEMARRRMMQEVPKADVIITNPTHVAVAIFYDPEKFKAPKVVAKGMGIVAEKII 296

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +IA E+++P+    +LAR+LFK+V IN  IP  FYKAVA ++  +Y KK
Sbjct: 297 QIAKENDVPLVRNETLARALFKEVEINFEIPEKFYKAVASILATVYKKK 345


>gi|260431743|ref|ZP_05785714.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415571|gb|EEX08830.1| flagellar biosynthesis protein FlhB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 361

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 169/353 (47%), Gaps = 9/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+   + +K++ A  +G    S + S  ++     I LL         + +
Sbjct: 1   MSGQDDDSDKSFEATPQKLQKAREKGEVVKSNDLSAVAAYAGLTIALLAAGQYSAVHLGT 60

Query: 61  DLHVLLASATQR-----KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
            L VL+  +        +      ++ LL  ++LSA  L    L +  +  + + L QR 
Sbjct: 61  ALMVLVDQSPSLSSLLVEGASTGPVLGLLKAVALSAGTL----LAVPTVVVLLNLLAQRA 116

Query: 116 PVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLD 175
            V   + +KP   R+S+    K  +    L  F+KSFVK+++    + + L  N   +L 
Sbjct: 117 IVFAPSKLKPKPSRISIPSNAKNKFGRGGLFEFLKSFVKLVIYCACLALFLQANLSQILS 176

Query: 176 FISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +A P + +      +   L +++     + V+D  W Y +   K +MS++E++DE K 
Sbjct: 177 AAAAPPRASILLMMNLLFHFLFIVVAITLAIGVIDYLWQYSEHMRKNRMSRKELQDETKD 236

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKG 295
           S G+P +K  ++  A+     +MM    +A ++I NPTHYA+ L++ +T   APV VAKG
Sbjct: 237 SEGDPHVKQHRRQRAQEIATSQMMSDVPKADVVIVNPTHYAVVLKWDRTPGTAPVCVAKG 296

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
            + +A  +R IA E  +P+  +P  AR+L   V I   IP  +Y+ VA  I  
Sbjct: 297 VDEVAATIRSIAIEAGVPLHSDPPTARALHATVEIGQEIPEDYYRPVAAAIRF 349


>gi|325917015|ref|ZP_08179254.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536766|gb|EGD08523.1| HrcU protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 357

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 164/343 (47%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++DA  +G  PIS + +  + +LA L+ +    S  +  + + + +  
Sbjct: 2   SDEKTEKPTEKKLQDARRDGEIPISPDVTAAAVLLAALLVMKLAGSYFVEHMNALVSIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + +   L  + +  + L +P ++  +  G+    +Q     +L  V P 
Sbjct: 62  D--FTANTRDATALNRALARIGIQGALLTLPFVVACLAAGLIGTFLQTGLNASLKPVTPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+++++S+ +L+N +K  +K  ++G ++   L     T++         I  
Sbjct: 120 FDSLNPVNGVQKLFSLRSLINLLKLGIKAAVIGVVLWYGLRALMPTIIGLAYQPVPDIAQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  +  +  + +L    +   D    +  +    +MSK E K E K+S G+P +K ++
Sbjct: 180 IGWRALGILSALAVLVFVLVGAADWSIQHWLFIRDKRMSKDEQKREHKESEGDPEVKGKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K  A+  +     E  ++A +++ NPTHYA+AL Y       P +VAKG +  A ++R  
Sbjct: 240 KEFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDGFGLPQVVAKGVDDGALELRAY 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+   IPI   P LAR+L   V +  A+P   ++ VA ++  +
Sbjct: 300 AHNQGIPIVANPPLARALH-LVELGEAVPESLFETVAVVLRWV 341


>gi|34498065|ref|NP_902280.1| secretion system apparatus protein SsaU [Chromobacterium violaceum
           ATCC 12472]
 gi|34103920|gb|AAQ60280.1| type III secretion system EscU protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 351

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 162/338 (47%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI DA N+G    S E +    +   L Y  F     + ++   L+V ++ 
Sbjct: 3   EKTEKPTPKKIRDARNKGQVAKSTEITSGVQLAVLLAYFCFEGPHLLQALQGMLNVAISV 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q  +  I+ +      L++   R +     L ++  I + + Q  P+L    +KPS +
Sbjct: 63  VNQDLVFGINQLTGAFLELAM---RFLGGIAALVIIMTIAAVIAQIGPLLATEALKPSLE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++    +K+++S+ +L  FMKS  K+ ++  I    L +   ++     ++  + +  +
Sbjct: 120 KLNPVSNLKQMFSMRSLFEFMKSIFKVTILSLIFFYLLRQYSPSIQFLPLSDVATGMRVS 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +   ++ F     + D  +  +    +L MS ++IK E K S GNP IK ++K 
Sbjct: 180 TQLLFWMWASLIGFYIIFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKQKRKE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R      + +  S++T ++ NPTH A+ LRY   E   P + A G++ +A  + K+A 
Sbjct: 240 AHREIQSGSLADNVSKSTAVVRNPTHIAVCLRYQPGETPLPQVTAVGRDAMALHIVKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +  IP+ E   +AR+L  +  I   I    ++ VAQ++
Sbjct: 300 KAGIPVVENIEVARALAAKTKIGGYISAELFEPVAQIL 337


>gi|187933790|ref|YP_001885058.1| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721943|gb|ACD23164.1| flagellar biosynthetic protein FliR/FlhB [Clostridium botulinum B
           str. Eklund 17B]
          Length = 613

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 183/347 (52%), Gaps = 2/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
           D KTE  + KK  D+  +G    S++ S+  ++ AC + +   +   + +    L   L 
Sbjct: 265 DEKTEEATPKKKSDSKKKGQMARSKDVSVAITMAACTLAVSMLWGSLVDTFKGVLTYFLV 324

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             + +   +++ +  L++   L  + + +P  L  M+ G+ S +IQ   ++    +KPS 
Sbjct: 325 FPSLKDFNELTAMS-LISFSLLKVATVFLPFALAIMIAGVASSIIQTGFLITGEPLKPSL 383

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++  +G+K ++S  +LV  +K+ V + ++  +    +  NY  +++  +    S+   
Sbjct: 384 GKINPLKGLKNMFSKRSLVGLIKNVVVVTIISILAYKYVKNNYVDIINISNLYLPSLGDE 443

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               V  +   I L +  +   D    +     +LKM+KQEIKDE KQ+ G+P +K + K
Sbjct: 444 IKNLVIGIFKQITLALVIIGATDYFVQFRLHNKELKMTKQEIKDEYKQAEGDPQLKAKIK 503

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE-NDAPVLVAKGQNLIAKKMRKI 306
              R     +MM++ S AT++ITNPTH A+AL+Y +    +AP +VAKG + +A +++ I
Sbjct: 504 QKQREMGMRRMMQSVSDATVVITNPTHLAIALKYEEGGNMEAPKVVAKGADNVALRLKTI 563

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++++PI E   LAR ++ +V I+  IP   Y+ VA+++  +   K
Sbjct: 564 AKDNDVPIVENKPLARLMYDRVEIDQDIPQDLYQGVAEVLAIVLKLK 610


>gi|297516775|ref|ZP_06935161.1| flagellar biosynthesis protein FlhB [Escherichia coli OP50]
          Length = 345

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 168/313 (53%)

Query: 41  LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100
           +   + +++F    +    S +           ++D + I+  +  L   A   ++P + 
Sbjct: 1   MLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLIS 60

Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160
             ++  + S ++    V +   ++P F +++   GIKR++S       +K+ +K ILVG+
Sbjct: 61  GVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGS 120

Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
           +    L  ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       
Sbjct: 121 VTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLK 180

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           KL+MS+Q+I+DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+
Sbjct: 181 KLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQ 240

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y + +  AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y 
Sbjct: 241 YDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYA 300

Query: 341 AVAQLIYKIYHKK 353
           AVA+++  ++  K
Sbjct: 301 AVAEVLAWVWQLK 313


>gi|87307411|ref|ZP_01089556.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM
           3645]
 gi|87290151|gb|EAQ82040.1| flagellar biosynthetic protein FlhB [Blastopirellula marina DSM
           3645]
          Length = 369

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 179/353 (50%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D  D+K+E P+  + ++A N+G    S++  + + +L   + ++ +FS  I+    
Sbjct: 1   MAEQD--DDKSEDPTQHRRDEARNQGQITKSQDL-ISAGMLVIALGVIMYFSQSIFHFFG 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D      S            +          + ++ P LLL  +  I   L+Q   +   
Sbjct: 58  DFTRDKLSVPPPLEVSFGWAINENATAVWRLASVMTPILLLMFVAAIALNLMQTGFLFLP 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +    KR++   G  R++++ N V F    +K+++V T+  +SL  +  T+L     +
Sbjct: 118 DKLSLDIKRINPMSGFGRLFALANFVKFGFGIIKVLIVSTVAAVSLYYDMPTILGLSELS 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I      T     + I   +  L ++D  + + +    LKM+KQE+++E+K   G+P
Sbjct: 178 AGEIASFLLTTAFWTSMKIAAALLILALMDYAFQWWKHEQDLKMTKQEVREEMKSLQGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +  R++ +AR    ++M     +A  ++TNPT  A+AL+Y   +  AP++VAKG  L+A
Sbjct: 238 SLIARRRQVARQLAMNRMSTDVPKADFVVTNPTELAIALKYDPYKMAAPIVVAKGAGLVA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R++A E NIPI E   LAR+L++   I+ AIP   Y AVA+++  +Y  +
Sbjct: 298 QRIRRLALESNIPIVERKELARALYRDAEIDQAIPAEQYAAVAEVLRYVYELQ 350


>gi|217976220|ref|YP_002360367.1| flagellar biosynthesis protein FlhB [Methylocella silvestris BL2]
 gi|217501596|gb|ACK49005.1| type III secretion exporter [Methylocella silvestris BL2]
          Length = 359

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 135/352 (38%), Positives = 219/352 (62%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ ++ +++TE  + KKI D L  GNAP SREA+LF+S+ A LI   FF    I S+T 
Sbjct: 1   MAD-ESTESRTEEATEKKIGDELERGNAPFSREAALFASVSAMLIIGAFFAQQCIASMTL 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            LH LL  A   +L + +  V L+  +S    +++I   ++F   G+ +  +Q  P L +
Sbjct: 60  LLHHLLDDAGGVRLRNGNDAVALMKLVSWDVFKVLIAPFVVFAAGGVLASALQNAPRLVV 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P+FKR+SL EG +R++       F KS VK+  +  I+   L      +++ ++  
Sbjct: 120 DRILPNFKRISLTEGWQRLHGARGYAEFSKSVVKLASISVIVLAVLQSQQNKLVNAVALE 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++         K++ ++ +  A L  +D+ WS   W   ++MS+QEIKDE+KQS G+P
Sbjct: 180 PEALPELILSVAMKLMSVVCIVTAALLAIDLVWSRFHWRRDMRMSRQEIKDEMKQSDGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           + K R +S+A+ R+R  M+ A  +AT++I NPTHYA+ALRY++ E  AP++++KGQ+LIA
Sbjct: 240 VRKARLRSLAQDRVRKNMIAAVPKATLVIANPTHYAIALRYVKEEGGAPMVISKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R++A  H+IPI E+  LARS++  V ++  IPP FYKAVA+LI+ +Y K
Sbjct: 300 LKIRELAERHSIPIIEDKLLARSMYDSVEVDHPIPPQFYKAVAELIHYLYSK 351


>gi|254255044|ref|ZP_04948361.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124899689|gb|EAY71532.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 379

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 83/354 (23%), Positives = 157/354 (44%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS   +  +KTE  + +K+  A   G    SR+ +     L  L   +      +     
Sbjct: 1   MSGGQSTGDKTEKATPQKLRKAKQRGQVARSRDIATAIGTLVSLKLAIVLAPAWL----D 56

Query: 61  DLHVLLASATQRKLEDISH---IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           D   L A++   +  D      +  L     L   +++ P   +     +GS L     V
Sbjct: 57  DFRRLFAASLVERFADGGAEHAMSTLFVTALLLIGKMLAPFAAVPACIVVGS-LFPGGWV 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +  +  P  +R++   G+KR+ S  + +    +  K  ++G  +      +    +   
Sbjct: 116 FSHENFMPKAERLNPMSGLKRLVSGKHYMQLAITVAKATVLGATLWHVGRSSIDRFVGLQ 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                + L           ++++  +    ++D+      +    +MSK+++KDE+KQS 
Sbjct: 176 RVPFETALAGGAALFVDATLVLVGVLVAFAMIDVPLQRMLFMRGQRMSKRDVKDEMKQSE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G P +K R + I R   R  + +    A +++ NPTHYA+AL+Y  ++  AP +VAKG +
Sbjct: 236 GKPEVKGRIRQIQRQMARRGIRKVVPDADVVLMNPTHYAVALKYDVSKAQAPYVVAKGID 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A  +R +A EH I + E P LAR+++    +N  IP   Y+AVA++++ +  
Sbjct: 296 ETAHFIRDVAREHAIEVLELPPLARAIYHSSQVNQQIPAALYQAVAKVLFYVLQ 349


>gi|58039957|ref|YP_191921.1| flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H]
 gi|58002371|gb|AAW61265.1| Flagellar biosynthetic protein FlhB [Gluconobacter oxydans 621H]
          Length = 358

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 177/353 (50%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D    KTEAPSS++++ A  +G   +SREA  F ++L     +       +     
Sbjct: 1   MSDSDD---KTEAPSSQRLQKAREDGQIVMSREAMNFVALLGGFAGIFMVLPYLVMDFVH 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + VL+A+A    +     ++    H   +  +L +P      +  +G   +Q   +++ 
Sbjct: 58  VMQVLMANAGTVPMAQ-GGLLNSTDHAIEAGLKLAVPMAATVAVLCLGGGFLQTGFLIHP 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F+R+S   G KRI     L +  K+  K  +   ++         +    +   
Sbjct: 117 ESLLPKFERISPLAGFKRIAGGGTLPDTFKALAKFAIFAVVLWNISKGAIPSAPRMVGLE 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +L        +    ++L    +   DI W   +  SKLKMS++++KDE K + G+P
Sbjct: 177 PGPLLKMMTDLGFRAASAMILAQLVIAGFDIFWMRFRHISKLKMSREDLKDEYKNTEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K RQK++     R +MM A   AT+++TNPTHYA+AL Y +    AP +VAKG + +A
Sbjct: 237 HVKGRQKALRAKAARQRMMAAVKTATVVVTNPTHYAVALVYERGGGGAPRIVAKGMDDVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R IA ++ IPI   P LAR+LF  +P++S IP   +K VA +I  ++  K
Sbjct: 297 ARIRDIAQDNRIPIVANPPLARALF-TLPLDSEIPAEHFKVVAAIIAYVWKLK 348


>gi|196045084|ref|ZP_03112317.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB108]
 gi|196024086|gb|EDX62760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB108]
          Length = 348

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|254464574|ref|ZP_05077985.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I]
 gi|206685482|gb|EDZ45964.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium Y4I]
          Length = 362

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+  P+ +K+  A  +G    S + S+ ++ L  +I      S  +  + +
Sbjct: 1   MSGQDDDSDKSFEPTEQKLRKAREKGEVAKSTDLSVAAAYLGLIIAFYTAGSSSVEGIGT 60

Query: 61  DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L   L    +   L         +     SA R V+P  L+     + S + QR  V  
Sbjct: 61  ALMAYLDQPDRLAPLFFEGPAAAPVGGFIGSAFRPVLPWFLVPFALVLLSIVGQRAMVFA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++P   R+S+    K  +    L  F KSFVK+ L    + + L+     M+     
Sbjct: 121 PSKLEPKLSRISIVSNAKNKFGRAGLFEFFKSFVKLSLYSVCLGVYLSHRLPEMIASSGT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P S++        + L + L+    + V+D  + + +   K  MS++EI+DE+K + G+
Sbjct: 181 GPQSVVLMLAQLSMEFLFLALIIALAIGVVDAAFQHAEHLRKNMMSRKEIQDEMKDAEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K++++   +     +M+    +A ++I NPTHYA+AL++ +    APV VAKG + I
Sbjct: 241 PHMKSQRRQRGQQIAMGQMLADVPKADVVIVNPTHYAVALQWSREPGAAPVCVAKGVDEI 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A  +R++A E+ IPI  +P  AR+L   + I   I    Y  VA  I  
Sbjct: 301 AAAIRRVANENAIPIHSDPPTARALHAAIGIGDEILEEHYAPVAAAIRF 349


>gi|289433957|ref|YP_003463829.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170201|emb|CBH26741.1| flagellar biosynthetic protein FlhB [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 348

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 180/341 (52%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGGMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L         +++ I        +   ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQP-----PNLASIESYSLFYIMEFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  LV  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 KQIFSLFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|254292632|ref|YP_003058655.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814]
 gi|254041163|gb|ACT57958.1| flagellar biosynthetic protein FlhB [Hirschia baltica ATCC 49814]
          Length = 354

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 180/351 (51%), Gaps = 2/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+     KTE P+ K+++DA  +G+   S++  ++  +      L+    P   S+  
Sbjct: 1   MAEDQDDSQKTEEPTQKRLDDARKKGDIAKSQDVPVWFIL-LAGAALIAGAQPLASSIGG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L +LL      +L        L+T +       +     + ++F I  +++Q +P+   
Sbjct: 60  PLTMLLDHPHDFQLSG-GGAQRLMTAILGELLGPMAIVFSIIIVFAISGHVVQHMPLWTA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++S   G+KR++     +N  K+ +K+I     +  ++  +   ++     +
Sbjct: 119 EKMKPKLSKLSPIGGLKRMFGPQGWMNLFKAILKLIAATVAVAFAVWPSRHELIKVGEMD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++         ++ +  L+ +  +  +D  +       K++MS+++IK E KQS G+P
Sbjct: 179 ISALPLMIQDKASRLFLAALIVVGFIAAIDYVFQKQSHAKKMRMSREDIKQENKQSDGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K +  ++ R R + +MM A   AT+++TNPTHY++AL++    + AP+ VAKG + +A
Sbjct: 239 MVKAKLAALRRQRSQGRMMAAVPEATVVVTNPTHYSIALKFDPEVDAAPICVAKGVDEVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            ++R+IA E ++P+ E P LAR+LF    +   +P   ++AVA++I  +  
Sbjct: 299 LRIREIAKESDVPLVESPPLARALFATAELEQVVPREHFEAVAKVISFVMR 349


>gi|218896703|ref|YP_002445114.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           G9842]
 gi|218542717|gb|ACK95111.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           G9842]
          Length = 348

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|268316329|ref|YP_003290048.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252]
 gi|262333863|gb|ACY47660.1| flagellar biosynthetic protein FlhB [Rhodothermus marinus DSM 4252]
          Length = 360

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/349 (29%), Positives = 178/349 (51%), Gaps = 2/349 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             D K   P+ ++++ A  EGN   S+E S    +L  L+ L          +       
Sbjct: 3   DRDQKQFDPTPRRLQKAREEGNVFRSQETSAVLLLLGGLLTLALSLPYAYGLMRQFTART 62

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L SA    L   S ++  L    +   RL++P   L ++   G  + Q      L  + P
Sbjct: 63  LMSAPFYPLTSGS-VIGALQEALMVLGRLLVPFFALLLVIAFGVNVWQTGWHPTLKPLLP 121

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R+S   G++R++S   L N +K+ +KI +VG I  + +  +   +L+  + +  +IL
Sbjct: 122 KPERISPLRGLQRLFSSRGLFNVLKALLKIAIVGPIAFLVIYRHLPEILELHTHSLEAIL 181

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + ++    L  +  L+  D  +   ++   LKM+ QE+KDE +++ G+P++K+R
Sbjct: 182 QATGLWMLQLAAYTLGALLLLSAADFAYEKWKYRQDLKMTAQEVKDEHRETEGDPMVKSR 241

Query: 246 Q-KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + K       R ++  A  R+ ++ITNPTHYA+ALRY  +E  AP ++AKG    A ++R
Sbjct: 242 RLKKARELARRRRLDHAVLRSDVVITNPTHYAVALRYDPSEAPAPRVLAKGIRKRALRIR 301

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +A EH IP+ E+P LAR+L+  VP    IP   Y AVA ++ +IY ++
Sbjct: 302 ALALEHGIPVVEDPPLARALYHNVPEEQEIPEELYLAVATILAEIYRQR 350


>gi|300117307|ref|ZP_07055097.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1]
 gi|298725142|gb|EFI65794.1| flagellar biosynthesis protein FlhB [Bacillus cereus SJ1]
          Length = 348

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F   +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHSFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT ++ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFVVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|258404720|ref|YP_003197462.1| flagellar biosynthesis protein FlhB [Desulfohalobium retbaense DSM
           5692]
 gi|257796947|gb|ACV67884.1| flagellar biosynthetic protein FlhB [Desulfohalobium retbaense DSM
           5692]
          Length = 354

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 182/353 (51%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+     + +TE P+ K+  +   EG    S+E +    +   L+   ++    +  +  
Sbjct: 1   MA-QQGDEERTEEPTEKRRREFREEGKVAQSKEVNTALLLSTALLLWFWYAPNFVEGLER 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L      A    +     +V  L    +    L+ P L+L ++ G  S  IQ   + + 
Sbjct: 60  FLAGFWDQAGYWNV-TPQAVVGWLGKGLIHLGLLLSPILILSIVVGFLSSYIQFGWLFSP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P  K++   +G  +  S  + +  +KS  K+ +VG++   +L++++   +  I   
Sbjct: 119 KALQPDIKKLDPIQGAAKFVSKRSAMELLKSLAKVAVVGSVAYWTLSDHFEQAIQLIGQP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I     +T  ++L+   + +  + V+D  ++  +   ++KM+K+E++DE K++ G+P
Sbjct: 179 IERIFVFIGWTAAEILLKCCIALLFIAVIDFAYTKWEMEEQMKMTKKELQDEHKETEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +SI R   R +MM    +A ++ITNPTHYA+ALRY ++  +AP + AKG N++A
Sbjct: 239 QLKQRMRSIQRDMARKRMMAEVPQADVVITNPTHYAVALRYDRSSMEAPEVTAKGSNIVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R+IA E  +P+ E P +AR L   + +   +P   YKAVA+++  +Y  K
Sbjct: 299 QRIREIAEESGVPLVENPPVARVLHG-LELGETVPESMYKAVAEILAYVYSLK 350


>gi|229155340|ref|ZP_04283450.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342]
 gi|228628055|gb|EEK84772.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 4342]
          Length = 348

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|229121321|ref|ZP_04250552.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201]
 gi|228662166|gb|EEL17775.1| Flagellar biosynthetic protein [Bacillus cereus 95/8201]
          Length = 348

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 178/348 (51%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +   K
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344


>gi|319764528|ref|YP_004128465.1| type iii secretion exporter [Alicycliphilus denitrificans BC]
 gi|330826744|ref|YP_004390047.1| type III secretion exporter [Alicycliphilus denitrificans K601]
 gi|317119089|gb|ADV01578.1| type III secretion exporter [Alicycliphilus denitrificans BC]
 gi|329312116|gb|AEB86531.1| type III secretion exporter [Alicycliphilus denitrificans K601]
          Length = 386

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 162/349 (46%), Gaps = 1/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
            +  +K    + +K++ A ++G A  SR+ S  + +    + LL      +  +   L  
Sbjct: 2   SSSQDKNLPATERKLQKARSDGQAARSRDLSHLAILGTGALALLVLAPWFVEYLQRALRQ 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L       ++    ++  L  ++           LL     + S +     + +L  + 
Sbjct: 62  QLV-FNAATVQMPGEMLSRLRTMAGVGLLASAAFALLTSGAALLSAIGAGGWIFSLKPIT 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++   G   ++S   + N  K  +   ++  +    +  +   M   +       
Sbjct: 121 PQFNRLNPLSGFANLFSKQQMANVAKMVLMTGILAAVAWNFMGRSIEQMAALVLQPSPLS 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L HA   +   + ++LL +    V+D+      + S+LKMS +E+K E K+S GNP +K 
Sbjct: 181 LRHAGQWIVSGMSLLLLVVFLFAVIDVPLQAFFFKSRLKMSHEEVKQEHKESDGNPQLKG 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           RQ+  AR       + A  +A  ++ NPTHYA+AL+Y +    AP +V+KG +L+A ++R
Sbjct: 241 RQRQRAREIADRASIAAVPKADFVVMNPTHYAVALKYDEASMGAPQVVSKGTDLLAFRIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++A +H +P+ + P LAR+L+    +   IP   Y AVAQ++  +Y  K
Sbjct: 301 ELAQQHGVPVLQSPMLARALYAHAELEQPIPAQLYTAVAQVLAYVYRLK 349


>gi|320187319|gb|EFW62016.1| Flagellar biosynthesis protein FlhB [Shigella flexneri CDC 796-83]
          Length = 341

 Score =  315 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 167/309 (54%)

Query: 45  IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104
           + +++F    +    S +           ++D + I+  +  L   A   ++P +   ++
Sbjct: 1   MCVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVL 60

Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
             + S ++    V +   ++P F +++   GIKR++S       +K+ +K ILVG++   
Sbjct: 61  VALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGF 120

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
            L  ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+M
Sbjct: 121 FLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRM 180

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           S+Q+I+DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + 
Sbjct: 181 SRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDEN 240

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           +  AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+
Sbjct: 241 KMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAE 300

Query: 345 LIYKIYHKK 353
           ++  I+  K
Sbjct: 301 VLAWIWQLK 309


>gi|94495442|ref|ZP_01302022.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
 gi|94424830|gb|EAT09851.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
          Length = 378

 Score =  315 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 2/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+       KTE P+ KK++DA  +G+   SRE      ++A  I  L    P +     
Sbjct: 1   MAGGSEGGEKTEKPTPKKLQDAAKKGDILQSRELGTALVVMAG-IGCLAVIGPSLIDALR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           D+ V      +  + D S     L  L+ S +  V   +L   +  I +  +        
Sbjct: 60  DMLVEALRIRREDIVDFSPAKRGLDLLA-SIALPVAGVMLATFLAAIAAPALLGSLGFRP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P  ++++   G+KRI+ +  L+  +KS  K+ L+G+I    + +    +     A 
Sbjct: 119 GAFAPKPEKLNPLSGLKRIFGMQGLIELLKSIAKVGLLGSIGVWLIWDRLTEITGLGKAG 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +           +++   +  +  +D+     Q   +L MSKQE+KDE K+S G+P
Sbjct: 179 IAPAIADVGNIFIFTCLVMAGGLFLIAGIDVPAQIMQRAKRLGMSKQEVKDEHKESEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   +      +     +A + A++IITNPTH+A+ALRY   ++ APV+VAKG + IA
Sbjct: 239 ELKGHIRRRQFEVLSGSTRKAVAEASVIITNPTHFAVALRYKPGQDAAPVVVAKGCDAIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             +R +A  H + + + P LAR+++        +    Y AVA ++  ++ 
Sbjct: 299 ASIRDLADTHGVTVLQYPELARAIYFTSRAGQIVNEGLYMAVATVLAFVFR 349


>gi|294084388|ref|YP_003551146.1| flagellar protein flhB [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663961|gb|ADE39062.1| Flagellar protein FlhB [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 385

 Score =  315 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 170/358 (47%), Gaps = 11/358 (3%)

Query: 1   MSENDAP-DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E  +    KTE PS +K+E A  +G    S+EA +F+++   ++ ++   S     +T
Sbjct: 1   MAEESSDGQEKTEDPSERKLEKAREDGQVLSSKEAFVFTTLAMAVVLMMGLSSVSSAGLT 60

Query: 60  SDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
               +    +A          +V     + + ++ + +P +++ +   +           
Sbjct: 61  HWGTLFRWDNADHIDTLAFGKLVQSFWMIIIISTIIGVPMMIVTLFTQLAV----GGVNF 116

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               +     R++   G+KR++S  +LV   KS +K++L+  +  + +     ++L    
Sbjct: 117 APKSMAFKANRINPISGLKRMFSAKSLVELGKSILKVVLLFGVAGLLIYGQLPSILRLSE 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              +  +         +L  +L+ +  +  +D  W  +    KLKMS+QE KDE KQ+ G
Sbjct: 177 GTLNGAIEKMGDVFPALLGAMLIVLFIIAAIDYSWQSYSHTKKLKMSRQEQKDEHKQTEG 236

Query: 239 NPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           +P +K + + +   +      + + +E  + AT IITNPTH+A+AL+Y+  E  APV++A
Sbjct: 237 SPEVKAKIRRMQMEQSQASSQQRESLENVADATAIITNPTHFAVALKYVAGEAGAPVVLA 296

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            G+  IA+++ + A +  I I   P LAR+LF    I   I    Y AVA  +  IY 
Sbjct: 297 MGKGRIAEQIIERANDSKITIMRSPLLARALFFTSDIGGEISEKLYNAVAIALAYIYR 354


>gi|228920479|ref|ZP_04083824.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229189867|ref|ZP_04316877.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876]
 gi|228593541|gb|EEK51350.1| Flagellar biosynthetic protein [Bacillus cereus ATCC 10876]
 gi|228839109|gb|EEM84405.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 348

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|83944181|ref|ZP_00956637.1| flagella-associated protein [Sulfitobacter sp. EE-36]
 gi|83955118|ref|ZP_00963774.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1]
 gi|83840447|gb|EAP79620.1| flagella-associated protein [Sulfitobacter sp. NAS-14.1]
 gi|83845048|gb|EAP82929.1| flagella-associated protein [Sulfitobacter sp. EE-36]
          Length = 375

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 178/357 (49%), Gaps = 4/357 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN     KT  P+ KK++DA  +G+ P S+E      ++A L             +  
Sbjct: 1   MAENSDSTEKTLEPTEKKLKDARKKGDVPSSKETGNMVVVVAMLGIAALVLPYQAPQIVV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLS----LSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            L VLL  +    +      V  L  +           V+P   +  + G    +IQ   
Sbjct: 61  ALSVLLDHSPNLMVATGEPGVIRLGQIMSEFFYMIVWAVLPIFGVLFLGGAIGAVIQGET 120

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           V+    +KP   ++S  EG+KR++S N LV F KS VK++ +G +      E    +   
Sbjct: 121 VVAAERIKPKLSKLSPLEGLKRLFSANALVEFAKSIVKVLAIGGLAVWFTNEAVRRIWTS 180

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
               P  +  +      K+LI   + +  + + DI W    W  K +MS+++IKDE K+S
Sbjct: 181 SGFIPEHLPGYLTAAAVKLLIAAAILLVPIAIADILWRRFDWRRKQRMSQKDIKDEHKES 240

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P I+ ++    R   + + + A   A +I+TNPTHY++AL+Y   ++ APV +AKG 
Sbjct: 241 EGSPEIRQKRARRRRELSQQRTITAVPLADVILTNPTHYSIALKYDPAQDMAPVCIAKGA 300

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A+++R++A EH+IP+ E   L R L+ ++ ++  IP   ++ VA++I  ++  +
Sbjct: 301 DHLARRIREVAAEHDIPMIENKPLTRMLYDEIDVDQVIPVAHWEIVAEIISFVFDLR 357


>gi|228984854|ref|ZP_04145024.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090732|ref|ZP_04221965.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42]
 gi|228692674|gb|EEL46400.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-42]
 gi|228774804|gb|EEM23200.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 348

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYMMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|312884592|ref|ZP_07744296.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367904|gb|EFP95452.1| secretion system apparatus protein SsaU [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 346

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 158/341 (46%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+I+DA  +G    S E      +     Y L      + ++   + + + S
Sbjct: 3   EKTEKPTQKRIKDARKKGQVVKSVEIVTGFQMAIICGYFLVEGQGLMEAIWKMIDIAIHS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                    S +V    ++ L     +   L+L + F   S L+Q  P+L    +KPSF 
Sbjct: 63  INLPLKVAASSVVGAFVYIMLRFISGLAALLVLTVAF---SCLVQTGPLLATESLKPSFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++++    K I+S+ ++    K+ +K++++  +    L ++        +      +   
Sbjct: 120 KINVINNAKNIFSMKSIFELCKNMLKVLVLSLVFYYLLHQHVNMFQYLPTCGAECGVEVI 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ +    L+        D  + + Q   +LKMSK++ K E K++ GNP +K +++ 
Sbjct: 180 STLLKWLWTAFLICYVIFAAADYAFVHFQTMKQLKMSKEDTKQEYKETEGNPEVKQKRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R      +     ++T+++ NPTH A+ L Y   E   P+++ K Q  +A    ++A 
Sbjct: 240 LQRETANGSLATNVKKSTVVVRNPTHIAVCLYYNPDEAPVPIVLDKAQEHMALHTVELAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +H+IP+ E   LAR+L+ QV     IP   ++ VA+L+  +
Sbjct: 300 KHSIPLIENIPLARALYHQVEPGQLIPESLFEPVAELLRVV 340


>gi|218233750|ref|YP_002366454.1| flagellar biosynthesis protein FlhB [Bacillus cereus B4264]
 gi|218161707|gb|ACK61699.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           B4264]
          Length = 348

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIREIKFIFLSILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|163939579|ref|YP_001644463.1| flagellar biosynthesis protein FlhB [Bacillus weihenstephanensis
           KBAB4]
 gi|163861776|gb|ABY42835.1| type III secretion exporter [Bacillus weihenstephanensis KBAB4]
          Length = 348

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 177/348 (50%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +   K
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344


>gi|47565438|ref|ZP_00236479.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241]
 gi|47557428|gb|EAL15755.1| flagellar biosynthesis protein flhB [Bacillus cereus G9241]
          Length = 348

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|229178177|ref|ZP_04305548.1| Flagellar biosynthetic protein [Bacillus cereus 172560W]
 gi|228605307|gb|EEK62757.1| Flagellar biosynthetic protein [Bacillus cereus 172560W]
          Length = 348

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|206970587|ref|ZP_03231539.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH1134]
 gi|228952152|ref|ZP_04114244.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229043525|ref|ZP_04191234.1| Flagellar biosynthetic protein [Bacillus cereus AH676]
 gi|229069320|ref|ZP_04202610.1| Flagellar biosynthetic protein [Bacillus cereus F65185]
 gi|229109225|ref|ZP_04238824.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15]
 gi|229144382|ref|ZP_04272787.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24]
 gi|229149974|ref|ZP_04278200.1| Flagellar biosynthetic protein [Bacillus cereus m1550]
 gi|206734223|gb|EDZ51393.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH1134]
 gi|228633496|gb|EEK90099.1| Flagellar biosynthetic protein [Bacillus cereus m1550]
 gi|228639013|gb|EEK95438.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST24]
 gi|228674235|gb|EEL29480.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-15]
 gi|228713807|gb|EEL65692.1| Flagellar biosynthetic protein [Bacillus cereus F65185]
 gi|228725747|gb|EEL76995.1| Flagellar biosynthetic protein [Bacillus cereus AH676]
 gi|228807506|gb|EEM54033.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 348

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|324325787|gb|ADY21047.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 348

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYMMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|229160731|ref|ZP_04288723.1| Flagellar biosynthetic protein [Bacillus cereus R309803]
 gi|228622746|gb|EEK79580.1| Flagellar biosynthetic protein [Bacillus cereus R309803]
          Length = 348

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 180/348 (51%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +   K
Sbjct: 297 LAREQEIPMLENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTK 344


>gi|30261773|ref|NP_844150.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Ames]
 gi|49184607|ref|YP_027859.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Sterne]
 gi|49480930|ref|YP_035888.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143694|ref|YP_083139.1| flagellar biosynthesis protein FlhB [Bacillus cereus E33L]
 gi|65319050|ref|ZP_00392009.1| COG1377: Flagellar biosynthesis pathway, component FlhB [Bacillus
           anthracis str. A2012]
 gi|118477201|ref|YP_894352.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis str. Al
           Hakam]
 gi|165869563|ref|ZP_02214222.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0488]
 gi|167633408|ref|ZP_02391733.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0442]
 gi|167638766|ref|ZP_02397041.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0193]
 gi|170686249|ref|ZP_02877471.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0465]
 gi|170706530|ref|ZP_02896990.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0389]
 gi|177650578|ref|ZP_02933545.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0174]
 gi|190566254|ref|ZP_03019172.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033476|ref|ZP_03100888.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W]
 gi|218902883|ref|YP_002450717.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH820]
 gi|225863627|ref|YP_002749005.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB102]
 gi|227815458|ref|YP_002815467.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. CDC 684]
 gi|228914347|ref|ZP_04077962.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926805|ref|ZP_04089873.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933053|ref|ZP_04095916.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229183961|ref|ZP_04311176.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1]
 gi|229602417|ref|YP_002866162.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0248]
 gi|254683271|ref|ZP_05147132.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723854|ref|ZP_05185640.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. A1055]
 gi|254734624|ref|ZP_05192336.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741033|ref|ZP_05198721.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str. Kruger
           B]
 gi|254755276|ref|ZP_05207310.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Vollum]
 gi|254759812|ref|ZP_05211836.1| flagellar biosynthesis protein FlhB [Bacillus anthracis str.
           Australia 94]
 gi|291612214|ref|YP_003541028.1| flagellar biosynthetic protein FlhB [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|301053307|ref|YP_003791518.1| flagellar biosynthesis protein [Bacillus anthracis CI]
 gi|30256001|gb|AAP25636.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. Ames]
 gi|47502154|gb|AAT30830.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178534|gb|AAT53910.1| flagellar biosynthetic protein FlhB, putative [Bacillus anthracis
           str. Sterne]
 gi|49332486|gb|AAT63132.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977163|gb|AAU18713.1| flagellar biosynthetic protein [Bacillus cereus E33L]
 gi|118416426|gb|ABK84845.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164715003|gb|EDR20521.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0488]
 gi|167513230|gb|EDR88601.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0193]
 gi|167531446|gb|EDR94124.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0442]
 gi|170128628|gb|EDS97495.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0389]
 gi|170669946|gb|EDT20687.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0465]
 gi|172083722|gb|EDT68782.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0174]
 gi|190562389|gb|EDV16356.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993910|gb|EDX57866.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus W]
 gi|218539660|gb|ACK92058.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH820]
 gi|225789484|gb|ACO29701.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           03BB102]
 gi|227006512|gb|ACP16255.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. CDC 684]
 gi|228599486|gb|EEK57091.1| Flagellar biosynthetic protein [Bacillus cereus BGSC 6E1]
 gi|228826654|gb|EEM72425.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832918|gb|EEM78487.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845341|gb|EEM90377.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266825|gb|ACQ48462.1| putative flagellar biosynthetic protein FlhB [Bacillus anthracis
           str. A0248]
 gi|300375476|gb|ADK04380.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 348

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|219681611|ref|YP_002467997.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682168|ref|YP_002468552.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471297|ref|ZP_05635296.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621901|gb|ACL30057.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624454|gb|ACL30609.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085981|gb|ADP66063.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311087137|gb|ADP67217.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087673|gb|ADP67752.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 383

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 182/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           ++  + KTE P+  +I     +G    SRE S    +L   I L ++    + + +  + 
Sbjct: 3   HNTNEEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGFINLWWYRDLIVLNFSKIMS 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
                 +   L + ++++ +L  L         P L+  ++  I   ++     LN   +
Sbjct: 63  DSFLFESNDFLNNNNNLLKILMSL-KEILFSFFPFLISLLIVIIIPPILFSGISLNFRSL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
             +F +++   G KR++S   +V F K  +K+ +V  I    L  ++  +L  ++AN  S
Sbjct: 122 TLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVS 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L H +  +     +++L +  +   DI W    +Y KLKM++QE+KDE+K+  GNP IK
Sbjct: 182 SLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKEGNPNIK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   ++ +R +M+  T +A +IITNP HY++AL+Y +   +AP ++AKG    A K+
Sbjct: 242 MRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A +HNI I   PSLARSL++   I   IP   YKAVA+++  ++  +
Sbjct: 302 QNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351


>gi|152975183|ref|YP_001374700.1| flagellar biosynthesis protein FlhB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023935|gb|ABS21705.1| type III secretion exporter [Bacillus cytotoxicus NVH 391-98]
          Length = 348

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 181/348 (52%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++ +P  +L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIGKN-----ADTTEYFYLMGILLLKVSVPVFILVYAFHLFNYMIQVGFLFSSKIIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   ++L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDIVKSLFYMVLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKLIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ALRY +  + AP++VAKG++ +A  MR 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVALRYNKHVDAAPIVVAKGEDELALYMRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +   K
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQTK 344


>gi|110615403|gb|ABF04070.1| putative part of export apparatus for flagellar proteins [Shigella
           flexneri 5 str. 8401]
          Length = 358

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 166/311 (53%)

Query: 43  CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
             + +++F    +    S +           ++D + I+  +  L   A   ++P +   
Sbjct: 1   MGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGV 60

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
           ++  + S ++    V +   ++P F +++   GIKRI+S       +K+ +K ILVG++ 
Sbjct: 61  VLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVT 120

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
              L  ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL
Sbjct: 121 GFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKL 180

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           +MS+Q+I+DE KQS G+P +K R   + R+  R +MM    +A +I+ NPTHY++AL+Y 
Sbjct: 181 RMSRQDIRDEFKQSEGDPHVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYD 240

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + +  AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AV
Sbjct: 241 ENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAV 300

Query: 343 AQLIYKIYHKK 353
           A+++  ++  K
Sbjct: 301 AEVLAWVWQLK 311


>gi|315648120|ref|ZP_07901221.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
 gi|315276766|gb|EFU40109.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
          Length = 316

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 160/310 (51%)

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
           L ++L  F   +   T  L   +            +++ L     +    L+ P  +   
Sbjct: 3   LFFVLLIFGGYMRDHTVRLFTDVYINRLSMDVTKDNVMQLFGEYGIQILLLLAPLFISIF 62

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
           +  + S  +Q   +L    +K  F+++   +G K I+S+ +LV F+KS +K+ ++G ++ 
Sbjct: 63  VIALISNYLQVGFMLTGEPLKMKFEKLDPIKGFKNIFSMRSLVEFLKSVIKLTIIGYLVY 122

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
            +L      +    +  P +I +        +   I + +  L VLD  +  + +   ++
Sbjct: 123 STLWAAREGLSSLSTMGPDAIFHFVADITMSLGFKIAIGLIILAVLDYMYQRYDYEKNIR 182

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSKQ+IKDE K+  G+P+IK + +   R     +MM+    A +IITNPTH+A+A++Y  
Sbjct: 183 MSKQDIKDEYKKMEGDPLIKGKIRERQRRMALQRMMQEVPNADVIITNPTHFAVAIKYDG 242

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +  +AP ++AKGQ+ +A ++++IA EH I   E   LAR+L+++  I  +IP   ++AVA
Sbjct: 243 SMMEAPQIIAKGQDFMALRIKEIAKEHGIITMENKPLARALYQRSEIGDSIPGDLFQAVA 302

Query: 344 QLIYKIYHKK 353
           +++  +Y  K
Sbjct: 303 EVLAYVYKLK 312


>gi|239907023|ref|YP_002953764.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1]
 gi|239796889|dbj|BAH75878.1| flagellar biosynthetic protein FlhB [Desulfovibrio magneticus RS-1]
          Length = 357

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 172/351 (49%), Gaps = 6/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ + +   KTE  + K+   A  +G+ P S+E    + ++A L  + F        +  
Sbjct: 1   MARDPS---KTEKATPKRESKAREKGSVPRSQELPKLTVLMAGLFTVRFTLGNINEQLQE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L             +  L+  LS   + +++P LL+  +    +  +Q   V   
Sbjct: 58  VFRTFLGGRLDFT-ATTDDVAALMWSLSAKLAIMLLPLLLVMAVVAFVTQRLQVGEVWRP 116

Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              +P F  + +   G++R+  S   LVN  K       +  +  + L + +   L    
Sbjct: 117 KIFEPDFSNIVNPMRGLQRLLISAQTLVNLAKQTAMAFAISLVPYLILRKRFNEFLPLFY 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  +I          +++  LL +  + +LD+ ++   +   LKM+K E+KDE KQS+G
Sbjct: 177 QSVDNIALFLLDNGFDMVLYTLLPMFVIAILDVWYTRWDYAENLKMTKDEVKDEHKQSFG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K +QK      ++ +M++   +A ++ITNPTH A ALRY   E+ AP+L+AKG + 
Sbjct: 237 DPHVKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHIACALRYNPLESPAPMLLAKGADF 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +A+K++ IA EH +PI E   LA++L+K V I   IP   Y+AVA ++ ++
Sbjct: 297 MAEKIKDIAKEHKVPIRENKPLAQALYKNVEIGQVIPEDLYQAVASILAQL 347


>gi|228958050|ref|ZP_04119785.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801567|gb|EEM48449.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 348

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQ 342


>gi|229078951|ref|ZP_04211503.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2]
 gi|228704365|gb|EEL56799.1| Flagellar biosynthetic protein [Bacillus cereus Rock4-2]
          Length = 348

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|218663130|ref|ZP_03519060.1| flagellar biosynthesis protein FlhB [Rhizobium etli IE4771]
          Length = 360

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 136/351 (38%), Positives = 216/351 (61%), Gaps = 2/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++ 
Sbjct: 1   MADDD-KDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGRMSE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIPVLN 119
            L  +     Q K+E    ++ L   L  + + L+ P  +L M+FG     L +      
Sbjct: 60  TLRDIFEQPDQWKIETGPDVLALFVRLGWAIAALLAPAFILLMVFGHRIVDLPEPADACA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            N      +            +     +      K+++VG I+   L   YF  +D + +
Sbjct: 120 GNASDRRLRASRRPRAGHGSSACLASSSSESPLFKVVVVGVILFFVLRSEYFGSIDAMFS 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P +IL      +RK++I++L+  A + + D+ W+ H W+++LKM++ E+K+E KQ+ G+
Sbjct: 180 DPQTILVRMMTAMRKIIIVMLIATAIVAIADLFWTRHHWFTELKMTRHEVKEENKQAQGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY + ENDAPV++AKGQ+LI
Sbjct: 240 PFVKGRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           A K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 300 ALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 350


>gi|260767693|ref|ZP_05876628.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|260617202|gb|EEX42386.1| flagellar biosynthesis protein FlhB [Vibrio furnissii CIP 102972]
 gi|315179475|gb|ADT86389.1| flagellar biosynthesis protein FlhB [Vibrio furnissii NCTC 11218]
          Length = 339

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 162/315 (51%), Gaps = 1/315 (0%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
            ++   + L++F       + + +  L  + ++ ++ D++ +  +++   ++    ++  
Sbjct: 1   MLVVGALSLMWFGDALARGLYAAMGRLF-NLSREEIFDVNKLFDIVSGAMVNLILPLLLI 59

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
           L+   +  +           +     P F +++   G+KR++ + + V  +KS +K++LV
Sbjct: 60  LITLFVAALIGAAGVGGINFSAEAAMPKFSKMNPLSGLKRMFGLQSWVELLKSILKVLLV 119

Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
             +    +  +   +           ++HA   +   +++I   +  +  +D+ +   Q 
Sbjct: 120 AGVAFYLIEASKQDLFQLSLDTFPQNIFHALDILLNFVLLISCSLLVVVAIDVPFQIWQH 179

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
            ++LKM+KQE+KDE K + G P +K R + + R   + +MM    +A +IITNP H+++A
Sbjct: 180 ANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRMMADVPQADVIITNPDHFSVA 239

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           LRY Q  + APV+VAKG + +A K+R++A EH+I I   P LAR+L+    +   IP   
Sbjct: 240 LRYKQNTDRAPVVVAKGIDHLALKIREVAREHDIMIIPAPPLARALYHTTELEQEIPDGL 299

Query: 339 YKAVAQLIYKIYHKK 353
           + AVAQ++  ++  K
Sbjct: 300 FVAVAQVLAYVFQLK 314


>gi|120609156|ref|YP_968834.1| type III secretion system protein HrcU [Acidovorax citrulli
           AAC00-1]
 gi|58700626|gb|AAW81017.1| HrcU [Acidovorax citrulli]
 gi|120587620|gb|ABM31060.1| type III secretion protein, YscU/HrpY family [Acidovorax citrulli
           AAC00-1]
          Length = 352

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++    + + A L+ L          V   +   L  
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTALEQ 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 63  GVR--VHSTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGQIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            H+IP+   P LAR+L K +P++  IP   ++AV+ ++  +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340


>gi|224419239|ref|ZP_03657245.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
           98-5491]
 gi|253826957|ref|ZP_04869842.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142741|ref|ZP_07804934.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
           98-5491]
 gi|253510363|gb|EES89022.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131772|gb|EFR49389.1| flagellar biosynthesis protein FlhB [Helicobacter canadensis MIT
           98-5491]
          Length = 357

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 179/354 (50%), Gaps = 11/354 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYS 57
           M++    + KTEAPS++KIE A  EGN   S + + F  ++  L+ +     F+  G+ +
Sbjct: 1   MADE---EEKTEAPSARKIEKAREEGNVIKSPDVNAFLGLVVGLVLIFLCFNFWVDGLSA 57

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           +  +++ +      R     S+ + L   L      L+ P     M+ GI + + Q   +
Sbjct: 58  IFFEVYHIFNQDLTR-----SNAISLTISLVFKILYLLAPIFGALMLIGIVANISQSGFL 112

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           L    ++P  ++++   G+K I S+  L++      K++    I           +    
Sbjct: 113 LTTKAIQPKLQKLNFISGLKNIISLKKLLDGFLITFKVLTAFIIAFFVFLGFMKELTTVS 172

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                  +         ++ ++L F   + + D     +Q++  L+MSKQE+KDE K   
Sbjct: 173 LFPIGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQE 232

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+  +K + +S+     + +MM+    A +++TNPTHYA+ALRY  T+  AP ++AKG +
Sbjct: 233 GDQQVKGKIRSLMFQAAKKRMMQNIPNADVVVTNPTHYAVALRYDSTKERAPRVLAKGVD 292

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +A+++++IA E+ IPI E P LAR+L+K V I+  IP   Y+A+ +++ K+  
Sbjct: 293 FLAQRIKEIAKENEIPIIENPPLARALYKDVDIDKEIPETLYQAMVEILIKVQQ 346


>gi|74311773|ref|YP_310192.1| flagellar biosynthesis protein FlhB [Shigella sonnei Ss046]
 gi|73855250|gb|AAZ87957.1| putative part of export apparatus for flagellar proteins [Shigella
           sonnei Ss046]
          Length = 323

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 157/283 (55%)

Query: 71  QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130
                D + I+  +  L   A   ++P +   ++  + S ++    V +   ++P F ++
Sbjct: 9   HYIFNDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKL 68

Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
           +   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P + + +A  
Sbjct: 69  NPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPTTAMGNAMD 128

Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
            V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K R + + 
Sbjct: 129 LVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQ 188

Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
           R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R+I  E+
Sbjct: 189 RAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAEN 248

Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 249 NVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 291


>gi|311086556|gb|ADP66637.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 383

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 182/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           ++  + KTE P+  +I     +G    SRE S    +L   I L ++    + + +  + 
Sbjct: 3   HNTNEEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGSINLWWYRDLIVLNFSKIMS 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
                 +   L + ++++ +L  L         P L+  ++  I   ++     LN   +
Sbjct: 63  DSFLFESNDFLNNNNNLLKILMSL-KEILFSFFPFLISLLIVIIIPPILFSGISLNFRSL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
             +F +++   G KR++S   +V F K  +K+ +V  I    L  ++  +L  ++AN  S
Sbjct: 122 TLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVS 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L H +  +     +++L +  +   DI W    +Y KLKM++QE+KDE+K+  GNP IK
Sbjct: 182 SLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMKDELKEKEGNPNIK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   ++ +R +M+  T +A +IITNP HY++AL+Y +   +AP ++AKG    A K+
Sbjct: 242 MRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A +HNI I   PSLARSL++   I   IP   YKAVA+++  ++  +
Sbjct: 302 QNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351


>gi|229029449|ref|ZP_04185532.1| Flagellar biosynthetic protein [Bacillus cereus AH1271]
 gi|228731908|gb|EEL82807.1| Flagellar biosynthetic protein [Bacillus cereus AH1271]
          Length = 348

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|328958267|ref|YP_004375653.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4]
 gi|328674591|gb|AEB30637.1| flagellar biosynthesis protein FlhB [Carnobacterium sp. 17-4]
          Length = 355

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/354 (25%), Positives = 178/354 (50%), Gaps = 7/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGI-YSVT 59
           M+E D    KTE  S KK+ D   +G  P S + +   + +  ++   F  +  + YS+ 
Sbjct: 1   MAEKDG---KTEKASPKKLRDTRKKGEIPKSPDLTSAVTFIVFILTATFLGNYILKYSLL 57

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
              + L A  T   LE+  ++  +     +    L  P L +       + ++Q   + +
Sbjct: 58  YLQNYLSAEFTVNGLEN--NLADIGMKSIVFVLILAGPFLAIAFAAAFIASILQTGFLFS 115

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +K    +++   G K ++S   L   +K+  K+ LV  +   +L  + + +L+  + 
Sbjct: 116 AEPIKFKLSKINPISGFKNMFSKKTLFTMIKNVAKLTLVFWMAYKTLETSAYLILNSSNV 175

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               + +     V ++   + + +  L ++D  +  + +   LKMSKQE+KDE K+S G+
Sbjct: 176 GTEKLFFLMSDLVLELGTQLGVLLLILGLVDYIYQVYDYRKNLKMSKQELKDEFKESEGD 235

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK++++   R   +  + +    AT IITNPTH A+A+RY + +++ P++VAKG +  
Sbjct: 236 PQIKSQRRQRYRQLTKGAL-QDVETATAIITNPTHLAIAIRYEKGKDEVPIIVAKGADYQ 294

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R+ A   ++PI E   +AR+++K V I   +P   Y+A+A+++  +Y  +
Sbjct: 295 AAKIRERAKAFDVPIIENKPVARAMYKTVEIGQPVPVDLYQAIAEILALVYQME 348


>gi|326315337|ref|YP_004233009.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372173|gb|ADX44442.1| type III secretion protein, YscU/HrpY family [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 352

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++    + + A L+ L          V   +   L  
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 63  GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGKIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            H+IP+   P LAR+L K +P++  IP   ++AV+ ++  +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340


>gi|30019814|ref|NP_831445.1| flagellar biosynthesis protein FlhB [Bacillus cereus ATCC 14579]
 gi|229127096|ref|ZP_04256093.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4]
 gi|29895359|gb|AAP08646.1| Flagellar biosynthetic protein flhB [Bacillus cereus ATCC 14579]
 gi|228656212|gb|EEL12053.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-Cer4]
          Length = 348

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G I  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYIAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDEAIPEDLYVAVIEVMRYLIQ 342


>gi|163742549|ref|ZP_02149935.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           2.10]
 gi|161384134|gb|EDQ08517.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           2.10]
          Length = 359

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 163/349 (46%), Gaps = 3/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+   K+  P+ +K+E A  +G  P S + ++ +S L  +I +    +  +  + +
Sbjct: 1   MSDDDSD--KSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIIAIYVSGADVVEELGT 58

Query: 61  DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L   L    +   L         +  + ++     +P  ++ M   + S + QR  V  
Sbjct: 59  ILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRALVFA 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++P   ++S+    K  +  + L  F KS VK++L    + + L      M+   + 
Sbjct: 119 PSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGVYLNYRLPDMIASSAT 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               ++        + LI+ L+    + V+D  +   +   K  MS+QEI DE K++ G+
Sbjct: 179 GAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDESKEAEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  ++  A      + +   + A ++I NPTHYA+AL++ +    APV VAKG + +
Sbjct: 239 PHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPVCVAKGVDEV 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A  +R++A E+ +PI  +P  AR+L   V I   I    Y  VA  I  
Sbjct: 299 AAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAIRF 347


>gi|290893976|ref|ZP_06556951.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-071]
 gi|290556422|gb|EFD89961.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-071]
          Length = 348

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +    +   + +L+        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +KS + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKSLLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|332096673|gb|EGJ01664.1| flagellar biosynthetic protein FlhB [Shigella boydii 3594-74]
          Length = 343

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 167/311 (53%)

Query: 43  CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
             + +++F    +    S +           ++D + I+  +  L   A   ++P +   
Sbjct: 1   MGVCVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGV 60

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
           ++  + S ++    V +   ++P F +++   GIKR++S       +K+ +K ILVG++ 
Sbjct: 61  VLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 120

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
              L  ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL
Sbjct: 121 GFFLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKL 180

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           +MS+Q+I+DE KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y 
Sbjct: 181 RMSRQDIRDEFKQSEGDPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYD 240

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + +  AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AV
Sbjct: 241 ENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAV 300

Query: 343 AQLIYKIYHKK 353
           A+++  I+  K
Sbjct: 301 AEVLAWIWQLK 311


>gi|315281330|ref|ZP_07869978.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120]
 gi|313615028|gb|EFR88524.1| flagellar biosynthesis protein FlhB [Listeria marthii FSL S4-120]
          Length = 348

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +    +   + +L+        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPKLANMESYSLFYLM-----EFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  LV  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGLVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|299822255|ref|ZP_07054141.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601]
 gi|299815784|gb|EFI83022.1| flagellar biosynthesis protein FlhB [Listeria grayi DSM 20601]
          Length = 348

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 178/348 (51%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE P+ ++I+ A  EGN   S+E +   S+L     + FF    I ++ +    L
Sbjct: 2   AKDNKTEKPTPRRIKKAREEGNVAKSKELNNAFSLLIVAGMIFFFGKWWIGNMVTAFKAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L             + F+L        ++++P +++ ++ GI +Y +Q   + +   +KP
Sbjct: 62  LEQPPTLGNASSYSLFFIL-----QFGKVLLPVMVMVLVIGILNYAVQVGFLFSAKSIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +       +  T++ F   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSAVAYKGFQSHLQTLISFTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                  +   + + L I  + +LD  +  +++   L+MSKQ+IK+E+K S G P +K R
Sbjct: 177 RQILQLFKNEFLALFLIIVVIGLLDFLYQRYEYKKGLRMSKQDIKEEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +    AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R+
Sbjct: 237 QRSIARGLLQGAITKKMLDATFVVNNPTHISVVMRYDKGKDHAPKLLAKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA    IP+     +AR ++        I    Y AV +++ ++  K+
Sbjct: 297 IAETDGIPMITNRQVARMIYYSTNEEEYIQEDLYAAVIEIMKELMDKE 344


>gi|229096254|ref|ZP_04227227.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29]
 gi|229115209|ref|ZP_04244619.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3]
 gi|228668349|gb|EEL23781.1| Flagellar biosynthetic protein [Bacillus cereus Rock1-3]
 gi|228687214|gb|EEL41119.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-29]
          Length = 348

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKS-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|163738055|ref|ZP_02145471.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           BS107]
 gi|161388671|gb|EDQ13024.1| flagellar biosynthetic protein FlhB [Phaeobacter gallaeciensis
           BS107]
          Length = 359

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 163/349 (46%), Gaps = 3/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D+   K+  P+ +K+E A  +G  P S + ++ +S L  ++ +    +  +  + +
Sbjct: 1   MSDDDSD--KSYEPTPQKLEKARKKGEVPKSTDLNVAASYLGLIVAIYVSGADVVEELGT 58

Query: 61  DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L   L    +   L         +  + ++     +P  ++ M   + S + QR  V  
Sbjct: 59  ILMSFLDQPDRLADLFFGGAGTVPVGGIFMAVGTSSLPIFIVPMAAVLLSIIAQRALVFA 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++P   ++S+    K  +  + L  F KS VK++L    + I L      M+   + 
Sbjct: 119 PSKLEPKLSKISIISNAKNKFGRSGLFEFFKSTVKLVLYSVCMGIYLNYRLPDMIASSAT 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               ++        + LI+ L+    + V+D  +   +   K  MS+QEI DE K++ G+
Sbjct: 179 GAFVVVMMMAQLALEFLILALIIALGIGVIDAAFQQAEHNRKNMMSRQEIMDESKEAEGD 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  ++  A      + +   + A ++I NPTHYA+AL++ +    AP+ VAKG + +
Sbjct: 239 PHLKGARRQKAHEIAMGQGVADVAEADVVIVNPTHYAVALKWDRAPGQAPICVAKGVDEV 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A  +R++A E+ +PI  +P  AR+L   V I   I    Y  VA  I  
Sbjct: 299 AAVIREVANENGVPIHSDPPTARALHAAVDIGQEIHEEHYAPVAAAIRF 347


>gi|15616856|ref|NP_240069.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386798|sp|P57334|FLHB_BUCAI RecName: Full=Flagellar biosynthetic protein flhB
 gi|25322197|pir||C84958 flagellar biosynthetic protein flhB [imported] - Buchnera sp.
           (strain APS)
 gi|10038920|dbj|BAB12955.1| flagellar biosynthetic protein flhB [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 383

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/350 (28%), Positives = 182/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           ++  + KTE P+  +I     +G    SRE S    +L   I L ++    + + +  + 
Sbjct: 3   HNTNEEKTEHPTEHRIRKFRKKGKTRYSRELSSLFILLVGFINLWWYRDLIVLNFSKIMS 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
                 +   L + ++++ +L  L         P L+  ++  I   ++     LN   +
Sbjct: 63  DSFLFESNDFLNNNNNLLKILMSL-KEILFSFFPFLISLLIVIIIPPILFSGISLNFRSL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
             +F +++   G KR++S   +V F K  +K+ +V  I    L  ++  +L  ++AN  S
Sbjct: 122 TLNFSKLNPFHGFKRLFSFQIIVEFFKIILKLFIVSIISFWYLQFSFSEILFLVNANYVS 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L H +  +     +++L +  +   DI W    +Y KLKM++QE++DE+K+  GNP IK
Sbjct: 182 SLSHGYNIIFSCCFLVILGLFPIVFFDIAWQQFNYYKKLKMTRQEMRDELKEKEGNPNIK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   ++ +R +M+  T +A +IITNP HY++AL+Y +   +AP ++AKG    A K+
Sbjct: 242 MRIRQAMKAVMRRRMIINTPKADVIITNPIHYSVALKYDEKNMNAPKVIAKGIGEAAIKI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A +HNI I   PSLARSL++   I   IP   YKAVA+++  ++  +
Sbjct: 302 QNLALKHNISIISVPSLARSLYRYSEIGQYIPGPLYKAVAEVLAWVWKVR 351


>gi|229172415|ref|ZP_04299974.1| Flagellar biosynthetic protein [Bacillus cereus MM3]
 gi|228610886|gb|EEK68149.1| Flagellar biosynthetic protein [Bacillus cereus MM3]
          Length = 348

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++ +P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSVPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|89111188|dbj|BAE80277.1| HrcU [Acidovorax avenae subsp. avenae]
          Length = 352

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++    + + A L+ L          V   +   L  
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 63  GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            H+IP+   P LAR+L K +P++  IP   ++AV+ ++  +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340


>gi|229102368|ref|ZP_04233076.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28]
 gi|228681015|gb|EEL35184.1| Flagellar biosynthetic protein [Bacillus cereus Rock3-28]
          Length = 348

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  +  
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASF 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|167567199|ref|ZP_02360115.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           EO147]
          Length = 375

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 155/353 (43%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D+ D K+E  + +K++ A  +G  P SR+ S    +L  +  LL      +    +
Sbjct: 1   MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +LA  ++         + ++  + + A   VIP  +      I   L     V   
Sbjct: 60  LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASV------IAGSLFPGGWVFAS 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            + KP   R+S    + ++ S  +   F  S  K   +  ++           L   +  
Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAFAIIAVLWHVSASTLPAFLRLQALP 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H         + + L I     +D+ +    +    +M+KQE+KDE K + G P
Sbjct: 174 LPEAIAHGARLFVDGAMTLALVILAFASMDVPFQRFVFMRGQRMTKQEVKDEHKNNEGRP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            ++ R + + R   +  + +    A ++I NPTHYA+AL+Y     DAP ++AKG + +A
Sbjct: 234 EVRGRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGVDDMA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A  H + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 294 LVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346


>gi|171915731|ref|ZP_02931201.1| Type III secretory pathway, component EscU [Verrucomicrobium
           spinosum DSM 4136]
          Length = 347

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ KK+ DA  +G    S++    +  +A  + +   +   +     +L +L   
Sbjct: 3   EKNEPPTPKKLRDARKKGQVAKSQDVGTAALTIASFVTIGIMWPSMVEQ-AKELILLPVQ 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
              +  +  S  + L+  +      + +P L++ M+ G+ +   Q   +L    +KP  K
Sbjct: 62  YYDKPFQQGS--MELMLAIGRKVLLMSLPILMVVMVVGLAAGFGQIGFMLTFEPLKPELK 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  +  K+I+S+ +LV  +KS +K+ ++G II      +   +         S+L   
Sbjct: 120 KLNPMDKAKQIFSMKSLVELLKSTIKVGVIGIIIYYVTKASLDPLTRLPYGGEESVLTAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + +++    +   D  +  +Q   +LKMSK E+K E K+S GNP IK ++K 
Sbjct: 180 QPMIKALTMNVVMAYIIIAAADFFFQKYQHIKQLKMSKDEVKREYKESEGNPEIKGKRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +A+   +   M  T +A++++TNPTH A+A+ Y + ++  P ++AKG++ +A++M ++A 
Sbjct: 240 LAQEAAQSDTMGRTRKASVVVTNPTHLAIAIYYDENDDKMPRVLAKGEDHVARRMVEVAR 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           E  IP+ +   LAR+L++ V I+  +P    + +A+++  +   K
Sbjct: 300 EEGIPVMQHVPLARALYENVDIDRFVPSDLIEPMAEVLRWVQEWK 344


>gi|325567516|ref|ZP_08144183.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158949|gb|EGC71095.1| flagellar biosynthetic protein FlhB [Enterococcus casseliflavus
           ATCC 12755]
          Length = 355

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE PS+K++ DA   G  P ++E +   S+L     +L  +     S   
Sbjct: 1   MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                LA     +   ++ +  L     L    L  P  L+ +  G+ +   Q   + + 
Sbjct: 58  YFSQSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP FK+++   GIK+ +S+ +L+N  K+  K  ++  +           +L      
Sbjct: 117 KAIKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +       +++ + I +F+  L V+D G+  +     L MSKQE+K+E KQ  G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y  +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348


>gi|257866393|ref|ZP_05646046.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC30]
 gi|257873091|ref|ZP_05652744.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC10]
 gi|257800351|gb|EEV29379.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC30]
 gi|257807255|gb|EEV36077.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC10]
          Length = 355

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE PS+K++ DA   G  P ++E +   S+L     +L  +     S   
Sbjct: 1   MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                LA     +   ++ +  L     L    L  P  L+ +  G+ +   Q   + + 
Sbjct: 58  YFSRSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             VKP FK+++   GIK+ +S+ +L+N  K+  K  ++  +           +L      
Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +       +++ + I +F+  L V+D G+  +     L MSKQE+K+E KQ  G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y  +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348


>gi|167574623|ref|ZP_02367497.1| flagellar biosynthesis protein FlhB [Burkholderia oklahomensis
           C6786]
          Length = 375

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 156/353 (44%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D+ D K+E  + +K++ A  +G  P SR+ S    +L  +  LL      +    +
Sbjct: 1   MSDRDSGD-KSERATPQKLKQARKQGQIPRSRDLSTAIGVLISMKVLLALSPSWLADFRT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +LA  ++         + ++  + + A   VIP  +      I   L     V   
Sbjct: 60  LFAAVLADGSRDGASSAMMAIPVMLFVKMLAPFFVIPASV------IAGSLFPGGWVFAS 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            + KP   R+S    + ++ S  +   F  S  K   +  ++           L   +  
Sbjct: 114 ANFKPKLSRMSPFANLGKLVSARHYGTFALSAAKAFAIIAVLWHVSASTLPAFLRLQALP 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               + H         + + L I     +D+ +    +    +M+KQE+KDE K + G P
Sbjct: 174 LPEAIAHGARLFVDGAMTLALVILAFASMDVPFQRFVFMRGQRMTKQEVKDEHKNNEGRP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +++R + + R   +  + +    A ++I NPTHYA+AL+Y     DAP ++AKG + +A
Sbjct: 234 EVRSRIRQLQRQAAQRALSKTVPGADVVIVNPTHYAVALKYDAARADAPFVIAKGVDDMA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A  H + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 294 LVIRRLADAHGVEVVSLPPLARAIYYTSQVNQQIPSALYRAVAQVLTYVLQLK 346


>gi|300024611|ref|YP_003757222.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526432|gb|ADJ24901.1| type III secretion exporter [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 360

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 125/349 (35%), Positives = 213/349 (61%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D   ++TE  + KK+ DA N+GN P SRE   F  ++A L+ +          + S
Sbjct: 1   MSEQD-QQSRTEEATDKKLLDARNDGNVPSSREVPNFLYLMAALLVIAVLGQTFASHLGS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LLA+A   +L +   ++ L   +  +A+ +  P +L F   G+ + + Q  P+   
Sbjct: 60  LLVGLLANAGSIRLGNGGDVMLLFDVVGKAAAVVTAPIILAFGAAGVIASVAQNPPIPIA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P   R+S  +G+KR++S++ L  F+K  +++++V       L   +    + I  +
Sbjct: 120 KRVIPDISRLSPAKGLKRMFSLSGLFEFLKLSLRLVVVVVTSVAILMYMWHDFTNSIWND 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P +IL  +  +V  +LI + L   TL + D+  ++  W   L+M++QEIKDE KQ  G+P
Sbjct: 180 PSAILTLSQKSVVALLISLALMSFTLLIFDLPVAHVLWRRSLRMARQEIKDEQKQMEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K R++SIA++R R +M++  S+ATI+I NPTH+A+ALRY+++E  AP +VAKGQ+LIA
Sbjct: 240 LMKARRRSIAKARSRQRMLKGVSKATIVIANPTHFAVALRYVRSEGGAPRVVAKGQDLIA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            K+R+IA E+ IP+ E+ +LARSL+ +V ++  IP  FY+A+A+++ ++
Sbjct: 300 LKIRRIAEENAIPVIEDKALARSLYAKVEVDQMIPAEFYRAIAEILIRL 348


>gi|257876006|ref|ZP_05655659.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC20]
 gi|257810172|gb|EEV38992.1| flagellar biosynthetic protein flhB [Enterococcus casseliflavus
           EC20]
          Length = 355

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE PS+K++ DA   G  P ++E +   S+L     +L  +     S   
Sbjct: 1   MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLILSLWQFFAASFLP 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                LA     +   ++ +  L     L    L  P  L+ +  G+ +   Q   + + 
Sbjct: 58  YFSRSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             VKP FK+++   GIK+ +S+ +L+N  K+  K  ++  +           +L      
Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLSKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +       +++ + I +F+  L V+D G+  +     L MSKQE+K+E KQ  G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIVLAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y  +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348


>gi|257871304|ref|ZP_05650957.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2]
 gi|257805468|gb|EEV34290.1| flagellar biosynthetic protein flhB [Enterococcus gallinarum EG2]
          Length = 355

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE PS+K++ DA   G  P ++E +   S+L      L  +     S   
Sbjct: 1   MAEKDG---KTELPSAKRLRDARKRGEVPKTQELAAAVSLLVFSFLTLSLWQFFAASFLP 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                LA     +   ++ +  L     L    L  P  L+ +  G+ +   Q   + + 
Sbjct: 58  YFSRSLAQLADYQTS-LADLPKLGVQSILLLLLLCAPVFLVALGVGLITNYAQVGLLFSG 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             VKP FK+++   GIK+ +S+ +L+N  K+  K  ++  +           +L      
Sbjct: 117 KAVKPDFKKLNPISGIKQQFSLRSLMNLGKTLAKFGVIVYLCYQQFLAAVPVLLGLSEVG 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +       +++ + I +F+  L V+D G+  +     L MSKQE+K+E KQ  G+P
Sbjct: 177 LEKTILFMLLRAKELFLQISIFLIILAVVDYGYQRYSHRKNLMMSKQEVKEEFKQMEGDP 236

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K ++K+  R+  ++ +      AT++ITNPTH+A+A+RY  +    P ++AKG + +A
Sbjct: 237 QVKAQRKAKYRAMTQNAI-ANVKEATVLITNPTHFAIAIRYDASSEGVPRVLAKGADQLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++M+  A + NIP  E   +AR+L++QV     IP   Y+A+A++I  +Y  +
Sbjct: 296 QRMKAEALKENIPQIENREVARALYRQVEPGDLIPVEMYEAIAEIIALVYQLE 348


>gi|89111155|dbj|BAE80245.1| HrcU [Acidovorax avenae subsp. avenae]
          Length = 352

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 168/341 (49%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G    S++    + + A L+ L          V   +   L  
Sbjct: 3   EKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPLLYDRVRRIVTTALEQ 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +     ++ LL+ ++L    +    +++ ++  + + L Q   ++    + P F 
Sbjct: 63  GVR--VHGTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+K++++  +LV F KS +K ++ G ++   +T     ++  +   P +    A
Sbjct: 121 SLNPAEGLKKMFNARSLVEFSKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIA 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           +  + K+     L    +  LD G  +  +    +MSK ++K E K S G+P +K   KS
Sbjct: 181 WSALLKLFSFAFLVFLVIGPLDFGLQHWLFVRDQRMSKDDVKRENKDSEGDPHLKGHLKS 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +          E    AT+++TNPTHYA+ALRY       P++VAKG +  A  +R +A 
Sbjct: 241 LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA 300

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            H+IP+   P LAR+L K +P++  IP   ++AV+ ++  +
Sbjct: 301 LHHIPLIANPPLARALHK-LPLDQPIPEELFEAVSVVLRWV 340


>gi|206974845|ref|ZP_03235760.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           H3081.97]
 gi|217959252|ref|YP_002337800.1| flagellar biosynthesis protein FlhB [Bacillus cereus AH187]
 gi|206746864|gb|EDZ58256.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           H3081.97]
 gi|217068144|gb|ACJ82394.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           AH187]
          Length = 348

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 179/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342


>gi|302387776|ref|YP_003823598.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum
           WM1]
 gi|302198404|gb|ADL05975.1| flagellar biosynthetic protein FlhB [Clostridium saccharolyticum
           WM1]
          Length = 353

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 185/348 (53%), Gaps = 3/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  D   +G+  +S++  + +S+L   + L   F     ++ + +   
Sbjct: 2   AGDSKTEKATPKKRRDERKKGHVAVSKDVVMVASLLGIFMMLKLLFPFMYKTLRNYMIKY 61

Query: 66  LA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           ++ +     L D +   ++     ++  +   P LL  ++  + +  +Q   +   +++ 
Sbjct: 62  ISLAPAAETLSDYTTKAYM--DTVIAVLKACFPILLAAVLLAVIATGVQTRFLFTKSNLA 119

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++  +GIK I S+ +LV  +KS +KII++  I+   +  +   +   I       
Sbjct: 120 PKFDRLNPLQGIKNILSVKSLVELIKSLIKIIILILILYQIIKGDLRAVARTIDMELQDS 179

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
             +    + +++I + +    +   D  + +  +  +++MSKQE+K+E KQ+ GNP IK 
Sbjct: 180 AVYVLNAILEMIIKVSIVFLAIAGFDFFYQWWDFERQIRMSKQELKEEYKQTEGNPEIKG 239

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R ++I R R R +MM+A   A +I+ NPTHYA+ALRY   +++APVLVAKGQ+ +A ++ 
Sbjct: 240 RIRNIQRERARSRMMQAVPTADVIVRNPTHYAVALRYNIEKDNAPVLVAKGQDELALRIV 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            +  E+ + + E   LAR ++    + + IPP +Y  VA+++  +Y  
Sbjct: 300 AVGEENGVYVLENKPLARGIYAGTQVGAEIPPEYYGMVAEILVYVYRM 347


>gi|323165329|gb|EFZ51117.1| flagellar biosynthetic protein FlhB [Shigella sonnei 53G]
          Length = 319

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 157/283 (55%)

Query: 71  QRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV 130
                D + I+  +  L   A   ++P +   ++  + S ++    V +   ++P F ++
Sbjct: 5   HYIFNDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKL 64

Query: 131 SLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
           +   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P + + +A  
Sbjct: 65  NPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFYLWHHWPQMMRLMAESPTTAMGNAMD 124

Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
            V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K R + + 
Sbjct: 125 LVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQ 184

Query: 251 RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
           R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R+I  E+
Sbjct: 185 RAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAEN 244

Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 245 NVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 287


>gi|78776868|ref|YP_393183.1| flagellar biosynthesis protein FlhB [Sulfurimonas denitrificans DSM
           1251]
 gi|78497408|gb|ABB43948.1| Flagellar biosynthetic protein FlhB [Sulfurimonas denitrificans DSM
           1251]
          Length = 350

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 179/352 (50%), Gaps = 5/352 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+SKKIEDA  EGN P S++AS   ++   ++  L  F   +  + S
Sbjct: 1   MADD---AEKTEEPTSKKIEDARKEGNVPKSQDASGVMTLFVAILAFLMLFPYMLSHILS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                 +        D + ++ +          +++P  +   + G+ + + Q   +   
Sbjct: 58  IFKYYFSLIGMTI--DRALMLDIAIVTIKEIFLIIMPLSIAVAIAGVIAAISQFGFLFTT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K++   +G+K ++S+  L++ +K   K      I  +        +       
Sbjct: 116 KSITPDLKKLDPIKGMKNLFSMKKLIDGIKITFKSFTTLGIGFVFFFLFIMELPTVALFG 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         +  ++LL I    V+DI     Q++  LKMSKQEIKDE+K   G+P
Sbjct: 176 FTDQMIWLRDKAIIIAFVMLLIIFIFAVIDIVIVRKQYFDGLKMSKQEIKDEMKNMDGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK + + I     R +MM A   A ++ITNPTHYA+A++Y + ++ AP++VAKG + IA
Sbjct: 236 LIKGKIRQIQMEASRKRMMSAVPEADVVITNPTHYAVAIKYDEQKSHAPIVVAKGMDNIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           ++++KIA E+ + I + P LARSL+ +V ++  IP   + AVA+++  IY  
Sbjct: 296 QQIKKIARENGVHIVQNPPLARSLYAEVELDKPIPSELFGAVAEVLAYIYKM 347


>gi|304408584|ref|ZP_07390205.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS183]
 gi|307305412|ref|ZP_07585160.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           BA175]
 gi|304352405|gb|EFM16802.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS183]
 gi|306911715|gb|EFN42140.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           BA175]
          Length = 349

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 148/341 (43%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K++ +A N G    S E      +   L Y L+     + ++ + L  L  +
Sbjct: 3   EKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMA-LIDLTIN 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A    LE  +    ++   ++ A R +    L+ +   +   L+Q  PV     + PS  
Sbjct: 62  AINLPLETAAE--QIVGTFAMLALRFLGGLTLVLVFTIVVGNLVQTGPVWATESIMPSMN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++++    K++ S+ +L    K+ VK+ ++  +    L                  +   
Sbjct: 120 KLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCGEACGISVI 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +    L       + D  +  +    +LKMSK + K E K S GNP +K +++ 
Sbjct: 180 STMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R      +     +AT+++ NPTH A+ L Y + E   P ++ K ++ +A  +  +A 
Sbjct: 240 TQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  +PI E   LAR+LFK V     IP   ++ VA+L+  +
Sbjct: 300 KAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLV 340


>gi|229132597|ref|ZP_04261445.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196]
 gi|228650829|gb|EEL06816.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST196]
          Length = 348

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDRAIPEDLYVAVIEVMRYLIQ 342


>gi|16802721|ref|NP_464206.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes EGD-e]
 gi|46906930|ref|YP_013319.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091642|ref|ZP_00229438.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|47095244|ref|ZP_00232855.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|217965223|ref|YP_002350901.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|224498762|ref|ZP_03667111.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes Finland
           1988]
 gi|224502016|ref|ZP_03670323.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           R2-561]
 gi|226223310|ref|YP_002757417.1| flagellar biosynthetic protein flhB [Listeria monocytogenes
           Clip81459]
 gi|254824041|ref|ZP_05229042.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-194]
 gi|254829336|ref|ZP_05234023.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           N3-165]
 gi|254830330|ref|ZP_05234985.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 10403S]
 gi|254900085|ref|ZP_05260009.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes J0161]
 gi|254911362|ref|ZP_05261374.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932041|ref|ZP_05265400.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           HPB2262]
 gi|254935689|ref|ZP_05267386.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900]
 gi|254992440|ref|ZP_05274630.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-064]
 gi|255521624|ref|ZP_05388861.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-175]
 gi|284801009|ref|YP_003412874.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5578]
 gi|284994151|ref|YP_003415919.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5923]
 gi|16410068|emb|CAC98757.1| lmo0679 [Listeria monocytogenes EGD-e]
 gi|46880196|gb|AAT03496.1| putative flagellar biosynthetic protein flhB [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47016315|gb|EAL07237.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47019961|gb|EAL10698.1| flagellar biosynthetic protein flhB, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|217334493|gb|ACK40287.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|225875772|emb|CAS04475.1| Putative flagellar biosynthetic protein flhB [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258601748|gb|EEW15073.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           N3-165]
 gi|258608271|gb|EEW20879.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes F6900]
 gi|284056571|gb|ADB67512.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5578]
 gi|284059618|gb|ADB70557.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           08-5923]
 gi|293583594|gb|EFF95626.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes
           HPB2262]
 gi|293589298|gb|EFF97632.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293593270|gb|EFG01031.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-194]
 gi|307570218|emb|CAR83397.1| flagellar biosynthetic protein [Listeria monocytogenes L99]
 gi|328467248|gb|EGF38328.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 1816]
 gi|328475644|gb|EGF46393.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes 220]
 gi|332311104|gb|EGJ24199.1| Flagellar biosynthesis protein [Listeria monocytogenes str. Scott
           A]
          Length = 348

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +    +   + +L+        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|309388837|gb|ADO76717.1| flagellar biosynthetic protein FlhB [Halanaerobium praevalens DSM
           2228]
          Length = 352

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 174/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    KTE P+SK+ ++A  EGN    +E     ++LA  ++L F      + V +
Sbjct: 1   MAD-DGTGEKTEEPTSKRKKEAKEEGNVAKGKEIGQAITLLASFMFLYFLMQQIFFGVLN 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++     +        I     +L     S    + P +++    GI    +Q   +   
Sbjct: 60  EIQYYFKNLIIEPF-TIKMTFEILYDAFFSVIEKIYPIMIVTAAAGILVNFLQIGALFTT 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  K+V   +G K I+S+  +V  +KS  K+ L+  I    L  N       I+  
Sbjct: 119 KPLVPDLKKVDPIKGAKNIFSLKGVVELLKSLFKLALIAVIAYHFLMGNLDIFQKSINQG 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      + ++   +++ +  L +LD+ +   Q    LKMSK E+K E K+  G+P
Sbjct: 179 LEEALSAIAHLISRMAFAVIIALIILGILDLLYQRWQHNKDLKMSKYEVKQERKEMEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +I+ ++K   R    ++MM +   A ++ITNPTH A+AL Y   E +APV+VAKG++ +A
Sbjct: 239 MIQQQRKRRQREMSMNRMMSSVKDADVVITNPTHIAVALEYDLEEMEAPVIVAKGEDFVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+++ A E  + I E   LARSL K   I   +P   Y+AVA+++ +I+  +
Sbjct: 299 QKIKEKAREAEVKIIENKPLARSLNKMSEIGDQVPIELYQAVAEILAEIFKNR 351


>gi|289548904|ref|YP_003473892.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484]
 gi|289182521|gb|ADC89765.1| flagellar biosynthetic protein FlhB [Thermocrinis albus DSM 14484]
          Length = 349

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            +++TE  +  +      EG+   S +     S+L   + L        YS+ S  +   
Sbjct: 3   EESRTERATPYRRRKLREEGHVAKSTDLVASLSLLVITVSLYLVGPQLYYSLLSIFYT-- 60

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                     ++    LL       S  ++  ++L  +  I ++L Q   V  L  ++  
Sbjct: 61  -----APTLSVTEHPTLLRFFVEKVSPYILSLMVLSTLTVILAHLGQFGVVFTLKPLRFR 115

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           ++R++  EGIKR+ S+  L    K+ +KI ++   + + L    + +++ +    H  + 
Sbjct: 116 WERLNPVEGIKRLLSLTTLFELFKNTLKIGILLFTVYLFLRTEIYRLMESVLLPLHISIL 175

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  K+ I++      +  LD+ +    +  K++M+KQE+K+E KQ  GNP++K   
Sbjct: 176 DVMGLTLKLFIILGTLAIIMASLDLLYRRWDYERKIRMTKQEVKEEYKQHEGNPMVKGAI 235

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ-TENDAPVLVAKGQNLIAKKMRK 305
           +   R   + +M++   +AT++ITNPTH A+ALRY     + APV++AKG   IA+++  
Sbjct: 236 RKRMRQLAKGRMIKEVPKATVVITNPTHVAVALRYDPSGGDRAPVVLAKGVGQIAERIIN 295

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +A E+ +PI  +  LARSL++   +   IPP FY+AVA++I  I 
Sbjct: 296 VAREYGVPIVRKEELARSLYRWAEVGEEIPPRFYRAVAEIIAFIL 340


>gi|229017055|ref|ZP_04173974.1| Flagellar biosynthetic protein [Bacillus cereus AH1273]
 gi|229023236|ref|ZP_04179746.1| Flagellar biosynthetic protein [Bacillus cereus AH1272]
 gi|228738030|gb|EEL88516.1| Flagellar biosynthetic protein [Bacillus cereus AH1272]
 gi|228744228|gb|EEL94311.1| Flagellar biosynthetic protein [Bacillus cereus AH1273]
          Length = 348

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 179/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + +  L
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      + +   L  + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDVTEYLYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHALLQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342


>gi|296534146|ref|ZP_06896642.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
 gi|296265522|gb|EFH11651.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
          Length = 353

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 182/357 (50%), Gaps = 11/357 (3%)

Query: 1   MSEND----APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIY 56
           M+E +      + K   PS  K+  A   G  P++REA   +S+      L +F     +
Sbjct: 1   MAEKEGPGGDSEEKELDPSEAKLRKARESGEVPLAREAVQLASLCGGAFALSWFGPALGH 60

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
            +      L A + + + +        L+ +++ A+ L +    L     +   L Q   
Sbjct: 61  HMVEQGRSLFALSHEARWQ------LELSEMAVRAAPLALGVAGLAATGAVVVTLAQTRL 114

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           +++   + P+  ++S   G+KR++    LV F ++ +K++  G  +          +   
Sbjct: 115 LVSAKPLAPNPMKLSPLRGLKRMFGPQALVEFGRAMLKVVACGLAMWWVSDGITERLPQT 174

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
           ++     +   A   + ++L   LL    + ++D+GW   +   K++MS+QE+KDE+K+S
Sbjct: 175 LALPLEELGGLAAELIERLLRGALLAFTVVALVDLGWVRLRHMQKMRMSRQEMKDEMKES 234

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P I+ R++ IA  R R + M    +AT+I+TNPTHYA+AL Y +  + AP +VA+G 
Sbjct: 235 EGDPHIRGRRRQIALRRSRSRAMAEVPKATVIVTNPTHYAVALSYRRGIDAAPRVVARGV 294

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +A ++R+ A +H +P+   P LAR+L++ V   + IP   ++AVA+LI  ++  +
Sbjct: 295 DSMAARIRREAEKHGVPVLPNPPLARALYR-VEEGAQIPAEHFEAVAELIALVWKLR 350


>gi|242309640|ref|ZP_04808795.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT
           98-5489]
 gi|239523641|gb|EEQ63507.1| flagellar biosynthesis protein FlhB [Helicobacter pullorum MIT
           98-5489]
          Length = 354

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 176/351 (50%), Gaps = 6/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++    + KTEAPS++KIE A  EGN   S + + F  ++  L+ +   F+  +  +++
Sbjct: 1   MAD----EEKTEAPSARKIEKAREEGNVLKSPDVNAFLGLVVGLVLIFLCFNFWVDGISN 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +  S  Q      S  + +   L+     L+ P     ++ GI + + Q   +L  
Sbjct: 57  IFFQIYNSFNQDLTR--SDAISITISLTFQILYLLAPIFGALVLTGIVANISQSGFLLTT 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P  ++++   GIK I S+  L++      K++    I           +       
Sbjct: 115 KAIQPKLQKLNFITGIKNIISLKKLLDGFLITFKVMTAFIIAFFVFLGFMKELTTVSLFP 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         ++ ++L F   + + D     +Q++  L+MSKQE+KDE K   G+ 
Sbjct: 175 IGDQMIWLKDKALILIAILLAFFLVMAITDYLIKRYQYFKSLRMSKQEVKDEFKNQEGDQ 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + +S+     + +MM+    A +++TNPTHYA+ALRY  T+  AP ++AKG + +A
Sbjct: 235 QIKGKIRSLMFQAAKKRMMQNIPSADVVVTNPTHYAVALRYDSTKERAPRVLAKGVDFLA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++++ IA EH IPI E P LAR+L+K V I+  IP   Y+A+ +++ K+  
Sbjct: 295 QRIKDIAKEHEIPIIENPPLARALYKDVDIDKEIPETLYQAMIEVLIKVQQ 345


>gi|116872068|ref|YP_848849.1| flagellar biosynthesis protein FlhB [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740946|emb|CAK20066.1| flagellar biosynthetic protein FlhB, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 348

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +    +   + +L+        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYAVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|161503484|ref|YP_001570596.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864831|gb|ABX21454.1| hypothetical protein SARI_01560 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 351

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 152/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  F     I  +   ++  L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALFLYFHFLTEKVILRIIELINFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ + + L     S    +  G+++  +  +    +Q   V+    +     
Sbjct: 63  INKPFSYALTQLSYSLVDSLSSVILFLGAGIIISTVASV---FLQVGVVIASKAIGFKSD 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I+         T            L   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSTLKVIILSLILAFFFYYYVSTFRALPYCGLACALPVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           F  ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 FCLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVDLARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|39545582|gb|AAR26329.1| AscU [Aeromonas hydrophila]
          Length = 352

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 3/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + IL+ +  L+      +  +   +   L
Sbjct: 2   SGEKTELPTPKKLRDARKKGQVVKSKEVVSTAIILSLIGMLMAMSDYYLEHLGKLM---L 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              +   L     +  +L +L    + L IP L + ++  + S+  Q   +L+   +KP 
Sbjct: 59  IPESHLNLPFTQALNHVLENLMQEMAYLCIPLLGVSVLVVLISHFAQYGFLLSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG K+I+SI +L+ F+KS +K+ L+  ++ I++  N   +L         I  
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWITIEGNLQALLQLPGCGMSCIPP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P IK+++
Sbjct: 179 VLGGMLSQLMAVCAMGFVVIAIADYAFEHYQHTKQLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E  IP+ +   LAR+L++   IN+ IP    +A A+++  +   +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVLRWLEQWR 345


>gi|332159965|ref|YP_004296542.1| type III secretion protein, YscU/HrpY family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607483|emb|CBY28981.1| type III secretion inner membrane protein
           (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar
           export components) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664195|gb|ADZ40839.1| Type III secretion protein, YscU/HrpY family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862410|emb|CBX72569.1| secretion system apparatus protein ssaU [Yersinia enterocolitica
           W22703]
          Length = 358

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 152/342 (44%), Gaps = 5/342 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS   +   K E P++K++ +A  +G    S E +    ++  + Y     +  I  + +
Sbjct: 1   MSGESS--EKNEKPTAKRLREAREKGQVIKSVEITSGMQLVVLVAYFFLVGNTIIDQIGA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +    Q     ++ I    T + +    ++   L+L     I + + Q  P+   
Sbjct: 59  LIRSTINQLQQPFTFALARIGSECTAVLIHIVGILGGALIL---MTIIAGIAQVGPLFAT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V    + ++  +  K+++S+ +L   +KS +K+ ++  I    L +   +        
Sbjct: 116 KAVAFKSEHINPIDNAKQLFSLRSLFELIKSLLKVGVLTLIFGYLLAQYATSFGYLAYCG 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +  +L  ++      ++LD  + ++    +LKMS +E+K E K S G+P
Sbjct: 176 SSCAIPVFGTLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK +++ + +        +   R+T I+ NPTH+A+ L Y   +   P+++ KG+   A
Sbjct: 236 HIKQKRRQLQQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGERA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
             + K+A +  IPI E  +LAR+L + V     IP   ++ V
Sbjct: 296 ALIIKLAEQQGIPIVENIALARALHRDVVCGDTIPETLFEPV 337


>gi|196039022|ref|ZP_03106329.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           NVH0597-99]
 gi|196030167|gb|EDX68767.1| putative flagellar biosynthetic protein FlhB [Bacillus cereus
           NVH0597-99]
          Length = 348

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342


>gi|296502370|ref|YP_003664070.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171]
 gi|296323422|gb|ADH06350.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis BMB171]
          Length = 348

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIREIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342


>gi|254475662|ref|ZP_05089048.1| type III secretion exporter [Ruegeria sp. R11]
 gi|214029905|gb|EEB70740.1| type III secretion exporter [Ruegeria sp. R11]
          Length = 360

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 2/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  D K+  P+ +KI  A  +G+ P S + S+ ++ L  +I +       +  + S
Sbjct: 1   MSQDDDSD-KSYEPTPEKIRKAREKGDVPKSTDLSVAAAYLGLIIVVYTSGEDMVRDMGS 59

Query: 61  DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            +   L    +  +L    +    +  L  S +  + P  ++     I S + QR  V  
Sbjct: 60  LMMSFLDQPDRHAELFFSDNGTPPVGGLLKSVASAMAPMFIIPAAAVILSLVGQRALVFA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++P   R+S+    K  + +  L  F KS VK+IL    + I L      M+   + 
Sbjct: 120 PSKLEPKLSRISIMSNAKNKFGMTGLFEFAKSTVKLILFSVCMGIYLNYRLPDMIASAAT 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
               ++        + +++ L+    + V+D  +    +  K  MS++EI DE+K S G+
Sbjct: 180 GAFVVVTMLGQLAIEFMVLALIIALAVGVVDAAFQQADFTRKNMMSRKEIMDEMKNSEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  ++  A+       ++  + A ++I NPTHYA+AL++ +    APV V+KG + +
Sbjct: 240 PHMKGARRQKAQQIAMSAGVQDVATADVVIVNPTHYAVALKWDRQPGQAPVCVSKGVDEV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A  +R++A E+ +PI  +P  AR+L   V I   I    Y  VA  I  
Sbjct: 300 AAIIREVANENGVPIHSDPPTARALHAAVEIGDEIHEEHYAPVAAAIRF 348


>gi|222095392|ref|YP_002529452.1| flagellar biosynthesis protein flhb [Bacillus cereus Q1]
 gi|228945372|ref|ZP_04107727.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|221239450|gb|ACM12160.1| flagellar biosynthetic protein [Bacillus cereus Q1]
 gi|228814344|gb|EEM60610.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 348

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYMMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 342


>gi|83647785|ref|YP_436220.1| type III secretory pathway subunit EscU [Hahella chejuensis KCTC
           2396]
 gi|83635828|gb|ABC31795.1| Type III secretory pathway, component EscU [Hahella chejuensis KCTC
           2396]
          Length = 351

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S++    ++I A  + LL      +  ++  + +  
Sbjct: 2   SDEKTEKPTPKKLRDARKKGQVAHSKDVVSTATICAMFLLLLATSDTYLSHLSILIELPA 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               +  LE +  +V    ++      L +  + + M   I +  +Q   +  +  +KP 
Sbjct: 62  QYMDRPFLEALPMVV---DNVIYELIYLTLMPVGVVMASAILANFLQVGALFAVESLKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG K+I+ + N + F+KS +K+ ++  ++ + + +N              I  
Sbjct: 119 LKKLNPVEGFKKIFCVKNFIEFIKSLIKVGVLSYLVYMLIKDNLNDSARLHYCEVECIPD 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++++++   +    L   D      Q+  + KMSK E+K E KQ  G+P IK ++
Sbjct: 179 FVGTLLKQLILYSAITFIALAAADFFIQKQQFIKQQKMSKDEVKREYKQMEGSPEIKGKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K I R  +   +     + + I+TNPTH A+ + Y +   D P ++ KG + +AK +RKI
Sbjct: 239 KQIHREMMNTSIPAQVKKCSAIVTNPTHLAVGIYYEKGVEDVPKVMVKGADQMAKVIRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  IP+ E   LAR L+K+  +N  +PP  ++AVA ++  +
Sbjct: 299 AEEEGIPMMENVPLARGLWKRAQVNDYVPPDLFEAVAAVLQWV 341


>gi|74101643|gb|AAZ99733.1| FlhBL [Aeromonas hydrophila]
          Length = 378

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+N A D KTE  SS+K+  A  EG    S+E S    +L   + +  +  P      +
Sbjct: 1   MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQ-WMVPSFGHFFA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L         +   D   ++       LS   +++P      +  +   ++    VL  
Sbjct: 59  ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + PS ++++  +G+KR++S ++L+  +KS +KI+L+G+ + + L   +  ++      
Sbjct: 119 KKLLPSAEKLNPLKGLKRMFSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + +  A   + +  I++      + VLD+ +       +L+M+KQE+KDE K S G P
Sbjct: 179 PQAAMEQALRILSQAFILLGSVQMLIAVLDVPYQRWSLNKQLRMTKQEVKDEHKNSEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +     R ++ +   +A +II NPTHYA+A++Y     +AP ++AKG + +A
Sbjct: 239 EIKAKIRQVQGMLARARIEQRVPQADVIIVNPTHYAVAIKYDPERANAPYVIAKGVDGMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R++A +H+  +   P L R+++    ++  +P   Y AVA ++  +   +
Sbjct: 299 ERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVAYVLNHVLQLR 351


>gi|42525573|ref|NP_970671.1| flagellar biosynthesis protein FlhB [Treponema denticola ATCC
           35405]
 gi|13122809|gb|AAK12645.1|AF232219_4 FlhB [Treponema denticola]
 gi|41815584|gb|AAS10552.1| flagellar biosynthetic protein FlhB [Treponema denticola ATCC
           35405]
          Length = 390

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 174/352 (49%), Gaps = 8/352 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+  KI  A  EG    S++ +    +L  +I L+        S+   +   
Sbjct: 33  EDEGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIMGPYIFKSLMQVIAFF 92

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124
               T   + + +          L   + V P   + ++ G+   +IQ    + +   ++
Sbjct: 93  FERCTTEDVVNGT----WFRIFVLYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQ 148

Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P FKRV+       KR ++S   L N  KS  K++++G I  + +  N   M+  + ++ 
Sbjct: 149 PDFKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDF 208

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + +     T  ++L+   + +  L++ D  +   Q+   LKMSK E+ DE K+  G+P+
Sbjct: 209 PNSIIFIAKTAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPM 268

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K +     ++ ++   ++    A ++ITNPTHYA+AL++ Q    AP++++KG +  A+
Sbjct: 269 VKAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGIMPAPMVISKGVDATAQ 328

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++IA E+NIP  E   LAR+L+  V +   IP  +Y++++ +  KIY  K
Sbjct: 329 NIKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYQSLSIIFLKIYSMK 380


>gi|163781850|ref|ZP_02176850.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883070|gb|EDP76574.1| flagellar biosynthetic protein FlhB [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 102/349 (29%), Positives = 184/349 (52%), Gaps = 4/349 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A +NKTE  +  +      EGN   S E +   S+L   + + F    G       +  L
Sbjct: 2   AQENKTEKATPYRRRKLKQEGNVAKSVEIASSLSVLISSLIIFFT---GALIFKEVVAFL 58

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +A +  R  E        +     S  +L++P  ++ ++  IG+++ Q   +  L  ++ 
Sbjct: 59  IAISGLRPAEFSILAGTTIKDSFTSIVKLLVPFFVVTILVVIGAHVAQFGFIFTLKPLQF 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            ++R++  EGIK++ SI  L    K+ +K  L+  I    L  +   +L+         +
Sbjct: 119 KWERLNPVEGIKKMVSITTLFELSKNTLKASLLFGIALFILKGSVSLILNSAQMPLLEGV 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 + KV++++ +    + +LD  +    +  +++MSKQE+K+E KQ  G P +K +
Sbjct: 179 NFLIDLLIKVVLILGVIAFLIALLDFAYKKWDYERRIRMSKQEVKEEFKQLEGQPEVKAK 238

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            K+  R   R +MM    +A+++ITNPTHYA+ALRY   ++ APV+VAKG+  +A+++ K
Sbjct: 239 VKARMREMARGRMMAEVPKASVVITNPTHYAIALRYDAEKDRAPVVVAKGKGTLAERIIK 298

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI-YHKK 353
           +A E+ +P+  +P LAR+++  V +   IPP FY+AVA++I  I + KK
Sbjct: 299 VAEENEVPVIRKPELARAMYSAVDVGDEIPPEFYRAVAEIIAFITFRKK 347


>gi|312602783|ref|YP_004022628.1| type III secretion inner membrane protein SctU [Burkholderia
           rhizoxinica HKI 454]
 gi|306431586|emb|CBK52138.1| type III secretion inner membrane protein SctU [Burkholderia
           rhizoxinica HKI 454]
 gi|312170097|emb|CBW77109.1| type III secretion inner membrane protein SctU [Burkholderia
           rhizoxinica HKI 454]
          Length = 360

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ K++ DA  +G    S + +  + + A +  L+   S    +  + +H  L
Sbjct: 2   SDEKTEEPTEKRLRDARRDGQVAKSTDLTDAAVMCASIAVLVAAASMFTDAFRALIHTTL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              T  +   +  +V     L   +  +++P +    +    +   Q    ++   V P+
Sbjct: 62  DFVTTNRSNTM--LVASAFKLGRQSLTIIVPCVAATALCAFAALFAQVGFQISTKPVTPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              V+   GIKRI+S+  +V+  KS +K  LV  ++  ++      +   +      +  
Sbjct: 120 PTAVNPASGIKRIFSLRTVVDMTKSLLKAALVACVMWYTIRGLIPLIATSLYQPLPELSR 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  + K+     L    +  LD       +  +++MSK EIK E KQ  G+P +K  +
Sbjct: 180 LFWTVLLKLFSAAALVFIVIAALDFKLQKFLFTRQMRMSKDEIKREYKQQEGDPQLKGER 239

Query: 247 KSIARSRIRHKMME-ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K IAR   +          A  +I NPTHYA+A+RY   E   PV++AKG +  A ++R+
Sbjct: 240 KRIAREWAQEAPPRLRVGLANALIVNPTHYAVAIRYAPEECPLPVVIAKGHDESAAELRR 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A +  +PI   P +AR+L + V I+  IP   ++AVA ++  +
Sbjct: 300 YAAQARVPIIGNPPIARALHR-VKIDEPIPEALFEAVAAILRWV 342


>gi|303248000|ref|ZP_07334266.1| type III secretion exporter [Desulfovibrio fructosovorans JJ]
 gi|302490557|gb|EFL50462.1| type III secretion exporter [Desulfovibrio fructosovorans JJ]
          Length = 357

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 170/355 (47%), Gaps = 6/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ + +   KTE  + K+ + A  +G+   S+E    + + A L  +          +  
Sbjct: 1   MARDPS---KTEQATQKRRDKAREKGSVARSQELPKLTVLFAGLFVIRLTIRSLGDDLKE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              + L      +   +  +  L   LS   + +++P L++  +    +  IQ   + + 
Sbjct: 58  VFTLFLGQRLHFE-ATVDAVNALFWMLSGKLAMMLLPLLVVIAIIAFITQRIQVGSIWHS 116

Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              +P F  + +    ++++  +   LV   K       +     + +   +   L    
Sbjct: 117 KLFEPDFSNLFNPIAALQKLLINPKTLVQLGKQVAMASAIAVAPYLIIKNKFNEFLPLFY 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +  S+          +++  L  +  + VLD+ ++   +   LKM+K E+KDE KQ+ G
Sbjct: 177 QSTQSLTTFLLENGFTMVLYTLFPMVLIAVLDVWYTRWDYEENLKMTKDEVKDETKQALG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K +Q+      ++ +M++   +A ++ITNPTH A ALRY   E+ AP+L+AKG + 
Sbjct: 237 DPVVKQQQRRKMMEVMQRRMLQDVPKADVVITNPTHLACALRYDPKESPAPLLLAKGADH 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A+K+++IA E+ IPI E   LA++L+K V I   IP   Y+AVA ++ ++   K
Sbjct: 297 LAEKIKEIARENRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQLDKFK 351


>gi|152965635|ref|YP_001361419.1| type III secretion exporter [Kineococcus radiotolerans SRS30216]
 gi|151360152|gb|ABS03155.1| type III secretion exporter [Kineococcus radiotolerans SRS30216]
          Length = 360

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 168/347 (48%), Gaps = 4/347 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+++A +EGN P SR+ + + S  A  + +      G   +      + 
Sbjct: 2   SGEKTEKPTPKKLKEARDEGNIPFSRDVAAWLSTGAGAVTIPHTIESGQVLLRKAFAGVG 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A A   +    +  +  L         ++ P     +   + S  +Q         +KP 
Sbjct: 62  AVAADPE---PARALAALAATFAGIPGVLGPLAAATVFAVVVSGGVQGTLRPAPKKLKPK 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G K+ +    L    KS +K +++GT++ + +       +        S+L 
Sbjct: 119 FSNLNPVNGFKQHWGPQALWEGTKSLLKTVVIGTVMWLVVKNLVPQFVGSGLMPLASVLT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V K++ + +L    +   D   SY +   KL+MSKQ+IK E K + G+P++K   
Sbjct: 179 LTKGAVVKIVAVTVLLGLIIAAGDYAMSYRRTMKKLRMSKQDIKMEHKNAEGDPLLKGAI 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +S   +  R++MM   + A +++ NPTH A+ALRY      AP +VAKG   IA K+R+ 
Sbjct: 239 RSKQMAMSRNRMMSDVASADVVLVNPTHIAVALRYEPG-TGAPKVVAKGAGAIASKIREK 297

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E+++P+ ++  LAR+++K   I   IPP F+ AVA+++  + + +
Sbjct: 298 AKENDVPLVKDVQLARTMYKSCKIGQEIPPEFFAAVAKVLAFVMNLR 344


>gi|238762378|ref|ZP_04623349.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638]
 gi|238699363|gb|EEP92109.1| Flagellar assembly protein [Yersinia kristensenii ATCC 33638]
          Length = 377

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 173/353 (49%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS       K+E P+S K+  A  +G+ P S++ ++ + ++  L+ L  F       +  
Sbjct: 1   MS--SNSGEKSEKPTSGKLLKARKKGDIPRSKDVTMAAGLVTSLVTLTLFLPYYKELIGE 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +  +A +  ++D + +  LL        + ++  L    +  I + L+        
Sbjct: 59  SFLAVGRTAGR--IDDPAALEQLLLTNLSIFFKFLL-TLTPIPLVSILATLVPSGWNFTP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P FK++S   GIK+I+S +N    +K   K  +V   + + +  +   +L   +  
Sbjct: 116 VKLIPDFKKLSPLAGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVNSSLVDLLRLQALP 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +   F     +L+  +  I     +DI  S + +  K+KM+KQE+K E K + GNP
Sbjct: 176 LQEAITEGFILYHGILVYFIAIIVIFAAIDIPLSKYLFTKKMKMTKQEVKLEHKSNDGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IKNR + + R     ++ +    A +IITNPTH+++AL+Y   +  AP ++AKG++ IA
Sbjct: 236 EIKNRVRQLQRQFAMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R IA  ++I I E P LAR+++    +N  +P   Y+A+AQ++  +   K
Sbjct: 296 LYIRTIAKNNDIEIVEFPPLARAIYHTTKVNQQVPIQLYRAIAQVLTYVMQVK 348


>gi|82543640|ref|YP_407587.1| flagellar biosynthesis protein FlhB [Shigella boydii Sb227]
 gi|81245051|gb|ABB65759.1| putative part of export apparatus for flagellar proteins [Shigella
           boydii Sb227]
          Length = 343

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 166/311 (53%)

Query: 43  CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
             + +++F    +    S +           ++D + I+  +  L   A   ++P +   
Sbjct: 1   MGVCVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGV 60

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
           ++  + S ++    V +   ++P F +++   GIKR++S       +K+ +K ILVG++ 
Sbjct: 61  VLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 120

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
              L  ++  M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL
Sbjct: 121 GFFLWHHWPQMMRLLAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKL 180

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           +MS+Q+I+DE KQS G P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y 
Sbjct: 181 RMSRQDIRDEFKQSEGEPDVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYD 240

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           + +  AP +VAKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AV
Sbjct: 241 ENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAV 300

Query: 343 AQLIYKIYHKK 353
           A+++  I+  K
Sbjct: 301 AEVLAWIWQLK 311


>gi|167568047|ref|ZP_02360963.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis
           EO147]
          Length = 377

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 157/346 (45%), Gaps = 5/346 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S E +    +   L Y LF  +     +      L+  
Sbjct: 3   EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGA----HLLQAFEALVDV 58

Query: 69  ATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +     +D +      T  L     R  +   +L +   + + + Q  P+L +  +KPS 
Sbjct: 59  SIAVVNDDFAAATARWTSALGAVLIRFTLGMAVLVIAMTVVAAIAQIGPLLAVEALKPSL 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++    +K+++S+ +L  F KS  K+ ++  I    + +   ++      +    L  
Sbjct: 119 DKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIFFYLIRQYAPSLQFLPLCSVECGLAV 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +   +  +   ++ F     + D  +  +    +L MS ++IK E K S GNP IK++++
Sbjct: 179 STQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKHKRR 238

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            I R      +    +++T+++ NPTH A+ L Y + E   P ++  G++ +A  +  +A
Sbjct: 239 EIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIEIGRDKLALHIVALA 298

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
               +P+ E   LAR+L  ++ +   IPP  ++ VA L+      +
Sbjct: 299 ERERVPVVENVPLARALANRLDVGQRIPPDLFEPVAHLLRVAMQLR 344


>gi|229011062|ref|ZP_04168256.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048]
 gi|228750234|gb|EEM00066.1| Flagellar biosynthetic protein [Bacillus mycoides DSM 2048]
          Length = 348

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 176/348 (50%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+  +K +
Sbjct: 177 TEIISQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDQQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +   K
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344


>gi|229058418|ref|ZP_04196802.1| Flagellar biosynthetic protein [Bacillus cereus AH603]
 gi|228719927|gb|EEL71517.1| Flagellar biosynthetic protein [Bacillus cereus AH603]
          Length = 348

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 177/348 (50%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +   K
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344


>gi|228907402|ref|ZP_04071260.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200]
 gi|228938882|ref|ZP_04101482.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228964753|ref|ZP_04125860.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971763|ref|ZP_04132384.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978372|ref|ZP_04138749.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407]
 gi|228781389|gb|EEM29590.1| Flagellar biosynthetic protein [Bacillus thuringiensis Bt407]
 gi|228787853|gb|EEM35811.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228795003|gb|EEM42502.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228820731|gb|EEM66756.1| Flagellar biosynthetic protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228852263|gb|EEM97059.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 200]
 gi|326939382|gb|AEA15278.1| flagellar biosynthesis protein FlhB [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 348

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 5/346 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 342


>gi|126174201|ref|YP_001050350.1| secretion system apparatus protein SsaU [Shewanella baltica OS155]
 gi|125997406|gb|ABN61481.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS155]
          Length = 349

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 147/341 (43%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K++ +A N G    S E      +   L Y L+     + ++ + L  L  +
Sbjct: 3   EKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMA-LIDLTIN 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A    LE  +    ++   ++ A R +    L+ +   +    +Q  PV     + PS  
Sbjct: 62  AINLPLETAAE--QIVGTFAMLALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++++    K++ S+ +L    K+ VK+ ++  +    L                  +   
Sbjct: 120 KLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCEEACGISVI 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +    L       + D  +  +    +LKMSK + K E K S GNP +K +++ 
Sbjct: 180 STMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R      +     +AT+++ NPTH A+ L Y + E   P ++ K ++ +A  +  +A 
Sbjct: 240 TQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  +PI E   LAR+LFK V     IP   ++ VA+L+  +
Sbjct: 300 KAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLV 340


>gi|159045796|ref|YP_001534590.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12]
 gi|157913556|gb|ABV94989.1| flagellar biosynthesis protein FlhB [Dinoroseobacter shibae DFL 12]
          Length = 362

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 164/349 (46%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+++PD+K    S KK+ DA  +G    S +     S    ++ L+F  +  +    +
Sbjct: 1   MSEDESPDDKPFEASEKKLLDARKKGELVKSTDLIATGSYGGLILGLVFAGAGTLTISAA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            +  LL  A     E  +     ++  L L     +     L M+  I S ++QR  V  
Sbjct: 61  TMQGLLREADTLAPELFAGGASSISLTLILGTVGALSLWFFLPMLGAIASLVLQRALVFA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              ++P   R+S+    K  +    L  F+KS  K+++   ++ +       TM+   + 
Sbjct: 121 PTKLEPKLNRISILSNAKNKFGREGLFEFLKSTFKLVVFSILLGLLFMYELDTMISLAAQ 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              +I+   F+ + + L ++ L    +  +D  W   Q   K +MS+QE+ DE K + G+
Sbjct: 181 PVSAIIGFVFYLLIEFLALVFLATLLIGGVDYIWQRAQHLRKNRMSRQEVVDETKSAEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P  K  ++  A      +M+     A++++ NPTHYA+AL++ +    AP++VA G + +
Sbjct: 241 PHSKQYRRQRAIEIATQQMLADVPDASVVVVNPTHYAVALKWDRFSPTAPIVVASGVDHV 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A  +R+ A E  +PI  +P  AR+L+    +   IP   +KAVA  I  
Sbjct: 301 AAAIRQRAQEAGVPIHRDPPTARALYATCKLGQEIPRAQFKAVAAAIRF 349


>gi|229166624|ref|ZP_04294376.1| Flagellar biosynthetic protein [Bacillus cereus AH621]
 gi|228616878|gb|EEK73951.1| Flagellar biosynthetic protein [Bacillus cereus AH621]
          Length = 348

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 177/348 (50%), Gaps = 5/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     Y +   + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIISQIKFIFLAILIILIILSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K+   + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R 
Sbjct: 237 RKNFMHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRT 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A E  IP+ E   LARSL+ QV  +  IP   Y AV +++  +   K
Sbjct: 297 LAREQEIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344


>gi|327394193|dbj|BAK11615.1| flagellar biosynthetic protein FlhB [Pantoea ananatis AJ13355]
          Length = 346

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 87/314 (27%), Positives = 163/314 (51%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           +L   I +L+     +    + +           + D   I+  + +L + A   ++P L
Sbjct: 1   MLLAGIMILWVGGAMMAHRLAAMVSTGLRFDHAMVTDDKIIIAHVGNLIMQAIAALLPLL 60

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
              ++  I S ++    V++   +K  F +++   G+KR+++        K  +K ILVG
Sbjct: 61  GGLVLVAIASPMLLGGVVISGKSIKVDFGKLNPLSGLKRMFAAQAWTELFKGILKTILVG 120

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
            +    +  ++  ML  I+ +P + L H    +     +++L +  +   D+ W  +  +
Sbjct: 121 CVAGWYVWSHWPDMLRLIAESPTTALIHGMDMIAICCSLVMLGLIPMVGYDVFWQLYSHF 180

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
            KL+MS+QEI+DE KQ  G+P +K R +   R+  R +MM    +A +I+TNPTHY++AL
Sbjct: 181 KKLRMSRQEIRDEHKQQEGDPHVKGRIRQQMRAAARRRMMADVPKADVIVTNPTHYSVAL 240

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
           +Y + +  AP ++AKG   IA ++R++  EH IP+ E P LAR+L++   I   IP   Y
Sbjct: 241 QYNEKKMSAPKVIAKGAGDIALRIRELGAEHRIPVLEAPPLARALYRHTEIGQHIPGALY 300

Query: 340 KAVAQLIYKIYHKK 353
            AVA+++  ++  +
Sbjct: 301 GAVAEVLAWVWQLR 314


>gi|160875393|ref|YP_001554709.1| secretion system apparatus protein SsaU [Shewanella baltica OS195]
 gi|160860915|gb|ABX49449.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS195]
 gi|315267593|gb|ADT94446.1| type III secretion protein, YscU/HrpY family [Shewanella baltica
           OS678]
          Length = 349

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K++ +A N G    S E      +   L Y L+     + ++ + L  L   
Sbjct: 3   EKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMA-LIDLTIH 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A    LE  +    ++   ++ A R +    L+ +   +   L+Q  PV     + PS  
Sbjct: 62  AINLPLETAAE--QIVGTFAVLALRFLGGLTLVLVFTIVVGNLVQTGPVWAAESIMPSMD 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++++    K++ S+ +L    K+ VK+ ++  +    L                  +   
Sbjct: 120 KLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCGEACGISVI 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +    L       + D  +  +    +LKMSK + K E K S GNP +K +++ 
Sbjct: 180 STMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             R      +     +AT+++ NPTH A+ L Y + E   P ++ K ++ +A  +  +A 
Sbjct: 240 TQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAEDHMALHIVALAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  +PI E   LAR+LFK V     IP   ++ VA+L+  +
Sbjct: 300 KAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELLRLV 340


>gi|300722693|ref|YP_003711983.1| putative flagellar export protein [Xenorhabdus nematophila ATCC
           19061]
 gi|297629200|emb|CBJ89797.1| putative part of export apparatus for flagellar proteins
           [Xenorhabdus nematophila ATCC 19061]
          Length = 339

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 154/307 (50%)

Query: 47  LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
           +L+     I    S +     +     + +   ++  +  L   A   ++P     ++  
Sbjct: 1   MLWMSGQSITHELSLMVFEGFNFDHNMVSNDKQMLQQVGRLLKQAVWALLPVFAGLVLIA 60

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           + +  +    + +   +K    +++   G+K+I+S+N L    K+ +K  LVG    + +
Sbjct: 61  LSAPALMGGLLFSSKSIKFDLTKLNPISGLKKIFSMNALAELFKAILKASLVGGGAALFI 120

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             N+  ML+ I+  P   L  A   +     +IL  +  +   D+ +       KL+M++
Sbjct: 121 WLNWPAMLNLIAQPPLMALNDAVLMMIFASYIILFMLIPMVAFDVLYQIRSHLKKLRMTR 180

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QEIKDE K+  G+P +K R +   R+  R +MM    +A +I+TNPTHYA+AL+Y   + 
Sbjct: 181 QEIKDEFKEQEGDPHVKARIRQQQRAAARKRMMADVPKADVIVTNPTHYAVALQYDSKKM 240

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP ++AKG  LIA +++++  E+ IP+ E P LAR+LF+   +   IP   Y AVA+++
Sbjct: 241 SAPKVLAKGAGLIALRIKEMGAENRIPLLEAPPLARALFRYAEVGGFIPAALYAAVAEVL 300

Query: 347 YKIYHKK 353
             +Y  K
Sbjct: 301 AWVYQLK 307


>gi|119947198|ref|YP_944878.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37]
 gi|119865802|gb|ABM05279.1| flagellar biosynthetic protein FlhB [Psychromonas ingrahamii 37]
          Length = 374

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 174/350 (49%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D   +KTE  S++K++ +  EG    ++E +    +L   +Y    F   I     +L 
Sbjct: 2   SDNAQDKTEQASAQKLKKSKGEGQIARAKEFASACMLLGFCLYFYLSFER-IAEAALNLF 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L  S +   L+D   ++  L     +   +  P + + ++  +   L+    V +   +
Sbjct: 61  KLNFSFSVATLQDNDQMLIRLNKSLFTLIEIFFPFIFVVVLSTLIGSLVLGGWVFSFKTI 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P   ++S  +GIKR++S+  LV  +KS +K+ ++  ++   L+ N   ML        +
Sbjct: 121 QPKLDKLSFLKGIKRMWSLKTLVELIKSILKVAVIVYLLYSFLSNNLLYMLSLQRLPIEA 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
                   +    + I+  +    ++D+ +  +++  ++KMSKQE+K+E KQ+ G P +K
Sbjct: 181 SSIAVLTKLATYSLYIIAILLLYGLIDLPYQLYEFNKQMKMSKQELKEEHKQAEGRPEVK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + I +   +  + +    A +II NPTHYA+A++Y     +AP LVAKG +  A  +
Sbjct: 241 QRIRQIQQQMSQRAITKTVPDADVIIMNPTHYAVAIKYDPKRAEAPFLVAKGNDQTALFI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++IA ++N+ +   P+LAR+++    +   IP   + A+A ++  +   +
Sbjct: 301 QRIALDNNVEVVISPALARAIYHTTQLEQMIPNQLFVAIAHVLSYVMQLR 350


>gi|325475307|gb|EGC78492.1| FlhB [Treponema denticola F0402]
          Length = 390

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 174/352 (49%), Gaps = 8/352 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+  KI  A  EG    S++ +    +L  +I L+        S+   +   
Sbjct: 33  EDEGRTEDPTEYKIRKAREEGRVAKSQDLNAAMVVLLPVISLIIMGPYIFKSLMQVIAFF 92

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124
               T   + + +          L   + V P   + ++ G+   +IQ    + +   ++
Sbjct: 93  FERCTTEDVVNGT----WFRIFVLYFFKTVFPITGVALISGVLGNIIQNRGFLFSTKPIQ 148

Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P FKRV+       KR ++S   L N  KS  K++++G I  + +  N   M+  + ++ 
Sbjct: 149 PDFKRVTPNFARFFKRALFSAEGLFNLAKSLFKVVIIGFIGYLVIKNNITKMIALLQSDF 208

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
            + +     T  ++L+   + +  L++ D  +   Q+   LKMSK E+ DE K+  G+P+
Sbjct: 209 PNSIIFIAKTAAQILVYAAVALVLLSIPDYFFQKRQFSESLKMSKTEVTDEYKELEGDPM 268

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K +     ++ ++   ++    A ++ITNPTHYA+AL++ Q    AP++++KG +  A+
Sbjct: 269 VKAQINRQMQAILQKTGIKNVPDADVVITNPTHYAVALQWKQGVMPAPMVISKGVDATAQ 328

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++IA E+NIP  E   LAR+L+  V +   IP  +YK+++ +  KIY  K
Sbjct: 329 NIKRIARENNIPTIENVPLARALYANVDLGQIIPSEYYKSLSIIFLKIYSMK 380


>gi|237751917|ref|ZP_04582397.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376676|gb|EEO26767.1| flagellar biosynthetic protein flhb [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 354

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 173/351 (49%), Gaps = 5/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+++KIE A  EGN   S + + F  ++  L  +   F+  +  + S
Sbjct: 1   MADD---AEKTEEPTARKIEKAREEGNVLKSPDVNAFLGLVVGLALVFLCFNFWVRGLGS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +  S +Q      ++ + +   L      L+ P     M+ G+ + + Q   +L  
Sbjct: 58  VFEQIYQSFSQE--FTRANAMSITLSLVFQVLYLLAPIFGALMLIGVIANVSQSGFLLTA 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P  ++++   G+K + S+  L++      K++    I           +       
Sbjct: 116 KAIQPKLQKLNFITGMKNLISLKKLLDGFLITFKVLSAFIIAFFVFLGFMHELTTVALFP 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +         ++ ++L F   +  +D     +Q++  L+MSKQE+KDE K   G+ 
Sbjct: 176 LGDQMLWFRDKAIILIGILLAFFLVMASVDYMIKRYQYFKSLRMSKQEVKDEFKNQEGDQ 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +S+     R +MM+    A +++TNPTHYA+ALRY   +  AP ++AKG + +A
Sbjct: 236 QVKGKIRSLMFQAARKRMMQNIPSADVVVTNPTHYAVALRYDSKKERAPRVLAKGVDFLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +++++IA EH IPI E P LAR+L+K V ++  IP   Y+A+  ++ ++  
Sbjct: 296 QRIKEIATEHEIPIIENPPLARALYKDVDLDMEIPESLYQAMVNVLLEVKR 346


>gi|300764490|ref|ZP_07074483.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL
           N1-017]
 gi|300514844|gb|EFK41898.1| flagellar biosynthetic protein flhB [Listeria monocytogenes FSL
           N1-017]
          Length = 348

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +    +   + +L+        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPKLANMESYSLFYLM-----EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDEVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|224584067|ref|YP_002637865.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468594|gb|ACN46424.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 352

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGGVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            L   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|126734112|ref|ZP_01749859.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2]
 gi|126716978|gb|EBA13842.1| flagellar biosynthetic protein FlhB [Roseobacter sp. CCS2]
          Length = 361

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 167/350 (47%), Gaps = 2/350 (0%)

Query: 1   MS-ENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS + +   +K   PS KK++DA  +G    S + +  ++    L+ +L      +  ++
Sbjct: 1   MSGQEEEDSDKQYEPSQKKLDDARKKGEIARSADLTTAAAYAGLLLAMLTIGPVALLDLS 60

Query: 60  SDLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           + L +LL  +     L        L   +    +  V P   +  +  I S ++QR  + 
Sbjct: 61  TSLSILLEQSNDLSSLAFAGGGTALHGGILREVAWGVAPWFAVPAVLAIVSVILQRGFLF 120

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
             + + P   R+S   G+K  +    L  F KS  K+ +   ++   L      ++  + 
Sbjct: 121 TGSKLVPKLNRISPISGVKNKFGRQGLFEFAKSSTKLTIYCVVLGFFLVGQIERIIGSMQ 180

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             P  I+      +  ++ ++LL    L  +D  W   +   K +MS++E+ DE+KQS G
Sbjct: 181 LPPRLIIAELGHMLLALMGIVLLISLALGTIDFLWQRAEHTRKNRMSRKEMMDELKQSEG 240

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK +++        +KM+     A ++I NPTHYA+AL++ +++  AP+ VAKG + 
Sbjct: 241 DPFIKQQRRQRGHDIATNKMLLDVPTADVVIVNPTHYAIALKWDRSQAMAPICVAKGVDE 300

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +A ++R+IA E  +P+  +P  AR+L  +V +   I    Y+AVA  I  
Sbjct: 301 VAARIREIAAESAVPMHSDPPTARALHAEVTLGQEISQHHYRAVAAAIRF 350


>gi|146309439|ref|YP_001189904.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina ymp]
 gi|145577640|gb|ABP87172.1| flagellar biosynthetic protein FlhB [Pseudomonas mendocina ymp]
          Length = 377

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 173/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE ++   KTE  S+ K++ +  +G    S++ S   S+LA L  L F     +  ++ 
Sbjct: 1   MSEQNSGQEKTEEASAHKLKKSKEDGQVARSKDLSTTISLLATLFILKFSAGLFLEGLSD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              +        ++  +  +  LL +  L   +L+ P LL  ++  +   L+    V + 
Sbjct: 61  SFRLSYIQFGHSEI-GLDDLDTLLGYNMLVFIKLLAPMLLTSVLV-VALSLVPGGWVFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +  P   +++   G+ RI+S  N    +KS +K++++  +  + +      ++    ++
Sbjct: 119 KNFAPKLSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPELIALQRSS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  A      +++ ++L     + +DI    + +  K++M+KQE K+E K   G P
Sbjct: 179 VVQAISAALNLTFNLILCLMLVFVLFSFIDIPLQRYFFLKKMRMTKQERKEEHKNQEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R K + R  ++ ++ +    A +II NPTHYA+AL+Y   +  AP ++AKG +  A
Sbjct: 239 EVKARIKQLQRQMLQRQISKVIKNADVIIVNPTHYAVALKYDSKKAAAPFVLAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A +H + + E P LAR+++    IN  IP   Y AVA ++  I   K
Sbjct: 299 LYMRQMAKKHELEVLEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQLK 351


>gi|21672516|ref|NP_660583.1| flagellar biosynthesis protein FlhB [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008464|sp|Q8K9S1|FLHB_BUCAP RecName: Full=Flagellar biosynthetic protein flhB
 gi|21623138|gb|AAM67794.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 381

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 99/350 (28%), Positives = 172/350 (49%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  + KTE P+   I+    +G    SRE +    ++  L  L +     I+ + + + 
Sbjct: 3   HDINEEKTEQPTEHHIKKFRKKGETRYSRELNSLLILIFGLSNLWWSRYSIIFELKTIMF 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               +  Q  L +  +I             +  P     +   I   ++      N   +
Sbjct: 63  NSF-NFNQNILTNQQNISLNFFFFIKKILIVFFPFFSFLICIIIIPPILFGGIKFNFTSL 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K +F R++L  G+K+ +S    +   K+ +K+ ++  I    L   ++ +L   + N  S
Sbjct: 122 KLNFARLNLLHGLKKFFSFQIFIELFKTTLKLFIISCISIFYLWIYFYKILFLSTKNISS 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L   F  +    I+I+L +  + +LD+ W    +Y KLKM+ QEIKDE K+  G+P IK
Sbjct: 182 SLLDGFNVIFYCCILIILGLIPIVILDVFWRQWSYYKKLKMTHQEIKDEFKEREGSPQIK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R +   +  +R +M+    +A +IITNP HYA+AL+Y   + +AP ++AKG    A K+
Sbjct: 242 ARIRQQMKINLRRRMISDVPKADVIITNPIHYAIALKYDIHKMNAPKVIAKGIGATAMKI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +KIA ++ I I   PSLAR+L++   I   IP   YKAVA+++  ++  K
Sbjct: 302 QKIALKNGIAIIASPSLARALYRYSEIGQYIPGPLYKAVAEILAWVWKVK 351


>gi|145284335|gb|ABP51916.1| AscU [Aeromonas veronii bv. sobria]
          Length = 352

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 176/347 (50%), Gaps = 3/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + IL+ +  L+      +  +   + +  
Sbjct: 2   SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMMIPE 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +       + ++H+V    +L    + L IP L + ++  + S+  Q   +L+   +KP 
Sbjct: 62  SHINLPFTQALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML         I  
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMSCITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P IK+++
Sbjct: 179 VLGGMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E  IP+ +   LAR+L++   +N+ IP    +A A+++  +   +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVLRWLEQWR 345


>gi|323698077|ref|ZP_08109989.1| flagellar biosynthetic protein FlhB [Desulfovibrio sp. ND132]
 gi|323458009|gb|EGB13874.1| flagellar biosynthetic protein FlhB [Desulfovibrio desulfuricans
           ND132]
          Length = 356

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 175/351 (49%), Gaps = 3/351 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
               +KTE  + K+ +    EGN    +E     ++LA ++ L F         T     
Sbjct: 4   QEDPSKTERATQKRRDKQREEGNVAKGQEIPKVMTLLAGVLTLRFMIGFYSDQFTEIYRW 63

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
               A   ++ D      L        + LV+P +L+  +    S  +Q   +     ++
Sbjct: 64  TFLEAINFQV-DKPMAYALFAWGLKKMALLVVPFMLVLALVAFLSLRLQVGSLWTTKPLE 122

Query: 125 PSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           P F ++ ++  GIK+ + S + L+   KS ++ + V     I + +    +L    +N  
Sbjct: 123 PKFGKLFNIMSGIKKLMLSPDALLKLGKSLLQAMAVAIAPYIVIRQELPNLLPLFHSNVQ 182

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            IL        +++   L+ +  + V D+ +    +  ++KM+K EIKDE KQ+ G+P I
Sbjct: 183 GILAFIVTVGYRMVCYALIPMLLIAVADLVYERWNYEEQIKMTKDEIKDERKQAEGDPKI 242

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K +Q+      +  +M +   +A ++ITNPTHYA+AL+Y   +  AP+++AKG N +A++
Sbjct: 243 KQKQRQKMMEVMASRMFQDIPKADVVITNPTHYAVALQYDPLKAPAPLVLAKGVNKVAER 302

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++++A E++IPI E   LA++L+KQV I   IP   ++AVA ++ K+   K
Sbjct: 303 IKEVARENSIPIEENRPLAQALYKQVEIGETIPEELFQAVAAILAKLEKFK 353


>gi|332527145|ref|ZP_08403222.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2]
 gi|332111573|gb|EGJ11555.1| flagellar biosynthesis protein [Rubrivivax benzoatilyticus JA2]
          Length = 386

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 86/356 (24%), Positives = 171/356 (48%), Gaps = 9/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D   ++    S +KI  +  +G    S++    +++ A L  L+ F       +T 
Sbjct: 1   MA--DDAQDRRLPASQRKISKSREDGQVARSQDLGHLATLGAGLALLIVFAP----RLTD 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHL---SLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            L  +L +  +   + +     +L  L    +    +V+P   +  +    S ++     
Sbjct: 55  WLRRVLETGLRFDAQAMDRPGTMLERLSASGVDMLVVVLPLGAVVAVVAAASAVLAGGWN 114

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                ++P F +++   G+  ++    LVN +K  +  +++G I  + L          +
Sbjct: 115 WTFKPMQPKFSKLNPITGLGNLFKGQQLVNTLKICLLALILGAIGMLYLHAQLAEFTSLV 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +    + +      ++  ++++LL +    ++D+         +L+MS +E+K E K+S 
Sbjct: 175 AMPLPTAMAETGSLLQGGMVLLLLALTLFALVDVPLQRFMLLRRLRMSFEEVKQEHKESE 234

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K + K+  R   R KMM A   A +++ NPTH+A+AL+Y +    AP +VAKG +
Sbjct: 235 GNPEVKGKIKAKMREMARRKMMAAVPSADLVVMNPTHFAVALKYDEATMAAPRVVAKGAD 294

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+A ++R  A   N+P+ E P LAR+L++   I+  IP   + AVAQ++  +Y  +
Sbjct: 295 LLAFRIRDAAKAANVPVLEAPPLARALYRHAEIDQEIPAALFGAVAQVLAWVYQLR 350


>gi|322615094|gb|EFY12017.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619935|gb|EFY16808.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622247|gb|EFY19092.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627769|gb|EFY24559.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632886|gb|EFY29630.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636623|gb|EFY33326.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641184|gb|EFY37826.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644881|gb|EFY41414.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650283|gb|EFY46697.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655856|gb|EFY52158.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660182|gb|EFY56421.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665252|gb|EFY61440.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669509|gb|EFY65657.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673435|gb|EFY69537.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677363|gb|EFY73427.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679974|gb|EFY76013.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687446|gb|EFY83418.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194101|gb|EFZ79300.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198582|gb|EFZ83683.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202908|gb|EFZ87943.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208628|gb|EFZ93566.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211164|gb|EFZ96011.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217605|gb|EGA02320.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218954|gb|EGA03464.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223784|gb|EGA08088.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229407|gb|EGA13530.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232630|gb|EGA16726.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240332|gb|EGA24376.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242679|gb|EGA26700.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245890|gb|EGA29878.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323256473|gb|EGA40206.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260036|gb|EGA43661.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323271476|gb|EGA54897.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 352

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  + + +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLTHALIESLTSALLFLGAG---VIVATVGSVFLQVGGVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            L   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|241761183|ref|ZP_04759272.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752855|ref|YP_003225748.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241374802|gb|EER64263.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552218|gb|ACV75164.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 380

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 3/353 (0%)

Query: 1   MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+++D   D KTEAP+ K++ +   +G+   S+E  +  ++LA L + L      +Y + 
Sbjct: 1   MADSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVYDLG 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L + L+               +   L            +L     I +  +       
Sbjct: 61  IMLKMGLS--FDFNAFSKFDPFSVFIRLITCIILPFSMLFVLMAFAAIAAPAVLGSLGFR 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +    +R++   G  R++ +  L    KS VK++L+G++    L +    ++     
Sbjct: 119 WEALNFKPERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLWILWQRLPVIMQLGRH 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  + +         +++++ + +A +  +D+     +   +L+MSKQEIKDE KQ+ G+
Sbjct: 179 DLKAAINEIGHIFLILVLVMSVALAVVAAIDVPIQIFRRNRRLRMSKQEIKDEHKQTEGS 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK   +    +  R    +A   +T++ITNPTH+A+AL+Y   E+ AP++ AKG + +
Sbjct: 239 PEIKAAVRQRQIAVFRASNRKAVQDSTVVITNPTHFAVALKYKAGEDIAPIVTAKGIDEL 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A  +R++A E ++P+   P LAR+++        I    YKAVA ++  I+  
Sbjct: 299 ALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELYKAVASILAFIFRL 351


>gi|238913175|ref|ZP_04657012.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 352

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLVALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S+++LV   KS +K+I++  I          T            L   
Sbjct: 120 HINPVSNFKQIFSLHSLVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLVCGLLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQASYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|332531605|ref|ZP_08407502.1| type III secretion exporter [Hylemonella gracilis ATCC 19624]
 gi|332038968|gb|EGI75397.1| type III secretion exporter [Hylemonella gracilis ATCC 19624]
          Length = 417

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 167/350 (47%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
             +  ++    S +K++ A  +G  P SR+ S  + +    + L+   +P IYS   +  
Sbjct: 2   ESSSQDRNLPASQRKLQRAREDGQVPRSRDFSHLAVLGGGAVTLV-LTAPWIYSALRESL 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               S +   + D   ++  L  ++L+ + + +   ++ +   + + L     V     +
Sbjct: 61  ARHLSFSAADVRDPKFMLDHLHTMTLTGAGISLGIAVIIVAIAVVATLAGGGWVWTTTPL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P F R++  +G++ +++   L   +K       V  +  + +     ++   +     +
Sbjct: 121 APDFSRINPIKGLQGMFTKKKLAEVVKLAFIAFFVLALAAVFIYYTLPSISTLVLQPSTA 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            +      +     ++L  +  + ++D+        S+LKMS QE+KDE K   GNP +K
Sbjct: 181 GIERMLNWLVMGCGLLLAVVLLVALIDLPLQIFLHKSELKMSLQEMKDEHKDIEGNPQMK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +R++   R   + + +    +A  ++ NPTHYA+A++Y +    AP +V+KG +L+A K+
Sbjct: 241 SRRRQKQRELAQRQSLPKVPQADFVLMNPTHYAVAVKYEEKSMAAPRVVSKGADLLAMKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R +A  H +P+ + P LAR+L+    ++  IP   Y AVAQ++  +Y  K
Sbjct: 301 RDLAKAHQVPVLQSPVLARALYAHAELDQDIPSTLYTAVAQVLAYVYRLK 350


>gi|320177410|gb|EFW52411.1| Flagellar biosynthesis protein FlhB [Shigella dysenteriae CDC
           74-1112]
          Length = 324

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 159/286 (55%)

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                 ++D + I+  +  L   A   ++P +   ++  + S ++    V +   ++P F
Sbjct: 7   HFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKF 66

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P + + +
Sbjct: 67  SKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLLAESPITAMGN 126

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K R +
Sbjct: 127 AMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIR 186

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R+I 
Sbjct: 187 QMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIG 246

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E+N+P  E P LAR+L++   I   IP   Y AVA+++  I+  K
Sbjct: 247 AENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWIWQLK 292


>gi|167572950|ref|ZP_02365824.1| secretion system apparatus protein SsaU [Burkholderia oklahomensis
           C6786]
          Length = 377

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 156/346 (45%), Gaps = 5/346 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    S E +    +   L Y LF  +     +      L+  
Sbjct: 3   EKTEKPTAKKLADARKKGQVAKSVEITSGVQLAVLLGYFLFEGA----HLLQAFEALVDV 58

Query: 69  ATQRKLEDISHIVFLLT-HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +     +D +      T  L     R  +   +L +   + + + Q  P+L +  +KPS 
Sbjct: 59  SIAVVNDDFAAATARWTSALGAVLIRFTLGMAVLVIAMTVAAAIAQIGPLLAVEALKPSL 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++    +K+++S+ +L  F KS  K+ ++  I    + +   ++      +    L  
Sbjct: 119 DKINPLANLKQMFSLKSLFEFAKSLFKVGVLSAIFFYLIRQYAPSLQFLPLCSVECGLAV 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +   +  +   ++ F     + D  +  +    +L MS ++IK E K S GNP IK++++
Sbjct: 179 STQLLYWMWAALVGFYVVFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKHKRR 238

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            I R      +    +++T+++ NPTH A+ L Y + E   P ++  G++ +A  +  +A
Sbjct: 239 EIHREVQSGSLAANVAKSTVVVRNPTHVAVCLYYRRGETPLPEVIEIGRDKLALHIVALA 298

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
               +P+ E   LA +L  ++ +   IPP  ++ VA L+      +
Sbjct: 299 ERERVPVVENVPLAHALANRLDVGQRIPPDLFEPVAHLLRVAMQLR 344


>gi|46398249|gb|AAS91803.1| AscU [Aeromonas hydrophila]
          Length = 352

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 3/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + IL+ +  L+      +  +   +   L
Sbjct: 2   SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLIAMSDYYLEHLGKLM---L 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A+   L     +  ++ +L    + L IP L + ++  + S++ Q   +L+   +KP 
Sbjct: 59  IPASHINLPFTEALNHVVENLMQEMAYLCIPILAVAVLVVLVSHIAQYGFLLSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K V+  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML         +  
Sbjct: 119 IKHVNPVEGAKKIFSIKSLMEFVKSLLKVTLLSLLVWVTIEGNLQAMLQLPGCGMSCVAP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P IK+++
Sbjct: 179 VLGGMMGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M     R+++I+ NPTH A+ + Y + E   PV+  K  +  A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGILYERGETPLPVVTLKFTDAQALQVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E  IP+ +   LAR+L++   IN+ IP    +A A+++  +   +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDAQINNYIPADQIEATAEVLRWLEQWR 345


>gi|284989537|ref|YP_003408091.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160]
 gi|284062782|gb|ADB73720.1| type III secretion exporter [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 170/353 (48%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ ++++ A  EG  P ++E   +    A    L          V +
Sbjct: 1   MAKDGPGGEKTEDPTPQRLKKARKEGQIPRTQELGTWVGAAAASFLLPMLVRNAFDQVGA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              + +      +  ++  +  LL     +   + +P  +  M+ G+ +   Q    ++ 
Sbjct: 61  ---MFVQVGAVVETPEVEAVTALLGQALDTFVTVALPMAVALMVVGVAASAAQGGVTVSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+ K+++   G+KR++  + L    K+ +K   +GT++ ++ ++    ++    A 
Sbjct: 118 KPMKPTLKKLNPFPGMKRMFGGHGLWEATKAVIKTAALGTVVVVT-SDRAQQLVSSAGAL 176

Query: 181 PHSILYHAFFTVRKVLIMILLFI-ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           P S +   F     ++I ++      + V D      +   +L+M+K EI+ E K S G+
Sbjct: 177 PLSAITATFTDSAVLMIRVVAVTGLVIAVADYVIVRKRTMKELRMTKYEIQQEHKNSEGD 236

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K ++++   +  R++MM   + A +++ NPTH A+AL+Y      AP +VAKG + +
Sbjct: 237 PHVKAQRRATQMAMSRNRMMAEVADADVLLVNPTHVAVALKYEPDR-GAPRVVAKGADEV 295

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A K+R+ A E  +P+ ++  LAR+L     I   +P   + AVA+++  +   
Sbjct: 296 AAKLRERAAEARVPLVQDVPLARALHASCEIGQEVPAQLFTAVARVLAFVMQL 348


>gi|238764055|ref|ZP_04625010.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii
           ATCC 33638]
 gi|238697726|gb|EEP90488.1| Type III secretion protein, YscU/HrpY family [Yersinia kristensenii
           ATCC 33638]
          Length = 358

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 144/342 (42%), Gaps = 5/342 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS   +   K E P++K++ +A  +G    S E +    +   + Y        +  V  
Sbjct: 1   MSGESS--EKNEKPTAKRLREAREKGQVIKSVEITSGIQLAVLVAYFFLAGDTLLDQVGV 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +    Q     ++ I    +        +V       ++  I + L Q  P+L  
Sbjct: 59  LIRSSIKQLQQPFTFALARIG---SECMAVLIHIVGILGGALILMTIIAGLAQVGPLLAT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V    + ++     K+++S+ +L    KS +K+ ++  I    L     +        
Sbjct: 116 KAVAFKGEHINPINNAKQLFSLRSLFELTKSLLKVGVLTLIFGYLLARYASSFGYLAYCG 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +  +      +  +L  ++      ++LD  +  +    +LKMS +E+K E K S G+P
Sbjct: 176 SYCAIPVFGTLMSWLLGALIACYGVFSLLDYSFQRYNTLKQLKMSHEEVKREHKDSDGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK +++ + +        +   R+T ++ NPTH+A+ L Y   +   PV++ KG+   A
Sbjct: 236 HIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYHPDDAPLPVVIEKGKGERA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
             + K+A +  IPI E  +LAR+L + V     IP   ++ V
Sbjct: 296 ALIIKLAQQQGIPIVENIALARTLHRDVACGDTIPEPLFEPV 337


>gi|251772429|gb|EES52996.1| flagellar biosynthetic protein FlhB [Leptospirillum
           ferrodiazotrophum]
          Length = 365

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 190/353 (53%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDN-KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M++N+     + E P+S+++E A  EG    SRE   F  + A LI +  + S  +  + 
Sbjct: 1   MADNENDGQLRQEEPTSRRLEKAREEGQVARSREVGYFFFLAASLILMASYGSRLVEGLR 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            D+   L  + +  L     I   +  L L       P L  F++FG+ +Y++Q   +++
Sbjct: 61  DDMSYYLRHSGEISL-TPDGITPFVKGLVLHEMGRTFPLLGGFLVFGVAAYIVQGGILVS 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
                  + RVS  +GIKR++S   L   ++  +K+++   I+  +L +++ T+   +  
Sbjct: 120 PKAAAIKWNRVSPSQGIKRLFSWRALEELLRYTIKVVVSLLILFYALKQDWMTLPALMET 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
             H ++   +     VL+  L   A L + D  +        L+M++ EIK+E K++ G+
Sbjct: 180 GAHRMVGALYHFTFVVLVSFLPLYAALAIGDYLFQRFMMMRGLRMTRTEIKEETKETEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P ++ R +SI R+  R +MM     AT++ITNPTH+A+ L+Y      APV+VAKG + +
Sbjct: 240 PHVRARIRSIQRAMARRRMMSKIKDATVVITNPTHFAVVLKYHPESMAAPVVVAKGADEV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A ++R+IA E  +P+ E+P  AR LF++ P++  IP  FY+AVA+++  +Y +
Sbjct: 300 AFRIREIAREVGVPVVEDPPTARGLFRECPLDREIPFTFYEAVARILSILYQR 352


>gi|205352862|ref|YP_002226663.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857072|ref|YP_002243723.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205272643|emb|CAR37553.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206708875|emb|CAR33205.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|309243390|gb|ADO51966.1| SsaU [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|322714480|gb|EFZ06051.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326627934|gb|EGE34277.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 352

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            L   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|15607000|ref|NP_214382.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5]
 gi|6225349|sp|O67813|FLHB_AQUAE RecName: Full=Flagellar biosynthetic protein flhB
 gi|2984250|gb|AAC07777.1| flagellar biosynthetic protein FlhB [Aquifex aeolicus VF5]
          Length = 350

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 184/353 (52%), Gaps = 8/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    ++KTE  +  K      EGN   S E +    +L  L+ LLF  +     +  
Sbjct: 1   MAE----EHKTERATPYKRRKVREEGNVAKSHEIASSLVVLLSLLLLLFLGTY----IAK 52

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++ ++  + T     DIS +  L  +   +  +++ P   L ++  I S++ Q   +  L
Sbjct: 53  EVILIFLAVTGYVHADISELGSLYENFYENIVKVLTPLFFLALLVVILSHVAQFGFIFTL 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   ++R++  EGIKR+ S+  L   +K+ +K  L+  I    L  + +  L   +  
Sbjct: 113 KPLSFKWERINPFEGIKRLISLTTLFETVKNTLKAFLLIGIAVFVLKGSLYFFLSSSTYP 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L     T    LI + +    +  LD  +   Q+  K+ MS++E+K+E KQ  G+P
Sbjct: 173 LAETLKSFIKTSAITLITLGVVALLIAFLDYAFKRWQYEKKIMMSRRELKEEYKQLEGHP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+R K+  R   + +MM    +AT++ITNPTH A+AL+Y   ++ APV+VAKG+  IA
Sbjct: 233 EVKSRIKARMRELAKSRMMAEVPKATVVITNPTHIAIALKYNPEKDKAPVVVAKGKGTIA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +K+ +IA  ++IP+  +P LAR+L+  V +   I P FYKAVA++I  +  KK
Sbjct: 293 QKIVEIAENYSIPVVRKPELARALYPAVEVGKEISPKFYKAVAEIIAYVMFKK 345


>gi|294140998|ref|YP_003556976.1| type III secretion system EscU protein [Shewanella violacea DSS12]
 gi|293327467|dbj|BAJ02198.1| type III secretion system EscU protein [Shewanella violacea DSS12]
          Length = 349

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 151/341 (44%), Gaps = 3/341 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K++++A N G    S E     + L   I L +F   G   + S ++++ ++
Sbjct: 3   EKTEKPTEKQLKEARNRGQVIKSPEI---VTGLQMAIILGYFLFEGQNLMQSIMYLINST 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L   +    +L   ++ A R +    L+ +   I   + Q  PV     +KPS  
Sbjct: 60  IDAINLPLETAANQILDRFAMVALRFLGGLALVLICTIIVGNIAQTGPVWAAESLKPSMN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++++    K++ S  ++   +K+ VK+ ++  +    L     +            +   
Sbjct: 120 KLNVVNNAKQMISWKSVFELVKNLVKVTVLCLVFYYLLHRYVNSFQYLPLCGEECGIEVI 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +    L       V D  +       +LKMSK +IK E K S GNP +K +++ 
Sbjct: 180 STLITWLWGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNPEVKQKRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I R      +     ++++++ NPTH A+ L Y   E   P+++ K ++ +A  +  +A 
Sbjct: 240 IQREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMALHIVGMAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +  IP+ E   LAR+++ Q+   S I    ++ VA L+  +
Sbjct: 300 KAGIPVVENIPLARAIYSQIETGSPISEDLFEPVADLLRVV 340


>gi|99082795|ref|YP_614949.1| flagellar biosynthesis protein FlhB [Ruegeria sp. TM1040]
 gi|99039075|gb|ABF65687.1| Flagellar biosynthetic protein flhB [Ruegeria sp. TM1040]
          Length = 363

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 159/350 (45%), Gaps = 2/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ +   +K+  P+ +K+  A  EG+ P S +    +S L  LI         I  + +
Sbjct: 1   MSDENDDSDKSFEPTPEKLRKARQEGDVPKSNDLLQAASYLGLLIAFYTAGRSSIEQLGT 60

Query: 61  DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            L  ++    +             +       A   VI    +     I +   Q+  V 
Sbjct: 61  VLMSMIDQPDRLAPVFFGDGIAAPVAWEFISDALTSVIAWFAVPAALVILAVFAQKAMVF 120

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P   R+S+ +  K  +  + L  F KSF K++L    + + L+     M+  + 
Sbjct: 121 APKRIQPKLSRLSIIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGVYLSWRLPEMIASVG 180

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            +P +++        + LI+ L+    + ++D  +   ++  K  MS++++ DE+K S G
Sbjct: 181 TSPFTVVPFLVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEG 240

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P  K ++K   R  +  ++  A   A ++I NPTHYA+AL++ +    AP  VAKG + 
Sbjct: 241 DPHTKGQRKQKGRQIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDG 300

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +A  +R+IA E+ +P+  +P  AR+L+  V +   I    Y  VA  I  
Sbjct: 301 VAAMIREIAQENGVPLHSDPPTARALYATVEVGEEIAEEHYAPVAAAIRF 350


>gi|145301466|ref|YP_001144305.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|38201232|emb|CAD56767.1| ascU protein [Aeromonas salmonicida subsp. salmonicida]
 gi|66947955|emb|CAE83092.1| AscU protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856348|gb|ABO92557.1| AscU protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 352

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 177/347 (51%), Gaps = 3/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK+ DA  +G    S+E    + IL+ +  L+      +  +   + +  
Sbjct: 2   SGEKTEQPTPKKLRDARQKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMMIPE 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +       + ++H+V    +L    + L IP L + ++  + S+  Q   +L+   +KP 
Sbjct: 62  SHINLPFTQALNHVV---ENLMQEMAYLCIPLLAVAVLVVLASHFAQYGFLLSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML       + I  
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIKGNLQAMLQLPGCGMNCITP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  +    + + D  + ++Q   +LKMSK E+K E K+  G+P IK+++
Sbjct: 179 VLGSMLGQLMAVCAMGFVVIAIADYAFEHYQHIKQLKMSKDEVKREYKEMEGSPEIKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A ++RKI
Sbjct: 239 RQFHQELQSSNMRADVKRSSVIVANPTHIAIGIRYERGETPLPVVTLKFTDAQALQVRKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A +  IP+ +   LAR+L++   +N+ IP    +A A+++  +   +
Sbjct: 299 AEDEGIPVLQRIPLARALYRDAQLNNYIPADQIEATAEVLRWLEQWR 345


>gi|126738573|ref|ZP_01754278.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6]
 gi|126720372|gb|EBA17078.1| flagellar biosynthetic protein FlhB [Roseobacter sp. SK209-2-6]
          Length = 360

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 84/349 (24%), Positives = 164/349 (46%), Gaps = 2/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++D  D K+  P+ +K++ A  +G    S + S+ ++ L  ++      +  +    +
Sbjct: 1   MSQDDDSD-KSFEPTPQKLQKAREKGEVAKSTDLSVAAAYLGLVLAFYAVGADMVAGTGT 59

Query: 61  DLHVLLASATQRKLEDI-SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L        +   +         +  L  + +  +IP  L+  +  + S L Q+  V  
Sbjct: 60  VLMTFFDQPDRLAQQLFYGGGTAPVGGLLTAIATPLIPLFLIPAVLVLLSILGQKALVFA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + ++P   ++S+    K       L  F KS  K+ +    + + LT     M+  +  
Sbjct: 120 PSKLEPKLSKISIISNAKNKLGRAGLFEFGKSAFKLTIYSICLGVYLTHRMPEMIASVGT 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              S++        + L++ LL    + V+D  + + +   K  MS++EI+DE K S G+
Sbjct: 180 GAFSVIKLLSELGMEFLVIALLVSLPIGVVDAVFQHAEHRRKNMMSRKEIQDEQKNSEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K +++  A++    +MM A   A++++ NPTHYA+AL++      AP+ VAKG + +
Sbjct: 240 PHMKAKRRQKAQAIALGQMMGAVPDASVVVVNPTHYAVALKWEGGAGTAPICVAKGVDEV 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A  +R++A E+ +PI  +P  AR+L+  + I   +    Y  VA  I  
Sbjct: 300 AAAIRQVANENAVPIHSDPPTARALYATIEIGEEVMEEHYAPVAAAIRF 348


>gi|332162921|ref|YP_004299498.1| flagellar assembly protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667151|gb|ADZ43795.1| Flagellar assembly protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 377

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 167/340 (49%), Gaps = 3/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+S K+  A  +G+ P S++ ++ + ++  LI L  F       +      +  +A +  
Sbjct: 12  PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLPYYKELIGESFLAVGRTAGR-- 69

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           ++D + I  LL        + ++  L    +  I + L+          + P FK++S  
Sbjct: 70  IDDPTAIEQLLLANLFIFFKFLL-TLAPIPLVSILATLVPGGWNFTPVKLIPDFKKLSPL 128

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            GIK+I+S +N    +K   K  +V   + + +  +   +L   +      +   F    
Sbjct: 129 AGIKKIFSASNGTEVLKMLGKCSIVLYTLYLMVKNSLPDLLRLQALPLQEAITEGFTLYH 188

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            +L+  +  I     +DI  S + +  K+KM+KQE+K E K + GNP IK R + + R  
Sbjct: 189 GILVYFIAIIVIFAAIDIPLSNYLFTKKMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQF 248

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
              ++ +    A +IITNPTH+++AL+Y   +  AP ++AKG++ IA  +R +A  ++I 
Sbjct: 249 AMGQINKTVPNADVIITNPTHFSVALKYAPEKASAPYIIAKGKDDIALYIRTVAKNNDIE 308

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           I E P LAR+++    +N  +P   Y+A+AQ++  +   K
Sbjct: 309 IVEFPPLARAIYHTTKVNQQVPAQLYRAIAQVLTYVMQVK 348


>gi|194734066|ref|YP_002114435.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194709568|gb|ACF88789.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
          Length = 352

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  + + +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLTHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            L   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|227873532|ref|ZP_03991777.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268]
 gi|227840622|gb|EEJ51007.1| flagellar biosynthesis protein FlhB [Oribacterium sinus F0268]
          Length = 361

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 175/353 (49%), Gaps = 8/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    KTEAPS KK  DA  EGN   SR+    + +   + Y + F  P IY    
Sbjct: 1   MADGD----KTEAPSEKKRSDARKEGNVFQSRDIVTVAVLF-GVFYAVRFMMPFIYK--- 52

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL   L+   +   E       L    +    +  +P LL+ +  G+ + L+Q    ++ 
Sbjct: 53  DLRNFLSYILELLDEPSPISNKLYLRFTWLFVKSAMPLLLVTVFLGVIASLVQTRFNISF 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +++  +G+ RI+S  N+V  +K+ +KII++   +   +  +   +   +  +
Sbjct: 113 KLLTPKFSKLNPMQGLGRIFSKKNVVELLKNILKIIILINFLYSIIKADIIPIAKMVHMD 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +        +  ++  +      + + D  +   ++ + LKM+KQE+KDE K   GNP
Sbjct: 173 IQNSSLALVSMMFDLITRVCGVFLIIALFDFMYQKWEYENNLKMTKQEVKDEYKMLEGNP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK R K   R+R   +MM+    A +II NP H A+A++Y   +N APV++AKGQ+ +A
Sbjct: 233 EIKGRMKQQMRARANQRMMQQVPDADVIIRNPEHLAIAIKYDPDKNTAPVVLAKGQDELA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++  +   + +   E   LAR+++    +   IP  FY AVA+++  IY K+
Sbjct: 293 LRIVAVGEANGVTAIENKPLARAMYPLCHVGKEIPGDFYGAVAEILVYIYQKE 345


>gi|85710192|ref|ZP_01041257.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
 gi|85688902|gb|EAQ28906.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
          Length = 378

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 168/353 (47%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    + +   P+ K+  DA  +G+   S+E +  + ++A   +++    P +     
Sbjct: 1   MSEETNGEKRF-DPTPKRRSDAAKKGDVLRSKEVATAA-VMAAGTFMILIIGPWLLDSME 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +           L D +    +++ ++      +    L+ +   +GS ++        
Sbjct: 59  RVARAAFGFDPAGLGDFA-PGAMISQIAQEILPPIFAIGLVVIAVTVGSQMVLGEGRWVP 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            ++KP   R++   G+KRI+ +  L+   KS +K++L+G+I    ++ +   ML      
Sbjct: 118 QNLKPKPSRINPLSGLKRIFGMQGLIELGKSILKLLLLGSIAAWWVSGSLDGMLGLGRGT 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A+  +  ++ M+++ +  + V+D      Q   +LKMS Q++KDE KQS G+P
Sbjct: 178 LDAQLNFAWDAMTTLVAMLVVGLLVIAVIDYPLQRLQRDKRLKMSFQDLKDENKQSEGSP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K  ++   R   R  + +A   A  I+ NP H+A+AL Y      APV++AKG+   A
Sbjct: 238 EMKMARRQRQRDLSRGSIGKAMKEAQFIVVNPMHFAVALTYDPNLAPAPVVLAKGRGETA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A E  +P+   P LAR+L+     +  +    Y A+A L+  +   K
Sbjct: 298 MAMRELASEMELPVLHYPQLARALYFTTRADQMVREELYVAIAALVAFVMSLK 350


>gi|16764772|ref|NP_460387.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161614161|ref|YP_001588126.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167995056|ref|ZP_02576146.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262232|ref|ZP_03162306.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|3024668|sp|P96069|SSAU_SALTY RecName: Full=Secretion system apparatus protein ssaU
 gi|1695196|emb|CAA68202.1| secretion system apparatus, SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419943|gb|AAL20346.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161363525|gb|ABX67293.1| hypothetical protein SPAB_01903 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197240487|gb|EDY23107.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205327191|gb|EDZ13955.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|267993311|gb|ACY88196.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157957|emb|CBW17452.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912407|dbj|BAJ36381.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323129694|gb|ADX17124.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988309|gb|AEF07292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 352

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + +++F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|119714987|ref|YP_921952.1| type III secretion exporter [Nocardioides sp. JS614]
 gi|119535648|gb|ABL80265.1| type III secretion exporter [Nocardioides sp. JS614]
          Length = 381

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 154/346 (44%), Gaps = 6/346 (1%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             K+E P++K+ ++   EG  P S E   +S++L   ++L   F   I  +      + +
Sbjct: 3   GEKSEKPTAKRNKENRKEGQVPRSPEIGAWSALLLIAMFLPRLFGHEIDKLRELTTTMFS 62

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           SA      D    V LL         +++       + GI   L Q    L    VKP  
Sbjct: 63  SAADA---DAEIAVQLLGQGLWHVLLVLVVLGAGIAVVGIAGALGQGGFFLATKSVKPKL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++   G KRI+    L    K  ++  +V  ++ +++      +   +  +   +L  
Sbjct: 120 SKLNPLPGFKRIFGPRALWEGTKMLIRSGIVALLVWLAVKSMLPLIGGLMPMSL--VLDQ 177

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                  ++  I +    L   D          K +MSK E+K E KQS G+P++K   +
Sbjct: 178 FASHALSMIRNIAVAGVLLGAADYLVQRKLMGKKTRMSKDEVKQEHKQSEGDPLLKGAIR 237

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
           S   +  R++MM     A +++ NPTH A+ALRY      AP +VA+G  +IA  +R+ A
Sbjct: 238 SRQLAASRNRMMADVPTADVVLVNPTHVAVALRYEPER-GAPRVVARGAGVIAAAIREKA 296

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            E  +P+  +  LAR+L+    +   IP   + AVAQ++  +  ++
Sbjct: 297 TEARVPLVRDVPLARALYTSTTVGQEIPTELFAAVAQVLAFVLSRR 342


>gi|16760489|ref|NP_456106.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141751|ref|NP_805093.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413607|ref|YP_150682.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168233617|ref|ZP_02658675.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168263746|ref|ZP_02685719.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463168|ref|ZP_02697099.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822292|ref|ZP_02834292.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194470706|ref|ZP_03076690.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197250158|ref|YP_002146621.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362531|ref|YP_002142168.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|213426013|ref|ZP_03358763.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213613054|ref|ZP_03370880.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647290|ref|ZP_03377343.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289827203|ref|ZP_06545926.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25322219|pir||AF0696 probable type III secretion protein ssaU [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502785|emb|CAD01943.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137379|gb|AAO68942.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56127864|gb|AAV77370.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|194457070|gb|EDX45909.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634165|gb|EDX52517.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094008|emb|CAR59504.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213861|gb|ACH51258.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205332387|gb|EDZ19151.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341285|gb|EDZ28049.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347621|gb|EDZ34252.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|320086100|emb|CBY95874.1| Secretion system apparatus protein ssaU [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 352

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|256376454|ref|YP_003100114.1| type III secretion exporter [Actinosynnema mirum DSM 43827]
 gi|255920757|gb|ACU36268.1| type III secretion exporter [Actinosynnema mirum DSM 43827]
          Length = 363

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 174/353 (49%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  +     TE P++KK+ DA  EG    + +   +  IL     L    +  +     
Sbjct: 1   MSGKNKDA--TEEPTAKKVRDAKREGRMARTPDLGTWLGILGATWTLPMTLTSLLDIGQG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +A      + +  V ++    L  +  V+P  L  ++  + +  +Q    ++ 
Sbjct: 59  LLKK---AAGFMAAPEPALAVAIVKDGVLDGALAVLPLSLTIIVATLVAAGLQGTLRMST 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              KP F +++  +GIK ++  ++L   +K+ +K  L+  ++ +S++    +++   + +
Sbjct: 116 KQFKPKFTQLNPLKGIKNMFGPHSLWEALKTLIKTSLLAGLLYVSVSGLVPSVVASGTLS 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++   A  T   +L +  +    + V+D   +  + + +LKM+KQE+KDE KQS G+P
Sbjct: 176 LAALTDVATGTAMSLLRLAAIGGLVMAVVDYAVAKRRIHKELKMTKQEVKDEHKQSEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   +S      R++MM     A +++ NPTH A+ALRY      AP +VAKG   IA
Sbjct: 236 QLKGAIRSKQMQMSRNRMMAEVPNADVVLVNPTHIAVALRYDPAR-GAPRVVAKGAGAIA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A EH +PI ++  LAR+L K   +   IP   +  VAQ++  ++  K
Sbjct: 295 TKIRELATEHRVPIVQDVPLARALHKACEVGHEIPFEMFGPVAQVLAFLHRLK 347


>gi|311695200|gb|ADP98073.1| flagellar biosynthesis protein FlhB [marine bacterium HP15]
          Length = 341

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/317 (25%), Positives = 157/317 (49%), Gaps = 1/317 (0%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
            + +LA    +L F +    S+ + +        +  + D+ H+   L   S  A+  + 
Sbjct: 1   MAVLLAGAGGMLMFGASLGASLEAIMRDSFV-IERSAIFDMRHMSVQLIESSKEAAWALS 59

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           P L+L ++  I   +     +++   V P   R+   +G+ R++S+ +L+  +K+  K+ 
Sbjct: 60  PILVLLLIAAIFGSIGIGGLLISGKAVAPKLNRMDPIKGLGRMFSMRSLIELVKAIAKVG 119

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYH 216
           LV  +  + L      +L          + H  +T+     ++      +  +D+ +  +
Sbjct: 120 LVMALAILILDLRTEDLLAIAEEPVVPAMEHVLWTIAWSFFLLSCATIIIAAIDVPFQIY 179

Query: 217 QWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYA 276
               KL+M+KQE+KDE K + G P +K + + + R   + +MM+    A ++ITNPTHYA
Sbjct: 180 DHQKKLRMTKQEVKDEYKDTEGKPEVKGKIRQLQREMAQRRMMQDVPTADVVITNPTHYA 239

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL+Y Q    AP++VAKG + +A K+ +IA E+ + I   P L R+++    I   IP 
Sbjct: 240 VALKYDQKAMAAPIVVAKGADEVAFKIMEIARENKVEILRTPPLTRAVYHNTDIGEEIPD 299

Query: 337 VFYKAVAQLIYKIYHKK 353
             Y A+AQ++  ++  +
Sbjct: 300 GLYMAIAQVLAYVFQLR 316


>gi|261246628|emb|CBG24438.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 352

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + +++F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEYKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|83594153|ref|YP_427905.1| flagellar biosynthesis protein FlhB [Rhodospirillum rubrum ATCC
           11170]
 gi|83577067|gb|ABC23618.1| Flagellar biosynthetic protein FlhB [Rhodospirillum rubrum ATCC
           11170]
          Length = 356

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 111/353 (31%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D  D+KTE PSS+K+  A  +G    S+E   F  +   L  +          V  
Sbjct: 1   MADDD-KDSKTEDPSSRKLGKAREDGQVAQSQEVKSFLMLGGALFMVAVMGGWIADKVAL 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + V L       L+ +     L   L      L +P + +F++  I   + Q   + + 
Sbjct: 60  RVRVFLEQPDTFHLDAVGLRDLLARLLLDIGLVLAMP-IAMFIVLAILGGVGQFGLIFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +++S   G KR++S+  LV  +K  VK+++V  I+   +     T   F+  +
Sbjct: 119 KKITPELQKISPLAGFKRLFSVRALVEGVKGIVKVVVVSAIVAALMLPRLRTPELFMDQD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +  +LI ++  +  +   D  +  ++   +LKM+KQE+KDE K + G+P
Sbjct: 179 ILVTLGQIHRLLVVLLISVVTIVGAIAAADFAFQKYKHIEELKMTKQEVKDEHKNAEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK++ + +   R R +MM     A+++ITNPTH+A+AL+Y      APVLVAKGQ+ IA
Sbjct: 239 QIKSKIRQLRMRRARERMMARVPEASVVITNPTHFAVALKYDMDMMSAPVLVAKGQDFIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R++A E+ +PI E P LAR+LF  V I+  IPP  YKAVA++I  +   K
Sbjct: 299 LKIREVAEENEVPIVENPPLARALFAAVEIDHEIPPDHYKAVAEVIGYVMRLK 351


>gi|62180013|ref|YP_216430.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127646|gb|AAX65349.1| Secretion system apparatus SsaU [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 352

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            L   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGLLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|56551546|ref|YP_162385.1| flagellar biosynthesis protein FlhB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543120|gb|AAV89274.1| type III secretion exporter [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 380

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 3/353 (0%)

Query: 1   MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+++D   D KTEAP+ K++ +   +G+   S+E  +  ++LA L + L      +Y + 
Sbjct: 1   MTDSDVDQDQKTEAPTQKRLREVAEKGDVLQSKELGIAFAMLASLAWFLMISHRMVYDLG 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
             L + L+               +   L            +L     I +  +       
Sbjct: 61  IMLKMGLS--FDFNAFSKFDPFSVFIRLITCIILPFSMLFVLMAFAAIAAPAVLGSLGFR 118

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +    +R++   G  R++ +  L    KS VK++L+G++    L +    ++     
Sbjct: 119 WEALNFKPERLNPIAGFSRVFGMQGLFELGKSIVKVLLIGSLGLWILWQRLPVIMQLGRH 178

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  + +         +++++ + +A +  +D+     +   +L+MSKQEIKDE KQ+ G+
Sbjct: 179 DLKAAINEIGHIFLILVLVMSVALAVVAAIDVPIQIFRRNRRLRMSKQEIKDEHKQTEGS 238

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK   +    +  R    +A   +T++ITNPTH+A+AL+Y   E+ AP++ AKG + +
Sbjct: 239 PEIKAAVRQRQIAVFRASNRKAVQDSTVVITNPTHFAVALKYKAGEDIAPIVTAKGIDEL 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A  +R++A E ++P+   P LAR+++        I    YKAVA ++  I+  
Sbjct: 299 ALALREMADESDVPVLHYPLLARAIYFTSNSGELIREELYKAVASILAFIFRL 351


>gi|200389631|ref|ZP_03216242.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602076|gb|EDZ00622.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 352

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 152/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +  +L     S    +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHVLIESLASVLLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + +++F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|284007636|emb|CBA73289.1| type III secretion inner membrane protein YscU,SpaS,EscU,HrcU,SsaU
           [Arsenophonus nasoniae]
          Length = 352

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 163/345 (47%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K++ +A  +G    S E      +   L YL+      +++   +L +L   
Sbjct: 6   EKTEKPTQKRMNEARKKGQVIKSNEIVTVLKMAVILGYLIVE-GHALFNAIGELIILTVR 64

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           +    ++  +  +  +    +   R ++  +++ ++    S ++Q  P+     +  SF 
Sbjct: 65  SLSLPIDVAAKTI--IGSFIMLLLRFMVGLVVVLIVTICLSCIVQTGPIWAHKSLAFSFN 122

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++++ +  K+I+S+ NL  F K+ +K+I++  +    L           +      +   
Sbjct: 123 KMNIIKNAKQIFSMKNLFEFGKNILKVIVLTLVFYYLLDYYVNLFQYLPTCGIDCGVMVT 182

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
           F  ++ +    L+      + D G+ Y+    +LKMSK++ K E K + GNP IK +++ 
Sbjct: 183 FTLIQWLWGGFLVCYIVFAIADYGFQYYHVMKELKMSKEDTKREFKDTEGNPQIKQKRRE 242

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I R    + ++    ++T+II NPTH  + L Y       P +V K Q+ +A  + K+A 
Sbjct: 243 IQREITSNSVVANVRKSTVIIRNPTHIVVCLYYQPGITPLPQVVEKFQDNMALHIVKLAE 302

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +  IP+ E   LAR+LF+QV     IP   ++ VA+L+  +   +
Sbjct: 303 KAGIPMVENILLARALFQQVETGQMIPESLFEPVAELLRLVMDLR 347


>gi|294675615|ref|YP_003576230.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB
           1003]
 gi|294474435|gb|ADE83823.1| flagellar biosynthetic protein FlhB [Rhodobacter capsulatus SB
           1003]
          Length = 362

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 167/348 (47%), Gaps = 1/348 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D   +K   P+ +KIE A  +G+   S E +  +   A +I  L F    + S  +
Sbjct: 1   MSEEDDS-SKEFDPTPQKIEQARKQGDLVKSTEVTGAAVYAAIVITALAFGKSSLESFGT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              VL+  A    ++ +     +  ++    +  V P LLL  +  + +   QR  V   
Sbjct: 60  WASVLIDQADSISVQLLGGGTVVAGNILGRMALTVAPWLLLPGVLVLAALAAQRAIVFAP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+      K+ +    L  F KSFVK++++  I+   +      +L      
Sbjct: 120 EKLMPKVNRIDPIANFKQKFGSTGLFEFAKSFVKLVVISIILGNFMLRELPAILLSQKFE 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +       + + L+++LL    +  +D  W    +  + KM+++E+ DE+KQS G+P
Sbjct: 180 ATVVAVSFPQMIVEFLLLMLLLAGVIAAIDYLWQRFDFLRRNKMTRKELTDEMKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK +++  A      +M+   ++A ++I NPTHYA+AL++ +    AP+ VAKG + +A
Sbjct: 240 HIKAQRRQKAIEIATKQMIADVAKADVVIVNPTHYAVALKWERGAKRAPLCVAKGVDEVA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
            ++R++A E  +PI  +P  AR+L+  V I   I P  Y+ VA  I  
Sbjct: 300 ARIREVAAEAGVPIHSDPPTARALYAAVDIGQEIHPDHYRPVAAAIRF 347


>gi|304414279|ref|ZP_07395647.1| type III secretion system apparatus protein [Candidatus Regiella
           insecticola LSR1]
 gi|304283493|gb|EFL91889.1| type III secretion system apparatus protein [Candidatus Regiella
           insecticola LSR1]
          Length = 353

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 152/342 (44%), Gaps = 3/342 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ KKI+DA  +G    S E +  + ++  LIY     +  I    + +   +  
Sbjct: 3   EKNEKPTPKKIKDAREKGQVIKSVEITSGAQLVVVLIYFTLTGNDLIDQAAALIRSSIEQ 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +Q        I    T L +  + ++   L++  +    S   Q  P+     +    +
Sbjct: 63  LSQPMNIAALRIGAEATALLMHITGILGGALIIITLLMGIS---QIGPLWAPKALSIKGE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++    ++ + S  +L    KS +KI+ +  I    L+    T            +   
Sbjct: 120 RINPINNLRNLISFRSLFELGKSLIKIVSLSLIFGYLLSRYAPTFGYLSYCGSVCAMPVF 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +L  ++       +LD  +  H    +LKMS +EIK E K S G+P IK +++ 
Sbjct: 180 GTLMSWLLGSLIACYLLFALLDYSFQRHSVMKQLKMSPEEIKREYKDSEGDPHIKQKRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +      +    +R+T ++ NPTH+A+ L Y   E   P+++ KG + +AK + K+A 
Sbjct: 240 LQQQIQSGSLSTNVNRSTAVVRNPTHFAVCLFYHPEEAPLPIVLEKGHHEMAKTIIKMAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
              +P+ E  +LAR+L++ V   + IP   ++ VA L+  + 
Sbjct: 300 RAGVPVIENVALARALYRDVDCGNTIPEKLFEPVATLLRMVL 341


>gi|198243973|ref|YP_002215710.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938489|gb|ACH75822.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623457|gb|EGE29802.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 352

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +  +L     S    +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHILIESLASVLLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|51594685|ref|YP_068876.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893688|ref|YP_001870800.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587967|emb|CAH19570.1| putative type III secretion apparatus protein EscU/SsaU/YscU
           [Yersinia pseudotuberculosis IP 32953]
 gi|186696714|gb|ACC87343.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 355

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 155/341 (45%), Gaps = 5/341 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+
Sbjct: 2   STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALI 57

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            S+  +  + ++  +  +    ++    +V+      ++  I + + Q  P+L    V  
Sbjct: 58  RSSIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSF 117

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  +  K+++S+ ++   MKS +K+ ++  I    L +   +            L
Sbjct: 118 KGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCAL 177

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  +L  ++      +++D  +  +    +LKMS  E+K E K S G+P IK +
Sbjct: 178 PVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQK 237

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG +  A  +  
Sbjct: 238 RRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVS 297

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 298 LAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338


>gi|304312007|ref|YP_003811605.1| Translocation protein in type III secretion [gamma proteobacterium
           HdN1]
 gi|301797740|emb|CBL45962.1| Translocation protein in type III secretion [gamma proteobacterium
           HdN1]
          Length = 358

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 179/348 (51%), Gaps = 5/348 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E  +    TE P+ K+IEDA  +GN   S++       L   +++             
Sbjct: 1   MAEKQSDQ--TELPTPKRIEDARRDGNVSRSQDLGKT---LLIPVWIGLLGGLLPVLFQR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +H +  +      ++++ ++  +   +     +++P +      G+    +Q   VL L
Sbjct: 56  WIHYVRTTWQNLPPDNLNGLLDAMMSGAGVFLAILLPLIFFAAAIGVFIEFVQVGKVLAL 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             VKP   R++   G+KR++S  N V   KS  K  L+  +  I L +     L     +
Sbjct: 116 KPVKPDLNRLNPAAGLKRMFSQRNFVELAKSVGKSSLIILLSMIVLRDQLGDTLKLPYGS 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++    + T+R +LI + +    +  +D+ +  + W   L MS+++I+ E K S G+P
Sbjct: 176 HETLFAVLWLTLRAMLISVTIAFLLIAAMDVAYQKYAWTKDLMMSRRDIQQEHKNSEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K +++++ +   +   M +   A++++TNPTHYA+A+ Y + + D P++VAKG++  A
Sbjct: 236 MLKGQRRALHQEWSQENAMGSVRGASVVVTNPTHYAVAIHYEKGKTDLPLVVAKGEDYFA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           + +R+ A E  +PI E   LAR+L++ + +++ I   F++AVAQL++ 
Sbjct: 296 RMIREAAQEAGVPIMENVDLARALYRDIDVHNPITSEFFEAVAQLLHW 343


>gi|170026112|ref|YP_001722617.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis YPIII]
 gi|169752646|gb|ACA70164.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis YPIII]
          Length = 355

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 155/339 (45%), Gaps = 5/339 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 4   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +  +  + ++  +  +    ++    +V+      ++  I + + Q  P+L    V    
Sbjct: 60  SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++  +  K+++S+ ++   MKS +K+ ++  I    L +   +            L  
Sbjct: 120 ERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLIQYAPSFGYLTHCGSRCALPV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  +L  ++      +++D  +  +    +LKMS  E+K E K S G+P IK +++
Sbjct: 180 FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            +              R+T ++ NPTH+A+ L Y   E   P+++ KG +  A  +  +A
Sbjct: 240 QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 300 EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338


>gi|167551609|ref|ZP_02345363.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168240935|ref|ZP_02665867.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194445677|ref|YP_002040673.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451297|ref|YP_002045425.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194404340|gb|ACF64562.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409601|gb|ACF69820.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205323578|gb|EDZ11417.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205339685|gb|EDZ26449.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 352

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 151/343 (44%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +  +L     S    +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHVLIESLASVLLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|226225721|ref|YP_002759827.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27]
 gi|226088912|dbj|BAH37357.1| flagellar biosynthesis protein FlhB [Gemmatimonas aurantiaca T-27]
          Length = 366

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 181/354 (51%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+++   KTE  S K++E+A  +G    S E +  + +L  L+   F        +  
Sbjct: 1   MAESESGGEKTEEASGKRLEEAREKGQIAKSPEFATAAFLLGFLLVFSFTGPQLWRFLLD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   LA+A   +    + ++  +  +S      ++  +    +  +     Q   +L  
Sbjct: 61  TMGTSLATAGDSE-HMGAGLIPWMQVISFRTIVAMLGAVAAMAVVAVAVQAAQTGGLLTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF-ISA 179
             + P F+R++      RI    ++V   K+ +K+++VG  + +++++ +  +    ++A
Sbjct: 120 KTLAPKFERLNPMSNAGRILGKQSIVELAKALLKMMIVGYAVYMTVSDAWPDLQALALNA 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P ++L         ++    +    L + D G+   +    LKM+KQE+K+E K   GN
Sbjct: 180 SPMALLEVVQKYGFALIKNAGMMFLVLAMADYGYQRWKTMEDLKMTKQEVKEEHKSQEGN 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K R+++IAR RIR +M  A  +A +II NP H A+A++Y      AP +VA G+  I
Sbjct: 240 PEVKGRRRAIARERIRRQMFAAVPKADVIIVNPVHIAIAIKYDPNVAPAPYVVALGERKI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A++++++A++H +P+ E   LAR+L K   + + IP   Y AVA+++  +  ++
Sbjct: 300 AQRIKELAFQHGVPVIENKPLARALIKVAKVGTVIPVEMYLAVAEVLAFVMRQR 353


>gi|260222456|emb|CBA32037.1| hypothetical protein Csp_D30120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 384

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 163/350 (46%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
                ++    S +K++ A ++G    S++ S  + + A  + +L   SP ++       
Sbjct: 2   EQGSQDRNLPASERKLKKARDDGQVSRSQDLSHLAVLGAGAVAVLSL-SPILFEQLKLSM 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           V   S     +     +V  L   S   +   +    + M   I + +     V +L  +
Sbjct: 61  VQQLSFDAETVRRTGTMVQRLGDASTIGTAGCVAFAAIVMTAAILAAVASGGWVSSLKPL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P F R++   G   ++S   L++  K  +   ++  I  + L      M   +     +
Sbjct: 121 MPDFSRLNPLSGFANLFSKKKLLDTAKMALMTAILFVIAGLFLKSGMQEMAAMLLQPSPA 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            + H    +   L ++LL I    ++D+         ++KMS QE+K+E K+S GNP +K
Sbjct: 181 AISHLTQWMTGGLGLMLLVILLAAMVDVPLQLFLHKDQMKMSHQEVKEEGKESDGNPQLK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            + +   R   +   + A  +A  ++ NPTH+A+A+RY +    AP +V+KG +L+A K+
Sbjct: 241 GKIRQKQREMAQKSSVGAVPKADFVVMNPTHFAVAIRYDEASMRAPRVVSKGADLLAMKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R +A +H+IP+ + P LAR+L+    ++  IP   Y AVAQ++  +Y  +
Sbjct: 301 RDVAKQHSIPVLQSPMLARALYANAELDQDIPSTLYTAVAQVLAYVYRLR 350


>gi|149203120|ref|ZP_01880091.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035]
 gi|149143666|gb|EDM31702.1| flagellar biosynthetic protein FlhB [Roseovarius sp. TM1035]
          Length = 362

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 2/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +   +KT   +  K+++A  +G    S + +   +    L+ L       + +V +
Sbjct: 1   MAEQNDDSDKTLEATQHKLDEARKKGEFARSADLNTVGTYAGLLLALSLASGTPVETVGA 60

Query: 61  DLHVLLASATQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           +L  L+  + Q    +         L  ++      +   LLL M+  + + + QR  V+
Sbjct: 61  NLMTLVEHSDQLAKLIFQGGLGASALGGIAAQIVFGLSLFLLLPMVMALAAVIAQRAFVV 120

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               ++P   R++  E  K  +    L  F KSF K+ L   ++   LT     M+  + 
Sbjct: 121 APTKIEPRVSRINPVENAKNKFGATGLFEFAKSFGKLFLYSLLLGGFLTYRLPEMMSTLH 180

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           A    I       + + +I++LL    +  LD  W Y     + +MS ++++DE+KQ+ G
Sbjct: 181 AEAPIIGAVMGKLIIEFMIIVLLISLAIGGLDYLWQYFDHLRRQRMSHKDLRDELKQNDG 240

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K +++  A      +MM     A ++I NPTH+A+AL++ +    AP  VAKG + 
Sbjct: 241 DPAVKQQRRRRAMELASGRMMADVPTADVVIVNPTHFAVALKWSRKPGAAPTCVAKGMDH 300

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           IA  +R +A E  +PI E+   AR+L     I   I P  Y AVA  I  
Sbjct: 301 IALAIRDLARESGVPILEDAPTARALHATTEIGREIDPAHYAAVAVAIRF 350


>gi|167576637|ref|ZP_02369511.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           TXDOH]
          Length = 379

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 162/353 (45%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  L+      +    +
Sbjct: 1   MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKILVLLAPSWLAEFRA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              + L   T       +    L   L+L   +++ P  ++ +   +GS L+    +L+ 
Sbjct: 60  LFLLDLVDVTGDGALANAWSAALPASLAL-FLKMIAPFFVVPLCVVLGS-LLPGGWMLSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            H+KP F R++    + R+ S  +   F  S +K + +  ++           L      
Sbjct: 118 AHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAFLRLQHLP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L   F       + +   +    + D+ +    +    +M+KQE+KDE K + G P
Sbjct: 178 LQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIAKGVDDMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 298 LAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|145297440|ref|YP_001140281.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850212|gb|ABO88533.1| lateral flagellar biosynthetic protein, LfhB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 378

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+N A D KTE  SS+K+  A  EG    S+E S    +L   + +  +  P      +
Sbjct: 1   MSQNSAQD-KTEEASSQKLRKAREEGQIARSKELSSAGLLLLGGLAMQ-WMVPSFGHFFA 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L         +   D   ++       LS   +++P      +  +   ++    VL  
Sbjct: 59  ELMKRPQRFDWQGARDPQMMIHWTAEALLSMLWVLLPLFGFLALLLVLLSIVPGGMVLTW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + PS ++++  +G+KR+ S ++L+  +KS +KI+L+G+ + + L   +  ++      
Sbjct: 119 KKLLPSAEKLNPLKGLKRMLSTHSLMELLKSVLKILLIGSTLALMLQHQWPLLMMMNRMP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P + +  A   + +  I++      + VLD+ +       +L+M+KQE+KDE K S G P
Sbjct: 179 PQAAMEQALQILSQAFILLGSVQMLIAVLDVPYQRWSLNKQLRMTKQEVKDEHKNSEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +     R ++ +   +A +II N THYA+A++Y     +AP ++AKG + +A
Sbjct: 239 EIKAKIRQVQGMLARARIEQRVPQADVIIVNTTHYAVAIKYDPERANAPYVIAKGVDGMA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R++A +H+  +   P L R+++    ++  +P   Y AVA ++  +   +
Sbjct: 299 ERIRQVAKQHDKMVMSLPDLTRAIYYSTRVDQEVPAGLYTAVAYVLNHVLQLR 351


>gi|108809999|ref|YP_653915.1| secretion system apparatus protein SsaU [Yersinia pestis Antiqua]
 gi|108813554|ref|YP_649321.1| secretion system apparatus protein SsaU [Yersinia pestis Nepal516]
 gi|145600944|ref|YP_001165020.1| secretion system apparatus protein SsaU [Yersinia pestis Pestoides
           F]
 gi|150260678|ref|ZP_01917406.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|162421928|ref|YP_001608225.1| secretion system apparatus protein SsaU [Yersinia pestis Angola]
 gi|165926775|ref|ZP_02222607.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936397|ref|ZP_02224965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010522|ref|ZP_02231420.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213930|ref|ZP_02239965.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402227|ref|ZP_02307700.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167426123|ref|ZP_02317876.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467562|ref|ZP_02332266.1| type III secretion protein, YscU/HrpY family [Yersinia pestis FV-1]
 gi|218927480|ref|YP_002345355.1| secretion system apparatus protein SsaU [Yersinia pestis CO92]
 gi|229836528|ref|ZP_04456694.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|229840136|ref|ZP_04460295.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842217|ref|ZP_04462372.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904044|ref|ZP_04519157.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|270488971|ref|ZP_06206045.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27]
 gi|294502345|ref|YP_003566407.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
 gi|108777202|gb|ABG19721.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
 gi|108781912|gb|ABG15970.1| putative type III secretion apparatus protein [Yersinia pestis
           Antiqua]
 gi|115346091|emb|CAL18959.1| putative type III secretion apparatus protein [Yersinia pestis
           CO92]
 gi|145212640|gb|ABP42047.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
 gi|149290086|gb|EDM40163.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|162354743|gb|ABX88691.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           Angola]
 gi|165915513|gb|EDR34122.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921398|gb|EDR38622.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990612|gb|EDR42913.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204905|gb|EDR49385.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167048408|gb|EDR59816.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054834|gb|EDR64636.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679814|gb|EEO75917.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|229690527|gb|EEO82581.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696502|gb|EEO86549.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706212|gb|EEO92220.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|262364375|gb|ACY60932.1| putative type III secretion apparatus protein [Yersinia pestis
           D182038]
 gi|270337475|gb|EFA48252.1| secretion system apparatus protein SsaU [Yersinia pestis KIM D27]
 gi|294352804|gb|ADE63145.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
          Length = 355

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 155/341 (45%), Gaps = 5/341 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+
Sbjct: 2   STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALI 57

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            S+  +  + ++  +  +    ++    +V+      ++  I + + Q  P+L    V  
Sbjct: 58  RSSIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSF 117

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  +  K+++S+ ++   MKS +K+ ++  I    L +   +            L
Sbjct: 118 KGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCAL 177

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  +L  ++      +++D  +  +    +LKMS  E+K E K S G+P IK +
Sbjct: 178 PVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQK 237

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG +  A  +  
Sbjct: 238 RRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVS 297

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 298 LAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 338


>gi|83716504|ref|YP_438366.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           E264]
 gi|167614812|ref|ZP_02383447.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           Bt4]
 gi|257141397|ref|ZP_05589659.1| flagellar biosynthesis protein FlhB [Burkholderia thailandensis
           E264]
 gi|83650329|gb|ABC34393.1| flagellar biosynthetic protein FlhB [Burkholderia thailandensis
           E264]
          Length = 379

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 162/353 (45%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  L+      +    +
Sbjct: 1   MASQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKILVLLAPSWLAEFRA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              + L   T       +    L   L+L   +++ P  ++ +   +GS L+    +L+ 
Sbjct: 60  LFLLDLVDVTGDGALANAWSAALPASLAL-FLKMIAPFFVVPLCVVLGS-LLPGGWMLSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            H+KP F R++    + R+ S  +   F  S +K + +  ++           L      
Sbjct: 118 AHLKPKFSRLNPVTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLTAFLRLQHLP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L   F       + +   +    + D+ +    +    +M+KQE+KDE K + G P
Sbjct: 178 LQEALKRGFDLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPGADVVVVNPTHYAVALKYDANRAEAPFVIAKGVDDMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 298 LAIRRIAEEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|283782110|ref|YP_003372865.1| type III secretion exporter [Pirellula staleyi DSM 6068]
 gi|283440563|gb|ADB19005.1| type III secretion exporter [Pirellula staleyi DSM 6068]
          Length = 363

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 182/350 (52%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D    K+   +  + + A  EG    S++ +  + +    + LL++FS G++ +     
Sbjct: 2   DDDNGEKSHEATQHRRDKAREEGQVVKSQDLTSAAML-MACLLLLWYFSSGMFELVGAFT 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
               +    +   ++ +      +    +R ++P LL+ M+  I   L Q   +   N +
Sbjct: 61  RDQITGQLWQPITLADVTSDFARIGGLLARTLLPLLLMMMLAAITIQLSQTGFLFLPNKL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
               +R++     KRI++++NLV+     +K++L+G +  +SL +   T+L+    +   
Sbjct: 121 AMDLERINPLNNSKRIFAVSNLVSLGFGLLKVLLIGVVAGLSLWQQRATILELTDQSAAV 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I      T     I I   +  L +LD G+ + +    L+M+ Q++++E+K+  G+P   
Sbjct: 181 IGKFVLETALWTSIKIAAALLVLAILDYGYQWWKHEQDLRMTTQQVREEMKEQTGDPQTM 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R+K I R  + +++  +  +A +I+TNPT  A+AL+Y      AP+++AKG  ++A+++
Sbjct: 241 QRRKQIQRQLVMNRLSTSIPKADVIVTNPTELAIALQYDPNTMPAPIVIAKGAGVLAQRI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R++A E+N+P+ E   LAR+L++ V +N  +P   Y AVA+++  +Y  K
Sbjct: 301 RRLALENNVPVVERKELARALYQLVEVNQPVPSEQYAAVAEVVRYVYQLK 350


>gi|153948750|ref|YP_001402765.1| secretion system apparatus protein SsaU [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960245|gb|ABS47706.1| type III secretion protein, YscU/HrpY family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 356

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 155/341 (45%), Gaps = 5/341 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+
Sbjct: 3   STEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALI 58

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            S+  +  + ++  +  +    ++    +V+      ++  I + + Q  P+L    V  
Sbjct: 59  RSSIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSF 118

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             +R++  +  K+++S+ ++   MKS +K+ ++  I    L +   +            L
Sbjct: 119 KGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCAL 178

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  +L  ++      +++D  +  +    +LKMS  E+K E K S G+P IK +
Sbjct: 179 PVFSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQK 238

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++ +              R+T ++ NPTH+A+ L Y   E   P+++ KG +  A  +  
Sbjct: 239 RRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVS 298

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 299 LAEQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339


>gi|170748648|ref|YP_001754908.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655170|gb|ACB24225.1| flagellar biosynthetic protein FlhB [Methylobacterium radiotolerans
           JCM 2831]
          Length = 355

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 103/340 (30%), Positives = 177/340 (52%), Gaps = 2/340 (0%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           PS ++++ A+  G+   S E + F+ + A  + LL        ++   L   LA+A    
Sbjct: 14  PSQRRLDQAIERGDVATSTEINTFAMLGAFTLALLVAAPTIATNLLHGLKAYLANAHALP 73

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
            +  +    +   L L    + +P + L ++ G+ + L+Q   V +   + P F R+S  
Sbjct: 74  DDAAAMKAAMTRGLWLWLQAVAVP-VGLAVVAGLAAGLLQHPLVFSAETLMPKFSRLSPM 132

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            G+KR+  +  L  F K   KI  VG +  + L  +   +  F   +P + +        
Sbjct: 133 AGVKRLLGVEALFQFGKGLAKIAAVGVVGAVMLWNDRDRLEVFARLDPAASMPAILSLSL 192

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
           K+L  +L     +T+ D  ++  +W  + +MSK+E+K E+K+S GNP +K R K +  +R
Sbjct: 193 KLLAGMLCMHLAITLGDALYARFRWRKRHRMSKEELKQEMKESEGNPEVKGRLKQLRMAR 252

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
           ++ +MM A   AT+++TNPTHYA+ALRY      APV VAKG + +A ++R +A EH + 
Sbjct: 253 VKKRMMAAVPTATVVVTNPTHYAVALRYETG-MAAPVCVAKGVDALALRIRAVAAEHGVA 311

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + E P LAR+L   V I+  IP   Y+AVA++I  +   +
Sbjct: 312 VIENPPLARALHATVEIDREIPAEHYRAVAEVIGFVLRLR 351


>gi|148553141|ref|YP_001260723.1| flagellar biosynthesis protein FlhB [Sphingomonas wittichii RW1]
 gi|148498331|gb|ABQ66585.1| type III secretion exporter [Sphingomonas wittichii RW1]
          Length = 379

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 168/352 (47%), Gaps = 2/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D KTEAP+ K+ +DA  +G+   SRE      ++    ++       + ++  
Sbjct: 1   MAEGPEDDEKTEAPTPKRRQDAAEKGDVLQSRELGTALVMVVGAGWIAIAGPWAMAALKR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L S     +E+   +   L  ++  A  L++   L          ++  +     
Sbjct: 61  MLSNAL-SFDAGAIENFDPLSAALAMVATVALPLLLLFALTLAAAIAAPAMLGSLG-FRW 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +     +++   G+KRI+ +  L+   KS +KI+ +G +    L +    ++     +
Sbjct: 119 SALGFKANKLNPMAGLKRIFGMQGLIELGKSLLKILALGAVGYWLLMDRIAAIVTMGQQD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L     T    ++++ L +A +   D+     Q   +L+MSKQEIK+E KQ+ G+P
Sbjct: 179 LRTALDSLGSTFVFAVLVMTLALAVVAGADVPMQMFQRGKRLRMSKQEIKEESKQTEGSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   +    +       +A   AT+++TNPTH+A+ALRY    + APV++A+G+   A
Sbjct: 239 ELKAAIRQKQMAAAMGSARKAVVEATVVLTNPTHFAVALRYRPGFDTAPVVLARGRGATA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           + +R++A E+++P+   P L R+++        I    + AVA ++  +++ 
Sbjct: 299 QAIRELATENSVPMLHYPQLTRAIYYTSRSGQVIREDLFIAVAAILAFVFNL 350


>gi|213854181|ref|ZP_03382713.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 352

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 150/343 (43%), Gaps = 3/343 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +       ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLG---AEVIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + IP+ E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 342


>gi|213581364|ref|ZP_03363190.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 338

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 150/338 (44%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA 
Sbjct: 240 MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            + IP+ E   LARSLF +V     IP   ++ VA L+
Sbjct: 300 RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALL 337


>gi|256831232|ref|YP_003159960.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM
           4028]
 gi|256580408|gb|ACU91544.1| flagellar biosynthetic protein FlhB [Desulfomicrobium baculatum DSM
           4028]
          Length = 355

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 176/354 (49%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D    +TE  + K+   A  +GN P S+E     ++L  L+ L  +       + +
Sbjct: 1   MAQHDPS--RTENATPKRRNKARGQGNVPKSQELPKPLTLLFGLLMLQLYLGTIRTEIEN 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +H         +L   + +  L      S S +V+P +++  +       +Q   +   
Sbjct: 59  LMHWFFTEGFVFEL-TPASVYTLFRDCLYSISLMVLPIMIVIAVAAFIVVRLQVGKLWAP 117

Query: 121 NHVKPSFKRVSLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              KP FK  ++  G+K++  S    V   KS      V     I L + +  ++     
Sbjct: 118 KVFKPQFKMFNVLSGLKKLLISKQTFVRLAKSIFMAAAVAIGPYIVLKQAFGEVIPLFYQ 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              SI  +   + + +    L  +  + + D+ ++   +   LKM+K E+KDE KQ+ G+
Sbjct: 178 PAESIAAYVLKSGQTMFYYALTPMILIGIADLLYTRWDYEENLKMTKSEVKDERKQAEGD 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK++Q+    + +  +MM+   +A ++ITNPTH A+A+RY   E  AP+++AKG   +
Sbjct: 238 PAIKSKQRQKMMAVMMRRMMQDVPKADVVITNPTHLAIAIRYNAMEAPAPMVLAKGAGAV 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A++++ IA E+N+PI E   LAR+L+K + +   IP  FY+AVA ++ +IY  K
Sbjct: 298 AQRIKDIARENNVPIRENKPLARALYKVIEVGDTIPEEFYQAVAAILAQIYKTK 351


>gi|22124447|ref|NP_667870.1| secretion system apparatus protein SsaU [Yersinia pestis KIM 10]
 gi|45440283|ref|NP_991822.1| secretion system apparatus protein SsaU [Yersinia pestis biovar
           Microtus str. 91001]
 gi|167418837|ref|ZP_02310590.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|21957234|gb|AAM84121.1|AE013654_10 putative type III secretion system component [Yersinia pestis KIM
           10]
 gi|45435139|gb|AAS60699.1| putative type III secretion system component [Yersinia pestis
           biovar Microtus str. 91001]
 gi|166962831|gb|EDR58852.1| type III secretion protein, YscU/HrpY family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
          Length = 356

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 155/339 (45%), Gaps = 5/339 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 5   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +  +  + ++  +  +    ++    +V+      ++  I + + Q  P+L    V    
Sbjct: 61  SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG 120

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++  +  K+++S+ ++   MKS +K+ ++  I    L +   +            L  
Sbjct: 121 ERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPV 180

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               +  +L  ++      +++D  +  +    +LKMS  E+K E K S G+P IK +++
Sbjct: 181 FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR 240

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            +              R+T ++ NPTH+A+ L Y   E   P+++ KG +  A  +  +A
Sbjct: 241 QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA 300

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +  IP+ E  +LAR+L + V     IP  F++ VA L+
Sbjct: 301 EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALL 339


>gi|254488460|ref|ZP_05101665.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101]
 gi|214045329|gb|EEB85967.1| flagellar biosynthetic protein FlhB [Roseobacter sp. GAI101]
          Length = 361

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+   +++K+ +A  +G+   S +    +      +   +  S GI  +++
Sbjct: 1   MSGEDDDSDKSFEATAEKLLEARRKGDIAKSTDLMTAAGYAGLFVAFAYVGSEGIALIST 60

Query: 61  DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L VLL    +   +          + L +S     +P  LL  +  + +   QR  V  
Sbjct: 61  ALMVLLDQPDRLIDIFFDGSAAAPASGLIISIILPALPIFLLPAIAVLVAIAAQRAFVFA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + + P   R+SL    K  +  N L  F KSF K+ +    + + +  N   M+  +  
Sbjct: 121 PSKIAPKLSRISLISNAKNKFGRNGLFEFAKSFFKLCIYSICLVLFIRANLHEMIAALQT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +P S +          L++ +L  AT+  +D  W + +   K +MS++EI+DE K S G+
Sbjct: 181 DPASAISLMIEICLSFLLVTILISATIGGIDALWQHFEHLRKNRMSRKEIQDEQKNSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  ++  A    + +MM    +A +II NPTHYA+AL++ +   +APV VAKG + I
Sbjct: 241 PHLKQERRQRAMIVSQSQMMADVPKADVIIVNPTHYAVALKWSRLPGEAPVCVAKGVDEI 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           AK +R    E  +P+  +P  AR+L     I   I P  ++AVA  I  
Sbjct: 301 AKAIRLKGAEAGVPLHSDPPTARALHATTDIGDMIAPEHFQAVAAAIRF 349


>gi|54124949|gb|AAV30217.1| AscU [Aeromonas hydrophila]
          Length = 352

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 176/347 (50%), Gaps = 3/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KK+ DA N+G    S+E    + IL+ +  L+      +  +   + +  
Sbjct: 2   SGEKTEQPTAKKLRDARNKGQVVKSKEVVSTAIILSLVGMLMAMSDYYLEHLGKLMLIPE 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +       + ++H+V    +L    + L IP L +  +  + S++ Q   +L+   +KP 
Sbjct: 62  SHLNLPFSQALNHVV---ENLLQELAYLCIPILAVSALVVLVSHIAQYGFLLSGESIKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K+++  EG K+I+SI +L+ F+KS +K+ L+  ++ +++  N   ML         I  
Sbjct: 119 IKKINPVEGAKKIFSIKSLMEFVKSLLKVSLLSLLVWVTIEGNLQAMLQLPGCGMSCIPP 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + +++ +  +    + + D  + +HQ   +LKMSK E+K E K+  G+P +K+++
Sbjct: 179 VLGGMLGQLMAVCAMGFVVIAIADYAFEHHQHIKQLKMSKGEVKREYKEMEGSPEVKSKR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +      M     R+++I+ NPTH A+ +RY + E   PV+  K  +  A  + KI
Sbjct: 239 RQFHQELQPSNMRADVKRSSVIVANPTHIAIGIRYGRGETPLPVVTLKFTDAQALLVCKI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E  IP+ +   LAR+L++   IN+ IP    +A A+++  +   +
Sbjct: 299 AEEEGIPVLQRIPLARALYRDALINNYIPADQIEATAEVLRWLEQWR 345


>gi|160896049|ref|YP_001561631.1| type III secretion exporter [Delftia acidovorans SPH-1]
 gi|160361633|gb|ABX33246.1| type III secretion exporter [Delftia acidovorans SPH-1]
          Length = 391

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 172/349 (49%), Gaps = 1/349 (0%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D+  +K+   + +K++   ++G    SR+ S  + +    + +L    P I  +   L  
Sbjct: 2   DSSQDKSLPATERKLQKTRSDGQGARSRDLSHLAILGTGALMMLMGAEPLIQHLRMALAQ 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            LA       +  + ++  +  +     ++ +    +     + S ++    +L+L  ++
Sbjct: 62  QLA-FDAHTAKTPALMMERMLSMGSLGLKISLVVAAVTTGAALVSGMLAGGWILSLKPIQ 120

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P F R++   G+  ++S   +V  +K  V   ++  +    L+ +   +    S      
Sbjct: 121 PQFNRLNPLSGLTNLFSKQQMVTVVKMVVMTAILSFVAWKFLSSHLAEIAAISSQPSAMA 180

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L      +   + ++LL +  + V+D+    + + S+LKMS +E+K E K+S GNP IK+
Sbjct: 181 LSMTGQWLASGVALLLLVVFLMAVIDVPLQAYLFKSRLKMSHEEVKQEHKESDGNPQIKS 240

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           + +   R       + A  RA  ++TNPTHYA+ALRY +    AP +++KG +L+A K+R
Sbjct: 241 KIRQKQREIADRASVNAVPRADFVVTNPTHYAVALRYDEKTMAAPQVISKGTDLVALKIR 300

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++A  H IP+ E P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 301 EVAGAHKIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLK 349


>gi|317153078|ref|YP_004121126.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2]
 gi|316943329|gb|ADU62380.1| type III secretion exporter [Desulfovibrio aespoeensis Aspo-2]
          Length = 353

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 177/355 (49%), Gaps = 6/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++ +   KTE  ++K+ +   NEGN P S E +    +L  ++ L             
Sbjct: 1   MAQDPS---KTEKATTKRRKRTRNEGNVPKSSELTKAIVLLMGVLTLRSLIGFYQDQFIE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                       KL D S    L        + +V+P L +       +  +Q   +   
Sbjct: 58  IYEWTFREGIHTKL-DPSTTYALFVWGVKKLAIIVLPLLFVLAFTAWLTLRLQVGGLWTT 116

Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
             +KP F ++ ++  G+KR+  S    V   +S ++ + VG    I + +    +L    
Sbjct: 117 KPMKPKFAKMFNIVAGLKRLLISPQAFVRLGRSILQALAVGIAPYIVIKQELPNLLPLFH 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           A+ H I+ +      K+    L+ +  + + D+ +S  ++   +KM+K EIKDE +Q+ G
Sbjct: 177 ASTHGIIAYILGVGYKMACYALVPMLLIAIADLWYSRWKYEEGIKMTKDEIKDERRQAEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK +Q+      +  +M +   +A ++ITNPTH+A+AL+Y      AP+++AKG N 
Sbjct: 237 DPHIKRKQQQKMLQMMASRMFKDIPKADVVITNPTHFAVALQYDALVAPAPLVLAKGVNR 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A++++++A E++IPI   P LAR+L+KQV I   IP   ++AVA ++ K+   K
Sbjct: 297 VAERIKEVARENSIPIEVNPPLARALYKQVEIGETIPEEMFQAVAAILAKLDKFK 351


>gi|46200838|ref|ZP_00207865.1| COG1377: Flagellar biosynthesis pathway, component FlhB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 324

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 180/320 (56%), Gaps = 1/320 (0%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             +++S++  L+ +  F       +   L   +       +E  S +  LL+ +++   +
Sbjct: 1   MKMWASLVGALVIITLFAPYMARDMGRLLLPFIEHPHAFPMEQ-SDVGNLLSMITMDMLK 59

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           +++  +++ ++  + S + Q   +   + +   F ++S  +GI RI+S  NLV F KS  
Sbjct: 60  ILVLPMMMLVVLALVSAMGQSGLMFLPDKLTMDFSKLSPMKGITRIFSGRNLVEFAKSLF 119

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           K+  +G +I + L  +        + +  ++L +    V  ++++++L +  L   D  +
Sbjct: 120 KVSAIGFVIFLVLKSHMSEYAGLAALDLMAVLDYMRHQVIAMIMIVVLMVFVLAAADWFY 179

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
               +  ++KM+KQEIKDE KQ+ G+P+IK R +++   R R +MM A  +A++++TNPT
Sbjct: 180 QRWAFNQQMKMTKQEIKDEHKQTEGDPMIKGRLRALRMQRARQRMMAAVPKASVVVTNPT 239

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
           HYA+AL+Y Q    APVLVAKG +LIAK++R +A E+ +PI E P LAR+L+  V ++  
Sbjct: 240 HYAVALQYDQDSMGAPVLVAKGVDLIAKRIRDLATENEVPIVENPPLARALYATVELDEE 299

Query: 334 IPPVFYKAVAQLIYKIYHKK 353
           IPP  YK VA++I  +   K
Sbjct: 300 IPPEHYKTVAEIIGYVMKLK 319


>gi|170743254|ref|YP_001771909.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
 gi|168197528|gb|ACA19475.1| flagellar biosynthetic protein FlhB [Methylobacterium sp. 4-46]
          Length = 353

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 178/353 (50%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+     +++TE P+ K+++DA+  G+   S E +    +    + LL         +  
Sbjct: 1   MAGEGEQEDRTEEPTQKRLDDAIKRGDVATSTEINTLLLLGGFTLVLLVGAGSIARGLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L  LLA   Q    D +    L      + +  +   +   +   +   L+Q   V   
Sbjct: 61  ELRDLLAGLHQVP-GDAAGYAALARRALAALALALAAPVGAAVAAALVGGLLQHPLVWTT 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   ++RVS   G+KR++       F K  +K+ LVGT+  + L  +   +       
Sbjct: 120 ETLGAKWERVSPAAGLKRLFGPEAWFQFGKGILKVALVGTVAALVLWGDRDRLDALARLE 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P ++L      V +++  IL     + + D  +   +W ++L+M+K EIK+E+K+S G+P
Sbjct: 180 PSALLPATLALVLRLMAGILAAYLVIALGDAAYQRLRWRARLRMTKAEIKEEMKESEGSP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I  +R + +MM A   AT+++ NPTH+A+AL Y      APV VAKG +++A
Sbjct: 240 EVKARLRRIRATRAKKRMMAAVPGATVVVANPTHFAVALLYETG-MAAPVCVAKGVDVLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A E+ +P+ E P LAR+L   V I+ AIP   YKAVA++I  +  ++
Sbjct: 299 LRIRALAAENGVPVVENPPLARALHATVEIDQAIPTEHYKAVAEVIGFVLRQQ 351


>gi|162147444|ref|YP_001601905.1| flagellar biosynthetic protein flhB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545554|ref|YP_002277783.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786021|emb|CAP55603.1| putative flagellar biosynthetic protein flhB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533231|gb|ACI53168.1| type III secretion exporter [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 358

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 170/353 (48%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      K++ P+ K++E A  EGN   SRE  + + +   L+      +       +
Sbjct: 1   MAEGSGGGEKSQDPTGKRLETAREEGNVAQSRELLMLAILGGFLLVFTMATADSARRFVA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +         D++ I  +    +L    L  P +    +  I   ++Q   +   
Sbjct: 61  HVGGTMEHFDSIP-TDMTSIYRIAVQTALEGVLLAAPLVFTGFVVTIACGMLQTGFLYRP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R+S   G++R++ + N+V  +KS  K ++ G ++            +    +
Sbjct: 120 QAILPDITRLSPMRGLQRMFGMTNVVEMLKSLTKFVVFGVVLYAVAKGTLHVAPEAERWS 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              ++          ++++LL    + +LD  W+ +     L+MS Q+IKDE +Q+ G+P
Sbjct: 180 MLRLVSELSSWFAYAVLVVLLVQCVIAILDDLWTRYHRIVGLRMSFQDIKDEFRQTEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R K + R R R +M++A   AT++ITNPTHYA+AL Y    + AP +VA G + +A
Sbjct: 240 KVKGRLKQMRRRRARRRMLQAVKTATVVITNPTHYAVALSYESGADSAPKIVASGTDELA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R  A +  +P+   P LAR+L   +P++S IP  +++ VA +I  +   K
Sbjct: 300 ARIRHAAEDAKVPVVANPPLARALHA-LPLDSEIPSEYFQPVAAIIAYVMKLK 351


>gi|312876517|ref|ZP_07736500.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796728|gb|EFR13074.1| type III secretion exporter [Caldicellulosiruptor lactoaceticus 6A]
          Length = 303

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 159/295 (53%)

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
                    S     LED+     LL+ +  ++ ++++P  L  M+        Q   ++
Sbjct: 1   MQQGSKYFFSNLNYNLEDVRDASRLLSFIITTSLKVILPFCLTIMLVAAIVEWAQSSFLI 60

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               +K SF++++  EG KRI+SIN++V  +KS +K++++G             +L+   
Sbjct: 61  TGQSLKMSFQKINPIEGFKRIFSINSVVELIKSILKVLIIGYTGYSYTQSFAKKLLEMYG 120

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
            N  +I+  +  +   +++ + +    + V+D  +   Q+  KL M+K+E+K+E KQ+ G
Sbjct: 121 MNVLTIVKFSLDSAINLILWMSVMFFGIAVIDFIFQRQQYEKKLMMTKEEVKEEFKQTEG 180

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           NP IK++ +   R     +M +   +A ++ITNPTHYA+AL Y   + DAP ++AKG++ 
Sbjct: 181 NPQIKSKIRERQRRISLQRMFQQLPKADVVITNPTHYAVALLYEPEKFDAPRVIAKGKDY 240

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA K+++ A +H I I E   LAR+L+    I   IPP  Y+AVA+++  +Y  K
Sbjct: 241 IALKIKQEAIKHRIEIVENRELARALYNMCEIGDFIPPELYQAVAEVLAYVYSLK 295


>gi|33596846|ref|NP_884489.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33600620|ref|NP_888180.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568219|emb|CAE32132.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33573547|emb|CAE37538.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 349

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ K++ D+  +G    SR+ +  + I A   + L      + S+ + +    
Sbjct: 2   SGEKTEQPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPA 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A A Q        +  +LT +   A R++ P +L+ +  G+ +  +Q   VL    +KPS
Sbjct: 62  AFADQAF---AVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPS 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            ++++    +K I+S  NL+ F+KS  KI+ +  ++T+ + ++   ++    +    +  
Sbjct: 119 AEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDSLQPLMAVPHSGLDGLRT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ ++  I L    +++ D+ W  +Q+   L+MSK E+K E K+  G+P IK ++
Sbjct: 179 GVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K + +  I H       RAT+++TNPTH A+AL Y   E   P ++A GQ  +A  M + 
Sbjct: 239 KHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEA 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A +  +P+ +  +LAR+L  Q  ++  IP    + VA ++  +  
Sbjct: 299 ARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAVRQ 343


>gi|329942812|ref|ZP_08291591.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10]
 gi|332287404|ref|YP_004422305.1| type III secretion system protein [Chlamydophila psittaci 6BC]
 gi|313847984|emb|CBY16981.1| putative membrane transport protein [Chlamydophila psittaci RD1]
 gi|325506497|gb|ADZ18135.1| type III secretion system protein [Chlamydophila psittaci 6BC]
 gi|328815072|gb|EGF85061.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10]
 gi|328914653|gb|AEB55486.1| type III secretion protein, hrpY/hrcU family [Chlamydophila
           psittaci 6BC]
          Length = 360

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +    +  S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A      D    ++ L +         +P L      GI    +   P  +    KP  
Sbjct: 62  EAPIN--HDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  E +K+ + +  L+  +KS +KI     I+ ++L      +++    +P  I   
Sbjct: 120 KKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIVETAGVSPIVIAVI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + VLD+ +    +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ IPI     LA  L+ +      IP   Y+A+ +++  I   
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344


>gi|227876759|ref|ZP_03994868.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC
           35243]
 gi|307701577|ref|ZP_07638594.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris
           FB024-16]
 gi|227842656|gb|EEJ52856.1| flagellar biosynthesis protein FlhB [Mobiluncus mulieris ATCC
           35243]
 gi|307613256|gb|EFN92508.1| putative flagellar biosynthetic protein FlhB [Mobiluncus mulieris
           FB024-16]
          Length = 373

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 177/354 (50%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+      KTE  +   ++    +G    S++ + + S+ A    L        ++   
Sbjct: 1   MSD---SGEKTEKATPHHLKKVREDGGLQKSQDLTGWISLAAGAALLPSLMDTAGHNGRE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119
            +  +        +   + I+  L          ++P +L  M+  +   +IQ   V  +
Sbjct: 58  QIAAVRELVNGVSM---TEILGFLGQSLQGVLWTLLPFMLAIMLVAVLVNIIQGKGVFPS 114

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             H+KP  + ++L +G+K+I  +  L N +K+ +K + VG ++ + ++     M      
Sbjct: 115 AKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALLKTVAVGVVLYLIISGVMEIMGAAGHM 174

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +   ++ +    +  ++   ++    +++LD  + + +   + KMSKQE+K+E KQ  G+
Sbjct: 175 SGRDLVNYGTDKMWLLIWASVIAGIVVSILDALFIFKKNQKQTKMSKQEVKEEYKQQEGD 234

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK++++S A    R++MM   + A +++ NPTHYA+AL+Y   +  AP +VAKG + +
Sbjct: 235 PQIKSQRRSRALQMSRNRMMNDAAEADVVVVNPTHYAVALKYEPGQ-GAPKVVAKGVDHL 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R+IA ++ +P+ E+ +LAR+L+    I   IP   Y AVAQ++      K
Sbjct: 294 ASRIREIALDNRVPMVEDVALARTLYSTAEIGVEIPEELYTAVAQVLAFCLLLK 347


>gi|171316786|ref|ZP_02905997.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
 gi|171098044|gb|EDT42860.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
          Length = 377

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 165/344 (47%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ K++ DA  +G    S E S   + ++C+  LL+F       +   +  + 
Sbjct: 18  SGEKTELPTPKRLRDARKDGQTSKSTEISDTIA-MSCVAALLWFAGNHFSDMVRGIVAVA 76

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              +    E    +   L ++ + A  +V+P +    +   G    Q   V+ +  + P 
Sbjct: 77  LEFSHPDAEQ-KALDASLYNIGMHAISVVLPCVFAGAIAATGISFAQVGAVIAMKPIVPK 135

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + V+   G+KR++S+   +  +K+ VK +LVGT++  +++  +  ++  +      +  
Sbjct: 136 LENVNPAAGLKRMFSLRTAIELIKTIVKALLVGTVMWFAVSALFPLVVGSLHQPLAGLSV 195

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +    K++ +  +    + ++D+      +  ++KMSK +IK E KQ  G+P+IK  +
Sbjct: 196 MFWELWLKLIAIACIAFLIIGIVDLKLQKVMFIRQMKMSKDDIKREHKQQEGDPLIKGER 255

Query: 247 KSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
             +AR         +A   A +++ NPTHYA+ALRY   E+  P +V KG +  A  +R 
Sbjct: 256 LRLARELATSAPEKKAVGLANVVLVNPTHYAVALRYAPHEHPLPRVVEKGMDASAALIRH 315

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A E   P+   P +AR+L+K V I   +P   ++ VA ++  +
Sbjct: 316 YAEELGTPVIGNPPVARALYK-VDIGGPVPRELHETVAAILRWV 358


>gi|291276831|ref|YP_003516603.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
 gi|290964025|emb|CBG39864.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
          Length = 364

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 171/355 (48%), Gaps = 8/355 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      K EAPS++KI+ A  EGN   S E   F S +  +  +   F   + ++  
Sbjct: 1   MADE---QEKQEAPSARKIQKAREEGNVAKSPELVAFVSFVIGIFAVFGIFPFWLQNIKG 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L   +      + +   L   L      +++P L   +  G+   +IQ   +L  
Sbjct: 58  IYITCLQFFSME--FSLGNFFDLFLKLLWQTLLIILPVLGALLFAGVFGNIIQVGFLLAP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++   G+K ++S   L+  +   +K+ +   +    L      + +    N
Sbjct: 116 KVLQPKLGKLNPIAGLKNLFSFKKLLEGLLITLKVFVAFLLGGAILIHFLRQIPNVAMLN 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S           ++  +L+    + ++D      Q+   L+MSKQE+KDE KQ  GNP
Sbjct: 176 VFSQAIWVRDKALILIASLLVLFFVMAIIDFLIKKFQYTKSLRMSKQELKDEYKQQEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + I       KMM+A   A +++TNPTHYA+ALR+    + AP++VAKG + +A
Sbjct: 236 EVKAKIRQIMMKNTMGKMMQAIPNADVVVTNPTHYAIALRFAPN-DPAPIVVAKGIDHLA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKK 353
            +++ IA E+ I I E P LAR+L+KQV +   IP   ++AVA +  ++  + +K
Sbjct: 295 IRIKGIARENEIEIVENPKLARALYKQVDLEEPIPRELFEAVAIIFAQLKKFQEK 349


>gi|269976286|ref|ZP_06183282.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1]
 gi|306817706|ref|ZP_07451448.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC
           35239]
 gi|269935615|gb|EEZ92153.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris 28-1]
 gi|304649520|gb|EFM46803.1| flagellar biosynthetic protein FlhB [Mobiluncus mulieris ATCC
           35239]
          Length = 373

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 177/354 (50%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+      KTE  +   ++    +G    S++ + + S+ A    L        ++   
Sbjct: 1   MSD---SGEKTEKATPHHLKKVREDGGLQKSQDLTGWISLAAGAALLPSLMDTAGHNGRE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119
            +  +        +   + I+  L          ++P +L  M+  +   +IQ   V  +
Sbjct: 58  QIAAVRELVNGVSM---TEILGFLGQSLQGVLWTLLPFMLAIMLVAVLVNIIQGKGVFPS 114

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             H+KP  + ++L +G+K+I  +  L N +K+ +K + VG ++ + ++     M      
Sbjct: 115 AKHLKPKLQNLNLVKGVKKIAGVQALWNGLKALLKTVAVGVVLYLIISGVMEIMGAAGHM 174

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +   ++ +    +  ++   ++    +++LD  + + +   + KMSKQE+K+E KQ  G+
Sbjct: 175 SGRDLVNYGTDKMWLLIWASVIAGIVVSILDALFIFKKNQKQTKMSKQEVKEEYKQQEGD 234

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK++++S A    R++MM   + A +++ NPTHYA+AL+Y   +  AP +VAKG + +
Sbjct: 235 PQIKSQRRSRALQMSRNRMMNDAAGADVVVVNPTHYAVALKYEPGQ-GAPKVVAKGVDHL 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R+IA ++ +P+ E+ +LAR+L+    I   IP   Y AVAQ++      K
Sbjct: 294 ASRIREIALDNRVPMVEDVALARTLYSTAEIGVEIPEELYTAVAQVLAFCLLLK 347


>gi|33593237|ref|NP_880881.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603237|emb|CAC79582.1| bscU [Bordetella pertussis Tohama I]
 gi|33563612|emb|CAE42513.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382646|gb|AEE67493.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 349

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 173/345 (50%), Gaps = 3/345 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ K++ D+  +G    SR+ +  + I A   + L      + S+ + +    
Sbjct: 2   SGEKTERPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPA 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A A Q        +  +LT +   A R++ P +L+ +  G+ +  +Q   VL    +KPS
Sbjct: 62  AFADQGF---AVALGPVLTEILDQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPS 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            ++++    +K I+S  NL+ F+KS  KI+ +  ++T+ + ++   ++    +    +  
Sbjct: 119 AEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRDSLQPLMAVPHSGLDGLRT 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ ++  I L    +++ D+ W  +Q+   L+MSK E+K E K+  G+P IK ++
Sbjct: 179 GVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K + +  I H       RAT+++TNPTH A+AL Y   E   P ++A GQ  +A  M + 
Sbjct: 239 KHLHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEA 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A +  +P+ +  +LAR+L  Q  ++  IP    + VA ++  +  
Sbjct: 299 ARDAGVPVMQNVALARALHDQAEVDQYIPGELVEPVAAVLRAVRQ 343


>gi|171322350|ref|ZP_02911175.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
 gi|171092322|gb|EDT37690.1| type III secretion protein, YscU/HrpY family [Burkholderia
           ambifaria MEX-5]
          Length = 360

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 167/350 (47%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      KTE PS +K++    +G    S++ +   ++ A +  L    S     ++ 
Sbjct: 1   MAE-----EKTEEPSERKLKKVREKGQIAKSKDVADAVTLAAAIGVLTAGESMLTGGLSR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L      +       +  L  L+ SA+  ++P ++  ++ GI S   Q   ++ L
Sbjct: 56  TIRTALDFVNGER--TPQATLSALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  ++   GIK+I+S+ +L+  +K  VK +++  +I   +   +  ++  +   
Sbjct: 114 EPVMPKFDAINPMAGIKKIFSMKSLLELVKMIVKAVVLACVIWKMMMSLFPLVVASVYEA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +    +  + K+L ++ L +      D   +   +    +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLLGVVALVVTVFAAADYKIARMMFMRDNRMTKEEAKRENKESEGDP 233

Query: 241 IIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             K  ++ +AR         +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  
Sbjct: 234 HTKGERRRLAREIATSAPARQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +R+ A+   +PI   P +AR+L++ V  ++AIP   ++ VA ++  +
Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-VERDAAIPEELFETVAAILRWV 342


>gi|126442503|ref|YP_001061219.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei 668]
 gi|254182916|ref|ZP_04889509.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
 gi|126221994|gb|ABN85499.1| flagellar biosynthesis pathway, component FlhB [Burkholderia
           pseudomallei 668]
 gi|184213450|gb|EDU10493.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           1655]
          Length = 379

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 159/353 (45%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  L+      +    +
Sbjct: 1   MANQDSGD-KSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              + L   T      +++   +   +S++    +I    +  +  +   L+    +L+ 
Sbjct: 60  LFLLELVDVTGDG--ALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPGGWILSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F R++    + R+ S  +   F  S +K + +  ++           L      
Sbjct: 118 AQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L   F       + +   +    + D+ +    +    +M+KQE+KDE K + G P
Sbjct: 178 LQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 298 LAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|332701286|ref|ZP_08421374.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551435|gb|EGJ48479.1| flagellar biosynthetic protein FlhB [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 357

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 182/353 (51%), Gaps = 5/353 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
            +  +KTE+ ++K+ + + +EGN P S+E S  + IL  L+ L          + S    
Sbjct: 3   QSDPSKTESATAKRRKKSRDEGNVPRSQELSKLAVILVGLLVLRLLIGFIGDEMKSLFAS 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L++    +L     +  L   L++  +++++P L    +       IQ   +      K
Sbjct: 63  FLSNWGNLEL-TTEGLYILFVDLAVHLAKMLLPVLFSLALAAFVINRIQVGQLWTTKVFK 121

Query: 125 PSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           P  ++  ++  GIKR I++++  V   +S +    V     I L      +L   S    
Sbjct: 122 PKMEKFVNIVGGIKRLIFNVDAFVRLARSILGAAAVAIGPIILLRHEMNNLLPLFSQTTE 181

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I  +      K+++  L+ + T+ V+D  ++   +  KLKM+K E+KDE KQ+ G+P I
Sbjct: 182 GIAVYMLTVSYKMVLYSLIPMITVAVIDTVYTRWDYEEKLKMTKDEVKDERKQAEGDPKI 241

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           + RQK    +    +M+    +A +++TNPTH+A+AL Y  ++  AP++VAKG + +AK+
Sbjct: 242 RQRQKQKMMAMSMSRMLHNVPKADVVVTNPTHFAVALSYDLSKAPAPLVVAKGADHMAKR 301

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKK 353
           +R++A E  +PI E   LAR+L+ QV +   IP   YKAVA ++ ++  + KK
Sbjct: 302 IREMAREAGVPIRENKPLARALYDQVEVGDIIPEDLYKAVATILARLHKFRKK 354


>gi|56695095|ref|YP_165442.1| flagellar biosynthesis protein FlhB [Ruegeria pomeroyi DSS-3]
 gi|56676832|gb|AAV93498.1| flagellar biosynthetic protein FlhB [Ruegeria pomeroyi DSS-3]
          Length = 362

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+  P+ +K++ A  +G    S + S+ ++    L+ L    +  I  + +
Sbjct: 1   MSGQDDDSDKSYEPTPQKLQKAREKGEVAKSADLSVVAAYAGLLLALSALGAASITKLGT 60

Query: 61  DLHVLLASATQ-RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L VL+  A    +L      V  +  L  +    ++P  L+     I S + QR  V+ 
Sbjct: 61  ALTVLIGQADGLSRLVFEGRAVGPVGGLMGTVGASILPWFLVPAAAVILSVVAQRAFVMA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + + P   R+S+ +  K  +    L  F KSFVK++L    +   +  N   ++     
Sbjct: 121 PSKLVPKISRISILQNAKNKFGRGGLFEFAKSFVKLLLYSVCLGFFIKLNLSDIVSSAGM 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                +      + + + ++      +  +D  W + +   K  MS++E+ DE K + G+
Sbjct: 181 EARQSVLLMARLLMRFMFLVATVALVIGAIDYLWQHAEHIRKNMMSRKELMDETKDAEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K +++   +    ++M+     A ++I NPTHYA+AL++ +    APV VAKG + +
Sbjct: 241 PHMKQKRRQKGQEIAMNQMLADVPGADVVIVNPTHYAVALKWSRLPGAAPVCVAKGVDEV 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A  +R+ A E  +PI  +P  AR+L   V I   I    Y+ VA  I  
Sbjct: 301 AAAIRRSAAEAGVPIHSDPPTARALHAGVEIGQEISEEHYRPVAAAIRF 349


>gi|32490783|ref|NP_871037.1| hypothetical protein WGLp034 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165989|dbj|BAC24180.1| flhB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 385

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 97/356 (27%), Positives = 172/356 (48%), Gaps = 9/356 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D    K E P+  +++ A ++GN P SRE + FS ++   I + F  +  +  +  
Sbjct: 1   MSNKDE-LEKQEDPTPNRLKKARSKGNIPRSRELTSFSILIFGWILIWFTGNNLLDKIIV 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG---SYLIQRIPV 117
           +L   L      KL    HI ++L ++ L + +       +  +  I    S  +    V
Sbjct: 60  ELKKNL----NFKLYLYEHINYILVNIYLISKKFFFIIFPIIFIIMIITIISSGLLGGWV 115

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +   F R++  + I RI+S N  +   K+  K   +       L    F + D  
Sbjct: 116 FSKKSLNIDFSRLNPYKNISRIFSKNVFIEMAKTLFKFFFMLFSCIFYLWHTRFQISDLS 175

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
             N  + + +    + K + +I+L    +   D  +    +   L+MSK+E++DE K++ 
Sbjct: 176 DNNYSNAIKNCILIISKCVFVIILSSIPIVFFDSIFQLFTFKKNLRMSKKEVQDENKENE 235

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           GNP +K+  +   R     +MM+   ++ +II NPT+YA+ L+Y +    APVL+AKG  
Sbjct: 236 GNPQLKHYIRKKQRHIYNMRMMQNVEKSDVIIVNPTNYAVGLKYEKN-MKAPVLLAKGTG 294

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            IA K+++ A E  IPI   P LAR+++K   I   IP   Y++VA+++  +Y+ K
Sbjct: 295 NIAIKIKEKAQEKFIPIIAVPPLARAIYKYCNIGEYIPIELYESVAEILTWVYNLK 350


>gi|225181592|ref|ZP_03735033.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1]
 gi|225167700|gb|EEG76510.1| type III secretion exporter [Dethiobacter alkaliphilus AHT 1]
          Length = 309

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 153/310 (49%), Gaps = 1/310 (0%)

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
           +  L       +++  +   +       R L    ++  L           + P   + +
Sbjct: 1   MTALFMAVGQFLFNHLAQTMLRFLQMDGRLL-TPGNLNALTMRAFGDFFLFMAPVFAVSL 59

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
           + G+    +Q   +     + P F R++  EG K+I S   L    KS +K+++VG +  
Sbjct: 60  IAGLAVNYLQVGFLFTTEPLNPQFNRLNPAEGFKKIASKRALFELAKSLLKVLMVGFVAF 119

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
           + +  N   +L  +  +   +          + + I      L+VLD  +  ++    LK
Sbjct: 120 LFVRGNLENLLATLYQDAAGVWETLRSLSLNLALRIGALFLVLSVLDYIYQRYEHNQNLK 179

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSKQEIK+E KQ  G+P +K++ +   RS    +MM+    AT++ITNPT  A+A+RY +
Sbjct: 180 MSKQEIKEEHKQMEGDPQLKSQLRERQRSIATQRMMQDVPEATVVITNPTELAVAIRYRE 239

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
             ++AP +VAKG  L+AK++R+ A E+N+PI E   +AR L+ QV I   IP   Y+AVA
Sbjct: 240 DRDEAPTVVAKGAALMAKRIRETAKENNVPIMENKPVARMLYDQVEIGQEIPVDLYQAVA 299

Query: 344 QLIYKIYHKK 353
           +++  +Y  +
Sbjct: 300 EILALVYKLR 309


>gi|89898354|ref|YP_515464.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89331726|dbj|BAE81319.1| type III secretory flagellar biosynthesis Yop translocation protein
           U [Chlamydophila felis Fe/C-56]
          Length = 360

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +    +  S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A      D    ++ L +         +P L      GI    +   P  +    KP  
Sbjct: 62  EAPIN--HDPRVTLYYLQNCLTLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  E +K+ + +  L+  +KS +KI     I+ ++L      +++    +P  I   
Sbjct: 120 KKFNPIENLKQKFKMKTLIELLKSVLKIFGAALILYVTLKNRVPLIIETAGVSPLVIAAI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + VLD+ +    +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIITEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ IPI     LA  L+ +      IP   Y+A+ +++  I   
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344


>gi|157738150|ref|YP_001490834.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018]
 gi|315636293|ref|ZP_07891543.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22]
 gi|157700004|gb|ABV68164.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri RM4018]
 gi|315479382|gb|EFU70065.1| flagellar biosynthetic protein FlhB [Arcobacter butzleri JV22]
          Length = 349

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 183/353 (51%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   + KTE P+SKK+EDA NEGN   S E    S +    I+LLFF    +  +  
Sbjct: 1   MADD---EEKTEEPTSKKLEDAKNEGNVSKSMEVVGASILTFGSIFLLFFSGSSMLEIKK 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + +      Q    D      +   + ++  + + P  +L ++ G+     Q   +   
Sbjct: 58  LMMLSYNFIGQEM--DGPLYYAITYTVVITLLKALAPLFILVILLGLVGNWAQFGFI--S 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   +++   +G+K I+ +  L+  +K  +K+ ++ T++ I  +  Y   L  ++  
Sbjct: 114 IPLKFDLQKLDPIKGLKNIFGLKKLLEALKLSLKLAIIITVMFIIFSLTYNEFLAMMNKE 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +          +  IL  I    ++D  +S + +   LKMSKQEIKDE K   G+P
Sbjct: 174 TMATISSMLQLTIYFIFTILFIIIIFAIMDFYFSKYYYMKSLKMSKQEIKDEYKNMEGDP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + I     + +MM     A ++ITNPTHYA+AL+Y    N APVLVAKG + +A
Sbjct: 234 QVKGRIRRIQMQMAQKRMMGNVPNADVVITNPTHYAVALKYDNKVNSAPVLVAKGIDFLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K++ IA E+N+ I E P+LAR+L+ Q+ ++  IP  FYKA+A++   +Y  K
Sbjct: 294 LKIKDIAKENNVTIIENPALARALYDQIEVDKEIPNQFYKAIAEIFSYLYELK 346


>gi|16799762|ref|NP_470030.1| flagellar biosynthesis protein FlhB [Listeria innocua Clip11262]
 gi|16413139|emb|CAC95919.1| lin0687 [Listeria innocua Clip11262]
          Length = 348

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIKAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +    +   + +L+        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPKLASMESYSLFYLM-----EFGKVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 SQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|313624921|gb|EFR94829.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL J1-023]
          Length = 348

 Score =  302 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 5/341 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +    +   + +L+        ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPKLASMESYSLFYLM-----EFGKVLMPVMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 SQIFALFKNEFLALFLVIAIIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R+
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQ 296

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +A    +P+     LARS++     +  I    YK V +++
Sbjct: 297 VADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 337


>gi|83814498|ref|YP_446683.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855]
 gi|294508619|ref|YP_003572678.1| flagellar biosynthetic protein flhB [Salinibacter ruber M8]
 gi|83755892|gb|ABC44005.1| flagellar biosynthetic protein flhB [Salinibacter ruber DSM 13855]
 gi|294344948|emb|CBH25726.1| Flagellar biosynthetic protein flhB [Salinibacter ruber M8]
          Length = 353

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 176/354 (49%), Gaps = 5/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE      K   P+ +++E A  +GN   + E      +L  +       +    S+  
Sbjct: 1   MSE---TQEKQYDPTPRRLEKAREKGNVLRATEPVSVGLLLTAMAVFSVGGASAFQSLQD 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +   + +  L   + +  L+  +    + ++ P  ++ ++  +G  ++Q    ++ 
Sbjct: 58  MAARIFLRSARMSL-TPASLQRLVAEIGAQVAGMLAPLFIVLIVAAVGLNMVQSGWNVSF 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   RV+  EG+K+I+S      F K+ +KI +VG I   ++      M+   +  
Sbjct: 117 TPIQPQLSRVNPLEGLKQIFSSKGAFGFAKTLLKIGVVGPIAYFAMRPLIPEMVQVYTLP 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L  A      ++  +L+ +  +  LD  +   ++Y  LKMSK+E++DE K++ G+P
Sbjct: 177 LPALLNQAADWFFALMWRVLMGLVVIAALDYAFERWKYYEDLKMSKKEMEDEQKETEGDP 236

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             + +++  A+      +M  A  ++  ++TNPTHYA+ALRY   E  AP ++ KG    
Sbjct: 237 EFEEKRREKAKELAEQPRMDHAVMKSDAVVTNPTHYAIALRYDPDEAPAPRVLLKGVRKR 296

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A +++++A E ++P FE  SLA +L++ VP    IP   Y AVA ++ ++Y ++
Sbjct: 297 ALRIKELAAEFDVPTFENRSLAHALYENVPEEEEIPEELYPAVAAILAEVYEQR 350


>gi|134280655|ref|ZP_01767365.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305]
 gi|167725903|ref|ZP_02409139.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei
           DM98]
 gi|254299711|ref|ZP_04967160.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
 gi|134247677|gb|EBA47761.1| FlhB/HrpN/YscU/SpaS family [Burkholderia pseudomallei 305]
 gi|157809492|gb|EDO86662.1| flagellar biosynthetic protein FlhB [Burkholderia pseudomallei
           406e]
          Length = 379

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 159/353 (45%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  D+ D K+E  + +K+ +A  +G    SR+ S    +L  L  L+      +    +
Sbjct: 1   MANQDSGD-KSEKATPQKLRNARRQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              + L   T      +++   +   +S++    +I    +  +  +   L+    +L+ 
Sbjct: 60  LFLLELVDVTGDG--ALANAWSVALPVSIALFLKMIAPFFVVPLCVVLGSLLPGGWILSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F R++    + R+ S  +   F  S +K + +  ++           L      
Sbjct: 118 AQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L   F       + +   +    + D+ +    +    +M+KQE+KDE K + G P
Sbjct: 178 LQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +++R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++AKG + +A
Sbjct: 238 EVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 298 LAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|325527806|gb|EGD05073.1| flagellar biosynthesis protein FlhB [Burkholderia sp. TJI49]
          Length = 308

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 143/263 (54%)

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
               ++P L L  +  + + +     +++    +  F R++   G+ RI+SI   +    
Sbjct: 1   GFAALLPILALTGLAALLAPMALGGWLISQKTFELKFDRLNPISGLGRIFSIQGPIQLGM 60

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S  K ++VG I  I++  +   +L   +    + L  A   V       +  +  +  LD
Sbjct: 61  SIAKTLVVGGIGGIAIWRSKDELLGLATQPLDAALVDALHLVAVCCGTTVAGMLVVAGLD 120

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
           + +   Q+  KL+M+K+E+K E +++ G+P +K R +   R+  R +MM A  +A +++T
Sbjct: 121 VPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRIRQQQRAIARRRMMAAVPKADVVVT 180

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NPTH+A+AL+Y   E  AP +VAKG NL+A ++R++A EHN+P+ E P LAR+L+  V +
Sbjct: 181 NPTHFAVALQYTDGEMRAPKVVAKGVNLVAARIRELAAEHNVPLLEAPPLARALYHNVEL 240

Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
              IP   Y AVA+++  +Y  K
Sbjct: 241 EREIPGSLYAAVAEVLAWVYQLK 263


>gi|283836566|ref|ZP_06356307.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC
           29220]
 gi|291067495|gb|EFE05604.1| secretion system apparatus protein SsaU [Citrobacter youngae ATCC
           29220]
          Length = 347

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 154/340 (45%), Gaps = 3/340 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KT+AP+SKKI DA  EG    + E +    +   L+YL  +       ++  L   +
Sbjct: 2   SGEKTQAPTSKKIRDAREEGQVAKTAELAAGVQLAVILMYLYLWGDDIWQDLSDLLLFTI 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                      +  + +           +     +     + +YL Q   + +   + P 
Sbjct: 62  DKMNDPLPIAFAGFISMFGKFVFEDLIFL---FAVLFFASMSAYLAQIGFLFSGKAMMPK 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             ++ + + +K I+S+ +LV  +K+ VK+ ++G++          ++ + +   P   + 
Sbjct: 119 LDKLDVVKNLKNIFSVKSLVELLKNLVKMTIIGSVFYYLFCRYIPSLRNMVYIEPADAMQ 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +   ++L     ++ D  +  ++    L+MS +E+K E K+  G+  +K+ +
Sbjct: 179 VTLKIIFWLWGGLVLCYIVFSLADYAYQRYELMKNLRMSHEEVKQEYKEMEGSAEVKSHR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           KS+ +      +     +++ +I NPTH A+ + Y +     PV+ AKG +LIA+ +  I
Sbjct: 239 KSLHQEIQSGSLANTVKKSSAVIRNPTHLAICIYYDENITPLPVITAKGADLIARYIVDI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A +  +P+ E   LAR L K++     I P F+ A+++++
Sbjct: 299 AEKAGVPVIENVPLARGLNKEIKTGDYISPPFFSAISEIL 338


>gi|332526006|ref|ZP_08402146.1| Translocation protein in type III secretion [Rubrivivax
           benzoatilyticus JA2]
 gi|332109851|gb|EGJ10479.1| Translocation protein in type III secretion [Rubrivivax
           benzoatilyticus JA2]
          Length = 387

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 165/350 (47%), Gaps = 5/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +   +KTE P+ KK++DA  +G    SR+ S    +LA L  ++   +     + +
Sbjct: 1   MADKNDGGDKTEKPTPKKLQDARRKGQVSKSRDLSSTVPLLAWLAVVVLGSAYAGRELGA 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                LAS  +        +  L    +L  S L    LL     G+    +Q  PV + 
Sbjct: 61  LADAALASIGRPFEVAAPALGELAWRTTLWLSAL---ALLPAAALGVLVEFLQAGPVFSA 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  + ++  EGIKR++ ++NLV   KS  K +L+  I  + L          + A 
Sbjct: 118 ERLKPKAEHLNPVEGIKRMFGLDNLVELAKSLAKCVLLLAIGALVLRGVLADSARLLQAP 177

Query: 181 PH--SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               ++        R+ L   L+    +  LD+ W  H +  KL+MS ++IK E K+S G
Sbjct: 178 AGVGAVGTLLLEVTRQALTWTLVAFVLVAALDMAWQRHSFTKKLRMSLRDIKQETKESEG 237

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P ++ +++   +   +    +A  +A +++ NPTH A+A+ Y +     P + AKG++ 
Sbjct: 238 DPQVRQQRRQAHQEWSQRNAQQAARQANVLVVNPTHVAIAIDYDRDTCPVPTISAKGEDH 297

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +A+ MR+ A E  +PI     LAR L  +  +   +P   +  VA++I  
Sbjct: 298 VARAMREAAEEAGVPIVRNVPLARDLLGRGEVGQLVPADLFDVVAEVILW 347


>gi|94986993|ref|YP_594926.1| translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731242|emb|CAJ54605.1| translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 360

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 168/347 (48%), Gaps = 3/347 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
              +KTE P+ KK+ +A  +G+   S++ +   ++    +Y +  +     ++ + L  L
Sbjct: 4   DSGDKTEPPTPKKLREAREQGDVAKSQDVAAAMTMFGASLYFIGMWQDVFSNLLN-LIEL 62

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                    E+   +   ++ ++  A  ++IP +   M   + + L+Q   + ++    P
Sbjct: 63  PTKFIHLPFEE--ALPATISGIASIAFSILIPIIATLMFLAVAADLMQIGVLFSVKSAIP 120

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
               ++ ++   +++SI NL  F+K+ +K+ ++   + I L+     +    S N  S+ 
Sbjct: 121 KLDNLNPKKWFSKVFSIKNLGEFVKNILKVSVLTITVWIILSNYIKELFAIASGNIWSLW 180

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           Y     +R + + + +  + +  +D  +   Q+  +  MSKQEIK E K   G+P+IK +
Sbjct: 181 YILGSVLRDLTLSVSMVFSVIACIDFMFQKWQYNKRQMMSKQEIKQEYKDMEGDPLIKGK 240

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K + +       +    +A +++ NP HYA+A+ Y +     PV++AKG+ L+A++M  
Sbjct: 241 RKQLHQEMAMQNPVNKVRKAKVVVVNPIHYAIAIDYEKGRTLLPVILAKGEGLLAQRMVA 300

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +A E  IP+ +   LA SLF     +S IP      VA+++  +   
Sbjct: 301 VAQEEGIPVMQNIPLAHSLFMDGIEDSYIPRNLIAPVAEVLRWVNSL 347


>gi|310816836|ref|YP_003964800.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare
           Y25]
 gi|308755571|gb|ADO43500.1| flagellar biosynthetic protein FlhB [Ketogulonicigenium vulgare
           Y25]
          Length = 360

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 169/340 (49%), Gaps = 1/340 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  A  +K+  P+ KK+EDA  +G+ P S + ++ ++     + L    +    +  +
Sbjct: 1   MSEEAAGADKSHDPTPKKLEDARKKGDHPKSADLTIAAAYGGYYLGLTALGAGLALAAVN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  LL  A     +  S    ++    LS + L V+P + +  M  + S   QR  V  
Sbjct: 61  QLGGLLYHADGLATDAFSAPAHVVLRPLLSITSLAVLPLITVPAMLALLSLFAQRALVFA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + + P   R+S     K+ + +  ++ F+KS  K++L    +   L+ N+  +    + 
Sbjct: 121 PSKLVPKLSRISPLAVAKQKFGLAGIIEFLKSAAKLLLYTGALAWFLSTNFDEIAATPAM 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              S+L      +  +L++ L+    L VLD  W   +     +MS+QE+ DE+K+S G+
Sbjct: 181 PARSVLVFMGQMLAAMLLIALVISLVLGVLDAVWQQIRHLRDNRMSRQEVMDEMKESEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P  + +++    +   +++     +A++II NPTHYA+AL++      APV +AKG + +
Sbjct: 241 PHTRQQRRQRGIAIAMNQVAAEVPKASVIIVNPTHYAVALQWQPDSRRAPVCLAKGIDEV 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
           A +MR+IA EH +PI  +P  AR+L+ Q  +   I    Y
Sbjct: 301 ALRMRQIAQEHGVPIQSDPLTARALYAQTEVGQEISRQHY 340


>gi|257457600|ref|ZP_05622767.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
 gi|257444986|gb|EEV20062.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
          Length = 383

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 173/351 (49%), Gaps = 8/351 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+  KI  A  EG    S++ +    +L     L+F  S  +      L   
Sbjct: 27  EDEGRTEDPTDYKIRKAREEGRVAKSQDINAALVLLFPAGALIFLSSFFLEECMEILRFF 86

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124
              +TQ  +                  +L +P  L+ M+ G+ + ++Q    + +   ++
Sbjct: 87  FLRSTQSDINS----GIWFGIFVQYFLKLALPLALIAMLAGVIANILQNNGFLFSTKPIQ 142

Query: 125 PSFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P F ++  +     KR ++S   L NF KS  K++++  +  + +  N    ++ +S + 
Sbjct: 143 PQFNKIVPNFMRFFKRALFSAEGLFNFAKSLTKVVVLVFVSFLMIRANLPHFIELLSVSF 202

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              ++       K+L    L +  L + D  +   Q+   LKM+KQEIK+E K+  G+P 
Sbjct: 203 PQAVFFIAGLGAKLLATAALLLLILAIPDYFFQRKQFIDSLKMTKQEIKEEYKELEGDPQ 262

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K R +   ++ +    +    +A ++ITNPTH+A+A+++      AP+++AKG + +A+
Sbjct: 263 VKGRIRQQMQAILSQNAIRNVPKADVVITNPTHFAIAMQWDSKTMAAPMVLAKGADAMAQ 322

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +++ IA EHNIP+ E   LAR+L+ +V I   IP  +Y+A++ +  ++Y  
Sbjct: 323 RIKAIAREHNIPLIENKPLARALYAKVQIGDIIPEEYYRALSLVFAEVYTL 373


>gi|167905062|ref|ZP_02492267.1| flagellar biosynthesis protein FlhB [Burkholderia pseudomallei NCTC
           13177]
          Length = 379

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 159/350 (45%), Gaps = 2/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           N    +K+E  + +K+ +A  +G    SR+ S    +L  L  L+      +    +   
Sbjct: 3   NQDSGDKSEKATPQKLRNARKQGQIARSRDLSTAIGVLVSLKMLVLLAPSWLAEFRALFL 62

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           + L   T       +  V L   ++L   +++ P  ++ +   +GS L+    +L+   +
Sbjct: 63  LELVDVTGDGALANAWSVALPVSIAL-FLKMIAPFFVVPLCVVLGS-LLPGGWILSGAQL 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP F R++    + R+ S  +   F  S +K + +  ++           L         
Sbjct: 121 KPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLSATTLAAFLRLQHLPLQE 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L   F       + +   +    + D+ +    +    +M+KQE+KDE K + G P ++
Sbjct: 181 ALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTKQEVKDEHKNAEGRPEVR 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +R + + R   +  + +    A +++ NPTHYA+AL+Y     +AP ++AKG + +A  +
Sbjct: 241 SRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRAEAPFVIAKGVDDMALAI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 301 RRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVLTYVLQLK 350


>gi|166154312|ref|YP_001654430.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|166155187|ref|YP_001653442.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335563|ref|ZP_07223807.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930300|emb|CAP03786.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis 434/Bu]
 gi|165931175|emb|CAP06740.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 360

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAEHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +A Q    D    ++ L +  +    + +P L      G+    +   P  +    KP  
Sbjct: 62  TAPQN--HDPHLAIYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  + +K+ + +   +  +KS  KI     I+ I L      +++     P      
Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I LF   + V+D+ +  H +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGLFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ +PI     LA  L  +      IP   Y+AV +++  I   
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344


>gi|29840222|ref|NP_829328.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29834570|gb|AAP05206.1| type III secretion protein, hrpY/hrcU family [Chlamydophila caviae
           GPIC]
          Length = 360

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A      D    ++ L +  +      +P L      GI    +   P  +    KP  
Sbjct: 62  QAPIN--HDPKVTLYYLQNCLVLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  + +K+ + +  L+  +KS +KI     I+ ++L      +++    +P  I   
Sbjct: 120 KKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIAVI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + VLD+ +    +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIVEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ +PI     LA  L+ +      IP   Y+A+ +++  I   
Sbjct: 300 EKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344


>gi|2444073|gb|AAB71508.1| cytoplasmic membrane component required for type III
           (contact-dependent) secretion [Chlamydophila caviae]
          Length = 360

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAKHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A      D    ++ L +  +      +P L      GI    +   P  +    KP  
Sbjct: 62  QAPIN--HDPKVTLYYLQNCLVLILTTSLPLLGAVGFVGIIVGFLVVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  + +K+ + +  L+  +KS +KI     I+ ++L      +++    +P  I   
Sbjct: 120 KKFNPIDNLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIGVI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + VLD+ +    +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIVEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ +PI     LA  L+ +      IP   Y+A+ +++  I   
Sbjct: 300 EKYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344


>gi|15834985|ref|NP_296744.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270285154|ref|ZP_06194548.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270289175|ref|ZP_06195477.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|301336549|ref|ZP_07224751.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
 gi|7190408|gb|AAF39227.1| type III secretion inner membrane protein SctU [Chlamydia muridarum
           Nigg]
          Length = 360

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       S     +   L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAEHLGGFLVSIFR 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +A Q+   D    V+ L +  +    + +P L      G+    +   P  +    KP  
Sbjct: 62  TAPQQ--HDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLLIGFLVVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  E +K+ + +   +  +KS  KI     I+ I L      +++     P      
Sbjct: 120 KKFNPIENLKQKFKLKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGVPPLVTAQI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + V+D+ +  H +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGMFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL A+++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ +PI     LA  L  +      IP   Y+AV +++  I   
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344


>gi|255264526|ref|ZP_05343868.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62]
 gi|255106861|gb|EET49535.1| flagellar biosynthesis protein FlhB [Thalassiobium sp. R2A62]
          Length = 374

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 167/349 (47%), Gaps = 3/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D    K    ++KK+EDA  +G  P S + +  +S    LI +  F S  I    +
Sbjct: 15  MAEDDT--EKPHEATAKKLEDARKKGEFPKSVDLTTSASYAGMLIVMAVFGSFSIERFGA 72

Query: 61  DLHVLLASATQRK-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            +  L++       +  ++        + L  +  + P   +  +  + + + QR  V  
Sbjct: 73  LMVQLISEPVALAHVAFLAPGGAQAKWVILGLATQLAPWFTVPALCALVALVTQRAIVFA 132

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P   R+SL    K  +  + L  F+KSF K+ +   I+++ L+     +L  ++ 
Sbjct: 133 PTKLAPKISRISLLSNAKNKFGRSGLFEFLKSFSKLTIYSIILSVFLSIKLPIILSSMTT 192

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  I       + ++L ++L+    +  +D  W + +   K  MS QEIKDE K + G+
Sbjct: 193 QPRLISAQLATLIVELLSLVLVVSIIIGGVDYLWQHAEHLRKNMMSDQEIKDEHKNNEGD 252

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  ++        ++M+ A   A ++I NPTH+A+AL++ ++    P  +AKG + I
Sbjct: 253 PGMKQERRQRGYDIAMNQMLGAVEEADVVIVNPTHFAVALKWDRSRGSVPKCLAKGVDEI 312

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A ++R+ A E  IPI  +P  AR+L+  V I   I P  YKAVA  I  
Sbjct: 313 AARIRERAAEEAIPIHSDPPTARALYATVEIGQEIRPDHYKAVAAAIRF 361


>gi|76788804|ref|YP_327890.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|237802523|ref|YP_002887717.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804440|ref|YP_002888594.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255310893|ref|ZP_05353463.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317193|ref|ZP_05358439.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|255348453|ref|ZP_05380460.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255502995|ref|ZP_05381385.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|76167334|gb|AAX50342.1| SctU [Chlamydia trachomatis A/HAR-13]
 gi|231272740|emb|CAX09644.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231273757|emb|CAX10538.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis B/Jali20/OT]
 gi|289525135|emb|CBJ14607.1| type III secretion system inner membrane protein [Chlamydia
           trachomatis Sweden2]
 gi|296434679|gb|ADH16857.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296435608|gb|ADH17782.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296436531|gb|ADH18701.1| type III secretion system protein [Chlamydia trachomatis G/11222]
 gi|296437468|gb|ADH19629.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|296438396|gb|ADH20549.1| type III secretion system protein [Chlamydia trachomatis E/11023]
 gi|297139967|gb|ADH96725.1| type III secretion system protein [Chlamydia trachomatis G/9301]
          Length = 360

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAEHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +A Q    D    V+ L +  +    + +P L      G+    +   P  +    KP  
Sbjct: 62  TAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  + +K+ + +   +  +KS  KI     I+ I L      +++     P      
Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGIPPLVTAQV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + V+D+ +  H +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ +PI     LA  L  +      IP   Y+AV +++  I   
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344


>gi|261209856|ref|ZP_05924157.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341]
 gi|262404466|ref|ZP_06081021.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586]
 gi|260841042|gb|EEX67567.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC341]
 gi|262349498|gb|EEY98636.1| flagellar biosynthesis protein FlhB [Vibrio sp. RC586]
          Length = 330

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 151/305 (49%)

Query: 49  FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108
            +F   +          L S ++ ++ D+  +  ++    ++    ++  L+      + 
Sbjct: 1   MWFGEALAQGLFTAMQRLFSLSREEIFDVGKLFDIIGGALVNLLLPLLMILITLFTAALI 60

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                     +     P   +++   G KR++ + + V  +KS +K++LV  +    +  
Sbjct: 61  GAAGIGGINFSAEAAMPKLSKMNPLSGFKRMFGMQSWVELLKSILKVMLVAGVAFYLIEA 120

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           +   +           ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE
Sbjct: 121 SQKDLFQLSLDVYPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQE 180

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 181 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 240

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 241 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 300

Query: 349 IYHKK 353
           ++  K
Sbjct: 301 VFQLK 305


>gi|167567948|ref|ZP_02360864.1| type III secretion system protein [Burkholderia oklahomensis EO147]
 gi|167573178|ref|ZP_02366052.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 352

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 169/343 (49%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S  +S+ A +++L+    P   ++ S +   L
Sbjct: 2   SDEKTEEPTEKKLRDARKDGQVSRSADFSDAASMTAAVLFLVAAADPLDDAMRSLVDCAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              +      ++ +   L  L   A   ++P L    + GIG  ++Q    +++  V P+
Sbjct: 62  TFVSGD--HSLAEMTTRLYKLGGIALWAIVPYLCAAALAGIGGSILQVGLQVSMKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              +S  +G+KRI+S   ++  +K  VK   V  ++  ++   +  +   +      +  
Sbjct: 120 IGALSPADGLKRIFSPRTVIESVKMLVKAAAVFCVMWKTVEWLFPLIAGALYQPLPELSQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            ++  + K+L++     A +   D+   +  +  +++MSK E+K E K   G+P++K  +
Sbjct: 180 ISWEILTKLLMVAAGLFALVGAADMKLQHFMFMKQMRMSKDEVKREAKNDEGDPLLKGER 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + IAR           +RA  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ 
Sbjct: 240 RRIARELAAAPPQRQVARANFVVVNPTHYAVAVRYASDEHPLPRVIAKGTDETAAALRRA 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A   N+PI   P +AR+LF +V +   IP   ++ +A ++  +
Sbjct: 300 AQNANVPIVGNPPVARALF-EVGVEEPIPEELFEIIAAILRWV 341


>gi|283850714|ref|ZP_06368001.1| type III secretion exporter [Desulfovibrio sp. FW1012B]
 gi|283573957|gb|EFC21930.1| type III secretion exporter [Desulfovibrio sp. FW1012B]
          Length = 357

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 6/355 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+ + +   KTE  + K+ + A  +G+ P S+E    + +LA L  L         ++  
Sbjct: 1   MARDPS---KTEKATQKRRDKAREKGSVPRSQELPKLTVLLAGLFTLRLLIDDLGDALRE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L      +      +  L+  LS   + +++P LL+  + G  +   Q   V   
Sbjct: 58  VFTTFLGQRLAFE-ATPDGVNALMWLLSQKLAVMLLPLLLVMAVVGYVTQRWQVGEVWYS 116

Query: 121 NHVKPSFKRV-SLREGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               P F  + +    I+++  +   LV   K       +G    + L   +        
Sbjct: 117 RLFNPDFSNLFNPVAAIQKLLINPKTLVQLGKQVAMAAAIGLAPYLILKNKFDEFFPLFY 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
               +           +++  L+ +  + VLD+ ++   +   LKM+K EIKDE KQ+ G
Sbjct: 177 QTTENFAAFLLGNGFILVLYTLVPMVIIAVLDVWYTRWDYEENLKMTKDEIKDETKQAIG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK +QK      ++ +M++   +A ++ITNPTH+A ALRY   E+ AP+L+AKG + 
Sbjct: 237 DPAIKQQQKRKMMEVMQRRMLQDVPKADVVITNPTHFACALRYNPKESPAPLLLAKGADH 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A+K+++IA EH IPI E   LA++L+K V I   IP   Y+AVA ++ ++   K
Sbjct: 297 LAEKIKEIAREHRIPIRENKPLAQALYKNVEIGQTIPEDLYQAVASILAQLDKFK 351


>gi|15604810|ref|NP_219594.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|255506666|ref|ZP_05382305.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|3328487|gb|AAC67682.1| Yop proteins translocation protein U [Chlamydia trachomatis
           D/UW-3/CX]
 gi|297748220|gb|ADI50766.1| SctU [Chlamydia trachomatis D-EC]
 gi|297749100|gb|ADI51778.1| SctU [Chlamydia trachomatis D-LC]
          Length = 360

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLASFFAKHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +A Q    D    V+ L +  +    + +P L      G+    +   P  +    KP  
Sbjct: 62  TAPQN--HDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIGFLIVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  + +K+ + +   +  +KS  KI     I+ I L      +++     P      
Sbjct: 120 KKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKNRVELVIETAGIPPLVTAQV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + V+D+ +  H +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ +PI     LA  L  +      IP   Y+AV +++  I   
Sbjct: 300 EKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSL 344


>gi|323143905|ref|ZP_08078567.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei
           YIT 12066]
 gi|322416332|gb|EFY07004.1| type III secretion protein, YscU/HrpY family [Succinatimonas hippei
           YIT 12066]
          Length = 348

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 171/347 (49%), Gaps = 2/347 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ K++ DA  +G+   S+E    ++++A + + +         + S    + 
Sbjct: 2   SGEKTEQPTDKRLRDAREQGDIAKSQEVVSAATVIAVVFFFIANADNIFKKLLSTTDYVF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +++     ++   ++     +   +  +V+P +   +   + + L Q   +       P 
Sbjct: 62  SNSITMPYDEALRLIG--AAVIDCSIGIVLPIVAAVLCAALVALLSQTGFLFAPKGAIPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + +S  +  K+++S+ NL+ F+K+ +K+ ++   + ++   ++       ++N  S+  
Sbjct: 120 LENLSPAKWFKQVFSVKNLIEFIKNIIKVTVLSVAVYMAAKNSFREFFKIQNSNIGSVWE 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +   ++ + I  ++  + L  +D  ++  ++     MS  E+K E K+  G+P IK+++
Sbjct: 180 LSAVLLKDLAIYAIVAFSILAAIDFVYTKFKYTKDHMMSPDEVKQEYKEMEGDPQIKSKR 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +       +  T +A ++ITNPTHYA+A+ Y +     PV++AKGQ  +A++M  I
Sbjct: 240 RQLHQEMANQSTLANTRKAKVLITNPTHYAVAIDYEEGRTKLPVILAKGQGDLARRMIAI 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A E +IPI  +P LAR+LF +      +P      VA+++  I   +
Sbjct: 300 AKEEHIPIMRQPPLARALFAEGSEEQYVPSDLLVQVAEVLRFIDKMR 346


>gi|282891999|ref|ZP_06300476.1| type III secretion inner membrane protein SctU [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281498041|gb|EFB40383.1| type III secretion inner membrane protein SctU [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 356

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 159/343 (46%), Gaps = 3/343 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK+ DA N+G    S++     + +  +   L         + S   +   
Sbjct: 2   GEKTEKATPKKLRDARNKGQVAKSQDLPSAFTFIVSIWVTLAASKFLFDHLGSFTVMTFH 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
              +  L+  + I  L            IP L +  + G+    +   P+  L   K   
Sbjct: 62  QIAKGSLD--TAIPDLYIQGLTEIFITSIPILGMVSVIGVLINFLVVGPMFALEVFKFDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+      +K  + +  LV  +KS +KI +   I+   + ++   ++  +S    + L  
Sbjct: 120 KKFDPISNLKSKFKLKTLVELLKSVLKISIACYIVYDVMWKSLPVLIRAVSLPIDASLMV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
            +  + +V+I + LF   + V D  +    + S++KM K E+K E K S G+P IK+++K
Sbjct: 180 FYAFLMEVVIKVGLFFIIIAVADFIYQKKTFASEMKMEKFEVKQEYKNSEGDPQIKSKRK 239

Query: 248 SIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
            IA+     +       RA  ++TNPTH A+A+ Y +  + AP ++AKG++ +A+++ K 
Sbjct: 240 QIAQEIAYQEGPRGGVKRAQAVVTNPTHLAIAIGYKKDYDAAPFVLAKGEDALAERIIKY 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E N+P+     LA  L+++  +   +P   Y+ +A+++  I
Sbjct: 300 AEEFNVPVVRNIKLAHKLWEEADVYEFVPEDTYELIAEILRWI 342


>gi|15596887|ref|NP_250381.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
 gi|107101122|ref|ZP_01365040.1| hypothetical protein PaerPA_01002154 [Pseudomonas aeruginosa PACS2]
 gi|218892354|ref|YP_002441221.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
 gi|254234789|ref|ZP_04928112.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|254240035|ref|ZP_04933357.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|9947663|gb|AAG05079.1|AE004596_5 translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
 gi|126166720|gb|EAZ52231.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|126193413|gb|EAZ57476.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|218772580|emb|CAW28363.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
          Length = 349

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 178/346 (51%), Gaps = 9/346 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDLH 63
              KTE P++KK+ DA  +G    S+E    + IL+ +  L+ F   +   +  +     
Sbjct: 2   SAEKTEQPTAKKLRDARRQGQVVKSKEIVSSALILSLVALLMGFSDYYLEHLGKLLLLPA 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             +    ++ LE I   +       L+   L      +  +  + S++ Q   +L+L+ V
Sbjct: 62  EYIDLPFRQALETILENLLQELLYLLAPVLL------VAALVVVLSHVGQYGFLLSLDSV 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP  K+++  EG K+I+SI +LV F+KS +K+ L+  ++ ++L  N  ++L   +     
Sbjct: 116 KPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLDC 175

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +   +   +R+++++  +    + V D  +  HQ Y +L+MSK E+K E K+  G+P IK
Sbjct: 176 VAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEIK 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++++   +      +     R+++I+ NPTH A+ +RY + E   P++  K  + +A ++
Sbjct: 236 SKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLVTLKHTDALALRV 295

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           R+IA E  IP+ +   LAR+L +   ++  IP    +A A+++  +
Sbjct: 296 RRIAEEEGIPVLQRIPLARALLRDGNVDQYIPADLIQATAEVLRWL 341


>gi|269796379|ref|YP_003315834.1| flagellar biosynthesis protein FlhB [Sanguibacter keddieii DSM
           10542]
 gi|269098564|gb|ACZ23000.1| flagellar biosynthesis pathway, component FlhB [Sanguibacter
           keddieii DSM 10542]
          Length = 422

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 164/353 (46%), Gaps = 4/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS       KTE  + K+++    +G    S++ S +  I A  + L      G  +   
Sbjct: 1   MSGGGDSGEKTEQATPKRMKQNRKDGALQRSQDLSAWLGIGAAAVMLPVALGRGAEAAVD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +    +     D   +V LL     S    + P L++ ++  +   + Q    +  
Sbjct: 61  QLSAVREIISN---PDPLVVVDLLGTGMDSILTSLTPLLVVVVLAAVVGNVSQGGLHVAT 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP F   +L +GIK  +    L   +K+  K ++VG ++ I++      +L     +
Sbjct: 118 KKLKPKFDHFNLVKGIKNTFGGQALWQGVKALAKTLVVGLVLYIAIQNLMPVLLTAGGLS 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L  A   ++ +L   +     L +LD+     +   K +MSK E+K E KQS G+P
Sbjct: 178 VGALLSAAGGGIQALLWSAVAAGIALAILDLVVVMKRNRKKTRMSKYEVKQENKQSEGDP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   +S   +  R++M+ +   A +++ NPTH A+AL+Y      AP +VAKG   +A
Sbjct: 238 QLKGAIRSKQIAMSRNRMIASVGDADVVLVNPTHVAVALKYEAG-TGAPRVVAKGAGHVA 296

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R++A E ++P+  +  LAR+L     I   IP   Y AVAQ++  +   K
Sbjct: 297 ARIREVAAEKSVPMISDVPLARALHGACEIGEEIPADLYAAVAQVLAFVMALK 349


>gi|238918897|ref|YP_002932411.1| secretion system apparatus protein SsaU [Edwardsiella ictaluri
           93-146]
 gi|48256991|gb|AAT41686.1| type three secretion apparatus protein U [Edwardsiella ictaluri]
 gi|84663105|gb|ABC60087.1| EsaU [Edwardsiella ictaluri 93-146]
 gi|238868465|gb|ACR68176.1| EsaU [Edwardsiella ictaluri 93-146]
          Length = 351

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 155/338 (45%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K++ DA  EG    S++      +   L++++        ++   +   LA+
Sbjct: 3   EKTEQPTDKRLRDAREEGQVAKSQDIGATVQLAVILLWMVTEGPRMYAAIGGFIDATLAT 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L  +  +  L    +    R V    +L ++  I + L++   +     + PS +
Sbjct: 63  V---NLPLLDAMTLLTGEAATLMIRFVFGLAMLLIVTLILTGLVETGFLFAPKAIMPSAE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R+S     K++ S+  L    K  +KI+++G   T  +     +    + A+  + L+  
Sbjct: 120 RISPLSNAKQMVSLLKLFELGKMILKIVILGLTFTYFIRSYAESFAQLVRADAEAGLWVT 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +  ++LL  A   V+D    Y     +L MS+++IK E K S G+P IK R++ 
Sbjct: 180 SKMILWLWGILLLLTALFAVVDYSMQYRHLRKQLMMSREDIKQEFKNSEGSPEIKQRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R      + ++ + A++++ NPTH A+ LRY + E   P +V  G+   A+ +  +A 
Sbjct: 240 LHREIQSGSLADSVASASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARAQHIVTLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
              IP+ E   LAR+L         +P   + AVAQL+
Sbjct: 300 ALRIPVVENIPLARALIATTRPGDYVPEELFAAVAQLL 337


>gi|91200239|emb|CAJ73283.1| similar to flagellar biosynthetic protein FlhB [Candidatus Kuenenia
           stuttgartiensis]
          Length = 349

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 188/353 (53%), Gaps = 5/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ K+I +   +G+   S + S   +IL   + LL+     +Y+   
Sbjct: 1   MADT----EKTEQPTGKRISEVRQKGSVAQSPDLSSAIAILVGFL-LLYALGNIMYAGMK 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           ++ V       +K      IV  + +    ++++++P L   ++ G+    +Q   +  L
Sbjct: 56  EITVFTLQNLSQKDITPDIIVEKIIYYIYVSAKILLPILGGLLIVGLIVSYMQTGLLFTL 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   ++++  G+K+++++ + V  + S VK++L+G I  + + +    + + I   
Sbjct: 116 KPLKPDLTKLNVISGVKKLFNVQSFVKLLFSVVKLLLIGGIGILYIKKELAKLDNLIDIG 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                         +++ + + +  L ++D  +   Q+   +KMSK+E+KDE KQ+ G+P
Sbjct: 176 IAQFFILTTKLTFGLVMRVSIALVILAMVDYIYQKWQYKRGMKMSKKEVKDERKQAEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK++ +S        +M  A  +A +++TNPTHYA+AL+Y +    AP +VAKG + IA
Sbjct: 236 VIKSKIRSAQIQMALKRMASAIPKADVVVTNPTHYAVALKYDRKSMHAPKVVAKGADYIA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA  + IPI EE SLAR+L+K V +   IP   Y AVA+++  +Y  K
Sbjct: 296 LKIKEIAKINKIPIVEERSLARTLYKTVDVGKEIPQKLYYAVAKVLSYVYGLK 348


>gi|121607921|ref|YP_995728.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2]
 gi|121552561|gb|ABM56710.1| type III secretion exporter [Verminephrobacter eiseniae EF01-2]
          Length = 387

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 155/348 (44%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           +   K+   S +K++ A  +G    SRE    + + A    +       +  +   L   
Sbjct: 3   SSQEKSLPASGRKLQKARADGQGARSRELLHLAILGAGSAGMWLLAPQWLDRMQLALSRQ 62

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           LA            ++  L  + L          +L  +  +   L     +L+   ++P
Sbjct: 63  LAFDAAAIAA-PGTMLDRLRDMVLPGLVAGTGFAVLTGVAALVGALGAGGWILSTRPIQP 121

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F R+    G+  ++S   + N +K  +   ++G +    L  +  T+   +       L
Sbjct: 122 RFSRLDPVAGLTHLFSRQQMANVLKMVLMTGVLGVVAWQFLAGSMATVAMLVLQPSPRAL 181

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +   L  +LL +    ++D+      + ++L+MS QE++ E ++S GNP  K R
Sbjct: 182 GLLVDWLGAGLGWLLLVLLLAALVDVPMQAWFFKARLRMSHQEVRQEHQESDGNPHTKGR 241

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            +   R       + A  RA  ++ NP HYA+ALRY +    AP ++A+G +L+A ++R 
Sbjct: 242 IRQRQRDLAERASVGAVPRADFVVMNPAHYAVALRYDEKTMGAPQVIARGTDLLAFRIRD 301

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +A EH +P+ + P LAR+L+    ++ AIP   Y AVAQ++  +Y  K
Sbjct: 302 LAREHGVPVLQSPRLARALYAHAALDQAIPAPLYAAVAQVLAHVYRLK 349


>gi|221639480|ref|YP_002525742.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131]
 gi|221160261|gb|ACM01241.1| Flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides KD131]
          Length = 382

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 94/360 (26%), Positives = 169/360 (46%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE P+ K+ E A  +G+   S+E  +F++ LA  + LL      + ++  
Sbjct: 3   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 61

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117
                L       LE I+     +  L  +   ++I GL++ +       L+Q       
Sbjct: 62  GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +     R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +    
Sbjct: 117 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+S 
Sbjct: 177 TAAPGDAATVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 236

Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K R + +          R   ++   +AT I+TNPTH+A+ALRY+  E  APV++
Sbjct: 237 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 296

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+  +A  + +   +  I     P LAR+L+    I   IP   Y AVA ++  +Y  
Sbjct: 297 AMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 356


>gi|254511494|ref|ZP_05123561.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           KLH11]
 gi|221535205|gb|EEE38193.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           KLH11]
          Length = 362

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 1/337 (0%)

Query: 13  APSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQR 72
             + +K+E A  +G    S + S+ ++     I LL        ++ +   VL+  + Q 
Sbjct: 13  EATPQKLEKARKKGEVAKSNDLSVVAAYAGLFIALLTAGQYTAQNLGTLFVVLIDQSDQI 72

Query: 73  K-LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131
             L      V  +  +  +A   V    ++     + S + QR  V   + +KP   R+S
Sbjct: 73  ATLLTQGPAVVPVAGMLKAAMVPVSALFIVPAAAVLLSLIAQRALVFAPSKLKPRASRIS 132

Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191
           +    K  +    L  F KSFVK+++ GT + + L  +   +L   +A   S +      
Sbjct: 133 IPSNAKNKFGRGGLFEFAKSFVKLLIYGTCLALFLQAHLPEILTASAAPARSSILLMMTL 192

Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
           + + L +++     + ++D  W + +   K +MS++E++DE K S G+P +K +++  A+
Sbjct: 193 LTRFLFIVITIALAIGIVDYLWQHAEHMRKNRMSRKEVQDETKDSEGDPHVKQQRRQRAQ 252

Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311
               ++MM    +A ++I NPTHYA+AL++ +    APV VAKG + +A  +R  A +  
Sbjct: 253 EIAANQMMADVPKADVVIVNPTHYAVALKWSREAGSAPVCVAKGVDEVAATIRATADDAG 312

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +PI  +P  AR+L   V I   +   +Y+ VA  I  
Sbjct: 313 VPIHSDPPTARALHATVEIGQEVTEEYYRPVAAAIRF 349


>gi|332558493|ref|ZP_08412815.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N]
 gi|332276205|gb|EGJ21520.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides WS8N]
          Length = 380

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 93/360 (25%), Positives = 169/360 (46%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE P+ K+ E A  +G+   S+E  +F++ LA  + LL      + ++  
Sbjct: 1   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117
                L       LE I+     +  L  +   ++I GL++ +       L+Q       
Sbjct: 60  GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +     R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +    
Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+S 
Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234

Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K R + +          R   ++   +AT I+TNPTH+A+ALRY+  E  APV++
Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+  +A  + +   +  +     P LAR+L+    I   IP   Y AVA ++  +Y  
Sbjct: 295 AMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354


>gi|77463637|ref|YP_353141.1| flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1]
 gi|77388055|gb|ABA79240.1| Flagellar protein FlhB [Rhodobacter sphaeroides 2.4.1]
          Length = 380

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/360 (26%), Positives = 169/360 (46%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE P+ K+ E A  +G+   S+E  +F++ LA  + LL      + ++  
Sbjct: 1   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117
                L       LE I+     +  L  +   ++I GL++ +       L+Q       
Sbjct: 60  GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +     R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +    
Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+S 
Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234

Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K R + +          R   ++   +AT I+TNPTH+A+ALRY+  E  APV++
Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+  +A  + +   +  I     P LAR+L+    I   IP   Y AVA ++  +Y  
Sbjct: 295 AMGKGPMALDIIERGRKAGIGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354


>gi|116049640|ref|YP_791555.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389926|ref|ZP_06879401.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           PAb1]
 gi|313110376|ref|ZP_07796265.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
 gi|115584861|gb|ABJ10876.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882767|gb|EFQ41361.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
          Length = 349

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 178/346 (51%), Gaps = 9/346 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFF---FSPGIYSVTSDLH 63
              KTE P++KK+ DA  +G    S+E    + IL+ +  L+ F   +   +  +     
Sbjct: 2   SAEKTEQPTAKKLRDARRQGQVVKSKEIVSSALILSLVALLMGFSDYYLEHLGKLLLLPA 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             +    ++ LE I   +       L+   L      +  +  + S++ Q   +L+L+ V
Sbjct: 62  EYIDLPFRQALETILENLLQELLYLLAPVLL------VAALVVVLSHVGQYGFLLSLDSV 115

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           KP  K+++  EG K+I+SI +LV F+KS +K+ L+  ++ ++L  N  ++L   +     
Sbjct: 116 KPDLKKINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLDC 175

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           +   +   +R+++++  +    + V D  +  HQ Y +L+MSK E+K E K+  G+P IK
Sbjct: 176 VAPVSGLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEIK 235

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++++   +      +     R+++I+ NPTH A+ +RY + E   P++  K  + +A ++
Sbjct: 236 SKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLITLKHTDALALRV 295

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           R+IA E  IP+ +   LAR+L +   ++  IP    +A A+++  +
Sbjct: 296 RRIAEEEGIPVLQRVPLARALLRDGNVDQYIPADLIQATAEVLRWL 341


>gi|238899254|ref|YP_002924937.1| type III secretion system apparatus protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467015|gb|ACQ68789.1| type III secretion system apparatus protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 352

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 160/346 (46%), Gaps = 5/346 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K+I+++  +G    S E +  + +   LIY          ++ + + +L+ S
Sbjct: 3   EKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYFSLVGP----NLVNLMGLLITS 58

Query: 69  ATQRKLEDIS-HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           + ++  + I   ++ L + ++    +++        +  I   + Q  P+L +  +    
Sbjct: 59  SIKKLDKPIGIAVLDLTSEIASVFLQIMGVLGGGLALATILVVMSQVGPLLAIKAIGFKG 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           + ++     K + S+ +L    KS  K+ILV  I    L E   T         H     
Sbjct: 119 QHINPISNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLREYAPTFGYLSYCGTHCAFPI 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               ++ +L  +L       +LD  + ++    K+KMS++EIK E K + G+P IK++++
Sbjct: 179 FGTLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDGDPEIKSKRR 238

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + +      +      +T +I NPTH+A+ L Y   E   P+++ KG+   A+ + K+A
Sbjct: 239 ELQQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGTRAQTIIKLA 298

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + ++P+ E   LA+ L  +V  +  IP   ++ VA ++  + + +
Sbjct: 299 EKFDVPVVENVRLAQMLHNEVNCDEIIPEHLFEPVAAILRFVLNLE 344


>gi|68164507|gb|AAY87236.1| predicted flagellar biosynthetic protein [uncultured bacterium
           BAC17H8]
          Length = 385

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 165/358 (46%), Gaps = 9/358 (2%)

Query: 1   MSE-NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E N     KTE P+ ++++ A  EG    S+E  +F+++ A L+ L    SP + S  
Sbjct: 1   MAEENQDGQEKTEEPTQRRLQKAAEEGRILTSKEVMVFTTLAAGLV-LFMGLSPFVASGL 59

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
                L    +   L+ +  +        +  + LV+   L+ ++    + +        
Sbjct: 60  DAWGSLFRIDSGFNLDTLGLVKVRYAFWLVILATLVVGMPLIVVIILTQAAV--GGLNFA 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              +     R+    G+KRI+S+  LV   KS +K+ L+  I  + +      ++   S+
Sbjct: 118 AQAMNFKGNRIDPIAGLKRIFSVKGLVELAKSVLKVGLLFGIGALVIYHQLPQLVFLSSS 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +    +  A      ++  +L+ +  +  +D  W  H     L+M+ +E+KDE KQ+ G+
Sbjct: 178 SLSQGVNRAAQAFPFLVGGLLIALLVIAAIDYAWQKHTHTQSLRMTLKEVKDESKQTEGS 237

Query: 240 PIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           P ++ + + +   +      + + +     AT ++TNPTH+A+AL+Y   +  APV++A 
Sbjct: 238 PEVRAKIRRMQYQQAQESSRQREALGNVGDATTVVTNPTHFAVALKYAAGQEGAPVVLAM 297

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           G+  +A ++ + A E  +     P LAR+L+    I   I    Y AVA ++  ++  
Sbjct: 298 GRGQMAMQIIERAKEARVRTLRIPMLARALYFTSEIGGEITEGLYNAVAVVLAYVFRL 355


>gi|330444474|ref|YP_004377460.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum
           E58]
 gi|328807584|gb|AEB41757.1| type III secretion protein, hrpY/hrcU family [Chlamydophila pecorum
           E58]
          Length = 359

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 148/346 (42%), Gaps = 2/346 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +    +  S     +   L   L 
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMSMAFYLSSFFYQHLGGFLVSTLT 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A      D    ++ L +         +P L+   + G+    +   PV +    KP  
Sbjct: 62  QAPIN--HDPRLALYYLKNCLTLILAASLPLLVSVGIIGLIVGFLIVGPVFSTEVFKPDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  E IK+ + +  L+  +KS  KI     I+ + L      +++     P      
Sbjct: 120 KKFNPIENIKQKFKVKTLIELLKSVFKIFGAALILYVVLKNRVPLIIETAGVAPIVTAQI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K +  I +F   + VLD+ +  H +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKQIFYKAVTSIGIFFVVVAVLDLVYQRHNFSKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDPSSQIKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILAEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ IPI     LA  L+ +      IP   Y+A+ +++  I   +
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSLQ 345


>gi|62185075|ref|YP_219860.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62148142|emb|CAH63899.1| putative membrane transport protein [Chlamydophila abortus S26/3]
          Length = 360

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 148/345 (42%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +    +  S     + S L  +  
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAKHLGSFLVSIFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A      D    ++ L +         +P L      GI    +   P  +    KP  
Sbjct: 62  EAPIN--HDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGILVGFLVVGPTFSTEVFKPDL 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  E +K+ + +  L+  +KS +KI     I+ ++L      +++    +P  I   
Sbjct: 120 KKFNPIENLKQKFKVKTLIELLKSILKIFGAALILYVTLKNRVPLIIETAGVSPIVIAVI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + K +  I +F   + VLD+ +    +  +LKM K E+K E K + GN  IK R++
Sbjct: 180 FKEILYKAVTSIGIFFLVVAVLDLVYQRKNFAKELKMEKFEVKQEFKDTEGNLEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ YI  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYIPEKYKAPWIIAMGINLRAKRIITEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ IPI     LA  L+ +      IP   Y+A+ +++  I   
Sbjct: 300 EKYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSL 344


>gi|255745141|ref|ZP_05419090.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101]
 gi|262153469|ref|ZP_06028599.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1]
 gi|255736971|gb|EET92367.1| flagellar biosynthesis protein FlhB [Vibrio cholera CIRS 101]
 gi|262030706|gb|EEY49340.1| flagellar biosynthesis protein FlhB [Vibrio cholerae INDRE 91/1]
          Length = 330

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 150/305 (49%)

Query: 49  FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG 108
            +F   +          L   ++ ++ D+  +  ++    ++    ++  L    +  + 
Sbjct: 1   MWFGEILAKGLMVAMQRLFELSREEIFDLGKLFDIIGGSLVNLLLPLLMILSTLFIAALI 60

Query: 109 SYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
                     +     P   +++   G+KR++ + + V  +KS +K++LV  +    +  
Sbjct: 61  GAAGVGGISFSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEA 120

Query: 169 NYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQE 228
           +   +           ++HA   +   +++I   +  +  +DI +   Q   +LKM+KQE
Sbjct: 121 SQKDLFQLSLDVYPQNIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQE 180

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K + G P +K R + + R   + +MM A  +A +IITNP H+++ALRY Q  + A
Sbjct: 181 VKDEYKDTEGKPEVKGRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKA 240

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 241 PVVIAKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAF 300

Query: 349 IYHKK 353
           ++  K
Sbjct: 301 VFQLK 305


>gi|255523688|ref|ZP_05390654.1| type III secretion exporter [Clostridium carboxidivorans P7]
 gi|296186692|ref|ZP_06855094.1| putative flagellar biosynthetic protein FlhB [Clostridium
           carboxidivorans P7]
 gi|255512557|gb|EET88831.1| type III secretion exporter [Clostridium carboxidivorans P7]
 gi|296048729|gb|EFG88161.1| putative flagellar biosynthetic protein FlhB [Clostridium
           carboxidivorans P7]
          Length = 283

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/267 (30%), Positives = 147/267 (55%), Gaps = 1/267 (0%)

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
           +      + +P +L  M  G+ +  +Q   ++    +KP F +++   G KRI+S+  ++
Sbjct: 15  VVWRIGIIFLPVVLPIMFMGVLANFLQTGALITSEPLKPDFSKLNPINGFKRIFSMRTVM 74

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
              K    + +VG +    + +NY  +L   S N  ++          +   I + +  +
Sbjct: 75  ELFKDLAMVSIVGFVGYKFVKDNYEYILTLGSLNAQAVAAAVSKLTINIFFRITILMIII 134

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
            ++D  +   Q+   LKMSKQE+K+E KQ  G+P IK++ K   R     +MM+   +AT
Sbjct: 135 ALIDYVYQRFQFNKDLKMSKQEVKEEYKQDEGDPQIKSKIKQKQREMATRRMMQEVPKAT 194

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +++TNPTH A+AL+Y Q   +APV+ AKG + +A K+++IA E+++PI E   LAR ++ 
Sbjct: 195 VVVTNPTHIAVALKY-QEGLNAPVVAAKGADRVALKIKEIAKENDVPIIENKPLARLMYS 253

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +V ++  IP   Y+AVA+++  +Y  K
Sbjct: 254 EVELDEEIPMDMYEAVAEILALVYKIK 280


>gi|254446395|ref|ZP_05059871.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235]
 gi|198260703|gb|EDY85011.1| FlhB/HrpN/YscU/SpaS family [Verrucomicrobiae bacterium DG1235]
          Length = 369

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 187/351 (53%), Gaps = 2/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D  D+KTE P++K++ D   +GN P ++E  +  ++LA L+ ++F       +  S
Sbjct: 1   MADTD-QDSKTEKPTAKRLTDEQEKGNFPQAQEVGVTFTLLAGLLVVMFSGQTIASNAFS 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L + +   L   ++I +    + +   RL  P +L  M+ GI +  +Q       
Sbjct: 60  FSSSILGNLSSIDLS-TNNISYFFNEVIVVLGRLAAPFMLAGMVSGIIAGGLQTRFRFTP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   F +++   G K++ S +  V F    +K+  +G I+ +++ +     + +   +
Sbjct: 119 KALGIKFNKLNPINGAKQLVSKDVFVRFGIDLLKMGAMGLILWVAMRKIIKDPIFYAPID 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +      T+  V I + + +  + ++   W   +   K+KM+K+E+K E K    +P
Sbjct: 179 IVHVGMFITDTLVYVFIRLTIAVGLIAIISYLWQSKKTMDKMKMTKEEVKQERKDQDMSP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+  +  +A   ++ +M++  + A +++TNPTHYA+AL+Y +  + AP+++AKG+N  A
Sbjct: 239 EIRKARMQMAMRLMQGQMLDEVATADVVVTNPTHYAVALKYERGVDSAPMVLAKGENAFA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++++++A EH +P+ E   +AR L+K   + +AIP   +++VA+++  +Y 
Sbjct: 299 QRIKEVAAEHGVPVVENKMVARMLYKVAQVGAAIPMEMFQSVAEILAFVYK 349


>gi|170690587|ref|ZP_02881754.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis
           C4D1M]
 gi|170145022|gb|EDT13183.1| type III secretion protein, YscU/HrpY family [Burkholderia graminis
           C4D1M]
          Length = 373

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 166/344 (48%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ K++ D   +G    S +    +++ A +  L F  +    ++ S +   L
Sbjct: 2   SEEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVVGVLAFAAASFGGALRSIVTTAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A+     D   +   L  L   A  +++P +    +  + + + Q    +    V P 
Sbjct: 62  EFASGN--HDQPLMYGKLFDLGKQALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K VS  +G+KRI+S   +++ +K  VK  ++G ++  ++      ++  +      +  
Sbjct: 120 LKHVSPVDGVKRIFSWRTVIDLVKMIVKAAIIGVVMWFTIKWILPLIVGSLYQPLPELSK 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  + K+  + +     + V+D+      +  KLKMSK E+K E KQ  G+P IK  +
Sbjct: 180 LFWSLLIKLFAVAVAVFIAIGVIDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 239

Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K +AR         +    A  +I NPTHYA+A+RY   E+  P+++A+G +  A ++R+
Sbjct: 240 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGMDESAAQLRR 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A + N+PI   P +AR+L++ V I+  IP   ++ VA ++  +
Sbjct: 300 FARDANVPIIGNPPVARALYR-VGIDEPIPEELFETVAAILRWV 342


>gi|53722427|ref|YP_111412.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           K96243]
 gi|52212841|emb|CAH38875.1| putative type III secretion-associated protein [Burkholderia
           pseudomallei K96243]
          Length = 352

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S   S+ A ++ L+        ++ + ++  L
Sbjct: 2   SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A  +      +  +   L      A   V+P L +  + GIG  ++Q    ++L  V P+
Sbjct: 62  AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +  
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + K L+++      +   D+      +  K+KM+K E+K E K   G+P++K  +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG +  A  +R+ 
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDEAAIALRRA 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|126462469|ref|YP_001043583.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104133|gb|ABN76811.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17029]
          Length = 380

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 169/360 (46%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +    KTE P+ K+ E A  +G+   S+E  +F++ LA  + LL      + ++  
Sbjct: 1   MAEGEDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117
                L       LE I+     +  L  +   ++I GL++ +       L+Q       
Sbjct: 60  GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +     R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +    
Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+S 
Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234

Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K R + +          R   ++   +AT I+TNPTH+A+ALRY+  E  APV++
Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+  +A  + +   +  +     P LAR+L+    I   IP   Y AVA ++  +Y  
Sbjct: 295 AMGKGPMALDIIERGRKAGVGTLRIPLLARALYFTGDIGQEIPDGLYGAVAVVLAHVYRL 354


>gi|182412230|ref|YP_001817296.1| type III secretion exporter [Opitutus terrae PB90-1]
 gi|177839444|gb|ACB73696.1| type III secretion exporter [Opitutus terrae PB90-1]
          Length = 367

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 171/351 (48%), Gaps = 2/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E+D  D KTE PS KK+ +A++ G    S E ++   ++A L  L F        V +
Sbjct: 1   MAEHD-QDQKTEQPSEKKLSEAMDRGQFARSPELAVLFLLVAVLAALSFSVREASREVAT 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               L +     K+E  + I        L++   + P LL  ++  + +  +Q    L  
Sbjct: 60  YAASLFSRFGSMKVEHDT-IRAYFGEAMLTSGTALAPLLLACVVAALLAGGVQSGFRLTP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
                  +R++  EG KR+++ + LV      +K++ +G  + +         L      
Sbjct: 119 EAFGFKPERLNPVEGFKRVFNKSALVRAGVDLLKLVALGAALYLGARGLMMDPLFSAPVE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +           L  ++L +  +T +   +   + +  L M++QE+KDE K   G+ 
Sbjct: 179 AAYLGQFLTDATYVFLSRLILALGVITAISYSYEKFKTHRDLMMTRQELKDEHKNQEGSS 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
             K   + +AR   + +MM A   A +++TNPTH+A+AL+Y + ++ APV++AKG+N  A
Sbjct: 239 QAKMAMRRMARRLTQRQMMSAVPTADVVVTNPTHFAVALKYERGKDAAPVVLAKGENRFA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++++ IA EH +P+ E   +AR LF    +  AIPP  Y+AVA ++  +Y 
Sbjct: 299 QRIKAIAAEHGVPMVENKPVARLLFSMGKVGEAIPPELYQAVASILAVVYR 349


>gi|146277693|ref|YP_001167852.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555934|gb|ABP70547.1| flagellar biosynthetic protein FlhB [Rhodobacter sphaeroides ATCC
           17025]
          Length = 380

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 169/360 (46%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE P+ K+ + A  +G+   S+E  +F++ LA  + LL      + ++  
Sbjct: 1   MAEGDDGQEKTEEPTQKRRDQAREDGSIVTSKEVFVFAT-LAGGLALLVMLQGMLPALVR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117
                L       L+ +     ++  L      +++ GL++ +   +   L+Q       
Sbjct: 60  GWSGYLVLEPGADLDRV-----MMLRLGQVWREVLLAGLIVSVPLLVVVLLVQYGMGGIN 114

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +     R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +    
Sbjct: 115 FSTKAMAFKASRINPGAGLKRMVSMKALVELGKAIAKVSLLIGVAVLVLRDELAPLDRLW 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           ++ P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K++ 
Sbjct: 175 TSAPADAAAVMGVGLIRLVSALLIVLALIGGLDLVWQAWSLTNSMKMSRQELKEESKEAN 234

Query: 238 GNPIIKNRQKSIARSRIR-----HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K R + +     +        +E   +AT I+TNPTH+A+ALRY+  E  APV++
Sbjct: 235 GSPEVKGRMRRMQMEASQNGAKRRAALENVPQATAIVTNPTHFAVALRYVPGETTAPVIL 294

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+  +A  + +   +  +     P LAR+L+    I   IP   Y AVA ++  +Y  
Sbjct: 295 ALGKGPMALDIIERGRKAGVGTLRIPVLARALYFTGDIGQEIPDQLYGAVAAVLAHVYRL 354


>gi|103488400|ref|YP_617961.1| flagellar biosynthesis protein FlhB [Sphingopyxis alaskensis
           RB2256]
 gi|98978477|gb|ABF54628.1| type III secretion exporter [Sphingopyxis alaskensis RB2256]
          Length = 379

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 167/353 (47%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D KTE P++KK  D+  EG+  +SRE +    +LA   +++      + S   
Sbjct: 1   MAEGPDKDQKTEQPTAKKRADSTREGDVLMSRELATALMMLAAAGWIVAAGGWFVQSAGD 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L + T   + D +    L+ +        +     L +   +    +        
Sbjct: 61  LVRRGL-TLTAADVADFAPGEALMRN-GAEILLPLTSLFALALGAAVAGPAMLGSMGWRG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +     R++   G+KR++ +       K+  K+IL+G I    +  +   ++    ++
Sbjct: 119 KALHFKGNRINPMSGLKRMFGMQGATELGKAIAKVILLGGIGYWLVARSLPAIMSMAGSD 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + +  A   +   ++ +   +  + ++D+   + Q   +L MSK EIKDE++QS G P
Sbjct: 179 LIAAIGLAGKAIGHAMLALAGGLVVIALIDVPVQWFQRNKRLMMSKHEIKDEMRQSDGAP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K  Q+  A   +     +A S AT+++TNPTH+++ALRY    + APV+VA+G+  +A
Sbjct: 239 ELKQAQRQRAHEILSGSARKAVSEATVVLTNPTHFSVALRYRPGTDAAPVVVARGRGDVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A   N+P+ E P L R+++        IP   + AVA ++  ++  +
Sbjct: 299 LSIRELARAANVPMLEYPQLTRAIYFTARAGRTIPEELFVAVATVLAFVFQLE 351


>gi|237508977|ref|ZP_04521692.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|235001182|gb|EEP50606.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 352

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S   S+ A ++ L+        ++ + ++  L
Sbjct: 2   SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADYFGDAMRALVNGAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A  +      +  +   L      A   V+P L +  + GIG  ++Q    ++L  V P+
Sbjct: 62  AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +  
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + K L+++      +   D+      +  K+KM+K E+K E K   G+P++K  +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG +  A  +R+ 
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRA 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|126442638|ref|YP_001062991.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           668]
 gi|254194161|ref|ZP_04900593.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|254301605|ref|ZP_04969049.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|126222129|gb|ABN85634.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 668]
 gi|157811543|gb|EDO88713.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|169650912|gb|EDS83605.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
          Length = 352

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S   S+ A ++ L+        ++ + ++  L
Sbjct: 2   SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A  +      +  +   L      A   V+P L +  + GIG  ++Q    ++L  V P+
Sbjct: 62  AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +  
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + K L+++      +   D+      +  K+KM+K E+K E K   G+P++K  +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR           + A  ++ NPTHYA+A+RY   E+  P +VAKG +  A  +R+ 
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVVAKGLDEAAIALRRA 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|134282484|ref|ZP_01769188.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|134246041|gb|EBA46131.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
          Length = 352

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S   S+ A ++ L+        ++ + ++  L
Sbjct: 2   SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A  +      +  +   L      A   V+P L +  + GIG  ++Q    ++L  V P+
Sbjct: 62  AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +  
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + K L+++      +   D+      +  K+KM+K E+K E K   G+P++K  +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ 
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDEAAIALRRA 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|193062073|ref|ZP_03043169.1| EscU [Escherichia coli E22]
 gi|194426490|ref|ZP_03059045.1| EscU [Escherichia coli B171]
 gi|260845709|ref|YP_003223487.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009]
 gi|13447704|gb|AAK26703.1|AF200363_11 EscU [Escherichia coli]
 gi|18034508|gb|AAL57530.1|AF453441_14 EscU [Escherichia coli]
 gi|57434469|emb|CAI43886.1| EscU protein [Escherichia coli]
 gi|192932293|gb|EDV84891.1| EscU [Escherichia coli E22]
 gi|194415798|gb|EDX32065.1| EscU [Escherichia coli B171]
 gi|195183210|dbj|BAG66755.1| T3SS structure protein EscU [Escherichia coli O111:H-]
 gi|254692328|emb|CAR47969.1| EscU protein [Escherichia coli]
 gi|254692396|emb|CAR48039.1| EscU protein [Escherichia coli]
 gi|257760856|dbj|BAI32353.1| T3SS structure protein EscU [Escherichia coli O103:H2 str. 12009]
 gi|323163021|gb|EFZ48854.1| hypothetical protein ECE128010_0617 [Escherichia coli E128010]
          Length = 345

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 160/338 (47%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   +G+   S E       L    +   + +     V   ++  + S
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I+  + ++ L     ++P  L+  +  + + + Q   +  +  +KPS +
Sbjct: 63  LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S++  +K I+S+ ++   +KS  K++++  I             +F   N +  L   
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTLVVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
            F V  +   +L      +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ 
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++ K+A 
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++IP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|3435112|gb|AAC32325.1| flagellar protein FlhB [Rhodobacter sphaeroides]
          Length = 376

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 168/360 (46%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    KTE P+ K+ E A  +G+   S+E  +F++ LA  + LL      + ++  
Sbjct: 1   MAEGDDGQEKTEEPTQKRREQAREDGSIVTSKEVFVFAT-LAGGLALLMMIEGLLPALVR 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ---RIPV 117
                L       LE I+     +  L  +   ++I GL++ +       L+Q       
Sbjct: 60  GWSGYLVIEPGADLERIA-----MVRLGQAWREVLIAGLVVSVPLLALVLLVQSAMGGIN 114

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +     R++   G+KR+ S+  LV   K+  K+ L+  +  + L +    +    
Sbjct: 115 FSTKALSFKASRINPAAGLKRMVSLKALVELAKAVAKVALLIGVAVLVLRDELSPLDRLW 174

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +A P          + +++  +L+ +A +  LD+ W      + +KMS+QE+K+E K+S 
Sbjct: 175 TAAPGDAAAVLGAGLIRLVSALLIVLAVIGGLDLVWQAWSLTNSMKMSRQELKEESKESN 234

Query: 238 GNPIIKNRQKSIARSRI-----RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K R + +          R   ++   +AT I+TNPTH+A+ALRY+  E  APV++
Sbjct: 235 GSPEVKGRMRRMQMEASRNGARRRAALDDVPQATAIVTNPTHFAVALRYVPGETPAPVIL 294

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+  +A  + +   +  +     P LAR+L+    I   IP     AVA ++  +Y  
Sbjct: 295 AMGKGPMALDIIERGRKAGVGTVRIPLLARALYFTGDIGQEIPDGLDGAVAVVLAHVYRL 354


>gi|76819009|ref|YP_335586.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1710b]
 gi|126456589|ref|YP_001075938.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1106a]
 gi|167898600|ref|ZP_02486001.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|217425368|ref|ZP_03456862.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|226199022|ref|ZP_03794584.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|242312446|ref|ZP_04811463.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|254183801|ref|ZP_04890393.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|254186715|ref|ZP_04893231.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264656|ref|ZP_04955521.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
 gi|76583482|gb|ABA52956.1| SctU [Burkholderia pseudomallei 1710b]
 gi|126230357|gb|ABN93770.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106a]
 gi|157934399|gb|EDO90069.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184214334|gb|EDU11377.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|217391619|gb|EEC31647.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|225928797|gb|EEH24822.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|242135685|gb|EES22088.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|254215658|gb|EET05043.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
          Length = 352

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S   S+ A ++ L+        ++ + ++  L
Sbjct: 2   SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A  +      +  +   L      A   V+P L +  + GIG  ++Q    ++L  V P+
Sbjct: 62  AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +  
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + K L+++      +   D+      +  K+KM+K E+K E K   G+P++K  +
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ 
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|85706162|ref|ZP_01037257.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217]
 gi|85669326|gb|EAQ24192.1| flagellar biosynthetic protein FlhB [Roseovarius sp. 217]
          Length = 362

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 2/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+  +    K    S  K+++A  +G    S + +   S    L+ LL    P   +  +
Sbjct: 1   MAGEEDESEKPHEASQNKMDEARKKGEIARSADLNTAGSYGGLLLALLALGGPVSQTTGA 60

Query: 61  DLHVLLAS--ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
           +L VLL    A    L    H    L  +    +  V    LL     + + + QR  V+
Sbjct: 61  NLAVLLGQPHAFADLLFQGGHASAALGTVLTKVALAVSALFLLPAAVTLLTVIAQRAFVI 120

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
             + ++P   R++  E  K  +  + L  F KS  K+ L   ++ + L+     M+  + 
Sbjct: 121 APSKLEPKLSRINPIENAKNKFGASGLFEFGKSIAKLSLYCILLGLFLSYRMSEMVGALH 180

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           A P  I       + + L+++LL    +   D  W + +   + +MS  E++DE KQ+YG
Sbjct: 181 AEPAMIGVMIGQLIIEFLLVVLLITLAVGAADFTWQFFEHLRRQRMSHMELRDEFKQNYG 240

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P +K + +         +MM     + ++I NPTHYA+AL++ +    AP+ VAKG + 
Sbjct: 241 DPAVKQQHRRRGMDIASRQMMAEVPGSDVVIVNPTHYAIALKWSRAPGAAPICVAKGVDH 300

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           IA  +R +AYE  +P+ ++P+ AR+L     I   I P +Y AVA  I  
Sbjct: 301 IALAIRDLAYESGVPVQQDPATARALHATTEIGQEIDPTYYAAVAVAIRY 350


>gi|323530321|ref|YP_004232473.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1001]
 gi|323387323|gb|ADX59413.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1001]
          Length = 373

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 167/344 (48%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ K++ D   +G    S +    +++ A +  L F  +    ++ S +   L
Sbjct: 2   SEEKTEQPTDKRLRDTRKDGETSKSTDLVDAATMAAVVGVLAFAAANFGGALRSIVSTAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A+ R   D   +   L  L   A  +++P +    +  + + + Q    +    V P 
Sbjct: 62  EFASGR--HDEPLMFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K VS  +G+KRI+S   +++ +K  +K  ++G ++  ++      ++  +      +  
Sbjct: 120 LKHVSPVDGVKRIFSWRTVIDLVKMVIKAAIIGAVMWFTIKWILPLIVGSLYQPLPELSK 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  V KV  + +     + V+D+      +  KLKMSK E+K E KQ  G+P IK  +
Sbjct: 180 LFWSLVIKVFAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 239

Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K +AR         +    A  +I NPTHYA+A+RY   E+  P+++A+G +  A ++R+
Sbjct: 240 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAIRYAPAEHPLPLVIARGMDESAAQLRR 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A + N+PI   P +AR+L+K V ++  IP   ++ VA ++  +
Sbjct: 300 FARDANVPIIGNPPVARALYK-VGLDEPIPEELFETVAAILRWV 342


>gi|215488991|ref|YP_002331422.1| secretion system apparatus protein SsaU [Escherichia coli O127:H6
           str. E2348/69]
 gi|260869698|ref|YP_003236100.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128]
 gi|312967936|ref|ZP_07782148.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|2865279|gb|AAC38372.1| EscU [Escherichia coli]
 gi|54311603|emb|CAG17518.1| EscU protein [Escherichia coli]
 gi|215267063|emb|CAS11508.1| T3SS structure protein EscU [Escherichia coli O127:H6 str.
           E2348/69]
 gi|221361437|emb|CAX18590.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361494|emb|CAX18665.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361555|emb|CAX18745.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|257766054|dbj|BAI37549.1| T3SS structure protein EscU [Escherichia coli O111:H- str. 11128]
 gi|312287497|gb|EFR15405.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|323178898|gb|EFZ64474.1| hypothetical protein ECOK1180_2632 [Escherichia coli 1180]
          Length = 345

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 159/338 (47%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   +G+   S E       L    +   +       +   ++  + S
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I+  + ++ L     ++P  L+  +  + + + Q   +  +  +KPS +
Sbjct: 63  LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S++  +K I+S+ ++   +KS  K++++  I             +F   N +  L   
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
            F V  +   +L      +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ 
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++ K+A 
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++IP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|307725656|ref|YP_003908869.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1003]
 gi|307586181|gb|ADN59578.1| type III secretion protein, YscU/HrpY family [Burkholderia sp.
           CCGE1003]
          Length = 388

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 166/344 (48%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ K++ D   +G    S +    +++ A L  L F  +    ++ S +++ L
Sbjct: 24  SEEKTEQPTDKRLRDTRKDGETSKSADLVDAATMAAVLGVLAFAAAHFGGALRSIVNIAL 83

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              +     D   +   L  L   A  +++P +    +  + + + Q    +    V P 
Sbjct: 84  EFVSGS--HDQPLMFGKLFDLGKEALIVIVPCVGAAALAAVAALMPQVGFQIATKPVVPD 141

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K VS  +G KRI+S   +++ +K  VK  ++G ++  ++      ++  +      +  
Sbjct: 142 LKHVSPVDGFKRIFSWRTVIDLVKMIVKAAIIGAVMWFTIKWILPLIVGSLYQPLPELSK 201

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  + K+  + +     + V+D+      +  KLKMSK E+K E KQ  G+P IK  +
Sbjct: 202 LFWSLLVKLCAVAVAVFIVIGVVDVKLQRVLFLRKLKMSKDEVKRERKQMDGDPKIKAER 261

Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K +AR         +    A  +I NPTHYA+A+RY   E+  P+++A+G +  A ++R+
Sbjct: 262 KKLAREFATSAAPAQRVGFANALIVNPTHYAVAVRYAPAEHPLPLVIARGMDESAAQLRR 321

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A + N+PI   P +AR+L+K V I+  IP   ++ VA ++  +
Sbjct: 322 FARDANVPIIGNPPVARALYK-VGIDEPIPQELFETVAAILRWV 364


>gi|304392516|ref|ZP_07374456.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130]
 gi|303295146|gb|EFL89506.1| flagellar biosynthetic protein FlhB [Ahrensia sp. R2A130]
          Length = 354

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 118/346 (34%), Positives = 195/346 (56%), Gaps = 1/346 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D   +K+E PS KKI+DAL++G   +SRE ++ +S++   +++  F       ++ 
Sbjct: 1   MSDEDDG-SKSEEPSEKKIKDALDKGQTAVSREVAIVASLIVLTVFVSTFARDMAVGLSD 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L   A   ++   S    L   ++  AS  +   L++ ++  + S  IQ  P +  
Sbjct: 60  KLGGLWEHAGTIRILSGSDAATLSGSIAAEASLALAAFLIMVIIGALISAFIQAEPRMVA 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P ++R+S  +G KR++    L +F K   K+ +  T +   L      M+  +   
Sbjct: 120 DRITPKYERISPAKGAKRLFGQQGLFDFAKQLAKLSVATTAVVSVLAGAPEKMMQAMPLG 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P+ I       +  +L  ILL +  + V+D+ W+   W   L+MS +E+KDE+KQS G+P
Sbjct: 180 PYYIGDTVRDLLGGMLTAILLAMVFVAVVDVVWTRFSWRKGLRMSLKEVKDEVKQSDGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           I+K RQ+S+AR R R++MMEA   AT+++ NP H A+ALRY  T++ APV+VAKGQ  + 
Sbjct: 240 IVKARQQSVARDRARNRMMEAVPNATLVVANPIHVAVALRYDPTKDVAPVVVAKGQERLC 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++R+IA E  +P+ E   +AR L K VP+ + IP  FY  VA+LI
Sbjct: 300 WRIREIAEEAGVPVVENIPVARGLHKSVPLGALIPESFYVVVAELI 345


>gi|300310132|ref|YP_003774224.1| type III secretion HrcU transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072917|gb|ADJ62316.1| type III secretion HrcU transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 371

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 161/346 (46%), Gaps = 3/346 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D+K E P+ KKIEDA  +G   +SR+ +   +++A +   L   S    +V + +   +
Sbjct: 2   SDDKNEEPTDKKIEDAKKKGQIAVSRDLARLVTLVAVMEAALAADSLWRGAVFNLMEGGV 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               Q   +  + +   LT   +  +      L++  +  +  +  Q   ++    ++P 
Sbjct: 62  LGVGQ---DFQTAMNNQLTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIATEALEPK 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             +++   GIK+I+S   LV    +  K  L+  ++  ++      +       P  +  
Sbjct: 119 LDKLNPVNGIKQIFSKKKLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGGEPKDVYE 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +R +  +I++    L V+D     +     L M ++EIK E K+S G+P++K ++
Sbjct: 179 AFVTLLRNIFHLIIVVCLVLGVIDYAVQKYFHKKDLMMDQEEIKREFKESEGDPMVKGQR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR          T +A  ++ NPTH+A+A+ Y   E   P+++AKG++ IA+ M   
Sbjct: 239 KQLARQWANEAPAAKTEKANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEIAQAMIAR 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A+   IP+     LAR+L+     +  +P   Y+AVAQ+   ++  
Sbjct: 299 AHACGIPVIRHVWLARTLYATCQDDMPVPRSSYQAVAQVYAVVHEL 344


>gi|330505669|ref|YP_004382538.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
 gi|328919955|gb|AEB60786.1| flagellar biosynthesis protein FlhB [Pseudomonas mendocina NK-01]
          Length = 377

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 172/353 (48%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +   KTE  S+ K++ + ++G    S++ S   S++A L  L F     +  +  
Sbjct: 1   MSEQSSGQEKTEEASAHKLKKSKDDGQVARSKDLSTTISLIATLFILKFSAGLFLEGLND 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              +        ++  +  +  LL +  L   +L+   LLL  +  +   L+    V + 
Sbjct: 61  SFRLSYIQFGHSEI-GLDDLDTLLGYNMLVFIKLLA-PLLLTSLLVVVLSLVPGGWVFSA 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            +  P F +++   G+ RI+S  N    +KS +K++++  +  + +      ++    ++
Sbjct: 119 KNFAPKFSKLNPITGLGRIFSAQNWSELLKSVLKVLVLLGVGYVLVRAALPDLIALQRSS 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +  AF     + + ++L     + +DI    + +  KL+M+KQE K+E K   G P
Sbjct: 179 VLEAVSAAFDLTFNLTLCLMLIFVVFSFIDIPLQRYFFLKKLRMTKQERKEEHKNQEGRP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R K + R  ++ ++      A ++I NPTHYA+AL+Y   +  AP ++AKG +  A
Sbjct: 239 EVKARIKQLQRQMLQRQISRVIKNADVVIVNPTHYAVALKYDTQKAAAPFVLAKGVDETA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             MR++A +H++ + E P LAR+++    IN  IP   Y AVA ++  I   K
Sbjct: 299 LYMRQMAAKHSLEVVEIPPLARAIYFTTQINQQIPAPLYTAVAHVLTYILQLK 351


>gi|15804241|ref|NP_290280.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           EDL933]
 gi|15833834|ref|NP_312607.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. Sakai]
 gi|168748643|ref|ZP_02773665.1| EscU [Escherichia coli O157:H7 str. EC4113]
 gi|168753530|ref|ZP_02778537.1| EscU [Escherichia coli O157:H7 str. EC4401]
 gi|168759827|ref|ZP_02784834.1| EscU [Escherichia coli O157:H7 str. EC4501]
 gi|168766127|ref|ZP_02791134.1| EscU [Escherichia coli O157:H7 str. EC4486]
 gi|168772324|ref|ZP_02797331.1| EscU [Escherichia coli O157:H7 str. EC4196]
 gi|168779862|ref|ZP_02804869.1| EscU [Escherichia coli O157:H7 str. EC4076]
 gi|168785595|ref|ZP_02810602.1| EscU [Escherichia coli O157:H7 str. EC869]
 gi|168798676|ref|ZP_02823683.1| EscU [Escherichia coli O157:H7 str. EC508]
 gi|195936263|ref|ZP_03081645.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. EC4024]
 gi|208808072|ref|ZP_03250409.1| EscU [Escherichia coli O157:H7 str. EC4206]
 gi|208813986|ref|ZP_03255315.1| EscU [Escherichia coli O157:H7 str. EC4045]
 gi|208819764|ref|ZP_03260084.1| EscU [Escherichia coli O157:H7 str. EC4042]
 gi|209398003|ref|YP_002273176.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. EC4115]
 gi|217326036|ref|ZP_03442120.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. TW14588]
 gi|254795655|ref|YP_003080492.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. TW14359]
 gi|261225799|ref|ZP_05940080.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258844|ref|ZP_05951377.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285068|ref|YP_003501886.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. CB9615]
 gi|12518474|gb|AAG58844.1|AE005597_2 escU [Escherichia coli O157:H7 str. EDL933]
 gi|3414914|gb|AAC31525.1| L0046 [Escherichia coli]
 gi|13364055|dbj|BAB38003.1| type III secretion system EscU protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187771533|gb|EDU35377.1| EscU [Escherichia coli O157:H7 str. EC4196]
 gi|188016976|gb|EDU55098.1| EscU [Escherichia coli O157:H7 str. EC4113]
 gi|189002618|gb|EDU71604.1| EscU [Escherichia coli O157:H7 str. EC4076]
 gi|189359336|gb|EDU77755.1| EscU [Escherichia coli O157:H7 str. EC4401]
 gi|189364785|gb|EDU83204.1| EscU [Escherichia coli O157:H7 str. EC4486]
 gi|189369865|gb|EDU88281.1| EscU [Escherichia coli O157:H7 str. EC4501]
 gi|189374533|gb|EDU92949.1| EscU [Escherichia coli O157:H7 str. EC869]
 gi|189378742|gb|EDU97158.1| EscU [Escherichia coli O157:H7 str. EC508]
 gi|195957531|gb|ACG59642.1| type III secretion system protein EscU [Escherichia coli O157:H7]
 gi|195957590|gb|ACG59700.1| type III secretion system protein [Escherichia coli]
 gi|195957647|gb|ACG59756.1| type III secretion system apparatus protein SsaU [Escherichia coli]
 gi|208727873|gb|EDZ77474.1| EscU [Escherichia coli O157:H7 str. EC4206]
 gi|208735263|gb|EDZ83950.1| EscU [Escherichia coli O157:H7 str. EC4045]
 gi|208739887|gb|EDZ87569.1| EscU [Escherichia coli O157:H7 str. EC4042]
 gi|209159403|gb|ACI36836.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. EC4115]
 gi|217322257|gb|EEC30681.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. TW14588]
 gi|254595055|gb|ACT74416.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|255348328|gb|ACU09470.1| secretion system apparatus protein SsaU [Escherichia coli]
 gi|290764941|gb|ADD58902.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. CB9615]
 gi|320639370|gb|EFX08985.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. G5101]
 gi|320644814|gb|EFX13850.1| secretion system apparatus protein SsaU [Escherichia coli O157:H-
           str. 493-89]
 gi|320650078|gb|EFX18574.1| secretion system apparatus protein SsaU [Escherichia coli O157:H-
           str. H 2687]
 gi|320655425|gb|EFX23360.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661051|gb|EFX28487.1| secretion system apparatus protein SsaU [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666177|gb|EFX33183.1| secretion system apparatus protein SsaU [Escherichia coli O157:H7
           str. LSU-61]
          Length = 345

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 159/338 (47%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   +G+   S E       L    +   +       +   ++  + S
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I+  + ++ L     ++P  L+  +  + + + Q   +  +  +KPS +
Sbjct: 63  LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S++  +K I+S+ ++   +KS  K++++  I             +F   N +  L   
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
            F V  +   +L      +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ 
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++ K+A 
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++IP+ E+  LAR+L+K +     I   F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLI 337


>gi|225871939|ref|YP_002753393.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC
           51196]
 gi|225794521|gb|ACO34611.1| flagellar biosynthetic protein FlhB [Acidobacterium capsulatum ATCC
           51196]
          Length = 409

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 171/351 (48%), Gaps = 8/351 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              +TE  S ++ ++A  +G+ P SR+ +  +++LA  + L +               +L
Sbjct: 2   SGERTEKASPRRKQEAREKGDIPHSRDLTSAAAMLAGTLVLGWAGPMWEARWAGSYSEML 61

Query: 67  ASATQRKLEDISHIVFLLT--HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LNLNHV 123
             +  R   D   +  +L      ++    ++   L      + + + Q   V      +
Sbjct: 62  DLSQPRSWLDGQMVEKMLAIRAAMMTVLWPLVVMFLACFAAAVLAGVAQGRGVQFAGEAI 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P  +R++    +++ +S   L   +KS + +  +   +   + E        I     +
Sbjct: 122 APKIERLNPLTVLQQTFSSRGLTRMLKSALPVAALACFVAGKVREQ-----TAIPVFSLT 176

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L   F ++  +++     +   + +D    +  W  +L+MSKQE+++E KQ+ GNP ++
Sbjct: 177 RLPSLFTSMYSLMVAAAAVLFVWSAIDYAVEWWSWEQRLRMSKQEVREEFKQTEGNPEVR 236

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R  SI R   R  +    SRA+++ITNPTHYA+AL++     +AP ++AKG++L+A+++
Sbjct: 237 RRIASIRRQLRRKALRADVSRASVVITNPTHYAVALQFSLELMEAPRVLAKGRDLLAEQI 296

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           ++ A    +P+ E P LAR+L++QV +  +IP   Y AVA ++  +Y + +
Sbjct: 297 KQEARWAGVPLVENPPLARALYRQVEVGQSIPFALYAAVAAILAWLYRRDM 347


>gi|167573406|ref|ZP_02366280.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 366

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 172/350 (49%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      KTE PS KK++    +G    S++ +   ++ A +  L    S     ++ 
Sbjct: 1   MAE-----EKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTAGESMLGGGLSR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L      +       +  L  L+ SA+ +++P +   ++ G+ S   Q   ++ L
Sbjct: 56  VMRTALDFVHGER--TPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  ++   GIKRI+S+ +L+  +K  VK +++  ++   +T  +  ++  +   
Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +    +  + K+L ++++ ++ L   D   +   +  + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEGDP 233

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             K  ++ +AR         +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  
Sbjct: 234 HTKGERRRLAREIATSAAPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +R+ A+   +PI   P +AR+L++ +  ++AIP   ++ VA ++  +
Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAILRWV 342


>gi|167566304|ref|ZP_02359220.1| type III secretion system protein [Burkholderia oklahomensis EO147]
          Length = 372

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 172/350 (49%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      KTE PS KK++    +G    S++ +   ++ A +  L    S     ++ 
Sbjct: 1   MAE-----EKTEEPSEKKLKKVREKGQVAKSKDIADAMTLAAAIGVLTAGESMLGGGLSR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L      +       +  L  L+ SA+ +++P +   ++ G+ S   Q   ++ L
Sbjct: 56  VMRTALDFVHGER--TPQAALSALHDLAASAALMMLPFVAGAIVAGVVSQAPQAGFLVTL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  ++   GIKRI+S+ +L+  +K  VK +++  ++   +T  +  ++  +   
Sbjct: 114 EPVMPKFDAINPMAGIKRIFSLKSLLELVKMIVKAVVLACVMWKMMTSLFPLVVASVYEA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +    +  + K+L ++++ ++ L   D   +   +  + +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLLGVVVIVVSVLAAADYKIARVMFIRENRMTKEETKREHKESEGDP 233

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             K  ++ +AR         +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  
Sbjct: 234 HTKGERRRLAREIATSAAPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +R+ A+   +PI   P +AR+L++ +  ++AIP   ++ VA ++  +
Sbjct: 294 ALALRRHAHALGVPIVGNPPVARALYR-IERDAAIPEELFETVAAILRWV 342


>gi|329901844|ref|ZP_08272932.1| Type III secretion inner membrane protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548981|gb|EGF33597.1| Type III secretion inner membrane protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 365

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 159/345 (46%), Gaps = 3/345 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+EDA  +G  P+SR+ +  ++     + L F      ++    L  L  +
Sbjct: 3   EKTEQPTDKKLEDAREKGQVPVSRDMARLATFFVIGL-LAFVTEKLWHASIDSLFEL--A 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  +  ++T        +     +   +  I ++  Q   +L+   ++P   
Sbjct: 60  FLRIGAPFVPAMYEMVTVAGKLLLVIFGAIAITGTVVAIMAFWGQFGILLSAKALEPKLD 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++  +G+ +++S   LV  + S  K +L+G ++ + + +   T+L      P  + Y  
Sbjct: 120 KLNPVQGMMQLFSKRKLVELVVSLAKAVLIGYVLYLVILDQLPTILKLSGGTPRDVYYGF 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +  + +      +++D+    H     L MS  EIK E K+S G+P++K  +K 
Sbjct: 180 VEMLFSIFKIAVGICFAFSLVDLVSQRHFHTKSLMMSMDEIKREYKESEGDPLVKGTRKQ 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +A+     +    T  A  ++ NPTH+A+AL Y       P+++AKG++  A  M   A+
Sbjct: 240 LAQEWANEEPASRTQDANAVVVNPTHFAVALFYDFDAPSVPMVLAKGKDETAHAMIARAH 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           ++ IP+     LAR+L+     +  IP   Y++VA +   I   +
Sbjct: 300 QYKIPVIRHVWLARTLYATAKPDHPIPKASYESVAHVYAVIQEMR 344


>gi|323189404|gb|EFZ74685.1| hypothetical protein ECRN5871_2292 [Escherichia coli RN587/1]
          Length = 345

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 158/338 (46%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   +G+   S E       L    +   +       +   ++  + S
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I+  + ++ L     ++P  L+  +  + + + Q   +  +  +KPS +
Sbjct: 63  LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S++  +K I+S+ ++   +KS  K++++  I              F   N +  L   
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFAYFTGLNAYQALVVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
            F V  +   +L      +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ 
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++ K+A 
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++IP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 300 LYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|48479060|gb|AAT44853.1| transmembrane protein [Burkholderia pseudomallei]
          Length = 352

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 166/343 (48%), Gaps = 3/343 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S   S+ A ++ L+        ++ + ++  L
Sbjct: 2   SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A  +      +  +   L      A   V+P L +  + GIG  ++Q    ++L  V+P+
Sbjct: 62  AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVRPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +  
Sbjct: 120 LGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + K L+++      +   D+      +  K+KM+K E+K E K   G+P++K   
Sbjct: 180 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGEC 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ 
Sbjct: 240 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 300 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 341


>gi|312115253|ref|YP_004012849.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100]
 gi|311220382|gb|ADP71750.1| type III secretion exporter [Rhodomicrobium vannielii ATCC 17100]
          Length = 353

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/352 (33%), Positives = 205/352 (58%), Gaps = 1/352 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++N   DNKTEAPS K++ D+L++   P SRE +  +++ A +++L+         V  
Sbjct: 1   MADNSETDNKTEAPSEKRLRDSLDKDGGPSSREVNSAAALFALVLFLMTMAPADFGEVVK 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L V +   +   LE+ +   F+L    L+     +P +L+ +   + +   Q  P L  
Sbjct: 61  NLSVFIEDPSGFSLENGADAFFILQLAGLTIFNFALPLVLMLLAATLLASFAQNPPTLIF 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N + P   R+S + G+KR+++ + +V+ +KSF+K  +V     ++       +L     +
Sbjct: 121 NKIAPDLARISPQAGLKRLFAFDAVVDLLKSFIKFGIVAIAFYVAFQGGAAALLVL-QTD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +        K +++  L  A L V D+ W+  +W  KLKMS+Q++KDE KQS G+P
Sbjct: 180 SASTIELIKRLAFKAILICALACAVLAVADVFWTRFRWLRKLKMSRQDLKDEHKQSEGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ R ++IAR+R+R  MM +   AT++I NPTHYA+ALRY++ ++ AP  +AKG+N +A
Sbjct: 240 MLRARARAIARARVRRNMMTSVPNATVVIANPTHYAVALRYVRGQDRAPQTLAKGKNKLA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++R IA ++N+P+ E  +LA+SL   V ++  IP  FYKAVA++I  I  K
Sbjct: 300 LRIRSIAEDNNVPVVENKALAKSLHDAVRVDQPIPHEFYKAVAEVIIYINKK 351


>gi|84514803|ref|ZP_01002166.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53]
 gi|84510962|gb|EAQ07416.1| Flagellar protein FlhB [Loktanella vestfoldensis SKA53]
          Length = 383

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 169/360 (46%), Gaps = 12/360 (3%)

Query: 1   MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M++       KTE P+ K++E A  +G    S+E  + S++    + L F   P +  + 
Sbjct: 1   MADEASDGQEKTEEPTQKRLEKAKEDGQVASSKELFVLSTLSVGFL-LYFGLLPFLSGLL 59

Query: 60  SDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            +   LL  + +  L D  I +       +   +    +P L++ ++  +    +     
Sbjct: 60  LEWSALLRFSGEAGLHDEIIRNSSTSFAFIFWKSVIFALPLLVIIVLTQMA---MSGSIN 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            + + +     R++   G+KR++S+  LV  +K+  K+  +        +     +L   
Sbjct: 117 WSASALAFKGSRINPVNGLKRMFSVKALVEMLKAVGKVASLIGAAIFVFSSEVDKLLTSQ 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           + +    L         ++I+ LL +A + + D+ +  +    KLKM+ QE+KDE KQ+ 
Sbjct: 177 ATHLFGGLSRLGDVFIFLMIVFLLVLAVIAMFDVVYQQYDNNKKLKMTLQELKDESKQTE 236

Query: 238 GNPIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K + + +      R++ R + ME    AT IITNP H+A+AL+Y      AP ++
Sbjct: 237 GSPEVKAKIRRLQMTAGSRAKQRREAMEQVPSATAIITNPIHFAVALKYEIGTRGAPTIL 296

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+   A+++ ++  E  + +F    LAR+LF    I   IPP  Y AVA ++  IY  
Sbjct: 297 AMGRGHQAQEIIRLGKEAGVTVFSNELLARALFFAGRIGDEIPPPLYTAVAAVLAFIYQL 356


>gi|302338096|ref|YP_003803302.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM
           11293]
 gi|301635281|gb|ADK80708.1| flagellar biosynthetic protein FlhB [Spirochaeta smaragdinae DSM
           11293]
          Length = 379

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 173/349 (49%), Gaps = 8/349 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +KI  A  EG    S E +    +L  ++ L         ++   L   
Sbjct: 28  EDEGRTEDPTEQKIRKAREEGKVAKSSEFTSSLVLLFPIVALGILAPRMFGTMEEMLRYY 87

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L+  ++  L     + F    +     RLV P   + +   +   +IQ   +     + P
Sbjct: 88  LSLLSEADLTGEQIVAFFRYFI-----RLVAPVASVAVAAALFGNIIQVGFLFTSKPITP 142

Query: 126 SFKRVSLREG--IKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            F ++  R G  I+R + S   L N MKS +K++++G I  I++  N      F++A   
Sbjct: 143 DFSKIVPRFGKFIQRSFLSGEALFNLMKSILKVLIIGIIAYINIKNNLDIFAFFVNAPFE 202

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
                      ++L+   + +  L++ D  +   Q    LKM+KQEIK+E K   G+P+I
Sbjct: 203 VAFSTIGSVAFRILVESSIALLALSLPDYLFQRRQHRESLKMTKQEIKEERKTMEGDPLI 262

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K+R +   R  +   M+     A +IITNPTH+A+ + + +    AP+++AKGQ+ +A++
Sbjct: 263 KSRLRERMRDVLNRNMIRKVPEADVIITNPTHFAVGMEWERERMVAPMVIAKGQDNMAQR 322

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++ IA EH++PI E   LAR+L+ +V +   IP  +Y+ +A ++ ++Y 
Sbjct: 323 IKAIAREHDVPIVENKPLARALYAEVEVGEVIPERYYEVMATILAEVYR 371


>gi|320015476|gb|ADV99047.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 259

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 131/224 (58%)

Query: 130 VSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
           +S   G+KR++S   L   +K+ +K  LVG +  + L  N+  M+  I+A P + L  A 
Sbjct: 1   MSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDAL 60

Query: 190 FTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSI 249
             +    ++++L ++ +   D+ +       KL+M+KQ+I+DE K   G+P +K R +  
Sbjct: 61  HLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQ 120

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
            R+  R +MM    +A +I+TNPTHYA+AL+Y +++  AP ++AKG   +A ++R++  E
Sbjct: 121 QRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAE 180

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           H IP+ E P LAR+LF+   +   IP   Y AVA+++  +Y  K
Sbjct: 181 HRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLK 224


>gi|317014180|gb|ADU81616.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           Gambia94/24]
          Length = 358

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSTKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|222100640|ref|YP_002535208.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM
           4359]
 gi|221573030|gb|ACM23842.1| Flagellar biosynthesis protein FlhB [Thermotoga neapolitana DSM
           4359]
          Length = 315

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           +  + L   + L  F   GI S+  D+   L+      LE+   ++  L +       ++
Sbjct: 1   MAITFLIFAVVLKIFGPQGIASIARDVSAFLS------LEETEDLLSALGYF-KDILLMI 53

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
              +L  M  GI    IQ   +L    ++P   R++  EG KR++S+ ++V  +K+ +K+
Sbjct: 54  GALMLFTMAAGILVGAIQTRFLLAFKTLRPDLNRINPVEGFKRLFSLRSVVELLKAVMKV 113

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
           +++G ++   L + ++ M+            + +    +V +   + +  L V D  +  
Sbjct: 114 VVIGVVVYQVLKDRWYEMVLLSDMELEDAFLNLWDVASEVSLKSGIALLALAVFDYAYQR 173

Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
             +   ++M+KQE+KDE K+  GNP +K RQ+ +    +R +MME   +A ++ITNPTH+
Sbjct: 174 WDYEKSIRMTKQEVKDEFKEVEGNPEVKRRQRQMMYDILRRRMMEEVPKADVVITNPTHF 233

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y     +AP +VAKG + +A K+ +IA E+ + I   PSLAR+L+ +V I   IP
Sbjct: 234 AVALKYDPDTMNAPTVVAKGVDHLALKIIEIARENGVAIVRNPSLARTLYYRVEIGEEIP 293

Query: 336 PVFYKAVAQLIYKIYHKK 353
             FY+ VA+++  +Y +K
Sbjct: 294 VEFYRIVAEVLVYVYTRK 311


>gi|283786649|ref|YP_003366514.1| T3SS structural protein EscU [Citrobacter rodentium ICC168]
 gi|282950103|emb|CBG89738.1| T3SS structural protein EscU [Citrobacter rodentium ICC168]
          Length = 345

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 157/338 (46%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D   +G+   S E       L    +   + +     V   ++  + S
Sbjct: 3   EKTEKPTPKKIRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFIEVAGVVNTTINS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I   L  +       V+P +L   +  + + + Q   +  +  +KPS +
Sbjct: 63  LNEPFLYSIHEI---LGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S++  +K I+S+ ++   +KS  K++++  I            ++F   N +  L   
Sbjct: 120 KISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQTLVII 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
            F +  +   +L      +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ 
Sbjct: 180 AFFIFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        +     ++T+I+ NPTH A+ L Y   E   P+++   ++  A ++ K+A 
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAKALQIIKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +NIP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 300 LYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|254779257|ref|YP_003057362.1| flagellar biosynthesis protein FlhB [Helicobacter pylori B38]
 gi|254001168|emb|CAX29127.1| Flagellar biosynthesis and export/adhesin [Helicobacter pylori B38]
          Length = 358

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSTKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLTKDTFLLLLPILIILMVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|89902466|ref|YP_524937.1| type III secretion exporter [Rhodoferax ferrireducens T118]
 gi|89347203|gb|ABD71406.1| type III secretion exporter [Rhodoferax ferrireducens T118]
          Length = 385

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 161/350 (46%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
             +  ++    S +K++ AL++G    SR+    + +    + L+         +   L 
Sbjct: 2   EPSSQDRNLPASERKLQKALDDGQVSRSRDLGHLAVLGTGALSLMALAPLMFDRLRVLLR 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             L S     + + + ++  +  ++ +     +    +  +  + S +     V +L  +
Sbjct: 62  QQL-SFDALAVSNPTTMITRMQDMATAGLIGCVIFAAITTVAVLLSSIAAGGWVSSLKPI 120

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P F R++   G+ R+++       +K      ++ T+ T  L+     +   +     +
Sbjct: 121 MPDFSRLNPLTGMGRMFTKEKFTEVLKMSFVAAMLITLGTTYLSSTIHALAMLVLQPSRA 180

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            L      +   + ++LL +  + ++D+        S++KMS QE+K E K+S GNP +K
Sbjct: 181 ALPMLTEWLTSGMALLLLVVLLVAMVDVPLQSFLHKSRMKMSHQEMKQEHKESDGNPQMK 240

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            + +   R       + A  +A  ++ NPTH+A+A++Y      AP +V+KG +L+A K+
Sbjct: 241 GKLRQRQREISHGNSVGAVPKADFVLMNPTHFAVAIKYDDKTMRAPQVVSKGADLLAMKI 300

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R IA  + IP+ + P LAR+L+    ++  IP   Y AVAQ++  IY  K
Sbjct: 301 RDIAKNNAIPVLQSPMLARALYAHAELDQDIPASLYTAVAQVLAYIYRLK 350


>gi|300697466|ref|YP_003748127.1| Hypersensitivity response secretion protein hrcU, type III
           secretion exporter [Ralstonia solanacearum CFBP2957]
 gi|299074190|emb|CBJ53735.1| Hypersensitivity response secretion protein hrcU, Type III
           secretion exporter [Ralstonia solanacearum CFBP2957]
          Length = 354

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 156/347 (44%), Gaps = 10/347 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLH 63
            D KTE P+ KK+EDA  +G    S + +    +L+  + L     FF     ++     
Sbjct: 2   SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLD--- 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             LA         +  +   L H++L    + +P   +F +    +   Q   VL+   V
Sbjct: 59  --LALDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPV 116

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +     ++   G+KRI+S+ ++++ +K  +K   V   +   +      ++     +   
Sbjct: 117 ELKMNAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMD 176

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I       + ++L         L   D G     +    +MSK E+K E K S G+P IK
Sbjct: 177 IAEIGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236

Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  
Sbjct: 237 GERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPDEYGLPRIIAKGVDDEALA 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +R+ A    IPI   P LAR+L++ V +  A+P   ++ VA+++  +
Sbjct: 297 LREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342


>gi|170698356|ref|ZP_02889430.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
 gi|170136695|gb|EDT04949.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
          Length = 352

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 164/345 (47%), Gaps = 7/345 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++    EG    S +    +S+ + ++ L    + G + +   L  ++
Sbjct: 2   SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVL----TAGQHYLADTLRAVV 57

Query: 67  ASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A        ++  +   L H+ L A  L+     + ++    +   Q    ++L  V 
Sbjct: 58  KEAIDFTHGPRELQDLSVALVHMGLQALGLLCGIAAVALIAAFLALAPQTGLKISLKAVM 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P    VS   G +RI+S+N+ ++ +K  VK  ++  ++  ++      +   +  +   +
Sbjct: 118 PKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVPQL 177

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +   +  +  V+++ L     +   D       +  K +MSK E+K E K+S GNP +K 
Sbjct: 178 IAVLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKG 237

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            +K +AR   +       SRA +++ NP HYA+ALRY  TE   PV++AKG +  A ++R
Sbjct: 238 ERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLDEQALRLR 297

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           + A    +PI   P +AR L K VP+N  IP   ++ VA ++  +
Sbjct: 298 QQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341


>gi|167841178|ref|ZP_02467862.1| secretion system apparatus protein SsaU [Burkholderia thailandensis
           MSMB43]
          Length = 359

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 3/344 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK  DA  +G    S E +  + +   L Y LF   P +      L    AS
Sbjct: 3   EKTEQPTAKKRADARRKGQVAKSVEITSGAQLAVLLGYFLFE-GPHLMQAFETLTR--AS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 + ++ +   L  L    +R VI   L+ +   + + + Q  P+L    +KPS  
Sbjct: 60  IDVINDDLVTALGHWLGVLGAVVTRFVIGLALVVIGVTVIAVVAQIGPLLASEALKPSVD 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S+ +L  F KS  K+ ++  I    + E   ++      +       +
Sbjct: 120 KINPINNAKQMFSMKSLFEFAKSLFKVGVLSLIFYYLIREYAPSLQFLPLCSVECGFAVS 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +   ++ F     + D  +  +    +L MS ++IK E K S GNP +K+++K 
Sbjct: 180 VRLLYWMWAALIGFYVLFGLADFAFQRYNTTKQLMMSIEDIKQEFKNSEGNPEMKHKRKE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I R      +    +++T+++ NPTH A+ L Y       P +V  G    A  +  +A 
Sbjct: 240 IHREVQSGSLASNVAKSTVVVRNPTHVAVCLYYDPIAAPLPEVVETGHGKRALHIVALAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
              +P+ E   +AR+L  ++ +   IPP  ++ VA ++  + H 
Sbjct: 300 RAGVPVVENVPVARALAARLAVGQVIPPDLFEPVAHILRLVMHL 343


>gi|15611774|ref|NP_223425.1| flagellar biosynthesis protein FlhB [Helicobacter pylori J99]
 gi|12230110|sp|Q9ZL73|FLHB_HELPJ RecName: Full=Flagellar biosynthetic protein flhB
 gi|4155273|gb|AAD06292.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 358

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  +++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKILDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   ++ +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKSNVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|259417182|ref|ZP_05741101.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B]
 gi|259346088|gb|EEW57902.1| flagellar biosynthesis protein FlhB [Silicibacter sp. TrichCH4B]
          Length = 363

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 158/341 (46%), Gaps = 2/341 (0%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           K+  P+ +K+  A  EG+ P S +    +S L  LI         + ++ + L  ++   
Sbjct: 10  KSFEPTPEKLRKARLEGDVPKSNDLLQAASYLGLLIAFYTAGGSSVEALGTVLMSMIDQP 69

Query: 70  TQRK--LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            +             +      +A   V+   ++     + +   Q+  V     ++P  
Sbjct: 70  DRLAPVFFGDGIAAPVAGEFISAALTSVMAWFIVPAALVLLAVFAQKAMVFAPKRIEPKL 129

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            R+S+ +  K  +  + L  F KSF K++L    + I L+     M+  +  +P+S++  
Sbjct: 130 SRLSVIKNAKNKFGRSGLFEFAKSFFKLLLYSITLGIYLSWRLPEMIASVGTSPYSVVPF 189

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 + LI+ L+    + ++D  +   ++  K  MS++++ DE+K S G+P  K ++K
Sbjct: 190 LVQLAMEFLILTLIIALAIGLVDAPFQQAEFIRKNMMSRKDVMDEMKNSEGDPHTKGQRK 249

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R  +  ++  A   A ++I NPTHYA+AL++ +    AP  VAKG + +A  +R+IA
Sbjct: 250 QKGREIVSKQIAAAVPEADVVIVNPTHYAVALKWSRVSGSAPECVAKGVDGVAAMIREIA 309

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
            E+ +P+  +P  AR+L+  V +   I    Y  VA  I  
Sbjct: 310 QENGVPLHSDPPTARALYATVEVGDEIAEEHYAPVAAAIRF 350


>gi|260858250|ref|YP_003232141.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368]
 gi|17384638|emb|CAC81850.1| EscU protein [Escherichia coli]
 gi|257756899|dbj|BAI28401.1| T3SS structure protein EscU [Escherichia coli O26:H11 str. 11368]
          Length = 345

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 161/338 (47%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   +G+   S E       L    +   + +     V   ++  + S
Sbjct: 3   EKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTIDS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I+  + ++ L     ++P  L+  +  + + + Q   +  +  +KPS +
Sbjct: 63  LNRPFLYAIREILGAVLNIFL---LYILPISLIVFVGTVTTGVSQTGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S++  +K I+S+ ++   +KS  K++++  I             +F   N +  L   
Sbjct: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTLVVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
            F V  +   +L      +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ 
Sbjct: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        +     ++T+I+ NPTH A+ L Y   E   P+++  G++  A ++ K+A 
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            ++IP+ E+ +LARSL+K +     I   F++ VAQLI
Sbjct: 300 LYDIPVIEDITLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|308184555|ref|YP_003928688.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180]
 gi|308060475|gb|ADO02371.1| flagellar biosynthesis protein FlhB [Helicobacter pylori SJM180]
          Length = 358

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPLLIILMVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALWLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346


>gi|189911977|ref|YP_001963532.1| endoflagellar biosynthesis protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776653|gb|ABZ94954.1| Endoflagellar biosynthesis protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
          Length = 444

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 177/352 (50%), Gaps = 5/352 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + +TE PS ++  +   +GN P S E +    +L     L       I +    +   
Sbjct: 92  ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 151

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L      +         +L+ +S     L+ P L + ++F I   ++Q   + +   +  
Sbjct: 152 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 211

Query: 126 SFKRVSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
            F R+S     KR + +   L N +KS  K++L+G I  I ++ ++  +L   +      
Sbjct: 212 RFDRISP--NFKRVLPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGNMGMMQA 269

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +    ++  K+++   L +  + V D  +   ++   LK +  E K E+K+  G+P++KN
Sbjct: 270 ITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSGDPVMKN 329

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R+  +AR  ++  M+    +A ++ITNPTHY++AL Y    + AP ++AKG+N +A ++R
Sbjct: 330 RRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENRLALEIR 389

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354
           +IA E+++PI E P  AR L+ QV +   IP  F++AV Q++  +  + KK+
Sbjct: 390 RIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 441


>gi|34498461|ref|NP_902676.1| flagellar biosynthesis protein FlhB [Chromobacterium violaceum ATCC
           12472]
 gi|34104316|gb|AAQ60675.1| flagellar biosynthetic protein flhB [Chromobacterium violaceum ATCC
           12472]
          Length = 379

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 166/353 (47%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    D+KTE  + +++  A  +G  P S++ +    +    + ++F+ +PG      
Sbjct: 1   MAEA-RQDDKTEKATPQRLRKAREQGQVPRSKDLAAALGL-LLALKMMFWLAPGWLDDFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L  ++   +    + +  L     L   +++ P  ++ +   + S L     V  L
Sbjct: 59  QLFALAFASLSGQGALENSLSKLFGGTLLLLIKMLAPLAVIPLTMLLLS-LFPGGWVFVL 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N + P F+R++    + R+ S  +     KS  K +++G ++    ++         S  
Sbjct: 118 NQISPKFERMNPLAHLSRLASPKHASEIGKSIAKALVLGWLLYRVASDALHDFFALHSMP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A   +   L+ +        + D+      +  + +MSKQEIK+E K + G P
Sbjct: 178 LLPTLAGAADLLLSCLLKLAAVFLLFALADLPLQVFLFLKQQRMSKQEIKEEHKNTEGRP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            ++ R + + +   +  + +A   A +II NP+HYA+AL+Y +   +AP +VAKG + +A
Sbjct: 238 EVRQRIRQLQQQMAQRGVRKALPGADVIIVNPSHYAVALKYDENRAEAPFIVAKGVDEMA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             +R++A E  + +   P LAR+++    +N  IP   Y+AVAQ++  +   K
Sbjct: 298 LYIRQLAEEMKLTVLPLPPLARAVYHTTQVNQQIPAPLYRAVAQVLTYVLQLK 350


>gi|172064924|ref|YP_001815636.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
 gi|171997166|gb|ACB68083.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
          Length = 352

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 164/345 (47%), Gaps = 7/345 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++    EG    S +    +S+ + ++ L    + G + +   L  ++
Sbjct: 2   SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVL----TAGQHYLADTLRAVV 57

Query: 67  ASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A        ++  +   L H+ L A  L+     + ++    +   Q    ++L  V 
Sbjct: 58  KEAIDFTHGPRELQDLSVALVHMGLQALGLLCGIAAVALVAAFLALAPQTGLKISLKAVM 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P    VS   G +RI+S+N+ ++ +K  VK  ++  ++  ++      +   +  +   +
Sbjct: 118 PKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDQSVPQL 177

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +   +  +  V+++ L     +   D       +  K +MSK E+K E K+S GNP +K 
Sbjct: 178 IAVLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKG 237

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            +K +AR   +       SRA +++ NP HYA+ALRY  TE   PV++AKG +  A ++R
Sbjct: 238 ERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGLDEQALRLR 297

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           + A    +PI   P +AR L K VP+N  IP   ++ VA ++  +
Sbjct: 298 QQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341


>gi|210134972|ref|YP_002301411.1| flagellar biosynthesis protein FlhB [Helicobacter pylori P12]
 gi|210132940|gb|ACJ07931.1| flagellar biosynthetic protein [Helicobacter pylori P12]
          Length = 358

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 103/353 (29%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALALISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L+K V +N+AIP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYKDVKLNAAIPEELFEAVAIVFAQVAKLE 346


>gi|89069813|ref|ZP_01157148.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus
           HTCC2516]
 gi|89044614|gb|EAR50730.1| flagellar biosynthetic protein FlhB [Oceanicola granulosus
           HTCC2516]
          Length = 359

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 2/354 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS +D   +K+  P+ KK++DA  +G+ P S + +  ++    L+  L      +  + S
Sbjct: 1   MS-HDDGADKSFEPTQKKLDDARRKGDLPRSADLTTAAAYAGFLLAALALGGGVVDGMGS 59

Query: 61  DLHVLLASATQRKLEDISH-IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L  L+  A     E  +         + L+A+  + P LL      + + + QR  V  
Sbjct: 60  LLRALVERADALSAEMFAGGAAPRSGAVILAAAGALAPILLGPAAAALVAVIAQRGLVFA 119

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + + P   R+S     K+ +    L  F KSF K+ +    + + L+     ++  I  
Sbjct: 120 PSKLAPKLSRISPLSTAKQKFGRTGLFEFAKSFAKLTIYSITLGLFLSARLPDIVGTIGM 179

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P  I       +  +L++++L  A +  LD+ +       K +MS++E+ DE+KQS G+
Sbjct: 180 APAIIAGELLRLMLDLLLVVVLIAAAIGALDLLFQRADHLRKNRMSRKEVTDEMKQSEGD 239

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K +++  A +    +MM     A ++I NPTHYA+AL++ +    APV VAKG + I
Sbjct: 240 PAMKQQRRQKAVAIATTQMMADVPTADVVIVNPTHYAVALKWDRGSPGAPVCVAKGVDAI 299

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R++A EH IP+  +P  AR+LF +  I + I P  Y+AVA  I      +
Sbjct: 300 AARIRELALEHVIPLHSDPPTARALFAETEIGAEIHPDHYRAVAAAIRFAERLQ 353


>gi|115360600|ref|YP_777737.1| type III secretion system protein HrcU [Burkholderia ambifaria
           AMMD]
 gi|115285928|gb|ABI91403.1| type III secretion exporter [Burkholderia ambifaria AMMD]
          Length = 352

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 164/345 (47%), Gaps = 7/345 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++    EG    S +    +S+ + ++ L    + G + +   L  ++
Sbjct: 2   SDEKTEEPTDKKLDKVREEGQVAKSSDLVEVASLGSIVLVL----TAGQHYLADTLRAVV 57

Query: 67  ASATQRKL--EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A        ++  +   L H+ + A  L+     + ++    +   Q    ++L  V 
Sbjct: 58  KEAIDFTHGPRELQDLSVALVHMGVQALGLLCGIAAVALVAAFLALAPQTGLKISLKAVM 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P    VS   G +RI+S+N+ ++ +K  VK  ++  ++  ++      +   +  +   +
Sbjct: 118 PKLASVSPGSGFQRIFSMNSAIDLVKMVVKAAILVAVMWQTIKSAMPVVASALDRSVPQL 177

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +   +  +  V+++ L     +   D       +  K +MSK E+K E K+S GNP +K 
Sbjct: 178 IAVLWSVLMHVVVVALGVFIAIGAFDYKLQKWLFIRKNRMSKDEVKREHKESDGNPEVKG 237

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            +K +AR   +       SRA +++ NP HYA+ALRY  TE   PV++AKG +  A ++R
Sbjct: 238 ERKRMAREMSQEGPKGGVSRANVVVVNPVHYAVALRYDPTEFPLPVVLAKGVDEQALRLR 297

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           + A    +PI   P +AR L K VP+N  IP   ++ VA ++  +
Sbjct: 298 QQAMHARVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 341


>gi|207724585|ref|YP_002254982.1| hrp protein hrcu [Ralstonia solanacearum MolK2]
 gi|206589807|emb|CAQ36768.1| hrp conserved protein hrcu [Ralstonia solanacearum MolK2]
          Length = 354

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 156/347 (44%), Gaps = 10/347 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLH 63
            D KTE P+ KK+EDA  +G    S + +    +L+  + L     FF     ++     
Sbjct: 2   SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLD--- 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             LA         +  +   L H++L    + +P   +F +    +   Q   VL+   V
Sbjct: 59  --LALDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPV 116

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +     ++   G+KRI+S+ ++++ +K  +K   V   +   +      ++     +   
Sbjct: 117 ELKMNAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMD 176

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I       + ++L         L   D G     +    +MSK E+K E K S G+P IK
Sbjct: 177 IAEIGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236

Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  
Sbjct: 237 GERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPQEYGLPRIIAKGVDDEALA 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +R+ A    IPI   P LAR+L++ V +  A+P   ++ VA+++  +
Sbjct: 297 LREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342


>gi|307637461|gb|ADN79911.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
 gi|325996051|gb|ADZ51456.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
 gi|325997646|gb|ADZ49854.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
          Length = 358

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLMSVFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|269303197|gb|ACZ33297.1| putative Yop translocation protein U [Chlamydophila pneumoniae
           LPCoLN]
          Length = 360

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 84/345 (24%), Positives = 150/345 (43%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       +     +   L  +L+
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLS 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A  R   D    +F L +  +      +P L    + G+    +   P  +    KP  
Sbjct: 62  QAPTR--HDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  E IK+ + I  L+  +KS +KI     I+ I+L      +++    +P      
Sbjct: 120 KKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K +  I +F   + VLD+ +  H +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEIFYKAVTSIGIFFLIVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ IPI     LA  L  +      IP   Y+A+ +++  I   
Sbjct: 300 EKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSL 344


>gi|15618242|ref|NP_224527.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15835857|ref|NP_300381.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752716|ref|NP_444983.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33241667|ref|NP_876608.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4376600|gb|AAD18471.1| Yop proteins translocation protein U [Chlamydophila pneumoniae
           CWL029]
 gi|6672052|dbj|BAA88663.1| Yop translocation protein U [Chlamydophila pneumoniae]
 gi|7189359|gb|AAF38277.1| type III secretion inner membrane protein SctU [Chlamydophila
           pneumoniae AR39]
 gi|8978696|dbj|BAA98532.1| Yop translocation protein U [Chlamydophila pneumoniae J138]
 gi|33236176|gb|AAP98265.1| YopU [Chlamydophila pneumoniae TW-183]
          Length = 360

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 150/345 (43%), Gaps = 2/345 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + K++ DA  +G    S++     + +  +       +     +   L  +L+
Sbjct: 2   GEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFKHLGGFLVSMLS 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
            A  R   D    +F L +  +      +P L    + G+    +   P  +    KP  
Sbjct: 62  QAPTR--HDPVITLFYLKNCLMLILTASLPLLGAVAVVGVIVGFLIVGPTFSTEVFKPDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  E IK+ + I  L+  +KS +KI     I+ I+L      +++    +P      
Sbjct: 120 KKFNPIENIKQKFKIKTLIELIKSILKIFGAALILYITLKSKVSLIIETAGVSPIITAQI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                 K +  I +F   + +LD+ +  H +  +LKM K E+K E K + GNP IK R++
Sbjct: 180 FKEIFYKAVTSIGIFFLIVAILDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRR 239

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            IA+             A+ +++NP   A+A+ Y+  +  AP ++A G NL AK++   A
Sbjct: 240 QIAQEIAYEDSSSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEA 299

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++ IPI     LA  L  +      IP   Y+A+ +++  I   
Sbjct: 300 EKYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSL 344


>gi|76574808|gb|ABA47282.1| HrcU [Pseudomonas cichorii]
          Length = 361

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 157/342 (45%), Gaps = 9/342 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A +  +L     G+  +   + + +  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDIPKLFIFAALIEMILAMVDSGMERLKELMVLPIME 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +      + +  ++T   L     ++P L +  +  +    +Q  P+     +K  F+
Sbjct: 63  LDRPF---GAALGEVMTKAGLELLLFMLPVLGVAAIMRLAGGWVQFGPLFATEALKLDFE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     ++++S   L N   S  K +++  ++   L  +   ++     +  S     
Sbjct: 120 RLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R++  + L  +  L ++D     + +    +MS ++I+ E K+S G+P +K+ +KS
Sbjct: 180 VDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRKS 239

Query: 249 IARSRIRHKMMEA-----TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +AR   +     A        A +++ NPTH+A+AL Y   +   P ++ KG++  A+++
Sbjct: 240 LAREISQQPGSAAPAKAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADAREL 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            + A +  +P+     LAR+L+++  +   IP    +AVAQ+
Sbjct: 300 IERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340


>gi|328948397|ref|YP_004365734.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM
           2489]
 gi|328448721|gb|AEB14437.1| flagellar biosynthetic protein FlhB [Treponema succinifaciens DSM
           2489]
          Length = 365

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 9/349 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + KTE  S +K+  A  EG    S+E +     L  +  L+         +   +   
Sbjct: 9   EDEGKTEEASEQKLRKARKEGRIAKSQELNGTVVFLFVVAVLILLAPWFYKKICEMMIFY 68

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124
             + T +K++D       L +L      +V+P  L  ++ G+   L+Q    +     ++
Sbjct: 69  FNNVTAQKIDDARFYYIFLRNL----LPIVLPLSLAGILAGVIINLVQNRGFIFTTKTIE 124

Query: 125 PSFKRVSLREG---IKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SAN 180
           P F ++  + G    K ++S+  L N  KS +K+ ++  +  + +  +    L F+ +  
Sbjct: 125 PKFSKIVPKFGEYFKKTLFSMMGLFNIAKSVLKVAIIVAVAVLLIRLDLAKTLGFLKAGG 184

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      V ++L++  + +  + V D      ++  ++KM+KQE+K+E K+S G+P
Sbjct: 185 IDLALRSVSGMVAQLLVVSAVILIVIGVFDYVMQRREFKEQMKMTKQEVKEEFKESEGDP 244

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R +S  +  +   M +A   + ++ITNPTHYA++L++ Q + DAP++ AKG +  A
Sbjct: 245 EVKGRLESAQKEMLSQNMPKAVRESDVVITNPTHYAVSLQWKQEQQDAPMITAKGTDNTA 304

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           + M+KIA E+++PI E   LAR L+    +   IP  + +A+A +  ++
Sbjct: 305 QTMKKIAAENDVPIIENRPLARGLYADTEVGDIIPTSYLRAIAAVYAQV 353


>gi|269138239|ref|YP_003294939.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
 gi|61743012|gb|AAX55232.1| EsaU [Edwardsiella tarda]
 gi|267983899|gb|ACY83728.1| type III secretion apparatus protein [Edwardsiella tarda EIB202]
 gi|304558282|gb|ADM40946.1| EsaU [Edwardsiella tarda FL6-60]
          Length = 352

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 152/338 (44%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++K++ DA  EG    S++ S    +   L++++        ++   +   LA+
Sbjct: 3   EKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATLAT 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L     I  L    +    R V     L  +  I + L++   +     + PS +
Sbjct: 63  L---NLPLPDAIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K++ S+  L    K  +KI+++G   T  +     +    + A+  + L+  
Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLWVT 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                 +  ++LL  A   V+D    Y     +L MS ++IK E K + G+P IK R++ 
Sbjct: 180 SKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R      + ++ S A++++ NPTH A+ LRY + E   P +V  G+   A+ +  +A 
Sbjct: 240 LHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
              IP+ E   LAR+L         +P   + AVAQL+
Sbjct: 300 ARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337


>gi|83747856|ref|ZP_00944889.1| HrcU [Ralstonia solanacearum UW551]
 gi|207739220|ref|YP_002257613.1| hrp protein hrcu [Ralstonia solanacearum IPO1609]
 gi|83725503|gb|EAP72648.1| HrcU [Ralstonia solanacearum UW551]
 gi|206592593|emb|CAQ59499.1| hrp conserved protein hrcu [Ralstonia solanacearum IPO1609]
          Length = 354

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 157/347 (45%), Gaps = 10/347 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF---FFSPGIYSVTSDLH 63
            D KTE P+ KK+EDA  +G    S + +    +L+  + L     FF     ++     
Sbjct: 2   SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFGDRWRALLD--- 58

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
             LA         +  +   L H++L    + +P   +F +    +   Q   VL+   V
Sbjct: 59  --LALDVDSSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPV 116

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +     ++   G+KRI+S++++++ +K  +K   V   +   +      ++     +   
Sbjct: 117 ELKMNAINPASGLKRIFSMSSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMD 176

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I       + ++L         L   D G     +    +MSK E+K E K S G+P IK
Sbjct: 177 IAEIGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIK 236

Query: 244 NRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
             +K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  
Sbjct: 237 GERKKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALA 296

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +R+ A    IPI   P LAR+L++ V +  A+P   ++ VA+++  +
Sbjct: 297 LREEATALGIPIVGNPPLARALYR-VDLYGAVPEALFETVAEVLAWV 342


>gi|15645389|ref|NP_207563.1| flagellar biosynthesis protein FlhB [Helicobacter pylori 26695]
 gi|3023763|sp|P56416|FLHB_HELPY RecName: Full=Flagellar biosynthetic protein flhB
 gi|2313898|gb|AAD07819.1| flagellar biosynthetic protein (flhB) [Helicobacter pylori 26695]
          Length = 358

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKNKALWLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346


>gi|15723910|gb|AAL06357.1|AF311901_9 EscU [Citrobacter rodentium]
          Length = 345

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D   +G+   S E       L    +   + +     V   ++  + S
Sbjct: 3   EKTEKPTPKKIRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFIEVAGVVNTTINS 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  I  I   L  +       V+P +L   +  + + + Q   +  +  +KPS +
Sbjct: 63  LNEPFLYSIHEI---LGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKIKPSAQ 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++S++  +K I+S+ ++   +KS  K++++  I            ++F   N +  L   
Sbjct: 120 KISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQTLVII 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
            F +  +   +L      +V D  +  H+   K+KMSK E++ E K + GNP IK  ++ 
Sbjct: 180 AFFIFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVEREAKDTDGNPEIKGERRR 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +        +     ++T+I+ NPTH A+ L Y   E   P+++   ++  A ++ K+A 
Sbjct: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAKALQIIKLAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            +NIP+ E+  LARSL+K +     I   F++ VAQLI
Sbjct: 300 LYNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLI 337


>gi|167770199|ref|ZP_02442252.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM
           17241]
 gi|167667521|gb|EDS11651.1| hypothetical protein ANACOL_01542 [Anaerotruncus colihominis DSM
           17241]
          Length = 291

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 150/277 (54%)

Query: 77  ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           +  I        +      +P LL+  +  +   + Q   +  +    P F R++  +GI
Sbjct: 10  MQEIRIYFMQGCIFFVLSALPLLLICGLVVVICTVAQTRGLFTMKAAAPKFGRMNPLQGI 69

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
           K+++S+  +V  +KS VKII++G II  SL E +F M   +  +    L      +  + 
Sbjct: 70  KKMFSLRGVVELLKSIVKIIILGYIIYNSLGEQFFFMPRLMDMSLEQALAFTGNIILDIA 129

Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256
               + +  +   D  + +  +   L+MSKQE+K+E KQ+ G+P +K + K   + + R 
Sbjct: 130 KTAAIVMVFVAGFDYLYQWWDFEKNLRMSKQELKEEFKQTEGDPQVKGKIKERQQQQARQ 189

Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316
           +MM+    A ++I NPTHYA+A++Y   +N+APV++AKG + +A ++ K+A EH+I   E
Sbjct: 190 RMMQNVPNADVVIRNPTHYAVAIQYNPHQNNAPVVIAKGMDSLALRIVKVAQEHDIITME 249

Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
              LAR L++ V ++  IP  FY+ VA+++  +Y+ K
Sbjct: 250 NKPLARGLYETVDLDREIPEQFYQPVAEVLAFVYNLK 286


>gi|183221908|ref|YP_001839904.1| flagellar biosynthetic protein FlhB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167780330|gb|ABZ98628.1| Flagellar biosynthetic protein FlhB; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 403

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 177/352 (50%), Gaps = 5/352 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + +TE PS ++  +   +GN P S E +    +L     L       I +    +   
Sbjct: 51  ADEGRTEPPSERRRREEKEKGNVPKSNEVASTMVLLGGTGVLFLLGDTFIKNTAIFIKKY 110

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L      +         +L+ +S     L+ P L + ++F I   ++Q   + +   +  
Sbjct: 111 LPMGMHHERFGAEEFRVILSGVSKDFFNLLWPVLAITLVFAIVGNVVQVGFMFSPRALSF 170

Query: 126 SFKRVSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
            F R+S     KR + +   L N +KS  K++L+G I  I ++ ++  +L   +      
Sbjct: 171 RFDRISP--NFKRVLPNRQTLFNLVKSLAKVVLIGVISYILISGDFLKVLLTGNMGMMQA 228

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +    ++  K+++   L +  + V D  +   ++   LK +  E K E+K+  G+P++KN
Sbjct: 229 ITLVTYSGFKIMMAAGLLLLGIAVADFFFQKSEFEESLKQTPSEAKREMKEDSGDPVMKN 288

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R+  +AR  ++  M+    +A ++ITNPTHY++AL Y    + AP ++AKG+N +A ++R
Sbjct: 289 RRMQLARDMMQGNMLREVPKADVVITNPTHYSVALSYEMGRDSAPRVIAKGENRLALEIR 348

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI--YHKKI 354
           +IA E+++PI E P  AR L+ QV +   IP  F++AV Q++  +  + KK+
Sbjct: 349 RIARENDVPIVESPKQARLLYAQVEVGDEIPQEFFQAVVQILITLEKFKKKV 400


>gi|315452646|ref|YP_004072916.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179]
 gi|315131698|emb|CBY82326.1| flagellar biosynthetic protein flhB [Helicobacter felis ATCC 49179]
          Length = 352

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 172/351 (49%), Gaps = 7/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKIE A  EGN   S E   F  ++A    ++ FFS  +    S
Sbjct: 1   MAE----EEKTELPSAKKIEKAREEGNVAKSLEVVGFLGLVAGFGGVMAFFSMWLDHFES 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L            ++  L   L    + +++P L L  +    + ++Q   + + 
Sbjct: 57  IFRQSLRWIALD--FTPHNLHLLSLQLLKDVAWVLLPFLFLMFVVAFLANVVQFGLLFSP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P F +++   G+K ++S+  L++ +    K+ +   +  + ++     +       
Sbjct: 115 KAIVPKFSKINPINGLKNLFSLKKLLDGLLITAKVCIAFVLGFVVVSLFIGELAKIARVE 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                         ++  +L      ++LD      Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 IRDQALWFEHKALILIASLLFLFLVASLLDFLLKRRQYINSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + K +       KMM A   A +++TNPTHYA+ALR+   ++ APV+VAKG   +A
Sbjct: 235 EIKAKIKQLMLKNSMSKMMAAIPSANVVVTNPTHYAVALRFE-EKDVAPVVVAKGIEHLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++ IA EH I I E P LAR L+K+V ++  IP + ++AVA +  ++ H
Sbjct: 294 IRIKAIAREHEIEIIENPKLARELYKEVDVDEVIPKMLFEAVAIVFAQVAH 344


>gi|255022047|ref|ZP_05294053.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
 gi|254968533|gb|EET26089.1| Flagellar biosynthesis protein FlhB [Acidithiobacillus caldus ATCC
           51756]
          Length = 380

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 8/352 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    + KTE  S K+++DA  +G  P S++ +    + A    L          + S
Sbjct: 1   MSE---AEEKTEKASQKRLDDAKKDGKVPRSQDWTASLVLFAATALLWAASGSWGTEILS 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            + V L+ ++     D    +      +     + +    + ++  I S L+    V + 
Sbjct: 58  RMVVGLSVSSLHFRADWQRTIL---QEAAPLFVVFLMFGGVILVSAIASILLVGGWVWSP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +   + R+S   G+KR ++        +  VK  L+G  + + +          +   
Sbjct: 115 GKL-WEWDRLSWTSGLKRPFTKKGFSVLWEDSVKTGLLGVCMGLIVWGQKGVWFALLDIP 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   +      + K   +    +     +D       +    KMSKQ+IKDE K+  GNP
Sbjct: 174 PRRAISLGAAILVKDFFIFASLLLVPGAIDWFLQRRFFLESQKMSKQDIKDEHKEVDGNP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+R + + R   R +MM++  +A++++ NP HYA+ALRY       P++ AKG + IA
Sbjct: 234 LIKSRIRRLQRRIARMRMMKSVEKASVVLINPEHYAVALRYT-ESMTVPIVTAKGIDTIA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            K+R+IA  H +PI E PS+ARSL+K   I   IP   Y+AVA ++  I H 
Sbjct: 293 LKIREIAKIHGVPILEAPSMARSLYKVCDIGDLIPAGLYEAVAIVLAYIDHL 344


>gi|14719875|gb|AAK73239.1| SctU [Burkholderia pseudomallei]
          Length = 351

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 165/343 (48%), Gaps = 4/343 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + S   S+ A ++ L+        ++ + ++  L
Sbjct: 2   SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A  +      +  +   L      A   V+P L +  + GIG  ++Q    ++L  V P+
Sbjct: 62  AFVSAD--HSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K ++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +  
Sbjct: 120 LGALNPAEGLK-LFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSR 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + K L+++      +   D+      +  K+KM+K E+K E K   G+P++K  +
Sbjct: 179 IFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGER 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ 
Sbjct: 239 KRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRA 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 299 AQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 340


>gi|55981991|gb|AAV69421.1| EsaU [Edwardsiella tarda]
          Length = 352

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 3/338 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++K++ DA  EG    S++ S    +   L++++        ++   +   LA+
Sbjct: 3   EKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATLAT 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L     I  L    +    R V     L  +  I + L++   +     + PS +
Sbjct: 63  L---NLPLPDAIALLTGKAAALVVRFVFSLAALLAVTLILTGLVETGFLFAPKAIMPSAE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K++ S+  L    K  +KI+++G   T  +     +    + A+  + L+  
Sbjct: 120 RINPLNNAKQMVSLLKLFELGKMVLKIVILGPTFTYFIRGYAASFAQLVRADAEAGLWVT 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                 +  ++LL  A   ++D    Y     +L MS ++IK E K + G+P IK R++ 
Sbjct: 180 SKMALWMWGILLLLTALFAIVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE 239

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R      + ++ S A++++ NPTH A+ LRY + E   P +V  G+   A+ +  +A 
Sbjct: 240 LHREIQSGSLADSVSSASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE 299

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
              IP+ E   LAR+L         +P   + AVAQL+
Sbjct: 300 ARRIPVVENIPLARALIATTRPGDYVPEALFVAVAQLL 337


>gi|291519578|emb|CBK74799.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio
           fibrisolvens 16/4]
          Length = 239

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/234 (33%), Positives = 133/234 (56%)

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           +  ++P   + +   G KRI+S +++VN + +  KI LV  I  +S+      +      
Sbjct: 1   MKPLQPKLSKFNPINGFKRIFSKDSIVNLLMALAKIALVCYISYVSIRNQANNIFILYDI 60

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
              S L   F  +  V I I +    L  +D  +   ++ + +KM+KQE+KDE K + G+
Sbjct: 61  GLKSALSLIFTLICDVGIKISIVYIILGFIDYAYQKWKFTNDMKMTKQEVKDEYKNTEGD 120

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK RQK       R +MM+   +A ++ITNPTH A+A+ Y  T+++AP ++AKG++ +
Sbjct: 121 PQIKGRQKQKMMESSRRRMMQNVPQADVVITNPTHIAVAILYDNTKDEAPRVIAKGEDYL 180

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+++ A +  +PI E   LAR+L+  V I+  IPP  Y+AVA+++  +Y +K
Sbjct: 181 ALKIKEAAKDSGVPIVENKPLARALYATVEIDEIIPPELYQAVAEILAVVYTQK 234


>gi|296531764|ref|ZP_06894586.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
 gi|296267903|gb|EFH13708.1| flagellar biosynthetic protein FlhB [Roseomonas cervicalis ATCC
           49957]
          Length = 370

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 1/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +    KT   S +K++ A   G+ P+SRE S F      L+ L           ++
Sbjct: 1   MAE-ETGQEKTLDASPRKLQQARERGDLPMSREGSSFGLYFITLLLLWLAGGLIGQRFSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  LL           +        +  + + +++P   L +   +  +L+Q   VL  
Sbjct: 60  VLLPLLEQPEAFLELTEAGHRRAALAVVEALALVLLPVFALLLAGSLLPHLLQNNVVLAP 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P    +S+  G +R++ +  L  F K   K   V     +             + +
Sbjct: 120 QRLEPKLSHLSIISGFRRLFGLKGLFEFAKGLTKAGAVAGACWLVAAPLLEGSPQLAALD 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +        +  +L+ I L  A + +LDI +   ++  + +M+ QE+++E++ + G+P
Sbjct: 180 AAAFGPLVLRALAGMLLAITLVAAGVAILDISFQRFEYARRQRMTHQEMREEMRATDGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   K   +   + +M+     AT+++TNPTHYA+ALRY +  + APV VAKG + +A
Sbjct: 240 HVKAALKKKRKQLSQRRMLADVPGATVVVTNPTHYAVALRYERGRDVAPVCVAKGVDRMA 299

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R +A    + + E+ +LAR+L   V +   IPP  ++AVA++I  ++ ++
Sbjct: 300 LRIRDLARGAGVAVMEDRALARALHASVEVGQVIPPAHFEAVAKIIGIVWAQQ 352


>gi|254461227|ref|ZP_05074643.1| flagellar protein FlhB [Rhodobacterales bacterium HTCC2083]
 gi|206677816|gb|EDZ42303.1| flagellar protein FlhB [Rhodobacteraceae bacterium HTCC2083]
          Length = 383

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 172/360 (47%), Gaps = 12/360 (3%)

Query: 1   MSEN-DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E       KTE P+ K+++ A  +G  P S+E  +F+++   ++ +     P + S+ 
Sbjct: 1   MAEGGSDGQEKTEEPTQKRLDKAKEDGQVPSSKELFVFTTLFIGML-IYVGLVPVLPSLV 59

Query: 60  SDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
            +  +L + + ++ L D    ++      +   +    +P L++ +        +  +  
Sbjct: 60  QEWGMLFSFSGEKGLTDAIFGNLGASFRFMFWKSVVFALPMLVVVIATQAA---MSGLIN 116

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +   +     R++   G+KR+ S+  LV  +K+  K+ L+ +   +       ++L   
Sbjct: 117 WSNGALAFKASRINPLSGLKRMVSMKALVEMLKAIGKVTLLISASVMVFVSQIESLLVSN 176

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           + +    L         ++I+ L  +  + + D+ + ++Q   +LKM+ QE++DE KQ+ 
Sbjct: 177 ATHLTGGLSRMNDVFVLLIIVFLFVLGIMAMADVMYQHYQHNKQLKMTLQEVRDESKQTE 236

Query: 238 GNPIIKNRQKSIA-----RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           G+P +K + + +      R++ R   M+A   AT IITNPTH+A+AL+Y      AP ++
Sbjct: 237 GSPEVKAKIRRMQMTAGSRAKARKAAMDAVPTATAIITNPTHFAVALKYEVGTVGAPTIL 296

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A G+   A+++     +  + IF    LAR+LF    +   IP   + AVA ++  IY  
Sbjct: 297 AMGRGHFAQEIISTGRDAGVTIFRNELLARALFFAGQVGEEIPAPLFSAVAGVLAFIYRL 356


>gi|298736474|ref|YP_003729000.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8]
 gi|298355664|emb|CBI66536.1| flagellar biosynthetic protein FlhB [Helicobacter pylori B8]
          Length = 358

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+      ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILMVVAFLFNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|182440974|dbj|BAG24099.1| HrcU [Pseudomonas cichorii]
          Length = 361

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 155/342 (45%), Gaps = 9/342 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A +  +L     G+  +   + + +  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDIPKLFIFAALIEMILAMVDSGMERLKKLIMLPMME 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +      + +  ++T   L     ++P L +  +  +    +Q  P+     +K  F+
Sbjct: 63  LDRPF---GAALGEVMTKAGLELLLFMLPVLGVAAVMRLAGGWVQFGPLFATEALKLDFE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     ++++S   L N   S  K +++  ++   L  +   ++     +  S     
Sbjct: 120 RLNPINQFQQMFSSRQLFNLFNSLCKAVMITLVLYWLLPPSLGDLIGLAQTDLDSYWKAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R++  + L  +  L ++D     + +    +MS ++I+ E K+S G+P +K+ +KS
Sbjct: 180 VDLFRRLSRICLGLLLVLAIVDFALQKYFFIKGQRMSHEDIRKEYKESEGDPHMKSHRKS 239

Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +A    +              A +++ NPTH+A+AL Y   +   P ++ KG++  A+++
Sbjct: 240 LAHEISQQPASAAPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDADAREL 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            + A +  +P+     LAR+L+++  +   IP    +AVAQ+
Sbjct: 300 IERARKAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340


>gi|323956511|gb|EGB52253.1| flagellar biosynthetic protein FlhB [Escherichia coli H263]
          Length = 263

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 138/231 (59%)

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P F +++   GIKR++S       +K+ +K ILVG++    L  ++  M+  ++ +P 
Sbjct: 1   MQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPI 60

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +
Sbjct: 61  TAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 120

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A +
Sbjct: 121 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALR 180

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 181 IREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 231


>gi|261837998|gb|ACX97764.1| flagellar biosynthesis and export protein [Helicobacter pylori 51]
          Length = 358

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L + ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILTILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|317407764|gb|EFV87691.1| hypothetical protein HMPREF0005_03212 [Achromobacter xylosoxidans
           C54]
          Length = 357

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 171/346 (49%), Gaps = 3/346 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE PS K++ D+  +G+   S++ +    +LA   Y L        ++     ++L
Sbjct: 6   SGEKTEPPSQKRLRDSRKKGDVAYSKDFTQTVLVLALFGYTLGNAGAIFEALGR---IIL 62

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A    +   + I  +L  L      + +P L + +  GI +  +Q   VL    + PS
Sbjct: 63  TPANFTSIPFGAAINTVLDILLQELIAISLPYLGIVIGIGIFADAMQVGLVLAFQKLLPS 122

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K++++   +K I+S  NLV F+KS  KI+ +  ++T  + +    ++    +    +  
Sbjct: 123 AKKINIMANLKNIFSKKNLVEFLKSTAKIVFLSVLVTQVIKDAMPELMKIPHSGLVGMGA 182

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +R +++ I +    ++V D+GW   Q+   L MSK+E+K E K+  G+P IK+ +
Sbjct: 183 AMGSMMRTLVVNIAVAYFVISVADLGWQRMQYRKGLMMSKEEVKQEYKEMEGDPHIKHAR 242

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K + +    +  ++ T +A++++TNPTH A+AL Y + +   PV++AKG+  +A  M K 
Sbjct: 243 KHLHQEMAMNDTVQNTRKASVVVTNPTHLAIALFYEEDKVPLPVVLAKGEGALAAAMVKA 302

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A E  IP+ +   LAR+L     ++  IP       A+L+  +   
Sbjct: 303 AREEGIPVMQNIPLARALMVHGSVDQYIPAELVVPTAELLRLLRQL 348


>gi|146305090|ref|YP_001185555.1| YscU/HrpY family type III secretion protein [Pseudomonas mendocina
           ymp]
 gi|145573291|gb|ABP82823.1| type III secretion protein, YscU/HrpY family [Pseudomonas mendocina
           ymp]
          Length = 359

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 152/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++ S    +L          +  +  +   + + + +
Sbjct: 3   EKTEKATPKQLRDAREKGQIAQSQDVSKLLILLMVSEITWSLATESVQRLQHLMALAINA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q  L  +     L+          +I  + + M+  +     Q   +     +K  F 
Sbjct: 63  TGQPFLRIVGQ---LVDEAVTVLLGFLIFSVGVAMVMRLAGGWAQFGFLFAPKALKIDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++    +K+++S  NL N + S +K  ++G  + + L     T++   +++  +     
Sbjct: 120 KLNPFPQLKQMFSAQNLTNLLMSILKAAVIGITLYVLLWPELGTLILLANSDLDTYWQSL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L   L  +  L  +D G   +    KL+MSK ++K E KQS G+P++K +++ 
Sbjct: 180 MEVFRYILRCTLGLLLVLAAVDFGLQKYFHAKKLRMSKDDVKKEYKQSEGDPMVKGQRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A   +      A      A +++ NPTHYA+AL Y   +   P++  KG++  A  +  
Sbjct: 240 LAHELLNQPPSTAARPVEEADMLVVNPTHYAVALYYRPGKTPLPMIHCKGEDEDALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   LAR+L+K V     IP    +AVA +   +   
Sbjct: 300 RAKKARIPVVQSVWLARTLYK-VNAGRHIPRPTLEAVAHIYQLVKQL 345


>gi|300693811|ref|YP_003749784.1| hypersensitivity response secretion protein hrcu, type III
           secretion exporter [Ralstonia solanacearum PSI07]
 gi|299075848|emb|CBJ35157.1| Hypersensitivity response secretion protein hrcU, Type III
           secretion exporter [Ralstonia solanacearum PSI07]
          Length = 357

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+EDA  +G    S + +  + +L+  + L    S       + L + L
Sbjct: 2   SDEKTEQPTDKKLEDAHKDGETAKSADLTAAAVLLSGCLLLALTASFFGERWRALLDLAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              + R    +  +   ++H +L    + +P   +F +    +   Q   VL+   V+  
Sbjct: 62  DVDSSR--HPVMTLKQTISHFALQLVLMTLPVGFVFALIAWIATWAQTGIVLSFKPVELK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++   G+KRI+S+ ++++ +K  +K   V   I   +      ++     +   I  
Sbjct: 120 MSAINPASGLKRIFSLRSMIDLVKMVIKAAAVAAAIWKLILILMPAIVGAAYQSVLDIAE 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + ++L         L   D G     +    +MSK E+K E K S G+P IK  +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239

Query: 247 KSIARSRI-RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K +AR      K  ++ + A  ++ NPTHYA+A+RY+  E   P ++AKG +  A  +R+
Sbjct: 240 KKLARELAEDAKPKQSVAGAQAVVVNPTHYAVAIRYVPEEYGLPRIIAKGVDDEALALRE 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A    IPI   P LAR+L++ V +   +P   ++ VA+++  +
Sbjct: 300 EATALGIPIVGNPPLARALYR-VDLYGPVPEPLFETVAEVLAWV 342


>gi|94496754|ref|ZP_01303329.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58]
 gi|94423767|gb|EAT08793.1| yscU; putative type III secretion protein [Sphingomonas sp. SKA58]
          Length = 375

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 86/360 (23%), Positives = 170/360 (47%), Gaps = 14/360 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +   +KTE P+ K++ DA  +G+   S++      ++   + LLF        +T 
Sbjct: 1   MAQKNDGGDKTEKPTPKRLRDARRKGDIAKSKDVGPALGMIMWFLLLLFAAGHAGAQITG 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L +AT    +  + +  L     L    + +  L    + G+ +  +Q   ++  
Sbjct: 61  LMRDTLGTATSMPFDAAAPV--LGWAALLVLVSVSLLILGPAALIGVIAEFVQVGALVTT 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KPS  +++  EG+KR++S++NLV  +K+  K  L+ TI  + L  +    +  + A 
Sbjct: 119 EKLKPSLDKLNPIEGLKRMFSMDNLVELLKTVAKATLILTIAGVILWRSADGFVSLVQAA 178

Query: 181 PHSILYHAFFTVRKVLIMIL------------LFIATLTVLDIGWSYHQWYSKLKMSKQE 228
             S + H    V   ++ ++                 +   D  W+ H +  KL+MS+++
Sbjct: 179 GWSPVDHHGDQVASAMLALIRSVSIQLFAWTCAIFLLVAAADRAWAQHSFIKKLRMSRRD 238

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           IK E K + G+P+++ +++ +         + A  RA +++TNPTH A+AL Y   +   
Sbjct: 239 IKQEHKDNEGDPMLRAQRRQLHEEWANQNAVAAAGRANVLLTNPTHLAIALDYDPEDCPV 298

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P++ AKG+  +A  MR  A    +PI     LAR ++ +  +   IP   + A+A++I  
Sbjct: 299 PMVAAKGEGPLAAAMRAEAEREGVPIVRNIGLARGVWGESEVGGPIPRDRFDAIAEIILW 358


>gi|167615475|ref|ZP_02384110.1| type III secretion system protein [Burkholderia thailandensis Bt4]
          Length = 360

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 169/350 (48%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      KTE P+ +K++ A  +G    S++ +  +++ A +  L    +     ++ 
Sbjct: 1   MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L      +       +  L  L+ SA   ++P +   ++ G+ S   Q   ++ L
Sbjct: 56  AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  +S   GIKRI+S+ +L+  +K  VK I++  +I   +T  +  ++  +   
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASVYEA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +    +  + K+  ++ L +A     D   S   +    +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             K  ++ +AR         +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  
Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +R+ A+   +PI   PS+AR+L++ V  ++AIP   ++ VA ++  +
Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342


>gi|119953071|ref|YP_945280.1| flagellar biosynthesis protein FlhB [Borrelia turicatae 91E135]
 gi|119861842|gb|AAX17610.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135]
          Length = 373

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/349 (23%), Positives = 161/349 (46%), Gaps = 6/349 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
              + +TE P+ +K + A  EG    S E ++  ++        F  S   Y +      
Sbjct: 21  SEDEGRTELPTEQKKQKAREEGQVLKSTEINMAVTLCILFAVFFFMLSYFAYELMDVFRW 80

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
                 +     I  + F       S    VI  LL+  +      ++Q   ++    + 
Sbjct: 81  QAGKLPEIMSISIYSLGFAYIR---SMLGYVIVFLLISFIVVFLINVVQVGFLITFKPIV 137

Query: 125 PSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P + RV+    + IK  + S +   N  KS  KI ++  I  I L  N   +      + 
Sbjct: 138 PKWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISFIYYIMLRSNIGKISRMFEYSL 197

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +        ++    ++ +  +++LD  +   ++   LKM+K+E+K E K+  G+P+
Sbjct: 198 EDGISVILSLAYRICFFSVIVLMGISILDYLFQRTRYIENLKMTKEEVKQERKEMEGDPL 257

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +++R +   R  +   +     +A ++ITNP H+A+A+++      AP ++AKGQ+ IA 
Sbjct: 258 LRSRMRERMREILNANLKVTVPQADVVITNPEHFAVAIKWDSNTMLAPRVLAKGQDEIAF 317

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
            +++IA E+NIP+ E   LAR L+  V +N  IP  +++ V++++ K+Y
Sbjct: 318 VIKQIARENNIPVMENKPLARDLYANVDVNEEIPREYWEIVSKILVKVY 366


>gi|294828141|ref|NP_712789.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293385988|gb|AAN49807.2| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 646

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 164/345 (47%), Gaps = 2/345 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE  S ++  +   +GN P S E      +LA +I +              L   
Sbjct: 296 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKY 355

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +     R       +  LL + S     L+ P L + ++  I   + Q   +     +  
Sbjct: 356 IHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSF 415

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F R+      K + +   L N  KS  K+ L+  +  I +++++F +L          +
Sbjct: 416 NFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAV 474

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                +  K+ +++ + +  ++++D  +  +++   LKM+  E K E K+S G+  ++ R
Sbjct: 475 ALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 534

Query: 246 QKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           ++ +AR  +  + M+     A ++ITNPTH+A+AL Y    + AP+++AKG +  A  + 
Sbjct: 535 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLII 594

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +IA E+ +P  E+   AR L+++V + + +P  FY+A+A ++ ++
Sbjct: 595 RIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 639


>gi|89056679|ref|YP_512130.1| flagellar biosynthesis protein FlhB [Jannaschia sp. CCS1]
 gi|88866228|gb|ABD57105.1| flagellar biosynthetic protein FlhB [Jannaschia sp. CCS1]
          Length = 362

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 166/355 (46%), Gaps = 12/355 (3%)

Query: 1   MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           MS++D +P +K    + KK+EDA  +G    S++ +        L+         + ++ 
Sbjct: 1   MSDDDTSPGDKPFDATPKKLEDARKKGEIVRSQDLNTAVMYAGFLLSGAILAPWLVQNLG 60

Query: 60  SDLHVLLASATQRKL------EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
                 L  A            D   I  L   L  SA+ +++P  LL +     S L Q
Sbjct: 61  QLTQTTLGQAEVIAPLMLGPGGDGPAIGLLSGSLIASAAIVLVPAGLLLI-----SLLAQ 115

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
           R  +   + + P   R+S     K+ Y    L  F KS VK+ LV   + I L     T+
Sbjct: 116 RALLFTPSKLMPKLNRLSPISNAKQKYGSQGLFQFAKSAVKLALVSIFLAIYLWARAETI 175

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
           L  +      +L          L+++      + ++D  W + Q   + +M++QE+ DE 
Sbjct: 176 LASLYGTAGQLLELLGRLSLDFLMVVAGMTGIIGIIDWFWEWSQLQLRNRMTRQEVMDES 235

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K + G+P IK ++++  +    ++M+     A +++ NPTHYA+AL++ +     P+ VA
Sbjct: 236 KSAEGDPHIKQQRRARGQGIAMNQMLGDVPNADVVVVNPTHYAVALKWDRAGGGVPICVA 295

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           KG + +A+++R+ A E  +PIF +P  AR+L   + + +AI P  Y+AVA  I  
Sbjct: 296 KGVDDVARRIREAASEAAVPIFSDPPTARALHASIEVGAAIQPDQYRAVAAAIRF 350


>gi|45657253|ref|YP_001339.1| flagellar biosynthesis protein FlhB [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600491|gb|AAS69976.1| flagellar protein [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 649

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 164/345 (47%), Gaps = 2/345 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE  S ++  +   +GN P S E      +LA +I +              L   
Sbjct: 299 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKY 358

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +     R       +  LL + S     L+ P L + ++  I   + Q   +     +  
Sbjct: 359 IHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSF 418

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F R+      K + +   L N  KS  K+ L+  +  I +++++F +L          +
Sbjct: 419 NFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAV 477

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                +  K+ +++ + +  ++++D  +  +++   LKM+  E K E K+S G+  ++ R
Sbjct: 478 ALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 537

Query: 246 QKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           ++ +AR  +  + M+     A ++ITNPTH+A+AL Y    + AP+++AKG +  A  + 
Sbjct: 538 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLII 597

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +IA E+ +P  E+   AR L+++V + + +P  FY+A+A ++ ++
Sbjct: 598 RIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRL 642


>gi|242280058|ref|YP_002992187.1| flagellar biosynthesis protein FlhB [Desulfovibrio salexigens DSM
           2638]
 gi|242122952|gb|ACS80648.1| type III secretion exporter [Desulfovibrio salexigens DSM 2638]
          Length = 353

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 174/353 (49%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS++ +   KTE  + K+I+ A  +G+     E     +++A +I L             
Sbjct: 1   MSKDPS---KTEKATPKRIDKARKDGSVAKGEEMGKIMTLIAGVICLRAIMDMYYEQFYE 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                        L D   +  L    S   + +++P  L           +Q   +   
Sbjct: 58  IFQWFFTKGIFIDL-DKQSVYQLFQWCSQKLALILLPLFLFIAFIAFLVLRLQVGKLWTT 116

Query: 121 NHVKPSFKRV-SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
              KP F ++ +L +G KR I+++  ++  +KS +  I+VG    I +       L    
Sbjct: 117 KVFKPKFSKMFNLVQGFKRLIFNVKTIIRLVKSLLFAIIVGIAPYIIIKNEVGNFLPLFY 176

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
           ++ H +  +      K++   +L +  L + D+ +  + +  ++KM+K E+KDE KQ+ G
Sbjct: 177 SSAHELAIYMLQIGYKMVTYTMLPMLVLALADLWYQRYNYQEEMKMTKDEVKDERKQAEG 236

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK +QK    + ++ +MM     A ++ITNPTHYA+AL+Y      AP+++AKG N 
Sbjct: 237 DPKIKQQQKQKMMAILQQRMMAEVPNADVVITNPTHYAIALKYDPMVAPAPLVLAKGMNK 296

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +A++++++A E+ +PI E   LA++L+KQV I   IP   YKAVA ++ K+  
Sbjct: 297 VAERIKEVARENKVPIRENKPLAQALYKQVEIGDIIPEELYKAVAAILAKLNK 349


>gi|167577327|ref|ZP_02370201.1| type III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 360

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 168/350 (48%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      KTE P+ +K++ A  +G    S++ +  +++ A +  L    +     ++ 
Sbjct: 1   MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L      +       +  L  L+ SA   ++P +   ++ G+ S   Q   ++ L
Sbjct: 56  AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  +S   GIKRI+S+ +L+  +K  VK I++  +I   +T  +  ++      
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSMKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASAYEA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +    +  + K+  ++ L +A     D   S   +    +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             K  ++ +AR         +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  
Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +R+ A+   +PI   PS+AR+L++ V  ++AIP   ++ VA ++  +
Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342


>gi|83717264|ref|YP_438947.1| type III secretion system protein HrcU [Burkholderia thailandensis
           E264]
 gi|257142051|ref|ZP_05590313.1| type III secretion system protein HrcU [Burkholderia thailandensis
           E264]
 gi|83651089|gb|ABC35153.1| type III secretion inner membrane protein [Burkholderia
           thailandensis E264]
          Length = 360

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 168/350 (48%), Gaps = 9/350 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E      KTE P+ +K++ A  +G    S++ +  +++ A +  L    +     ++ 
Sbjct: 1   MAE-----EKTEEPTERKLKKAREKGQVAKSKDVADAATLAAAIGVLTAGEAMLTGGLSR 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L      +       +  L  L+ SA   ++P +   ++ G+ S   Q   ++ L
Sbjct: 56  AIRTALDFVHGER--TPQATLAALHDLAASAGLTMLPFVAAAIVAGVASQAPQAGFMITL 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             V P F  +S   GIKRI+S  +L+  +K  VK I++  +I   +T  +  ++  +   
Sbjct: 114 EPVMPKFDAISPMAGIKRIFSTKSLLELVKMIVKAIVLTCVIWKMMTSLFPLVVASVYEA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +    +  + K+  ++ L +A     D   S   +    +M+K+E K E K+S G+P
Sbjct: 174 TPQLSRVLWTVLMKLFGVVALVVAVFAAADYKISRAMFIRDNRMTKEETKREHKESEGDP 233

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
             K  ++ +AR         +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  
Sbjct: 234 HTKGERRRLAREIATSAPPRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDG 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A  +R+ A+   +PI   PS+AR+L++ V  ++AIP   ++ VA ++  +
Sbjct: 294 ALALRRHAHALGVPIVGNPSVARALYR-VERDAAIPEELFETVAAILRWV 342


>gi|58426834|gb|AAW75871.1| flagellar biosynthetic protein FlhB [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 333

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 153/309 (49%)

Query: 45  IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104
           ++ L   + GI    +       S      E+   +      L L    +++P + + + 
Sbjct: 1   MFALMALARGIGDGATAWMKTALSPDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLA 60

Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
            G+   L+      +   + P   +++   G+KR++  N+L   +KS ++++ VG   + 
Sbjct: 61  AGLAGPLLMSGLHFSGKAIMPDLTKLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASF 120

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
            ++++   +   +S      + +     + +L      +  L  +D  +    W  KLKM
Sbjct: 121 CISKSLPGLRSLVSQPLEQAVGNGLDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKM 180

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +++EIK E+K+S G+P +K R + +     + +MMEA  +A +++ NPTHYA+AL+Y   
Sbjct: 181 TREEIKREMKESEGSPEVKGRIRQMQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGG 240

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           +  AP++VAKG + +A ++R+   +H + I   P LAR+L+++  +   IP   Y  VAQ
Sbjct: 241 KMRAPIVVAKGVDEMAFRIREAGEQHRVAIVTAPPLARALYREAQVGKEIPVRLYSVVAQ 300

Query: 345 LIYKIYHKK 353
           ++  +Y  +
Sbjct: 301 VLSYVYQLR 309


>gi|308062091|gb|ADO03979.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Cuz20]
          Length = 358

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA LI +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLISIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                +   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHAVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFILAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|256833222|ref|YP_003161949.1| type III secretion exporter [Jonesia denitrificans DSM 20603]
 gi|256686753|gb|ACV09646.1| type III secretion exporter [Jonesia denitrificans DSM 20603]
          Length = 380

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 179/353 (50%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ D    +TE  + K+++D   +G+   S++ S ++ I A    L F F      +  
Sbjct: 1   MSD-DQSQERTEEATPKRMKDVRKDGSLQKSQDLSAWAGIGAGTAVLPFVFGNVEKHIED 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  +   +T     D   +V +L          + P L +  +  I +  +     +  
Sbjct: 60  VLMNI---STIASTPDPLLVVPMLGDALAGILPALAPLLAVVFIAAILANGV-GGYYIAT 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+FK+ +L +G+K+ + +  L   +K+ +K +++G ++ + +      +    +  
Sbjct: 116 KKLKPTFKQFNLIKGMKQKFGMQALWQGVKALLKTVVIGAVLYLLIQGMIPVIQQSGALT 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             ++L +A     +++   +     L +LD+     +   K KM+K+EIKDE K + G+P
Sbjct: 176 MRAVLGYASEKFMQLMWTAVAAGIALAILDVVVVMKRNRKKTKMTKKEIKDENKNTEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K   +S   +  R++M+ + + A +++ NPTH A+AL Y+  E  AP LVAKG+NL+A
Sbjct: 236 LLKGAIRSRQLAMSRNRMIASVADADVVVVNPTHVAVALTYVAGE-GAPKLVAKGKNLVA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++R+ A  H++P+  +  LAR+L     I   IPP  + AVAQ++  +   +
Sbjct: 295 QRIREEAEAHDVPLVRDIPLARALNAHCEIGHPIPPALFTAVAQVLAFVMLLR 347


>gi|108563180|ref|YP_627496.1| flagellar biosynthesis protein FlhB [Helicobacter pylori HPAG1]
 gi|107836953|gb|ABF84822.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
          Length = 358

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L      L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLVKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346


>gi|317182082|dbj|BAJ59866.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F57]
          Length = 358

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA LI +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLISIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EHNI I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHNIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|118581843|ref|YP_903093.1| flagellar biosynthesis protein FlhB [Pelobacter propionicus DSM
           2379]
 gi|118504553|gb|ABL01036.1| type III secretion exporter [Pelobacter propionicus DSM 2379]
          Length = 324

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 165/322 (51%), Gaps = 4/322 (1%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +   +++  +I L  F S  + S+      +L      +L +  ++  L+  L      
Sbjct: 2   MTSTFTLMVGMICLYVFGSFMMSSIERQSEEILEGVGSFELTE-GNVYLLVLKLFFLILV 60

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNH--VKPSFKRVSLREGIKRIYSINNLVNFMKS 151
           ++ P ++  M+  I S++IQ           V     +++   G KR+++   LV  +KS
Sbjct: 61  VLAPLVVTVMLTSIASHVIQDGGRFEFQWQRVTFDITKLNPLNGFKRLFNKTALVEILKS 120

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           F+K++++G I    L +    +     A+   IL +      K+++     +  +++LD+
Sbjct: 121 FLKLVVIGWIAYRVLKDEVQNIALLADADMVGILAYMGRVAFKIVVHTCGIMLIISILDL 180

Query: 212 GWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            +    +   LKM+KQE+KDE K+   NP IK + K +     + +M +    A ++ITN
Sbjct: 181 MYVKWNYLDGLKMTKQEVKDEHKEQE-NPEIKGQIKKMQYQAAKRRMTKIIPTADVVITN 239

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTHYA+AL+Y +    APV+VAKG +++A+ ++KIA E ++ + E   LAR L+ QV  N
Sbjct: 240 PTHYAIALKYDRQRMIAPVVVAKGVDIMAQAIKKIAQESSVTLVENRFLARELYDQVEEN 299

Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
            AIP   Y AVA+++  +Y  K
Sbjct: 300 EAIPETLYAAVAEVLAYVYRLK 321


>gi|116328495|ref|YP_798215.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331225|ref|YP_800943.1| endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121239|gb|ABJ79282.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124914|gb|ABJ76185.1| Endoflagellar biosynthesis protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 510

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 165/345 (47%), Gaps = 2/345 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE  S ++  +   +GN P S E      +LA +I +              L   
Sbjct: 160 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILIYLMGEYFFMRTFYILRKY 219

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +    QR       +  LL + S     L+ P L +  +  +   + Q   +     +  
Sbjct: 220 IHGVGQRTDISSESVTELLKNASTDLFTLLWPLLGITFVGAVIGNVAQVGFIFTPRALSF 279

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F R+      K + +   L N  KS  K+ L+  +  I +++++F++L          +
Sbjct: 280 NFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFSILISGEMGLEQAV 338

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                +  K+ +++ + +  ++++D  +  +++   LKM+  E K E K+S G+  ++ R
Sbjct: 339 ALVMSSSFKIFLVVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 398

Query: 246 QKSIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           ++ +AR  +  + M+     A ++ITNPTH+A+AL Y    + AP+++AKG +  A  + 
Sbjct: 399 RRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLII 458

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +IA E+ +P  E+   AR L+++V + + +P  FY+A+A ++ ++
Sbjct: 459 RIARENGVPTVEDRIQARGLYEEVELGAEVPQQFYRAIATILSRL 503


>gi|51103002|gb|AAT96149.1| HrcU [Pseudomonas viridiflava]
 gi|51103057|gb|AAT96203.1| HrcU [Pseudomonas viridiflava]
          Length = 359

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 150/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMAVSEVTLGLADESVNRLQALLALSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L  + H+      + +S +   +    L M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFLSAVEHLTSEGLSVLISFTLCSV---GLAMLMRLISSWVQVGFLFAPKALKIDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  N+   + S +K + +   +   +     T++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNISTLLLSILKAVAIAATLYSQVKPALGTLIILANSDLVTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + + D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILRVILGLLLAIAMADFALQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LSHEILNQEPTAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEDALDLIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A    IP+ +   LAR+L++ V +   IP    +AV  +   +   
Sbjct: 300 RAKRAGIPVVQSIWLARTLYR-VQVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|251789490|ref|YP_003004211.1| YscU/HrpY family type III secretion protein [Dickeya zeae Ech1591]
 gi|247538111|gb|ACT06732.1| type III secretion protein, YscU/HrpY family [Dickeya zeae Ech1591]
          Length = 361

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 166/348 (47%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A L  +L     G+  + + + + L+ 
Sbjct: 3   EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +         +      L+L A+  ++   +  +M  +G + IQ  P+  +  +K  F 
Sbjct: 63  ISDPFGHAADEVFS--EALALLATFCLLTISVALLMRIVGGW-IQYGPLFAVEALKLDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++    IK+++++  L + + + +K   +G +  + +T     +++    +  +     
Sbjct: 120 RLNPINQIKQMFTMRKLTDMLTNLLKATTIGLVFWLVVTPQLEWLVELAYGDLTAFWKGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ V    L  +  L V D G   + +  + +MS ++I++E K S G+P +K  +KS
Sbjct: 180 ENVLKSVSRTTLSALLALGVFDFGLQKYYFLKQQRMSHEDIRNEYKNSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A+  +      ++      A +++ NPTHYA+AL Y   +   P ++ KG++  A+ + 
Sbjct: 240 VAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDDHARALI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A++  +P+     LAR+L++ VP    IP    + VAQ+ YK+  +
Sbjct: 300 ARAHQAGVPVIRFIWLARTLYR-VPEGHYIPRDTLQPVAQV-YKVLRQ 345


>gi|237799998|ref|ZP_04588459.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022853|gb|EGI02910.1| type III secretion protein HrcU [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 359

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 150/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KT+  + K++ DA  +G    S++      +LA     L      +  + + L +    
Sbjct: 3   EKTQKATPKQLRDAREKGQVGQSQDIGKLLVLLAVSEVTLSLADESVNRLQALLALSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +  +  I      + LS +   +    L M+  + S  +Q   +     +K    
Sbjct: 63  IDRPFMSSVELIANEGFSVLLSFTLCSV---GLAMLMRLISSWMQIGFLFAPKALKIDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  N+ N + S +K   +  ++   +     +++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNITNLLMSILKASAIAAVLYTQVKPELGSLVLLANSDLQTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + + D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 LELFRHILRVILGLLLVIAMADFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  + +
Sbjct: 240 LSHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDDEALALIE 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   LAR+L+K V     IP      VA +   +   
Sbjct: 300 RAKKAGIPVVQNIWLARTLYK-VKPGKYIPRPTLLIVAHIYKVVRQL 345


>gi|94968667|ref|YP_590715.1| type III secretion exporter [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550717|gb|ABF40641.1| type III secretion exporter [Candidatus Koribacter versatilis
           Ellin345]
          Length = 351

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 172/351 (49%), Gaps = 8/351 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++    +KTE P+ ++ + A  +G    SRE     +I+  L+++L   S  +++   
Sbjct: 1   MADS----SKTEQPTQQRRKKAREKGQVARSRELPGALTIIVVLVWILSLNSVALFTWRG 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LL  A    L++++    LL      A++  +  +L        S L+Q   V + 
Sbjct: 57  FYRSLLQQA---ALQELTLSPALLQKTIWVAAQWTVVPMLGAFAIATASTLLQGGFVFSS 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    +R+S    +K+I+S   L N +KS +    +  +    +   + T +      
Sbjct: 114 EALAWKPERLSPGHRLKQIFSAAGLSNTLKSLLPFAAILWLAVSQIRSEWVTFIRLGGLP 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              I          ++    L +   + LD      +    LKMS++EIK E K+S GNP
Sbjct: 174 VARIGSWLLAQCVALVWKCCLVLLLWSALDYLLQRQRLEGDLKMSREEIKQEFKESEGNP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + + R   R +M+ A   AT+++TNPTHYALAL Y      APVLVAKG + +A
Sbjct: 234 QVKAKIRRMQRQVRRQQMLHAVKAATVVVTNPTHYALALEYRPDFA-APVLVAKGLDRLA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++++++A  H IP+ E  +LA +L++ V +  AIP   + AVA+++  +Y 
Sbjct: 293 EEIKQVAIWHEIPLVENRALAHALYRSVEVGQAIPSKLFTAVAEVLAAVYR 343


>gi|331005442|ref|ZP_08328821.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
 gi|330420718|gb|EGG95005.1| Flagellar biosynthesis protein FlhB [gamma proteobacterium
           IMCC1989]
          Length = 361

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 186/350 (53%), Gaps = 3/350 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  +   +TE P+  K+++A + G    S E +   + L+ +++L +     I +   
Sbjct: 1   MSEEQS-QERTEKPTPFKLKEARDRGQVSKSTELNSLFA-LSSVLFLSYLVGEQIVNSQL 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +     +   S  + L   +      +  P + L +   I S L+Q  P+L+ 
Sbjct: 59  LLSKKLLTYDFHTIGSTSGALLLFEQIKDGLINIYWPLIFLIIFISIVSNLVQTGPILSF 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  +R++  +G K+I+S   +  F+K+ +K+IL  T+  I++ E    +L+ I   
Sbjct: 119 FPLKPDTQRLNPIKGFKKIFSKRMIYEFIKTTIKLILFATVAYITIDELLIVLLNLIDIQ 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P S         + + I +LL +    ++D  ++  ++  +++MS ++IKDE+K+  G+P
Sbjct: 179 PESYPLKLVTFAQSLGIKMLLVVLLAALVDFAYTRWEFIQQMQMSHKDIKDEVKKREGDP 238

Query: 241 IIKNRQKSIARSRIR-HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           +I+++++ + +  +   K +     A ++ITNPTH A+AL++ Q E  +P + AKG   +
Sbjct: 239 LIRSKRRELQKEAVEKSKSLSNVPDADVLITNPTHLAIALKFNQQEMTSPHVTAKGSGEL 298

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A++M+ +A +H + I E   LARS++ +  INSAI   +Y+ +A++   +
Sbjct: 299 AQQMKILARKHKVAIVENKPLARSMYNRTRINSAISEEWYQPIAKIYAWL 348


>gi|149926083|ref|ZP_01914346.1| Type III secretion component protein SctU [Limnobacter sp. MED105]
 gi|149825371|gb|EDM84582.1| Type III secretion component protein SctU [Limnobacter sp. MED105]
          Length = 353

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 157/346 (45%), Gaps = 4/346 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P+ KK++DA  +G   +S++A +   +L   ++  +         +  L +++
Sbjct: 2   SGEKTEKPTQKKLDDARKKGQVSVSKDAQILFKLLMFYMFFFWLSQDYAARFSELLDLIV 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +  ++       I  +   L ++   + +P + +  +        Q   +++   + PS
Sbjct: 62  TAGLKQPWTFSESIFSMFFDLFVA---ITVPLVAVCAIAATLITWAQIGFLVSPEALTPS 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           FK+      IK ++S  +LV  + S VK++++  +  +   +N   M+    A       
Sbjct: 119 FKKFDAVSNIKNMFSKKSLVQLLLSIVKVLILSVVGYLVFKDNMGDMIYSYRAGLTQFFD 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ ++ + L+    + V+D    Y      L+MS Q+I DE KQS GNP +K R 
Sbjct: 179 VLVHVLKAIIFVSLIIFMVIAVIDWSVEYMHHIKNLRMSHQDIADERKQSMGNPQLKQRM 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K   RS +   +    + A  I+ NPTH ++AL Y   ++D P ++A G +  A ++R+ 
Sbjct: 239 KREHRSILNSSL-TRVAGAKAIVANPTHISVALDYEPGKHDLPYILAMGTDDEALRIREF 297

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           A ++ IPI     LAR L++    +  I     +  AQ+   +   
Sbjct: 298 AKKNGIPIIVNVKLARMLYQDCEEDEYIQREHLELAAQVFRAVMEM 343


>gi|217077044|ref|YP_002334760.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B]
 gi|217036897|gb|ACJ75419.1| flagellar biosynthetic protein FlhB [Thermosipho africanus TCF52B]
          Length = 312

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 160/309 (51%)

Query: 45  IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMM 104
           +    F   GI           +         I  +              +I  + L M+
Sbjct: 1   MLGFAFLGRGIIIGLQSAVAFFSKLPSYDSLTIQDLGIYTIEAFKGVIIDLIIFVGLVMI 60

Query: 105 FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
            GI +  +Q   ++    +K  F +++   G+KR++S+ +L   +KS +K+++VG +  +
Sbjct: 61  TGIITGSLQTKFLITFKSIKLDFSKINPISGLKRMFSLRSLFELLKSILKLVIVGYVGYL 120

Query: 165 SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM 224
            +  N+  +L     +        +    ++LI   + +  +++ D  +S +++   ++M
Sbjct: 121 VVKSNWNKLLLATDTSVSEGALLIWDITFELLIKCGIALFIVSIADYFFSRYEYEKNIRM 180

Query: 225 SKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQT 284
           +KQE+K+E K+  GNP IK +Q+ I      H+MM+    AT+++TNPTH+A+A++Y   
Sbjct: 181 TKQEVKEEFKEVEGNPEIKRKQRQIMMQYSMHRMMQEVPEATVVVTNPTHFAVAIKYDSD 240

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E D P++VAKG + +A+K+++IA ++N+PI   P LAR L+  V I   IP   Y+AVA+
Sbjct: 241 EMDVPIVVAKGADKLAQKIKEIARKNNVPILRNPPLARELYFSVEIGDEIPQKLYRAVAE 300

Query: 345 LIYKIYHKK 353
           ++  +Y  K
Sbjct: 301 VLAYVYTLK 309


>gi|50121004|ref|YP_050171.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560427|gb|AAS20387.1| HrcU [Pectobacterium atrosepticum]
 gi|49611530|emb|CAG74978.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 359

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 154/348 (44%), Gaps = 8/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+EDA  +G    S++       +  L  +L      +  + + + + L  
Sbjct: 3   EKTEQPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 +    +       ++ A  L +    + ++  I    +Q  P+     +K    
Sbjct: 63  LGTPFAQVAKEV---FHDAAVLAGTLCLLSAAIAVLLRIAGGWLQYGPLFAPEALKLDLN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  LV  + + +K +++GT+    +      +++    + H      
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K  +KS
Sbjct: 180 KALLTRITRTTLTALLVLSALDFGMQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A          +       A +++ NPTHYA+ L Y   +   P ++ KG+N  A+++ 
Sbjct: 240 LAHELANESAAPRPKPKLEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENKAAQELI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A +  IP+     L R+L++  P    IP    +AVAQ+ Y++  +
Sbjct: 300 AQAKKAGIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346


>gi|51103122|gb|AAT96265.1| hrcU [Pseudomonas viridiflava]
          Length = 361

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 151/342 (44%), Gaps = 9/342 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A +  +L     G+  + + + + L  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  +   LT         ++P L +     +    +Q  P+   + +K  F+
Sbjct: 63  LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S   L N   S  K +++  ++ + L      ++     +  S     
Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                 +    L  +  L  LD     + +    +MS ++I+ E K+S G+P +K+ +K+
Sbjct: 180 VELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239

Query: 249 IARSRIRHKMMEA-----TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +AR         A        A +++ NPTH+A+AL Y   +   P ++ KG++  A+++
Sbjct: 240 LAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEAREL 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            + A E  +P+     LAR+L+++  +   IP    +AVAQ+
Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340


>gi|224531929|ref|ZP_03672561.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116]
 gi|224511394|gb|EEF81800.1| flagellar biosynthetic protein FlhB [Borrelia valaisiana VS116]
          Length = 372

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +    +L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSAEINTAVGLLLLSALFFFMLSYFALDLVAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +   +     I  + F      +    L        +       ++Q    +    ++P
Sbjct: 81  ASKLPEVMKMSIYAMGFAYIRSIMGYVVL---FFFASLAVNFFVNIVQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 KWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIFYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           + +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 TGISIVLVLAYKICFFSVIFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ +A  
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEMALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|227114165|ref|ZP_03827821.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 359

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 155/348 (44%), Gaps = 8/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+EDA  +G    S++       +  L  +L      +  + + + + L  
Sbjct: 3   EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICIGLLECVLTLADSTMGKLQTLVQLPLQR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 +    +       ++ A  L +    + ++  +    +Q  P+     +     
Sbjct: 63  LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALNLDLN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  LV  + + +K +++GT+    +      +++    + H      
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K  +KS
Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +      +       A +++ NPTHYA+ L Y   +   P ++ KG++  A+++ 
Sbjct: 240 LAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGEDSAARELI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + +IP+     L R+L++  P    IP    +AVAQ+ Y++  +
Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346


>gi|289810262|ref|ZP_06540891.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 247

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/215 (32%), Positives = 125/215 (58%)

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++S       +K+ +K  LVG +    L  ++  M+  ++ +P   + +A   V    ++
Sbjct: 1   MFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALL 60

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           ++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P +K + + + R+  + +M
Sbjct: 61  VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRM 120

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           ME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA ++R+I  EH +P  E P
Sbjct: 121 MEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAP 180

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215


>gi|298346009|ref|YP_003718696.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC
           43063]
 gi|315657498|ref|ZP_07910380.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236070|gb|ADI67202.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii ATCC
           43063]
 gi|315491970|gb|EFU81579.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 367

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 186/354 (52%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+      KTE  + +K++    EG    S++ + + S+ A    L         +   
Sbjct: 1   MSD---SGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119
                + + T  K+   S +V  L     +    ++P +L  ++  +   +IQ   V  +
Sbjct: 58  Q---TITAVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPS 114

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             H+KP  + ++L +GIK++  +  L N +K+ +K + VG ++ + ++     M      
Sbjct: 115 AKHLKPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHI 174

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  +++ +    +  ++   ++    ++VLD  + + +   + KMSKQEIK+E KQ  G+
Sbjct: 175 SLWNLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGD 234

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK++++S A +  R++M+   + A +++ NPTHYA+AL+Y   +  AP ++AKG + +
Sbjct: 235 PMIKSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHV 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R++A +  IP  E+ SLAR+L+  V + +AIP   Y AVAQ++  +   K
Sbjct: 294 AARIREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347


>gi|51103164|gb|AAT96306.1| HrcU [Pseudomonas viridiflava]
          Length = 361

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 150/342 (43%), Gaps = 9/342 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A +  +L     G+  + + + + L  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  +   LT         ++P L +     +    +Q  P+   + +K  F+
Sbjct: 63  LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S   L N   S  K +++  ++ + L      ++     +  S     
Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                 +    L  +  L  LD     + +    +MS ++I+ E K+S G+P +K+ +K+
Sbjct: 180 VELFTHLSRTCLGLLLVLAGLDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239

Query: 249 IARSRIRH-----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +AR                  A +++ NPTH+A+AL Y   +   P ++ KG++  A+++
Sbjct: 240 LAREITDQPGSAVPARAPVEDADMLLVNPTHFAVALFYRPEQTPLPRIICKGRDAEAREL 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            + A E  +P+     LAR+L+++  +   IP    +AVAQ+
Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340


>gi|253688600|ref|YP_003017790.1| type III secretion protein, YscU/HrpY family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755178|gb|ACT13254.1| type III secretion protein, YscU/HrpY family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 359

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 156/348 (44%), Gaps = 8/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+EDA  +G    S++       +  L  +L      +  + + + + L  
Sbjct: 3   EKTEQPTDKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 +    +       ++ A  L +    + ++  I    IQ  P+     +K    
Sbjct: 63  LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRIVGGWIQYGPLFAPEALKLDLN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  LV  + + +K +++GT+    +      +++    + H      
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K  +KS
Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +      +       A +++ NPTHYA+ L Y   +   P ++ KG++  A+++ 
Sbjct: 240 LAHELMNEPAAPRPKAKVEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGEDSAAQELI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + +IP+     L R+L++  P    IP    +AVAQ+ Y++  +
Sbjct: 300 AQAKKADIPVIRFIWLTRTLYRTTPEGQYIPRETLQAVAQV-YRVLRQ 346


>gi|187918146|ref|YP_001883709.1| flagellar biosynthesis protein FlhB [Borrelia hermsii DAH]
 gi|119860994|gb|AAX16789.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
          Length = 373

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 165/350 (47%), Gaps = 8/350 (2%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
              + +TE P+ +K + A  +G    S E +   ++        F  S        +L  
Sbjct: 21  SEDEGRTELPTEQKKQKAREDGQVLKSTEINSAVTLFILFAVFFFMLSY----FAQELMN 76

Query: 65  LLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +      +  E +S  ++ L+   +      +I  LL+  +      +IQ   ++    V
Sbjct: 77  VFRWQAGKLPEIMSVSIYALSFSYIKPMFGYMIVFLLISFIVSFLINVIQVGFLITFKPV 136

Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            P + RV+    + IK  + S +   N  KS  KI ++  I  I L  N   +      +
Sbjct: 137 VPRWDRVNPNFSKWIKNSFGSFDAFFNLFKSLSKIAIISLIYYIMLKSNIGKISRMSEYS 196

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +        ++    ++ +  +++LD  +   ++   LKM+K+E+K E K+  G+P
Sbjct: 197 LEDGISVILSLAYRICFFSIIVLMGISILDYLFQRTRYIENLKMTKEEVKQERKEMEGDP 256

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++++R +   R  +   +     +A ++ITNP H+A+A+++      AP ++AKGQ+ IA
Sbjct: 257 LLRSRMRERMREILNTNLRVTVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIA 316

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             +++IA E+NIP+ E   LAR L+  V +N  IP  +++ V++++ K+Y
Sbjct: 317 FVIKQIARENNIPVMENKPLARELYANVDVNEEIPREYWEIVSKILVKVY 366


>gi|85059286|ref|YP_454988.1| secretion system apparatus protein SsaU [Sodalis glossinidius str.
           'morsitans']
 gi|84779806|dbj|BAE74583.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 354

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 149/343 (43%), Gaps = 3/343 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE P+ K+  D   EG    S E +    + A L++   F    I   ++ + + ++
Sbjct: 2   GEKTEKPTEKRRRDRRKEGQVIKSNEITSGVQLAAILLFWHLFAEAVIERTSTLIVLSIS 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
              +  L   +    LL  +  SA  L      +  +  +GS L+Q   VL    V    
Sbjct: 62  LINRPFLFAFNQ---LLHVVLSSAGLLFALFGGMLALATVGSVLLQIGFVLASKAVGIKG 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R++    +K+I+S+++LV   KS  K++++  I          T       N    L  
Sbjct: 119 RRINPVSNLKQIFSLHSLVELCKSTGKVVVLTLIFAGLFYYYATTFQALPFCNSRCALPL 178

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
                R +   ++ F   L VLD  +  H    + +MSK+E+K E K + G+P +K R+ 
Sbjct: 179 FTTFTRWMWFGLIGFYIVLGVLDYAFQAHNTLKQQRMSKEEVKQEYKDAEGDPYMKQRRH 238

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            +        +     R+ ++I NPTH A+ L Y   +   P ++ KG    A ++  +A
Sbjct: 239 EMQHEIQSGSLAHNVKRSAVVIRNPTHIAICLGYHPIDMPVPRVLDKGTAERAGQIVDLA 298

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
               +P+ E   LAR+LF+ V     IP   ++ VA L+  + 
Sbjct: 299 QRAAVPVVENIPLARALFQHVGCGDRIPETLFEPVAVLLRMVL 341


>gi|331664423|ref|ZP_08365329.1| surface presentation of antigens protein SpaS [Escherichia coli
           TA143]
 gi|331058354|gb|EGI30335.1| surface presentation of antigens protein SpaS [Escherichia coli
           TA143]
          Length = 370

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|227328488|ref|ZP_03832512.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 359

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 156/348 (44%), Gaps = 8/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+EDA  +G    S++       +  L  +L      +  + + + + L  
Sbjct: 3   EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 +    +       ++ A  L +    + ++  +    +Q  P+     +K    
Sbjct: 63  LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALKLDLN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  LV  + + +K +++GT+    +      +++    + H      
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + ++    L  +  L+VLD G   + +  + +MS +++++E K S G+P +K  +KS
Sbjct: 180 KALLTRIARTTLTALLVLSVLDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +      +       A +++ NPTHYA+ L Y   +   P ++ KG+N  A+ + 
Sbjct: 240 LAHELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENQAARDLI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + +IP+     L R+L++  P    IP    +AVAQ+ Y++  +
Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346


>gi|304390233|ref|ZP_07372187.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326715|gb|EFL93959.1| flagellar biosynthesis protein FlhB [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 367

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 186/354 (52%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+      KTE  + +K++    EG    S++ + + S+ A    L         +   
Sbjct: 1   MSD---SGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119
                + + T  K+   S +V  L     +    ++P +L  ++  +   +IQ   V  +
Sbjct: 58  Q---TITAVTFTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGRGVFPS 114

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             H+KP  + ++L +GIK++  +  L N +K+ +K + VG ++ + ++     M      
Sbjct: 115 AKHLKPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHI 174

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  +++ +    +  ++   ++    ++VLD  + + +   + KMSKQEIK+E KQ  G+
Sbjct: 175 SLWNLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGD 234

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK++++S A +  R++M+   + A +++ NPTHYA+AL+Y   +  AP ++AKG + +
Sbjct: 235 PMIKSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHV 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R++A +  IP  E+ SLAR+L+  V + +AIP   Y AVAQ++  +   K
Sbjct: 294 AARIREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347


>gi|111115097|ref|YP_709715.1| flagellar biosynthesis protein FlhB [Borrelia afzelii PKo]
 gi|110890371|gb|ABH01539.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
          Length = 372

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFFFMLSYFALDLAAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +  ++     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  ASKLSEVMKMSVYAMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + +   +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ +A  
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEMALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+NIP+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|224437175|ref|ZP_03658156.1| flagellar biosynthesis protein FlhB [Helicobacter cinaedi CCUG
           18818]
 gi|313143640|ref|ZP_07805833.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
 gi|313128671|gb|EFR46288.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
          Length = 377

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 177/347 (51%), Gaps = 5/347 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KT+APS+ KI  A  EGN   S E + F  +L  L   +F   P     +  + + 
Sbjct: 2   ADEEKTQAPSTHKIAKAREEGNVSKSPELAGFFILLVGL-GAMFLLLPFWVEHSQKIFIH 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + S   +++ D+  +  L+  + L    ++ P  +  M+ G+ + + Q   +L+   +KP
Sbjct: 61  INSLITQEV-DVRMLGDLMLSIGLEVFIMLAPLFVALMVTGVIANIAQFGLLLSPKAIKP 119

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   GIK + S+  L++     +K+ +   +        +  +     +  +  +
Sbjct: 120 KLSKINPITGIKNVISLKKLLDGFMITLKVFVAFIVGFAVFVSFFNELSSVSMSGLYGQI 179

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    ++ ++L+    + V D     +Q+   LKMS +E+KDE KQ   +P IK +
Sbjct: 180 MWFRQKALILIGVLLILFFIMAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQSPEIKAK 239

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ---TENDAPVLVAKGQNLIAKK 302
            + + +    ++MM+    A+++ITNPTHYA+ALRY +    +   PV+VAKG + +A +
Sbjct: 240 IRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYGEKEIEKGMPPVVVAKGIDELAIR 299

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           ++ +A E+ I I E P LAR L++Q+ +N AIP   + AV Q++ ++
Sbjct: 300 IKGVAREYEIRIIENPPLARELYRQLDLNQAIPHDLFAAVGQVLQEV 346


>gi|163733157|ref|ZP_02140601.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149]
 gi|161393692|gb|EDQ18017.1| flagellar biosynthetic protein FlhB [Roseobacter litoralis Och 149]
          Length = 362

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 161/349 (46%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+   + +K+ +A  +G    S E    +S    L+ +L     G+  + +
Sbjct: 1   MSAPDDEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLVAILVSGESGLSHLGA 60

Query: 61  DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            L V++  + Q   L            +  +    ++P  +   +  + +    R  V  
Sbjct: 61  TLAVIIGQSAQIAPLFFDGAGTVPARGIIQATGSALLPIFVYPALAVMLALFATRGIVFA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
            + V+P   +VS+    K  Y    L  F+ SF K+++   I+ I L      M+  +  
Sbjct: 121 PSKVQPKLSKVSIISNAKNKYGRTGLFQFVLSFSKLMIYSAILAIFLYHRTSEMVAALHT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P   +        + LI +++  A +  +D  W + +   K KMS++E+ DE K S G+
Sbjct: 181 TPQYTVILLAKICIEFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDETKNSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  ++  A+S    ++    + A ++I NPTH+A+AL++ +    APV VAKG +  
Sbjct: 241 PYMKQERRQRAQSLAGSQVAVEVAAADVVIVNPTHFAVALKWERAPGQAPVCVAKGVDET 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A ++R+IA E+ +PI  +P  AR+L     +   I P  YKAVA  I  
Sbjct: 301 ALRIREIAKENAVPIHSDPPTARALHSTTNVGDQIAPEHYKAVAAAIRF 349


>gi|284922800|emb|CBG35888.1| type III secretion system protein [Escherichia coli 042]
          Length = 370

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPMPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYTTHRRYDYV 320


>gi|323966652|gb|EGB62084.1| YscU/HrpY family protein type III secretion protein [Escherichia
           coli M863]
 gi|323978521|gb|EGB73603.1| YscU/HrpY family protein type III secretion protein [Escherichia
           coli TW10509]
 gi|327251613|gb|EGE63299.1| surface presentation of antigens protein spaS [Escherichia coli
           STEC_7v]
          Length = 370

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|300936205|ref|ZP_07151141.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           21-1]
 gi|300458662|gb|EFK22155.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           21-1]
          Length = 370

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + I+     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|301027459|ref|ZP_07190796.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           69-1]
 gi|300394967|gb|EFJ78505.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           69-1]
          Length = 370

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  T +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWTNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|315654597|ref|ZP_07907503.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333]
 gi|315491061|gb|EFU80680.1| flagellar biosynthesis pathway [Mobiluncus curtisii ATCC 51333]
          Length = 367

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 186/354 (52%), Gaps = 8/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+      KTE  + +K++    EG    S++ + + S+ A    L         +   
Sbjct: 1   MSD---SGEKTEKATPRKLKKVREEGGLQKSQDLTGWISLAAGAALLPSLIDTAFQNARR 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL-N 119
                + + T  K+   S +V  L     +    ++P +L  ++  +   +IQ   V  +
Sbjct: 58  Q---TITAVTLTKIPSQSELVGYLGSSLGTIVWTLLPFMLAILLIAVMVNIIQGKGVFPS 114

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
             H+KP  + ++L +GIK++  +  L N +K+ +K + VG ++ + ++     M      
Sbjct: 115 AKHLKPKLQNLNLVKGIKKVVGVQALWNGLKALLKTVAVGVVLYVVISGVTEVMGAAGHI 174

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +  +++ +    +  ++   ++    ++VLD  + + +   + KMSKQEIK+E KQ  G+
Sbjct: 175 SLWNLIAYGQGKMWLLIWASVIAGIVVSVLDALFIFKKNQKQTKMSKQEIKEEYKQDEGD 234

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P+IK++++S A +  R++M+   + A +++ NPTHYA+AL+Y   +  AP ++AKG + +
Sbjct: 235 PMIKSQRRSRAIAMSRNRMIADAANADVVVVNPTHYAVALKYEAGQ-GAPKVLAKGVDHV 293

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A ++R++A +  IP  E+ SLAR+L+  V + +AIP   Y AVAQ++  +   K
Sbjct: 294 AARIREVAQDSKIPQVEDVSLARTLYSTVEVGAAIPEELYTAVAQVLAFVLILK 347


>gi|307131233|ref|YP_003883249.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
 gi|306528762|gb|ADM98692.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
          Length = 359

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 162/348 (46%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A L  +L     G+  + + + + L+ 
Sbjct: 3   EKTEKPTPKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            T         I      L  +   L I   LL  + G     IQ  P+  +  +K  F 
Sbjct: 63  ITDPFGHAADEIFSEALSLLTTFCLLTISVALLMRLVG---GWIQYGPLFAVEALKIDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++    IK+++++  L + + + +K + +G +  + +      +++    +  +     
Sbjct: 120 RLNPINQIKQMFTMRKLTDMLTNILKAVTIGLVFWLVVMPQLEWLVELAYGDLTTFWKGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ V    L  +  L VLD G   + +  + +MS ++I++E K S G+P +K  +KS
Sbjct: 180 ENVLKSVARTTLSALLALGVLDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A+  +      ++      A +++ NPTHYA+AL Y   +   P ++ KG++  AK + 
Sbjct: 240 VAQEILNEPASPRVKPKVEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDDQAKALI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A++  +P+     LAR+L++ +P    IP    + VAQ+ YK+  +
Sbjct: 300 ARAHQAGVPVIRFIWLARTLYR-IPEGHYIPRDTLQPVAQV-YKVLRQ 345


>gi|331654348|ref|ZP_08355348.1| surface presentation of antigens protein SpaS [Escherichia coli
           M718]
 gi|331047730|gb|EGI19807.1| surface presentation of antigens protein SpaS [Escherichia coli
           M718]
          Length = 370

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|34500880|gb|AAQ73908.1| HrcU [Pectobacterium carotovorum subsp. carotovorum]
          Length = 359

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 155/348 (44%), Gaps = 8/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+EDA  +G    S++       +  L  +L      +  + + + + L  
Sbjct: 3   EKTEEPTEKKLEDARRKGEVGQSQDVPKLLICVGLLECVLALADSTMGKLQTLVQLPLQR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 +    +       ++ A  L +    + ++  +    +Q  P+     +K    
Sbjct: 63  LDAPFAQVAKEV---FHDAAVLAGTLCLLAAAIAVLLRVVGGWLQYGPLFAPEALKLDLN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  LV  + + +K +++GT+    +      +++    + H      
Sbjct: 120 RLNPINQFKQMFSMRKLVEMLTNILKAVVIGTVFYKVVVPELEALVELAYGDLHGFWQGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + ++    L  +  L+ LD G   + +  + +MS +++++E K S G+P +K  +KS
Sbjct: 180 KALLTRIARTTLTALLVLSALDFGLQKYFFLKQQRMSHEDLRNEHKDSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +      +       A +++ NPTHYA+ L Y   +   P ++ KG+N  A+ + 
Sbjct: 240 LAHELMNEPAAPRPKANIEDADMLLVNPTHYAVGLYYRPGKTPLPRILFKGENQAARDLI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + +IP+     L R+L++  P    IP    +AVAQ+ Y++  +
Sbjct: 300 AQAQKADIPVIRFIWLTRTLYRTTPEGHYIPRETLQAVAQV-YRVLRQ 346


>gi|216263954|ref|ZP_03435948.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1]
 gi|215979998|gb|EEC20820.1| flagellar biosynthetic protein FlhB [Borrelia afzelii ACA-1]
          Length = 372

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAISLLLLFALFFFMLSYFALDLAAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +   +     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  ASKLPEVMKMSVYAMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + +   +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ +A  
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMIAPRVLAKGQDEMALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+NIP+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNIPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|219684572|ref|ZP_03539515.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr]
 gi|219685776|ref|ZP_03540587.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04]
 gi|219671934|gb|EED28988.1| flagellar biosynthetic protein FlhB [Borrelia garinii PBr]
 gi|219672715|gb|EED29743.1| flagellar biosynthetic protein FlhB [Borrelia garinii Far04]
          Length = 372

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 160/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFSLFFFMLSYFALDLVAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +   +     +  + F      +    L     +  ++      +IQ    +    ++P
Sbjct: 81  ASKLPEVMRMSVYSMGFAYIRAIIGYVVL---FFIAALVVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + +   +     K   +S     N  KS +K++++  I    +  N   +        +
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLN 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVVLSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|293416105|ref|ZP_06658745.1| type III secretion protein SctU [Escherichia coli B185]
 gi|291432294|gb|EFF05276.1| type III secretion protein SctU [Escherichia coli B185]
          Length = 370

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 149/326 (45%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          +     + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGFGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 CHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|225551932|ref|ZP_03772872.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1]
 gi|225370930|gb|EEH00360.1| flagellar biosynthetic protein FlhB [Borrelia sp. SV1]
          Length = 372

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L     L  +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|225549000|ref|ZP_03769975.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a]
 gi|225370226|gb|EEG99664.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 94a]
          Length = 372

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 159/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L        ++      +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLVVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S   + N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|292487013|ref|YP_003529883.1| type III secretion protein HrcU [Erwinia amylovora CFBP1430]
 gi|292900602|ref|YP_003539971.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|1181176|gb|AAB06008.1| HrcU [Erwinia amylovora]
 gi|291200450|emb|CBJ47579.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552430|emb|CBA19475.1| Type III secretion protein HrcU [Erwinia amylovora CFBP1430]
          Length = 360

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 162/348 (46%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q     +S +V   +   +  +      + +  +  I    IQ  P+     ++P F 
Sbjct: 63  IGQPFELALSEVV---SSAIILVATFCGLTVAIAALLRIIGGWIQYGPLFAPEALQPDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  L   + S VK + + TI  + LT +  ++      +  S     
Sbjct: 120 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSRLAYGDLDSFWPAV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  V    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+P +K  + +
Sbjct: 180 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239

Query: 249 IARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +         +    A +++ NPTHYA+AL Y       P ++ KG++  AK++ 
Sbjct: 240 LAHELLNQPATAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDQQAKELI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + NIP+     LAR+L++       IP    +AVAQ+ Y++  +
Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345


>gi|224534194|ref|ZP_03674772.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S]
 gi|224514296|gb|EEF84612.1| flagellar biosynthetic protein FlhB [Borrelia spielmanii A14S]
          Length = 372

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 160/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E ++  S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSNEINIAISLLLLFALFFFMLSYFALDLVAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +   +     +  + F       S    V+      +       +IQ    +    ++P
Sbjct: 81  ASKLPEVMKMSVYAMGFAYIR---SIVGYVVLFFFASLAVNFFINIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIESNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVVLSTNLRVAVPQADVVITNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+NIP+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNIPLMENKLLARALYTNVKVNEEIPREYWEVVSKILVRVY 365


>gi|216264909|ref|ZP_03436901.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a]
 gi|221217819|ref|ZP_03589287.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a]
 gi|215981382|gb|EEC22189.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 156a]
 gi|221192496|gb|EEE18715.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 72a]
          Length = 372

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L     L  +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|224533751|ref|ZP_03674339.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a]
 gi|224513044|gb|EEF83407.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi CA-11.2a]
          Length = 372

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 159/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L     L  +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S   + N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|224533155|ref|ZP_03673755.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23]
 gi|224511882|gb|EEF82283.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi WI91-23]
          Length = 372

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 159/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L     L  +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFLASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S   + N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|32266517|ref|NP_860549.1| flagellar biosynthesis protein FlhB [Helicobacter hepaticus ATCC
           51449]
 gi|32262568|gb|AAP77615.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
           51449]
          Length = 375

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 174/347 (50%), Gaps = 5/347 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A + KT+APS+ KI+ A  EGN   S E + F  +L  L  L+F   P        +   
Sbjct: 2   ADEEKTQAPSAHKIQKAREEGNVSKSPELAGFFILLVGL-GLMFLLIPFWIECAQRIFHH 60

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           +       + D   +  L+  + L    ++ P  L+ M+ G+ + + Q   +L+   +KP
Sbjct: 61  INKLIILDV-DRRLLGNLMLSIGLEVFFMLAPLFLVLMITGVIANIAQFGLLLSPKAIKP 119

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              +++   GIK + S+  +++     +K+ +   +        +  +     +  +  +
Sbjct: 120 KISKINPITGIKNVISLKKILDGFMITLKVFVAFIVGFAVFVSFFNELPSVSMSGLYGQI 179

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                    ++ ++L+    + V D     +Q+   LKMS +E+KDE KQ   +P +K +
Sbjct: 180 MWFRQKALILIGVLLILFFIMAVSDYLIKRYQYIKSLKMSIKEVKDEYKQYEQSPEVKAK 239

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE---NDAPVLVAKGQNLIAKK 302
            + + +    ++MM+    A+++ITNPTHYA+ALRY + E      P+LVAKG + +A +
Sbjct: 240 IRQMQQKIASNRMMQEIPSASVVITNPTHYAVALRYSEKEIAQGMPPILVAKGIDELAIR 299

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           ++ IA E++I I E P LAR L++Q+ +N  IP   + AV Q++ ++
Sbjct: 300 IKSIAREYDIKIIENPPLARELYRQLDLNQVIPHDLFAAVGQVLSEV 346


>gi|297621085|ref|YP_003709222.1| type III secretion inner membrane protein SctU [Waddlia
           chondrophila WSU 86-1044]
 gi|297376386|gb|ADI38216.1| type III secretion inner membrane protein SctU [Waddlia
           chondrophila WSU 86-1044]
          Length = 375

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 151/347 (43%), Gaps = 3/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK+ DA  +G    S++     + +  +  +L         V   +     
Sbjct: 2   GEKTEKATPKKLRDAKKKGQVAKSQDFPSAFTFVTSIALILGLSGFMFSKVGGFIESTFK 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
             +  ++  +  I  +     L+    VIP +    + G+    +   PV      K   
Sbjct: 62  LVSHDEISVV--IPTMFREALLTIFSTVIPVMAAVALMGVVVNFLSVGPVWATEVFKFDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+    + +K  + I  LV  +KS +KI +   +I   + ++   +    +    S L  
Sbjct: 120 KKFDPIQNLKSKFKIKTLVELIKSCLKIGIAAWLIYGVMYKSLPVLTQAATMPIESSLLI 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + +V+I + +F   + VLD  +  + +  ++ M K E+K E K + G+P IK+++K
Sbjct: 180 FKAFLMEVVIKVGIFFLVVAVLDFAYQKYNFGKEMMMEKFEVKQEYKNTEGDPQIKSKRK 239

Query: 248 SIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
             A+          A  +A  +ITNP   A+A+ Y +  + AP ++  G+ ++A+++   
Sbjct: 240 QTAQEIAYSDGPAAAVQKAAAVITNPVQLAIAVGYNREIDAAPYILVMGEGILAERIVHY 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A +  +PI     LA  L+ +  I   IP   Y+A+A+++  I   +
Sbjct: 300 ANKSEVPIVRNIELAHKLWLEGEIFEYIPEDTYEAMAEILRWINSLE 346


>gi|218706359|ref|YP_002413878.1| surface presentation of antigens protein SpaS [Escherichia coli
           UMN026]
 gi|300898070|ref|ZP_07116438.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           198-1]
 gi|218433456|emb|CAR14358.1| Surface presentation of antigens protein [Escherichia coli UMN026]
 gi|300358208|gb|EFJ74078.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           198-1]
          Length = 370

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    +K  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAIKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALAIKLFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  G+P IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGSPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|312171082|emb|CBX79341.1| Type III secretion protein HrcU [Erwinia amylovora ATCC BAA-2158]
          Length = 360

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 162/348 (46%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q     +S +V   +   +  +      + +  +  I    IQ  P+     ++P F 
Sbjct: 63  IGQPFELALSEVV---SSAIILVATFCGLTVAIAALLRIIGGWIQYGPLFAPEALQPDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  L   + S VK + + TI  + LT +  ++      +  S     
Sbjct: 120 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLSRLAYGDLDSFWPAV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  V    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+P +K  + +
Sbjct: 180 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239

Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +         +    A +++ NPTHYA+AL Y       P ++ KG++  AK++ 
Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDQQAKELI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + NIP+     LAR+L++       IP    +AVAQ+ Y++  +
Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345


>gi|108764098|ref|YP_633783.1| FlhB/HrpN/YscU/SpaS family type III secretion protein [Myxococcus
           xanthus DK 1622]
 gi|108467978|gb|ABF93163.1| type III secretion protein, FlhB/HrpN/YscU/SpaS family [Myxococcus
           xanthus DK 1622]
          Length = 349

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 145/340 (42%), Gaps = 10/340 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE PS+K++ +A  +G  P SR  +  +     L  L      G+  +        
Sbjct: 2   SGEKTEKPSAKRLREARRKGQIPRSRLLNASAVTAGGLFGLTAAAPVGMARL-------- 53

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
             A    L      +         A+R   P L       +   +       +L HV+P 
Sbjct: 54  -QAWTEHLFLGQQDLGAWQEGLWIAARFCGPVLGGAFAAALLVSVATVGLEADLQHVEPK 112

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +R+SL  G++R++S    V   K+ + + LVG ++   + E     +          L 
Sbjct: 113 LERISLVAGMQRLFSWRPWVELAKTLLIVCLVGALVWSDVEEAAPDAMKTAWLGGAEGLS 172

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A   V  +   +   +  L V D   ++ +    L M+++E+K E K S G+P  K ++
Sbjct: 173 LAVAHVSGLASRLACLLVVLGVGDYALAWRRHIKDLMMTREEMKREYKDSEGDPRHKGQR 232

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K++ R   +        +AT ++ NPTH A+ALRY   E +AP LVAK +   A+ MR+ 
Sbjct: 233 KALHRQLAQGGAARGVQKATAVVVNPTHIAVALRYDVDECEAPYLVAKAREGDARAMREQ 292

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           A    I +  +  LARSL     +   IP   Y+A A ++
Sbjct: 293 ARRLGIAVVRDIPLARSLIH-YDVGEPIPEELYQAAAVVL 331


>gi|322432982|ref|YP_004210231.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9]
 gi|321165209|gb|ADW70913.1| type III secretion exporter [Acidobacterium sp. MP5ACTX9]
          Length = 367

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 176/351 (50%), Gaps = 8/351 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++++    KTE  + K+ + A  +G    S+E     +I   +  L       +   T+
Sbjct: 1   MADSN----KTEEATPKRRQKAREQGQVARSKELPSVLAIAGAIGALCMMSQSAVTHWTT 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L +A+   LE    I+F     S+   R +IP L+   +  + + L Q    +  
Sbjct: 57  FYRSMLDTASTSDLESNGPILF---WGSVEVFRWIIPVLMSATVLSVAAGLAQGGLSIAP 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++  F+R +    + +I+S+  + N +KS +    +  I    +  N+  ++   S  
Sbjct: 114 EAMQLKFERFNPASKVGQIFSLAGVSNMLKSLLPFGAIAWIGEACIRSNWGMLIRASSFG 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              ++      + +V     L +     +D   ++ +    LKMSK+EIK+E KQ+ GNP
Sbjct: 174 LRQLVTTLGGMIFEVAWKSALVLVAWAGVDYLLTWKKMEGDLKMSKEEIKEEYKQNDGNP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +IK+R + + R   + + + A + AT+I+TNPTHYA+ALRY   E  AP +V+KG NL+A
Sbjct: 234 LIKSRIRRLQRRMRKKQALAAAATATVIVTNPTHYAVALRYTP-EMAAPEVVSKGMNLLA 292

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++++ +  E+ I I E   LA++L+K V +   IP   Y+AVA ++  ++ 
Sbjct: 293 QQIKALGAENGIMILENKPLAQALYKTVEVGEVIPSTLYQAVADILVIVFR 343


>gi|312148485|gb|ADQ31144.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi JD1]
          Length = 372

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S   + N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|195941374|ref|ZP_03086756.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi 80a]
 gi|312149299|gb|ADQ29370.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi N40]
          Length = 372

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S   + N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|27904722|ref|NP_777848.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395823|sp|Q89AN6|FLHB_BUCBP RecName: Full=Flagellar biosynthetic protein flhB
 gi|27904119|gb|AAO26953.1| flagellar biosynthetic protein FlhB [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 382

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 176/350 (50%), Gaps = 1/350 (0%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  + KTE+P+S +++ +   G+    RE      IL   +   ++    I ++   + 
Sbjct: 3   HDESEEKTESPTSYRLKISKETGHNRYYRELYSLL-ILTITLINFWYNQRLILTLLKRIF 61

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            L  +      ++   +      +       ++  +   M+  +   +I      N   +
Sbjct: 62  YLSFTFNNSIFQNDLFLDHNFLMIFQDNLISLLGIIFFPMLIFMFPAMILCCSNFNFKFI 121

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           K    +++   G K ++SI ++V+  K+ +KI+ V  ++ + +++ +  +    +     
Sbjct: 122 KFDINKLNPILGFKNVFSIKSIVDLFKTVLKIVFVSIVVYLFISKYFLKVCFSSNFTFDY 181

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           IL ++  T+    + IL+F   + ++D+ W  + +Y  L+M+++E+ DE+K   GNP IK
Sbjct: 182 ILNYSVRTIFLCFLTILIFFIPIIIIDLFWEKYNFYRSLRMTRKEVSDELKNMEGNPRIK 241

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +R + I  S    +M+   S++ +I+ NP HYA+A++Y +T   AP ++AKG + +A K+
Sbjct: 242 SRIRQIMFSISNRRMLSNVSKSDVIVVNPMHYAIAIKYNETNMYAPKILAKGIDELAIKI 301

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +KI   H+IP     SLA  L+ +  +   IP V Y+AVA+++  ++  +
Sbjct: 302 KKIGNNHSIPTLVSHSLAHVLYYRTEVGEYIPSVLYEAVAEVLAWVWKIR 351


>gi|254253714|ref|ZP_04947031.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124898359|gb|EAY70202.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 403

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 163/345 (47%), Gaps = 7/345 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK++    EG    S +    +S+ + ++ L    + G + +   L  ++
Sbjct: 53  SDEKTEEPTHKKLDKVREEGQVAKSADVVEVASLGSIVLVL----TAGQHYLADTLRAIV 108

Query: 67  ASA--TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A        ++  +  +L H+ + A  L+     + ++  I +   Q    ++L  V 
Sbjct: 109 KEAVDFTHGARELQDLWTVLVHIGVQALGLLCGIAAVALVAAIVALAPQTGFKISLKAVM 168

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P    VS   G +RI+S+N+ ++  K   K  ++  ++  ++      +   +  +   +
Sbjct: 169 PKLASVSPGSGFQRIFSMNSAIDLAKMVGKAAILVAVMWQTIKSAMPVVASALDQSVPQL 228

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +   +  +  V+ + L     +   D       +  K +MSK E+K E K+S GNP +K 
Sbjct: 229 IGVLWSVLMHVVAVALGVFVVIGAFDYKLQKWLFIRKNRMSKDEVKREHKESEGNPELKG 288

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            +K +AR   +       +RA +++ NP HYA+ALRY   E   PV++AKG +  A ++R
Sbjct: 289 ERKRMAREMSQEGPKGGVARANVVVVNPVHYAVALRYDPAEFPLPVVLAKGLDEQALRLR 348

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           + A   ++PI   P +AR L K VP+N  IP   ++ VA ++  +
Sbjct: 349 QQAMHAHVPIVANPPVARMLHK-VPLNQPIPEELFEVVAAILRWV 392


>gi|225550105|ref|ZP_03771065.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a]
 gi|225369217|gb|EEG98670.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 118a]
          Length = 372

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|15594617|ref|NP_212406.1| flagellar biosynthesis protein FlhB [Borrelia burgdorferi B31]
 gi|218249479|ref|YP_002374795.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7]
 gi|223888974|ref|ZP_03623565.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b]
 gi|226321590|ref|ZP_03797116.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26]
 gi|3023773|sp|Q44760|FLHB_BORBU RecName: Full=Flagellar biosynthetic protein flhB
 gi|1165257|gb|AAA85596.1| FlhB [Borrelia burgdorferi]
 gi|2688194|gb|AAC66676.1| flagellar biosynthesis protein (flhB) [Borrelia burgdorferi B31]
 gi|218164667|gb|ACK74728.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi ZS7]
 gi|223885790|gb|EEF56889.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 64b]
 gi|226232779|gb|EEH31532.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi Bol26]
          Length = 372

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|330809227|ref|YP_004353689.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377335|gb|AEA68685.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 357

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 172/350 (49%), Gaps = 5/350 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+     +K+E  +  K+E+A  +G  P S +   F  +L  L+       P    + +
Sbjct: 1   MSDQ---QDKSEEATPYKLEEARKKGQVPRSPDLLSFIMLLTFLMVFSAIAYPLASVIAA 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
             H  L +A Q   +   ++     +        ++P +   ++  I + L+   PV ++
Sbjct: 58  HTHWWLGNAGQLG-QGFGYLGEQGGYSLRQVVYGLLPLIGALVLMAILTNLLFSGPVFSM 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP FKR+   +G+K+++S    V  +K  VK  L   ++          +L   + +
Sbjct: 117 TALKPDFKRLHPIQGLKKLFSRRMFVELIKVLVKGALFSLVLYYLFQSVLPQLLGMATIS 176

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +       + ++   +L  +A   + DI +S  ++  +++MS++E KDE ++  G+P
Sbjct: 177 PLELPQAGKQLLMQLGFTVLAVMAAAALFDIWYSRREFGRQMRMSRRETKDEHRRREGDP 236

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
            ++ ++K I ++ ++    +     A +IITNPTHYA+AL+Y  +   AP ++A G+ L 
Sbjct: 237 EVRAKRKGIQQALLKKAAALGQVKDADVIITNPTHYAVALQYRPSSMLAPKVLAMGRGLH 296

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A+++  +A +H +PI   P LAR+L     ++SAIP      VA++   +
Sbjct: 297 ARRICHVARKHQVPILRRPPLARALHALARVDSAIPDSTQADVARIYRWV 346


>gi|261839413|gb|ACX99178.1| flagellar biosynthetic protein [Helicobacter pylori 52]
          Length = 358

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         I  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESIQKLFNQLAKDTFLLLLPILIILVVMAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALALISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|51598532|ref|YP_072720.1| flagellar biosynthesis protein FlhB [Borrelia garinii PBi]
 gi|51573103|gb|AAU07128.1| flagellar biosynthesis protein [Borrelia garinii PBi]
          Length = 372

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 160/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFSLFFFMLSYFALDLVAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            +   +     +  + F      +    L     +  ++      +IQ    +    ++P
Sbjct: 81  ASKLPEVMRMSVYSMGFAYIRAIIGYVVL---FFIASLVVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKR--VSLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + +   +     K   +S     N  KS +K++++  I    +  N   +        +
Sbjct: 138 RWDKVSFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLN 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + VLD  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVLDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++I NP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKDRMRVVLSTNLRVAIPQADVVIVNPEHFAVAIKWDSETMLAPRVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEVVSKILVRVY 365


>gi|310766415|gb|ADP11365.1| HrcU [Erwinia sp. Ejp617]
          Length = 365

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 167/348 (47%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 8   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 67

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q     +S +V   + L L A+   +   +  ++  IG + IQ  P+     +KP F 
Sbjct: 68  IGQPFELALSEVVS--SALVLVATFCGLTVAIAALLRIIGGW-IQYGPLFAPEALKPDFN 124

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  L   + S VK + + TI  + LT +  ++      +  S     
Sbjct: 125 RLNPINQFKQMFSVKKLSEMLNSIVKAVAICTIFYLVLTPDLESLARLAYGDLDSFWPAV 184

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  V    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+P +K  + +
Sbjct: 185 ETLLIHVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 244

Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +   +     +    A +++ NPTHYA+AL Y       P ++ KG++  AK + 
Sbjct: 245 LAHELLNQPVAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 304

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + NIP+     LAR+L++       IP    +AVAQ+ Y++  +
Sbjct: 305 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 350


>gi|1216382|gb|AAB00549.1| FlhB' [Treponema pallidum]
          Length = 366

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 163/338 (48%), Gaps = 9/338 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + ++E P+  K+  A  EG  P S++ +    +L     L       +      L   
Sbjct: 23  EDEGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTSLFLLAPFILRECIGVLRFF 82

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
              AT   +++       + +      +L +P   + ++ G+ + ++Q    + ++  ++
Sbjct: 83  FTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSVKSIR 138

Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P FK++S       KR  +S   L N +KS +KI  +  +   ++  + F  +  +  + 
Sbjct: 139 PQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLLGVSL 198

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +++      KVL+ + L +   ++ D  +   Q+   LKMS+QE+K+E+K+  G+P+
Sbjct: 199 TQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQEGDPL 258

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +++  +      +  +    T+ A ++ITNPTH+A+A++Y      AP +VAKG +  A 
Sbjct: 259 VRSYVR-KQMQSLVRESARNTTDADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSDGTAY 317

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
           +++++A E  I I E   LAR+L+ QV I   +P  ++
Sbjct: 318 RIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYF 355


>gi|15639702|ref|NP_219152.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025940|ref|YP_001933712.1| flagellar biosynthesis protein FlhB [Treponema pallidum subsp.
           pallidum SS14]
 gi|6225351|sp|O83710|FLHB_TREPA RecName: Full=Flagellar biosynthetic protein flhB
 gi|3323017|gb|AAC65681.1| flagellar biosynthetic protein (flhB) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018515|gb|ACD71133.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
           SS14]
          Length = 376

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/352 (23%), Positives = 169/352 (48%), Gaps = 9/352 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + ++E P+  K+  A  EG  P S++ +    +L     L       +      L   
Sbjct: 23  EDEGRSEDPTETKLRKAREEGRVPKSQDLNGAFVMLFTSTSLFLLAPFILRECIGVLRFF 82

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI-PVLNLNHVK 124
              AT   +++       + +      +L +P   + ++ G+ + ++Q    + ++  ++
Sbjct: 83  FTRATTASIQNTGWFFVFVRYFM----KLALPISFVALVSGVAANIVQNKTVLFSVKSIR 138

Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P FK++S       KR  +S   L N +KS +KI  +  +   ++  + F  +  +  + 
Sbjct: 139 PQFKKISPDVIRFFKRSFFSTEGLFNLLKSLIKITAIFFVSYFTIRNDLFMFVSLLGVSL 198

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +++      KVL+ + L +   ++ D  +   Q+   LKMS+QE+K+E+K+  G+P+
Sbjct: 199 TQSIFYITSLAGKVLLEVSLLLVVFSLPDYFFQRRQFIDSLKMSRQEVKEELKEQEGDPL 258

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +++  +      +  +    T+ A ++ITNPTH+A+A++Y      AP +VAKG +  A 
Sbjct: 259 VRSYVR-KQMQSLVRESARNTTDADVVITNPTHFAVAVQYEPAYMTAPTVVAKGSDGTAY 317

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +++++A E  I I E   LAR+L+ QV I   +P  ++ A+  +  K+   K
Sbjct: 318 RIKRLAKEAGILIEENKPLARALYTQVAIGREVPYEYFNALVLIFTKLDKFK 369


>gi|15803385|ref|NP_289418.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 EDL933]
 gi|15832975|ref|NP_311748.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747673|ref|ZP_02772695.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753787|ref|ZP_02778794.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759977|ref|ZP_02784984.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766842|ref|ZP_02791849.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775726|ref|ZP_02800733.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778863|ref|ZP_02803870.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168799982|ref|ZP_02824989.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195936469|ref|ZP_03081851.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806601|ref|ZP_03248938.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813845|ref|ZP_03255174.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818835|ref|ZP_03259155.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399671|ref|YP_002272329.1| hypothetical protein ECH74115_4137 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327346|ref|ZP_03443429.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794804|ref|YP_003079641.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. TW14359]
 gi|12517360|gb|AAG57977.1|AE005514_14 putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. EDL933]
 gi|13363193|dbj|BAB37144.1| type III secretion protein EprS [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768810|gb|EDU32654.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017892|gb|EDU56014.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003231|gb|EDU72217.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358704|gb|EDU77123.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363851|gb|EDU82270.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369301|gb|EDU87717.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377676|gb|EDU96092.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208726402|gb|EDZ76003.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735122|gb|EDZ83809.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738958|gb|EDZ86640.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161071|gb|ACI38504.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217319713|gb|EEC28138.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594204|gb|ACT73565.1| putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. TW14359]
 gi|320189195|gb|EFW63854.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. EC1212]
 gi|326339064|gb|EGD62879.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. 1044]
 gi|326343055|gb|EGD66823.1| surface presentation of antigens protein SpaS [Escherichia coli
           O157:H7 str. 1125]
          Length = 373

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 150/326 (46%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|330812427|ref|YP_004356889.1| type III secretion protein, membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|312597804|gb|ADQ89919.1| RscU [Pseudomonas fluorescens]
 gi|327380535|gb|AEA71885.1| putative type III secretion protein, putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 366

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 166/354 (46%), Gaps = 10/354 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+     KT+  + KKI DA N+G    S++ S    + A     L      + ++  
Sbjct: 1   MSED--SGEKTKRATPKKIRDARNKGQVGQSQDLSSLLVLAAITEVALTQADDSMQALGD 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   L    +  ++ +      L H         +  + L ++  + +  IQ   +   
Sbjct: 59  MVTFPLH---RLDVDFVRAFEETLAHAGGVLLNFTLMTVGLAIVTRLVAGWIQFGFLFAP 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   R++     K+++S   L+N     VK + +GT+I +       ++++ ++ +
Sbjct: 116 EALQPDPNRLNPMNQAKQMFSGQALINLFMGLVKAVFIGTVIYLVTLPALGSLINLVNGD 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
            +S         R ++ + L  +  L +LD G   + +  +L+MS++E++ E K+  G+P
Sbjct: 176 LNSYWRGLASLFRHIMHICLGVLLVLALLDFGLQKYFFAKRLRMSEEEVRKEFKEMEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
            +K  ++S+AR  +   + +       A +++ NPTH+A+AL Y   E   P L+ KG +
Sbjct: 236 HVKMHRRSLARQLVDQPVNKETKPVEDADMLVVNPTHFAVALLYRPEETPLPQLIVKGVD 295

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A+ + + A    +P+ +   LAR+++++  + + IP    +AVA + Y++  
Sbjct: 296 AEARALIERAKVARVPVIQCIWLARTIYRE-DVGAYIPRETLQAVAHI-YRVLR 347


>gi|226320572|ref|ZP_03796132.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805]
 gi|226233991|gb|EEH32712.1| flagellar biosynthetic protein FlhB [Borrelia burgdorferi 29805]
          Length = 372

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKAREEGRVLKSTEINTAVSLLLLFTLFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S   + N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAVFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVLAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+ +++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVVIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|51103205|gb|AAT96346.1| HrcU [Pseudomonas viridiflava]
          Length = 361

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 151/342 (44%), Gaps = 9/342 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G    S++        A +  +L     G+  + + + + L  
Sbjct: 3   EKTEEPTQKKLDDARKKGQVGQSQDVPKLFIFAALMEMILGLVDGGMSRLKALIALPLTE 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  +   LT         ++P L +     +    +Q  P+   + +K  F+
Sbjct: 63  LDRPFNAALGEV---LTKAGWELLLFMLPVLGIAAAMRLAGGWVQFGPLFATDSLKLDFE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S   L N   S  K +++  ++ + L      ++     +  S     
Sbjct: 120 RLNPINQFKQMFSSRQLFNLFNSLCKAVMITCVLYVLLPPALGDLIGLARTDLDSYWMAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                 +    L  +  L  LD     + +    +MS ++I+ E K+S G+P +K+ +K+
Sbjct: 180 VELFTHLSRTCLGLLLVLAALDFALQKYFFVKGQRMSHEDIRKEYKESEGDPHMKSHRKA 239

Query: 249 IARSRIRHKMMEA-----TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +AR         A        A +++ NPTH+A+AL Y   +   P ++ KG++  A+++
Sbjct: 240 LAREITDQPGSAAPARAPVEDADMLLVNPTHFAVALFYRPDQTPLPRIICKGRDAEAREL 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            + A E  +P+     LAR+L+++  +   IP    +AVAQ+
Sbjct: 300 IERAREAGVPVVRFVWLARTLYRE-NVGQFIPRATLQAVAQV 340


>gi|149184191|ref|ZP_01862509.1| type III secretion exporter [Erythrobacter sp. SD-21]
 gi|148831511|gb|EDL49944.1| type III secretion exporter [Erythrobacter sp. SD-21]
          Length = 387

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 164/353 (46%), Gaps = 3/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D P  K  AP+ K++ DA  +G+   S++A   + +L    +L     P +    +
Sbjct: 1   MSE-DTPGEKNFAPTEKRLADAAKKGDVLRSKDAGTAAVMLFGGAWLA-LAGPWLLEGLT 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           DL           L D S +  LL    L     V    +  ++  + S L         
Sbjct: 59  DLARDAFLFDASDLRDFS-VQGLLIEGLLLGVPAVFALAVPVIVVTLFSQLAFGRGRWVT 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           +++K   +R++   G+KR++ +  L+   K  +KI L+G+I       +   ++     N
Sbjct: 118 DNLKAKGQRINPMSGLKRMFGMQGLIEMGKGLLKIALLGSIAAAWWWNSMDVVIGLGRGN 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L  A+  +  ++  +   +  +  +D+   + +   +LKMS QE++DE K+S G+P
Sbjct: 178 LSAQLTAAWRAIVSLVFALSAGLVVIAFVDLPIQWLRQQKRLKMSHQEMRDENKESEGSP 237

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            ++  ++   R      +  A   A  +I NPTH+A+AL Y      AP+L+AKG+   A
Sbjct: 238 EMRAARRQRQRDIATGSVAGAMREAQFVIANPTHFAVALTYDPARASAPILLAKGRGDKA 297

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
             M+++A E ++P  E P LARS++        I    Y AVA +I  ++  K
Sbjct: 298 LAMKELASELDLPTLEMPQLARSVYYTTRERQIICEDLYSAVASVIAYVFSLK 350


>gi|213416632|ref|ZP_03349776.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 338

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 142/329 (43%), Gaps = 3/329 (0%)

Query: 23  LNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
             EG    S E +    ++A  +Y  FF    I  +   +   L    +     ++ +  
Sbjct: 3   RKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSH 62

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
            L     SA   +  G    ++  +GS  +Q   V+    +    + ++     K+I+S+
Sbjct: 63  ALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSL 119

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
           +++V   KS +K+I++  I          T            +      ++ + + ++ F
Sbjct: 120 HSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSSLIKWLWVGVMAF 179

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262
              + +LD  + Y++    LKMSK ++K E K   G+P +K R++ +        + ++ 
Sbjct: 180 YIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSV 239

Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322
            ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ E   LAR
Sbjct: 240 KQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELAR 299

Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           SLF +V     IP   ++ VA L+  +  
Sbjct: 300 SLFFEVERGDKIPETLFEPVAALLRMVMK 328


>gi|17549085|ref|NP_522425.1| type III secretion system protein HrcU [Ralstonia solanacearum
           GMI1000]
 gi|547676|sp|P35652|HRCU_RALSO RecName: Full=Hypersensitivity response secretion protein hrcU
 gi|6066705|emb|CAB58251.1| HrpN protein [Ralstonia solanacearum]
 gi|17431336|emb|CAD18015.1| hrp conserved hrcu transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|1097284|prf||2113360K hrpN gene
          Length = 357

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+EDA  +G    S + +  + +L+  + L    S       + L + L
Sbjct: 2   SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              + R    +  +   ++H +L    + +P   +F +    +   Q   VL+   V+  
Sbjct: 62  DVDSSR--HPLMTLKQTISHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++   G+KRI+S+ ++++ +K  +K + V   +   +     +++     +   I  
Sbjct: 120 MSAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLILILMPSIVGAAYQSVMDIAE 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + ++L         L   D G     +    +MSK E+K E K S G+P IK  +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239

Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  +R+
Sbjct: 240 KKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A    IPI   P LARSL++ V +   +P   ++ VA+++  +
Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVLAWV 342


>gi|46446384|ref|YP_007749.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400025|emb|CAF23474.1| putative type III secretion pathway protein sctU [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 357

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 166/347 (47%), Gaps = 3/347 (0%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            +KTE  + KK++DA  +G    S++     + +A +  +L   S   + + + L     
Sbjct: 2   GDKTEKATPKKLKDAKKKGQIAKSQDLPTAFTFIASVAIILALASSLYHQLANFLVGTFR 61

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           S    +L  +  IV L    +       IP + L  + G+    +   PV      K   
Sbjct: 62  SVNTPELSGV--IVNLFYKANEVIFLASIPTMALVALVGVTITFLTVGPVFAPEVFKFDI 119

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           K+ +  + +K  + +  LV  +KS +KI +   +I   +  +   ++  +S      L  
Sbjct: 120 KKFNPVDNLKAKFKLKTLVELLKSVIKISIASYLIYKVMYNSIPVLIQTVSMPISGALIV 179

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
               + +V++ + LF   + V D  +    +  ++ M K E+K E K S G+P IK +++
Sbjct: 180 FHAFLVEVVLKVGLFFIVVAVADFIYQKKTFAKEMMMEKFEVKQEYKNSEGDPHIKGKRR 239

Query: 248 SIARSRIRHK-MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
            IA+     +       RA  ++TNPTH A+A+ Y +  + AP ++A G++++A+++ KI
Sbjct: 240 QIAQEIAYQEGPTGGVKRAQAVVTNPTHLAIAIGYERHMDAAPYILAMGKDVLAERIVKI 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A +++IP+    +LA  L++Q  I   +P   Y+A+A+++  I   K
Sbjct: 300 AEKNDIPVLRNITLAHILWEQGEIYEYVPEDTYEALAEIMRWIASLK 346


>gi|149200776|ref|ZP_01877751.1| Flagellar protein FlhB [Roseovarius sp. TM1035]
 gi|149145109|gb|EDM33135.1| Flagellar protein FlhB [Roseovarius sp. TM1035]
          Length = 384

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 87/359 (24%), Positives = 164/359 (45%), Gaps = 11/359 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLF--FFSPGIYSV 58
           M++ D    KTE P+ K+ ++A  EG    S E  +  ++    + L    +  PG+  +
Sbjct: 1   MADADDGQEKTEEPTQKRRQEAREEGRITTSTEVFVLVTLGMGALILSAGQWALPGLAGL 60

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            +   +++  A       I H   ++  +  +   L +P L   +M              
Sbjct: 61  WAT-GLVIDGAQSLDAMMIGHTRDMMLWMLAAGPGLGLPLLAAVLMAQSA----MGGLNF 115

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
               +    ++++   G+ R+ S+  LV+ +K+ +K+ L+     + L      +    +
Sbjct: 116 APKALGFKPEKMNPMTGLGRMVSMKALVDLLKAVLKVTLLLAAGVLMLYPLLPALGSSSA 175

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
             P   +      + +VL  +LL +  +  LD+GW  H     ++MS+Q+IKDE K+S G
Sbjct: 176 LAPGDAMVLFGTAMLRVLGGLLLGLVVIAALDLGWQIHSNTKSMRMSRQDIKDESKESEG 235

Query: 239 NPIIKN--RQKSIA--RSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           +P  K   R++ +   R     K +     AT IITNPTH+A+ALRY    + AP ++A 
Sbjct: 236 SPEQKGAMRRRQMQASRRASERKALADVPMATAIITNPTHFAIALRYEPGTDTAPRILAM 295

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G+  +A+ + +      +   + P LAR+L+    I   IP V + AVA ++  ++  +
Sbjct: 296 GKGPMAQAVIRRGRRAGVTTLQVPPLARALYFTGAIGREIPDVLFAAVAVILAHVWRLE 354


>gi|167584007|ref|ZP_02376395.1| type III secretion system protein [Burkholderia ubonensis Bu]
          Length = 361

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  +    S     +T  +   L      +     
Sbjct: 14  LKKVREKGQVAKSKDVADAVTLAAVIGVMTAGESMLTGGLTRAIRTALDFVQGER--TPQ 71

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P ++  ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 72  ATLAALHDLAASAALTMLPFVVAAIVAGIVSQAPQAGFMITLEPVMPKFDALNPMNGIKR 131

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +I   +T  +  ++  +      +    +  + K+L +
Sbjct: 132 IFSLKSLLELVKMIVKAVVLACVIWKMMTSLFPLVVASVYEPTPQLSRVLWTVLMKLLGV 191

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           ++L +      D   +   +    +M+K+E K E K+S G+P  K  ++ +AR       
Sbjct: 192 VVLVVVVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAP 251

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 252 PRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           P +AR+L++ V  ++AIP   ++ VA ++  +
Sbjct: 312 PPVARALYR-VERDAAIPEELFETVAAILRWV 342


>gi|317010987|gb|ADU84734.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           SouthAfrica7]
          Length = 358

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLILPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KAIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+   LKM+KQE+KDE KQ  G+P
Sbjct: 175 LKGQLLWFKNKALLLISSLLFLFFVLAFIDLVIKRRQYTHSLKMTKQEVKDEYKQQEGSP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  P++VAKG + +A
Sbjct: 235 EIKAKIRQMMMKNAANKMMQEIPKANVVVTNPTHYAVALQFD-EEHPVPIVVAKGTDHLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346


>gi|297379968|gb|ADI34855.1| flagellar biosynthetic protein FlhB [Helicobacter pylori v225d]
          Length = 358

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQELFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|203284193|ref|YP_002221933.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
 gi|201083636|gb|ACH93227.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
          Length = 373

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 168/350 (48%), Gaps = 8/350 (2%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
              + +TE P+ ++ + A  EG    S E +   S+        F  S        +L  
Sbjct: 21  SEDEGRTEVPTEQRKQKARREGQVLKSIEINSSISLFILFAVFFFMLSY----FAQELMD 76

Query: 65  LLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +      +  E +S  ++ L+   +    R V    ++  + G    ++Q   V+ L  +
Sbjct: 77  IFKWQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPI 136

Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            P + R++    + +K  + S++   N  KS +KI ++  I  I L  N   +      +
Sbjct: 137 MPKWDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSNIGKISKMPEYS 196

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +        ++    ++ +  L+VLD  +   ++   LKM+K+EIK E K+  G+P
Sbjct: 197 LEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGDP 256

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++++R +   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA
Sbjct: 257 LLRSRMRERMREILNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIA 316

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             +++IA E+N+ I E   LAR L+  V IN  IP  +++ V++++ K+Y
Sbjct: 317 FVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366


>gi|219566954|dbj|BAH04985.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
          Length = 357

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 159/344 (46%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+EDA  +G    S + +  + +L+  + L    S       + L + L
Sbjct: 2   SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDLAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              + R    +  +   +++ +L    + +P   +F +    +   Q   VL+   V+  
Sbjct: 62  DVDSSR--HPVMTLKQTISYFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++   G+KRI+S+ ++++ +K  +K + V   +   +     +++     +   I  
Sbjct: 120 MSAINPASGLKRIFSVRSMIDLVKMIIKGVAVAAAVWKLILILMPSIVGAAYQSVMDIAE 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + ++L         L   D G     +    +MSK E+K E K S G+P IK  +
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239

Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  +R+
Sbjct: 240 KKLARELADEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A    IPI   P LARSL++ V +   +P   ++ VA+++  +
Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPESLFETVAEVLAWV 342


>gi|258626191|ref|ZP_05721039.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603]
 gi|258581546|gb|EEW06447.1| Flagellar biosynthetic protein flhB [Vibrio mimicus VM603]
          Length = 255

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 129/230 (56%)

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P   +++   G KR++ + + V  +KS +K++LV  +    +  +   +          
Sbjct: 1   MPKLSKMNPLSGFKRMFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQ 60

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
            ++HA   +   +++I   +  +  +DI +   Q  ++LKM+KQE+KDE K + G P +K
Sbjct: 61  NIFHALDILLNFVLLISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVK 120

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
            R + + R   + +MM A  +A +IITNP H+++ALRY Q  + APV++AKG + +A K+
Sbjct: 121 GRIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKI 180

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           R+IA E++I I   P LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 181 REIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 230


>gi|114799674|ref|YP_759006.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739848|gb|ABI77973.1| FlhB/HrpN/YscU/SpaS family protein [Hyphomonas neptunium ATCC
           15444]
          Length = 357

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 168/354 (47%), Gaps = 1/354 (0%)

Query: 1   MSEND-APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
           M+E D     K    S +++ DA  +G+ P S+EA+ F+ IL  LI  L   +     + 
Sbjct: 1   MAEQDQDSGEKEFDASEQRLRDARKDGDVPQSKEANAFALILGILIAALILDAVVGPKLF 60

Query: 60  SDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            D   +L        +              +    + P LL+     + + +IQ+    +
Sbjct: 61  DDFSRILYHGDAFAADIFEGDGGATWAWIATTLLALSPLLLVMAALVLVALIIQQSIAFS 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              + P  K+++  + IK  Y    L +F+K  VK++    + T+ L +         S 
Sbjct: 121 AKKIMPDMKKINPVDNIKNKYGTKGLTDFLKDTVKMLFAAGLGTLFLIQFTRDYYGSSSV 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
           +        F    ++++    F   L  LD+   +     KL+M+++++K E+KQS G+
Sbjct: 181 DTADFYQFTFNQTLRLILYFFAFQFVLAALDLPLQWRIHSHKLRMTREDMKKEMKQSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P ++ +++  A    R +M++    AT+++ NPTHYA+AL++      APV VAKG + +
Sbjct: 241 PHMRQQRREKATKISRGQMLQNVKSATVVMVNPTHYAVALKWDPDSKLAPVCVAKGTDHL 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A K+R++A E+N+PI+ +P   RS++  V ++  I    + AVA  I  +   +
Sbjct: 301 AMKIRELAIENNVPIYSDPPATRSIYSMVEVDQEIQAEHFAAVAAAIQFVDRLR 354


>gi|308182928|ref|YP_003927055.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4]
 gi|308065113|gb|ADO07005.1| flagellar biosynthesis protein FlhB [Helicobacter pylori PeCan4]
          Length = 358

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLMIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|82795281|gb|ABB91650.1| type III secretion protein HrcU [Pseudomonas syringae pv. tagetis]
          Length = 359

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 152/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      +LA     L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLADESVNRLQALLGLSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +  +  I      + LS +   +    L M+  + S  +Q   +     +K    
Sbjct: 63  IDRPFMASVELIANEGFSVLLSFTLCSV---GLAMLMRLISSWMQIGFLFAPKALKLDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  N++N + S +K + +G  +   +     T++   ++   +  +  
Sbjct: 120 KINPFSHAKQMFSGQNILNLVLSVLKALAIGATLYSQVKPALGTLILLANSELTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               +  L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K+ ++ 
Sbjct: 180 VELFQHTLRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKDHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  + +
Sbjct: 240 LSHEILNQEPSAAPKPVEEADMLLINPTHYAVALYYRSGETPLPMIHCKGEDADALALIE 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   LAR+L+K V     IP      VA +   +   
Sbjct: 300 RAKKAGIPVVQSIWLARTLYK-VKAGKYIPRTTLLTVAHIYKVVRQL 345


>gi|146278644|ref|YP_001168803.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556885|gb|ABP71498.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17025]
          Length = 359

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 172/348 (49%), Gaps = 2/348 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE D  ++K   PS +K+E+A  +G  P S++    +S    L+  L      I  +  
Sbjct: 1   MSEGD--EDKPHEPSQRKLEEARRKGELPKSQDLVTAASYGGLLLAALGLGQGAIQRMGD 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LL  A +            +  L +S    V+P   +  +  + + + QR  V+  
Sbjct: 59  MGTSLLGQADRFSTLLSDKAQPQVGGLLVSVLLTVLPFFAIPALAAVAALVAQRALVVAP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P  +R+S   G +  +  N L  F KS VK++LV  +  + +T +   MLD ++  
Sbjct: 119 TKLAPKTERISPVSGFRNRFGRNGLFEFAKSLVKLLLVAVVFALFITFHMAGMLDMLAMA 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   +   F  + + L +++L    + ++D  W   +   + +MS++E+ DE K + G+P
Sbjct: 179 PGLAVGRMFMLMLEFLAIVVLLSGGIGLIDYFWQRAEHLRRHRMSRKELTDEAKDAEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K +++  A     ++M++    A +++ NPTHYA+ALR+ + +  AP+ VAKG + IA
Sbjct: 239 HVKAQRRQKAMEIATNRMLQDVVGADVVVVNPTHYAVALRWKRGDRRAPLCVAKGTDEIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
            ++R+ A E  +PI  +P  AR+L   V +   I P  YKAVA  I  
Sbjct: 299 ARIRERAAEAGVPIHRDPPTARALHAAVRVGEEIRPEHYKAVAAAIRF 346


>gi|239815246|ref|YP_002944156.1| type III secretion exporter [Variovorax paradoxus S110]
 gi|239801823|gb|ACS18890.1| type III secretion exporter [Variovorax paradoxus S110]
          Length = 365

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 179/354 (50%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D   ++ EA +  K++ A   G A  S +          ++YL +     + S   
Sbjct: 1   MAEQD--LDRNEAATPYKLQRARERGQAAKSTDVVAALVFGVAVVYLTWRGFGAVASQFR 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LL  A +     +  +  L+     SA  L  P     M+  I   ++Q  P+L+ 
Sbjct: 59  FDQALLIHAGRMDPSGVG-LWPLIERALRSALTLAAPFFAAIMLAAIVGNMMQTGPILSF 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             VK  F R++   G+K+++S+  L +  ++ VK+ L+G +  ++L           S +
Sbjct: 118 EPVKMDFTRINPVNGLKKLFSMRVLFDTARAIVKLALLGLVAFLALEALASQFYALASLS 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L      +  V + + L +  + +LD+ ++  ++  K++MS++E+KDE K   G+P
Sbjct: 178 PVGYLRTLLDDLASVGLKMALVLTLIALLDLMYTRREFAKKMRMSQRELKDEAKHREGDP 237

Query: 241 IIKNRQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
            I+ R + + R  ++  + +  T  A ++ITNPTH A+AL+Y      +P L+AKG   +
Sbjct: 238 RIRARLRELRRETLKRSLALRQTRNADMLITNPTHLAVALKYEHGRMASPQLLAKGAGHM 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  MR+IA  H IP+ + P LAR L+K++P++ ++PP  Y  VA++I  ++  +
Sbjct: 298 AAAMREIAARHRIPVVQNPPLARRLYKELPVDHSVPPELYAQVARIIVWVFAMR 351


>gi|110677564|ref|YP_680571.1| flagellar biosynthesis protein FlhB [Roseobacter denitrificans OCh
           114]
 gi|109453680|gb|ABG29885.1| flagellar biosynthetic protein FlhB [Roseobacter denitrificans OCh
           114]
          Length = 362

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 161/349 (46%), Gaps = 1/349 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D   +K+   + +K+ +A  +G    S E    +S    L+ LL F   G+  + S
Sbjct: 1   MSAPDEEADKSFEATPQKLLEARKKGEIARSTELLTAASYAGFLLALLLFGESGLLELGS 60

Query: 61  DLHVLLASATQR-KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            + V++  + Q   L            +  S    ++P  +   +  +      R  V  
Sbjct: 61  TMAVIIGQSAQIAPLFFEGAGTVPARGIIQSTGSALLPIFVYPALAVMLVLFATRGIVFA 120

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
              V+P   ++S+    K  +    L  F+ SF K+I+   I+ + L      M+  +  
Sbjct: 121 PTKVQPKLSKISVISNAKNKFGRTGLFQFVLSFSKLIIYSAILAVFLYHRTNEMVAALQT 180

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P   +        + LI +++  A +  +D  W + +   K KMS++E+ DE K S G+
Sbjct: 181 TPQYTVILLAKICIEFLIYVVIVSAIIGGIDAIWQHFEHLRKNKMSRKEVMDETKNSEGD 240

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P +K  ++  A+S    ++    + A ++I NPTH+A+AL++ +T   APV VAKG +  
Sbjct: 241 PYMKQERRQRAQSLAGTQVAVEVAAADVVIVNPTHFAVALKWDRTPGQAPVCVAKGVDET 300

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           A ++R+IA E+ +PI  +P  AR+L     I   I P  YKAVA  I  
Sbjct: 301 ALRIREIATENAVPIHSDPPAARALHATTNIGDQIAPEHYKAVAAAIRF 349


>gi|76152319|gb|ABA39820.1| HrcU [Erwinia pyrifoliae]
          Length = 360

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMRLPLAR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q     +S +V   + L L A+   +   +  ++  IG + IQ  P+     +KP F 
Sbjct: 63  IGQPFELALSEVVS--SALVLVATFCGLTVAIAALLRIIGGW-IQYGPLFAPEALKPDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  L     + VK   + TI  + LT +  ++      +  S     
Sbjct: 120 RLNPINQFKQMFSVKKLSEMFNNIVKAAAICTIFYLVLTPDLESLARLAYGDLDSFWPAV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + +V    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+P +K  + +
Sbjct: 180 EVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239

Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +         +    A +++ NPTHYA+AL Y       P ++ KG++  AK + 
Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + NIP+     LAR+L++       IP    +AVAQ+ Y++  +
Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345


>gi|188532663|ref|YP_001906460.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|259909721|ref|YP_002650077.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcU protein [Erwinia pyrifoliae Ep1/96]
 gi|188027705|emb|CAO95558.1| HrcU protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|224965343|emb|CAX56875.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcU protein [Erwinia pyrifoliae Ep1/96]
 gi|283479807|emb|CAY75723.1| Type III secretion protein HrcU [Erwinia pyrifoliae DSM 12163]
          Length = 360

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGLVETVLALDDVGMQKLQALMRLPLAR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q     +S +V   + L L A+   +   +  ++  IG + IQ  P+     +KP F 
Sbjct: 63  IGQPFELALSEVVS--SALVLVATFCGLTVAIAALLRIIGGW-IQYGPLFAPEALKPDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  L     + VK   + TI  + LT +  ++      +  S     
Sbjct: 120 RLNPINQFKQMFSVKKLSEMFNNIVKAAAISTIFYLVLTPDLESLARLAYGDLDSFWPAV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + +V    LL +  LT+LD G   + +  + +MS Q+I+DE KQS G+P +K  + +
Sbjct: 180 EVLLTRVSRQTLLTLLVLTLLDFGLQKYFFIKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239

Query: 249 IARSRIRHKMM----EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A   +         +    A +++ NPTHYA+AL Y       P ++ KG++  AK + 
Sbjct: 240 LAHELLNQPAAAVKSKPVEEADLLLVNPTHYAVALYYRPELTPLPRIICKGEDGEAKALI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A + NIP+     LAR+L++       IP    +AVAQ+ Y++  +
Sbjct: 300 ARAQQANIPVIRFIWLARTLYRSQE-GQLIPRHTLQAVAQV-YRVLRQ 345


>gi|119385353|ref|YP_916409.1| flagellar biosynthesis protein FlhB [Paracoccus denitrificans
           PD1222]
 gi|119375120|gb|ABL70713.1| type III secretion exporter [Paracoccus denitrificans PD1222]
          Length = 368

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 155/348 (44%), Gaps = 2/348 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  +  D+K    +  K+  A  EG+ P S E       L      LF     + +   
Sbjct: 1   MS-RENNDDKQFDATESKLRKARQEGDVPRSAELQSALMYLGFWFAALFATIWAVPAWLG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +   +         +   +  L   L+  A  + + G+ +  +  +   + QR  VL  
Sbjct: 60  -MAARVLGGEPWPDAEGRAVADLARALAGQAGLVTVAGVAIMALPILLGMVAQRSVVLTP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P FKRV+  +   + +  + LV F  S  K +LVG             ++   +  
Sbjct: 119 KKLLPDFKRVNPVKNAAQKFGKSGLVTFAISLGKALLVGVGGWFLYASLLAWLMTSGAMR 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +R+ +++ L   A   ++D+ W   ++  + +MS+QE++DE K++ G+P
Sbjct: 179 DLQWVEGLGLILRRAVLLALGIGAIFAIIDLIWKRLEYLKRHRMSRQEMQDEHKENEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K  ++      +   M+    +A +II NPTHYA+AL + +    APV +AKG + +A
Sbjct: 239 HLKAARRQKGVDIVLSAMLADVQKADVIIVNPTHYAVALEWKRGSGRAPVCLAKGVDDVA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++R+ A +H +PI+ +P  AR+L   V I   I    +  VA  I  
Sbjct: 299 RRIRERAQDHRVPIWSDPPCARALHATVEIGQEIKAEHFAPVAAAIRF 346


>gi|1185062|gb|AAB58971.1| flagellar export protein [Borrelia burgdorferi]
          Length = 372

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+ +K + A  EG    S E +   S+L       F  S     + +     
Sbjct: 21  DDEGRTELPTDQKKQKASEEGRVLKSTEINTAVSLLLLFALFFFMLSYFALDLIAVFKEQ 80

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +     +  + F      +    L        +       +IQ    +    ++P
Sbjct: 81  AIKLPEVMRMSVYTMGFAYIRSIMGYVVL---FFFASLAVNFFVNIIQVGFFITFKSLEP 137

Query: 126 SFKRV--SLREGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
            + ++  +     K   +S     N  KS +K++++  I    +  N   +         
Sbjct: 138 RWDKISFNFSRWAKNSFFSAGAFFNLFKSLLKVVIICLIYYFIIENNIGKISKLSEYTLQ 197

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           S +        K+    ++F+A + V D  +   Q+   LKM+K+E+K E K+  G+P++
Sbjct: 198 SGISIVLVIAYKICFFSVMFLAIVGVFDYLFQRSQYIESLKMTKEEVKQERKEMEGDPLL 257

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           ++R K   R  +   +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ IA  
Sbjct: 258 RSRIKERMRVILSTNLRVAIPQADVVITNPEHFAVAIKWDSETMLAPKVLAKGQDEIALT 317

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           ++KIA E+N+P+ E   LAR+L+  V +N  IP  +++ V++++ ++Y
Sbjct: 318 IKKIARENNVPLMENKLLARALYANVKVNEEIPREYWEIVSKILVRVY 365


>gi|323171038|gb|EFZ56687.1| flhB HrpN YscU SpaS family protein [Escherichia coli LT-68]
          Length = 347

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 153/320 (47%), Gaps = 3/320 (0%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             L +S+ A  + +   F P       +  + +    Q ++ +   I   L H  L   +
Sbjct: 1   MGLAASLFAAFVVISSSF-PWYADFVRESFISVHQYAQ-EINNPEVIGQFLRHHLLILGK 58

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            ++  L +     + S L+    +     + P F ++S  +GI R++S  +L    K  V
Sbjct: 59  FILTLLPMPA-AALLSSLVPGGWLFLPKKILPDFSKISPLKGIGRLFSSEHLAETGKMTV 117

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           K ++V  ++ +SL  N+ + L   +      +         V+   ++      ++D+  
Sbjct: 118 KSVVVLVMLWVSLRNNFASFLGLQALPFKLAMNEGLSLYACVMRNFVILFIFFALIDVPL 177

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
           +   +   LKM+KQE+K+E K   G P +K R + + R     ++ +   +A ++ITNPT
Sbjct: 178 AKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVITNPT 237

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
           HYA+AL+Y  +   AP +VAKG + IA  +R++A E+ + + E P LARS++    +N  
Sbjct: 238 HYAVALQYDSSRAAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQ 297

Query: 334 IPPVFYKAVAQLIYKIYHKK 353
           IP   Y+A+A ++  +   K
Sbjct: 298 IPFQLYRAIAHVLTYVLQMK 317


>gi|66044456|ref|YP_234297.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255163|gb|AAY36259.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969107|gb|EGH69173.1| type III secretion protein HrcU [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 359

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 153/347 (44%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSLSFQG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGLSVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  NL+N + S +K I +G  + + +     T++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A+  +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|299069231|emb|CBJ40491.1| Hypersensitivity response secretion protein hrcU, Type III
           secretion exporter [Ralstonia solanacearum CMR15]
          Length = 354

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 158/344 (45%), Gaps = 4/344 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+EDA  +G    S + +  + +L+  + L    S       + L + L
Sbjct: 2   SDEKTEQPTDKKLEDAHRDGETAKSADLTAAAVLLSGCLLLALTASVFGERWRALLDIAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              + R    +  +   + H +L    + +P   +F +    +   Q   VL+   V+  
Sbjct: 62  DVDSSR--HPVMTLKQTIGHFALQLVLMTLPVGFVFALVAWIATWAQTGVVLSFKPVELK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++   G+KRI+S+ ++++ +K  +K + V   +   +      ++     +   I  
Sbjct: 120 MNAINPASGLKRIFSVRSMIDLIKMIIKGVAVAAAVWKLILILMPAIVGAAYQSVMDIAE 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + ++L         L  +D G     +    +MSK E+K E K S G+P IK  +
Sbjct: 180 IGITLLVRLLAAGGGLFLILGAVDFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239

Query: 247 KSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K +AR      K  ++ + A  ++ NPTHYA+A+RY   E   P ++AKG +  A  +R+
Sbjct: 240 KKLARELAEEAKPKQSVAGAQALVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A    IPI   P LARSL++ V +   +P   ++ VA+++  +
Sbjct: 300 EAAALGIPIVGNPPLARSLYR-VDLYGPVPEPLFETVAEVLAWV 342


>gi|203287732|ref|YP_002222747.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
 gi|201084952|gb|ACH94526.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
          Length = 373

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 166/350 (47%), Gaps = 8/350 (2%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
              + +TE P+ ++ + A  EG    S E +   S+        F  S        +L  
Sbjct: 21  SEDEGRTEVPTEQRKQKARREGQVLKSIEINSSISLFILFAVFFFMLSY----FAQELMD 76

Query: 65  LLASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +      +  E +S  ++ L+   +    R V    ++  + G    ++Q   V+ L  +
Sbjct: 77  IFKWQASKLPEVMSISIYSLSFAYIRPLFRYVSIFFIVSFIVGFLVNIMQVGFVMTLKPI 136

Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            P + R++    + +K  + S++   N  KS +KI ++  I  I L  N   +      +
Sbjct: 137 MPKWDRINPNFSKWMKNSFGSVDAFFNLFKSLLKIAIISFIYYIMLKSNIGKISKMPEYS 196

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +        ++    ++ +  L+VLD  +   ++   LKM+K+EIK E K+  G+P
Sbjct: 197 LEGGISVILSLAYRICFFSVMVLMGLSVLDYLFQRARYIENLKMTKEEIKQERKEMEGDP 256

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++++R +   R      +  A  +A ++ITNP H+A+A+++      AP ++AKGQ+ I 
Sbjct: 257 LLRSRMRERMREISNVNLRVAVPQADVVITNPEHFAVAIKWDSNTMLAPKVLAKGQDEIV 316

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             +++IA E+N+ I E   LAR L+  V IN  IP  +++ V++++ K+Y
Sbjct: 317 FVIKQIARENNVSIVENKPLARDLYANVDINEEIPREYWEIVSKILVKVY 366


>gi|299066525|emb|CBJ37715.1| Flagellar biosynthetic protein flhB [Ralstonia solanacearum CMR15]
          Length = 363

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 179/354 (50%), Gaps = 4/354 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    K++  +  K++ A  +G    SR+A    +    +++L          V  
Sbjct: 1   MADQDMD--KSQPATPYKLQKAREKGQVAKSRDAISAVTFTVAMVFLASQGWDTWRRVFQ 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               LLA A      + + +  L+  L  +   L IP LL  ++  +   L+Q  P+ + 
Sbjct: 59  INRALLAHAGNVDATEPA-MWHLIDQLVRAVLGLGIPFLLALLLAAVAGNLLQTGPIFSF 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP + R +  +G KR++S+  L +  ++ +K+IL+G +   SL           S  
Sbjct: 118 EPIKPEWSRANPVQGFKRLFSLRTLFDGARALLKLILLGLVAYFSLKSLTPQFYHLASLP 177

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +      +  + + +   +  + +LD+ ++  ++  K++MS +E+KDE K   G+P
Sbjct: 178 ASGFVRTLLDDLASLGLKMSAMLMFIALLDLIYTRREFSKKMRMSHKELKDEFKHREGDP 237

Query: 241 IIKNRQKSIARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
            I++R + +    ++  + +  T  A ++ITNPTH A+ALRY+  E ++P LVAKG   +
Sbjct: 238 RIRSRLRKLRHEMLKRSRSVSKTRDADVLITNPTHVAVALRYVHGEMESPQLVAKGAGAL 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  MRKIA +H IP+ +  +LAR+LF  + ++ ++ P  Y  VA++I  ++  +
Sbjct: 298 AAVMRKIAAKHQIPVIQNRALARALFHSLEVDRSVQPALYADVARIIVWVFAMR 351


>gi|109947223|ref|YP_664451.1| flagellar biosynthesis protein FlhB [Helicobacter acinonychis str.
           Sheeba]
 gi|109714444|emb|CAJ99452.1| flagella-associated protein [Helicobacter acinonychis str. Sheeba]
          Length = 358

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ +M    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSRESVQELFNQLAKDTFLLILPILIILVMVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P   +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KAIEPKLSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  G+P
Sbjct: 175 LKDQLLWFKNKALLLISSLLFLFFILAFIDLIIKRRQYTNSLKMTKQEVKDEYKQQEGSP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + +        +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EVKAKIRQTMMRNAANKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDHLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA E++I I E  +LAR L++ V +N+AIP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREYDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIVFAQVAKLE 346


>gi|289678002|ref|ZP_06498892.1| type III secretion protein HrcU [Pseudomonas syringae pv. syringae
           FF5]
          Length = 359

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 153/347 (44%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGFTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  NL+N + S +K I +G  + + +     T++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A+  +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|116626501|ref|YP_828657.1| type III secretion exporter [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229663|gb|ABJ88372.1| type III secretion exporter [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 354

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 160/352 (45%), Gaps = 5/352 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ +++E A  EG  P ++E       +  L  L    +     +  
Sbjct: 1   MADKSG---KTEQPTQRRLEKARTEGQFPAAKEFVSALQFMVFLGLLGSGGAGWFKQLRQ 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               L   A   +L     ++ ++  +       ++   +   +  +   L      ++ 
Sbjct: 58  TTRSLFGLAFAPELR-PEDLIHVMWQIFQQLLLPLVMAGVAVAVATVAFRLATTRFGISF 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R +    +K +     L    ++   + +    + +   E     +     +
Sbjct: 117 KKLMPDAARFNPLSRLKDL-PKQTLPALAQAAFLLPVFLWAVWVVGQEKLDAFMALPMQS 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             S +     ++ ++          +  +D+     +  S+L+MSKQEI++E+K   GNP
Sbjct: 176 VESGMNLICASLMELFWKAAGVFLLVGCVDLARQLQRHKSELRMSKQEIREEMKDVEGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K R + + R R+R +MM+    AT ++ NPTHYA+A+RY      AP++VAKG N +A
Sbjct: 236 QMKARIRRLQRDRVRKQMMKDVPTATAVVVNPTHYAVAIRYQMDGMAAPMVVAKGMNHLA 295

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            ++R+ A EH +PI E P LA++L+K V +   IPP  Y+AVA+++  I+  
Sbjct: 296 LRIRQKATEHQVPIIENPPLAQALYKSVEVGQEIPPHLYRAVAEILAYIFKL 347


>gi|167820512|ref|ZP_02452192.1| type III secretion system protein [Burkholderia pseudomallei 91]
          Length = 427

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 81  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 138

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 139 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 198

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 199 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 258

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 259 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 318

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 319 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 378

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 379 PSVARALYR-VERDASIPEELFETVAAILRWV 409


>gi|167850345|ref|ZP_02475853.1| type III secretion system protein [Burkholderia pseudomallei B7210]
          Length = 420

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRYAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|330950827|gb|EGH51087.1| type III secretion protein HrcU [Pseudomonas syringae Cit 7]
          Length = 359

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 152/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSMSFQG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGFSVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  NL+N + S +K I +G  + + +     T+    +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLAVLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A+  +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LAQEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|330957485|gb|EGH57745.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 359

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 149/347 (42%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLSLADDSVNRLEALLTLSFQG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  +      + LS +   +    + M+  +    +Q   +     +K    
Sbjct: 63  IDRTFAASVELVASEGLSVLLSFTLCSV---GIAMLMRLIGSWVQIGFLFAPKALKVDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  NL+N + S +K + +G  +   +      ++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSILKAVAIGATLYTQVKPALGALILLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VDLFRHILRVILGLLLVIAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LAHEILNQEPSAAPKPVEDADMLLVNPTHYAVALYYRAGETPLPLIHCKGEDEEALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|226198428|ref|ZP_03793996.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929485|gb|EEH25504.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
          Length = 420

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|254499123|ref|ZP_05111813.1| putative flagellar biosynthetic protein FlhB [Legionella
           drancourtii LLAP12]
 gi|254351662|gb|EET10507.1| putative flagellar biosynthetic protein FlhB [Legionella
           drancourtii LLAP12]
          Length = 361

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 165/346 (47%), Gaps = 2/346 (0%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  +  K++ A  +G    S E +   S+L  L  +   +   ++ +   L  +L  
Sbjct: 13  EKTEKATPYKLQKAKEKGQVSKSAELTTCISLLVLLGMMSALWPKQLHEIQEMLRHILYL 72

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A Q +   + +I  L   + +      +P  L  ++  I + L Q   V +   + P FK
Sbjct: 73  AAQMQFS-LDNINHLHQFILMQLLHQWLPFALAGVLAIILANLTQSGIVWSTTPLVPDFK 131

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R+++ +G K+++SI       KS +K++     +  +       +L              
Sbjct: 132 RLNIVQGFKKLFSIKTCFEAAKSTLKLMSTFIFLFFAFKHQLTNILPLALTPTAQHPGLM 191

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  ++  +LL ++ L VLD  ++  ++    +MSKQE+KDE KQ  G+P IK++ K 
Sbjct: 192 MHFLLSLIFQLLLLLSLLAVLDKFYTRWKFAKDQRMSKQEVKDEYKQREGDPKIKSKIKQ 251

Query: 249 IARSRIRH-KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
           + +   +    ++    A +IITNPTH A+AL+Y +T   AP +V K Q  +  +++++A
Sbjct: 252 LQQQLRQKTASLKQVKTADVIITNPTHLAIALKYDRTSMPAPKVVCKAQGEMVSQVKELA 311

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +H +PI E  S AR L+  V +N  I    Y   A +  +IY ++
Sbjct: 312 RKHGVPIIENKSFARLLYHSVELNQWINKELYPFAAAIFKEIYARR 357


>gi|332673425|gb|AEE70242.1| flagellar biosynthetic protein FlhB [Helicobacter pylori 83]
          Length = 358

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|217033738|ref|ZP_03439164.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10]
 gi|216943787|gb|EEC23227.1| hypothetical protein HP9810_7g19 [Helicobacter pylori 98-10]
 gi|317178869|dbj|BAJ56657.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F30]
          Length = 358

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|317180535|dbj|BAJ58321.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F32]
          Length = 358

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|317177398|dbj|BAJ55187.1| flagellar biosynthesis protein FlhB [Helicobacter pylori F16]
          Length = 358

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLLGIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               ++   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G+K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFVLAFIDLTIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|76819722|ref|YP_335839.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1710b]
 gi|76584195|gb|ABA53669.1| type III secretion inner membrane protein [Burkholderia
           pseudomallei 1710b]
          Length = 399

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 53  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 110

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA   ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 111 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 170

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 171 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 230

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 231 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 290

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 291 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 350

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 351 PSVARALYR-VERDASIPEELFETVAAILRWV 381


>gi|308063444|gb|ADO05331.1| flagellar biosynthesis protein FlhB [Helicobacter pylori Sat464]
          Length = 358

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E   F  +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGFLGLLAGLLSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                +   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHAVKDFSLD--FSKESVQKLFNQLAKDTFLLLLPVLIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   G K ++S+  L++     +K+ L   +     +     +      N
Sbjct: 115 KVIEPKFSKINPINGTKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLN 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L         ++  +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP
Sbjct: 175 LQGQLLWFKSKALLLISSLLFLFFILAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            IK + + +      +KMM+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A
Sbjct: 235 EIKAKIRQMMIKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH+I I E  +LAR L++ V +N+ IP   ++AVA +  ++   +
Sbjct: 294 IRIKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLE 346


>gi|167898942|ref|ZP_02486343.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|167907272|ref|ZP_02494477.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 399

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 53  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 110

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 111 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 170

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 171 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 230

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 231 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 290

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 291 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 350

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 351 PSVARALYR-VERDASIPEELFETVAAILRWV 381


>gi|126445400|ref|YP_001063276.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           668]
 gi|237510110|ref|ZP_04522825.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254186950|ref|ZP_04893466.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254301368|ref|ZP_04968812.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|126224891|gb|ABN88396.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 668]
 gi|157810968|gb|EDO88138.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|157934634|gb|EDO90304.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|235002315|gb|EEP51739.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 420

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|254263389|ref|ZP_04954254.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
 gi|254214391|gb|EET03776.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
          Length = 420

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA   ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|254185079|ref|ZP_04891668.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|184215671|gb|EDU12652.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
          Length = 420

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRSER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|167743331|ref|ZP_02416105.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|254194002|ref|ZP_04900434.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|169650753|gb|EDS83446.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
          Length = 420

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|237751072|ref|ZP_04581552.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879]
 gi|229373517|gb|EEO23908.1| flagellar biosynthesis protein FlhB [Helicobacter bilis ATCC 43879]
          Length = 372

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 6/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KT APS +KI+ A  EG+   S +      +    + LLF   P    +  
Sbjct: 1   MAE----EEKTHAPSQRKIQKAREEGSVAKSPDLVGLVGL-VVGLMLLFIIFPFWVKIFK 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L+V           ++  I  +   +   A+   +P     M+ GI   + Q   +L+ 
Sbjct: 56  GLYVECTKLFLVDF-NMHTIFAITLTILKVAALCAMPFFFALMVAGIIGNVAQFGFLLSF 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP   +++  +G K ++S+  L++     +K+ +   +           + +   + 
Sbjct: 115 KIIKPKVDKINPIKGAKNLFSLKKLLDGFIITLKVFIAFAVGFFIFVGFLDEVANISMSP 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L   +     ++  +L     + +LD     +Q+   L+MSKQE+KDE KQ  GN 
Sbjct: 175 LKEQLTWFYQKALILIGALLFLFLVMGILDFLIKRYQYIKSLRMSKQELKDEFKQQEGNQ 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K + + I      +KMM A   A +++TNPTHYA+ALR+      APV+VAKG + +A
Sbjct: 235 EVKAKIRQIMMKNAMNKMMSAIPSANVVVTNPTHYAVALRFNSETESAPVVVAKGIDHLA 294

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            +++ IA EH I I E P LAR L++ V ++  IP   ++AV +L  ++   +
Sbjct: 295 VRIKGIAREHEILIIENPPLARELYRLVDVDRMIPGEMFEAVVELFQQVAKLE 347


>gi|126458610|ref|YP_001076232.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           1106a]
 gi|242311362|ref|ZP_04810379.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|126232378|gb|ABN95791.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106a]
 gi|242134601|gb|EES21004.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
          Length = 420

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA   ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|168785695|ref|ZP_02810702.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|261226164|ref|ZP_05940445.1| putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256582|ref|ZP_05949115.1| putative integral membrane protein-component of type III secretion
           apparatus [Escherichia coli O157:H7 str. FRIK966]
 gi|189374061|gb|EDU92477.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
          Length = 373

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 149/326 (45%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +     SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKEQILKSRDLTVSVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  ++    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A 
Sbjct: 235 RHQEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           E  IPI  +  LAR ++        +
Sbjct: 295 EIGIPIITDKKLARKIYATHRRYDYV 320


>gi|271500418|ref|YP_003333443.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii
           Ech586]
 gi|270343973|gb|ACZ76738.1| type III secretion protein, YscU/HrpY family [Dickeya dadantii
           Ech586]
          Length = 359

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 162/348 (46%), Gaps = 9/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+SKK++DA  +G    S++        A L  +L     G+  + + + + L+ 
Sbjct: 3   EKTEKPTSKKLQDARKKGEVGQSQDVPKLLISFALLEMILALTDNGMSKLQALMQLPLSR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   +     +    +      S   +  + + ++  I    IQ  P+  +  +K  F 
Sbjct: 63  LSDPFVHAADEV---FSEALSLLSTFCLLTISVALLMRIVGGWIQYGPLFAVEALKIDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++    IK+++++  L + + S +K   +G +  + +      +++    +  +     
Sbjct: 120 RLNPVNQIKQMFTMRKLTDMLTSILKATTIGLVFWLVVIPQLEWLVELAYGDLTAFWKGV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ V    L  +  L +LD G   + +  + +MS ++I++E K S G+P +K  +KS
Sbjct: 180 ESVLKSVARTTLSSLLALAILDFGLQKYYFLKQQRMSHEDIRNEFKNSEGDPHMKGHRKS 239

Query: 249 IARSRIRH----KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A+  +      +       A +++ NPTHYA+AL Y   +   P ++ KG++  AK + 
Sbjct: 240 VAQEILNEPASPRAKPNIEDADLLLVNPTHYAVALFYRPGKTPLPRILLKGEDEQAKALI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             A   N+P+     LAR+L++ VP    IP    ++VAQ+ Y++  +
Sbjct: 300 ARAQHANVPVIRFIWLARTLYR-VPEGHYIPRHTLQSVAQV-YRVLRQ 345


>gi|167915634|ref|ZP_02502725.1| type III secretion system protein [Burkholderia pseudomallei 112]
          Length = 396

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 50  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 107

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 108 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 167

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 168 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 227

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 228 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 287

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 288 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 347

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 348 PSVARALYR-VERDASIPEELFETVAAILRWV 378


>gi|818894|gb|AAB05078.1| HrpY [Pseudomonas syringae pv. syringae]
 gi|148562543|gb|ABQ88362.1| HrcU [Pseudomonas syringae pv. syringae]
          Length = 359

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 152/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVNRLEALLSLSFQG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGFSVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  NL+N + S +K I +G  + + +     T+    +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLAVLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A+  +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LAQEILNQEPSAAPKPLEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|167724367|ref|ZP_02407603.1| type III secretion system protein [Burkholderia pseudomallei DM98]
          Length = 360

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 14  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 72  ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 192 VSVVVAVLAAADYKIARVMFIRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342


>gi|134281989|ref|ZP_01768695.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|134246518|gb|EBA46606.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
          Length = 420

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 159/332 (47%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++   +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLATAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|217422649|ref|ZP_03454152.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|217394880|gb|EEC34899.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
          Length = 420

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|238563893|ref|ZP_00438080.2| type III secretion inner membrane protein [Burkholderia mallei GB8
           horse 4]
 gi|254176635|ref|ZP_04883293.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
           10399]
 gi|254201086|ref|ZP_04907451.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           FMH]
 gi|254205051|ref|ZP_04911404.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           JHU]
 gi|147748698|gb|EDK55773.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           FMH]
 gi|147754637|gb|EDK61701.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           JHU]
 gi|160697677|gb|EDP87647.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
           10399]
 gi|238519734|gb|EEP83202.1| type III secretion inner membrane protein [Burkholderia mallei GB8
           horse 4]
          Length = 420

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|167923476|ref|ZP_02510567.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 360

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 14  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 72  ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342


>gi|167828885|ref|ZP_02460356.1| type III secretion system protein [Burkholderia pseudomallei 9]
          Length = 360

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 14  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 72  ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342


>gi|255026794|ref|ZP_05298780.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J2-003]
          Length = 324

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 165/318 (51%), Gaps = 5/318 (1%)

Query: 29  PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
             S+E +   S+L     L FF    I +       LL    +    +   + +L+    
Sbjct: 1   AKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVALLKQPPKLANMESYSLFYLM---- 56

Query: 89  LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
               ++++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V  
Sbjct: 57  -EFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEV 115

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           +K+ + I L+  +  I   ++  T++ +   N    L   F   +   + + L IA + +
Sbjct: 116 VKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGL 175

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
           LD  +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT +
Sbjct: 176 LDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFV 235

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + NPTH ++ +RY +T++ AP L+ KG++ +A  +R++A    +P+     LARS++   
Sbjct: 236 VNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTT 295

Query: 329 PINSAIPPVFYKAVAQLI 346
             +  I    YK V +++
Sbjct: 296 NPDEYIQEDLYKDVIEVM 313


>gi|117928068|ref|YP_872619.1| type III secretion exporter [Acidothermus cellulolyticus 11B]
 gi|117648531|gb|ABK52633.1| type III secretion exporter [Acidothermus cellulolyticus 11B]
          Length = 391

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 158/353 (44%), Gaps = 7/353 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++      KTE P+ +K+++A  EG    S E   +  +L  +  +    +    +   
Sbjct: 1   MADRS---QKTEKPTQRKLKEARREGRVARSPEVGAWLGLLVGIFLVHLTMTRTTAAFRQ 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  L       +  D +  V +L     S +    P     ++  +G+ + Q    L+ 
Sbjct: 58  AIDGLTQ---VIRTPDPNLAVHVLGTSLASGAVAAAPLAGAILLTALGASVAQGGLRLSA 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P ++ ++   G KR++         K+  K  L+  I+  ++              
Sbjct: 115 KALAPKWQSLNPLNGWKRMFGPRGGWEAAKALAKTGLLALILYDTMRGLVPLTTTGTVTP 174

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +++ A   V +      +    L  LD  +   +  + L+M+K E+K+E++ + G+P
Sbjct: 175 LQGVVHTAGSAVLRFARDAAVAGLLLAFLDYAYQLRRHRASLRMTKHEVKEELRTTEGDP 234

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I++  +    +  R +M+   + A +++ NPTH A+ALRY    + AP +VAKG   +A
Sbjct: 235 RIRSAIRVRQMALRRRRMIRDVATADVVVVNPTHIAVALRYTPG-SGAPTIVAKGAGAVA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R  A  H +P+ E+  LAR+L++   +   IP   + AVA+++  ++  K
Sbjct: 294 ARIRDEAIRHRVPLVEDIPLARALYRICDVGQEIPRELFVAVARVLAFVFSLK 346


>gi|320107036|ref|YP_004182626.1| type III secretion exporter [Terriglobus saanensis SP1PR4]
 gi|319925557|gb|ADV82632.1| type III secretion exporter [Terriglobus saanensis SP1PR4]
          Length = 373

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 25/362 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE+     ++E  S ++ + + ++G    SRE +   +++A ++ L             
Sbjct: 1   MSED-----RSEKASEQRKKKSRDKGEGVRSRELNAAFAMMAGILVLG--------GSAR 47

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMF-------GIGSYLIQ 113
               L A+A +  L  + H  +    L  +A  L++P L    +         + S ++Q
Sbjct: 48  RFVPLWATAYREMLSALGHTEWTPESLLDAARILILPTLGPVALVMGAAFCGALLSGMVQ 107

Query: 114 RIPV-LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFT 172
              +  +   +     R++    +K+I S   LV   KS V   +V  +    L      
Sbjct: 108 SGGLQFHAEALAIKTTRLNPWSNLKQIASARALVRVSKSLVPAGIVLALGISCLHGVMDP 167

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           M    +    +    AF     +L+     +      D    +  W  +LKMSKQE++ E
Sbjct: 168 MAVLSNFRLMT----AFSASYALLLNAAWLMVAWAGFDYVMEWRSWNQRLKMSKQELRQE 223

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            K++ G+P +K R + I R+  + +     SRAT++I NPTH+A+AL +       P ++
Sbjct: 224 HKEAAGDPQVKGRIRQIQRAMRKRRAKVDVSRATVVIVNPTHFAVALEFSFETMQPPRVL 283

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG++L A ++R+ A    +PI E P LARSL++ V + + IP   Y AVA ++  +Y +
Sbjct: 284 AKGRDLHAHEIREEAMWAGVPIVENPLLARSLYRSVKVGNTIPFELYAAVAGILAFLYRQ 343

Query: 353 KI 354
           ++
Sbjct: 344 EV 345


>gi|14588842|emb|CAA68101.2| HrcU protein [Pantoea agglomerans]
          Length = 360

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 8/341 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++DA  +G  P S++          +  +L     G+  + + + + LA 
Sbjct: 3   EKTEKPTEKKLQDARRKGQVPQSQDVPKLLICAGVVETVLALDDVGMQKLQALMMLPLAR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q   + ++ +        L  +      + +  +  I    IQ   ++    +KP F 
Sbjct: 63  LNQPFEQAVNEVA---GSALLLVTTFFGITVAVAALLRIIGGWIQYGLLIAPETIKPDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     K+++S+  L + + + +K   + TI  + L  +   +      +  S     
Sbjct: 120 RLNPMNQFKQMFSVKKLTDMLNNILKAAAICTIFYLVLNPDLDALSRLAYGDLDSFWPAV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + +V    LL +  LT+LD G   + +  + +MS  +I+DE KQS G+P +K  + +
Sbjct: 180 EVMLTRVSRQTLLTLLILTLLDFGLQKYFFLKQQRMSHHDIRDEYKQSEGDPHMKGHRHA 239

Query: 249 IARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A+  +         E   +A +++ NPTHYA+AL Y       P +V KG++  AK + 
Sbjct: 240 VAQELLNAPASPVKREPLEKADLLLVNPTHYAVALYYRPALTPLPRIVCKGEDNEAKTLI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
             A + NIP+     LAR+L++       IP    +AVAQ+
Sbjct: 300 ARAQKANIPVIRFVWLARTLYRS-EEGQLIPRHTLQAVAQV 339


>gi|254254348|ref|ZP_04947665.1| Type III secretory pathway component EscU [Burkholderia dolosa
           AUO158]
 gi|124898993|gb|EAY70836.1| Type III secretory pathway component EscU [Burkholderia dolosa
           AUO158]
          Length = 343

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 155/340 (45%), Gaps = 4/340 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + P++K++ DA  +G+ P S E    +  +   + L          + +   +   +
Sbjct: 3   EKNQQPTAKRLRDAREKGDVPKSAETISSAFFVGVCVALAVGIGTLFARLQALFRLAFDA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 +  + I  L+   +   + L    +   ++ G+ +  +Q   V+  + + P   
Sbjct: 63  IG--AADPSARIAVLIDGAARDWAMLSAQIVAAGLLAGVLAGFVQVGGVMAWSRLVPQLS 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      P SIL   
Sbjct: 121 RLNPAEGLKNMWSMRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +     L    + ++DI    H++  K+KMS +E++ E K+  G+P ++ +++ 
Sbjct: 181 VKLLMLLFGWAALIYIVMALIDIVHQRHEFNRKMKMSIEEVRREYKEDEGDPHVQAKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A+++ ++A 
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYYG-GIGTLPWVLARGEGDAAERIVRLAR 298

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +   P      LA++L+   P N  I P  ++ VAQL+  
Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338


>gi|53722644|ref|YP_111629.1| type III secretion system protein HrcU [Burkholderia pseudomallei
           K96243]
 gi|52213058|emb|CAH39096.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
          Length = 360

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 14  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 72  ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342


>gi|53716421|ref|YP_106206.1| type III secretion system protein HrcU [Burkholderia mallei ATCC
           23344]
 gi|52422391|gb|AAU45961.1| type III secretion inner membrane protein [Burkholderia mallei ATCC
           23344]
          Length = 360

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 14  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 71

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 72  ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 131

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 132 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 191

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 192 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 251

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 252 PRQRVGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 311

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 312 PSVARALYR-VERDASIPEELFETVAAILRWV 342


>gi|326794359|ref|YP_004312179.1| type III secretion protein, YscU/HrpY family [Marinomonas
           mediterranea MMB-1]
 gi|326545123|gb|ADZ90343.1| type III secretion protein, YscU/HrpY family [Marinomonas
           mediterranea MMB-1]
          Length = 368

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 148/343 (43%), Gaps = 10/343 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + KKI+D+  +G    S++      +   L  +L     G+ ++     + L+ 
Sbjct: 3   EKTEKATPKKIKDSRKKGQVGQSQDIHKLMILGVLLEVVLGMVDSGVRNLEKLTSIPLSM 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q     +   V    +    A+ +V+  L + ++F +    +Q   ++    +K  F 
Sbjct: 63  INQPFQYALQATV---VNCLTIAASMVMMALGIAVLFRLLGGWLQFGFLIAPEALKIDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++    +K ++S   L     SF+K I +G ++   LT    ++      +  +     
Sbjct: 120 RLNPFSQLKNMFSGKKLFELFNSFIKAITIGVVMYFILTPILPSLGKLALTDLDTTWRGI 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                KV    +  +  +  +D G   +  +  LKMSK ++K E K   G+P +K ++KS
Sbjct: 180 AELFLKVERACVGVLIVIASIDFGMQKYFHFKSLKMSKDDVKQEYKNQEGDPHLKGQRKS 239

Query: 249 IARSRIRHKMMEA------TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
            A      +   A         A  ++ NPTH+A+AL Y   E   P ++ KGQ+  A  
Sbjct: 240 EAVRLATEEPSPAPSAKPELGEADTLVVNPTHFAVALYYRSEETPLPKILTKGQDQDALD 299

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           + + A E  IP+     LAR+L+K+      IP    + VA++
Sbjct: 300 LIEQAKEKGIPVIRFIWLARTLYKEQE-GHYIPRTTLRYVAKI 341


>gi|115377814|ref|ZP_01465002.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365146|gb|EAU64193.1| flagellar biosynthetic protein [Stigmatella aurantiaca DW4/3-1]
          Length = 269

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 131/263 (49%), Gaps = 1/263 (0%)

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
              L  P +    +       +Q   +  ++ + P  ++++  +GIK I+S   +V  +K
Sbjct: 1   MLFLTAPIVAGGAVIAGLVEFLQVGALFTMDPLIPKLEKLNPIQGIKNIFSKKTVVEMIK 60

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           + VKI +   ++   + +    ++  +  +   +L      V +V   + L     ++ D
Sbjct: 61  NLVKISVAAYVVFGVVRDMLDMLVQTVRMDTSGLLAVMGEMVYRVCTRVALVFLLFSIFD 120

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
           I W    +  ++ MSK ++K E K+S G+P  K  +K + +  +    MEA   A +I+T
Sbjct: 121 IWWQRKAFMKEMMMSKDDVKKEYKESEGDPHHKAHRKQMHQEIMEGAQMEAVKDADVIVT 180

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NP H A+AL+Y + ++ AP ++AKG +  A++++ IA E ++P      LA +L + V +
Sbjct: 181 NPDHVAVALQYDRDKDAAPRVLAKGIDFKAERIKAIARESDVPTLRNVPLAHALLR-VDV 239

Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
              IP   Y AVA+++  +Y  K
Sbjct: 240 GQDIPEELYDAVAEVLNFVYGLK 262


>gi|302185355|ref|ZP_07262028.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           syringae 642]
 gi|256259405|gb|ACU65042.1| HrcU [Pseudomonas syringae pv. syringae]
          Length = 362

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 149/347 (42%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K +  + K+I DA   G    S++      ++      L      +  + S + + +  
Sbjct: 3   EKNQDATPKQIRDARKRGQVAQSQDLPKLLILVVVSEITLGMADVSMEKLQSLIKLSMTR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q  L  +  +V     L  + + L +    + M+  +    +Q   +     +KPS +
Sbjct: 63  MDQPFLRTVGEVVTQGVWLVAAFAVLSV---GVAMLMRLLGSWMQFGVLFAPEALKPSME 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++    +K+++++ +L   +   +K  ++  ++ + +     T++  + ++  +  +  
Sbjct: 120 KLNPFSHLKQMFTLRSLTTSLSGIIKAAIIAVVMWMIVEPALGTLVSLVHSDLVTFWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                ++L +    +  L V D     +    +L+MS ++IK E K S GNP IK  ++ 
Sbjct: 180 SKLFHQILRVTCGILLVLAVADFAIQKYFHAKQLRMSMEDIKQEYKNSEGNPEIKGHRRQ 239

Query: 249 IARSR---IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A            +    A ++I NPTHYA+AL Y   E   P +  K  +  A  + +
Sbjct: 240 LAHELLNQAPKAPPKPVKDADVLIVNPTHYAVALYYRPGETALPRIHCKNIDAGALALIE 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A    IP+ +   LAR+L++ VP +  IP    +AVAQ+   I   
Sbjct: 300 EAKRERIPVVQCIWLARTLYR-VPQDRFIPRDTLQAVAQIYGVIKQL 345


>gi|221200564|ref|ZP_03573606.1| bcscU [Burkholderia multivorans CGD2M]
 gi|221209221|ref|ZP_03582212.1| bcscU [Burkholderia multivorans CGD2]
 gi|221170911|gb|EEE03367.1| bcscU [Burkholderia multivorans CGD2]
 gi|221179905|gb|EEE12310.1| bcscU [Burkholderia multivorans CGD2M]
          Length = 343

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 154/340 (45%), Gaps = 4/340 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + P++K++ +A  +G+ P S E    +  +   + L          + +   ++  +
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A     +  + I  L+   +   + L    +   ++ G+ +  +Q   V+  + + P   
Sbjct: 63  AG--AADPSARIATLIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      P SIL   
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P I  +++ 
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A+++ ++A 
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYYG-GIGTLPWVLARGEGDAAERIVRLAR 298

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
               P      LA++L+   P N  I P  ++ VAQL+  
Sbjct: 299 NALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338


>gi|124382486|ref|YP_001025750.1| type III secretion system protein HrcU [Burkholderia mallei NCTC
           10229]
 gi|126446560|ref|YP_001077835.1| type III secretion system protein HrcU [Burkholderia mallei NCTC
           10247]
 gi|254359173|ref|ZP_04975445.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           2002721280]
 gi|126239414|gb|ABO02526.1| type III secretion inner membrane protein [Burkholderia mallei NCTC
           10247]
 gi|148028360|gb|EDK86320.1| type III secretion protein, YscU/HrpY family [Burkholderia mallei
           2002721280]
 gi|261826829|gb|ABM98869.2| type III secretion inner membrane protein [Burkholderia mallei NCTC
           10229]
          Length = 420

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++    +G    S++ +   ++ A +  L    S     ++  +   L      +     
Sbjct: 74  LKKVREKGQVAKSKDIADAMTLAAAIGVLTACESMLTGGLSRAVRTALDFVRGER--TPQ 131

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ GI S   Q   ++ L  V P F  ++   GIKR
Sbjct: 132 ATLAALHDLAASAALTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFDAINPMAGIKR 191

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK +++  +    +T  +  ++  +      +    +  + K+L  
Sbjct: 192 IFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGT 251

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + + +A L   D   +   +  + +M+K+E+K E K+S G+P  K  ++ +AR       
Sbjct: 252 VSVVVAVLAAADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAP 311

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 312 PRQRGGQANVLVVNPTHYAVAIRYAPHEHPLPRVIEKAVDDGALALRRHAHALGVPIVGN 371

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  +++IP   ++ VA ++  +
Sbjct: 372 PSVARALYR-VERDASIPEELFETVAAILRWV 402


>gi|161520299|ref|YP_001583726.1| type III secretion exporter [Burkholderia multivorans ATCC 17616]
 gi|189353522|ref|YP_001949149.1| flagellar biosynthesis pathway component [Burkholderia multivorans
           ATCC 17616]
 gi|160344349|gb|ABX17434.1| type III secretion exporter [Burkholderia multivorans ATCC 17616]
 gi|189337544|dbj|BAG46613.1| flagellar biosynthesis pathway component [Burkholderia multivorans
           ATCC 17616]
          Length = 343

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 154/340 (45%), Gaps = 4/340 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + P++K++ +A  +G+ P S E    +  +   + L          + +   ++  +
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A     +  + I  L+   +   + L    +   ++ G+ +  +Q   V+  + + P   
Sbjct: 63  AG--AADPSARIATLIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      P S L   
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDPSVQSGFTRPMSTLALI 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P I  +++ 
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A+++ ++A 
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALYYG-GIGTLPWVLARGEGDAAERIVRLAR 298

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +   P      LA++L+   P N  I P  ++ VAQL+  
Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338


>gi|330819403|ref|YP_004348265.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
           gladioli BSR3]
 gi|327371398|gb|AEA62753.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
           gladioli BSR3]
          Length = 359

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 4/343 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G    S + +   S+   + +++   +    S+   +   L
Sbjct: 2   SDEKTEEPTDKKLRDARKDGQVSKSSDLADAISMTVAIGFVMAAGAHLRDSMRQLVMSAL 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
              T      I  +   L      A   V+P  L   M G+    +Q    + L  V P+
Sbjct: 62  DFVTTE--HSIPDMFDRLYRFGGIALLAVVPLALAAAMAGLMGSAMQVGLQIALKPVMPN 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG+K+I+SI  ++   K  VK  L+  ++ + +   +  +   I      +  
Sbjct: 120 LNSLNPGEGLKKIFSIKTVIETAKMIVKAALIFAVMWVVIRGLFPLVSGSIYQPLAELSA 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  + K++++  +    +   D+      +  ++KMSK E+K E K   G+P+IK  +
Sbjct: 180 MYWGILVKLMMIAAVIFIVVGAGDVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKGER 239

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K IAR           +RA +++ NPTHYA+ALRY   E+  PV++AKG +  A  +R+ 
Sbjct: 240 KRIAREMANSPP-PRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIRRA 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A E  +PI   P +AR+L+K V ++  IP V ++ +A ++  +
Sbjct: 299 AAEAEVPIVGNPPVARALYK-VGVDEPIPEVLFETIAAILRWV 340


>gi|28868600|ref|NP_791219.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968267|ref|ZP_03396411.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           T1]
 gi|301381804|ref|ZP_07230222.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061995|ref|ZP_07253536.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           K40]
 gi|302135077|ref|ZP_07261067.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851838|gb|AAO54914.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926905|gb|EEB60456.1| type III secretion protein HrcU [Pseudomonas syringae pv. tomato
           T1]
 gi|330963058|gb|EGH63318.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015106|gb|EGH95162.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 359

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 155/348 (44%), Gaps = 7/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      +LA     L   +  +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLANESVNRLQALLALTFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +   S +  + +          +  + L M+  + S  +Q   +     +K   K
Sbjct: 63  IERPFM---SAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFLFAPKALKLDIK 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++      K+++S  N++N + S +K + +G  +   +     T++   +++  + L+  
Sbjct: 120 KIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLATYLHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               + VL +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 IELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +  IP+ +   LAR+L+K V +   IP     AV  +   +   +
Sbjct: 300 QAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 346


>gi|238023710|ref|YP_002907942.1| type III secretion system protein HrcU [Burkholderia glumae BGR1]
 gi|237878375|gb|ACR30707.1| Type III secretion protein, YscU/HrpY family protein [Burkholderia
           glumae BGR1]
          Length = 352

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 166/345 (48%), Gaps = 8/345 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ KK+ DA  +G A  S + +   S+ A + +++   +     +   +  L+
Sbjct: 2   SDEKTEEPTDKKLRDARKDGQASKSSDLADAISMTAAIGFVIAASA----HLRDSMRQLV 57

Query: 67  ASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            SA      D  +  +   L      A   V+P  L   + G+    +Q    + L  V 
Sbjct: 58  VSALDFVSTDHSLPDMFDRLYRFGGIALLAVVPLALAAALAGVMGSAMQVGLQIALKPVM 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P+   ++  EG+K+I+S+  ++  +K  VK  L+  ++ + +      +   I      +
Sbjct: 118 PNLNALNPGEGLKKIFSMKTVIETVKMLVKASLIFAVMWVVVRGLIPLVSGAIYQPLAEL 177

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
               +  + K++++  +    +   D+      +  ++KMSK E+K E K   G+P+IK 
Sbjct: 178 SAMYWGILLKLMMIAAVIFVLVGAADVKLQKMLFMKQMKMSKDEVKREHKNDEGDPMIKG 237

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
            ++ IAR           +RA +++ NPTHYA+ALRY   E+  PV++AKG +  A  +R
Sbjct: 238 ERRRIAREMANAPP-PRMARANVVVVNPTHYAVALRYAPDEHPLPVVIAKGMDEAAAAIR 296

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           + A E  +PI   P +AR+L+K V ++  IP   ++ +A ++  +
Sbjct: 297 RAAAEAEVPIVGNPPVARALYK-VGLDEPIPDALFETIAAILRWV 340


>gi|221209600|ref|ZP_03582581.1| bcscU [Burkholderia multivorans CGD1]
 gi|38639345|gb|AAR25811.1| BcscU [Burkholderia multivorans E243]
 gi|221170288|gb|EEE02754.1| bcscU [Burkholderia multivorans CGD1]
          Length = 343

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 155/340 (45%), Gaps = 4/340 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + P++K++ +A  +G+ P S E    +  +   + L          + +   ++  +
Sbjct: 3   EKNQPPTAKRLREAREKGDVPKSAETISSAFFVGVCVALAVGVGTLFARLQALFRLVFDA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 +  + I  L+   +   + L    +   ++ G+ +  +Q   V+  + + P   
Sbjct: 63  VG--AADPSARIAALIDAAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLVPQLS 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      P SIL   
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTRPMSILALI 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P I+ +++ 
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNRKMKMSIDEVRREHKEDEGDPHIEAKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A+++ ++A 
Sbjct: 241 LAREVQFASLPDRIGFASVVVYSP-RVAVALHYG-GIGTLPWVLARGEGDAAERIVRLAR 298

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +   P      LA++L+   P N  I P  ++ VAQL+  
Sbjct: 299 DALRPTLANVGLAQALYDTTPENGTIQPQHFREVAQLLKW 338


>gi|330872921|gb|EGH07070.1| type III secretion protein HrcU [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 359

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 155/348 (44%), Gaps = 7/348 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      +LA     L   +  +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLLAVSEVTLGLANESVNRLQALLALTFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  +   S +  + +          +  + L M+  + S  +Q   +     +K   K
Sbjct: 63  IERPFM---SAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFLFAPKALKLDIK 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           ++      K+++S  N++N + S +K + +G  +   +     T++   +++  + L+  
Sbjct: 120 KIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLANSDLATYLHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               + VL +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 IELFQHVLRVILGLLLVIALVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +A   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCKGEDEDALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            A +  IP+ +   LAR+L+K V +   IP     AV  +   +   +
Sbjct: 300 QAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 346


>gi|320538195|ref|ZP_08038090.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421]
 gi|320145012|gb|EFW36733.1| flagellar biosynthetic protein FlhB [Treponema phagedenis F0421]
          Length = 379

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 170/353 (48%), Gaps = 9/353 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
             + +TE P+  K+  A  EG  P S++ +    +    + L+      + S    L   
Sbjct: 22  EDEGRTEDPTETKLRKAREEGRVPKSQDMNSALVVFFPALALILLAPHILNSCMEILKFF 81

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVK 124
                Q  +         + + +    ++V P   + +  G+ S LIQ    + +   ++
Sbjct: 82  FLRCIQADIRSGEWFFVFIKYFA----QIVFPITFIALTAGVLSNLIQNRGFLFSTKPIQ 137

Query: 125 PSFKRVSL--REGIKR-IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           P F ++S        R ++SI  L N  KS +K+  +  +  + +  N    +  +  + 
Sbjct: 138 PKFDKISPNIVRFFTRALFSIEGLFNLAKSLMKVAAIVFVSYLIIKSNITVFISMLQVSF 197

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +++      K+L  + L +    + D  +   Q+   LKMSK EIK+EIK+  G+P+
Sbjct: 198 VQAVFYIAGLAAKILAAVSLLLLLFAIPDYFFQRKQFIDSLKMSKSEIKEEIKEQEGDPL 257

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK++ +      I  +     + A ++ITNPTHYA+A++Y   E  AP+++AKG + +A+
Sbjct: 258 IKSQLRR-QMQAIVRESARGAATADVVITNPTHYAVAVKYDLGEMPAPIVIAKGSDQLAQ 316

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           ++++IA E+NIPI E   LARSL+ QV I   +P  ++ A+  +  K+   K+
Sbjct: 317 RIKEIARENNIPIEENKPLARSLYAQVAIGKEVPYEYFNALVLIFTKLDKFKM 369


>gi|170738283|ref|YP_001779543.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
 gi|169820471|gb|ACA95053.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
          Length = 357

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 164/346 (47%), Gaps = 6/346 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            D KTE P+ +K+++A  +G    S +      +L  L    F + P + ++  ++   +
Sbjct: 2   SDEKTEQPTRRKLKEARKKGTVAKSVDLVAAVLVLVSLALFTFAWHPLLDALHQNISRAI 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                 +   +  +  +L H   + +       +   +    S   Q    ++ + V P 
Sbjct: 62  DFCGSER--SMHTLWSVLMHELANGAIACCAISVAAALAAALSIGAQVGLQVSFDPVMPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             R+S   G+K+I+S   L++ +K  VK +++   +   +   +  +   ++    ++  
Sbjct: 120 MDRLSPAAGLKQIFSKRALIDLLKMSVKAVVIAAALWHVIVSLFPLITSAMAEPLAALSQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             +  + K+L    +    + V+D    +       +MSK E+K E+K+  G P +K+ +
Sbjct: 180 ILWHALLKLLFAAAVLFLVVGVVDWKIQHWLMMRAQRMSKDEVKRELKEREGEPKLKHER 239

Query: 247 KSIARSRIRH---KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           +  A+  +      +  A  RA +++ NPTHYA+ALRY++ E   PV++AKG +  A+++
Sbjct: 240 RKRAKELVNGGGESLSGAVGRANVVVVNPTHYAVALRYVRGETPLPVVLAKGIDDAAREI 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           R +A +  +PI   P +AR+L+ +V  +  IP   ++ VA ++  +
Sbjct: 300 RALATQRGVPIVANPPVARALY-EVAEHRPIPSELFEVVAAILRWV 344


>gi|206896079|ref|YP_002246703.1| flagellar biosynthetic protein FlhB [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738696|gb|ACI17774.1| flagellar biosynthetic protein FlhB [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 343

 Score =  268 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 169/347 (48%), Gaps = 12/347 (3%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              +TE PS +++E A+ EGN P S E +    +   ++ L  ++   + S       + 
Sbjct: 3   EGERTEPPSPRRLERAIQEGNVPQSPELTGAIGLFVFVLILRVYYPRFVSSWQRMWFGVF 62

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            S +         +V L T   L    L +          + + L+     L    + P 
Sbjct: 63  YSVSPETAAHDLAVVLLSTLPVLLVPLLAV----------VLATLVLSGVRLYPKKMVPK 112

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  + IKRI+S+ +L       +K+IL+  +      +    ++   + +P   + 
Sbjct: 113 LDGLNPAQNIKRIFSLQSLEQMGIGLLKVILLSVVAYFLAKDRLVGIMS-GTQDPIQFMS 171

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            +   +  +L+ ++     + + D  +   +W++ LKM+K+E+K+E+K   G+P +K R 
Sbjct: 172 LSASILTDILLYLVAVYLLIGLADYAFQRRRWWNSLKMTKEEVKEEMKSIEGDPTVKARL 231

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +S  R     + +    +AT++ITNPT YA+ALRY +    AP LVAKG   +A++++  
Sbjct: 232 RSRMRQYAMRRSLADVKKATVVITNPTEYAVALRYEKG-MVAPELVAKGAGWLAQRIKDE 290

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A  +N+P+   P LAR++F++V +   I P  Y+AVA ++ ++  KK
Sbjct: 291 ARRYNVPVVVRPELARTIFRKVEVGDYITPDLYQAVAAVLVEVMKKK 337


>gi|313901501|ref|ZP_07834951.1| type III secretion exporter [Thermaerobacter subterraneus DSM
           13965]
 gi|313468239|gb|EFR63703.1| type III secretion exporter [Thermaerobacter subterraneus DSM
           13965]
          Length = 407

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 156/336 (46%), Gaps = 2/336 (0%)

Query: 20  EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED--I 77
             A   G    S +      +LA               V      L A +      D  +
Sbjct: 1   RQARRRGQVARSADLPAALVLLALAALAGTLVPLAARQVAGLARRLWAPSPAPLPADWTV 60

Query: 78  SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK 137
           +    L   + L       P  L   +    +  +Q   +       P ++RV+   G++
Sbjct: 61  AQAADLGRVVLLGTLAAAGPLALAGWVVAAAAGFVQAGGLFQPGLAAPRWERVNPLAGLQ 120

Query: 138 RIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           R+ S   LV  +K+ VK+ ++   +  +L      ++    A   ++L  A  +++ +L 
Sbjct: 121 RLVSRRALVELLKAPVKLAVMAAALGPALLGAGMQLITATGAPLPAMLGLAGRSLQGLLW 180

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
              L    + + D  + + +    L+M+ QE K + K++ G+P+++ R +   R   R +
Sbjct: 181 RGALAYLVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQRIRQRQRHLARRR 240

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M++   RA +++TNPTH A+ALRY      APV+VAKG + +A ++R +A +H +P+ EE
Sbjct: 241 MLQEVPRADVVVTNPTHVAVALRYDPARMGAPVVVAKGVDFLALRIRALAEQHGVPVMEE 300

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           P+LAR+L++ V +   IP  FY AVA+++  ++  +
Sbjct: 301 PALARALYRAVEVGREIPAAFYVAVAEVLAFVWRLR 336


>gi|261344588|ref|ZP_05972232.1| type III secretion system protein BsaZ [Providencia rustigianii DSM
           4541]
 gi|282567502|gb|EFB73037.1| type III secretion system protein BsaZ [Providencia rustigianii DSM
           4541]
          Length = 361

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI+D+  +G +  S++    ++I+  +  L+   +  +Y +   +  +L  
Sbjct: 3   EKTEKPTDKKIKDSAKKGQSFKSKD--TVAAIVLVVGALVIDGAASLYELGGLMKRILLH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                +++      LL   S     LV+P L+   + G    L+Q    L    +K  F 
Sbjct: 61  PYDIHIDN------LLWQFSKIFLSLVLPILIACFLSGTIVSLLQSRFRLATEAIKIDFT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   G K+I+S+N+L   +K+ + +++               +        + ++   
Sbjct: 115 KLNPIAGFKKIFSLNSLKELIKAILYLLVFSISAATFFVVWRQEIFMLYRTTINGMMSSW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                  + + L     + V+D    +  +   LKM KQE+K E K + G+P IK+ +K 
Sbjct: 175 VTLCILFVFVFLAVAVFIVVIDAIAEFFLFIKNLKMEKQEVKKEFKDNEGDPHIKSARKG 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +  ++      +T I+ NPTH A+ + Y       P L+AK + + AK + K A 
Sbjct: 235 LHQEILSEEVKSNVRNSTFIMANPTHIAMLIYYDSNIAPLPFLMAKMRGVQAKAIIKYAQ 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +  +P+  +  LAR +++    +S I     ++V Q+I  +   ++
Sbjct: 295 QQGVPVVRDIILARQIWRTYKKDSFIDDQGLQSVMQIITWLIRVEL 340


>gi|310823551|ref|YP_003955909.1| type III secretion protein, flhb/hrpn/yscu/spas family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396623|gb|ADO74082.1| Type III secretion protein, FlhB/HrpN/YscU/SpaS family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 339

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 10/338 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTE P++K++ DA  +G  P SR  S  ++ L  ++    +   G+  +      ++  
Sbjct: 2   SKTEKPTAKRLRDARRKGQLPRSRLLSSSATTLGGVLGFTAWAPEGVERLRQWTAHVMRG 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               +  +                 L  P L   ++  +   L      LN+ HV P+ +
Sbjct: 62  QGTLEGWEAG---------GWLVLGLSGPALGGALVASLAVSLAVAGVGLNMEHVAPNLE 112

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R+S   G KR+ S+   V  +K+ +   ++  ++   + E     L  +       L H 
Sbjct: 113 RISPFAGWKRLLSVRAGVEGLKALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVHL 172

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +L+ +   +  L   D   +  + +  L MS++E+K E ++S G+P  K ++K+
Sbjct: 173 LDRLEPLLLRLSGCLLLLGGADYALARARHFKDLCMSREEVKREYQESEGDPRHKAQRKA 232

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R   +        +A+ ++ NPTH A+ALRY   E +AP LVAK Q   A  +R  A 
Sbjct: 233 LHRQLAQGGSARGVRKASAVVINPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEAQ 292

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
              IP+  +  LARSL     +   IP   Y+A A ++
Sbjct: 293 RRGIPVVRDVPLARSLI-SYDVGEQIPEELYQAAAAVL 329


>gi|170737797|ref|YP_001779057.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
 gi|169819985|gb|ACA94567.1| type III secretion exporter [Burkholderia cenocepacia MC0-3]
          Length = 343

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 159/348 (45%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      + P++K++ +A  +G+ P S E    +  +   + L          V +
Sbjct: 1   MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGALFARVQA 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++  +      +  + +  L+   +   + L    +   +  G+ +  +Q   V+  
Sbjct: 55  LFRLVFDAVG--AADPSARLAALIDGAARDWATLSAQIVAAGLQAGLLAGFVQVGGVMAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLMKTALLVATLGWLIVESLDPSVQSGFTR 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SIL      +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P
Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ +++ +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A
Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAA 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++ ++A +   P      LA++L++  P N  I P  ++AVAQL+  
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338


>gi|15042145|gb|AAK81926.1|AF292566_10 RscU [Pseudomonas fluorescens]
          Length = 365

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 163/344 (47%), Gaps = 7/344 (2%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
                K    S+KK+ D   +G    S++ +   ++ A     LF     +      + +
Sbjct: 2   SDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLL 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L+  TQ     +  ++F    +  S + +++    + +   + S  +Q   +     +K
Sbjct: 62  PLSRLTQPFTRALEEVLFEGMTVFFSFALVMV---GVAITTKLISSWMQFGLLFAPETLK 118

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
             F R++    +K+++S   L+N + S  K  L+ +I+ + +  +  T+++  +++  S 
Sbjct: 119 LDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLDTLINLATSDLQSY 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +       R +L + L  +  L ++D+    H +  +++M++ E+  E K   G+P +K 
Sbjct: 179 ILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238

Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +++S+A    + +      +   + +++ NPTH+A+AL Y   +   P+LV+KG +  A+
Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEAR 298

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            + + A   ++P+ +   LAR+L+    + ++IP    +AVA +
Sbjct: 299 TLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLRAVALI 341


>gi|229588264|ref|YP_002870383.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360130|emb|CAY46987.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 365

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 163/344 (47%), Gaps = 7/344 (2%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
                K    S+KK+ D   +G    S++ +   ++ A     LF     +      + +
Sbjct: 2   SDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLL 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            L+  TQ     +  ++F    +  S + L++    + +   + S  +Q   +     +K
Sbjct: 62  PLSRLTQPFTRALEEVLFEGMTVFFSFALLMV---GVAITTKLISSWMQFGLLFAPETLK 118

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
             F R++    +K+++S   L+N + S  K  L+ +I+ + +  +  T+++  +++  S 
Sbjct: 119 LDFNRLNPISQVKQMFSAQQLMNLLMSIAKACLIASILYVVIWPSLGTLINLATSDLQSY 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +       R +L + L  +  L ++D+    H +  +++M++ E+  E K   G+P +K 
Sbjct: 179 ILALIALFRHLLHVCLGMLLVLALIDLIMVRHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238

Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +++S+A    + +      +   + +++ NPTH+A+AL Y   +   P+LV+KG +  A+
Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEAR 298

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
            + + A   ++P+ +   LAR+L+    + ++IP    +AVA +
Sbjct: 299 TLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLRAVALI 341


>gi|257487237|ref|ZP_05641278.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|238577784|gb|ACR46695.1| HrcU [Pseudomonas syringae pv. tabaci]
 gi|331009149|gb|EGH89205.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 359

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 150/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      ++      L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  N++N + S +K + +G  + + +      ++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILHVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LSHEILNQEPSAAPHPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|71737972|ref|YP_273541.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289623686|ref|ZP_06456640.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647640|ref|ZP_06478983.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|42562005|gb|AAS20447.1| HrcU [Pseudomonas syringae pv. phaseolicola]
 gi|71558525|gb|AAZ37736.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322958|gb|EFW79048.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329919|gb|EFW85907.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330871290|gb|EGH05999.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330984961|gb|EGH83064.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 359

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 150/347 (43%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      ++      L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  N++N + S +K + +G  + + +      ++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +  
Sbjct: 240 LSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|225164042|ref|ZP_03726327.1| type III secretion exporter [Opitutaceae bacterium TAV2]
 gi|224801348|gb|EEG19659.1| type III secretion exporter [Opitutaceae bacterium TAV2]
          Length = 369

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/351 (24%), Positives = 165/351 (47%), Gaps = 2/351 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D  D KTE PS K++ +A   G    + E  +   + A    L      G   V  
Sbjct: 1   MAEQD-QDQKTELPSEKRLSEAYERGQFAKTPELGIVFMLAAAFGALSMACEDGARRVAE 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +       ++        +       A  L  P ++  +   + S  IQ    +  
Sbjct: 60  YATGIFEQLHTVRISSGLVPAPVAMGAVTFAGAL-APLMIASVGAALLSGGIQTGFRVTP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +    ++++   G  R++S N LV+    F+K+ ++   + ++        L      
Sbjct: 119 KALGFKPEKLNPVTGFGRVFSKNTLVHGGIDFLKVSVIAFSLWLAARTLLGDPLFTAPVE 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              +      ++  +L  +LL +  +  +   + + + + +L M++QE+K+E +QS G+ 
Sbjct: 179 TAYLGEFIHRSLMALLARLLLAMGIIAAISYAYEWFKTHRELMMTRQEVKEERRQSDGDA 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K+  + +AR  +R +M+ A   A +++TNPTHYA+AL+Y +  + APV++AKG   +A
Sbjct: 239 LVKSALRRMARRLMRRQMLAAVPTADVVVTNPTHYAVALKYERGIDKAPVVLAKGDRRLA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            +++ IA EH +P  E+ ++AR LF    +   IP   Y+AVA ++  +Y 
Sbjct: 299 LRIKAIAAEHEVPTVEDRAVARLLFATGEVGKPIPGELYQAVAGILAMVYR 349


>gi|167840287|ref|ZP_02466971.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 360

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 19  IEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS 78
           ++ A  +G    S++ +   ++ A +  L    S     +T  +   L      +     
Sbjct: 14  LKTAREKGQVAKSKDVADAVTLAAAIGVLTAGESMLTGGLTRAIRTALDFVHGER--TPQ 71

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
             +  L  L+ SA+  ++P +   ++ G+ S   Q   ++ L  V P F  ++   GIKR
Sbjct: 72  ATLAALHDLAASAALTMLPFVAAAIVAGVASQAPQAGFMITLEPVMPKFDAINPMAGIKR 131

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           I+S+ +L+  +K  VK I++  +I   +T  +  ++  +      +    +  + K++ +
Sbjct: 132 IFSLKSLLELVKMIVKAIVLACVIWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLVGV 191

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-K 257
           + L +A     D   +   +    +M+K+E K E K+S G+P  K  ++ +AR       
Sbjct: 192 VALVVAVFAAADYKIARVMFIRDNRMTKEETKREHKESEGDPHTKGERRRLAREIATSAP 251

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
             +   +A +++ NPTHYA+A+RY   E+  P ++ K  +  A  +R+ A+   +PI   
Sbjct: 252 PRQKVGQANVLVVNPTHYAVAIRYAPDEHPLPRVIEKAVDAGALALRRHAHALGVPIVGN 311

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           PS+AR+L++ V  ++AIP   ++ VA ++  +
Sbjct: 312 PSVARALYR-VERDAAIPEELFETVAAILRWV 342


>gi|332559798|ref|ZP_08414120.1| FlhB2 [Rhodobacter sphaeroides WS8N]
 gi|332277510|gb|EGJ22825.1| FlhB2 [Rhodobacter sphaeroides WS8N]
          Length = 359

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 172/344 (50%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D  ++K   PS +K+E+A  +G  P S++    ++    L   +      +         
Sbjct: 3   DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           LL  A +            +  L  +A   V+P  LL  +   G+ L QR  V+  + + 
Sbjct: 63  LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +      +   +   P   
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSDDIFGLLWMEPKIA 182

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L   F  + + L+++++    + ++D  W   +   + +MS+QE+ +E K + G+P +K 
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           + A E  +PI  +P  AR+L   V I   I P  Y+AVA  +  
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346


>gi|221640820|ref|YP_002527082.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides KD131]
 gi|221161601|gb|ACM02581.1| Type III secretion exporter [Rhodobacter sphaeroides KD131]
          Length = 359

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 172/344 (50%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D  ++K   PS +K+E+A  +G  P S++    ++    L   +      +         
Sbjct: 3   DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           LL  A +            +  L  +A   V+P  LL  +   G+ L QR  V+  + + 
Sbjct: 63  LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +      +   +   P   
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILHRSDDIFGLLWMEPKIA 182

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L   F  + + L+++++    + ++D  W   +   + +MS+QE+ +E K + G+P +K 
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           + A E  +PI  +P  AR+L   V I   I P  Y+AVA  +  
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346


>gi|268592372|ref|ZP_06126593.1| type III secretion system protein BsaZ [Providencia rettgeri DSM
           1131]
 gi|291312158|gb|EFE52611.1| type III secretion system protein BsaZ [Providencia rettgeri DSM
           1131]
          Length = 373

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 153/346 (44%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D+  +G +  S++    ++I+  +   +      +Y +   +  +  S
Sbjct: 3   EKTEKPTDKKIRDSAKKGQSFKSKD--SVAAIVLVVSAFVIEGVSSLYELGGLMRKIFLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            T+ K++       LL         +V+P L    + G    L+Q    L    +K  F 
Sbjct: 61  PTEIKID------ALLWQFFTIFLSIVLPVLFTCFLSGTIISLLQSRFRLASEAIKLDFT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   G K+I+S+N+L   +K+ + +I+    I +        +        + ++   
Sbjct: 115 KLNPIAGFKKIFSLNSLKELIKAILYLIVFIISILVFFIVWRKDIFMLYRTMINGMISQW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                  +++ L     + ++D    +  +   LKM KQE+K E K + G+P IK+ ++ 
Sbjct: 175 VSLCVTFIVVFLAVALIIILVDAIAEFFLYIKNLKMEKQEVKKEYKDNEGDPHIKSARRG 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +  ++      +T ++ NPTH AL + Y       P L +K +   AK + K A 
Sbjct: 235 MHQELLSEEVKSNVRNSTFVMANPTHIALLIYYDSNIAPLPFLFSKSKGSQAKAIIKYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +  +P+  +  LAR +++    +S I     + V Q+I  +   ++
Sbjct: 295 QQGVPVIRDIVLARQIWRSYKNDSFIDEKGLEDVMQIISWLIRIEL 340


>gi|218193976|gb|EEC76403.1| hypothetical protein OsI_14046 [Oryza sativa Indica Group]
          Length = 324

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 136/245 (55%)

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                + D + I+  +  L   A   ++P +   ++  + S ++    V +   ++P F 
Sbjct: 8   FDHSMVNDPNLILSQIIQLIKGAMVALLPLITGVVLVALVSPVMLGGLVFSGKSLQPKFS 67

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   GI +++S       +K+ +K +L+G+     L  ++  M+  IS +P + + +A
Sbjct: 68  KLNPLPGIAKMFSAQTGAELLKAILKSVLMGSSAGFFLWYHWPEMMRLISESPLTAMSNA 127

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V    ++++L I  +   D+ +  +  + KL+MS+Q+I+DE KQ  G+P +K R + 
Sbjct: 128 LNLVGLCALLVVLSIIPMVGFDVIFQLYSHFKKLRMSRQDIRDEYKQMEGDPHVKGRIRQ 187

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + R+  R +MME   +A +I+TNPTHY++ALRY + +  AP +VAKG  LIA ++R+I  
Sbjct: 188 MQRAAARRRMMEDVPKADVIVTNPTHYSVALRYDENKMSAPKVVAKGAGLIALRIREIGT 247

Query: 309 EHNIP 313
           E+ +P
Sbjct: 248 ENRVP 252


>gi|77464899|ref|YP_354403.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides 2.4.1]
 gi|77389317|gb|ABA80502.1| flagellar biosynthesis pathway, component FlhB [Rhodobacter
           sphaeroides 2.4.1]
          Length = 359

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 172/344 (50%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D  D+K   PS +K+E+A  +G  P S++    ++    L   +      +         
Sbjct: 3   DGEDDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGDIGST 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           LL  A +            +  L  +A   V+P  LL  +   G+ L QR  V+  + + 
Sbjct: 63  LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +      +   +   P   
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSDDIFGLLWMEPKIA 182

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L   F  + + L+++++    + ++D  W   +   + +MS+QE+ +E K + G+P +K 
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           + A E  +PI  +P  AR+L   V I   I P  Y+AVA  +  
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346


>gi|300982207|ref|ZP_07175919.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS
           200-1]
 gi|300307277|gb|EFJ61797.1| putative flagellar biosynthesis protein FlhB [Escherichia coli MS
           200-1]
          Length = 247

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 127/215 (59%)

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++S       +K+ +K ILVG++    L  ++  M+  ++ +P + + +A   V    ++
Sbjct: 1   MFSAQTGAELLKAILKTILVGSVTGFFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALL 60

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           ++L +  +   D+ +       KL+MS+Q+I+DE KQS G+P +K R + + R+  R +M
Sbjct: 61  VVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRM 120

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           M    +A +I+ NPTHY++AL+Y + +  AP +VAKG  L+A ++R+I  E+N+P  E P
Sbjct: 121 MADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAP 180

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            LAR+L++   I   IP   Y AVA+++  ++  K
Sbjct: 181 PLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 215


>gi|325527471|gb|EGD04805.1| flagellar biosynthesis pathway component [Burkholderia sp. TJI49]
          Length = 343

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 153/340 (45%), Gaps = 4/340 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + P++K++ +A  +G+ P S E    +      I L          + +   ++  +
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAETISSACFAGVCIALAVGIGALFARLQALFRLVFDA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A     +  + I  L+   +   + L    +   ++ G+ +  +Q   V+  + + P   
Sbjct: 63  AG--AADPSARIAVLIDGAARDWATLSAQIVAAGLLLGVLAGFVQVGGVMAWSRLMPQLS 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      P SIL   
Sbjct: 121 RLNPAEGLKNLWSLRNLVNLAKMLLKTTLLVATLGWVIVESLDAAVQSGFTRPISILALI 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +     L    + ++DI     ++  K+KMS  E++ E K+  G+P I+ +++ 
Sbjct: 181 VKLLMLLFGWAALIYIVMALIDIVHQRREFNQKMKMSIDEVRREHKEDEGDPHIEAKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A+++ ++A 
Sbjct: 241 LAREAQFAALPDRIGFASVVVYSP-RVAVALYYG-GVGTLPWVLARGEGEAAERIVRLAR 298

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +   P      LA+SL+   P N  I    ++ VAQL+  
Sbjct: 299 DALRPTLANAGLAQSLYDTTPENGTIQQQHFREVAQLLKW 338


>gi|126463741|ref|YP_001044855.1| flagellar biosynthesis protein FlhB [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105405|gb|ABN78083.1| type III secretion exporter [Rhodobacter sphaeroides ATCC 17029]
          Length = 359

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 173/344 (50%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           D  ++K   PS +K+E+A  +G  P S++    ++    L   +      +         
Sbjct: 3   DGEEDKPHEPSQRKLEEARRKGEVPRSQDLVTAAAYAGLLAAAMTLGDRVLQRTGEIGST 62

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           LL  A +            +  L  +A   V+P  LL  +   G+ L QR  V+  + + 
Sbjct: 63  LLGQADRLSTLFSGQAQAPVGGLLAAAVSAVLPLFLLPALAAGGALLAQRSLVVAPSKLA 122

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  +R+S   G++  +    LV+F+KSFVK++LVG ++   +      +L  +   P   
Sbjct: 123 PRLERISPLAGLRNRFGRAALVDFLKSFVKLLLVGLLLAFFILRRSDDILGLLWMEPKIA 182

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           L   F  + + L+++++    + ++D  W   +   + +MS+QE+ +E K + G+P +K 
Sbjct: 183 LGTMFALLLQFLLLVVILSVAVGLVDYLWQRFEHLRRNRMSRQELVEEAKDAEGDPHVKA 242

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +++  A     ++M++  ++A +++ NPTHYA+ALR+ + +  APV VAKG + +A ++R
Sbjct: 243 QRRRRAVEIATNRMLQDVAKADVVVVNPTHYAVALRWKRGDKRAPVCVAKGVDEVAARIR 302

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           + A E  +PI  +P  AR+L   V I   I P  Y+AVA  +  
Sbjct: 303 ERAIEAGVPIHRDPPAARALHAMVQIGEEIRPEHYQAVAAAVRF 346


>gi|238787480|ref|ZP_04631278.1| Type III secretion protein, YscU/HrpY family [Yersinia
           frederiksenii ATCC 33641]
 gi|238724267|gb|EEQ15909.1| Type III secretion protein, YscU/HrpY family [Yersinia
           frederiksenii ATCC 33641]
          Length = 321

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 137/304 (45%), Gaps = 1/304 (0%)

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LF 102
           ++ L+ +F    Y++      L+ S+  +  + I   +  +    +     ++  L    
Sbjct: 1   MLVLVAYFLLTGYTLIDQASALIRSSIHQLQQPIGMALMRIGTQCMEVFIHIMGILGGAL 60

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
           ++  + S + Q  P+L    V+   + ++     K+++S+++L    KS +K+ ++  I 
Sbjct: 61  VLMTLLSGIAQVGPLLATKAVEFKGEHINPINNAKQLFSLHSLFELSKSLLKVGVLTLIF 120

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
              L     +            +      +  +L  ++      +++D  +  +    +L
Sbjct: 121 GYLLIRYAPSFGYLAYCGSSCAIPVFTTLMSWILGALIACYVVFSLMDYSFQRYNTMKQL 180

Query: 223 KMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI 282
           KMS  E+K E K S G+P IK +++ + +        +   R+T ++ NPTH+A+ L Y 
Sbjct: 181 KMSHDEVKREHKDSDGDPHIKQKRRQLQQEVQSGSFAKNVQRSTAVVRNPTHFAVCLFYH 240

Query: 283 QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
             +   P+++ KG    A  + KIA +  IP+ E  +LAR+L + V   + IP   ++ V
Sbjct: 241 ADDAPLPIVIEKGTGERAALIVKIAEQQGIPVVENITLARALHRDVDCGNTIPESLFEPV 300

Query: 343 AQLI 346
           A ++
Sbjct: 301 AAIL 304


>gi|292487274|ref|YP_003530146.1| surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
 gi|292900354|ref|YP_003539723.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200202|emb|CBJ47330.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552693|emb|CBA19738.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
          Length = 371

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 139/326 (42%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  D+  +G    S++     ++L    YL +       S TS   ++L  
Sbjct: 3   EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L D       LT L      L +P + +  + G    L+Q    +    +K +F+
Sbjct: 61  GDKISLNDF------LTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+K+I+S+  +   +KS   +++        +  +    +   + +   ++   
Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K +++ + + A + ++D    Y   +  +KM K E+K E K+S GNP IK  ++ 
Sbjct: 175 ITLTIKAVMVFIGWSAFVLIIDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKGARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
                +  + M A   + +++ NPTH A+A+ +       P +  +  N+ AK     A 
Sbjct: 235 AHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKAAIAYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           +  IP+     L R L+     +S I
Sbjct: 295 KIGIPVVRYIPLTRRLYHTYSQHSFI 320


>gi|82470755|gb|ABB77407.1| HrcU [Pantoea stewartii subsp. stewartii]
          Length = 360

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 162/347 (46%), Gaps = 9/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK++DA  +G  P S++          +  ++     G+  + + + + L  
Sbjct: 3   EKTEKPTAKKLQDARRKGQVPQSQDVPKLLICAGVVETVMALDDVGMQKLQALMMLPLMR 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q   + +S +        L  S      + +  +  I    IQ  P+     +KP F 
Sbjct: 63  LNQPFEQVLSELA---GSALLIVSTFFGITVAVAALLRIIGGWIQYGPLFATEALKPDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++     ++++S+  L + + S +K   + TI  + L+ +  ++      + +S     
Sbjct: 120 RLNPVNQFRQMFSVKKLTDMLSSMLKAAAICTIFILVLSTDLESLSRLAYGDLNSFWPAV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + +V    LL +  +T+LD G   + +  + +MS Q+I+DE KQS G+P +K  + +
Sbjct: 180 EVLLTRVSRQTLLTLLIMTLLDFGLQKYYFLKQQRMSHQDIRDEHKQSEGDPHMKGHRHA 239

Query: 249 IARSRIRHKM----MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           +A+  +   +     E   +A +++ NPTHYA+AL Y       P ++ KG++  AK + 
Sbjct: 240 VAQELLNAPVQAVKREPLEKADLLLVNPTHYAVALYYRPELTPLPRIICKGEDSDAKTLI 299

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             A +  IP+     LAR+L+ Q      IP    +AVA++ Y++  
Sbjct: 300 VRAQQAKIPVIRFIWLARTLY-QSQEGQLIPRHTLQAVARV-YRVLR 344


>gi|304321150|ref|YP_003854793.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis
           HTCC2503]
 gi|303300052|gb|ADM09651.1| flagellar biosynthetic protein FlhB [Parvularcula bermudensis
           HTCC2503]
          Length = 355

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 168/353 (47%), Gaps = 2/353 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+EN     K+   + ++I+ A  +G+   S E  +F+  L  L+ LL F S    ++ +
Sbjct: 1   MAENQDEAEKSHEATPERIKQARQKGDVAQSPEVLVFARYLGILVALLGFVSALAMNMAT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L+V +A   +     +S    L      S++      +   +   I   + Q+  V   
Sbjct: 61  SLNVFMARPFEASARLMSDADPLEGF--GSSALFFFALMAAPIALVIAGLIAQQALVFAP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           N +KP   +++  +  K+ +    L +F+++ VKI +V  +  +        +   + A 
Sbjct: 119 NKIKPDLNKLNPVKNAKQKFGKAALTDFVRNTVKITIVMVVGMVIGLAQTGRLTASVGAP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  +        R ++I  ++  A    +D+   + Q+  +LKMS+QE+KDE K + G+P
Sbjct: 179 PGLLAEELAGLARIMVITGVILAAIAAGIDLPIKWSQYRERLKMSRQELKDETKSTEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
             ++ ++  AR   +++ +     A +++ NP HYA+AL++ +   + P  +AKG + IA
Sbjct: 239 AQRSERQKRAREIAQNRQLLDVPDADVVVVNPEHYAVALQWNRHRGEVPRCIAKGVDAIA 298

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R IA E  +P++ +   ARSL+  V +   I    Y+AVA  I      +
Sbjct: 299 LRIRNIADEAGVPLYRDVQTARSLYAVVEVGEEIRYEHYEAVAAAIRFADKLR 351


>gi|312171382|emb|CBX79641.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           ATCC BAA-2158]
          Length = 371

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 139/326 (42%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  D+  +G    S++     ++L    YL +       S TS   ++L  
Sbjct: 3   EKTEKPTDKRRRDSAKKGQTFKSKDLITTVTLLTGGGYLAYVMD--FRSFTSFYSLVLRE 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L D       LT L      L +P + +  + G    L+Q    +    +K +F+
Sbjct: 61  GDKISLNDF------LTELMRVFLNLSLPFIAVCTVAGAVMTLLQTRFSIATEAIKLNFE 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+K+I+S+  +   +KS   +++        +  +    +   + +   ++   
Sbjct: 115 ALDPVKGLKKIFSMRTIKELVKSIFYLVVFICTCYNLIHGDLIRAVSIYNGSIEELISVW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K +++ + + A + ++D    Y   +  +KM K E+K E K+S GNP IK  ++ 
Sbjct: 175 ITLTIKAVMVFIGWSAFVLIMDFFVEYFLHFKDMKMDKHEVKQEHKESDGNPEIKGARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
                +  + M A   + +++ NPTH A+A+ +       P +  +  N+ AK     A 
Sbjct: 235 AHHEILSGEDMAAIRNSEVVMANPTHIAIAIYFNPEVASLPFIALRSTNMKAKAAIAYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           +  IP+     L R L+     +S I
Sbjct: 295 KIGIPVVRYIPLTRRLYHTYSQHSFI 320


>gi|3282784|gb|AAC25072.1| HrcU [Pseudomonas syringae pv. phaseolicola]
          Length = 359

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 149/347 (42%), Gaps = 7/347 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      ++      L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVISEITLGLADDSVDRLQALLALSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  N++N + S +K + +G  + + +      ++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ 
Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQ 239

Query: 249 IARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++     +  
Sbjct: 240 LSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEGLALIA 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            A +  IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 300 RAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 345


>gi|254575135|gb|ACT68036.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 365

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 147/347 (42%), Gaps = 14/347 (4%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL--FFFSPGIYSVTSDLHVLL 66
            KTE P+SKK +D+  +G    S++      +L  + +L     F P I   T  L    
Sbjct: 3   EKTEQPTSKKRKDSAKKGQTFKSKDVITTVILLVGIYFLAHAVSFGPFISFYTHLLQYTT 62

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                  L D++ I F L           +P + +  + G  + L+Q    L    +K +
Sbjct: 63  RPGMGVFLLDLARIFFTL----------ALPFIAVCTLVGFAATLLQTGFTLATEAIKLN 112

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           FK ++  EG+K+I+S+  +   +KS   +++        + ++    L    A+   ++ 
Sbjct: 113 FKALNPVEGVKKIFSMRTVKELVKSLCYLVVFAATCHSLIQQDLRQALTLYRADMPGLVA 172

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                  K +++ + +   + + D+   Y   +  +KM K E+K E K+S GNP IK+ +
Sbjct: 173 VWVALALKAVMVFIAWSIFVLLADLLVEYFLHFKDMKMDKHEVKQEHKESDGNPQIKSAR 232

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   +  +  + M A   + +++ NPTH A+A+ +       P +  +  NL AK     
Sbjct: 233 RRTHQDLLSGEEMAAVRNSEVVLANPTHIAMAVYFNPEVASLPFIALRCTNLKAKAAIAY 292

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK--AVAQLIYKIYH 351
           A +  +P+     L R L+      S I    Y    V  ++  +  
Sbjct: 293 AEKIGVPVVRNIPLTRRLYHTYSQYSFISLEDYVLMDVMDVLIWLRQ 339


>gi|254250203|ref|ZP_04943523.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
 gi|124876704|gb|EAY66694.1| Flagellar biosynthesis pathway, component FlhB [Burkholderia
           cenocepacia PC184]
          Length = 343

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 159/348 (45%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      + P++K++ +A  +G+ P S E    +  +   + L          V +
Sbjct: 1   MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++  +         + +  L+   +   + L    +   ++ G+ +  +Q   V+  
Sbjct: 55  LFRLVFDAVGAADP--AARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGGVMAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWVIVESLDPSVQSGFTR 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SIL      +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P
Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ +++ +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A
Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAA 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++ ++A +   P      LA++L++  P N  I P  ++AVAQL+  
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338


>gi|213420820|ref|ZP_03353886.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 221

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 117/198 (59%)

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
            LVG +    L  ++  M+  ++ +P   + +A   V    ++++L +  +   D+ +  
Sbjct: 2   TLVGCVTGFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQI 61

Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
                KL+MS+Q+I+DE K+S G+P +K + + + R+  + +MME   +A +I+TNPTHY
Sbjct: 62  FSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHY 121

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL+Y + +  AP +VAKG  LIA ++R+I  EH +P  E P LAR+L++   I   IP
Sbjct: 122 SVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIP 181

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y AVA+++  ++  K
Sbjct: 182 GQLYAAVAEVLAWVWQLK 199


>gi|83646791|ref|YP_435226.1| flagellar biosynthesis pathway protein FlhB [Hahella chejuensis
           KCTC 2396]
 gi|83634834|gb|ABC30801.1| Flagellar biosynthesis pathway, component FlhB [Hahella chejuensis
           KCTC 2396]
          Length = 342

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 166/326 (50%), Gaps = 2/326 (0%)

Query: 29  PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
             S+E S   ++ A  + L            S    L A A     + I+   + +  +S
Sbjct: 2   AKSQEVSHVFALAAGALLLWSVSQDLATRFFSLCQKLFADAASVDFDIITAKAWGIWIVS 61

Query: 89  LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
              S ++ P L++ M+ G+   ++Q  PV + + +KP  KR++   G KR++SI  L   
Sbjct: 62  -EVSWILSPLLVVMMVIGVLCSIVQTGPVFSFHPIKPDIKRINPITGFKRLFSIKILFEL 120

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           +K+ +K+ L+G+++  +L      +    + +  + L         ++  +   +  + +
Sbjct: 121 VKNLIKLALLGSVLYWALAGLMPDLFGLTAKSAATALPVFIGYAAGIIFKLTAALLLIAL 180

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA-TSRATI 267
           +D+ ++  ++   ++M+K+E+KDEIK+  G+P I+ ++K + R   +     A    A +
Sbjct: 181 IDMLFTRWEFMRNMRMTKKEVKDEIKRREGDPHIRAKRKELERELRKRSGSAASVPEADL 240

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           IITNP HYA+ ++Y   +  AP +  KG + +AK +R +A +H +PI ++P LAR LFK+
Sbjct: 241 IITNPEHYAVVVKYDAKKMAAPTVTGKGGDAMAKHLRDLARQHQVPIIQDPPLARYLFKK 300

Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
             I S IP   +  VA+ + + Y  K
Sbjct: 301 TEIGSMIPEDAFVGVARALRRAYQIK 326


>gi|238752378|ref|ZP_04613856.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC
           43380]
 gi|238709419|gb|EEQ01659.1| Type III secretion protein, YscU/HrpY family [Yersinia rohdei ATCC
           43380]
          Length = 320

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 132/307 (42%), Gaps = 3/307 (0%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           +L  + Y L   +  I  + +     +    Q  +  ++HI             +V    
Sbjct: 1   MLVLVAYFLVTGNTLIEQIGALFRSAIEQLPQPLIMALAHIG---GECVAVLFHIVGILG 57

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
              ++  I S + Q  P+L    V+   + ++     K+++S+ +L    KS +K+ ++ 
Sbjct: 58  GALILVTILSCVAQVGPLLATKAVEFKGEHINPINNAKQLFSMRSLFELTKSLLKVGVLT 117

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
            I    L     +            +      +  +L  +L      ++LD  +  +   
Sbjct: 118 LIFGYLLMHYATSFGYLTYCGSSCAIPVFATLMSWLLGALLACYVVFSLLDYSFQRYNTM 177

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
            +LKMS+++IK E K S G+P IK +++ +          +   R+T ++ NPTH+A+ L
Sbjct: 178 KQLKMSREDIKREHKDSDGDPEIKQKRRQLQHEVQSGSFAKNVQRSTAVVRNPTHFAVCL 237

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
            Y   +   PV++ KG    A  + K+A +  +P+ E  +LAR+L + V     IP   +
Sbjct: 238 FYHADDAPLPVVIEKGAGERAALIIKLAEQQGVPVIENITLARALHRDVACGDTIPEPLF 297

Query: 340 KAVAQLI 346
           + VA ++
Sbjct: 298 EPVAAIL 304


>gi|212711698|ref|ZP_03319826.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM
           30120]
 gi|212685800|gb|EEB45328.1| hypothetical protein PROVALCAL_02773 [Providencia alcalifaciens DSM
           30120]
          Length = 361

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI+D+  +G +  S+++     ++     +       +Y++   +  +L +
Sbjct: 3   EKTEKPTDKKIKDSAKKGQSYKSKDSIAAIVLVTGAFVV--DGMSSLYNLGGLMKKILLN 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                ++D      LL   S     +V+P L+   + G    L+Q    L    VK  F 
Sbjct: 61  PNDIYIDD------LLWQFSKIFMSIVLPILIACFLSGAIISLLQSRFRLATEAVKLDFT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   G K+I+S+N+L  F+K+ + +++     T         +        + +    
Sbjct: 115 KLNPIAGFKKIFSLNSLKEFIKAILYLLVFSVSATTFFIVWRHEIFMLYRTTINGMTTQW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                  + + L     + ++D    +  +   LKM KQE+K E K + G+P +K+ +K 
Sbjct: 175 VTLCIIFVFVFLAVAVIIVLVDAIAEFFLFIKNLKMEKQEVKKEHKDNEGDPHLKSARKG 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +  ++  +   +T ++ NPTH A+ + Y    +  P L+ K + L AK + K A 
Sbjct: 235 LHQEILSEEVKSSIQNSTFVMANPTHIAMLIYYDANISPLPFLMFKTRGLQAKAVIKYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           E NIP+  +  LAR +++    +S I     + V Q++  +   ++
Sbjct: 295 EQNIPVVRDIILARQIWRNYKKDSFIDEQGLQDVMQIVTWLIRIEL 340


>gi|188534807|ref|YP_001908604.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis
           Et1/99]
 gi|188029849|emb|CAO97730.1| export protein for peptides using the type III secretion system
           [Erwinia tasmaniensis Et1/99]
          Length = 371

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 139/326 (42%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  D+  +G    S++    +++LA + YL +      +   S   ++L  
Sbjct: 3   EKTEKPTDKRRRDSAKKGQTFKSKDLITTTTLLAGVCYLAYAI--NFHPFISFYSLVLRE 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  L D       L  L      L +P + +  + G    L+Q    +    +K +FK
Sbjct: 61  GDKISLNDF------LVELMRVFFTLSLPFIAVCTIAGAVLTLLQTRFSIATEAIKLNFK 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  +G K+I+S+  +   +KS + +I+        +  +    +   + +   ++   
Sbjct: 115 ALNPVQGFKKIFSMRTIKELVKSLLYLIVFACSCYSLIRVDLGQAISIYNGSIDVLISVW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K +++ + +   + ++D    Y      +KM K E+K E K+S GNP IK  ++ 
Sbjct: 175 TALTMKAVMIFIAWSVFVLLIDFIAEYFLHSKDMKMDKHEVKQERKESDGNPEIKGARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
                +  + M A   + +++ NPTH A+A+ +       P +  +  N+ A+     A 
Sbjct: 235 AHHEILSGEEMAAIRNSEVVMANPTHIAIAIYFNPDVASLPFIALRSTNMKARAAIAYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           +  IP+     LAR L+      S I
Sbjct: 295 KIGIPVVRYIPLARRLYHNYSQYSFI 320


>gi|300871796|ref|YP_003786669.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli
           95/1000]
 gi|300689497|gb|ADK32168.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli
           95/1000]
          Length = 404

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 6/353 (1%)

Query: 6   APDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
             + +TE P+ +K   A  E G    S E +    +    + +         +++     
Sbjct: 45  EDEGRTELPTERKKRRAREEEGRVVNSVEINQTLVLGVTTVLIALLIGYLTNTLSQFFVD 104

Query: 65  LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +L   +       +  +  +   + L  ++     LL  ++ G+G  L Q   +     +
Sbjct: 105 ILNRISNADATMTMDGLPDIFIEIVLLIAKTAGIVLLTALIIGVGVNLAQTQFLFTTKKL 164

Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           KP+FKR++       +R++ S  NL+N  K   K+I++G +   ++      + + +   
Sbjct: 165 KPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVIGILTFTTINGRRNDLFNMVHME 224

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +   FF V +++  +++F+  + V+D  +   Q+ + LKM+K E+K+E K+  G+P
Sbjct: 225 LAQAMNVFFFIVLEMIGKVMIFMIIVAVVDYYFQRKQYINSLKMTKHEMKEEFKEMEGDP 284

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++KN+ + +AR  +   M+++   A +IITNPTH+A+AL+Y Q+ + AP++ AKG + IA
Sbjct: 285 LVKNQLQEMARKIVSRTMLKSVPEADVIITNPTHFAVALKY-QSGDYAPIVTAKGVDNIA 343

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA EH + I E   LAR L+  V I   IP   +  V++++ ++Y  +
Sbjct: 344 LKIKEIAKEHEVEIVENKPLARELYYNVDIGQYIPEKLFHVVSRILGEVYRIR 396


>gi|107025878|ref|YP_623389.1| type III secretion exporter [Burkholderia cenocepacia AU 1054]
 gi|116692938|ref|YP_838471.1| type III secretion exporter [Burkholderia cenocepacia HI2424]
 gi|105895252|gb|ABF78416.1| type III secretion exporter [Burkholderia cenocepacia AU 1054]
 gi|116650938|gb|ABK11578.1| type III secretion exporter [Burkholderia cenocepacia HI2424]
          Length = 343

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 159/348 (45%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      + P++K++ +A  +G+ P S E    +  +   + L          V +
Sbjct: 1   MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARVQA 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++  +      +  + +  L+   +   + L    +   ++ G+ +  +Q   V+  
Sbjct: 55  LFRLVFDAVG--AADPSARLAALIDGAARDWATLSAQIVAAGLLAGLLAGFVQVGGVMAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTR 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SIL      +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P
Sbjct: 173 PASILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ +++ +AR      + +    A++++ +P   A+AL Y       P ++A+G+    
Sbjct: 233 HIQAKRRQLAREAQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAG 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++ ++A +   P      LA++L++  P N  I P  ++AVAQL+  
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338


>gi|284006885|emb|CBA72154.1| type III secretion component protein SctU [Arsenophonus nasoniae]
          Length = 349

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 100/345 (28%), Positives = 180/345 (52%), Gaps = 3/345 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTE P++KKI+DA  +G    S+E      I+  L  LL   S  I    S    L 
Sbjct: 2   SGEKTETPTAKKIKDARKKGQILKSKEIVSSCIIVILLSLLLSLSSFFIEHFLSLFAYLQ 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            S+        + IV  + H++++    +I   +L ++    S+L Q   +L+ + +KP 
Sbjct: 62  DSSLLDFQTAKARIVPHIWHITINILLPIIIITILIIVL---SHLAQFGFLLSPSSLKPD 118

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            K ++   G K+I+S+  L+ F KS +K+I +G I+   +  N              I  
Sbjct: 119 IKHINPIAGAKKIFSLKILLEFFKSLLKVIFIGFIVWFVIKGNINFFFHLPKCGLKCIPI 178

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                + ++ I+ +L +  +++LD    YH +  +LKMSK+EIK E K+  GNP IK R+
Sbjct: 179 FIGQLLTQLTIICILGLIIISILDYCLEYHFYIKQLKMSKEEIKKEYKEMDGNPEIKGRR 238

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K + +  + + + +   ++++IITNPTH A+ +RYI+ E   P++  K  + +A+ +++I
Sbjct: 239 KQLHKELLVNNIRKQVKQSSVIITNPTHIAIGIRYIKHETPLPIVTLKQTDALAQLVKRI 298

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           A + NIPI +   LARSL+ +  I+  IP    + +A++++ +  
Sbjct: 299 AIQENIPIIQRIPLARSLYAEGIIDQYIPENTIETMAEVLHWLIQ 343


>gi|167589635|ref|ZP_02382023.1| type III secretion exporter [Burkholderia ubonensis Bu]
          Length = 343

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 152/340 (44%), Gaps = 4/340 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + PS+K++ +A  +G+ P S E    +  +   + L          +     ++  +
Sbjct: 3   EKNQKPSAKRLREAREKGDVPKSAETISSAFFVGACVALAVGLGALFERLQGLFRLVFDA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A        + +  L+   +     L    +   +M G+ +  +Q   V+  + + P   
Sbjct: 63  AGAADP--GARLAALVGSAARDWMTLSAEIVGAGLMLGLLAGFVQVGGVMAWSRLVPQLS 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++  EG+K + S+ N+VN +K  +K +L+   +   + E+    +      P SIL   
Sbjct: 121 RLNPAEGLKNMASLRNVVNLVKMLLKTVLLVATLGWLIVESLDPAVQSGFTRPMSILALI 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +     L    + ++DI   +H++  K+KMS  E++ E K   G+P I+ +++ 
Sbjct: 181 VKLLMLLFGWAALVYVVMAIIDIVHQHHEFNKKMKMSIDEVRREHKDDEGDPHIQAKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +AR      + +    A++++ +    A+AL Y       P ++A+G+   A+++ ++A 
Sbjct: 241 LARELQYASLQDRIDFASVVVYSS-RVAVALYYG-GMGSLPWVLARGEGEAAERIVRLAR 298

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +   P      LA++L+   P N  I P  ++ VA L+  
Sbjct: 299 DALRPTLANVGLAQALYDSTPENGTIQPRHFREVAALLKW 338


>gi|206563886|ref|YP_002234649.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092677|gb|AAL59406.1| BcscU [Burkholderia cenocepacia]
 gi|28394258|gb|AAO31733.1| BcscU [Burkholderia cenocepacia]
 gi|198039926|emb|CAR55904.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 343

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 158/348 (45%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      + P++K++ +A  +G+ P S E    +  +   + L          + +
Sbjct: 1   MAEKD------QKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGSLFARLQA 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++  +         + +  L+   +   + L    +   ++ G+ +  +Q   V+  
Sbjct: 55  LFRLVFDAVGAADP--AARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R++  EG+K ++S+ NLVN  K  +K  L+   +   + E+    +      
Sbjct: 113 SRLVPQLSRLNPAEGMKNLWSLRNLVNLAKMLLKTALLVATLGWLIVESLDPSVQSGFTR 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SIL      +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P
Sbjct: 173 PVSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ +++ +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A
Sbjct: 233 HIQAKRRQLAREVQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAA 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++ ++A +   P      LA++L++  P N  I P  ++ VAQL+  
Sbjct: 291 ERIVRLARDALRPTLANVGLAQALYETTPENGTIQPQHFREVAQLLKW 338


>gi|313634400|gb|EFS00988.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL N1-067]
          Length = 303

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 147/258 (56%)

Query: 89  LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
           +   ++++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  LV  
Sbjct: 35  MEFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGLVEV 94

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           +K+ + I L+  +  I   ++  T++ +   N    L   F   + V + + L IA + +
Sbjct: 95  VKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSLKQIFSLFKNVXLALFLVIAVIGL 154

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
           LD  +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT +
Sbjct: 155 LDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFV 214

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + NPTH ++ +RY + ++ AP L+AKG++ +A  +R++A    +P+     LARS++   
Sbjct: 215 VNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTT 274

Query: 329 PINSAIPPVFYKAVAQLI 346
             +  I    YK V +++
Sbjct: 275 NPDEYIQEDLYKDVIEVM 292


>gi|238785152|ref|ZP_04629146.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri
           ATCC 43970]
 gi|238713967|gb|EEQ05985.1| Type III secretion protein, YscU/HrpY family [Yersinia bercovieri
           ATCC 43970]
          Length = 332

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 138/314 (43%), Gaps = 5/314 (1%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
            S E +    ++  + Y L       Y++     VL+    ++  + ++  +  +    L
Sbjct: 3   KSVEITSGLQLVVLVTYFLLTG----YTLVEQAKVLIRDTIEQLHQPLTMALAHIGSECL 58

Query: 90  SASRLVIPGLL-LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
           +    ++  L    ++  I S   Q  P++    V+   + ++     K+++S+ +L   
Sbjct: 59  AVLLHIMGILGGALVLITIISGFAQVGPLMATKAVEFKGEHINPINNAKQLFSLRSLFEL 118

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
            KS +K+ ++  I    L     ++           +      +  +L  ++      ++
Sbjct: 119 TKSLLKVGVLTLIFGYLLMHYAASLGYLAYCGSQCAIPVFATLMGWLLGALIACYMVFSL 178

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
           +D  +  +    +LKMS +E+K E K+S G+P IK +++ + +        +   RAT +
Sbjct: 179 MDYAFQRYNTMKQLKMSLEEVKREYKESDGDPHIKQKRRQLQQEVQSGSFAKNVQRATAV 238

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + NPTH+A+ L Y   +   PV++ KG    A  + K+A +  IP+ E  +LAR+L   V
Sbjct: 239 VRNPTHFAVCLLYHPEDAPLPVVIEKGHGERAALIIKLAEQQGIPVVENIALARALHHGV 298

Query: 329 PINSAIPPVFYKAV 342
                IP  F++ V
Sbjct: 299 ACGETIPEQFFEPV 312


>gi|183600583|ref|ZP_02962076.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827]
 gi|188019860|gb|EDU57900.1| hypothetical protein PROSTU_04169 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 157/346 (45%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI+D+  +G +  S+++     ++  +  +    +  ++ +   +  +L S
Sbjct: 3   EKTEKPTEKKIKDSAKKGQSFKSKDSVAALVLVVSVYVIT--GTTSLFEIAGLMKRILLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                +        LL     +  ++ IP LL   + G    L+Q    L    +K  F 
Sbjct: 61  PYNININ------ILLREFIGAFLKIAIPVLLACFISGAILSLLQSRFRLATEAIKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++   GIK+I+S+N+L   +K+F+ +I+      +        +     +  + ++Y  
Sbjct: 115 KLNPISGIKKIFSLNSLKELIKAFLYLIVFSISAMVFFILWRHDIFLLYRSTINGVIYQW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                  +++ L     + ++D+   +  +   LKM KQE+K E K + G+P +K+ +K 
Sbjct: 175 VGLCATFVVVFLAVALFIILVDVVTEFFLFIKGLKMEKQEVKKEYKDNEGDPHLKSARKG 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +  ++      +T ++ NPTH A+ + Y       P L+ K   L AK + + A 
Sbjct: 235 LHQEILSEEVKSNVRNSTFVMANPTHIAMLIYYNNDIAPLPFLLFKSHGLQAKMIVRYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +  +P+  +  LAR +++    +S I     + V ++I  +   ++
Sbjct: 295 QQGVPVVRDIPLARKIWRYYRKDSFIDEHGLQDVMRIINWLIRIEL 340


>gi|91791412|ref|YP_561063.1| type III secretion exporter [Shewanella denitrificans OS217]
 gi|91713414|gb|ABE53340.1| type III secretion exporter [Shewanella denitrificans OS217]
          Length = 352

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 169/349 (48%), Gaps = 8/349 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           + ++K+E  S  K+ +A   G    S E + +  +L  L Y   F       + S +   
Sbjct: 2   SDEHKSEQASQYKLNEARKRGQLAKSMELNAWVLVLISLAYFYLFSESLAKELMSVISRY 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L       + +  + + +   +    + L++P   + ++  I   ++    V +   + P
Sbjct: 62  LQILGSVDIRN--NFMLIAFDIFYPLAVLLVPFFSILVVASIVINVLLNGFVFSFEPLSP 119

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            F++++  +G+K+I+S  NL  F+K  +K+ LV     +        ++    ++  S+L
Sbjct: 120 KFEKLNPVKGLKKIFSKKNLFEFIKQTIKLFLVALCGYLLFYGVVERLIIASQSHVSSLL 179

Query: 186 YHAFFT-VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
             A      ++   +LL I  L  LD+ ++   +  ++ MS +E+++E K+  G+P IK+
Sbjct: 180 GMALSQETLRLSFYLLLTIFPLIALDVLFTRWDFKKQMMMSHREVREEYKKKEGDPQIKS 239

Query: 245 RQKSIARSRIRHKM-MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
           ++K + +   +  + +     A +II NPTH ++AL++     ++P++VA G  ++ K +
Sbjct: 240 KRKEVQKELAKKLIALGKVKEADVIINNPTHISVALKFDPLTMNSPIVVASGSGVLGKFI 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           R+IA +H++      SLAR L+KQ+ I   +P  ++      +  IY K
Sbjct: 300 RRIAVKHSLLQVTNISLARRLYKQLAIGQPLPAEYFDE----LAPIYRK 344


>gi|134294009|ref|YP_001117745.1| type III secretion exporter [Burkholderia vietnamiensis G4]
 gi|134137166|gb|ABO58280.1| type III secretion exporter [Burkholderia vietnamiensis G4]
          Length = 342

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 154/340 (45%), Gaps = 4/340 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K + P++K++ +A  +G+ P S E    +  +   + L          + +   ++  +
Sbjct: 3   EKNQQPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGLGTLFARLQALFRLVFDA 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A        + +  L+   +   + L    +   ++ G+ +  +Q   V+  + + P   
Sbjct: 63  AGAADP--AARLAVLVDGAARDWALLSAQIVAAGLLAGLLAGFVQVGGVMAWSRLVPQLS 120

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+    +      P SIL   
Sbjct: 121 RLNPAEGLKNMWSMRNLVNLAKMLLKTVLLVATLGWLIVESLDPSVQAGFTRPVSILALI 180

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +     L    + ++DI    H++  K+KMS  E++ E K+  G+P I  +++ 
Sbjct: 181 VKLLMLLFGWAALIYVVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDPHIAAKRRQ 240

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +AR      + +    A++++ +P   A+AL Y       P ++A+G+   A+++ ++A 
Sbjct: 241 LAREAQFAALPDRIGYASVVVYSP-RVAVALYYG-GIGSLPWVLARGEGEAAERIVRLAR 298

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +   P      LA +L++  P N  I    ++ VAQL+  
Sbjct: 299 DALRPTLANVGLAHALYETTPENGTIQQQHFREVAQLLKW 338


>gi|123443724|ref|YP_001007695.1| surface presentation of antigens protein SpaS [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090685|emb|CAL13561.1| putative type III secretion apparatus protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 374

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 149/346 (43%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D+  +G +  S++      +++    +  F    +Y + S L  +L S
Sbjct: 3   EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVSGAFAISGF--SSLYGLGSLLQRILLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   +E       LL  L     + V+P LL   + G    L+Q    L    VK  F 
Sbjct: 61  PSDIGVE------ALLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G K+I+++ +L   +K+F+ +++  T   +        +        + ++   
Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                  +++ L     + ++D    +  +   LKM KQE+K E K + G+P IK+ ++ 
Sbjct: 175 AHLCITFIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHIKSARRG 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +   +      +T ++ NPTH A+ + Y       P L+ K + L AK +   A 
Sbjct: 235 LHQEILSEDVKSNVRSSTFVMANPTHIAMVIYYNGDIAPVPYLMMKTRGLQAKAVIAYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
              +P+  +  +AR L++    +S I       V  +I  +   ++
Sbjct: 295 SQGVPVVRDIPVARQLWRNYCKDSFINDQGLDDVMHIINWLVRVEL 340


>gi|149179491|ref|ZP_01858040.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797]
 gi|148841678|gb|EDL56092.1| flagellar biosynthetic protein FlhB [Planctomyces maris DSM 8797]
          Length = 323

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 152/314 (48%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
            ++     +L+FF+  + S   +L  +  +       D   ++     +        +  
Sbjct: 1   GMMLATAAVLYFFAVRLSSDMKNLMEVSLTTPVWLRVDQPLLIERCESIIELFLEGTLVM 60

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
           +++  +  +   ++Q   ++  + ++  ++R++  EG KRI SI  LV    S  KI L+
Sbjct: 61  MVVLFVSAVFLNIVQVGFMMTPDVLQLKWERLNPIEGAKRIISIRGLVKLGVSLGKISLL 120

Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
             I        +   L  + A P +IL   F +  ++ +++ L +  L  LD  +   + 
Sbjct: 121 VLIAVWFSYLVFPGFLGLMGAPPETILRDIFNSTIELGLLLALALIILGGLDYAFQKWKH 180

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
              L MSKQEI++E+K   G+P+I+ R++   R     + +     A ++ITNPTH ++A
Sbjct: 181 EKDLMMSKQEIREEMKSMDGDPLIRQRRREAHRKLAMSQELSKVESADVVITNPTHISIA 240

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           ++Y      APV+VAKG   IA ++RKIA EH IPI E  +LAR +++ V     IP   
Sbjct: 241 IKYDPESMPAPVVVAKGAGEIAFQIRKIANEHGIPIIERKALARQMYRDVKTGQEIPFEL 300

Query: 339 YKAVAQLIYKIYHK 352
           Y+   +++  +Y  
Sbjct: 301 YEVFVEIMAYVYSL 314


>gi|85060059|ref|YP_455761.1| surface presentation of antigens protein SpaS [Sodalis glossinidius
           str. 'morsitans']
 gi|45504778|gb|AAS66868.1| SpaS [Sodalis glossinidius]
 gi|84780579|dbj|BAE75356.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 352

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 146/319 (45%), Gaps = 8/319 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ K++ DA  +G A  SR+  +   +L  + +L  F S  + S+      ++  
Sbjct: 3   NKTEKPTPKRLRDAAKKGQAFKSRDVIIACMMLCGVCWLTSFTS--LESLMDLYRQMVVG 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                L    +       L  +A ++++P + + ++      L+Q   +L     K +F+
Sbjct: 61  NFSLSLTAYRNA------LMFTALQILLPIIAMGIVASALPLLLQTGFMLATRAFKLNFQ 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   GIK+I+S+    + +K+ + +      + I    +   + + + ANP  I+   
Sbjct: 115 ALNPTRGIKKIFSLRTAKDCVKALLYLAAFAIALMIVWRTHRQLLFEQLFANPQDIVAIW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  LL I  + +LDI   Y      LKM KQE++ E+K+  G+P IK+R++ 
Sbjct: 175 RQLLMSLVLTCLLCIVCIVILDIVAEYFLHLRSLKMDKQEVRREMKEQEGDPEIKHRRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
                +  +       + +II NPTH A+ + +       P +    +N  A  +R  A 
Sbjct: 235 AHMEILSEQTQADIKGSQLIIANPTHLAVGIYHNPDLTPLPFISVLERNQRALAVRDYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQ 327
           +  + + E+  LAR ++  
Sbjct: 295 KVGVSVIEDVQLARRIYYT 313


>gi|255024132|ref|ZP_05296118.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           J1-208]
          Length = 288

 Score =  258 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 157/292 (53%), Gaps = 5/292 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L    +     ++++        +   ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQPPK-----LANMESYSLFYVMEFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
              F   +   + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K R
Sbjct: 177 GQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQR 236

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           Q+SIAR  ++  + +  + AT ++ NPTH ++ +RY +T++ AP L+ KG++
Sbjct: 237 QRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTKDHAPKLLVKGED 288


>gi|114762169|ref|ZP_01441637.1| flagellar biosynthetic protein FlhB [Pelagibaca bermudensis
           HTCC2601]
 gi|114545193|gb|EAU48196.1| flagellar biosynthetic protein FlhB [Roseovarius sp. HTCC2601]
          Length = 330

 Score =  258 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 144/314 (45%), Gaps = 1/314 (0%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL-LTHLSLSASRL 94
             ++ L  L   L      +  +   +   +    +      + +       +  +  + 
Sbjct: 2   TAAAYLGLLATGLSIGGGAVLRLGEAMLPFVEHPEKLGSLFFNGMATAPAATVLGAVLKP 61

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
           V+P L +     + +    R  V   + + P   R+S  E  +  Y    L  F+KSFVK
Sbjct: 62  VLPWLAVPGAVVLCALFATRGLVFAPSRLAPKASRLSPMENARNKYGRRGLFEFLKSFVK 121

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
           + +   ++ + L+  Y  ++  +              + ++L +  +    +  +D  W 
Sbjct: 122 LTVYSVVLGLFLSSRYDLIIGVLRGAAPDAAELMLNLMLQLLGIAAVVALCIGAVDYLWQ 181

Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274
             +   + +MS++E++DE K++ G+P+ K ++++ A+   + +MM    RA ++I NP+H
Sbjct: 182 RAEHLRRNRMSQKELRDEHKEAEGDPMFKQQRRARAQEIAQTQMMADVPRADVVIVNPSH 241

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           YA+AL + +   DAP+ VAKG + IA+++R++A +  +P+  +P  AR+L     I   I
Sbjct: 242 YAVALSWSRKPGDAPICVAKGVDEIARRIREVAEDAGVPLHSDPPTARALHATTRIGEQI 301

Query: 335 PPVFYKAVAQLIYK 348
            P  Y+ VA  I  
Sbjct: 302 APEHYRPVAAAIRF 315


>gi|254255060|ref|ZP_04948377.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
 gi|124899705|gb|EAY71548.1| Flagellar biosynthesis pathway component FlhB [Burkholderia dolosa
           AUO158]
          Length = 392

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 155/344 (45%), Gaps = 9/344 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           +  +KTE  + KK  D+   G    +R+A +   +L  +  +       I +V  D+   
Sbjct: 2   SAQSKTEEATPKKRRDSAERGQILKARDAVVACVMLCGVFVVSKMSLHEIGAVMIDMMQN 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                             +  L ++  ++V P LL+ ++      L+Q   VL    +K 
Sbjct: 62  GFDVDTSS---------YVKSLLVACLKVVAPVLLVCILAAAVPSLMQSKFVLATKALKI 112

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +F+ ++   G K+I+++  + +F+KS + +++    ++I    N   +L    ++ H ++
Sbjct: 113 NFEALNPVRGFKKIFNLRTVKDFVKSLLYLVVFSVAVSIVWVRNKEKLLAQFYSDLHGVV 172

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 +  +++  L     + +LD+         +L+M+K+E+K E K++ G+P IK R
Sbjct: 173 GLWKDLMVDLVLTCLGCALVILILDVLVEMLIHRKELRMAKEEVKRERKENEGSPEIKGR 232

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +K + +  +  +       + +II NPTH A+ + +  +    P++    +N  A  +R+
Sbjct: 233 RKEMHQELLSEQDKHDIQNSKMIIANPTHVAVGIYFNPSHLPYPLVSISERNQRALAVRR 292

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            A +  +P+  +  LAR ++K       +     + V +L+  +
Sbjct: 293 YAEKIGVPVIVDVPLARQIYKSHKRYEIVSLDVLEPVVRLMVWL 336


>gi|262166221|ref|ZP_06033958.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223]
 gi|262025937|gb|EEY44605.1| flagellar biosynthesis protein FlhB [Vibrio mimicus VM223]
          Length = 240

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 122/215 (56%)

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++ + + V  +KS +K++LV  +    +  +   +           ++HA   +   +++
Sbjct: 1   MFGLQSWVELLKSILKVMLVAGVAFYLIEASQKDLFQLSLDVYPQNIFHALDILLNFVLL 60

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           I   +  +  +DI +   Q  ++LKM+KQE+KDE K + G P +K R + + R   + +M
Sbjct: 61  ISCSLLVVVAIDIPFQIWQHANQLKMTKQEVKDEYKDTEGKPEVKGRIRMLQREAAQRRM 120

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           M A  +A +IITNP H+++ALRY Q  + APV++AKG + +A K+R+IA E++I I   P
Sbjct: 121 MAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREIAREYDIAIVPAP 180

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            LAR+L+    +   IP   + AVAQ++  ++  K
Sbjct: 181 PLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLK 215


>gi|238898600|ref|YP_002924281.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466359|gb|ACQ68133.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 349

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 142/322 (44%), Gaps = 9/322 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ KK++D+  +G +  +++  +   +LA + YL+ F S       S+L  L 
Sbjct: 2   SSNKTEKPTQKKLKDSAKKGQSFKTKDFIIACLMLAGVQYLISFAS------FSELMFLY 55

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                   E    I      +     ++ +P LLL +       L+Q   +L    +K +
Sbjct: 56  KEIISFNFE--YDIHRYTISVLSIGFKIFLPILLLCIFCSALPSLLQTGFLLATKAIKLN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKI-ILVGTIITISLTENYFTMLDFISANPHSIL 185
              ++  +G K+I+S+    + +KS + +      ++ +  T+          ++P+ I 
Sbjct: 114 LGALNPTKGFKKIFSLRTAKDAVKSVLYLGTFFVAVLVVWNTKRGVLFQQLHGSSPYEIT 173

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ +L   L  I  + +LD    Y      LKM KQE+K E+K+  GNP IK R
Sbjct: 174 MVWGQLLQSILWTCLGCIVIILILDALAEYFLHIKDLKMDKQEVKREMKEQDGNPEIKGR 233

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           ++ +    +  ++      +  II NPTH A+ +         P +     N  A  +R 
Sbjct: 234 RRELHMEILSEQIKSDIKNSQCIIANPTHIAVGIYVNPDTVMMPFISVLETNQKALAVRA 293

Query: 306 IAYEHNIPIFEEPSLARSLFKQ 327
            A +  +P+ +  SLAR+++K 
Sbjct: 294 YAKKVGVPVIQNISLARAIYKN 315


>gi|317121832|ref|YP_004101835.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885]
 gi|315591812|gb|ADU51108.1| type III secretion exporter [Thermaerobacter marianensis DSM 12885]
          Length = 477

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 156/330 (47%), Gaps = 2/330 (0%)

Query: 26  GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED--ISHIVFL 83
           G    S + +    +LA               V      L ++       D  ++    L
Sbjct: 88  GEVARSADLTAALLLLAAAALAGVLVPAAAREVARLTRHLWSTLPAGVPGDWTVADAAGL 147

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
                L+      P  L+      G+  +Q   +  +  V P ++R++   G++R+ S  
Sbjct: 148 GRVALLATLAAAAPLALVGWAVSAGAGFVQTGGLFQIGLVAPRWERINPLAGLQRLVSRR 207

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            LV  +K+ VK+ ++  ++  +L +    +L        ++L  A   V  ++    L  
Sbjct: 208 ALVELLKAPVKLAVLVAVLGPALVQAAGQLLAATGTPAEALLPAAARAVHGLMWRGALAY 267

Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATS 263
             + + D  + + +    L+M+ QE K + K++ G+P+++ R +   R   R +M++   
Sbjct: 268 LVVALADYAYQWWEHQQSLRMTVQEWKQDQKEAEGDPVLRQRLRQRQRQLARRRMLQEVP 327

Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
           R  +++TNPTH A+ALRY      APV+VAKG  ++A ++R +A  H +P+ EEP+LAR+
Sbjct: 328 RVDVVVTNPTHVAVALRYDPARMGAPVVVAKGLGVLALRIRAVAEAHGVPVMEEPALARA 387

Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+K V +   IPP  Y AVA+++  ++  +
Sbjct: 388 LYKAVEVGQEIPPALYVAVAEVLAFVWRLR 417


>gi|260775664|ref|ZP_05884560.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608080|gb|EEX34249.1| type III secretion protein HrpY [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 352

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 140/338 (41%), Gaps = 7/338 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI+D+   G    + +     + +     L+      +  + + +++ +  
Sbjct: 3   EKTEKPTQKKIQDSRKRGQVAQTPDIPKLLACVLTFEVLVACSEWLMAELKTLVYMPITL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q        ++ +  H+      +VIP   +     +     Q   +     +K  F 
Sbjct: 63  FNQPFEHGFLSVLEVAKHVLFLFILIVIP---VSFFAALIGRWGQFGFLFAPEALKLDFN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++    +K+++S   L   + +  K IL+  +  I L +    +    +     +   A
Sbjct: 120 KLNPFSQLKQLFSGQKLTEVLNNIFKSILIFVVFYILLNDLAHAVFKLPNLPLDRMWLAA 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                 V  + LL +    +LD          +LKM KQE+K E K S G+P +K++++ 
Sbjct: 180 IDLFIYVARVCLLLLLAPAILDFALKKFFHLKQLKMDKQEVKQEFKDSEGDPFVKSQRRQ 239

Query: 249 IARSRIRHKMM---EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +    +         +     +++ NPTH+A+ L Y       PV+ AKG++  A ++ +
Sbjct: 240 LGMELVEGSPQTTNASMDEMDMLVVNPTHFAVGLHYNPGVTPLPVVGAKGKDREALELIQ 299

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            A    +P+     LAR+L++Q  + S I      AVA
Sbjct: 300 QADHSGVPVIRYVWLARTLYQQ-ELGSYINRDTLDAVA 336


>gi|170767115|ref|ZP_02901568.1| EscU protein [Escherichia albertii TW07627]
 gi|170124553|gb|EDS93484.1| EscU protein [Escherichia albertii TW07627]
 gi|315617516|gb|EFU98122.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 317

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/311 (23%), Positives = 144/311 (46%), Gaps = 3/311 (0%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
                L    +   + +     +   ++  + S  +  L  I  I   L  +       +
Sbjct: 2   AAVQSLILFSFFSLYGASFFIDIVGLVNTAINSLNRPFLYAIREI---LGSVLNILLLYI 58

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +P  L+  +  + + + Q   +  +  +KPS +++S++  +K I+S+ ++    KS  K+
Sbjct: 59  LPISLIVFVGTVATGVSQTGFIFAVEKIKPSAQKISVKNNLKNIFSVKSIFELFKSVFKL 118

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
           +++  I            ++F + N +  L    F V  +   +L      +V D  +  
Sbjct: 119 VIIALIFYFMGHSYASEFINFTNLNAYQTLVLVAFFVFLLWKGVLFGYLLFSVFDFWFQK 178

Query: 216 HQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY 275
           H+   K+KMSK E+K E K + GNP IK  ++ +        +     ++T+I+ NPTH 
Sbjct: 179 HEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNPTHI 238

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +     I 
Sbjct: 239 AICLYYKLGETPLPLVIETGKDAKALQIIKLAERYDIPVIEDIPLARSLYKNINKGQYIT 298

Query: 336 PVFYKAVAQLI 346
             F++ VAQLI
Sbjct: 299 EDFFEPVAQLI 309


>gi|238757869|ref|ZP_04619051.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC
           35236]
 gi|238703854|gb|EEP96389.1| Secretion system apparatus protein ssaU [Yersinia aldovae ATCC
           35236]
          Length = 304

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 1/294 (0%)

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG-IGSYLIQRIP 116
           +   +  L+  A     +  S+ V ++T    SA  L+       +    I S L Q   
Sbjct: 1   MIQRVAGLMLLAAGLINKPFSYAVGVMTRALFSAGGLMFALFGGMLAAATIASVLAQVGF 60

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDF 176
           ++    +    +R+S    +K+I+S+ +L+  +KS +K+IL+  I          T    
Sbjct: 61  MVASKALGFKAERISPVSNLKQIFSLRSLIELIKSCLKVILLCLIFVYLFRYYAPTFQAL 120

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQS 236
              +P   +      VR +   +L F   L V D  +  H    + +MSK+++K E K  
Sbjct: 121 PYCDPACAIPVFSTFVRWMWYALLTFYVVLGVFDYAFQSHNTLKQQRMSKEDVKQEHKDM 180

Query: 237 YGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQ 296
            G+P  K R++ + R      + +   ++ +++ NPTH A+ L Y   E   P ++ KG 
Sbjct: 181 EGDPQTKKRRRELQREMQSGSLAQNVRQSAVVVRNPTHIAVCLGYDPVEMPVPTILEKGT 240

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           +  A+ +  +A   +IP+ E  +LAR LF  V     IP   ++ VA L+  + 
Sbjct: 241 DARAEHIVSLALRESIPVVENIALARQLFHDVKCGEMIPESQFEPVAALLRLVL 294


>gi|75764710|ref|ZP_00744124.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487802|gb|EAO51604.1| Flagellar biosynthetic protein flhB [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 271

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 144/265 (54%)

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
           + +   ++  P L+L   F + +Y+IQ   + +   +KP   R++ +    R++S  +LV
Sbjct: 1   MGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKPKASRINPKNYFTRLFSRKSLV 60

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
           + +KS   + L+G +  +   +N   ++  I  N  + L      ++ + + IL+ +  L
Sbjct: 61  DILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASLTEIIRQIKFIFLAILIILIVL 120

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
           +++D  +   ++   +KM K+E+K E K + G+P +K ++K+   + ++  + +    AT
Sbjct: 121 SIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGKRKNFMHAILQGTIAKKMDGAT 180

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
            I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R +A E  IP+ E   LARSL+ 
Sbjct: 181 FIVNNPTHISVVLRYNKHIDAAPIVVAKGEDELALYIRTLAREQEIPMVENRPLARSLYY 240

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYH 351
           QV  +  IP   Y AV +++  +  
Sbjct: 241 QVEEDETIPEDLYVAVIEVMRYLIQ 265


>gi|213618546|ref|ZP_03372372.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 261

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 130/262 (49%), Gaps = 2/262 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKNRQKSIARSRIRHKMMEAT 262
            +K + + + R+  + +MME  
Sbjct: 239 HVKGKIRQMQRAAAQRRMMEDV 260


>gi|258611828|ref|ZP_05711674.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           R2-503]
 gi|258606467|gb|EEW19075.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           R2-503]
          Length = 300

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 146/259 (56%)

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            +   ++++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V 
Sbjct: 31  LMEFGKVLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVE 90

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
            +K+ + I L+  +  I   ++  T++ +   N    L   F   +   + + L IA + 
Sbjct: 91  VVKALLLITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIG 150

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
           +LD  +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT 
Sbjct: 151 LLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATF 210

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           ++ NPTH ++ +RY +T++ AP L+ KG++ +A  +R++A    +P+     LARS++  
Sbjct: 211 VVNNPTHISVVMRYDKTKDHAPKLLVKGEDELALFIRQVADTDEVPMITNRQLARSIYYT 270

Query: 328 VPINSAIPPVFYKAVAQLI 346
              +  I    YK V +++
Sbjct: 271 TNPDEYIQEDLYKDVIEVM 289


>gi|15088606|gb|AAK84117.1|AF369954_15 YsaU [Yersinia enterocolitica]
 gi|16799075|gb|AAF82331.2|AF005744_10 YsaU [Yersinia enterocolitica]
          Length = 374

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 150/346 (43%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D+  +G +  S++      ++A    +  F    +Y + S L  +L S
Sbjct: 3   EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAISGF--SSLYGLGSLLQRILLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   +E       LL  L     + V+P LL   + G    L+Q    L    VK  F 
Sbjct: 61  PSDIGVE------ALLDKLYSLFLQAVVPVLLACFLPGAIISLLQSRFRLATEAVKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G K+I+++ +L   +K+F+ +++  T   +        +        + ++   
Sbjct: 115 HLNPISGFKKIFALRSLKELVKAFLYLLVFATSAAVFFIFWRQEIFMLYRTTINGMISQW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                  +++ L     + ++D    +  +   LKM KQE+K E K + G+P IK+ ++ 
Sbjct: 175 AHLCITFIMVFLAVALLILLIDTLTEFFLFMKDLKMEKQEVKKEYKDNDGDPHIKSARRG 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +  ++      +T ++ NPTH A+ + Y       P L+ K + L AK +   A 
Sbjct: 235 LHQEILSEEVKSNVRGSTFVMANPTHIAMVIYYNDDIAPLPYLMMKTRGLQAKAVIAYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
              +P+  +  +AR L++    +S I       V  +I  +   ++
Sbjct: 295 SQGVPVVRDIPVARQLWRNYRKDSFINDQGLDDVMHIINWLVRVEL 340


>gi|213162120|ref|ZP_03347830.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 272

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 121/262 (46%)

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
           S +  ++      ++  +GS  +Q   V+    +    + ++     K+I+S++++V   
Sbjct: 1   SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELC 60

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
           KS +K+I++  I          T            +      ++ + + ++ F   + +L
Sbjct: 61  KSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGIL 120

Query: 210 DIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
           D  + Y++    LKMSK ++K E K   G+P +K R++ +        + ++  ++  ++
Sbjct: 121 DYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVV 180

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ E   LARSLF +V 
Sbjct: 181 RNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE 240

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
               IP   ++ VA L+  +  
Sbjct: 241 RGDKIPETLFEPVAALLRMVMK 262


>gi|225619293|ref|YP_002720519.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae
           WA1]
 gi|225214112|gb|ACN82846.1| flagellar biosynthesis protein FlhB [Brachyspira hyodysenteriae
           WA1]
          Length = 400

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 179/353 (50%), Gaps = 6/353 (1%)

Query: 6   APDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
             + +TE P+ +K   A  E G    S E +    +   +  +    +   ++V      
Sbjct: 41  EDEGRTELPTERKKRKAREEEGRVVNSAEINQTLVLAVSIAVIALLTTYFTHTVAQFFIT 100

Query: 65  LLASATQRKLE-DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +L   +      + +    +L  + +  ++     + + ++ G+G  L Q   +     +
Sbjct: 101 VLNKISNADASINNTAYTDMLLEIFVLLAKTAGIIMAVALVVGVGVNLAQTQFLFTTKKL 160

Query: 124 KPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           KP+FKR++       +R++ S  NL+N  K   K+I++  +   ++      + + I+  
Sbjct: 161 KPNFKRIAPTWSNFKERVFISSQNLMNLAKILFKMIVISLLTFTTIYGKRTELFNMINMG 220

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               +   FF V ++L  +++F+  ++  D  +   Q+ + LKM+K E+K+E K+  G+P
Sbjct: 221 LSQAMNLFFFIVLEMLAKVIIFMIIVSAFDYFFQKRQYINSLKMTKHEMKEEFKEMEGDP 280

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K++ + +AR  +   M+++   A ++ITNPTH+A+AL+Y    + AP++ AKG + IA
Sbjct: 281 LVKSQLQEMARKIVSRTMLKSVPEADVVITNPTHFAVALKYENG-DYAPIVTAKGADHIA 339

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+++IA ++++ I E   LAR L+  V +   IP   +  V++++ ++Y  +
Sbjct: 340 LKIKEIARQNDVQIVENKPLARELYYNVELGQYIPEKLFHVVSRILGEVYRIR 392


>gi|238793341|ref|ZP_04636967.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia
           ATCC 29909]
 gi|238727310|gb|EEQ18838.1| Type III secretion protein, YscU/HrpY family [Yersinia intermedia
           ATCC 29909]
          Length = 332

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 129/288 (44%), Gaps = 1/288 (0%)

Query: 56  YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL-LFMMFGIGSYLIQR 114
           Y++     VL+ S+  +  + ++  +  +    ++    ++  L    ++  I + + Q 
Sbjct: 25  YTLVDQAIVLIRSSISQLQQPLAMALARIGAECMAVVIHIMGILGGALILVTILAGIAQV 84

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
            P+L    V+   + ++     K+++S+ ++    KS +K+ ++  I    L     +  
Sbjct: 85  GPLLATKAVEFKGEHINPINNAKQLFSLRSVFELTKSLLKVGVLTLIFGYLLLHYAVSFG 144

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
                     +      +  +L  ++      +++D  +  +    +LKMS +EIK E K
Sbjct: 145 YLAYCGSRCAIPVFATLMSWLLGALVACYVVFSLMDYAFQRYNTMKQLKMSLEEIKREHK 204

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
            S G+P IK +++ +          +   R+T ++ NPTH+A+ L Y   +   PV++ K
Sbjct: 205 DSNGDPHIKQKRRQLQHEEQSGSFAKNVRRSTAVVRNPTHFAVCLFYHADDAPLPVVIEK 264

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
           G    A  +  +A E  IP+ E  +LAR+L + V     IP  F++ V
Sbjct: 265 GHGEQAALIIALAEEQGIPVVENIALARALHRDVACGDTIPEQFFEPV 312


>gi|208434682|ref|YP_002266348.1| flagellar biosynthetic protein [Helicobacter pylori G27]
 gi|208432611|gb|ACI27482.1| flagellar biosynthetic protein [Helicobacter pylori G27]
          Length = 335

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 160/325 (49%), Gaps = 3/325 (0%)

Query: 29  PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
           P S E      +LA LI +  FF   +   +     +L   +         +  L   L+
Sbjct: 2   PKSMEVVGVLGLLAGLISIFVFFIWWVDGFSEMYRHVLKDFSLD--FSKESVQELFNQLA 59

Query: 89  LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
                L++P L++ M+    S ++Q   +     ++P F +++   G+K ++S+  L++ 
Sbjct: 60  KDTFLLLLPILIILMVVAFLSNVLQFGWLFAPKVIEPKFSKINPINGVKNLFSLKKLLDG 119

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
               +K+ L   +     +     +      N    L         ++  +L     L  
Sbjct: 120 SLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKNKALLLISSLLFLFFVLAF 179

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
           +D+     Q+ + LKM+KQE+KDE KQ  GNP IK + + +      +KMM+   +A ++
Sbjct: 180 VDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVV 239

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +TNPTHYA+AL++   E+  PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V
Sbjct: 240 VTNPTHYAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDV 298

Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
            +N+AIP   ++AVA +  ++   +
Sbjct: 299 KLNAAIPEELFEAVAIVFAQVAKLE 323


>gi|296125237|ref|YP_003632489.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM
           12563]
 gi|296017053|gb|ADG70290.1| flagellar biosynthetic protein FlhB [Brachyspira murdochii DSM
           12563]
          Length = 399

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 181/355 (50%), Gaps = 6/355 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNE-GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDL 62
           +   + +TE P+ +K   A  E G    S E +    +   +  +    +    +V+   
Sbjct: 38  SPEDEGRTELPTERKKRKAREEEGRVVNSAEINQTLVLAVTIAVIALLTTYLTDTVSKFF 97

Query: 63  HVLLAS-ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
             +L   +T     ++  +  +   + +  ++     L + ++ G+G  L Q   +    
Sbjct: 98  MTILNKISTADATMNVLSLPDMFLEIVVLIAKTAGIVLAVALVVGVGINLAQTKFLFTTK 157

Query: 122 HVKPSFKRVSL--REGIKRIY-SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
            +KP+FKR++       +R++ S  NL+N  K   K++++  +   ++      + +  +
Sbjct: 158 KLKPNFKRIAPTWSNFKERVFVSSQNLMNLAKILFKMVVISFLTFTTIYGKSTELFNMTN 217

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                 ++  FF V ++L  +++F+  ++  D  +   Q+ + LKM+K E+K+E K+  G
Sbjct: 218 MELPQAMHLFFFIVLEMLAKVIVFMIIVSAFDYFFQRRQYINSLKMTKHEMKEEFKEMEG 277

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K++ + +AR  +   M++A   A ++ITNPTH+A+AL+Y    + APV+ AKG + 
Sbjct: 278 DPLVKSQLQDMARKIVSRTMLKAVPEADVVITNPTHFAVALKYENG-DYAPVVTAKGADH 336

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA ++++IA E+++ I E   LAR L+  V I   IP   +  V++++ ++Y  +
Sbjct: 337 IALRIKEIAKENDVQIVENKPLARELYFNVEIGQYIPEKLFHVVSRILGEVYRIR 391


>gi|313620092|gb|EFR91598.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378]
          Length = 260

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 140/249 (56%)

Query: 98  GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V  +K+ + I L
Sbjct: 1   VMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITL 60

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           +  +  I   ++  T++ +   N    L   F   +   + + L IA + +LD  +  + 
Sbjct: 61  LSYVAYIGFRDHLDTLISYTGQNWLYSLSQIFALFKNEFLALFLVIAVIGLLDFFYQRYD 120

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
           +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPTH ++
Sbjct: 121 YKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISV 180

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
            +RY +T++ AP L+ KG++ +A  +R++A    +P+     LARS++     +  I   
Sbjct: 181 VMRYDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQED 240

Query: 338 FYKAVAQLI 346
            YK V +++
Sbjct: 241 LYKDVIEVM 249


>gi|167820158|ref|ZP_02451838.1| type III secretion system protein [Burkholderia pseudomallei 91]
          Length = 318

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%)

Query: 57  SVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                +  L+  A      D  +  +   L      A   V+P L +  + GIG  ++Q 
Sbjct: 14  HFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQV 73

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              ++L  V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  + 
Sbjct: 74  GLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIA 133

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +  +P  +       + K L+++      +   D+      +  K+KM+K E+K E K
Sbjct: 134 GALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESK 193

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
              G+P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P +VAK
Sbjct: 194 NDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAK 253

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           G +  A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 254 GLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307


>gi|148261120|ref|YP_001235247.1| type III secretion exporter [Acidiphilium cryptum JF-5]
 gi|146402801|gb|ABQ31328.1| type III secretion exporter [Acidiphilium cryptum JF-5]
          Length = 335

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 159/322 (49%), Gaps = 3/322 (0%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           SRE +  +S+   L  ++         + + L      A    ++  + +   L    ++
Sbjct: 9   SREVATLASLGVALAVMIGVLPSSAERLANTLASAFTRAAT--VDSGAGLSRALWQAGMA 66

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           +  + IP      +  I   L+Q     N   +  +F R++   GI +++   NL    +
Sbjct: 67  SLGVFIPFAGAIALSAIVVSLLQTGFRTNWGAIGLNFARLNPLAGIGKLFGTPNLAASGQ 126

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S +K+  +G  + + +      +   +  +  ++L   F ++  +L   ++       +D
Sbjct: 127 SILKLAAIGAALYVVMDARLHGLEAMLLGSEKTLLAAIFGSIVAILSAAVMIQVVSGAVD 186

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
                +++ + +KMS+QE+KDE K++ G+P ++ R K+   +  +  +  A +RA ++IT
Sbjct: 187 FVLVRNRFSTSVKMSRQEVKDEQKETDGDPHVRARIKAARSALAKRSLNVAMARAAVVIT 246

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NPTHYA+AL Y   + +AP +VAKG +  A ++R +A E  IPI   P LAR+LF+Q  +
Sbjct: 247 NPTHYAVALEYRAGQAEAPKIVAKGADERAARIRDLAREARIPIVANPPLARALFQQ-DV 305

Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
            + I P  Y+AVA++I  I+  
Sbjct: 306 ETEILPEHYRAVAEIIAYIWKL 327


>gi|125657194|gb|ABN48682.1| FlhB [Burkholderia pseudomallei]
          Length = 335

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 136/307 (44%), Gaps = 1/307 (0%)

Query: 47  LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG 106
           +L   +P   +    L +L            +     L        +++ P  ++ +   
Sbjct: 1   MLVLLAPSWLAEFRALFLLELVDVTGDGALANAWSVALPVSIALFLKMIAPFFVVPLCVV 60

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           +GS L+    +L+   +KP F R++    + R+ S  +   F  S +K + +  ++    
Sbjct: 61  LGS-LLPGGWILSGAQLKPKFSRLNPMTNLGRLVSARHYGTFALSLLKALALIAMLAYLS 119

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
                  L          L   F       + +   +    + D+ +    +    +M+K
Sbjct: 120 ATTLAAFLRLQHLPLQEALTRGFGLTLDGALALAAVMLVFALADVPFQRFVFLRGQRMTK 179

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE K + G P +++R + + R   +  + +    A +++ NPTHYA+AL+Y     
Sbjct: 180 QEVKDEHKNAEGRPEVRSRIRQLQRQAAQRVLSKTVPSADVVVVNPTHYAVALKYDTNRA 239

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP ++AKG + +A  +R+IA EH + +   P LAR+++    +N  IP   Y+AVAQ++
Sbjct: 240 EAPFVIAKGVDDMALAIRRIAQEHGVEVLSLPPLARAIYDTSQVNQQIPAALYRAVAQVL 299

Query: 347 YKIYHKK 353
             +   K
Sbjct: 300 TYVLQLK 306


>gi|167724018|ref|ZP_02407254.1| type III secretion system protein [Burkholderia pseudomallei DM98]
          Length = 318

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 134/271 (49%), Gaps = 1/271 (0%)

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
            +   L      A   V+P L +  + GIG  ++Q    ++L  V P+   ++  EG+K+
Sbjct: 38  EMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEGLKK 97

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++S  + +  +K  VK ++V  +   ++   +  +   +  +P  +       + K L++
Sbjct: 98  LFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSRIFREILAKWLMV 157

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           +      +   D+      +  K+KM+K E+K E K   G+P++K  +K +AR       
Sbjct: 158 VAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKRLARELAAAPP 217

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
               + A  ++ NPTHYA+A+RY   E+  P ++AKG +  A  +R+ A + NIPI   P
Sbjct: 218 QHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVIAKGLDEAAIALRRAAQDANIPIIGNP 277

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 278 PVARALFR-IGVEEPVPEELFEIVAAILRWI 307


>gi|134282061|ref|ZP_01768767.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|237508812|ref|ZP_04521527.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei MSHR346]
 gi|254186853|ref|ZP_04893369.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|134246590|gb|EBA46678.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 305]
 gi|157934537|gb|EDO90207.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|235001017|gb|EEP50441.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei MSHR346]
          Length = 411

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|53722555|ref|YP_111540.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei K96243]
 gi|167923333|ref|ZP_02510424.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei BCC215]
 gi|217425128|ref|ZP_03456623.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|226195957|ref|ZP_03791543.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
 gi|254185170|ref|ZP_04891759.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|254301459|ref|ZP_04968903.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|81606433|sp|Q63K32|BSAZ_BURPS RecName: Full=Secretion apparatus protein BsaZ
 gi|52212969|emb|CAH39007.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|157811010|gb|EDO88180.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 406e]
 gi|184215762|gb|EDU12743.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1655]
 gi|217391733|gb|EEC31760.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 576]
 gi|225931850|gb|EEH27851.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei Pakistan 9]
          Length = 411

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|53716465|ref|YP_106123.1| surface presentation of antigens protein SpaS [Burkholderia mallei
           ATCC 23344]
 gi|67641434|ref|ZP_00440213.1| type III secretion system protein BsaZ [Burkholderia mallei GB8
           horse 4]
 gi|124382305|ref|YP_001025867.1| surface presentation of antigens protein SpaS [Burkholderia mallei
           NCTC 10229]
 gi|126446476|ref|YP_001077952.1| surface presentation of antigens protein SpaS [Burkholderia mallei
           NCTC 10247]
 gi|167004213|ref|ZP_02269980.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20]
 gi|254176483|ref|ZP_04883141.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
           10399]
 gi|254200989|ref|ZP_04907354.1| type III secretion system protein BsaZ [Burkholderia mallei FMH]
 gi|254204953|ref|ZP_04911306.1| type III secretion system protein BsaZ [Burkholderia mallei JHU]
 gi|254359072|ref|ZP_04975344.1| type III secretion system protein BsaZ [Burkholderia mallei
           2002721280]
 gi|81683780|sp|Q62B05|BSAZ_BURMA RecName: Full=Secretion apparatus protein BsaZ
 gi|205831285|sp|A2S1P8|BSAZ_BURM9 RecName: Full=Secretion apparatus protein BsaZ
 gi|206558177|sp|A3MCG6|BSAZ_BURM7 RecName: Full=Secretion apparatus protein BsaZ
 gi|52422435|gb|AAU46005.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
           23344]
 gi|126239330|gb|ABO02442.1| type III secretion system protein BsaZ [Burkholderia mallei NCTC
           10247]
 gi|147748601|gb|EDK55676.1| type III secretion system protein BsaZ [Burkholderia mallei FMH]
 gi|147754539|gb|EDK61603.1| type III secretion system protein BsaZ [Burkholderia mallei JHU]
 gi|148028259|gb|EDK86219.1| type III secretion system protein BsaZ [Burkholderia mallei
           2002721280]
 gi|160697525|gb|EDP87495.1| type III secretion system protein BsaZ [Burkholderia mallei ATCC
           10399]
 gi|238522374|gb|EEP85819.1| type III secretion system protein BsaZ [Burkholderia mallei GB8
           horse 4]
 gi|243060408|gb|EES42594.1| type III secretion system protein BsaZ [Burkholderia mallei PRL-20]
 gi|261826738|gb|ABM99347.2| type III secretion system protein BsaZ [Burkholderia mallei NCTC
           10229]
          Length = 411

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQSNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|167742987|ref|ZP_02415761.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|167828533|ref|ZP_02460004.1| type III secretion system protein [Burkholderia pseudomallei 9]
 gi|167906942|ref|ZP_02494147.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167923134|ref|ZP_02510225.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 318

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 140/295 (47%), Gaps = 3/295 (1%)

Query: 57  SVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
                +  L+  A      D  +  +   L      A   V+P L +  + GIG  ++Q 
Sbjct: 14  HFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQV 73

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
              ++L  V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++   +  + 
Sbjct: 74  GLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIA 133

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +  +P  +       + K L+++      +   D+      +  K+KM+K E+K E K
Sbjct: 134 GALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESK 193

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
              G+P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+  P ++AK
Sbjct: 194 NDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAK 253

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           G +  A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++  I
Sbjct: 254 GLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILRWI 307


>gi|126455636|ref|YP_001076109.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 1106a]
 gi|167850199|ref|ZP_02475707.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei B7210]
 gi|242313702|ref|ZP_04812719.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
 gi|254193747|ref|ZP_04900179.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|206558142|sp|A3P6Z9|BSAZ_BURP0 RecName: Full=Secretion apparatus protein BsaZ
 gi|126229404|gb|ABN92817.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106a]
 gi|169650498|gb|EDS83191.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei S13]
 gi|242136941|gb|EES23344.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1106b]
          Length = 411

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|76818361|ref|YP_335733.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 1710b]
 gi|254264647|ref|ZP_04955512.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
 gi|123597194|sp|Q3JL20|BSAZ_BURP1 RecName: Full=Secretion apparatus protein BsaZ
 gi|76582834|gb|ABA52308.1| surface presentation of antigens protein [Burkholderia pseudomallei
           1710b]
 gi|254215649|gb|EET05034.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 1710a]
          Length = 411

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|167915301|ref|ZP_02502392.1| type III secretion system protein [Burkholderia pseudomallei 112]
          Length = 312

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 140/302 (46%), Gaps = 3/302 (0%)

Query: 50  FFSPGIYSVTSDLHVLLASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
                       +  L+  A      D  +  +   L      A   V+P L +  + GI
Sbjct: 1   MLVAAADHFGDAMRALVNGALAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGI 60

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLT 167
           G  ++Q    ++L  V P+   ++  EG+K+++S  + +  +K  VK ++V  +   ++ 
Sbjct: 61  GGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIV 120

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
             +  +   +  +P  +       + K L+++      +   D+      +  K+KM+K 
Sbjct: 121 WLFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKD 180

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+K E K   G+P++K  +K +AR           + A  ++ NPTHYA+A+RY   E+ 
Sbjct: 181 EVKRESKNDEGDPLLKGERKRLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHP 240

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            P +VAKG +  A  +R+ A + NIPI   P +AR+LF+ + +   +P   ++ VA ++ 
Sbjct: 241 LPRVVAKGLDEAAIALRRAAQDANIPIIGNPPVARALFR-IGVEEPVPEELFEIVAAILR 299

Query: 348 KI 349
            I
Sbjct: 300 WI 301


>gi|167907134|ref|ZP_02494339.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei NCTC 13177]
          Length = 411

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|126443467|ref|YP_001063158.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 668]
 gi|206558186|sp|A3NLD7|BSAZ_BURP6 RecName: Full=Secretion apparatus protein BsaZ
 gi|126222958|gb|ABN86463.1| type III secretion protein, YscU/HrpY family [Burkholderia
           pseudomallei 668]
          Length = 406

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|259908635|ref|YP_002648991.1| surface presentation of antigens protein SpaS [Erwinia pyrifoliae
           Ep1/96]
 gi|224964257|emb|CAX55764.1| Export protein for peptides using the type III secretion system
           [Erwinia pyrifoliae Ep1/96]
 gi|283478607|emb|CAY74523.1| Surface presentation of antigens protein SpaS [Erwinia pyrifoliae
           DSM 12163]
          Length = 363

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 147/349 (42%), Gaps = 12/349 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK +D+  +G +   ++     ++++   +LL+       S  S    +L +
Sbjct: 3   QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLYGMD--FSSFISYFSKILLN 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                ++D       +  +     +L  P + +  + GI + L Q    +    +K +FK
Sbjct: 61  ENSVNIDDF------MLQMMYIFLQLSFPLIGVCCLSGIIATLFQTRFTIATQALKLNFK 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EGIK+I+S+  +  F+KS   +++        +T +    L    A    ++   
Sbjct: 115 ALNPVEGIKKIFSMRTVKEFIKSLCYLMVFLFTCYNFITNDLKHALVIHHAGIGQLIVSL 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K + + + +   +   D    Y      LKM K E+K E K+S GNP IK+ ++ 
Sbjct: 175 LSLTVKAVTIFIAYSLFVLCADFIMEYFLHVKDLKMDKHEVKQEHKESDGNPQIKSARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  + M A   +++++ NPTH A+A+ +       P +  +  N  AK     A 
Sbjct: 235 AHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRASNFKAKAALLYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354
           E  IP+     L R L+K     S I         AV  ++  +   +I
Sbjct: 295 EIGIPVVRNVLLTRRLYKSYVQYSFISINDDDL-MAVMDILIWLRQVEI 342


>gi|310767465|gb|ADP12415.1| surface presentation of antigens protein SpaS [Erwinia sp. Ejp617]
          Length = 363

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 147/349 (42%), Gaps = 12/349 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK +D+  +G +   ++     ++++   +LL+       S  S    +L +
Sbjct: 3   QKTELPTEKKRKDSAKKGQSLKIKDFITTVTLISGSYFLLYGMD--FSSFISYYSKVLLN 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                ++D       +  +     +L  P + +  + GI + L Q    +    +K +FK
Sbjct: 61  ENSVNIDDF------MLQMMYIFLQLSFPLIGVCCLSGIIATLFQTRFTIATQALKLNFK 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EGIK+I+S+  +  F+KS   +++        +T +    L    A    ++   
Sbjct: 115 ALNPVEGIKKIFSMRTVKEFIKSLCYLMVFLFTCYNFITNDLKHALVIHHAGIGQLIVSL 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K + + + +   +   D    Y      LKM K E+K E K+S GNP IK+ ++ 
Sbjct: 175 LSLTVKAVTIFIAYSFFVLCADFIMEYFLHVKDLKMDKHEVKQEHKESDGNPQIKSARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  + M A   +++++ NPTH A+A+ +       P +  +  N  AK     A 
Sbjct: 235 AHQELLSGEEMAAVRNSSVVMANPTHIAMAIYFNPQVASLPFIALRASNFKAKAALLYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354
           E  IP+     L R L+K     S I         AV  ++  +   +I
Sbjct: 295 EIGIPVVRNVLLTRRLYKSYVQYSFISINDDDL-MAVMDILIWLRQVEI 342


>gi|83716929|ref|YP_439036.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis E264]
 gi|167615593|ref|ZP_02384228.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis Bt4]
 gi|257142144|ref|ZP_05590406.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis E264]
 gi|123539589|sp|Q2T713|BSAZ_BURTA RecName: Full=Secretion apparatus protein BsaZ
 gi|83650754|gb|ABC34818.1| type III secretion system protein BsaZ [Burkholderia thailandensis
           E264]
          Length = 381

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 138/321 (42%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T         
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGALS-----APALVDLTRVAAEFTRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +          L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++ + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + ++D    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|188534034|ref|YP_001907831.1| surface presentation of antigens protein SpaS [Erwinia tasmaniensis
           Et1/99]
 gi|188029076|emb|CAO96944.1| export protein for peptides using the type III secretion system
           [Erwinia tasmaniensis Et1/99]
          Length = 369

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 145/346 (41%), Gaps = 12/346 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK +D+  +G     ++ +    +L+   +L        Y V  D  +   +
Sbjct: 3   QKTELPTEKKRKDSARKGQTLKVKDFTTTVILLSGSYFLC-------YGVNFDDFIFFYT 55

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 E ++   F++   S+   +LV P + +  + GI + L+Q    +    +K +FK
Sbjct: 56  GVLNDSESLNIDGFIMEMTSI-FLKLVFPFIAICCLSGIAATLLQTRFNIASEGLKLNFK 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG K+I+S+  L   +KS   + +        L  +   +L   +A    ++   
Sbjct: 115 ALNPVEGFKKIFSLRTLKECVKSVCYLGVFICTCYSLLDSDLKNILAIRNAGIVQLIVSM 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K + +   + A +   +    Y      LKM K E+K E K++ GNP IKN ++ 
Sbjct: 175 LSLTVKAVTVFAAWGALVLCAEFIAEYFLHVKDLKMDKYEVKQERKETEGNPQIKNARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  +   A   +++++ NPTH A+A+ +       P +  +  N  A+     A 
Sbjct: 235 AHQEILSGEERAAIRNSSVVMANPTHIAVAIYFNPDVAPLPFIALRVTNFKARSAISYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYH 351
           +  IP+     L R L++    +S I          V +++  +  
Sbjct: 295 KIGIPVVRNIFLTRRLYRSYYQHSFISLNDRDL-MLVMEILIWLRQ 339


>gi|194292000|ref|YP_002007907.1| sctu: non flagellar t3S system conserved inner membrane protein.
           flhb/hrpn/yscu/spas family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225904|emb|CAQ71851.1| SctU: non flagellar T3S system conserved inner membrane protein.
           flhB/hrpN/yscU/spaS family [Cupriavidus taiwanensis LMG
           19424]
          Length = 344

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 157/343 (45%), Gaps = 4/343 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           +   K    + +K+++A   G  P S + +     L  L  L       +    S  H  
Sbjct: 2   SDSEKNLEATRRKLDEARKRGEVPRSSDVTSAVVFLGVLAGLWLLGRYFVRLFQSLWHSA 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           + S  Q   +    ++ L    +      V+P + L ++ GI    +Q  P++    +KP
Sbjct: 62  MGSVPQHLADQ--QMLVLGEAAARFLLMGVLPIVGLALVCGIVGAFLQVGPLVAFEQIKP 119

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++  EG+KR++++ NLVN  K  VKI+L+  ++ +         +    A P  IL
Sbjct: 120 DLARLNPAEGLKRMFAVRNLVNLAKILVKILLLAGLVYVLALGAIEDGVRTGYARPAEIL 179

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
               + + ++     +    + V+D     HQ+  + +MS  E + E K++ G+PI+  R
Sbjct: 180 LLVAYIILRMCCWAAVIYLVMAVVDYVHERHQFMKRQRMSVDEYRREYKETQGDPIMAGR 239

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           +++         + E    +T ++ + T YA+ALRY       P +VAKG   +A ++R+
Sbjct: 240 RRAAFFEAAFFGVSERVRVSTAVVYS-TQYAVALRYD-GPGTLPRVVAKGSGQVAARIRQ 297

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
            A ++ +P   +  LA+ L+  VP++  I    ++ VA+L+  
Sbjct: 298 AAADYLVPSAFDSDLAQRLYLNVPLDRFIDRTLFERVAELMRW 340


>gi|62181389|ref|YP_217806.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129022|gb|AAX66725.1| surface presentation of antigens; secretory proteins [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 356

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 147/321 (45%), Gaps = 8/321 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++
Sbjct: 2   SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+
Sbjct: 60  ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG K+++S+  + + +K+ + +        I   +    +   ++ N   I  
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L     + +LD    Y +    +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFRTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQ 327
           A +  +P+  +  LARSLFK 
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314


>gi|167566195|ref|ZP_02359111.1| surface presentation of antigens protein SpaS [Burkholderia
           oklahomensis EO147]
          Length = 374

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 141/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    SR+      +   +I      +  +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKSRDI-----VALVVIAAGASSAAAVVDLTRVAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +L+  + G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++   +K+ + + ++   + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + ++D    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|167573305|ref|ZP_02366179.1| surface presentation of antigens protein SpaS [Burkholderia
           oklahomensis C6786]
          Length = 374

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 141/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    SR+      +   +I      +  +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKSRDI-----VALVVIAAGASSAAAVVDLTRVAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +L+  + G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLICAVAGALPSLVQSRFTLAVEAIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++   +K+ + + ++   + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSVKEAVKALLYVAVLVIAVRMFADLYHHDVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + ++D    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTIRLVLLFLLCALPVLIVDAAVEYFLYHRQLKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|85058550|ref|YP_454252.1| surface presentation of antigens protein SpaS [Sodalis glossinidius
           str. 'morsitans']
 gi|45504758|gb|AAS66849.1| YsaU [Sodalis glossinidius]
 gi|84779070|dbj|BAE73847.1| type III secretion apparatus SpaS [Sodalis glossinidius str.
           'morsitans']
          Length = 370

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 145/326 (44%), Gaps = 8/326 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ K+  ++  +G +   ++ +    ++  + YL        Y +     +   +
Sbjct: 3   EKTEKPTEKRSRESAQKGQSFKVKDVTTTVVLIGGIAYLG-------YGMDFQPFIAFYN 55

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                 E +S+  +L++ L++   +L +P + +  + G  S L+Q   V+    +K +F 
Sbjct: 56  NVVLNGERLSYQAYLIS-LAMLFMQLTLPIVAVCFIAGTFSTLLQTRMVIATKAIKLNFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  +G+KRI+++  +   +K+   + +    +    +     +L     N   ++   
Sbjct: 115 ALNPVKGLKRIFNLRAVKELVKTLCYVAVFVVGVNYFQSHYLKELLSIYHGNIWQVIRIW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K++ + +     + VLD    Y   +  +KM K E+K E K++ GNP IK+ +++
Sbjct: 175 SELAVKLVFIYVGVSLIVLVLDGLCEYFLQFKDMKMEKHEVKQEHKENEGNPEIKSARRN 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
                +      A   + +I+ NPTH AL + +       P +  +  N+ A+ +   A 
Sbjct: 235 AHFELLSGAEQAAIRSSEMILANPTHIALGIFFNPDVAMLPFITLRATNMKARAIIAYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI 334
           +  +P+     LAR L+K   ++S I
Sbjct: 295 KVGVPVVRSIPLARRLYKNYTVHSFI 320


>gi|293416348|ref|ZP_06658987.1| hypothetical protein ECDG_03102 [Escherichia coli B185]
 gi|291431704|gb|EFF04687.1| hypothetical protein ECDG_03102 [Escherichia coli B185]
          Length = 362

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 147/323 (45%), Gaps = 12/323 (3%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K+ E+A  +G +  SR+  +    L    YL    S  + S+   L   +
Sbjct: 2   SGNKTEKPTRKRREEAARKGQSFRSRDFIVACLTLGGTAYLASVAS--LRSLMEVLGQAV 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +   Q  + D +  VF       S  ++++P L L +       ++Q   VL    ++P 
Sbjct: 60  SFHFQINIADYTEQVFC------SGMKIILPFLALCLFCSALPSILQTGFVLATKALQPR 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKI--ILVGTIITISLTENYFTMLDFISANPHSI 184
              +   +GIK+I+S+  +   +K+ + +   ++  ++     EN   +   ++ N   +
Sbjct: 114 LSALDPTKGIKKIFSLRTVKEAVKAILYLGSFIISGMLFWF--ENKRLVFSQVNGNLFVV 171

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
                  +  ++ + L     + +LD    Y      +KM K+E+K E+K++ GNP +K+
Sbjct: 172 ADVWRHLLFSLVALCLGCSVIILLLDALAEYFLVMKDMKMDKEEVKREMKETEGNPEVKS 231

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R++ I    +  ++      + +II NPTH A+ + +       P++  +  N  A  +R
Sbjct: 232 RRREIHMDILSEQIKSDIDNSRLIIANPTHIAVGIYFKPEIAPYPLISVREANQRALAVR 291

Query: 305 KIAYEHNIPIFEEPSLARSLFKQ 327
           + A +  IP+  +  LAR +FK 
Sbjct: 292 QYAEKVGIPVVVDIRLARRIFKT 314


>gi|167577442|ref|ZP_02370316.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis TXDOH]
          Length = 381

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 138/321 (42%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T         
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGALS-----APALVDLTRVAAEFTRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +          L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYALAWAKLFL---RIAAPFVLLCAAVGALPSLVQSRFTLAVESIRIDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++ + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPIKGMKRLFSWRSVKDAVKALLYVGVFAITVRVFADLYHHDVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + ++D    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLIVDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|16766193|ref|NP_461808.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161615799|ref|YP_001589764.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167993122|ref|ZP_02574217.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230957|ref|ZP_02656015.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235927|ref|ZP_02660985.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168242624|ref|ZP_02667556.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261990|ref|ZP_02683963.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463978|ref|ZP_02697895.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194444022|ref|YP_002042128.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451625|ref|YP_002046847.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194468977|ref|ZP_03074961.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194735131|ref|YP_002115839.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197262027|ref|ZP_03162101.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242012|ref|YP_002216856.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388611|ref|ZP_03215223.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928232|ref|ZP_03219432.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205353830|ref|YP_002227631.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858149|ref|YP_002244800.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|730801|sp|P40702|SPAS_SALTY RecName: Full=Surface presentation of antigens protein spaS
 gi|404293|emb|CAA51927.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421435|gb|AAL21767.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161365163|gb|ABX68931.1| hypothetical protein SPAB_03590 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402685|gb|ACF62907.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194409929|gb|ACF70148.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455341|gb|EDX44180.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710633|gb|ACF89854.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195633151|gb|EDX51565.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197240282|gb|EDY22902.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290674|gb|EDY30028.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197936528|gb|ACH73861.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605709|gb|EDZ04254.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322554|gb|EDZ07751.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205273611|emb|CAR38598.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205328759|gb|EDZ15523.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334405|gb|EDZ21169.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338041|gb|EDZ24805.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205349087|gb|EDZ35718.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709952|emb|CAR34306.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248023|emb|CBG25856.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995015|gb|ACY89900.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159446|emb|CBW18964.1| type III secretion system secretory apparatus [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913905|dbj|BAJ37879.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223436|gb|EFX48502.1| Surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614295|gb|EFY11226.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621641|gb|EFY18494.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624502|gb|EFY21335.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628833|gb|EFY25616.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633440|gb|EFY30182.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635984|gb|EFY32692.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639692|gb|EFY36377.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646875|gb|EFY43378.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650643|gb|EFY47048.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654745|gb|EFY51064.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658965|gb|EFY55218.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664468|gb|EFY60662.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668283|gb|EFY64440.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673737|gb|EFY69838.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677798|gb|EFY73861.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681372|gb|EFY77404.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683774|gb|EFY79784.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131239|gb|ADX18669.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193837|gb|EFZ79040.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200307|gb|EFZ85389.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203190|gb|EFZ88219.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205563|gb|EFZ90528.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210074|gb|EFZ94977.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216377|gb|EGA01104.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221124|gb|EGA05555.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226946|gb|EGA11128.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230770|gb|EGA14888.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234879|gb|EGA18965.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238918|gb|EGA22968.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241618|gb|EGA25649.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248235|gb|EGA32171.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251181|gb|EGA35054.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256065|gb|EGA39803.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263200|gb|EGA46738.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264297|gb|EGA47803.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271123|gb|EGA54551.1| type III secretion system protein SpaS [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624618|gb|EGE30963.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628939|gb|EGE35282.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989759|gb|AEF08742.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 356

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++
Sbjct: 2   SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+
Sbjct: 60  ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG K+++S+  + + +K+ + +        I   +    +   ++ N   I  
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIAV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L     + +LD    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQ 327
           A +  +P+  +  LARSLFK 
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314


>gi|167915488|ref|ZP_02502579.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 112]
          Length = 375

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|167550264|ref|ZP_02344021.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324806|gb|EDZ12645.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 356

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++
Sbjct: 2   SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+
Sbjct: 60  ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG K+++S+  + + +K+ + +        I   +    +   ++ N   I  
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVDIAV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L     + +LD    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQ 327
           A +  +P+  +  LARSLFK 
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314


>gi|224584665|ref|YP_002638463.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469192|gb|ACN47022.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715873|gb|EFZ07444.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 356

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++
Sbjct: 2   SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+
Sbjct: 60  ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG K+++S+  + + +K+ + +        I   +    +   ++ N   I  
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L     + +LD    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAVAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQ 327
           A +  +P+  +  LARSLFK 
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314


>gi|16761664|ref|NP_457281.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143148|ref|NP_806490.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414839|ref|YP_151914.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168820416|ref|ZP_02832416.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197247812|ref|YP_002147784.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197363767|ref|YP_002143404.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|213052431|ref|ZP_03345309.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425711|ref|ZP_03358461.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580230|ref|ZP_03362056.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609307|ref|ZP_03369133.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213649913|ref|ZP_03379966.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213853013|ref|ZP_03382545.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238909654|ref|ZP_04653491.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|25322234|pir||AC0851 secretory protein (associated with virulence) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503965|emb|CAD05994.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138781|gb|AAO70350.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129096|gb|AAV78602.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095244|emb|CAR60795.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211515|gb|ACH48912.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205342919|gb|EDZ29683.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087292|emb|CBY97057.1| Surface presentation of antigens protein spaS [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 356

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 146/321 (45%), Gaps = 8/321 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++
Sbjct: 2   SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A    + + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+
Sbjct: 60  ADNFDQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALPALLQAGFVLATEALKPN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG K+++S+  + + +K+ + +        I   +    +   ++ N   I  
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L     + +LD    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQ 327
           A +  +P+  +  LARSLFK 
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314


>gi|167743198|ref|ZP_02415972.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 14]
          Length = 362

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|167820372|ref|ZP_02452052.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 91]
          Length = 365

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|167898806|ref|ZP_02486207.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 7894]
          Length = 367

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|167828744|ref|ZP_02460215.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei 9]
          Length = 358

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQPNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFADLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|34498076|ref|NP_902291.1| surface presentation of antigens protein SpaS [Chromobacterium
           violaceum ATCC 12472]
 gi|34103931|gb|AAQ60291.1| secretory protein / flagellar biosynthetic protein flhB
           [Chromobacterium violaceum ATCC 12472]
          Length = 353

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 142/328 (43%), Gaps = 8/328 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ KK++DA  +G +  SR+  +    L  + YL+ F S  +  +       L
Sbjct: 2   SSNKTEKPTRKKLQDAAKKGQSFKSRDLVVACLTLCGVAYLVSFGS--LVELMGIFRQAL 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A   Q  +   +  VF          +L++P  LL +       L+Q   VL    +K +
Sbjct: 60  AGGFQLDMRGYAQAVF------WQGLKLLLPIFLLCVAASALPVLLQTGFVLASEALKLN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            + ++   G K+++S+  +   +K+ + +      + +   ++   +   ++ +   I  
Sbjct: 114 LEALNPINGFKKLFSLRTVKEAVKALLYLASFVVAVALIWRKHKALLFAQLNGSVMDIAA 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L  I  + +LD    Y  +   +KM KQE+K E+K+  GNP IK+R+
Sbjct: 174 VWRELLLSLVLTCLGCIVLILILDALAEYFLFMKDMKMDKQEVKREMKEQEGNPEIKSRR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +      +  ++      + +II NPTH A+ + +       P +     N  A  +R  
Sbjct: 234 REAHFELLSEQVKSDVENSRLIIANPTHIAIGIYFRPELVPIPFVSVMETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A +  +P+  +  LAR +       S I
Sbjct: 294 AEKVGVPVVRDVPLARRILASHRRYSFI 321


>gi|218988947|gb|ACL13610.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. salamae serovar Sofia]
          Length = 356

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 147/321 (45%), Gaps = 8/321 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++
Sbjct: 2   SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A   ++ + D S  VF +        + +IP +LL ++      L+Q   VL    +KP+
Sbjct: 60  ADNFEQSMADYSLAVFGIG------LKYLIPFMLLCLVCSALRALLQAGFVLATEALKPN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG K+++S+  + + +K+ + +        I   +    +   ++ N   I  
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFLQLNGNVVGIAV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L     + +LD    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQ 327
           A +  +P+  +  LARSLFK 
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314


>gi|115358968|ref|YP_776106.1| type III secretion exporter [Burkholderia ambifaria AMMD]
 gi|115284256|gb|ABI89772.1| type III secretion exporter [Burkholderia ambifaria AMMD]
          Length = 343

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      + P++K++ DA  +G+ P S E    +  +   + L          + +
Sbjct: 1   MAEKD------QKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++  +A     +  + +  L+   +   + L    +   ++ G+ +  +Q   V+  
Sbjct: 55  LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+    +      
Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SIL      +  +     L    + ++DI    H++  K+KMS +E++ E K+  G+P
Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ +++ +AR      + +    A++++ +         Y       P ++A+G+   A
Sbjct: 233 HIEAKRRQLAREAQFSSLQDRIGFASVVVYS--SSVAVALYYGGIGTLPWVLARGEGEAA 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++ ++A +   P      LA +L+   P    I    ++ VAQL+  
Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338


>gi|171322217|ref|ZP_02911064.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
 gi|171092454|gb|EDT37799.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
          Length = 343

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      + P++K++ DA  +G+ P S E    +  +   + L          + +
Sbjct: 1   MAEKD------QKPTAKRLRDARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++  +A     +  + +  L+   +   + L    +   ++ G+ +  +Q   V+  
Sbjct: 55  LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+    +      
Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SIL      +  +     L    + ++DI    H++  K+KMS +E++ E K+  G+P
Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ +++ +AR      + +    A++++ +         Y       P ++A+G+   A
Sbjct: 233 HIEAKRRQLAREAQFSSLPDRIGFASVVVYS--SSVAVALYYGGVGTLPWVLARGEGEAA 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++ ++A +   P      LA +L+   P    I    ++ VAQL+  
Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338


>gi|312172198|emb|CBX80455.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           ATCC BAA-2158]
          Length = 363

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 145/349 (41%), Gaps = 12/349 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK +D+  +G++   ++     ++++   +LL                +L  
Sbjct: 3   QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMD--FSRFIDCYTNILID 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   + D       +  +      L  P + +  + G+ + L Q    +    +K +FK
Sbjct: 61  VSSVNINDF------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIATQALKLNFK 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+KRI+S+  +  F+KS   +++        +  +    L    A    ++   
Sbjct: 115 ALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIVSM 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K + + + +   +   D    Y      LKM K E+K E K+S GNP IK+ ++ 
Sbjct: 175 LSLTVKAVTIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  + M A  ++++I+ NPTH A+A+ +       P +  +  N  A+ +   A 
Sbjct: 235 AHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLVYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354
           +  IP+     L R L+K    +S I         A+  ++  +   +I
Sbjct: 295 KIGIPVVRNIFLTRRLYKSYVQHSFISLNDDDL-MAIMDILIWLRQVEI 342


>gi|167724223|ref|ZP_02407459.1| surface presentation of antigens protein SpaS [Burkholderia
           pseudomallei DM98]
          Length = 352

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T      +  
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALIVIATGALA-----APALVDLTRIAAEFVRI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     +     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASTGAQLNPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  +  + +K+ + + +    + +     +  +     A P  + +  
Sbjct: 115 ALDPVKGMKRLFSWRSAKDAVKALLYVGVFALTVRVFAGLYHADVFGLFRARPALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + +LD    Y  ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTVRLVLLFLLCALPVLILDAAVEYFLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGVYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              +P+    +LARS+++  P
Sbjct: 295 ACGVPVVRNVALARSIYRNSP 315


>gi|292488070|ref|YP_003530947.1| surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
 gi|291553494|emb|CBA20539.1| Surface presentation of antigens protein SpaS [Erwinia amylovora
           CFBP1430]
          Length = 363

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 145/349 (41%), Gaps = 12/349 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK +D+  +G++   ++     ++++   +LL                +L  
Sbjct: 3   QKTELPTEKKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMD--FSRFIDCYTNILID 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            +   + D       +  +      L  P + +  + G+ + L Q    +    +K +FK
Sbjct: 61  VSSVNINDF------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIATQALKLNFK 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  EG+KRI+S+  +  F+KS   +++        +  +    L    A    ++   
Sbjct: 115 ALNPVEGLKRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIVSM 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                K + + + +   +   D    Y      LKM K E+K E K+S GNP IK+ ++ 
Sbjct: 175 LSLTVKAVTIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSARRR 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
             +  +  + M A  ++++I+ NPTH A+A+ +       P +  +  N  A+ +   A 
Sbjct: 235 AHQELLSGEEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLVYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354
           +  IP+     L R L+K    +S I         A+  ++  +   +I
Sbjct: 295 KIGIPVVRNIFLTRRLYKSYVQHSFISLNDDDL-MAIMDILIWLRQVEI 342


>gi|167840165|ref|ZP_02466849.1| surface presentation of antigens protein SpaS [Burkholderia
           thailandensis MSMB43]
          Length = 366

 Score =  243 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 137/321 (42%), Gaps = 8/321 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P++KK+ DA  +G    +R+      I    +      +P +  +T         
Sbjct: 3   EKTEKPTAKKLRDAAKKGQTFKARDIVALVVIATGALA-----APALVDLTRIAAEFARI 57

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A+     D     F    L L   R+  P +LL    G    L+Q    L +  ++    
Sbjct: 58  ASSGAQPDPGAYAFAWAKLFL---RIAAPFVLLCAAAGALPSLVQSRFTLAVESIRFDLT 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            +   +G+KR++S  ++ +  K+ + + +    + +     +  +     A    + +  
Sbjct: 115 ALDPVKGMKRLFSWRSVKDAAKALLYVAVFAVTVRVFADLCHHDLFGLFRARAALLGHMW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                +++++ LL    + ++D    Y+ ++ +LKM K E+K E K+S GN  IK++++ 
Sbjct: 175 IVLTIRLVLLFLLCALPVLIVDAAVEYYLYHRELKMDKHEVKQEYKESEGNHEIKSKRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I +  +  ++     ++  I+ NPTH A+ +         P +  +  N  A  + + A 
Sbjct: 235 IHQELLSEEIKANVEQSDFIVANPTHIAIGIYVNPDIVPIPFVSVRETNARALAVIRHAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVP 329
              + +    +LARS+++  P
Sbjct: 295 ACGVTVVRNVALARSIYRNSP 315


>gi|153003614|ref|YP_001377939.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5]
 gi|152027187|gb|ABS24955.1| type III secretion exporter [Anaeromyxobacter sp. Fw109-5]
          Length = 343

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 159/347 (45%), Gaps = 8/347 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            ++TE P+ K++ +A   G+    RE    +++   L+ L         S+T +L  LL 
Sbjct: 3   GDRTERPTPKRLREARRRGDVAQGRELGGAAALAGGLLALALTGP----SMTRELASLLR 58

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +  Q   +  +    LL    ++  RL +      +   + +  +Q   V     + P  
Sbjct: 59  AQLQAAAQPSADPAALLHAALVTVGRLALAPASAALAAAVLAGALQTGFVFAPGALSPRA 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +RV+   G++R+ S  + +  +    K  ++  +  + L     ++      +    L+ 
Sbjct: 119 ERVNPLRGLRRLLSPASALAVLLGLAKAAVLLGVAVVWLRSAAPSLAGLARLDAR-ALWG 177

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +   +  ++  ++   A L + D+  +  +    L+M++ E++ E K+  G+P  +  ++
Sbjct: 178 SLPMLGGLVARLVAAYALLALGDVALARFRHRRALRMTRDEVRREHKEDEGDPAHRAERR 237

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
            + R+ +        SRAT+++ NPTH A+ALR+ +   DAP +VAKG    A ++R  A
Sbjct: 238 RLHRALLEAGP---VSRATVVVVNPTHVAVALRHDRDGEDAPRVVAKGSGPAAARIRSAA 294

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
               +PI  +  LAR+L +   +   IP   Y+A A ++  +Y  ++
Sbjct: 295 RRAGVPIVRDVPLARALHRLAEVGDEIPEELYEAAAAVLAHLYGLEV 341


>gi|220913714|ref|YP_002489023.1| type III secretion exporter [Arthrobacter chlorophenolicus A6]
 gi|219860592|gb|ACL40934.1| type III secretion exporter [Arthrobacter chlorophenolicus A6]
          Length = 359

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 162/353 (45%), Gaps = 9/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+      +TE  + K++ D  ++G    S++ + +  + A  + L         +   
Sbjct: 1   MSD---SQERTEQATDKRMRDVRSKGQLSRSQDLTAWLGVGAGAVMLPATIDRASNAAVD 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +  + A        D +  V  L     S + ++ P  ++  +  +    +Q       
Sbjct: 58  QVFSVRAIMES---PDPAKAVHALELGLGSMAGVLAPMFVVVFLVVLAGSAVQGGVHF-- 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
              +  F+  +L  G+KR++ +  +   +K+ +K ++VG ++   +      +L      
Sbjct: 113 KKFRAEFEHFNLLSGMKRLFGMQAVWGGLKALLKAVVVGIVLYSVVQGLIPVLLTAGGLP 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              ++  A   +  ++   +     L  +D+     +   K +MSK+E+ DE K + G+P
Sbjct: 173 VSGVIAAAADGIGALVQCAVAAGLVLAAVDVLVVMRRNRKKTRMSKKEVTDENKNTEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++++ ++S   +  R++M+ A + A +++ NPTH A+AL+Y   +  AP +VAKG  +IA
Sbjct: 233 LVRSHRRSRQLAMSRNRMIAAIADADVVLVNPTHVAVALKYDAGK-SAPRVVAKGAGVIA 291

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++R  A    +P+ ++  LAR+L     +   IP   Y+AVA ++  +   K
Sbjct: 292 ARIRAEAEAKEVPMVQDIPLARALHSACELGQEIPVELYRAVAGVLAFVMSLK 344


>gi|170702400|ref|ZP_02893289.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
 gi|172063760|ref|YP_001811411.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
 gi|170132694|gb|EDT01133.1| type III secretion exporter [Burkholderia ambifaria IOP40-10]
 gi|171996277|gb|ACB67195.1| type III secretion exporter [Burkholderia ambifaria MC40-6]
          Length = 343

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 153/348 (43%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      + P++K++ +A  +G+ P S E    +  +   + L          + +
Sbjct: 1   MAEKD------QKPTAKRLREARQKGDVPKSAETISSAFFVGVCVALAVGLGTLFARLQA 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              ++  +A     +  + +  L+   +   + L    +   ++ G+ +  +Q   V+  
Sbjct: 55  LFRLVFDAAG--AADPSARLAALIDGAARDWAMLSAQIVAAGLLAGLLAGFVQVGGVMAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + + P   R++  EG+K ++S+ NLVN  K  +K +L+   +   + E+    +      
Sbjct: 113 SRLVPQLSRLNPAEGLKNMWSMRNLVNLAKMLLKTVLLAATLGWLIVESLDPSVQSGFTR 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P SIL      +  +     L    + ++DI    H++  K+KMS +E++ E K+  G+P
Sbjct: 173 PMSILALIVKLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIEEVRREHKEDEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            I+ +++ +AR      + +    A++++ +         Y       P ++A+G+   A
Sbjct: 233 HIEAKRRQLAREAQFSSLQDRIGFASVVVYS--SSVAVALYYGGIGTLPWVLARGEGEAA 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           +++ ++A +   P      LA +L+   P    I    ++ VAQL+  
Sbjct: 291 ERIVRLARDALRPTLANAGLAHALYDSTPEKGTIQQQHFREVAQLLKW 338


>gi|238755990|ref|ZP_04617315.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473]
 gi|238705779|gb|EEP98171.1| hypothetical protein yruck0001_28520 [Yersinia ruckeri ATCC 29473]
          Length = 386

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 150/346 (43%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D+  +G +   ++    + ++   + +  F    + ++   L  +L S
Sbjct: 3   EKTEQPTDKKVRDSAKKGQSFKGKDLIAAAVLVCGALAISGF--SSLTALGHLLQKVLLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            ++ K+         L  L       VIP LL  ++ G+   L+Q    L    +K +F 
Sbjct: 61  PSEIKIS------AYLDELYRLFLYAVIPVLLCCLLPGMLLSLLQSRFRLATEALKINFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G K+I+ I  L   +K+ + ++  GT I   +      +     A    ++   
Sbjct: 115 HLNPISGFKKIFGIRPLKELVKALLYLLAFGTSIYTFILLWRREVFMLYHAELEEMITQW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                  + + L     L +LD       +   LKM KQE+K E K++ G+P IK  +K 
Sbjct: 175 GRLCIIFIFVFLASSLILLLLDTLTELFLFIKDLKMEKQEVKKEYKENEGDPQIKQARKE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           I R  +  +       + +++ NPTH AL + +  +  + P+++ K QN  A+ +   A 
Sbjct: 235 IHREILSEETKNGIKNSQVVMANPTHIALGIYFDPSVAELPLIIVKAQNAQARAVIAYAE 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           E  IP+  +  LAR L++   I S I       +  ++  +   ++
Sbjct: 295 EQGIPVVRDIPLARRLYRNNSIFSFIRDDDLLDIMNILIWLKRIEL 340


>gi|326404521|ref|YP_004284603.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum
           AIU301]
 gi|325051383|dbj|BAJ81721.1| flagellar biosynthetic protein FlhB [Acidiphilium multivorum
           AIU301]
          Length = 324

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 156/319 (48%), Gaps = 3/319 (0%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +  +S+   L  ++         + + L      A    ++  + +   L    +++  
Sbjct: 1   MATLASLGVALAVMIGVLPSSAERLANTLASAFTRAAT--VDSGAGLSRALWQAGMASLG 58

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           + IP      +  I   L+Q     N   +  +F R++   GI +++   NL    +S +
Sbjct: 59  VFIPFAGAIALSAIVVSLLQTGFRTNWGAIGLNFARLNPLAGIGKLFGTPNLAASGQSIL 118

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           K+  +G  + + +      +   +  +  ++L   F ++  +L   ++       +D   
Sbjct: 119 KLAAIGAALYVVMDARLHGLEAMLLGSEKTLLAAIFGSIVAILSAAVMIQVVSGAVDFVL 178

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
             +++ + +KMS+QE+KDE K++ G+P ++ R K+   +  +  +  A +RA ++ITNPT
Sbjct: 179 VRNRFSTSVKMSRQEVKDEQKETDGDPHVRARIKAARSALAKRSLNVAMARAAVVITNPT 238

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
           HYA+AL Y   + +AP +VAKG +  A ++R +A E  IPI   P LAR+LF+Q  + + 
Sbjct: 239 HYAVALEYRAGQAEAPKIVAKGADERAARIRDLAREARIPIVANPPLARALFQQ-DVETE 297

Query: 334 IPPVFYKAVAQLIYKIYHK 352
           I P  Y+AVA++I  I+  
Sbjct: 298 ILPEHYRAVAEIIAYIWKL 316


>gi|161502069|ref|YP_001569181.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863416|gb|ABX20039.1| hypothetical protein SARI_00086 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 356

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 68/321 (21%), Positives = 145/321 (45%), Gaps = 8/321 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S         + +++
Sbjct: 2   SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS--FNEFMGIIKIII 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A   ++ + D S  V  +        + +IP +LL ++      L+Q   VL    +K +
Sbjct: 60  AENFEQSMADYSLAVLGVG------LKYLIPFMLLCLVCSALPTLLQTGFVLATEALKLN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
              ++  EG K+++S+  + + +K+ + +        I   +    +   ++ N   I  
Sbjct: 114 LSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVMGIAV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  +++  L     + +LD    Y      +KM K+E+K E+K+  GNP +K+++
Sbjct: 174 IWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + +    +  ++      + +I+ NPTH  + + +       P++     N  A  +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPFPMISVYETNQRALAVRSY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQ 327
           A +  +P+  +  LARSLFK 
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314


>gi|28628135|gb|AAO34619.1| HrcU [Erwinia chrysanthemi]
          Length = 347

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 147/333 (44%), Gaps = 9/333 (2%)

Query: 24  NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83
            +G    S++        A L  +L     G+  + + + + L+  +         +   
Sbjct: 4   KKGEVGQSQDVPKLLISFALLEMILALTDSGMSKLQALMQLPLSRISDPFGHAADEV--- 60

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
            +   +  +   +  + + ++  +    IQ  P+  +  +K  F R++    IK+++++ 
Sbjct: 61  FSEALVLLATFCLLTISVALLMRVVGGWIQYGPLFAVEALKLDFNRLNPINQIKQMFTMR 120

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            + + + + +K   +  +  + +      +++    + ++        ++ V    L  +
Sbjct: 121 KITDMLTNLLKATTIWVVFWLVVIPQLEWLVELAYGDLNAFWKGVENVLKSVSCTTLSAL 180

Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH----KMM 259
             L V D G   + +  + +M  ++I++E K S G+P +K  +KS+A+  +      +  
Sbjct: 181 LALGVFDFGLQKYYFLKQQRMIHEDIRNEYKNSEGDPHMKGHRKSVAQEILNEPASPRAK 240

Query: 260 EATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
                A +++ NPT YA+AL Y   +   P ++ KG++  AK +   A++  +P+     
Sbjct: 241 PKVEDADLLLVNPTDYAVALFYRPGKTPLPRILLKGEDDQAKALIARAHQAGVPVIRFIW 300

Query: 320 LARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           LAR+L++ VP    IP    + VAQ+ YK+  +
Sbjct: 301 LARTLYR-VPEGHYIPRDTLQPVAQV-YKVLRQ 331


>gi|13449103|ref|NP_085319.1| Type III secretion protein [Shigella flexneri 5a]
 gi|31983539|ref|NP_858289.1| surface presentation of antigens protein SpaS [Shigella flexneri 2a
           str. 301]
 gi|60415918|sp|P0A1M8|SPAS_SHIFL RecName: Full=Surface presentation of antigens protein spaS;
           AltName: Full=Spa40 protein
 gi|60415919|sp|P0A1M9|SPAS_SHISO RecName: Full=Surface presentation of antigens protein spaS;
           AltName: Full=Spa40 protein
 gi|13310651|gb|AAK18475.1|AF348706_164 Type III secretion protein [Shigella flexneri 5a]
 gi|303896|dbj|BAA02832.1| spa40 [Shigella flexneri]
 gi|829083|dbj|BAA09165.1| ORF25 [Shigella sonnei]
 gi|12329100|emb|CAC05831.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella
           flexneri]
 gi|18462531|gb|AAL72303.1| Spa40, component of the Mxi-Spa secretion machinery [Shigella
           flexneri 2a str. 301]
 gi|281603911|gb|ADA76894.1| surface presentation of antigens protein SpaS [Shigella flexneri
           2002017]
          Length = 342

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 139/343 (40%), Gaps = 8/343 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G +   ++ +    IL     ++ FFS     +     ++   
Sbjct: 3   NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFSLSDVMLLYRYVIINDF 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                    + ++     +           L   ++  +   L+Q   VL    +K  F 
Sbjct: 63  EINEGKYFFAVVIVFFKIIGFP--------LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  +G+K+I+SI  +  F KS + +I++          +   +   + ++   +    
Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIFSQVFSSVDGLYLIW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               + +++  L F   + +LD    +  +   + M KQEIK E  +  G+   K+R++ 
Sbjct: 175 GRLFKDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHFETKSRRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +    +  +       + +++ NPTH A+ + +      AP +     N  A  +RK A 
Sbjct: 235 LHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYAN 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           E  IP   +  LAR L+K     S +       V +LI  +  
Sbjct: 295 EVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 337


>gi|74314954|ref|YP_313372.1| surface presentation of antigens protein SpaS [Shigella sonnei
           Ss046]
 gi|82524599|ref|YP_406194.1| surface presentation of antigens protein SpaS [Shigella dysenteriae
           Sd197]
 gi|187734501|ref|YP_001883219.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94]
 gi|194435373|ref|ZP_03067572.1| Spa40 [Shigella dysenteriae 1012]
 gi|32307049|gb|AAP79019.1| Spa40 [Shigella flexneri]
 gi|73858431|gb|AAZ91137.1| Spa40 [Shigella sonnei Ss046]
 gi|81243997|gb|ABB64706.1| Spa40 [Shigella dysenteriae Sd197]
 gi|187426997|gb|ACD06272.1| flagellar biosynthetic protein FlhB [Shigella boydii CDC 3083-94]
 gi|194416383|gb|EDX32553.1| Spa40 [Shigella dysenteriae 1012]
 gi|320182867|gb|EFW57742.1| surface presentation of antigens protein SpaS [Shigella flexneri
           CDC 796-83]
          Length = 342

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 139/343 (40%), Gaps = 8/343 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G +   ++ +    IL     ++ FFS     +     ++   
Sbjct: 3   NKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISFFSLSDVMLLYRYVIINDF 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                    + ++     +           L   ++  +   L+Q   VL    +K  F 
Sbjct: 63  EINEGKYFFAVVIVFFKIIGFP--------LFFCVLSAVLPTLVQTKFVLATKAIKIDFS 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++  +G+K+I+SI  +  F KS + +I++          +   +   + ++   +    
Sbjct: 115 VLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIFSQVFSSVDGLYLIW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               + +++  L F   + +LD    +  +   + M KQEIK E  +  G+   K+R++ 
Sbjct: 175 GGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKREYIEQEGHFETKSRRRE 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +    +  +       + +++ NPTH A+ + +      AP +     N  A  +RK A 
Sbjct: 235 LHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYAN 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           E  IP   +  LAR L+K     S +       V +LI  +  
Sbjct: 295 EVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 337


>gi|284007395|emb|CBA72801.1| type III secretion system protein SpaS [Arsenophonus nasoniae]
          Length = 345

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 153/343 (44%), Gaps = 8/343 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ KK++DA  +G +  S++      +++CLI+L   +     + T+ + +  
Sbjct: 2   SANKTEKPTPKKLKDAAQKGKSFKSKDL-----VISCLIFLGCLYLTNYINFTTIIEIWA 56

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +          +  F+L     +A ++ +P L L ++  + + + Q    +    +K  
Sbjct: 57  NTLKNNHSITPLNYTFVL---FFTALKIFLPFLFLCILIIMLTTMAQTGFKIATKVLKFD 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+I+SI  + +F+K+F+ II+   +  I    N   +   I  N  S+  
Sbjct: 114 FNNLNPINGVKKIFSIRTIKDFIKTFLFIIIFFIVTYIYWNNNKKIIFSQIYLNIESVFI 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                V   +I++LL    + +LD    Y      LKM K E+K E K+  GNP IK+++
Sbjct: 174 VWKELVSNFIIILLLSSFIILILDAVAEYFIHIKDLKMDKNEVKREYKEQEGNPEIKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           K +    +  ++      +  +I NPTH  + +         P++     N  A   R  
Sbjct: 234 KELHVEILSEQVKSDIESSKFMIANPTHIIIGIYLNPQIVAIPMVSVLETNQRALAARAY 293

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           A +  +P+ E   LAR ++    + S I       V +++  +
Sbjct: 294 AEKEGVPVIENIVLARRIYNTHQLYSFINLEEIGEVIKILSWL 336


>gi|285018286|ref|YP_003375997.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473504|emb|CBA16007.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 358

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 148/343 (43%), Gaps = 5/343 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK  D+  +G +  + +      ++   + + F F    +     L  L  S
Sbjct: 3   EKTEKPTQKKRADSEKKGKSFKAADIGAMLLLIVGGVAIPFLFD---FDSIFSLFKLFGS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
           A Q K  D+      +  L   A +  +  +++         LIQ    L  + ++  F 
Sbjct: 60  AVQAK--DLPGPFAYVKTLGWVAVKGTVIFIVVCSFATTVPSLIQSRLTLAFDAIRFDFD 117

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+K++++I    + +K+ + II     + I +  +   +   +     ++    
Sbjct: 118 ALNPANGLKKLFNIRVAKDLVKTLLYIITTSAAVAIFIHNHCRELFMTMRMPEFALCSEL 177

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
               + + + ++     + VLD    Y  +   LKM K E+K EIKQS GNP +K+RQ+ 
Sbjct: 178 GHLAKYLCLYMIGMAIPVLVLDCLTEYFLYIHGLKMEKYEVKQEIKQSQGNPEVKSRQRQ 237

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           ++R  +  K+ E    +T ++ NPTH A+ +         P++  +  +  A+++   A 
Sbjct: 238 LSREVLSEKVKENVKGSTFVLANPTHIAIGIYADFKVAPFPMVSVREVDARAREVIDYAM 297

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +  +P+  +  LAR +F +      +     + + +++  +  
Sbjct: 298 KCGVPVLRDIPLARRIFDRTQRYQFVSTEDLEPIIRILTWLRQ 340


>gi|319795601|ref|YP_004157241.1| type III secretion exporter [Variovorax paradoxus EPS]
 gi|315598064|gb|ADU39130.1| type III secretion exporter [Variovorax paradoxus EPS]
          Length = 346

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 10/348 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D      +AP+ K++ +A   G    S + +      A ++  ++     IYS+  
Sbjct: 1   MAEKD------QAPTRKRLREARRRGEVAFSADVASTVG-FAAVLCAVWLGGHSIYSLLR 53

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
           +L  L A++T            L+ H   +     +P + +  + GI   L Q   +   
Sbjct: 54  EL-WLHATSTSLLSRPDDRFGELVLHTGEALLWGTVPIMGIAALAGIVGSLFQVGGMAAW 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P   R++  EG KRI+S  + +N +K  +K +L+G ++ + +     T L    A 
Sbjct: 113 GRLVPDMNRMNPAEGFKRIFSTRSAINLLKMVLKTVLLGALMFLVVRGYLDTALKLGYAT 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P  IL      V +     LL  A +  +D    +H++  + +MS ++I+ E K+S G+P
Sbjct: 173 PAGILAAGARMVLQAFGWALLVYALMAAIDYAHEHHEFIKQQRMSFEDIRQEHKESDGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           + + R++S     +   + +    A+ +I +    A+AL+Y+   +  P ++A+G+  + 
Sbjct: 233 LTQARRRSAHFEAVYASLADRVRAASAVICS-ARVAVALQYLGERD-LPRVIARGEGEVG 290

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
            ++R+ A E  IP   EPSLA  L++ VP + AIP   Y  VA+L+  
Sbjct: 291 AQIRRFASEGLIPTEFEPSLAERLYEDVPQDQAIPRSLYAPVARLLRW 338


>gi|323388139|gb|ADX60335.1| type III secretion protein RscU [Pseudomonas fluorescens]
          Length = 365

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 158/350 (45%), Gaps = 11/350 (3%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
                K  A + KK++D   +G    S++      + A     LF     +      L +
Sbjct: 2   SDSGEKKHAATPKKLKDQRQKGQVAQSQDVGKLLVLTALSEIALFTAETSMQRFQQLLVM 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            ++   Q  +  +  +   LT   +      +    L +   + S  IQ   +     +K
Sbjct: 62  PMSRFGQPFVRALEEV---LTEGLIVFFSFALLMAGLAIAVKLISGWIQFGFLFAPESLK 118

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
            +F R++    +K+++S  ++ N +    K +L+  I+ + ++ +   +++  +++  S 
Sbjct: 119 LNFSRLNPISQVKQMFSAKSVTNLLMGLAKALLLALILYVVISPSLGALINLATSDLQSY 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +       R +L   L  +  L ++D+    H +   ++M++ E+  E K   G+P +K 
Sbjct: 179 ILALIILFRHLLHACLGLLLVLALIDMALQKHFFAKSMRMTQVEVVKEYKDMEGDPHVKG 238

Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +++++A+   + +      +   A +++ NPTH+A+AL Y   +   P+LV KG +  A+
Sbjct: 239 QRRALAQQLAQEEPKVKLPKLEEADMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAEAR 298

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           K+   A   ++P+ +   LAR+L+++  + + IP    +AVA     +Y 
Sbjct: 299 KLIDRAKAADVPVIQCVWLARTLYEK-KLGANIPRETLQAVA----FLYR 343


>gi|293412209|ref|ZP_06654932.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468980|gb|EFF11471.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 337

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           +L   +YL + F   ++ + S L  +L    +  + D          + +   + +IP L
Sbjct: 1   MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGIGWLKTIIPFL 52

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
           L+ M   I     Q    L    +K  F  ++   G+KRI+ +  +  F+K+ + II   
Sbjct: 53  LVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFA 112

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
             I +  + +   +   +  +  S+L      +  +++  L  +  + + D    Y  + 
Sbjct: 113 LAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
             +KM KQE+K E K+  GNP IK++++   +  +  ++    S + ++I NPTH A+ +
Sbjct: 173 KDMKMDKQEVKREYKEQEGNPEIKSKRRERHQEILSEQLKSDVSNSRLMIANPTHIAIGI 232

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            +    +  P++  +  N +A  +RK A E  IPI  +  LAR ++        +
Sbjct: 233 YFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 287


>gi|312958831|ref|ZP_07773350.1| type III secretion system rscU [Pseudomonas fluorescens WH6]
 gi|311286601|gb|EFQ65163.1| type III secretion system rscU [Pseudomonas fluorescens WH6]
          Length = 365

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 158/344 (45%), Gaps = 7/344 (2%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
                K    S+KK+ D   +G    S++      + A     LF     +      + +
Sbjct: 2   SDSGEKKHLASAKKLRDQRKKGQVAQSQDVGKLLVLTAISEIALFTAETSLQRFQQLMVL 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            +A  TQ  +  +  ++     +  S + L++    + +   + S  +Q   +     +K
Sbjct: 62  PMARLTQPFVRTLEEVLLEGLLVFFSFALLMV---GVAITVKLISSWMQFGILFAPETLK 118

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
             FKR++    +K+++S  +L+N + S  K  L+G ++ + +  +   +++  +++  S 
Sbjct: 119 LDFKRLNPLSQLKQMFSAQSLMNLLMSIAKAFLLGLVVYLVVWPSLGALINLATSDLQSY 178

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
           +       R +L   L  +  L ++D+    H +  +++M++ E+  E K   G+P +K 
Sbjct: 179 VLALIALFRYLLHACLGLLLVLALIDLVLQKHFFAKRMRMTQVEVVKEYKDMEGDPHVKG 238

Query: 245 RQKSIARSRIRHKMMEATSR---ATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +++S+A    + +      +   A +++ NPTH+A+AL Y   +   P+LV KG +  A+
Sbjct: 239 QRRSLAYQLAQEEPKVKLPKLEEADMLVVNPTHFAVALYYRPGKTPLPLLVDKGTDAGAR 298

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           ++   A   ++P+ +   LAR+L+      + IP    +AVA +
Sbjct: 299 RLIARAKAADVPVIQCVWLARTLY-TKKRGANIPRETLQAVALI 341


>gi|213859844|ref|ZP_03385548.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 242

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 120/244 (49%), Gaps = 2/244 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        +  
Sbjct: 1   MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAG 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L     R + D + I+  +  L  +A   ++P +   ++  + S ++    + + 
Sbjct: 60  MLSAGL-HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSG 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             ++P F +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +
Sbjct: 119 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWNHWPQMMRLMAES 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE K+S G+P
Sbjct: 179 PIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDP 238

Query: 241 IIKN 244
            +K 
Sbjct: 239 HVKG 242


>gi|293406351|ref|ZP_06650277.1| antigen surface presentation protein SpaS [Escherichia coli
           FVEC1412]
 gi|291426357|gb|EFE99389.1| antigen surface presentation protein SpaS [Escherichia coli
           FVEC1412]
          Length = 337

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           +L   +YL + F   ++ + S L  +L    +  + D          + +   + +IP L
Sbjct: 1   MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGIGWLKTIIPFL 52

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
           L+ M   I     Q    L    +K  F  ++   G+KRI+ +  +  F+K+ + II   
Sbjct: 53  LVCMFTTILVSWFQSKMQLATEAIKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFA 112

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
             I +  + +   +   +  +  S+L      +  +++  L  +  + + D    Y  + 
Sbjct: 113 LAIKLFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
             +KM KQE+K E K+  G+P IK++++   +  +  ++    S + ++I NPTH A+ +
Sbjct: 173 KDMKMDKQEVKREYKEQEGSPEIKSKRRERHQEILSEQLKSDVSNSRLMIANPTHIAIGI 232

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            +    +  P++  +  N +A  +RK A E  IPI  +  LAR ++        +
Sbjct: 233 YFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 287


>gi|82940565|emb|CAJ44294.1| putative flagellar biosynthetic transmembrane protein FlhB
           [Rhizobium leguminosarum bv. viciae]
          Length = 213

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 98/203 (48%), Positives = 151/203 (74%)

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
           F KS  K+++VG I+   L   YF  +D + ++P +IL      +RK++I++L+  A + 
Sbjct: 1   FGKSLFKVVVVGVILFFVLRSEYFGSIDAMFSDPQTILVRMMAAMRKIIIVMLIATAIVA 60

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
           + D+ W+ H W+++LKM++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+    RAT+
Sbjct: 61  IADLFWTRHHWFTELKMTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATL 120

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I NPTHYA+ALRY + ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F Q
Sbjct: 121 VIANPTHYAVALRYAREENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQ 180

Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350
           V I+S IP VFYKAVA+LI+++Y
Sbjct: 181 VSIDSVIPSVFYKAVAELIHRVY 203


>gi|27376933|ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
 gi|12620529|gb|AAG60805.1|AF322012_110 RhcU [Bradyrhizobium japonicum]
 gi|27350075|dbj|BAC47087.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
          Length = 345

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 149/347 (42%), Gaps = 7/347 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS     + K   P+ KK+ DA  +G +  S +     S  AC  +   ++  G      
Sbjct: 1   MS--STSEEKKLPPTPKKLRDARKKGQSARSSDLVSGVS--ACAGFGCLWWRAGAIEDKW 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              V L    Q +    +    L   L LS + +            + + L     +   
Sbjct: 57  QETVRLVDKLQEQPFTSAVPQALSGLLELSIATVAPLLAAAVTAALLANVLANGGFMFAS 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP  +++   +G+KRI S  + +   K+  K++L+G I  +++T ++  ++ ++   
Sbjct: 117 EPLKPKLEKLDPIKGLKRIVSKRSAIELGKTLAKVVLLGAIFFLTVTASWKALV-YLPVC 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                   F  V+ ++ +         + D+      +   ++M++ E K E K+  GNP
Sbjct: 176 GMGCFGFVFTEVKLLIGIAAGAFLVGGLADLLIQRWLFMQDMRMTETEAKRENKEQQGNP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K   + + +       +   SRAT+I+  P    + LRY++ E   PVLV +G+   A
Sbjct: 236 QVKREHRRLRQESANEAPL-GISRATLILRGPATL-IGLRYVRGETGVPVLVCRGEGEAA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            ++   A    + I E+  LAR L  +  + + +P  ++++VA+ +Y
Sbjct: 294 SQLLGEARALRLNIVEDNVLARQLLGKARLGNPVPSQYFESVAKALY 340


>gi|197286514|ref|YP_002152386.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|227357588|ref|ZP_03841941.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis
           ATCC 29906]
 gi|194684001|emb|CAR45289.1| putative type III secretion system protein [Proteus mirabilis
           HI4320]
 gi|227162298|gb|EEI47302.1| possible flagellar biosynthesis protein FlhB [Proteus mirabilis
           ATCC 29906]
          Length = 353

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 141/346 (40%), Gaps = 8/346 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK++D+  +G +  S+E          +IYL  F    +         LL  
Sbjct: 3   EKTEKPTQKKLDDSAKKGQSFKSKELVSGLVYFIGVIYL--FNQVKLDEFNQFYQSLLLH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
            T   L+    ++  L         +V+P +++  + G    L      L    +K  F 
Sbjct: 61  PTGISLKSYVEVISKL------FFDIVLPIIIVTFLSGAIPSLFSSHFKLATEAIKIDFN 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G K+I+SI  + +F+K+ + II+      + +  +   ++    A+   ++   
Sbjct: 115 HINPISGFKKIFSIRTIKDFLKTILFIIIFLITCYVFMILHMGEVVILYRADLEGVIDKW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              V   + +  +    + +L+I   +  +   + M K E+K E K   GNP IK+ ++ 
Sbjct: 175 CSLVVSFIFIFFILSIPILILNIIADFFLFIKDMMMEKHEVKQEHKNMEGNPEIKSVRRQ 234

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           + +  +   M      ++ +I NPTH A+ + +       P++     N  A  ++  A 
Sbjct: 235 LHQELLDEPMKRVIRDSSAVIVNPTHVAVGIYFDPDNGIMPIVSLSCTNAKALAVKAYAK 294

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKKI 354
           +   P+   P LAR L  +  +   I       V  ++  +   +I
Sbjct: 295 KVGTPVIRYPELARKLHHKYHLFEVIIDQDLLDVMDVLIWLKRVEI 340


>gi|317012581|gb|ADU83189.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           Lithuania75]
          Length = 302

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/275 (28%), Positives = 143/275 (52%), Gaps = 1/275 (0%)

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKR 138
            +  L   L+     L++P L++ ++    S ++Q   +     ++P F +++   G+K 
Sbjct: 17  SVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPKVIEPKFSKINPINGVKN 76

Query: 139 IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM 198
           ++S+  L++     +K+ L   +     +     +      N    L         ++  
Sbjct: 77  LFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKSKALLLISS 136

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKM 258
           +L     L  +D+     Q+ + LKM+KQE+KDE KQ  GNP IK + + +      +KM
Sbjct: 137 LLFLFFVLAFVDLVIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKM 196

Query: 259 MEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEP 318
           M+   +A +++TNPTHYA+AL++   E+  PV+VAKG + +A +++ IA EH+I I E  
Sbjct: 197 MQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENK 255

Query: 319 SLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           +LAR L+K V +N+ IP   ++AVA +  ++   +
Sbjct: 256 TLARELYKDVKLNATIPEELFEAVAIVFAQVAKLE 290


>gi|307947535|ref|ZP_07662868.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4]
 gi|307769353|gb|EFO28581.1| putative translocation protein y4yO [Roseibium sp. TrichSKD4]
          Length = 350

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 154/349 (44%), Gaps = 4/349 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  + K    +   +  A  +G    S++       L  L +++  +   +   ++
Sbjct: 1   MSGGDTSEEKNLPATEHTLRKAREKGQVAQSKDFVTMLITLGGLFFVIMAWPSFVRMFSN 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV-LN 119
            L   L    Q +LED    +F+++   L     +IP +++ ++  I + ++ +  +  +
Sbjct: 61  SLDFALR-GFQMELEDSYRPMFVVS--ILETLYSLIPLVVILVLTAILANILHKKGIPFS 117

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISA 179
           ++ + P FK+++   G K+++    +  F  S +K+++   +  + +      +L+    
Sbjct: 118 MHPIVPDFKKINPASGFKKMFGARGMTEFSVSLLKVLIWFVVAGMFIWLALPAILNSPIC 177

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
                       + K+++   + +    VLD+      +  + KM++ ++K E+K++ GN
Sbjct: 178 EFPCTTAVTNDLLIKIILAAAILLVIGGVLDLPLQEALFKKENKMTRTQLKKELKETMGN 237

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P  K+ +K   +   +            +I +    A+ALR+   +   P++VAKG+   
Sbjct: 238 PEYKSARKEAHKEMTQVNTTAGKDATANLIVSGADMAIALRFHAEDTPVPIVVAKGRGEQ 297

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
             ++     + ++PI  EP LA+ LF+ +     I    ++ +A LI +
Sbjct: 298 GDEILASGGQMSVPIEHEPELAQDLFRTLLPGQQIEERQFQKIALLIIR 346


>gi|317009219|gb|ADU79799.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7]
          Length = 302

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 131/248 (52%), Gaps = 1/248 (0%)

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
              S ++Q   +     ++P F +++   G+K ++S+  L++     +K+ L   +    
Sbjct: 44  AFLSNVLQFGWLFAPKVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFI 103

Query: 166 LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
            +     +      N    L         ++  +L     L  +D+     Q+ + LKM+
Sbjct: 104 FSLFLGELNHAALLNLQGQLLWFKSKALLLISSLLFLFFVLAFVDLVIKRRQYTNSLKMT 163

Query: 226 KQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
           KQE+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTHYA+AL++   E
Sbjct: 164 KQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALQFD-EE 222

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
           +  PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+AIP   ++AVA +
Sbjct: 223 HPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNAAIPEELFEAVAIV 282

Query: 346 IYKIYHKK 353
             ++   +
Sbjct: 283 FAQVAKLE 290


>gi|292899281|ref|YP_003538650.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199129|emb|CBJ46243.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
          Length = 365

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 140/341 (41%), Gaps = 12/341 (3%)

Query: 17  KKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED 76
           KK +D+  +G++   ++     ++++   +LL                +L   +   + D
Sbjct: 13  KKRKDSAKKGHSLKIKDFVTTVTLISGSYFLLHGMD--FSRFIDCYTNILIDVSSVNIND 70

Query: 77  ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
                  +  +      L  P + +  + G+ + L Q    +    +K +FK ++  EG+
Sbjct: 71  F------MLQMMYIFLGLSFPLIGICTLSGMIATLCQTRFTIATQALKLNFKALNPVEGL 124

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
           KRI+S+  +  F+KS   +++        +  +    L    A    ++        K +
Sbjct: 125 KRIFSMRTIKEFVKSLCYLMVFSCTCYNLIVNDLKHALVIHYAGIAQLIVSMLSLTVKAV 184

Query: 197 IMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH 256
            + + +   +   D    Y      LKM K E+K E K+S GNP IK+ ++   +  +  
Sbjct: 185 TIFIAYSLVVLCADFIMEYFLHVKDLKMDKHEVKQERKESDGNPQIKSARRRAHQELLSG 244

Query: 257 KMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316
           + M A  ++++I+ NPTH A+A+ +       P +  +  N  A+ +   A +  IP+  
Sbjct: 245 EEMAAVRKSSVIMVNPTHIAMAIFFNPELAPLPFIALRASNFKARAVLVYAEKIGIPVVR 304

Query: 317 EPSLARSLFKQVPINSAI---PPVFYKAVAQLIYKIYHKKI 354
              L R L+K    +S I         A+  ++  +   +I
Sbjct: 305 NIFLTRRLYKSYVQHSFISLNDDDL-MAIMDILIWLRQVEI 344


>gi|237678814|emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii]
          Length = 345

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 147/341 (43%), Gaps = 5/341 (1%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + K   P+ KK+ DA  +G +  S +     S  A L  L  ++  G         V L
Sbjct: 5   SEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCL--WWRAGAIEDKWHETVRL 62

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
               Q +    +    L   L LS + +            + + L     ++ L  +KP 
Sbjct: 63  IDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLKPK 122

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +++   +G+ RI S  + +   K+ VK++L+GT    ++T ++  ++ ++         
Sbjct: 123 LEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALV-YLPVCGMGCFG 181

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
             F  V+ +  +         + D+      +  +++M++ E K E K+  GNP +K   
Sbjct: 182 LVFTEVKLLAGIAGGAFLVGGLTDLLIQRWLFLQEMRMTETEAKRENKEQQGNPQVKREH 241

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           + + +       +    RA +I+T  T   + LRY++ E   P+LV +G++  A K+   
Sbjct: 242 RRLRQESANEAPL-GVHRANLILTGSTTL-VGLRYVRGETGVPILVCRGESETASKLLGE 299

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           A    + + ++  LAR L     + + +P  +++AVA+ +Y
Sbjct: 300 ARALGLKVVDDDVLARQLLGTAKLGNPVPSQYFEAVAKALY 340


>gi|227820507|ref|YP_002824478.1| translocation protein in type III secretion system, RhcU
           [Sinorhizobium fredii NGR234]
 gi|227339506|gb|ACP23725.1| translocation protein in type III secretion system, RhcU
           [Sinorhizobium fredii NGR234]
          Length = 345

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 150/349 (42%), Gaps = 11/349 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE    + K+   S KKI DA  +G    S +      +L   ++L +       S+  
Sbjct: 1   MSET--SEEKSLPASDKKIRDARRKGQVMHSPDMVSGIVVLFSTLFLFYVAP----SLQV 54

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQR-IPVL 118
            +  LL  A+       + + + L+ ++  A    V+P L + ++  + + +      V 
Sbjct: 55  KIERLLDEASHIYERPFADVWYRLSTIAADALWTTVLPILGITIVAILATNVAITKGFVF 114

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           +   + P F RV+   G+KRI S+ ++V+F K+  KI  +     +       ++    +
Sbjct: 115 SAEPLAPDFNRVNPASGLKRIASLKSVVDFGKALFKIAALSIAFAVVFHAGLGSLFQSPT 174

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                +   +   ++ +  + +     +  +D+      +  +++M++ E K E K + G
Sbjct: 175 CGFACLHATSLSMLKTITSIAIAAFVVMGAVDLFLQRWLFLREMRMTRSESKREHKDTEG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+I+  ++ +AR  +        + A ++I      ++ +RY++ E   P++V +    
Sbjct: 235 DPLIRQERRKLAR--LLGTTKTGLAGAVLLIGEEGAVSVGIRYVRDETPVPIVVCRAFGP 292

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            A  MR  A    IP   +  LA  L  + PI + +P   ++ VA  + 
Sbjct: 293 AASSMRAQARSRTIPFMADAKLAAEL-GKTPIGAPVPDRLFQEVANALV 340


>gi|13475308|ref|NP_106872.1| translocation protein in type III secretion system, hrcU
           [Mesorhizobium loti MAFF303099]
 gi|14026059|dbj|BAB52658.1| translocation protein in type III secretion system; HrcU
           [Mesorhizobium loti MAFF303099]
          Length = 345

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 140/346 (40%), Gaps = 7/346 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D+ + KT A + KK+ DA  +G  P S +        A L YL    S        
Sbjct: 1   MS--DSSEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYLWLRGSAIEDKCRE 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L     Q    D +    L+    L+ + +      L     + S L     V +L
Sbjct: 59  AL--LFVDKLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVLLASILANGGFVFSL 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F +++  +G+KR+ S  ++V   K+  K+ ++G   +  L   + TM+      
Sbjct: 117 EPMTPNFDKINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMVYLPF-C 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L       + ++ +    +    ++D+      +  +++M+K E+  E+K   G P
Sbjct: 176 GMGCLGLVVTGAKLLIGIGAGALLAAGLIDLLVQRALFLREMRMTKTEVTRELKDQQGAP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K+ ++ I         +     AT+I    T   + LRY++ E   PVLV +     A
Sbjct: 236 ELKSERRRIRDESADEPPL-GVHHATLIFKG-TAILIGLRYVRGETGVPVLVCRADGERA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             +   A    + I +   LA  L  +  +   IP  +++ VA+ +
Sbjct: 294 SHLLSEARALRLEIVDNDVLAHQLIGKTQLGRPIPMQYFEPVARAL 339


>gi|330963711|gb|EGH63971.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 348

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 152/345 (44%), Gaps = 6/345 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K++  + KK+ DA  +G    S++      IL C + +            + +  
Sbjct: 3   ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58

Query: 65  LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNH 122
           L+       +E  + +   LL H       + +P + + +   I + ++  R  V ++  
Sbjct: 59  LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITLPVVAVTVGAVILTNIVTMRGVVFSVEP 118

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +   +    +++       
Sbjct: 119 IQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G+P+I
Sbjct: 179 CIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K  ++   R            RA+++I +   + + +RY++ E   P++V +     +  
Sbjct: 239 KRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYVRGETPVPIVVCRAAPHDSAA 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           +   A    I  + + SLA ++ ++      +P   ++AVA  + 
Sbjct: 299 LLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAVADALV 343


>gi|237800778|ref|ZP_04589239.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023636|gb|EGI03693.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 348

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 153/344 (44%), Gaps = 4/344 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K++  + KK+ DA  +G    S++      IL C + +     P   +    L  
Sbjct: 3   ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLL-PRARAQVEALID 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNHV 123
           L A        D+     LL H       + +P + + +   I + ++  +  V ++  V
Sbjct: 62  LAALIYIEPFNDVWP--RLLDHAEQIVIGITLPVVAVTVGAVILTNIVTMKGVVFSVEPV 119

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
           +P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +   +    +++        
Sbjct: 120 QPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVMLLGLAFYVVGRQALQALMESSRCGEGC 179

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
           I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G+P+IK
Sbjct: 180 IESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMIK 239

Query: 244 NRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKM 303
             ++   R           +RA+++I +   + + +RY++ E   P++V +     +  +
Sbjct: 240 RERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGETPVPIVVCRAAQHESAVL 299

Query: 304 RKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
              A    I ++ + +LA S+ K+      +P   ++AVA  + 
Sbjct: 300 LAEATPLGIAVWPDAALAESIAKRSVAGDPVPENTFQAVADALV 343


>gi|330876191|gb|EGH10340.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 348

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 151/345 (43%), Gaps = 6/345 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K++  + KK+ DA  +G    S++      IL C + +            + +  
Sbjct: 3   ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58

Query: 65  LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNH 122
           L+       +E  + +   LL H       + +P +   +   I + ++  R  V ++  
Sbjct: 59  LIDLTALIYIEPFAEVWPRLLDHAEQIVIGITLPVVAFTVGAVILTNIVTMRGVVFSVEP 118

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +   +    +++       
Sbjct: 119 IQPDIKRINPGEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G+P+I
Sbjct: 179 CIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K  ++   R            RA+++I +   + + +RY++ E   P++V +     +  
Sbjct: 239 KRERQRQRREMQALATKLGLGRASLLIGDSGGWVVGVRYVRGETPVPIVVCRAAPHDSAA 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           +   A    I  + + SLA ++ ++      +P   ++AVA  + 
Sbjct: 299 LLAEAVPLGIARWSDASLAETIARRSVAGDPVPENTFQAVADALV 343


>gi|28211317|ref|NP_782261.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
 gi|28203757|gb|AAO36198.1| flagellar biosynthetic protein fliR/B [Clostridium tetani E88]
          Length = 539

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 137/275 (49%), Gaps = 1/275 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A ++KTE  +  K+++A  +G    S+E  L  ++L   + + F     I ++ + +   
Sbjct: 265 ASEDKTEEATPHKLQEARKKGQVAKSKEVGLAFTLLMSTLVISFLGQYAIENLQNVMTAF 324

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L      +L +  ++ ++   + + ++ +++P ++  M+ GI +  IQ   +     +KP
Sbjct: 325 LKDFMGMEL-NYKNLFYISLTIVMRSALIILPLIIPIMIMGIFANFIQTGFIFTKETLKP 383

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
             K+++   G K+I+S   LV  +K    + +VG +    L +NY  +L+  +     +L
Sbjct: 384 DIKKLNPVNGFKKIFSTRTLVELVKDLALVNVVGYVGYRFLKKNYIEILNLNNLRFPIML 443

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                   K    I L +  + V D  +   ++   +KMSKQE+K+E KQ  G+P IK +
Sbjct: 444 KAFKGIAVKAFFNITLVMIFIAVGDFIFQKKKYKKDMKMSKQEVKEEFKQQEGDPQIKGK 503

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
            +   R     +MM++   AT++ITNPTH A +L+
Sbjct: 504 IRQKQREMAMRRMMQSVPDATVVITNPTHIASSLK 538


>gi|323152631|gb|EFZ38907.1| flagellar biosynthetic protein flhB [Escherichia coli EPECa14]
          Length = 213

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 110/181 (60%)

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
           M+  ++ +P + + +A   V    ++++L +  +   D+ +       KL+MS+Q+I+DE
Sbjct: 1   MMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDE 60

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
            KQS G+P +K R + + R+  R +MM    +A +I+ NPTHY++AL+Y + +  AP +V
Sbjct: 61  FKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVV 120

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG  L+A ++R+I  E+N+P  E P LAR+L++   I   IP   Y AVA+++  ++  
Sbjct: 121 AKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 180

Query: 353 K 353
           K
Sbjct: 181 K 181


>gi|298487107|ref|ZP_07005157.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158350|gb|EFH99420.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 348

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 153/349 (43%), Gaps = 8/349 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  + + K++  S KK+ DA  +G    S++      IL C + +            +
Sbjct: 1   MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARA 54

Query: 61  DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118
            +  L+       +E  + +   LL H       + +P + + +   I + ++  R  V 
Sbjct: 55  QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVSAVILTNIVTMRGVVF 114

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L+     +   +    +++   
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P++K  ++   R            RA+++I +   + + +RY++ E   P++V +  + 
Sbjct: 235 DPMVKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            +  +   A    I  + + SLA  + ++      +P   ++AVA  + 
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343


>gi|71736693|ref|YP_274734.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71557246|gb|AAZ36457.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 348

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 153/349 (43%), Gaps = 8/349 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  + + K++  S KK+ DA  +G    S+E      IL C + +            +
Sbjct: 1   MSE--SSEEKSQPASDKKLRDARKKGQVAKSQELVSGMVILMCTLCISVLLP----KARA 54

Query: 61  DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118
            +  L+       +E  + +   LL H       + +P + + +   I + ++  R  V 
Sbjct: 55  QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L+     +   +    +++   
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK  ++   R            RA+++I +   + + +RY++ E   P++V +  + 
Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            +  +   A    I  + + SLA  + ++      +P   ++AVA  + 
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343


>gi|257487953|ref|ZP_05641994.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|320324520|gb|EFW80597.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328893|gb|EFW84892.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330985219|gb|EGH83322.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331008642|gb|EGH88698.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 348

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 153/349 (43%), Gaps = 8/349 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  + + K++  S KK+ DA  +G    S++      IL C + +            +
Sbjct: 1   MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLP----KARA 54

Query: 61  DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118
            +  L+       +E  + +   LL H       + +P + + +   I + ++  R  V 
Sbjct: 55  QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L+     +   +    +++   
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK  ++   R            RA+++I +   + + +RY++ E   P++V +  + 
Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            +  +   A    I  + + SLA  + ++      +P   ++AVA  + 
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343


>gi|289624372|ref|ZP_06457326.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646629|ref|ZP_06477972.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868644|gb|EGH03353.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 348

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 153/349 (43%), Gaps = 8/349 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE  + + K++  S KK+ DA  +G    S++      IL C + +            +
Sbjct: 1   MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARA 54

Query: 61  DLHVLLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVL 118
            +  L+       +E  + +   LL H       + +P + + +   I + ++  R  V 
Sbjct: 55  QVEALIDLTALIYIEPFAEVWPRLLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVF 114

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
           ++  ++P  KR++  EG KRI+++ NL+ F+K  VK++L+     +   +    +++   
Sbjct: 115 SIEPIQPDIKRINPTEGFKRIFAMRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSR 174

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G
Sbjct: 175 CGEGCIESTFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDG 234

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P+IK  ++   R            RA+++I +   + + +RY++ E   P++V +  + 
Sbjct: 235 DPMIKRERQRQRREMQALATKLGLGRASLMIGDSGGWVVGVRYVRGETPVPIVVCRASSQ 294

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            +  +   A    I  + + SLA  + ++      +P   ++AVA  + 
Sbjct: 295 DSSTLLAEALSLGIARWPDASLAEMIARRSVAGDPVPENTFQAVADALV 343


>gi|1648939|gb|AAB17687.1| putative [Sinorhizobium fredii]
          Length = 351

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 155/346 (44%), Gaps = 7/346 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  + K+   + KK+ DA   G  P S +    ++  A L YL  +    +     
Sbjct: 1   MS--DTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKC 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              +LL    Q    +++    L+  + L+ + +      LF    + + L  R  V +L
Sbjct: 57  REALLLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSL 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+F++++  + +KR+ S  + V   K+  K++++G   ++     + TM+ ++   
Sbjct: 117 EPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV-YLPVC 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                   F   ++++ +    +    ++D+      +  +++M+K EIK E+K+  G P
Sbjct: 176 GMGCFGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K  ++ I         +    RAT++    T   + LRY++ E   P+LV + +   A
Sbjct: 236 ELKGERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
             M + A    + I ++  LA  L     + +AIP  +++ +A+ +
Sbjct: 294 SDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPIARAL 339


>gi|24251294|gb|AAN46413.1| HrcU [Xanthomonas oryzae pv. oryzae]
          Length = 277

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 112/254 (44%), Gaps = 2/254 (0%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
            + KTE P+ KK+ DA  +G  P+S + +  + +   L+ +       +  + +   +  
Sbjct: 2   SEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIGF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
                    D + I   L H+ +    L++P L   ++ G+     Q     +L  V P 
Sbjct: 62  D--FSENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPK 119

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++   G+K+++S+ +L+N +K  +K IL+G ++ + +      ++      P  I  
Sbjct: 120 FDSLNPANGVKKLFSLRSLINLLKLIIKAILIGVVLWVGIRTLMPMIIGLAYETPLDISQ 179

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A+ T+  +  + +L    +   D    +  +    +MSK E K E K+S G+P IK ++
Sbjct: 180 IAWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKR 239

Query: 247 KSIARSRIRHKMME 260
           K I +     +   
Sbjct: 240 KGIRQGTGLRRPPP 253


>gi|254691439|ref|ZP_05154693.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str.
           870]
          Length = 210

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 137/207 (66%)

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
            F+KS  K++    I+ +   +      D ++ +P ++       V ++L+  +L IA +
Sbjct: 1   EFLKSLAKLLAASVIVFLVFFKGDSLFTDAVATDPGALPEFLRKNVVRLLVANVLAIAAI 60

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
              D+ WS   W  +L+M++QE+KDE+KQS G+P++K+R +S+ R R R +M+ A   AT
Sbjct: 61  AGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGRDRARRRMINAVPTAT 120

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA K+R+IA  H+IP+FE+  LAR+L+K
Sbjct: 121 LIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFEDVQLARALYK 180

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
           QV ++  I P FYKAVA+LI  I  ++
Sbjct: 181 QVNVDQMIAPEFYKAVAELIRIINTRR 207


>gi|46203826|ref|ZP_00050927.2| COG1377: Flagellar biosynthesis pathway, component FlhB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 196

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 113/193 (58%), Gaps = 1/193 (0%)

Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
           +    L   +     F    P + L        K++  +L   A + + D  +  H+W +
Sbjct: 1   MAGAILWHEHDRAESFAQLEPGAALQGTLSLALKMMGGMLAAYAGIALGDALYQRHRWRN 60

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
           +L+M+K+E+K E K+S G+P +K R + + +SR++ +MM A   AT+++TNPTH+A+ALR
Sbjct: 61  RLRMTKEEMKQEHKESEGSPEVKARIRQLRQSRLKKRMMAAVPTATVVVTNPTHFAVALR 120

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y      APV VAKG + +A ++R +A EH++P+ E P LAR+L   V +++ IP   Y+
Sbjct: 121 YEAG-MAAPVCVAKGVDSLALRIRAVAAEHDVPVMENPPLARALHATVEVDAEIPAEHYR 179

Query: 341 AVAQLIYKIYHKK 353
           AVA++I  +   +
Sbjct: 180 AVAEVIGFVLRLR 192


>gi|330953285|gb|EGH53545.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 348

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 155/345 (44%), Gaps = 6/345 (1%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K++  + KK+ DA  +G    S++      IL C + +            + +  
Sbjct: 3   ESSEEKSQPATDKKLRDARKKGQVAKSQDLVSGMVILLCTLCISVLLP----KARAQVEA 58

Query: 65  LLASATQRKLEDISHIV-FLLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNH 122
           L+  A    +E  + +   LL H       + +P + + +   I + ++  R  V ++  
Sbjct: 59  LIDLAALIYIEPFNDVWPRLLDHAEQIVIGITLPVVAVTVAAVILTNIVTMRGVVFSVEP 118

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++P  KR++  EG KRI+++ NL+ F+K  VK++L+G    +   +    +++       
Sbjct: 119 IQPDIKRINPAEGFKRIFAMRNLIEFLKGLVKVVLLGLAFYVVGRQALQALMESSRCGEG 178

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
            I    +  ++ ++  +L     +  +D+      +  ++KMS  E K E K   G+P+I
Sbjct: 179 CIESSFYLVLKPLVFTVLAAFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDVDGDPMI 238

Query: 243 KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKK 302
           K  ++   R           +RA+++I +   + + +RY++ E   P++V +     +  
Sbjct: 239 KRERQRQRREMQALATKLGLARASLMIGDAGGWVVGVRYVRGETPVPIVVCRAAQHESAA 298

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
           +   A    I ++ + SLA S+ K+      +P   ++AVA  + 
Sbjct: 299 LLADAAPLGIALWPDASLAESIAKRSVAGDPVPENTFQAVADALV 343


>gi|11276519|gb|AAG33887.1| HrcU [Pseudomonas syringae pv. tomato]
          Length = 311

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 5/299 (1%)

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPV 117
            + L  LLA   +         V L+    LS      +  + L M+  + S  +Q   +
Sbjct: 1   MNRLQALLALTFKGIERPFMSAVELIASEGLSVVLSFTLCSVGLAMLMRLISSWVQIGFL 60

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                +K   K++      K+++S  N++N + S +K + +G  +   +     T++   
Sbjct: 61  FAPKALKLDIKKIDPFSHAKQMFSGQNILNLLLSILKAVAIGATLYTQVKPALGTLILLA 120

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +++  + L+      + VL +IL  +  + ++D     +    KL+MS ++IK E KQS 
Sbjct: 121 NSDLATYLHALIELFQHVLRVILGLLLVIALIDFAMQKYFHAKKLRMSHEDIKKEYKQSE 180

Query: 238 GNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           G+P +K  ++ +A   +  +   A      A +++ NPTHYA+AL Y   E   P++  K
Sbjct: 181 GDPHVKGHRRQLAHEILNQEPSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPMIHCK 240

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G++  A  +   A +  IP+ +   LAR+L+K V +   IP     AV  +   +   +
Sbjct: 241 GEDEDALALIAQAKKAGIPVVQSIWLARTLYK-VNVGKYIPRPTLLAVGHIYKVVRQLE 298


>gi|253990923|ref|YP_003042279.1| type III secretion system EscU protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782373|emb|CAQ85537.1| Putative type III secretion system EscU protein [Photorhabdus
           asymbiotica]
          Length = 346

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 155/353 (43%), Gaps = 17/353 (4%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K   P++KK+ D   +G  P +  A    SI+   I +  F             V
Sbjct: 2   ESTEPKKYPPTAKKLRDLRKKGQFPKTELAEPTFSIVLFFISISLFI------------V 49

Query: 65  LLASATQRKLEDI--SHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
           LL S     +E I  + +      + +S + +++   +   +F I ++++    VLN   
Sbjct: 50  LLFSDFNYWVEFIVYADLSSGFDAILVSLTVMMVFFAIAKFIFFIVNWVVINKVVLNTKG 109

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI-SANP 181
           +  +  +++   G K     + + N  +  ++++ +  ++          +      +NP
Sbjct: 110 IGFNLDKINPVNGFKNTLGFDAITNSFRKVLELVFLIFLLKYVFDTYGVELNKLHKVSNP 169

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPI 241
              +Y   + +    ++++++   +  +D  +  +++  K +M+  E+K+E+K + G+P+
Sbjct: 170 SFFVYDLVYYIGGASLLMVIYGICVGAVDFLFESYRFQKKNRMTMTEMKNEMKDTEGSPL 229

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           IK  ++   R  +   M +   R T  + NPTH  + + Y    + AP++++   N +A 
Sbjct: 230 IKMERRHKMRELMNEPMTKG-RRPTFALANPTHILVPICYEPEIDQAPIVLSIYTNDMAL 288

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINS-AIPPVFYKAVAQLIYKIYHKK 353
             R       +PI E+  LAR +  ++      I   FY+ +A +I  +  KK
Sbjct: 289 GKRSYYESLGVPIIEDKPLARKILHKMKRGENYIDKEFYRDIALIIVALNRKK 341


>gi|323975952|gb|EGB71046.1| FlhB HrpN YscU SpaS family protein [Escherichia coli TW10509]
          Length = 233

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 106/203 (52%)

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
              K ++V  ++ ISL  N+   L   +      +         V+   ++      ++D
Sbjct: 1   MTAKSVVVLVMLWISLRNNFAAFLGLQALPFKLAMNEGLSLYASVMRNFVILFIFFALID 60

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
           +  +   +   LKM+KQE+K+E K   G P +K R + + R     ++ +   +A ++IT
Sbjct: 61  VPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKARVRRLQRQLAMGQIRKVVPKANVVIT 120

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NPTHYA+AL+Y Q+   AP +VAKG + IA  +R++A E+ + + E P LARS++    +
Sbjct: 121 NPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIRQVATENQVEVVEFPRLARSVYYTTQV 180

Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
           N  IP   Y+A+A ++  +   K
Sbjct: 181 NQQIPFQLYRAIAHVLTYVLQMK 203


>gi|261885614|ref|ZP_06009653.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 266

 Score =  221 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 126/271 (46%), Gaps = 5/271 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++     KTE P+ KK+EDA N+GN   S++ S F ++L     L+         + +
Sbjct: 1   MADD---QEKTEEPTGKKLEDARNKGNVAKSQDVSGFVTLLVGFAVLVGLMGFMGERLVN 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                          ++     +  H  L    +++P  +  M+ GI S ++Q   +  +
Sbjct: 58  LYLYYQGLIGVEITREL--FFKITIHSMLQTFLIILPIAICIMIAGIISNIMQFGFLFTV 115

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             + P+F ++   +GI  ++S+  L++ +K  +K+  V  +      +    +   I  +
Sbjct: 116 EPIMPNFSKIDPIKGIANLFSLKKLIDAVKIILKVSAVFGVAFYFFLQFVKELPHTIFFS 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             + L      +  +  ++LL    + + D+    +Q++  L+MSKQE+KDE KQ  G+P
Sbjct: 176 MFNQLLWLKEKMLILAGVMLLLFLIIAIADVFIVRYQYFKGLRMSKQEVKDEFKQMEGDP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            +K R + +     R +MM+    A ++ITN
Sbjct: 236 KVKGRIRQLQMQAARKRMMQNIPTADVVITN 266


>gi|16520047|ref|NP_444167.1| innermembrane protein RhcU; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2494576|sp|P55723|Y4YO_RHISN RecName: Full=Probable translocation protein y4yO
 gi|2182740|gb|AAB91954.1| innermembrane protein RhcU; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 345

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 151/342 (44%), Gaps = 7/342 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  + K+   + KK+ DA   G  P S +    ++  A L YL  +    +     
Sbjct: 1   MS--DTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLGYL--WLRGSVIEDKC 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              +LL    Q    +++    L+  + L+ + +      LF    + + L  R  V +L
Sbjct: 57  REALLLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSL 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+F +++  + +KR+ S  + V   K+  K++++G   ++     + TM+ ++   
Sbjct: 117 EPMKPNFDKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV-YLPVC 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                   F   ++++ +    +    ++D+      +  +++M+K EIK E+K+  G P
Sbjct: 176 GMGCFGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K  ++ I         +    RAT++    T   + LRY++ E   P+LV + +   A
Sbjct: 236 ELKGERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
             M + A    + I ++  LA  L     + +AIP  +++ +
Sbjct: 294 SDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335


>gi|3603323|gb|AAC35808.1| hrp type III pathway protein [Pseudomonas syringae pv. glycinea]
          Length = 325

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPV 117
              L  LLA + +      +  V L+    LS      +  + + M+  + S  +Q   +
Sbjct: 15  VDRLQALLALSFKGIDRSFAASVELIASEGLSVLLSFTLCSVGMAMLMRLVSNWMQIGFL 74

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
                +K    +++     K+++S  N++N + S +K + +G  + + +      ++   
Sbjct: 75  FAPKALKLDINKINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLA 134

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +++  +  +      R +L +IL  +  + ++D     +    KL+MS ++IK E KQS 
Sbjct: 135 NSDLTTYWHALVELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSE 194

Query: 238 GNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAK 294
           G+P +K  ++ ++   +  +   A      A +++ NPTHYA+AL Y   E   P++  K
Sbjct: 195 GDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPCETPLPLIHCK 254

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           G++  A  +   A    IP+     L R+L++   +   IP    +AV  +   +   
Sbjct: 255 GEDEEALALIARAKNAGIPVVHSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKMVRQL 311


>gi|19749331|gb|AAL98701.1| Y4yO [Sinorhizobium fredii]
          Length = 345

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 152/342 (44%), Gaps = 7/342 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  + K+   + KK+ DA   G  P S +    ++  A L YL  +    +     
Sbjct: 1   MS--DTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYL--WLRGSVIEDKC 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
              +LL    Q    +++    L+  + L+ + +      LF    + + L  R  V +L
Sbjct: 57  REALLLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSL 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +KP+F++++  + +KR+ S  + V   K+  K++++G   ++     + TM+ ++   
Sbjct: 117 EPMKPNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMV-YLPVC 175

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
                   F   ++++ +    +    ++D+      +  +++M+K EIK E+K+  G P
Sbjct: 176 GMGCFGVVFTGAKQLIGIGAGALLIGGLIDLLLQRALFLREMRMTKTEIKRELKEQQGTP 235

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
            +K  ++ I         +    RAT++    T   + LRY++ E   P+LV + +   A
Sbjct: 236 ELKGERRRIRNEMASEPPL-GVHRATLVYRG-TAVLIGLRYVRGETGVPILVCRAEGEAA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAV 342
             M + A    + I ++  LA  L     + +AIP  +++ +
Sbjct: 294 SDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIPMQYFEPI 335


>gi|304415257|ref|ZP_07395954.1| putative type III secretion system protein [Candidatus Regiella
           insecticola LSR1]
 gi|304282883|gb|EFL91349.1| putative type III secretion system protein [Candidatus Regiella
           insecticola LSR1]
          Length = 385

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 143/349 (40%), Gaps = 12/349 (3%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             NKTE P+ KK++D+  +G +  S++  +   IL    YL+   S     +      ++
Sbjct: 2   SSNKTEKPTQKKLKDSAKKGQSFKSKDFIIACLILCGAQYLISMGS--FVELMGAYRRVI 59

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           A+     +   +      T +     ++++P +LL +       L+Q   V+    +K +
Sbjct: 60  ANDFDYDIHRYT------TAVLWIGLQILLPIILLCVFASALPTLLQTGFVIATKALKFN 113

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F  ++  +G K+I+S+    + +KS + +        +        +   +   P+ +  
Sbjct: 114 FGAINPAKGFKKIFSLRTAKDAVKSLLYLATFFISALLVWHNKKGLLFQQLHGTPYDMTV 173

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                ++ ++   L+ I  + +LD    +  +   LKM KQE K E+K+  GNP IK+++
Sbjct: 174 VWGELLQAIIFTCLVCIIIILILDALAEFFLYIKDLKMDKQEFKREMKEQDGNPEIKSKR 233

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA----PVLVAKGQNLIAKK 302
           + +    +  ++      +  II NPTH A+ + Y      A    P+    G       
Sbjct: 234 RELHSELLSEQIKSDVKNSNFIIANPTHIAVGIYYRPDPETASITIPLCFGIGNQSACIS 293

Query: 303 MRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
            + +  ++         LAR + K     S I       + QL+  ++ 
Sbjct: 294 GKGVCQKNGCSYHPNVPLARRILKTHKRYSFISLDAIDEIIQLMIWLHQ 342


>gi|262360426|gb|ACY57147.1| type III secretion apparatus protein [Yersinia pestis D106004]
          Length = 215

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 92/198 (46%)

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           MKS +K+ ++  I    L +   +            L      +  +L  ++      ++
Sbjct: 1   MKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSL 60

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
           +D  +  +    +LKMS  E+K E K S G+P IK +++ +              R+T +
Sbjct: 61  MDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQHEVQSGSFATNVRRSTAV 120

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + NPTH+A+ L Y   E   P+++ KG +  A  +  +A +  IP+ E  +LAR+L + V
Sbjct: 121 VRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDV 180

Query: 329 PINSAIPPVFYKAVAQLI 346
                IP  F++ VA L+
Sbjct: 181 ACGDTIPEQFFEPVAALL 198


>gi|145298359|ref|YP_001141200.1| flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851131|gb|ABO89452.1| Flagellar biosynthetic protein FlhB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 281

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 4/217 (1%)

Query: 139 IYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           ++ +  +      + VKI+ +G  +      +   M   + A    ++Y     +  +LI
Sbjct: 42  VFGLLMVKESLASAMVKILTIGFTLDRDQAFDPNAMGAMLPALLRELVYPLG--LLWMLI 99

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
           ++   +  +  +D+ +       +LKM+KQE+KDE K S G P +K R + +       +
Sbjct: 100 ILCCALIPIVAIDVPFQTWNHTRQLKMTKQEVKDEFKDSEGKPEVKGRIRQLQMQMAMRR 159

Query: 258 MMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE 316
           MM    +A +IITNPTHY++AL+Y       AP +VAKG + IA K+R+IA E+ IPI  
Sbjct: 160 MMGDVPKADVIITNPTHYSVALKYDIAKPGAAPKVVAKGTDEIAMKIREIAREYEIPIMP 219

Query: 317 EPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            P+L R++F    I   IP   + AVAQ++  IY  K
Sbjct: 220 SPALTRAIFHSTEIGHEIPEGLFAAVAQVLAYIYQLK 256



 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ D    +TE P+ K+++ A  +G    S+E    S++LA +  LL        ++  
Sbjct: 1   MADTD--QERTEQPTGKRLQQAREKGQIARSKELGTASALLAAVFGLLMVKESLASAMVK 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV-IPGLLLFMMFGIGSYLIQRIPVLN 119
            L +   +  + +  D + +  +L  L       + +  +L+ +   +   +   +P   
Sbjct: 59  ILTIGF-TLDRDQAFDPNAMGAMLPALLRELVYPLGLLWMLIILCCALIPIVAIDVPFQT 117

Query: 120 LNH 122
            NH
Sbjct: 118 WNH 120


>gi|12083752|dbj|BAB20911.1| putative HrpN [Acidovorax avenae subsp. avenae]
          Length = 214

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
            F KS +K ++ G ++   +T     ++  +   P +    A+  + K+     L    +
Sbjct: 1   EFAKSVLKAVVFGAVLWHIVTGLVPLLVASVYLTPEASGKIAWSALLKLFSFAFLVFLVI 60

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRAT 266
             LD G  +  +    +MSK ++K E K S G+P +K   KS+          E    AT
Sbjct: 61  GPLDFGLQHWLFIRDQRMSKDDVKRENKDSEGDPHLKGHLKSLREEMATSPPQERVPGAT 120

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +++TNPTHYA+ALRY       P++VAKG +  A  +R +A  H+IP+   P LAR+L K
Sbjct: 121 VVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHK 180

Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349
            +P++  IP   ++AV+ ++  +
Sbjct: 181 -LPLDQPIPEELFEAVSVVLRWV 202


>gi|321472934|gb|EFX83903.1| hypothetical protein DAPPUDRAFT_315303 [Daphnia pulex]
          Length = 217

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 122/210 (58%), Gaps = 1/210 (0%)

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           +V F+K F K++++ TI      +  F    F S  P  I+  A   + ++L+ ++  + 
Sbjct: 1   MVEFLKGFGKLVIILTIAFFIFGKTNFPFQPFGSLAPQVIMPEASRLILQILLSLIAAMG 60

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI-RHKMMEATS 263
            L  LD G+ + + + +L MS+QE+KDE K    +  + +RQ+ + +       + +   
Sbjct: 61  VLAALDYGYQWFRVFRELYMSRQELKDEHKDLEKDASVISRQRQMQKELAQMRSLGDKIP 120

Query: 264 RATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARS 323
           +AT++ITNPTHYA+ALR+   E  AP ++AKG + +A+++R++A  H +P+ E P LA++
Sbjct: 121 KATVVITNPTHYAVALRWNPREMSAPQVIAKGTDRVAQRIRELAQHHFVPLVENPPLAQA 180

Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           L+K V I   I P  Y+AV+++I  +   +
Sbjct: 181 LYKSVKIGQEISPEHYRAVSEVIRYVLRIQ 210


>gi|332669212|ref|YP_004452220.1| type III secretion exporter [Cellulomonas fimi ATCC 484]
 gi|332338250|gb|AEE44833.1| type III secretion exporter [Cellulomonas fimi ATCC 484]
          Length = 400

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 150/353 (42%), Gaps = 9/353 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MSE     ++TE  + +++ +   +G    S++ S +  + A    L         +   
Sbjct: 1   MSE---GGDRTEKATPQRMREIRRKGGLGRSQDLSAWVGLGAAAAVLPLVVDRARAAALD 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +      A      D + +V +L     +    ++P   + ++  +     Q    L  
Sbjct: 58  QMAAFRDVAAD---PDGTDVVQVLGDGLGTILTTLLPLFAVGVVAAVAVSAAQGGVHL-- 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + ++     +  +    R+         +K+ +K   V  ++  ++      +L      
Sbjct: 113 HRLRLHADHLKPKGVASRLVGGQAWWQGIKTLLKTAAVALVLLAAVQAIAPALLASGRLP 172

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
              ++  A      +L   +     L V D+   + +   + +M+ +E+K+E K++ G+P
Sbjct: 173 LSHLIGIATDGTATLLRTGIAAGVLLAVADVVVVWRRNRKQTRMTLREVKEEHKRTEGDP 232

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++K   +S   +  R++MM   + A +++ NPTH A+ALRY      AP +VAKG   +A
Sbjct: 233 MLKGAIRSKQLAMSRNRMMAEVANADVVLVNPTHVAVALRYEPG-TGAPRVVAKGAGAVA 291

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            K+R  A +  +P+ E+  LAR+L     +   IP   + AVA+++  +   +
Sbjct: 292 AKIRSAASDARVPMVEDVPLARALHAACELGQEIPAHLFTAVARVLAFVMALR 344


>gi|256370976|ref|YP_003108800.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007560|gb|ACU53127.1| type III secretion exporter [Acidimicrobium ferrooxidans DSM 10331]
          Length = 390

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 6/348 (1%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A    TE P+ +K+E A  EG    S +   F  +L       F     +   +  +  +
Sbjct: 2   ARQEGTEEPTPRKLERARKEGMVARSVDLVSFVVLLIA----SFALPLAVRDASVRIGDV 57

Query: 66  LASATQRKLEDISHIVFLLTHLSLS-ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            A+A    +   S          L    +LV P  ++ ++      L Q         ++
Sbjct: 58  AAAAWSGAIPATSAGALRFLGTGLDLVVQLVGPVAVVAVVIVAVGNLAQVGLRFVPKRLR 117

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           P  +  S    ++RI+S    +   K+ VK++    +    ++ +   M    S+   + 
Sbjct: 118 PRAETFSPAANLRRIFSAQPGIEVAKAIVKLVATAAVAAAIVSSSIDAMAQGASSPLAAA 177

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKN 244
              A  ++  V ++ +L +    ++D+         +L+M++ E++DE+++  G+  +K 
Sbjct: 178 DAAAGASLELVRVVAVLGVVL-GIVDLVRQRRSLRRRLRMTRHEVRDELREHEGDLAVKA 236

Query: 245 RQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           R++ +AR  +R  M+   ++A +++ NPTH A+ALRY    + AP +VAKG + +A  +R
Sbjct: 237 RRRRLAREFVRRAMLADVAQADVVVVNPTHVAVALRYDPRRDRAPTVVAKGLDHLAMTIR 296

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           + A    +PI E+P LAR ++    +   IP   +  VA+L+  +Y  
Sbjct: 297 ERARAARVPIVEDPPLARVVYVASRVGEPIPASLFLVVARLLAFVYRL 344


>gi|85060041|ref|YP_455743.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius
           str. 'morsitans']
 gi|84780561|dbj|BAE75338.1| putative flagellar biosynthetic protein FlhB [Sodalis glossinidius
           str. 'morsitans']
          Length = 245

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 2/247 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D    K+EAP+  + E A  EG  P SRE +    +L     L    +     + +
Sbjct: 1   MAE-DIDLEKSEAPTQHRQEKAREEGQIPRSRELTSMLMLLVGCAMLWLDGAYLARQLAA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       +      +     L       +I      ++  +G+ ++      N 
Sbjct: 60  MLAQGL-HFDHGLIGKDRQSLTAAAPLLSQTVLALISLFAGLILVALGAPMLLGGITFNP 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +K   K+V+   G+KR++S   L    K+ +K ++ G +    L  N+  ML  +   
Sbjct: 119 SLIKFDIKKVNPLSGLKRMFSSQVLAELFKAILKAVVFGCVTGSFLWHNWPRMLHLVMEP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L  A + +   ++ I++ ++ +   D+ W       KL+M +Q+I+DE K   G+P
Sbjct: 179 AVPALGDAMWIITACMLFIIVGLSPIVGFDVFWQLWSHLKKLRMIRQDIRDEFKNQEGDP 238

Query: 241 IIKNRQK 247
            +KNR +
Sbjct: 239 HVKNRIR 245


>gi|115379113|ref|ZP_01466237.1| translocation protein in type III secretion [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363896|gb|EAU63007.1| translocation protein in type III secretion [Stigmatella aurantiaca
           DW4/3-1]
          Length = 265

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 1/256 (0%)

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
              L  P L   ++  +   L      LN+ HV P+ +R+S   G KR+ S+   V  +K
Sbjct: 1   MLGLSGPALGGALVASLAVSLAVAGVGLNMEHVAPNLERISPFAGWKRLLSVRAGVEGLK 60

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           + +   ++  ++   + E     L  +       L H    +  +L+ +   +  L   D
Sbjct: 61  ALLVSAVLAVLVWGEVREAGPEALRGVEGRGAEGLVHLLDRLEPLLLRLSGCLLLLGGAD 120

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIIT 270
              +  + +  L MS++E+K E ++S G+P  K ++K++ R   +        +A+ ++ 
Sbjct: 121 YALARARHFKDLCMSREEVKREYQESEGDPRHKAQRKALHRQLAQGGSARGVRKASAVVI 180

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NPTH A+ALRY   E +AP LVAK Q   A  +R  A    IP+  +  LARSL     +
Sbjct: 181 NPTHIAVALRYDAQECEAPYLVAKAQEAEALALRHEAQRRGIPVVRDVPLARSLI-SYDV 239

Query: 331 NSAIPPVFYKAVAQLI 346
              IP   Y+A A ++
Sbjct: 240 GEQIPEELYQAAAAVL 255


>gi|330862333|emb|CBX72493.1| hypothetical protein YEW_GP28240 [Yersinia enterocolitica W22703]
          Length = 225

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 102/194 (52%)

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
             + + +  +   +L   +      +   F     +L+  +  I     +DI  S + + 
Sbjct: 3   YTLYLMVKNSLPDLLRLQALPLQEAITEGFTLYHGILVYFIAIIVIFAAIDIPLSNYLFT 62

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALAL 279
            K+KM+KQE+K E K + GNP IK R + + R     ++ +    A +IITNPTH+++AL
Sbjct: 63  KKMKMTKQEVKQEHKSNDGNPEIKARVRQLQRQFAMGQINKTVPNADVIITNPTHFSVAL 122

Query: 280 RYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
           +Y   +  AP ++AKG++ IA  +R +A  ++I I E P LAR+++    +N  +P   Y
Sbjct: 123 KYAPEKASAPYIIAKGKDDIALYIRTVAKNNDIEIVEFPPLARAIYHTTKVNQQVPAQLY 182

Query: 340 KAVAQLIYKIYHKK 353
           +A AQ++  +   K
Sbjct: 183 RATAQVLTYVMQVK 196


>gi|153836050|ref|ZP_01988717.1| VcsU2 [Vibrio parahaemolyticus AQ3810]
 gi|149750804|gb|EDM61549.1| VcsU2 [Vibrio parahaemolyticus AQ3810]
          Length = 351

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 149/365 (40%), Gaps = 34/365 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ + K   P+ KK+ D   +G  P +  A     +                 +  
Sbjct: 1   MAE-ESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLEL-----------IVFTIIIIF 48

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119
            L+ L   + +     +   + +     +      + GL L  ++  I  +++    V++
Sbjct: 49  TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAIFEWVMINKAVIS 108

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTEN 169
              +     +++   G K I+ +  +    +SF K++           V  ++   L   
Sbjct: 109 TESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY-- 163

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
              +L+ I+  P+  +Y+  +++    +  L++   +  +D     + +  K +M+  E+
Sbjct: 164 ---LLNEINNYPY-FIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 219

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E+K++ G+P IK+ +K   R      + +   + T  + NPTH  + + Y       P
Sbjct: 220 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 278

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYK 348
           V++      +A + RK      IPI E   LAR+++ ++      +P  F+  VA +I  
Sbjct: 279 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISY 338

Query: 349 IYHKK 353
           +   K
Sbjct: 339 LKRLK 343


>gi|260362767|ref|ZP_05775636.1| protein VcsU2 [Vibrio parahaemolyticus K5030]
 gi|260880055|ref|ZP_05892410.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034]
 gi|260895172|ref|ZP_05903668.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466]
 gi|308085801|gb|EFO35496.1| protein VcsU2 [Vibrio parahaemolyticus Peru-466]
 gi|308091813|gb|EFO41508.1| protein VcsU2 [Vibrio parahaemolyticus AN-5034]
 gi|308112085|gb|EFO49625.1| protein VcsU2 [Vibrio parahaemolyticus K5030]
          Length = 351

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 149/365 (40%), Gaps = 34/365 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ + K   P+ KK+ D   +G  P +  A     +                 +  
Sbjct: 1   MAE-ESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLEL-----------IVFTIIIIF 48

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119
            L+ L   + +     +   + +     +      + GL L  ++  +  +++    V++
Sbjct: 49  TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAVFEWVMINKAVIS 108

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTEN 169
              +     +++   G K I+ +  +    +SF K++           V  ++   L   
Sbjct: 109 TESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY-- 163

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
              +L+ I+  P+  +Y+  +++    +  L++   +  +D     + +  K +M+  E+
Sbjct: 164 ---LLNEINNYPY-FIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 219

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E+K++ G+P IK+ +K   R      + +   + T  + NPTH  + + Y       P
Sbjct: 220 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 278

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYK 348
           V++      +A + RK      IPI E   LAR+++ ++      +P  F+  VA +I  
Sbjct: 279 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISY 338

Query: 349 IYHKK 353
           +   K
Sbjct: 339 LKRLK 343


>gi|28901209|ref|NP_800864.1| putative type III secretion system EscU protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|28809722|dbj|BAC62697.1| putative type III secretion system EscU protein [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 352

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 149/365 (40%), Gaps = 34/365 (9%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E ++ + K   P+ KK+ D   +G  P +  A     +                 +  
Sbjct: 2   MAE-ESTEPKKYPPTEKKLRDLRQKGQFPKTELAEPTLEL-----------IVFTIIIIF 49

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLN 119
            L+ L   + +     +   + +     +      + GL L  ++  +  +++    V++
Sbjct: 50  TLYYLFEYSGEWFSAVLYADITVGLFTGIDVLWWCVGGLALLKLVMAVFEWVMINKAVIS 109

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTEN 169
              +     +++   G K I+ +  +    +SF K++           V  ++   L   
Sbjct: 110 TESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLY-- 164

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
              +L+ I+  P+  +Y+  +++    +  L++   +  +D     + +  K +M+  E+
Sbjct: 165 ---LLNEINNYPY-FIYYLIYSIGAASVFYLVYGLCVGTVDFMAEKYHFLHKNRMTFTEM 220

Query: 230 KDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAP 289
           K+E+K++ G+P IK+ +K   R      + +   + T  + NPTH  + + Y       P
Sbjct: 221 KNELKETEGSPEIKSERKRQMREFAETPITKG-RQPTFALANPTHILVPVCYDPKIERRP 279

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYK 348
           V++      +A + RK      IPI E   LAR+++ ++      +P  F+  VA +I  
Sbjct: 280 VVLKICTESLALEERKRLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIISY 339

Query: 349 IYHKK 353
           +   K
Sbjct: 340 LKRLK 344


>gi|229529200|ref|ZP_04418590.1| Type III secretion inner membrane protein [Vibrio cholerae
           12129(1)]
 gi|229332974|gb|EEN98460.1| Type III secretion inner membrane protein [Vibrio cholerae
           12129(1)]
          Length = 350

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 152/362 (41%), Gaps = 33/362 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + K   P+ KK+ D   +G  P +  A     ++   I ++F            L+
Sbjct: 2   EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIF-----------TLY 50

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNH 122
            L   + +     +   + +     +      I GL L  ++  I  +++    V++   
Sbjct: 51  YLFEYSGEWLSAVLYADIDVGLATGVDVLWWCIGGLALLKLVMAIFEWVMINKAVISTEA 110

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTENYFT 172
           +     +++   G K I+ +  +    +SF K++           V  ++   L +    
Sbjct: 111 LGLKMDKINPVNGAKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLYQ---- 163

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            L+ I+  P+  +Y+  ++V       L++   +  +D     + +  K +M+  E+K+E
Sbjct: 164 -LNEINNYPY-FIYYLMYSVGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNE 221

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K++ G+P IK  +K   R  +   + +   R T  + NPTH  + + Y       PV++
Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVL 280

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYH 351
                 +A + RK     +IPI E   LAR+++ ++      +P  F++ VA +I  +  
Sbjct: 281 KICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVIISNLKR 340

Query: 352 KK 353
           +K
Sbjct: 341 QK 342


>gi|229515162|ref|ZP_04404622.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21]
 gi|254285284|ref|ZP_04960249.1| VcsU2 [Vibrio cholerae AM-19226]
 gi|71480619|gb|AAZ32241.1| VcsU2 [Vibrio cholerae non-O1/non-O139]
 gi|150424556|gb|EDN16492.1| VcsU2 [Vibrio cholerae AM-19226]
 gi|229347867|gb|EEO12826.1| Type III secretion inner membrane protein [Vibrio cholerae TMA 21]
          Length = 350

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 152/362 (41%), Gaps = 33/362 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + K   P+ KK+ D   +G  P +  A     ++   I ++F            L+
Sbjct: 2   EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIF-----------TLY 50

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNH 122
            L   + +     +   + +     +      I GL L  ++  I  +++    V++   
Sbjct: 51  YLFEYSGEWLSAVLYADIDVGLATGVDVLWWCIGGLALLKLVMAIFEWVMINKAVISTEA 110

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTENYFT 172
           +     +++   G K I+ +  +    +SF K++           V  ++   L +    
Sbjct: 111 LGLKMDKINPVNGAKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLYQ---- 163

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            L+ I+  P+  +Y+  +++       L++   +  +D     + +  K +M+  E+K+E
Sbjct: 164 -LNEINNYPY-FIYYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNE 221

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K++ G+P IK  +K   R  +   + +   R T  + NPTH  + + Y       PV++
Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVL 280

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYH 351
                 +A + RK     +IPI E   LAR+++ ++      +P  F++ VA +I  +  
Sbjct: 281 KICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDVAVIISNLKR 340

Query: 352 KK 353
           +K
Sbjct: 341 QK 342


>gi|254224928|ref|ZP_04918543.1| Type III secretory pathway, component EscU [Vibrio cholerae V51]
 gi|125622616|gb|EAZ50935.1| Type III secretory pathway, component EscU [Vibrio cholerae V51]
          Length = 350

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 153/362 (42%), Gaps = 33/362 (9%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
            ++ + K   P+ KK+ D   +G  P +  A     ++   I ++F            L+
Sbjct: 2   EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTIIIIF-----------TLY 50

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNH 122
            L   + +     +   +++     +      I GL L  ++  I  +++    V++   
Sbjct: 51  YLFEYSGEWLSAVLYADIYVGLATGVDVLWWCIGGLALLKLVMVIFEWVMINKAVISTEA 110

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLTENYFT 172
           +     +++   G K I+ +  +    +SF K++           V  ++   L +    
Sbjct: 111 LGLKMDKINPVNGAKNIFGVEAIS---RSFRKVLELLFLLFLLKYVADVLGSQLYQ---- 163

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
            L+ I+  P+  +Y+  +++       L++   +  +D     + +  K +M+  E+K+E
Sbjct: 164 -LNEINNYPY-FIYYLMYSIGAASAFYLVYGICVGTVDFMAEKYHFLQKNRMTFTEMKNE 221

Query: 233 IKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLV 292
           +K++ G+P IK  +K   R  +   + +   R T  + NPTH  + + Y       PV++
Sbjct: 222 LKETEGSPEIKYERKRRMREVMETPITQG-RRPTFALANPTHILVPICYDPKIERVPVVL 280

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYH 351
                 +A + RK     +IPI E   LAR+++ ++      +P  F++ +A +I  +  
Sbjct: 281 KICTESLALEERKRLEAMDIPIIENIPLARAMYSKMKQGEDFLPKEFFRDIAVIISNLKR 340

Query: 352 KK 353
           +K
Sbjct: 341 QK 342


>gi|262274307|ref|ZP_06052118.1| type III secretion inner membrane protein HrpY [Grimontia hollisae
           CIP 101886]
 gi|262220870|gb|EEY72184.1| type III secretion inner membrane protein HrpY [Grimontia hollisae
           CIP 101886]
          Length = 344

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 154/366 (42%), Gaps = 43/366 (11%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISR------EASLFSSILACLIYLLFFFSPGIYS 57
            ++ + K   P+ KK+ D   +G  P +       E  +F+ I+   +Y LF +S   +S
Sbjct: 2   EESTEPKKYPPTEKKLRDLKQKGQFPKTELAEPTLELVVFTVIIILALYYLFEYSSEWFS 61

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
                  +L +  Q  L+    +++            +    LL ++     +++    V
Sbjct: 62  ------AILQADVQVGLDSGYDVLW----------WCIGGLALLKLVMAAFEWVMINKAV 105

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL----------VGTIITISLT 167
           ++   +     +++   G K I+ I  +    +S  KI+           V  ++   L 
Sbjct: 106 VSTEALGLKMDKINPVNGAKNIFGIEAIS---RSLRKILELLFLLFLLKYVADVLGSKLY 162

Query: 168 ENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
           + +      I+  P+  +Y+   ++    +  L+F   +  +D     + +  K +M+  
Sbjct: 163 QLHE-----INNYPY-FIYYLMLSILAASVFYLIFGVCVGTVDFMAEKYHFMQKNRMTFT 216

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E+K+E+K++ G+P IK  +K   R  +   + +   R    + NPTH  + + Y      
Sbjct: 217 EMKNELKETEGSPEIKYERKRRMREVMETPITQG-RRPNFALANPTHILVPICYDPKIER 275

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLI 346
            PV++      +A + R      +IPI E   LAR+++ ++      +PP F++ VA +I
Sbjct: 276 VPVVLKICTESLALEERSRLETMDIPIIENVPLARAIYTKMKQGEDFLPPEFFRDVAIII 335

Query: 347 YKIYHK 352
            ++  K
Sbjct: 336 SRLKRK 341


>gi|86157785|ref|YP_464570.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774296|gb|ABC81133.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 355

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 85/351 (24%), Positives = 165/351 (47%), Gaps = 7/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +  +N+TE  S++++  A +EG  P+  +A+L + +    + L+         +  
Sbjct: 1   MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALTLVAQARGLGGGLAE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +     S  +     +  +       +LS             + G  + L Q       
Sbjct: 61  LMRHAAGSVDRAPFATLPALAARPAAAALSVCA-------AAALAGAAATLAQTRGGCWP 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   R+     + R  S + L++   +  K+  +G     +  +    +   + A 
Sbjct: 114 RLAAPDPSRLLQPGRLLRPLSRDFLLDLALALAKVGAIGAAAWSAARDGVARLPALLGAA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L   F  V +V + +LL  A L + ++G +  ++  K +M+K E K E+K+  G+P
Sbjct: 174 PGEQLALVFSLVARVALPVLLAAAALALAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ R++   R  +R++      RA  ++ NPTH A+ALRY + E  AP + AKG+  +A
Sbjct: 234 LVRGRRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++MR +A EH +P+ ++  LAR L+++V +   IP   YKAVA ++  +Y 
Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344


>gi|153215439|ref|ZP_01950023.1| VcsU2 [Vibrio cholerae 1587]
 gi|153827954|ref|ZP_01980621.1| VcsU2 [Vibrio cholerae 623-39]
 gi|124114733|gb|EAY33553.1| VcsU2 [Vibrio cholerae 1587]
 gi|148876535|gb|EDL74670.1| VcsU2 [Vibrio cholerae 623-39]
          Length = 346

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 148/357 (41%), Gaps = 25/357 (7%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K   P+ KK+ D   +G  P +  A     +    I ++             L  
Sbjct: 2   ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFIFCIIIVI-----------TLFN 50

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNHV 123
           L   A +     I   + +      S     I  L+ F ++  +  +++    V++   +
Sbjct: 51  LFEYANEWITSAIQSDINVGIDNMFSILGYAIGFLMFFKIVMAVFEWVMINKSVISTEAL 110

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT------IITISLTENYFTMLDFI 177
                +++   G K I+ I  +    +S  K++ +         +   L    + + +  
Sbjct: 111 GFKIDKINPVNGAKNIFGIEAIS---RSSRKVLELLFLLFLLKYVFDVLGSELYKLNEIN 167

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           +      +Y+  +++  V +  L++   +  +D     + ++ K +M+  E+K+E+K++ 
Sbjct: 168 NYP--YFIYYLLYSIGAVSLFYLVYGVCIGSVDYLAEKYHFHQKNRMTFTEMKNELKETE 225

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQN 297
           G+P IK  ++   R  ++  + +   + T  + NPTH  + + Y       PV++     
Sbjct: 226 GSPEIKYERRRRMREVMKTPVKKG-RKPTFALANPTHILVPIYYDPKVEKIPVVLKISTE 284

Query: 298 LIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHKK 353
            +A   RK   E  IPI E   LARSL++++      +P  FY+ VA +I  +  +K
Sbjct: 285 SLALAERKRLEEQGIPIIENIPLARSLYRKMKSGEDFLPKEFYRDVAVIISTLNRQK 341


>gi|220917693|ref|YP_002492997.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955547|gb|ACL65931.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 355

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 166/351 (47%), Gaps = 7/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +  +N+TE  S++++  A +EG  P+  +A+L + +    + L          ++ 
Sbjct: 1   MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALALGAQARALGGGLSE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +    AS  +            L  L+L  +   +       + G  + L Q       
Sbjct: 61  LMRQAAASVDRTPFSS-------LPALALRPASAALAVCAAAALAGAAATLAQTRGGFWP 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   R+     + R  S + L++   +  K+  +G     +  +    +   + A 
Sbjct: 114 RLAAPDPSRLLQPGRLLRPLSRDFLLDLALALAKVAALGAAAWTAARDGLARLPALLGAA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L   F  V +V + +LL  A L   ++G +  ++  K +M+K E K E+K+  G+P
Sbjct: 174 PGEQLAMVFALVARVALPVLLAAAALAAAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ +++   R  +R++      RA  ++ NPTH A+ALRY + E  AP + AKG+  +A
Sbjct: 234 LVRGQRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++MR +A EH +P+ ++  LAR L+++V +   IP   YKAVA ++  +Y 
Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344


>gi|197122901|ref|YP_002134852.1| type III secretion exporter [Anaeromyxobacter sp. K]
 gi|196172750|gb|ACG73723.1| type III secretion exporter [Anaeromyxobacter sp. K]
          Length = 355

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 166/351 (47%), Gaps = 7/351 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ +  +N+TE  S++++  A +EG  P+  +A+L + +    + L          ++ 
Sbjct: 1   MADAEDQENRTEPASAQRLARARDEGQVPLGHDAALAAGLAGAALALGAQAHALGGGLSE 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            +    AS  +            L  L+L  +   +       + G  + L Q       
Sbjct: 61  LMRHAAASVDRTPFSS-------LPALALRPATAALAVCAAAALAGAAATLAQTRGGFWP 113

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   R+     + R  S + L++   +  K+  +G     +  +    +   + A 
Sbjct: 114 RLAAPDPSRLLQAGRLLRPLSRDFLLDLALALAKVAALGAAAWTTARDGLARLPALLGAA 173

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
           P   L   F  V +V + +LL  A L   ++G +  ++  K +M+K E K E+K+  G+P
Sbjct: 174 PGEQLAVVFALVARVALPVLLAAAALAAAELGLARWRFARKHRMTKDEAKREVKEDEGDP 233

Query: 241 IIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           +++ +++   R  +R++      RA  ++ NPTH A+ALRY + E  AP + AKG+  +A
Sbjct: 234 LVRGQRRRRHRELLRNQARLEVPRADALVVNPTHVAVALRYRRDEGRAPRVTAKGKGELA 293

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           ++MR +A EH +P+ ++  LAR L+++V +   IP   YKAVA ++  +Y 
Sbjct: 294 RQMRALAREHGVPVVQDVPLARLLYRKVKVGREIPAQTYKAVAAVLAFVYR 344


>gi|304412856|ref|ZP_07394454.1| type III secretion exporter [Shewanella baltica OS183]
 gi|307306020|ref|ZP_07585765.1| type III secretion exporter [Shewanella baltica BA175]
 gi|304348773|gb|EFM13193.1| type III secretion exporter [Shewanella baltica OS183]
 gi|306910893|gb|EFN41320.1| type III secretion exporter [Shewanella baltica BA175]
          Length = 348

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 151/361 (41%), Gaps = 26/361 (7%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPIS------REASLFSSILACLIYLLFFFSPG 54
           MS N++ + K   P+ KK+ +   +G  P +       E  +F+ I    IY +F  S  
Sbjct: 1   MS-NESTEPKKYPPTEKKLRELRKKGQFPKTELAEPTMELVVFAVIFIGTIYFVFDSSND 59

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            + V                   + I   L  +    +  +   L++ +     S+++  
Sbjct: 60  WFEVMLY----------------ADISTGLDIIYTVIAWGIFILLMIKLAMAAISWVMLN 103

Query: 115 IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTML 174
             V+N   +    +++S   G K I+ I  +   ++  +++I +  ++          + 
Sbjct: 104 KSVINTESLGLKMEKISPVTGAKNIFGIEAISRSLRKVLELIFLLFLLKYVFDIGGAELT 163

Query: 175 DFIS-ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
                 N    +Y+    V  V ++  ++  +L  +D     + +  K +M+  E+K+E+
Sbjct: 164 RLAQINNVPYFIYNLMLYVGLVSLLFFVYGVSLGCVDFMAESYHFNHKNRMTFTEMKNEM 223

Query: 234 KQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVA 293
           K++ G+P +K+ +K   R  +   M +     T  I NPTH  + + Y +  +  PV++ 
Sbjct: 224 KETEGSPEMKSERKRQMREVMDAPMTKG-RTPTFAIANPTHILVPICYDRMIDKVPVVLK 282

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHK 352
                 A   R+     NIPI E   LAR+ +K +      IP  FY+ +A ++ ++  +
Sbjct: 283 ITTESFALDERRRLEALNIPILEHIGLARAFYKSMRTGEDYIPKEFYRHIAFILLELNKQ 342

Query: 353 K 353
           +
Sbjct: 343 E 343


>gi|229138469|ref|ZP_04267058.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
 gi|228645006|gb|EEL01249.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
          Length = 259

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 124/263 (47%), Gaps = 14/263 (5%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVSVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FDQIGKN-----TDSTEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N  T++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLETIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGK 236

Query: 246 QK---------SIARSRIRHKMM 259
           +K          + R  +  +++
Sbjct: 237 RKTLCTPYCKGQLRRRWMAQRLL 259


>gi|171319013|ref|ZP_02908140.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
 gi|171095768|gb|EDT40721.1| type III secretion exporter [Burkholderia ambifaria MEX-5]
          Length = 250

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 109/248 (43%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K+E P+  ++  A  EG    SR+ +   +     + L   F  G  +    +  +L  
Sbjct: 3   EKSEQPTDNRLRQARREGQISKSRDLTQALAGAMWPLALAGTFYLGFGTAVRVMQGVLDM 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +    + + I F ++ + +    L +   L+  +  I   L+Q   +L++  + P+  
Sbjct: 63  IGEGAAREPTRIDFAVSRVIVPTITLSVGVALVGAVTAIAMELLQTKGLLSVKPIVPNLG 122

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++    +K I+S+  LV+  K+ VK+  +GT   I +      +    + +  +IL   
Sbjct: 123 KLNPISQLKNIFSLRTLVDLAKNLVKVTAIGTCTLIVIRLGLPDLAGLAAVDAPAILAVT 182

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + K+       +  L  +D+G+  +++   LKM+K E+K + KQ  G+P+IK  ++ 
Sbjct: 183 THLLFKIATASAGVLVVLAAIDVGYQKYEYIKGLKMTKDEVKRDYKQQEGDPLIKGERRR 242

Query: 249 IARSRIRH 256
           +       
Sbjct: 243 LHAEMADR 250


>gi|260757056|ref|ZP_05869404.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str.
           870]
 gi|260677164|gb|EEX63985.1| flagellar biosynthetic protein FlhB [Brucella abortus bv. 6 str.
           870]
          Length = 165

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/162 (48%), Positives = 119/162 (73%)

Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
           + ++L+  +L IA +   D+ WS   W  +L+M++QE+KDE+KQS G+P++K+R +S+ R
Sbjct: 1   MVRLLVANVLAIAAIAGFDLAWSRIHWRQELRMTRQEVKDELKQSEGDPLVKSRLRSLGR 60

Query: 252 SRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311
            R R +M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA K+R+IA  H+
Sbjct: 61  DRARRRMINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHS 120

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IP+FE+  LAR+L+KQV ++  I P FYKAVA+LI  I  ++
Sbjct: 121 IPVFEDVQLARALYKQVNVDQMIAPEFYKAVAELIRIINTRR 162


>gi|228900351|ref|ZP_04064580.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
 gi|228859238|gb|EEN03669.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
          Length = 259

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 119/246 (48%), Gaps = 5/246 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + +K + +  EGN   S++ +   SIL   + + FF     + + + + VL
Sbjct: 2   AKDNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGFEIANSVAVL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
                +      +        + +   ++  P L+L   F + +Y+IQ   + +   +KP
Sbjct: 62  FNQIGKN-----TDSTEYFYLMGMLLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVIKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
              R++ +    R++S  +LV+ +KS   + L+G +  +   +N   ++  I  N  + L
Sbjct: 117 KASRINPKNYFTRLFSRKSLVDILKSLFYMGLIGYVAYVLFKKNLEKIVSMIGFNWTASL 176

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
                 ++ + + IL+ +  L+++D  +   ++   +KM K+E+K E K + G+P +K +
Sbjct: 177 TEIIRQIKFIFLAILIILIVLSIIDFIYQRWEYEQDIKMKKEEVKREHKDNEGDPQVKGK 236

Query: 246 QKSIAR 251
           +K++  
Sbjct: 237 RKTLCM 242


>gi|330895854|gb|EGH28140.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 224

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           ++N + S +K I +G  + + +     T++   +++  +  +      R +L +IL  + 
Sbjct: 1   MLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHALVELFRHILRVILGLLL 60

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA--- 261
            + ++D     +    KL+MS ++IK E KQS G+P +K  ++ +A+  +  +   A   
Sbjct: 61  AIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEILNQEPSAAPKP 120

Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
              A +++ NPTHYA+AL Y   E   P++  KG++  A  +   A +  IP+ +   L 
Sbjct: 121 VEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLT 180

Query: 322 RSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           R+L++   +   IP    +AV  +   +   
Sbjct: 181 RTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 210


>gi|270487694|ref|ZP_06204768.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM
           D27]
 gi|270336198|gb|EFA46975.1| putative flagellar biosynthesis protein FlhB [Yersinia pestis KIM
           D27]
          Length = 161

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 83/132 (62%)

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           +KM+KQE+K E K + GNP IK+R + + R     ++ +    A +IITNPTH+++AL+Y
Sbjct: 1   MKMTKQEVKQEHKNNDGNPEIKSRVRQLQRQYAIGQINKTVPSADVIITNPTHFSVALKY 60

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
              +  AP +VAKG++ IA  +R IA +H I I E P LAR+++    +N  IP   Y+A
Sbjct: 61  APEKASAPYIVAKGKDDIALYIRSIAQKHKIEIVEFPPLARAIYHTTKVNQQIPAQLYRA 120

Query: 342 VAQLIYKIYHKK 353
           +AQ++  +   K
Sbjct: 121 IAQVLTYVMQIK 132


>gi|14422432|dbj|BAB60839.1| epaS1 [Escherichia coli]
          Length = 243

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 8/243 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + ++     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYVVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IAR 251
             R
Sbjct: 235 RIR 237


>gi|154175036|ref|YP_001408825.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus
           525.92]
 gi|112803672|gb|EAU01016.1| 1-deoxy-d-xylulose-5-phosphate synthase [Campylobacter curvus
           525.92]
          Length = 139

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 89/127 (70%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSKQE+KDE KQ  G+P +K R + +     + +MM+   +A ++ITNPTHYA+A+RY +
Sbjct: 1   MSKQEVKDEYKQMEGDPQVKGRIRRMQMQAAKRRMMQNVPQADVVITNPTHYAVAVRYDK 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           +++ APV++AKG +++A ++RKIA EH + I+E P LAR L++   +   IP   ++AVA
Sbjct: 61  SKDSAPVILAKGVDMMALQIRKIALEHGVQIYENPPLARELYRVCEVEDTIPAELFRAVA 120

Query: 344 QLIYKIY 350
           +++  +Y
Sbjct: 121 EVLSFVY 127


>gi|157159225|ref|YP_001464194.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A]
 gi|209920314|ref|YP_002294398.1| putative type III secretion protein [Escherichia coli SE11]
 gi|256019342|ref|ZP_05433207.1| surface presentation of antigens protein SpaS [Shigella sp. D9]
 gi|293449182|ref|ZP_06663603.1| type III secretion protein SctU [Escherichia coli B088]
 gi|300815712|ref|ZP_07095936.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 107-1]
 gi|307310523|ref|ZP_07590171.1| type III secretion exporter [Escherichia coli W]
 gi|331678844|ref|ZP_08379518.1| type III secretion protein EprS [Escherichia coli H591]
 gi|332280456|ref|ZP_08392869.1| type III secretion protein EprS [Shigella sp. D9]
 gi|157081255|gb|ABV20963.1| FlhB/HrpN/YscU/SpaS family protein [Escherichia coli E24377A]
 gi|209913573|dbj|BAG78647.1| putative type III secretion protein [Escherichia coli SE11]
 gi|291322272|gb|EFE61701.1| type III secretion protein SctU [Escherichia coli B088]
 gi|300531641|gb|EFK52703.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 107-1]
 gi|306909418|gb|EFN39913.1| type III secretion exporter [Escherichia coli W]
 gi|320202503|gb|EFW77073.1| surface presentation of antigens protein SpaS [Escherichia coli
           EC4100B]
 gi|323377251|gb|ADX49519.1| type III secretion exporter [Escherichia coli KO11]
 gi|324119899|gb|EGC13778.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1167]
 gi|331073674|gb|EGI44995.1| type III secretion protein EprS [Escherichia coli H591]
 gi|332102808|gb|EGJ06154.1| type III secretion protein EprS [Shigella sp. D9]
          Length = 243

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 8/243 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +  F+K+ + I+     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IAR 251
             R
Sbjct: 235 RIR 237


>gi|221271473|dbj|BAH15025.1| putative type III secretion system apparatus protein VscU2 [Vibrio
           parahaemolyticus]
 gi|328469635|gb|EGF40571.1| putative type III secretion system EscU protein [Vibrio
           parahaemolyticus 10329]
          Length = 346

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 150/356 (42%), Gaps = 23/356 (6%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K   P+ KK+ D   +G  P +  A     +    I ++      ++S+    + 
Sbjct: 2   ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFVFCIIIVIT----LHSLFEYTNE 57

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            ++SA Q  +      +F +   ++             ++  +  +++    V++   + 
Sbjct: 58  WISSAIQSDINVGIDNMFSILGYTIGF------LAFFKIVMAVFEWVMINKSVISTEALG 111

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT------IITISLTENYFTMLDFIS 178
               +++   G K I+ +  +    +S  K++ +         +   L    + + +  +
Sbjct: 112 FKIDKINPVNGAKNIFGVEAIS---RSSRKVLELLFLLFLLKYVFDVLGAELYKLNEINN 168

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
                 +Y+  +++  V +  L++   +  +D     + ++ K +M+  E+K+E+K++ G
Sbjct: 169 YP--YFIYYLLYSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNELKETEG 226

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNL 298
           +P IK  ++   R  +   + +   + T  + NPTH  + + Y       PV++      
Sbjct: 227 SPEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLKISTES 285

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHKK 353
           +A   RK   E  IPI E   LARSL++ +      +P  FY+ VA +I  +  +K
Sbjct: 286 LALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQK 341


>gi|213021563|ref|ZP_03336010.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 243

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 102/244 (41%), Gaps = 3/244 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E K   G+P +K R++ 
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE 239

Query: 249 IARS 252
           +   
Sbjct: 240 MQSE 243


>gi|260899851|ref|ZP_05908246.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037]
 gi|308107387|gb|EFO44927.1| protein VcsU2 [Vibrio parahaemolyticus AQ4037]
          Length = 346

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 145/355 (40%), Gaps = 21/355 (5%)

Query: 5   DAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV 64
           ++ + K   P+ KK+ D   +G  P +  A     +    I ++      +      +  
Sbjct: 2   ESTEPKKYPPTEKKLRDLKKKGQFPKTELAEPTLELFVFCIIIVITLHSLLEYTNEWISS 61

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            + S     ++++  I+                     ++  +  +++    V++   + 
Sbjct: 62  AIQSDINVGIDNMFSILGYTIGF----------LAFFKIVMAVFEWVMINKSVISTEDLG 111

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTI-----ITISLTENYFTMLDFISA 179
               +++   G K I+ +  +    +S  K++ +  +         +       L+ I+ 
Sbjct: 112 FKIDKINPVNGAKNIFGVEAIS---RSSRKVLELLFLLFLLKYVFDVLGAKLYKLNEINN 168

Query: 180 NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGN 239
            P+  +Y+   ++  V +  L++   +  +D     + ++ K +M+  E+K+E+K++ G+
Sbjct: 169 YPY-FIYYLLNSIGAVSLFYLVYGVCVGSIDYLAEKYHFHQKNRMTFTEMKNELKETEGS 227

Query: 240 PIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLI 299
           P IK  ++   R  +   + +   + T  + NPTH  + + Y       PV++      +
Sbjct: 228 PEIKYERRRRMREVMESPVTKG-RKPTFAVANPTHILVPISYEPKIEKIPVVLKISTESL 286

Query: 300 AKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN-SAIPPVFYKAVAQLIYKIYHKK 353
           A   RK   E  IPI E   LARSL++ +      +P  FY+ VA +I  +  +K
Sbjct: 287 ALSERKRLEEQGIPIIENIPLARSLYRNMKSGEDFLPKEFYRDVAVIISTLNRQK 341


>gi|255030633|ref|ZP_05302584.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28]
          Length = 197

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 103/186 (55%)

Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
           +  I   ++  T++ +   N    L   F   +   + + L IA + +LD  +  + +  
Sbjct: 1   MAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKK 60

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALR 280
            L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPTH ++ +R
Sbjct: 61  GLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMR 120

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y +T++ AP L+ KG++ +A  +R++A    +P+     LARS++     +  I    YK
Sbjct: 121 YDKTKDHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYK 180

Query: 341 AVAQLI 346
            V +++
Sbjct: 181 DVIEVM 186


>gi|226327763|ref|ZP_03803281.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198]
 gi|225203467|gb|EEG85821.1| hypothetical protein PROPEN_01636 [Proteus penneri ATCC 35198]
          Length = 139

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M++QEIKDE KQ  G+P +K R +    +  R +MM     A +I+TNPTHYA+AL+Y  
Sbjct: 1   MTRQEIKDEFKQQEGDPQLKARIRQQQHAMSRRRMMADVPNADVIVTNPTHYAVALQYN- 59

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            +  AP ++AKG   IA K+++I  E+ IP+ E P LAR+L++   I  AIP   Y AVA
Sbjct: 60  DKMTAPKVLAKGAGAIALKIKEIGAENRIPLLEAPPLARALYRHSEIGHAIPSTLYAAVA 119

Query: 344 QLIYKIYHKK 353
           +++  +Y  K
Sbjct: 120 EVLAWVYQLK 129


>gi|256024634|ref|ZP_05438499.1| surface presentation of antigens protein SpaS [Escherichia sp.
           4_1_40B]
 gi|300950611|ref|ZP_07164513.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 116-1]
 gi|300958192|ref|ZP_07170346.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 175-1]
 gi|300315144|gb|EFJ64928.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 175-1]
 gi|300450091|gb|EFK13711.1| putative surface presentation of antigens protein SpaS [Escherichia
           coli MS 116-1]
 gi|309703219|emb|CBJ02554.1| type III secretion system protein [Escherichia coli ETEC H10407]
 gi|323935780|gb|EGB32083.1| FlhB HrpN YscU SpaS family protein [Escherichia coli E1520]
          Length = 243

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 8/243 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK    
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +   +K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSDW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IAR 251
             R
Sbjct: 235 RIR 237


>gi|301643802|ref|ZP_07243839.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 146-1]
 gi|301077835|gb|EFK92641.1| surface presentation of antigens protein SpaS family protein
           [Escherichia coli MS 146-1]
          Length = 243

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 8/243 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK    
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLVTEAVKFKLD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++   G+KRI+ +  +   +K+ + II     I +  + +   +   +  +  S+L   
Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFFALAIKVFWSNHKSLLFKTLDGDIISLLSGW 174

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++ 
Sbjct: 175 GEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234

Query: 249 IAR 251
             R
Sbjct: 235 RIR 237


>gi|153846242|ref|ZP_01993844.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
 gi|149744950|gb|EDM56290.1| flagellar biosynthetic protein FlhB [Vibrio parahaemolyticus
           AQ3810]
          Length = 150

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 79/125 (63%)

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDA 288
           +KDE K++ G P +K R + + R   + +MM    +A +I+TNP HY++ALRY Q  + A
Sbjct: 1   VKDEYKETEGKPEVKGRIRMLQREAAQRRMMADVPQADVIVTNPEHYSVALRYKQKTDRA 60

Query: 289 PVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           PV++AKG + +A K+R++A EH+I I   P LAR+L+    +   IP   + AVAQ++  
Sbjct: 61  PVVIAKGTDHMAMKIREVAREHDITIVPAPPLARALYHTTELEQEIPDGLFTAVAQVLAF 120

Query: 349 IYHKK 353
           ++  K
Sbjct: 121 VFQLK 125


>gi|116515090|ref|YP_802719.1| hypothetical protein BCc_150 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256944|gb|ABJ90626.1| type III protein export, membrane component [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 371

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 156/348 (44%), Gaps = 1/348 (0%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           + +NKTE  +  KI+     G    S + + F  +        +     I+     L +L
Sbjct: 5   SQENKTEEATPNKIKKFKKNGIFQSSHDLNSFFIL-LFFFSFFYINKKFIFFYFLKLFIL 63

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
             S     +                     +   +      I S ++    +  +  +  
Sbjct: 64  SFSFQTNIINQPHFFFDSFFQNIKFLLIFFLILFIGIFFILIISPVLIYKEITKIKFLNF 123

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
           +   +++   +K+    + ++ F  SF KIILV  +  I +   YF    F S +  S +
Sbjct: 124 NLNFLNILNNVKKKSLFDLIIEFFFSFFKIILVFFVSFIFVKTMYFKKKYFYSYSFFSNI 183

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNR 245
           +  +  V + + ++L+    + ++D    Y + ++ LKM+ QEIKDE K+  GNPIIK R
Sbjct: 184 FLGYKFVYRFISLLLMIFLIIAIIDSSIKYFKHFNNLKMTIQEIKDEQKELDGNPIIKQR 243

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
            + + +  +R  +     ++ +II +  ++A+A++Y    N  P++ AKG   +A ++ K
Sbjct: 244 IRFLMKQTLRKSVFSQVIKSNVIIYDSVNFAVAIQYNIHLNSTPIISAKGSGKVALRIIK 303

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IA E+NIPIF   S+A+ L+    I + I    + ++A+++   +  K
Sbjct: 304 IAEENNIPIFFSNSIAKYLYNNFFIGNNISVNLHYSIAKILAWAWKLK 351


>gi|255019035|ref|ZP_05291161.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           F2-515]
          Length = 193

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 112/193 (58%)

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           +++P +++ ++FG+ +Y +Q   + +   VKP FKR++     KR++S+  +V  +K+ +
Sbjct: 1   MLMPIMVMVVIFGLMNYGVQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALL 60

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
            I L+  +  I   ++  T++ +   N    L   F   +   + + L IA + +LD  +
Sbjct: 61  LITLLSYVAYIGFRDHLDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFY 120

Query: 214 SYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPT 273
             + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPT
Sbjct: 121 QRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPT 180

Query: 274 HYALALRYIQTEN 286
           H ++ +RY +T++
Sbjct: 181 HISVVMRYDKTKD 193


>gi|323166469|gb|EFZ52233.1| surface presentation of antigens protein spaS [Shigella sonnei 53G]
          Length = 250

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 104/245 (42%)

Query: 107 IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISL 166
           +   L+Q   VL    +K  F  ++  +G+K+I+SI  +  F KS + +I++        
Sbjct: 1   MLPTLVQTKFVLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFW 60

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
             +   +   + ++   +        + +++  L F   + +LD    +  +   + M K
Sbjct: 61  INDRKIIFSQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDK 120

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QEIK E  +  G+   K+R++ +    +  +       + +++ NPTH A+ + +     
Sbjct: 121 QEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIA 180

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +     N  A  +RK A E  IP   +  LAR L+K     S +       V +LI
Sbjct: 181 PAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLI 240

Query: 347 YKIYH 351
             +  
Sbjct: 241 VWLEQ 245


>gi|190894062|ref|YP_001984356.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
 gi|190699723|gb|ACE93806.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
          Length = 265

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 110/263 (41%), Gaps = 1/263 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ND  + KT  PS  K++    EG  P S+E  +  S+LA  +Y+ +     +   T 
Sbjct: 1   MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPAILEDFTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L SA +  L D   +    T ++L    + +P         + S L  +   ++ 
Sbjct: 61  SFDSGLQSAGRADLSDAVTVGLSETGVAL-LDLIWLPLATGLAATILVSILDGQGFPVSF 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            H+   F R++  EGIKR++S+ ++  F+K  VK +L+ T    ++     ++       
Sbjct: 120 KHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAILYFLNSIFWSPLCG 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +  +L++    +      DI  S   +  + +M+K E + E K + G+P
Sbjct: 180 EACTLSATAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEARREYKDTQGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEATS 263
            +K+ ++ I              
Sbjct: 240 KLKSARRQIGAEMRSSPPRRQGP 262


>gi|21492901|ref|NP_659976.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
 gi|21467326|gb|AAM54989.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
          Length = 265

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 111/261 (42%), Gaps = 1/261 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M++ND  + KT  PS  K++    EG  P S+E  +  S+LA  +Y+ +     +   T 
Sbjct: 1   MAKNDDTEEKTLPPSRVKLDRLRREGQVPRSKEIPVAISVLAIAVYVTWGLPDILEDFTR 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
                L SA +  + D   +    T ++L    + +P  +      + S L  +   ++ 
Sbjct: 61  SFDAGLQSAARADVSDAVTVGLSETGVAL-LDLIWLPLAMGLAATILVSILDGQGFPVSF 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
            H+   F R++  EGIKR++S+ ++  F+K  VK +L+ T    ++     ++       
Sbjct: 120 KHMSFDFTRLNPFEGIKRLFSLASIAEFVKGLVKFVLLATAGGGAILYFLNSIFWSPLCG 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
               L      +  +L++    +      DI  S   +  + +M+K E + E K + G+P
Sbjct: 180 EACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALFRHEHRMTKTEARREYKDTQGDP 239

Query: 241 IIKNRQKSIARSRIRHKMMEA 261
            +K+ ++ I            
Sbjct: 240 KLKSARRQIGAEMRSSPPRRQ 260


>gi|207109438|ref|ZP_03243600.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 157

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 96/146 (65%), Gaps = 1/146 (0%)

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
            +D+     Q+ + LKM+KQE+KDE KQ  GNP IK + + +      +KMM+   +A +
Sbjct: 1   FIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANV 60

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           ++TNPTHYA+AL++   E+  PV+VAKG + +A +++ IA EH+I I E  +LAR L+++
Sbjct: 61  VVTNPTHYAVALQFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRE 119

Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
           V +N+AIP   ++AVA +  ++   +
Sbjct: 120 VKLNAAIPEELFEAVAIVFAQVAKLE 145


>gi|284007676|emb|CBA73401.1| surface presentation of antigens protein SpaS,YscU,EscU,HrcU,SsaU
           [Arsenophonus nasoniae]
          Length = 275

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 116/257 (45%)

Query: 98  GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            + +  +  I   LIQ   +L    +K  FK++ + +GIKR+     L N  K+ + + +
Sbjct: 1   MIFISALAAIIPSLIQSKFILATEAIKLDFKKLDIVQGIKRLVDKRALKNLFKALLFLAI 60

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
             +     +     T+L         I+Y       K ++  LLF   +  LD    Y  
Sbjct: 61  FISSCYFFIQSYQSTLLFTQRKTIWHIIYDWRILTLKFVLFFLLFSLPILFLDALCEYFL 120

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL 277
            +S++KM K E+K E K++ GNP IK+ ++   +  +  +  +A +++++I+ NPTH A+
Sbjct: 121 HHSEMKMEKHEVKREYKENEGNPEIKSARRGAHQELLNAETKQAIAQSSMILANPTHIAI 180

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
            + +    +  P++  +  N  A  ++  A +  IPI     LAR ++ +  +   +   
Sbjct: 181 GIYFDPDNSILPLVAVRMANQYALAVQAYAKQIGIPIVRNIKLARQIYHRYRLYETVVKQ 240

Query: 338 FYKAVAQLIYKIYHKKI 354
               V  +   +   ++
Sbjct: 241 DLLDVIDIFIWLKQVEM 257


>gi|217032176|ref|ZP_03437675.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128]
 gi|216946166|gb|EEC24775.1| hypothetical protein HPB128_186g42 [Helicobacter pylori B128]
          Length = 153

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 91/139 (65%), Gaps = 1/139 (0%)

Query: 215 YHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTH 274
             Q+ + LKM+KQE+KDE KQ  GNP IK + + +      +KMM+   +A +++TNPTH
Sbjct: 4   RRQYTNSLKMTKQEVKDEYKQQEGNPEIKAKIRQMMVKNATNKMMQEIPKANVVVTNPTH 63

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           YA+AL++   E+  PV+VAKG + +A +++ IA EH+I I E  +LAR L++ V +N+ I
Sbjct: 64  YAVALKFD-EEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATI 122

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           P   ++AVA +  ++   +
Sbjct: 123 PEELFEAVAIVFAQVAKLE 141


>gi|315301911|ref|ZP_07872923.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596]
 gi|313629719|gb|EFR97840.1| flagellar biosynthetic protein FlhB [Listeria ivanovii FSL F6-596]
          Length = 162

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 91/151 (60%)

Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIR 255
            + + L IA + +LD  +  + +   L+MSKQEIKDE+K S G P +K RQ+SIAR  ++
Sbjct: 1   FLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQ 60

Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
             + +  + AT ++ NPTH ++ +RY + ++ AP L+AKG++ +A  +R++A    +P+ 
Sbjct: 61  GSITKKMADATFVVNNPTHISVVMRYDKAKDHAPKLLAKGEDELALFIRQVAETDEVPMI 120

Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
               LARS++     +  I    YK V +++
Sbjct: 121 TNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 151


>gi|171323057|ref|ZP_02911702.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
 gi|171091551|gb|EDT37164.1| flagellar biosynthetic protein FlhB [Burkholderia ambifaria MEX-5]
          Length = 216

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 106/211 (50%), Gaps = 2/211 (0%)

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
           +  +++  ++ VK+ +  T+    + +               +          +   +L+
Sbjct: 1   MQTVLDAARACVKLGVYCTLAYRCIADAVRAASH-AGLTAAGLARTLGSASFALATQLLI 59

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRH-KMME 260
             A  TV D      ++  +++MS+ E+K E KQ  G+P IK R++ + R  ++  + + 
Sbjct: 60  AAALFTVFDYALVRRRFAKQMRMSRHEVKQEFKQHDGDPRIKQRRRQLQRGLLQRSRSLR 119

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
               A +++TNPTHYA+ LRY   E  AP +V+KG    A ++RK+A+ H + I E P+L
Sbjct: 120 GMRGADVLVTNPTHYAIGLRYTPAEMAAPTIVSKGAGEFALRLRKLAFIHRVQIVEAPAL 179

Query: 321 ARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           AR LF+   +++ IPP  + A A +  ++  
Sbjct: 180 ARQLFRHGALDTEIPPQLFVATAAIYLRVRR 210


>gi|218673114|ref|ZP_03522783.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56]
          Length = 137

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/127 (56%), Positives = 104/127 (81%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           M++ E+K+E KQ+ G+P +K+RQ+S+ R R R +M+    RAT++I NPTHYA+ALRY +
Sbjct: 1   MTRHEVKEENKQAQGDPFVKSRQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAR 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            ENDAPV++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA
Sbjct: 61  EENDAPVVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVA 120

Query: 344 QLIYKIY 350
           +LI+++Y
Sbjct: 121 ELIHRVY 127


>gi|197121152|ref|YP_002133103.1| type III secretion exporter [Anaeromyxobacter sp. K]
 gi|196171001|gb|ACG71974.1| type III secretion exporter [Anaeromyxobacter sp. K]
          Length = 343

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 149/347 (42%), Gaps = 8/347 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             N+TE P+ +++ +A   G   +SRE +  +++   L  L           T++L  +L
Sbjct: 2   SGNRTEQPTPRRLREARRRGEVAVSRELTGAAALAGGLAALAVSAPGA----TAELGAML 57

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +A      + +     L   + +  RL +P     +  G G+  +Q  P L+L  + P 
Sbjct: 58  RAALAAANGEPAGPAAALQGAAAAVLRLSLPACGAALAAGAGAAALQAGPGLSLAALAPR 117

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +R+    G++R+ S   L        K  ++  +    L     ++       P + L+
Sbjct: 118 LERLDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALPRLGP-AALW 176

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A   +  +   +    A L  LD+     +    L M++ E++ E ++  G+P+ +  +
Sbjct: 177 RAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDEGDPLHRAER 236

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R+ +    +   +       NPTH A+AL + +    AP +VAKG    A ++R  
Sbjct: 237 QRRHRALLEAPAVARATVVV---VNPTHLAVALHHDRRGGGAPRVVAKGAGEAAARIRSA 293

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A    +P+  + +LAR+L +   +   IP   Y+A A ++  +Y  +
Sbjct: 294 ARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLYGLE 340


>gi|330975860|gb|EGH75926.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 175

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 4/162 (2%)

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
            +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ +A+  
Sbjct: 1   HILRVILGLLLAIAMIDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLAQEI 60

Query: 254 IRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEH 310
           +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +   A + 
Sbjct: 61  LNQEPSAAPKPVEDADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKA 120

Query: 311 NIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            IP+ +   L R+L++   +   IP    +AV  +   +   
Sbjct: 121 GIPVVQSIWLTRTLYRS-KVGKYIPRPTLQAVGHIYKVVRQL 161


>gi|254439657|ref|ZP_05053151.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307]
 gi|198255103|gb|EDY79417.1| hypothetical protein OA307_4527 [Octadecabacter antarcticus 307]
          Length = 176

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 5/150 (3%)

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA-----RSRIRHKMMEAT 262
           + D+ W  +Q   + KM+ QE+KDE K++ G+P +K + + +      R++ R   M+  
Sbjct: 1   MFDVVWQQYQHNQEQKMTLQEVKDESKETEGSPELKAKIRRLQMTAGKRAKERRAAMDKV 60

Query: 263 SRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLAR 322
             +T IITNPTH+A+AL+Y      AP ++A G+   A ++ +I  E  + +F    LAR
Sbjct: 61  PTSTAIITNPTHFAVALKYEVGTPGAPEILAMGRGHQAHEIIRIGTESGVTVFRNELLAR 120

Query: 323 SLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           +LF    I   IP   Y AVA ++  IY  
Sbjct: 121 ALFFAGNIGEEIPSPLYTAVASVLAFIYQL 150


>gi|226327764|ref|ZP_03803282.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198]
 gi|225203468|gb|EEG85822.1| hypothetical protein PROPEN_01637 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 2/221 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   KTE P+  K E A  +G    S+E S    IL  +  L          + +
Sbjct: 1   MAE-DSDLEKTEEPTPHKREKAKKDGQIVRSKELSSVLMILGGVSLLWMSGGFITRELYA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L     +     + + + ++     L   A   + P  L  +   IG   +      + 
Sbjct: 60  MLTEGF-TFNHHLIGNENLLIPRFGSLIKQAVFALSPVFLGLVFVAIGGSALLGGINFSS 118

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +K   K+ +   G+KRI+S+N L    K+ +K   VG   T+ L  N+  +L  I+  
Sbjct: 119 KSIKFDPKKWNPISGLKRIFSMNALAELFKAILKSTFVGIAATVFLWHNWNDILHLITLP 178

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
           P S L +A   +   + + +  +  +   DI +       K
Sbjct: 179 PLSALANAMQLLIFAVYITVFMLIPMVAFDIIFQIRSHLKK 219


>gi|222082192|ref|YP_002541557.1| type III secretion system translocation protein [Agrobacterium
           radiobacter K84]
 gi|221726871|gb|ACM29960.1| type III secretion system translocation protein [Agrobacterium
           radiobacter K84]
          Length = 268

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 108/266 (40%), Gaps = 3/266 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS+ND  + K+  PS  K++    EG    S+E  +  S+LA   YL +     +     
Sbjct: 1   MSKNDDTEEKSLPPSRVKLDRLRREGQVARSKEIPVAISVLAIAAYLAWALGDILRDFAR 60

Query: 61  DLHVLLASA--TQRKLEDISHIVFLLTHLS-LSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
              V   +A  T     D    +  +T+++ +    L +P LL   +    S L  +   
Sbjct: 61  IFGVGFEAAGLTGSPQADPGFPLTAVTNMAEILFGILWVPMLLGLAITIAVSILDGQGFP 120

Query: 118 LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
           ++  H+     R++   GI +++S+ NLV F+K  VK+IL+      ++      +    
Sbjct: 121 VSTKHMNFDLNRLNPASGIMKLFSVTNLVEFLKGIVKVILLSVAGGGAVLYFLNGIFWAP 180

Query: 178 SANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
                  L  A   +  ++++    +      D+  S   +  + +M+K E + E K + 
Sbjct: 181 LCGEACSLSVAAHLIGTIVVVAAAIMLAAAFFDLSISRLLFRREHRMTKTEARREHKDTQ 240

Query: 238 GNPIIKNRQKSIARSRIRHKMMEATS 263
           G+P +K+ ++ +              
Sbjct: 241 GDPHLKSARRRVGAEMRNAPPRREKP 266


>gi|86157128|ref|YP_463913.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773639|gb|ABC80476.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 343

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 149/346 (43%), Gaps = 8/346 (2%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            N+TE P+ +++ +A   G   +SRE +  ++    L   L   +       ++L  +L 
Sbjct: 3   GNRTEQPTPRRLREARRRGEVAVSRELTGAAA----LAGGLAALAASAPGAAAELGAMLR 58

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +A              L   + +  RL +P     ++ G  +  +Q  P L+L  + P  
Sbjct: 59  AALAAAGGAPGSPAAALQGAASAVLRLSLPACGGALLAGAAAAALQAGPGLSLAALAPRL 118

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
           +R+    G++R+ S + L       VK  ++  +    L     ++       P + L+ 
Sbjct: 119 ERLDPARGLRRLLSTSQLAAAALGLVKAAVLAALACGWLAGAAPSLAALPRLGP-AALWR 177

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +   +  +   +    A L  LD+     +    L M++ E++ E ++  G+P+ +  ++
Sbjct: 178 SPAVLGGLTWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDEGDPLHRAERQ 237

Query: 248 SIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              R+ +    +   +       NPTH A+AL + + +  AP +VAKG    A ++R  A
Sbjct: 238 RRHRALLEAPAVARATVVV---VNPTHLAVALHHDRRDGGAPRVVAKGAGDAAARIRSAA 294

Query: 308 YEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
               +P+  + +LAR+L +   +   IP   Y+A A ++  +Y  +
Sbjct: 295 RRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLYGLE 340


>gi|211939072|pdb|2W0R|A Chain A, Crystal Structure Of The Mutated N263d Yscu C-Terminal
           Domain
          Length = 144

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 75/136 (55%)

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
             +LKMSK EIK E K+  G+P IK++++   +      M E   R+++++ +PTH A+ 
Sbjct: 1   IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVADPTHIAIG 60

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           + Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP   
Sbjct: 61  ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120

Query: 339 YKAVAQLIYKIYHKKI 354
            +A A+++  +  + I
Sbjct: 121 IEATAEVLRWLERQNI 136


>gi|222446917|pdb|2JLH|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia
           Pestis Yscu N263a Mutant
          Length = 144

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 74/136 (54%)

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
             +LKMSK EIK E K+  G+P IK++++   +      M E   R+++++  PTH A+ 
Sbjct: 1   IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAPTHIAIG 60

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           + Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP   
Sbjct: 61  ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120

Query: 339 YKAVAQLIYKIYHKKI 354
            +A A+++  +  + I
Sbjct: 121 IEATAEVLRWLERQNI 136


>gi|167841195|ref|ZP_02467879.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 250

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 102/248 (41%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+  ++      G    SR+ +   +  A  +     F     +    LH L   
Sbjct: 3   EKTEQPTESRLRRERRAGRISKSRDLTQAVAGAAWPLAFALSFDFVFGAAVRVLHGLFEL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +    D + + F ++ + +    L +          I   L+Q   +L++  V P+F 
Sbjct: 63  IGEGGPPDSARMDFAMSRVIVPTIALSVGVAAAGAAISIALELMQTKGLLSMKPVTPNFG 122

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++    +K I+S+  LV   K+ VK+  VG    + +      +    + +  S L   
Sbjct: 123 KLNPINQLKSIFSLRTLVELAKNLVKVAAVGACTLVVIRVALPDLAVVATVDLPSALNLT 182

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
              + ++    +  +  L V+D+G+  +++   LKM+K E+K + KQ  G+P++K  ++ 
Sbjct: 183 TSLLFRIATASIAVLVALAVIDVGYQRYEYIKGLKMTKDEVKRDYKQQEGDPLVKGERRR 242

Query: 249 IARSRIRH 256
                   
Sbjct: 243 QHAELADR 250


>gi|289805082|ref|ZP_06535711.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 224

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 3/224 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3   EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     ++ +   L     SA   +  G    ++  +GS  +Q   V+    +    +
Sbjct: 63  VNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFKSE 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
            ++     K+I+S++++V   KS +K+I++  I          T            +   
Sbjct: 120 HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE 232
              ++ + + ++ F   + +LD  + Y++    LKMSK ++K E
Sbjct: 180 SSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQE 223


>gi|238759386|ref|ZP_04620551.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236]
 gi|238702413|gb|EEP94965.1| hypothetical protein yaldo0001_4780 [Yersinia aldovae ATCC 35236]
          Length = 240

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 90/206 (43%)

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           MK+F+ +++ G    +        +        + ++          +I+ L     + +
Sbjct: 1   MKAFLYLLVFGASAALFFIFWRQEIFMLYRTTINGMIGQWGHLCITFIIVFLAVALLILL 60

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATII 268
           +D    +  +   LKM KQE+K E K + G+P IK+ ++ + +  +  ++      +T I
Sbjct: 61  IDTLTEFFLFMKDLKMEKQEVKKEHKDNDGDPHIKSARRGLHQELLSEEVKANVRDSTFI 120

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + NPTH A+A+ +       P ++ K + L AK +   A    +P+  +  LAR L++  
Sbjct: 121 MANPTHIAMAIYFNTDIAPLPFIMMKTKGLQAKAVVAYAESQGVPVVRDIPLARQLWRHY 180

Query: 329 PINSAIPPVFYKAVAQLIYKIYHKKI 354
             +S I       V  +I  +   ++
Sbjct: 181 RKDSFIDEQGLDDVMHVINWLIRVEL 206


>gi|211938988|pdb|2V5G|A Chain A, Crystal Structure Of The Mutated N263a Yscu C-Terminal
           Domain
          Length = 144

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 72/136 (52%)

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
             +LK SK EIK E K+  G+P IK++++   +        E   R+++++  PTH A+ 
Sbjct: 1   IKELKXSKDEIKREYKEXEGSPEIKSKRRQFHQEIQSGNXRENVKRSSVVVAAPTHIAIG 60

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           + Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP   
Sbjct: 61  ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120

Query: 339 YKAVAQLIYKIYHKKI 354
            +A A+++  +  + I
Sbjct: 121 IEATAEVLRWLERQNI 136


>gi|222446919|pdb|2JLJ|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Yersinia
           Pestis Yscu N263a P264a Mutant
          Length = 144

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 73/136 (53%)

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALA 278
             +LKMSK EIK E K+  G+P IK++++   +      M E   R+++++   TH A+ 
Sbjct: 1   IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIG 60

Query: 279 LRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
           + Y + E   P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP   
Sbjct: 61  ILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQ 120

Query: 339 YKAVAQLIYKIYHKKI 354
            +A A+++  +  + I
Sbjct: 121 IEATAEVLRWLERQNI 136


>gi|220915853|ref|YP_002491157.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953707|gb|ACL64091.1| type III secretion exporter [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 145/347 (41%), Gaps = 8/347 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
             N+TE P+ +++ +A   G   +SRE +      A L   L   +       ++L  +L
Sbjct: 2   SGNRTEQPTPRRLREARRRGEVAVSRELTGA----AALAGGLAALAASAPGAAAELGAML 57

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            +A        +     L   + +  RL +P     +  G  +  +Q  P L+   + P 
Sbjct: 58  RAALAAAGGAPASPAAALQGAAAAVLRLSLPACGAALAVGAAAAALQAGPGLSFAALAPR 117

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
            +R+    G++R+ S   L        K  ++  +    L     ++       P + L+
Sbjct: 118 LERIDPARGLRRLLSGAQLAAAALGLAKSAVLAALAWGWLAGAAPSLAALPRLGP-AALW 176

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
            A   +  +   +    A L  LD+     +    L M++ E++ E ++  G+P+ +  +
Sbjct: 177 RAPAVLGGLAWRLAAAFAVLGALDLALVRRRHRRALMMTRDEVRREHREDEGDPLHRAAR 236

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           +   R+ +    +   +       NPTH A+AL++ +    AP +VAKG    A ++R  
Sbjct: 237 QRRHRALLEAPAVARATVVV---VNPTHLAVALQHDRRGGGAPRVVAKGAGEAAARIRSA 293

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           A    +P+  + +LAR+L +   +   IP   Y+A A ++  +Y  +
Sbjct: 294 ARRAGVPVVRDVALARALHRLAEVGDEIPEALYEAAAAVLAHLYGLE 340


>gi|296162493|ref|ZP_06845284.1| type III secretion exporter [Burkholderia sp. Ch1-1]
 gi|295887306|gb|EFG67133.1| type III secretion exporter [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 110/245 (44%), Gaps = 3/245 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NK+EAP+ K+I  A  +G    S   ++  S L   +YL F  +P +Y++ ++L + + +
Sbjct: 3   NKSEAPTPKRIRRARRDGEISKSTHLTVAFSGLCWWLYL-FIEAPHLYALGNELILRVTT 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               +  +    +        +    V+  L +  +  +   L+Q   +L    V P  K
Sbjct: 62  LDGSR--EFGDRLASTCAALYAFMSPVLAALGVGALAVLVPELMQTRGLLAWKRVMPDVK 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++   G+K+++S+  + + + + ++  ++  +   +L      +    + +    L +A
Sbjct: 120 RLNPVNGLKQMFSLRLVWDTVLTIIQFTILLFLFVQALVAWLRQLAPIWTFSLPVHLGYA 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
             +   +L+ + +      V D       W   L+M K EIK E +   G+P +K+R+++
Sbjct: 180 AVSHSHLLLWMTVSQIAPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRA 239

Query: 249 IARSR 253
           + R  
Sbjct: 240 LHREL 244


>gi|185177891|pdb|3BZR|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
           Mutation, Space Group P 41 21 2
 gi|185177892|pdb|3BZS|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
           Mutation, Space Group P 21 21 21
          Length = 137

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 70/123 (56%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+ +PTH A+ L Y  
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKL 66

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VA
Sbjct: 67  GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126

Query: 344 QLI 346
           QLI
Sbjct: 127 QLI 129


>gi|330874619|gb|EGH08768.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 234

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 99/235 (42%), Gaps = 3/235 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      ++      L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  N++N + S +K + +G  + + +      ++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNILNLLLSILKAVAIGATLYMQVKPALGALILLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIK 243
               R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K
Sbjct: 180 VELFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVK 234


>gi|218507112|ref|ZP_03504990.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5]
          Length = 218

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 95/167 (56%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP++KK  DA  +GN P SRE S+F+++LA  IYL+FF    +  ++  L 
Sbjct: 17  DDDKDSKTEAPTAKKQTDAAEKGNVPFSRELSIFATVLATFIYLVFFLPENVGRMSETLR 76

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 77  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 136

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
           +P   R+S  +G  R++S+  L+ F KS   +++VG I+   L  N 
Sbjct: 137 RPQASRISPMKGWSRLFSLPGLIEFGKSLFNVVVVGVILFFVLRANI 183


>gi|185177890|pdb|3BZP|A Chain A, Crystal Structural Of The Mutated N262a Escu C-Terminal
           Domain
          Length = 137

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 69/123 (56%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+  PTH A+ L Y  
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKAPTHIAICLYYKL 66

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VA
Sbjct: 67  GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126

Query: 344 QLI 346
           QLI
Sbjct: 127 QLI 129


>gi|110632475|ref|YP_672683.1| type III secretion exporter [Mesorhizobium sp. BNC1]
 gi|110283459|gb|ABG61518.1| type III secretion exporter [Chelativorans sp. BNC1]
          Length = 339

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 122/330 (36%), Gaps = 8/330 (2%)

Query: 7   PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLL 66
              KTEAP+ +++E+   EG  P  +     + +   ++ L++ F P   ++ +    + 
Sbjct: 2   SGEKTEAPTPRRLEERRREGQVPQRKNIIEAALLTFVVVLLIWLFRPLSEALLNLSAAVF 61

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +S +     D+          ++     ++       +F +    +    +     + P 
Sbjct: 62  SSISH----DLEAATATSLVAAMPVVHWMLAICGASALFTLLLSCVLNKFMFAPKALAPK 117

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
           F+R +    IK I+S   L +FM+  V    V  I       N    L         +  
Sbjct: 118 FERFNPVGQIKSIFSKATLYSFMRMIVLFTAVSAIFIYLYVANMDNSLQASHCGEACLYD 177

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQ 246
                +  ++  +L  +  L ++D       + S+ KM+K+E+K E K   G+  IK  +
Sbjct: 178 LFTSRIGMLVAAVLGVLIVLALIDYKIQDRMFISQNKMTKEEVKREYKDQEGDREIKAGR 237

Query: 247 KSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKI 306
           KSIA +     ++  ++     + +      A+ +       P LV K        + + 
Sbjct: 238 KSIALNDAAAPLLSESTH----VVHSDQVLAAVIFYPGAGYPPYLVFKAMGASVPGLCRK 293

Query: 307 AYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
               NIP F  P  A   ++       +P 
Sbjct: 294 FLAMNIPTFNVPGAALEFYRMSAPGQYLPA 323


>gi|91782705|ref|YP_557911.1| putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like [Burkholderia xenovorans LB400]
 gi|91686659|gb|ABE29859.1| Putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like protein [Burkholderia xenovorans
           LB400]
          Length = 246

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 106/245 (43%), Gaps = 3/245 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +K+EAP+ ++I  A  +G    S   ++  S L   +YL F  +P +Y++ S L + + +
Sbjct: 3   DKSEAPTPRRIRRARADGEIAKSVHLTVAFSGLVWWLYL-FIEAPHLYALGSQLILHVTT 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
               +  D    +        +    V+  L + ++  +   L+Q   VL    V P  K
Sbjct: 62  LDASR--DFGDQLASTCAALYAFMAPVLTALGVGVLAVLVPELMQTRGVLAWKRVAPDVK 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++   G+K+++S+  L + + + ++  ++  + T ++      +      +    L + 
Sbjct: 120 RLNPINGLKQMFSLRLLWDSVLTIIQFTILLFLFTQAVVAWLRQLAPAWEFSLPVHLGYT 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
                 +L  +        V D       W   L+M K EIK E +   G+P +K+R+++
Sbjct: 180 AIAHSHLLAWMAASQIVPGVADYLVQRFLWLRGLRMDKNEIKREFRDDEGDPYVKSRRRA 239

Query: 249 IARSR 253
           + R  
Sbjct: 240 LHREL 244


>gi|330879005|gb|EGH13154.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 279

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 113/246 (45%), Gaps = 1/246 (0%)

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSYLI-QRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
           LL H       + +P + + +   I + ++  R  V ++  ++P  KR++  EG KRI++
Sbjct: 31  LLDHAEQIVIGITVPVVAVTVGAVILTNIVTMRGVVFSIEPIQPDIKRINPTEGFKRIFA 90

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
           + NL+ F+K  VK++L+     +   +    +++        I    +  ++ ++  +L 
Sbjct: 91  MRNLIEFLKGLVKVVLLALAFYVVGRQALQALMESSRCGEGCIESTFYLVLKPLVFTVLA 150

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
               +  +D+      +  ++KMS  E K E K   G+P+IK  ++   R          
Sbjct: 151 AFLLVGAVDVLMQRWLFGREMKMSHSEQKRERKDIDGDPMIKRERQRQRREMQALATKLG 210

Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
             RA+++I +   + + +RY++ E   P++V +  +  +  +   A    I  + + SLA
Sbjct: 211 LGRASLVIGDSGGWVVGVRYVRGETPVPIVVCRASSQDSSTLLAEALSLGIARWPDASLA 270

Query: 322 RSLFKQ 327
             + ++
Sbjct: 271 EMIARR 276


>gi|307944387|ref|ZP_07659728.1| putative secretion system apparatus protein SsaU [Roseibium sp.
           TrichSKD4]
 gi|307772733|gb|EFO31953.1| putative secretion system apparatus protein SsaU [Roseibium sp.
           TrichSKD4]
          Length = 259

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 9/265 (3%)

Query: 89  LSASRLVIPGLLLFMMFGIGSYLIQR-IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
           +S   +V+P ++L + F + + ++     V +   +KP F +++   G+K I+ +  L  
Sbjct: 1   MSDGYIVLPIMMLVIFFSVLASIMMTQGFVFSTERMKPDFNKLNPANGLKNIFGLQALKT 60

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
            +   +++   GTI+   +     T+           +         VL+ +L+      
Sbjct: 61  ALMHVLRLSFSGTILIFLIYYFVPTVFLSPYCELDCGISVNATVYFYVLLALLILSIIFA 120

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATI 267
           ++D      ++  + KM+  E K E K+  GNP IK R K I +  +   +      A+ 
Sbjct: 121 MIDFVVQRSEFLRQNKMTDTEQKQEKKEQLGNPEIKGRIKEIQQEVVTKTV--GMRNASF 178

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           I+ +    A+A+RY+    + P +VAK +   A  + ++A E   P+     L  +L K+
Sbjct: 179 IVADGLKQAVAIRYVPGGEEMPTIVAKARGRNA--VLRLASESGKPVEHSAEL-LALVKK 235

Query: 328 VPINSAIPPVFYKAVAQLIYKIYHK 352
           + +   I     +A  + +    HK
Sbjct: 236 IGVGDPI---MDEAAVKHLVPFLHK 257


>gi|185177893|pdb|3BZT|A Chain A, Crystal Structural Of The Mutated P263a Escu C-Terminal
           Domain
 gi|313507295|pdb|3C03|A Chain A, Crystal Structure Of The Escu C-Terminal Domain With P263a
           Mutation,Space Group P 1 21 1
          Length = 137

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 69/123 (56%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+ N TH A+ L Y  
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKNATHIAICLYYKL 66

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +     I   F++ VA
Sbjct: 67  GETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVA 126

Query: 344 QLI 346
           QLI
Sbjct: 127 QLI 129


>gi|148645118|gb|ABR01083.1| FlhB [uncultured Geobacter sp.]
 gi|148645120|gb|ABR01084.1| FlhB [uncultured Geobacter sp.]
          Length = 114

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 70/113 (61%)

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE K   G+P +K++ K +   +   ++ +    A +IITNPTH+A+AL+Y +   
Sbjct: 1   QEVKDEHKDMEGDPQVKSKIKGLQFQKAFQRLQKIIPTADVIITNPTHFAVALKYDRDRM 60

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFY 339
            APV++AKG + +A++++ +A E+NI + E   LAR L+ QV     IP   Y
Sbjct: 61  AAPVVIAKGADFMAQRIKALARENNITLVENRFLARELYAQVKEGEEIPEALY 113


>gi|218678319|ref|ZP_03526216.1| flagellar biosynthesis protein FlhB [Rhizobium etli CIAT 894]
          Length = 169

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 100/169 (59%)

Query: 12  EAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           EAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF   G+  +T  L  +     Q
Sbjct: 1   EAPTAKKQSDAAEKGNLPSSRELSIFATILATYIYLVFFLPEGVGRMTETLRDIFEQPDQ 60

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVS 131
            K+E    I+ L   L  +++ LV P L++FM+FGI S + Q +P   L  ++P   R+S
Sbjct: 61  WKIETGPDILSLFVRLGWASAALVAPALIMFMVFGIASSVFQNLPTPVLERIRPQASRIS 120

Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
             +G  R++S+  L+ F KS  K+++VG I+   L   YF+ +D + ++
Sbjct: 121 PAKGWGRLFSLPGLIEFGKSLFKVVVVGVILFFVLRSEYFSSIDAMFSD 169


>gi|222446918|pdb|2JLI|A Chain A, Atomic Resolution Structure Of The Cytoplasmic Domain Of
           Yersinia Pestis Yscu, A Regulatory Switch Involved In
           Type Iii Secretion
          Length = 123

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 67/122 (54%)

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           EIK E K+  G+P IK++++   +      M E   R+++++ NPTH A+ + Y + E  
Sbjct: 1   EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP 60

Query: 288 APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIY 347
            P++  K  +   + +RKIA E  +PI +   LAR+L+    ++  IP    +A A+++ 
Sbjct: 61  LPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLR 120

Query: 348 KI 349
            +
Sbjct: 121 WL 122


>gi|313639087|gb|EFS04065.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL S4-171]
          Length = 134

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 77/123 (62%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MSKQEIKDE+K S G P +K RQ+SIAR  ++  + +  + AT ++ NPTH ++ +RY +
Sbjct: 1   MSKQEIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDK 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
            ++ AP L+AKG++ +A  +R++A    +P+     LARS++     +  I    YK V 
Sbjct: 61  AKDHAPKLLAKGEDELALFIRQVAETDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI 120

Query: 344 QLI 346
           +++
Sbjct: 121 EVM 123


>gi|254460321|ref|ZP_05073737.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium
           HTCC2083]
 gi|206676910|gb|EDZ41397.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 137

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 78/130 (60%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQ 283
           MS +E++DE K+S G P +K  +++ A+    ++MM     A ++I NPTHYA+AL++  
Sbjct: 1   MSHKELQDESKESEGAPHLKQARRARAQEVAMNQMMGEFPTADVVIVNPTHYAIALKWEG 60

Query: 284 TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVA 343
           + + AP+ VAKG + IA ++++ A +  + I  +P  AR+++  V I   I P +Y+AVA
Sbjct: 61  SRSAAPICVAKGVDDIAMRIKEAAKDAKVAIHSDPPTARAIYAVVEIGQEINPEYYEAVA 120

Query: 344 QLIYKIYHKK 353
             I      K
Sbjct: 121 VAIRFAEALK 130


>gi|213423874|ref|ZP_03356854.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 228

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 81/186 (43%)

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
           +  + + +K+ + +        I   +    +   ++ N   I       +  +++  L 
Sbjct: 1   MRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAVIWRELLLALVLTCLA 60

Query: 202 FIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
               + +LD    Y      +KM K+E+K E+K+  GNP +K++++ +    +  ++   
Sbjct: 61  CALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSD 120

Query: 262 TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA 321
              + +I+ NPTH  + + +       P++     N  A  +R  A +  +P+  +  LA
Sbjct: 121 IENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLA 180

Query: 322 RSLFKQ 327
           RSLFK 
Sbjct: 181 RSLFKT 186


>gi|323180302|gb|EFZ65854.1| surface presentation of antigens protein spaS [Escherichia coli
           1180]
          Length = 210

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 8/212 (3%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           +L   +YL + F   ++ + S L  +L    +  + D          + +   +  IP L
Sbjct: 1   MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGVGWLKTNIPFL 52

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
           L+ M   I     Q    L    VK  F  ++   G+KRI+ +  +  F+K+ + I+   
Sbjct: 53  LVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIVFFA 112

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
             I +  + +   +   +  +  S+L      +  +++  L  +  + + D    Y  + 
Sbjct: 113 LAIKVFWSNHKSLLFKTLDGDIISLLSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFM 172

Query: 220 SKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
             +KM KQE+K E K+  GNP IK++++   R
Sbjct: 173 KDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 204


>gi|187919907|ref|YP_001888938.1| putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like protein [Burkholderia phytofirmans
           PsJN]
 gi|187718345|gb|ACD19568.1| putative type III secretion transmembrane protein,
           EscU/SctU/YscU-like protein [Burkholderia phytofirmans
           PsJN]
          Length = 246

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 108/247 (43%), Gaps = 3/247 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           +KTEAP+  ++  A  +G+   S   S+  S L  L++LL   +P +Y V   +  +   
Sbjct: 3   DKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFLLMD-APHVYQVCVHVVEVATQ 61

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             Q +   + ++   +T    +A  +++  L +  +  +   + Q   V  +    P FK
Sbjct: 62  IDQGQPFAVRYL--QITRAFGAAMPILLATLGVGALAVVVPEVAQAGGVFAVKRALPDFK 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           R++   G+K ++ +  L++     ++  ++  ++  +       +L   +      L   
Sbjct: 120 RLNPVTGLKNLFGLKTLIDTGIVLMQFCILVFVLWHAFATWCAQLLPAFALAFGGQLSVT 179

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKS 248
             ++ ++  ++         +D      QW  +L+M K EIK E +   G+P +K R+++
Sbjct: 180 AQSLAQLQGLMAASQLAPAAIDFWLQRLQWRRRLRMDKNEIKREHRDEDGDPHVKGRRRA 239

Query: 249 IARSRIR 255
           + R   R
Sbjct: 240 LHRELSR 246


>gi|323152630|gb|EFZ38906.1| flagellar biosynthetic flhB domain protein [Escherichia coli
           EPECa14]
          Length = 169

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  + S ++    V + 
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSG 117

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
             ++P F +++   GIKR++S       +K+ +K ILVG++    
Sbjct: 118 KSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFF 162


>gi|254460203|ref|ZP_05073619.1| flagellar biosynthetic protein FlhB [Rhodobacterales bacterium
           HTCC2083]
 gi|206676792|gb|EDZ41279.1| flagellar biosynthetic protein FlhB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 217

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 1/218 (0%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D   +K+  P+ KK++D   +G    S E ++  S     + L       + S  +
Sbjct: 1   MAEEDDVADKSHDPTQKKLDDVRKKGEVAKSNEVNVALSYFGIWVLLAVLGGVSVSSFGT 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L +A  R+   +     L   L L A + V    ++     + + L +R  +   
Sbjct: 61  TLQSGLLNAFSRE-PSLHFSPGLFAPLLLGAGQFVGLMAIMPAALIVLALLARRTFLFTS 119

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
           + +KP   R+S+ +  K  +    L  F KSFVK+++    + + L  N+ T++   +A+
Sbjct: 120 SKLKPKASRISILKNAKNKFGRGGLFEFAKSFVKLLVFSLCLGLFLNANFDTIVVTSAAS 179

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
               +   F  +   L + +L  A + ++D GW   + 
Sbjct: 180 ERGAISVLFDLMTSFLSLAVLIAAVIAIIDYGWQVSEH 217


>gi|270487693|ref|ZP_06204767.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270336197|gb|EFA46974.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 216

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 3/218 (1%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +++   K+E P++ K+  A  +G+ P S++ ++ + ++   I L  F  P   ++ S   
Sbjct: 2   SNSSGEKSEKPTAGKLSKARKKGDIPRSKDVTMAAGLVTSFILLSLFL-PYYKALVSQSF 60

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           V +A    +  +  +   FLL +L + A  L    L+   +F + + LI          +
Sbjct: 61  VSVAQLASQLDDQGALEQFLLANLFIFAKFL--ATLIPIPLFSMLATLIPGGWNFTPVKL 118

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
            P  K++S   GIKRI+S +N    +K   K  +V   + + +  +   +L   +     
Sbjct: 119 IPDLKKLSPLAGIKRIFSASNGTEVLKMLAKCSIVLYTLYLVVHSSLDDLLHLQTLPLEE 178

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSK 221
            +   F     +L+  +  +     +DI  S+H +  K
Sbjct: 179 AITQGFAQYHHILLYFIAIVVVFAAIDIPLSHHLFTKK 216


>gi|330893300|gb|EGH25961.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 140

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 229 IKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTE 285
           IK E KQS G+P +K  ++ ++   +  +   A      A +++ NPTHYA+AL Y   E
Sbjct: 1   IKKEYKQSEGDPHVKGHRRQLSHEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGE 60

Query: 286 NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL 345
              P++  KG++  A  +   A +  IP+ +   L R+L++   +   IP    +AV  +
Sbjct: 61  TPLPLIHCKGEDEEALALIARAKKAGIPVVQSIWLTRTLYR-AKVGKYIPRPTLQAVGHI 119

Query: 346 IYKIYHK 352
              +   
Sbjct: 120 YKVVRQL 126


>gi|330883669|gb|EGH17818.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 138

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
             R +L +IL  +  + ++D     +    KL+MS ++IK E KQS G+P +K  ++ ++
Sbjct: 1   LFRHILRVILGLLLVVAMVDFAMQKYFHAKKLRMSHEDIKKEYKQSEGDPHVKGHRRQLS 60

Query: 251 RSRIRHKMMEA---TSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIA 307
              +  +   A      A +++ NPTHYA+AL Y   E   P++  KG++  A  +   A
Sbjct: 61  HEILNQEPSAAPNPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARA 120

Query: 308 YEHNI 312
            +  I
Sbjct: 121 KKAGI 125


>gi|224170147|ref|XP_002339344.1| predicted protein [Populus trichocarpa]
 gi|222874949|gb|EEF12080.1| predicted protein [Populus trichocarpa]
          Length = 113

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/100 (44%), Positives = 67/100 (67%)

Query: 253 RIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNI 312
             R +MM     AT+++TNPTH+A+A+RY      APV+VAKGQ+ +A  +RKIA E  +
Sbjct: 1   MARRRMMAKVKTATVVVTNPTHFAVAIRYEPMTMAAPVVVAKGQDEVALNIRKIAREARV 60

Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           P+ E P LAR+L+   P++  IP  FY+AVA+++  +Y +
Sbjct: 61  PVMENPPLARTLYAACPLDREIPVEFYQAVAEILSLLYER 100


>gi|213024578|ref|ZP_03339025.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 183

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 61/127 (48%)

Query: 201 LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMME 260
                + +LD    Y      +KM K+E+K E+K+  GNP +K++++ +    +  ++  
Sbjct: 15  ACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKS 74

Query: 261 ATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSL 320
               + +I+ NPTH  + + +       P++     N  A  +R  A +  +P+  +  L
Sbjct: 75  DIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKL 134

Query: 321 ARSLFKQ 327
           ARSLFK 
Sbjct: 135 ARSLFKT 141


>gi|315301909|ref|ZP_07872922.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596]
 gi|313629725|gb|EFR97845.1| flagellar biosynthesis protein FlhB [Listeria ivanovii FSL F6-596]
          Length = 182

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2   AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQGFVAL 61

Query: 66  LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
           L         +++ I        +   ++++P +++ ++FG+ +Y +Q   + +   VKP
Sbjct: 62  LKQP-----PNLASIESYSLFYIMEFGKVLLPVMIMVVIFGLMNYGVQVGILFSAKAVKP 116

Query: 126 SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSIL 185
            FKR++     KR++S+  +V  +K+ + I L+  +  I   ++  T++ +   N    L
Sbjct: 117 QFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDHLQTLISYTGQNWLYSL 176

Query: 186 YHAFFT 191
              F  
Sbjct: 177 KQIFSL 182


>gi|149912839|ref|ZP_01901373.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b]
 gi|149813245|gb|EDM73071.1| flagellar biosynthetic protein FlhB [Roseobacter sp. AzwK-3b]
          Length = 119

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 58/107 (54%)

Query: 242 IKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAK 301
           +K  ++  A      + +     A ++I NPTHYA+AL + +  N APV VAKG + +A 
Sbjct: 1   MKQERRQRASRLASDQTIADVPNADVVIVNPTHYAVALTWSRAPNSAPVCVAKGVDYMAL 60

Query: 302 KMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
            +R++A +H +P+  +P  AR++     I   I P  Y+AVA  I  
Sbjct: 61  AIREMAEDHGVPVRSDPPTARAIHATTEIGMEIDPGQYQAVAAAIRF 107


>gi|154175076|ref|YP_001408824.1| putative flagellar assembly protein [Campylobacter curvus 525.92]
 gi|112803684|gb|EAU01028.1| putative flagellar assembly protein [Campylobacter curvus 525.92]
          Length = 215

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++D    KTE  +SKKIEDA  +GN P S++ + F++++  ++ LL      +     
Sbjct: 1   MADDD--QEKTEEATSKKIEDAKKDGNVPKSQDIAGFATLVIAILVLLAML-NFMREQVV 57

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L++  +     ++   S +  ++ +    +  +++P  +   + GI + ++Q   +   
Sbjct: 58  ALYIYYSKFIGVEI-TPSALNLIVINTLARSLLMILPICICVAIAGIVANVMQFGFIFTT 116

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTE 168
             + P   +++  +G+K ++S+   ++ +K   K+  V  +      +
Sbjct: 117 KPITPDINKINPLKGLKNLFSMKKAIDSVKIVAKVSAVFGVAFYFFLQ 164


>gi|46204446|ref|ZP_00049997.2| COG1377: Flagellar biosynthesis pathway, component FlhB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 97

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/93 (49%), Positives = 68/93 (73%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M+    RAT++I NPTH+A+ALRY  TEN AP+++AKGQ+LIA ++R IA E  I + E+
Sbjct: 1   MLANVDRATVVIANPTHFAVALRYEPTENPAPLVLAKGQDLIALRIRAIAEEKGIAVIED 60

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
             LARSL+  V ++  IP  FY+AVAQ+++ ++
Sbjct: 61  KPLARSLYDAVQVDQTIPAEFYRAVAQILFFLF 93


>gi|226326420|ref|ZP_03801938.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198]
 gi|225205203|gb|EEG87557.1| hypothetical protein PROPEN_00268 [Proteus penneri ATCC 35198]
          Length = 145

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 60/133 (45%)

Query: 222 LKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRY 281
           + M K E+K E K   G+P IK+ +K + +  +   M +    ++ +I NPTH A+ + +
Sbjct: 1   MMMEKHEVKQENKNMEGDPEIKSTRKQLHQELLDEPMKKVIRDSSAVIVNPTHVAVGIYF 60

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKA 341
                  P++  K  N  A  ++  A E   P+   P LAR ++ +  +   +       
Sbjct: 61  DPDNGIMPLVSLKCVNAKALAVKSYAKEVGTPVVRYPELARKIYHRYHLFEVMMDQDLLD 120

Query: 342 VAQLIYKIYHKKI 354
           +  ++  +   +I
Sbjct: 121 IMDILIWLKKIEI 133


>gi|315256731|gb|EFU36699.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 85-1]
          Length = 192

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
            ++   G+KRI+ +  +  F+K+ + IIL       
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFFFCHW 150


>gi|300906602|ref|ZP_07124293.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 84-1]
 gi|300401641|gb|EFJ85179.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 84-1]
          Length = 192

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
            ++   G+KRI+ +  +  F+K+ + IIL    +  
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFFFLHW 150


>gi|261884065|ref|ZP_06008104.1| flagellar biosynthesis protein FlhB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 99

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/92 (56%), Positives = 71/92 (77%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M+ A   AT+I+ NPTH+++ALRY   E+ APV+VAKGQ+LIA K+R+IA  H+IP+FE+
Sbjct: 1   MINAVPTATLIVANPTHFSVALRYKPNEDAAPVVVAKGQDLIALKIREIAASHSIPVFED 60

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
             LAR+L+KQV ++  I P FYKAVA+LI  I
Sbjct: 61  VQLARALYKQVNVDQMIAPEFYKAVAELIRII 92


>gi|71388156|gb|AAZ31290.1| EpaS1 [Escherichia coli]
          Length = 155

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
            ++   G+KRI+ +  +  F+K+ + IIL    I 
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFFCIG 149


>gi|323183412|gb|EFZ68809.1| surface presentation of antigens protein spaS [Escherichia coli
           1357]
          Length = 190

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160
            ++   G+KRI+ +  +  F+K+ + IIL   
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIILFFL 146


>gi|309793919|ref|ZP_07688344.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 145-7]
 gi|308122326|gb|EFO59588.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 145-7]
          Length = 188

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 11/179 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPNIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSI 184
            ++   G+KRI+ +  +  F+K+ + I+ +        + +   +  +L  IS   + I
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFLHWRSKYFGVIINHCFLKLLMEISYLYYQI 173


>gi|300820658|ref|ZP_07100809.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 119-7]
 gi|300526922|gb|EFK47991.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 119-7]
          Length = 188

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 11/179 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSI 184
            ++   G+KRI+ +  +  F+K+ + I+ +        + +   +  +L  IS   + I
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVKAILYIVFLHWRSKYFGVIINHCFLKLLMEISYLYYQI 173


>gi|229195982|ref|ZP_04322734.1| Flagellar biosynthetic protein [Bacillus cereus m1293]
 gi|228587364|gb|EEK45430.1| Flagellar biosynthetic protein [Bacillus cereus m1293]
          Length = 108

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 60/102 (58%)

Query: 250 ARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYE 309
             + ++  + +    AT I+ NPTH ++ LRY +  + AP++VAKG++ +A  +R +A E
Sbjct: 1   MHAILQGTIAKKMDGATFIVNNPTHISVVLRYNKHVDAAPIVVAKGEDELALYIRTLARE 60

Query: 310 HNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
             IP+ E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 61  QEIPMVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 102


>gi|213620930|ref|ZP_03373713.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 123

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 52/75 (69%)

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
           + +MME   +A +I+TNPTHY++AL+Y + +  AP +VAKG  LIA ++R+I  EH +P 
Sbjct: 1   QRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPT 60

Query: 315 FEEPSLARSLFKQVP 329
            E P LAR+L++   
Sbjct: 61  LEAPPLARALYRHAE 75


>gi|301026126|ref|ZP_07189600.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 196-1]
 gi|299879821|gb|EFI88032.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 196-1]
          Length = 188

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 11/179 (6%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +L  
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYILDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   +  IP LL+ M   I     Q    L    VK    
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTNIPFLLVCMFTTILVSWFQSKKQLATEAVKFKLD 114

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILV---GTIITISLTENYFTMLDFISANPHSI 184
            ++   G+KRI+ +  +   +K+ + II +        + +   +  +L  IS   + I
Sbjct: 115 SLNPVNGLKRIFGLKTVKESVKAILYIIFLHWRSKYFGVIINHCFLKLLMEISYLYYQI 173


>gi|217032175|ref|ZP_03437674.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128]
 gi|216946165|gb|EEC24774.1| hypothetical protein HPB128_186g41 [Helicobacter pylori B128]
          Length = 164

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFIFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ M+      ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILMVVAFLFNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITIS 165
             ++P F +++   G+K ++S+  L++     +K+ LV      S
Sbjct: 115 KVIEPKFSKINPINGVKNLFSLKKLLDGSLITLKVFLVFFSWGFS 159


>gi|254691438|ref|ZP_05154692.1| flagellar biosynthesis protein FlhB [Brucella abortus bv. 6 str.
           870]
          Length = 146

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 70/146 (47%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+++   ++KTE  + +KI DAL++GN P SREA + + I + L+  +F  +P    +  
Sbjct: 1   MADDADKESKTEEATEQKIRDALDKGNMPFSREAPILAGIASFLVIAVFVAAPAATRLAV 60

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+       L        L + L+L+    ++P  ++  + GI +   Q  P    
Sbjct: 61  FLRELIDRPEDWLLNSAEDATRLFSVLALAVGAALVPVFIIIPLAGIAASAFQNAPRFVG 120

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLV 146
             ++P   R+S  +G +RI+     V
Sbjct: 121 ERIRPQASRISPLKGWQRIFGRAGQV 146


>gi|1196944|gb|AAD15121.1| putative [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 154

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 68/147 (46%)

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
               R + D + I+  +  L  +A   ++P +   ++  + S ++    + +   ++P F
Sbjct: 7   HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKF 66

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +++   GIKR++S       +K+ +K  LVG +    L  ++  M+  ++ +P   + +
Sbjct: 67  SKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHHWPQMMRLMAESPIVAMGN 126

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWS 214
           A   V    ++++L +  +   D+ + 
Sbjct: 127 ALDLVGLCALLVVLGVIPMVGFDVFFQ 153


>gi|213029691|ref|ZP_03344138.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 107

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query: 256 HKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
             + ++  ++  ++ NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ 
Sbjct: 2   GSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVV 61

Query: 316 EEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           E   LARSLF +V     IP   ++ VA L+  +  
Sbjct: 62  ENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK 97


>gi|74317194|ref|YP_314934.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056689|gb|AAZ97129.1| flagellar biosynthetic protein FlhB [Thiobacillus denitrificans
           ATCC 25259]
          Length = 261

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 108/257 (42%), Gaps = 11/257 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E +   ++TE  S+++++DA   G+ P S E + +  +LA +  L +        +  
Sbjct: 1   MAEEND-LSRTEPASARRLQDARAAGDVPRSSEFAAWLVLLAAIGVLSWQGP----RLLG 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L  L+A+A Q   +  S  V        SA   V+P L    +  + + L+    V   
Sbjct: 56  SLQTLVATALQHAAKPFSPAV---VEAVGSALWAVLPVLGAVFVAALIAPLLLSRWVYAP 112

Query: 121 NHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISAN 180
               P   R      + R++S++++ +   + +K+ L    +  +   +   +    +  
Sbjct: 113 -GSHPR--RRHPFHAVARLFSLDSVADLALTLLKVALAALAVWWAFGASTPGIAALDAIA 169

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNP 240
             +    A   +   ++ ++  +A +  LD GW + ++  +  M+ QE+  E +++  +P
Sbjct: 170 ADAAPEAAAGWLGHGVLALVAGLALVAALDAGWQWLRYLRRHAMTWQEVLAEAREAEVHP 229

Query: 241 IIKNRQKSIARSRIRHK 257
            I+ + +   +      
Sbjct: 230 EIRAQLRGRQQQAGARP 246


>gi|302390418|ref|YP_003826239.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302201046|gb|ADL08616.1| FlhB domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 96

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL+Y   ++ AP +VA G+   A+++ + A EH IP+  +P LA +L   V + 
Sbjct: 8   PQRKAVALKYDPEKDGAPRVVASGRGETAERIIQTAKEHGIPLHTDPELAGALL-SVEVG 66

Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
             IPP  Y+AVA+++  IY  
Sbjct: 67  LEIPPELYRAVAEILAFIYRL 87


>gi|301303006|ref|ZP_07209133.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 124-1]
 gi|300841670|gb|EFK69430.1| surface presentation of antigens protein SpaS domain protein
           [Escherichia coli MS 124-1]
          Length = 155

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           NKTE P+ KK++DA  +G    SR+ ++   +L   +YL + F   ++ + S L  +   
Sbjct: 3   NKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFD--VHHIMSILEYIFDH 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +  + D          + +   + +IP LL+ M   I     Q    L    VK  F 
Sbjct: 61  NAKPDIWD------YFKAMGVGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKFKFD 114

Query: 129 RVSLREGIKRIYSINNLVNFMK 150
            ++   G+KRI+ +  +  F+K
Sbjct: 115 SLNPVNGLKRIFGLKTVKEFVK 136


>gi|330975861|gb|EGH75927.1| type III secretion protein HrcU [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 195

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 78/196 (39%), Gaps = 3/196 (1%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGFTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           +++     K+++S  NL+N + S +K I +G  + + +     T++   +++  +  +  
Sbjct: 120 KINPFSHAKQMFSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDLTTYWHAL 179

Query: 189 FFTVRKVLIMILLFIA 204
               R +L +IL  + 
Sbjct: 180 VELFRHILRVILGLLL 195


>gi|218515300|ref|ZP_03512140.1| flagellar biosynthesis protein FlhB [Rhizobium etli 8C-3]
          Length = 151

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 70/121 (57%)

Query: 4   NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLH 63
           +D  D+KTEAP+++K  DA  +GN P SRE S+F++ILA  IYL+FF    +  ++  L 
Sbjct: 31  DDDKDSKTEAPTARKQTDAAEKGNVPFSRELSIFATILATFIYLVFFLPENVGRMSETLR 90

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            +     Q K+E    I+ L   L  +++ L+ P  +L M+FGI S + Q +P   L  +
Sbjct: 91  DIFEQPDQWKIETGPDILALFVRLGWASAALLAPAFILLMVFGIASSIFQNLPTPVLERI 150

Query: 124 K 124
           +
Sbjct: 151 R 151


>gi|108762856|ref|YP_630671.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
 gi|108466736|gb|ABF91921.1| FlhB/HrpN/YscU/SpaS family protein [Myxococcus xanthus DK 1622]
          Length = 94

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +++    A+AL+Y + ++ AP +VAKG  L A+K+R+IA EHNIP+    +LA +L++ V
Sbjct: 1   MSDDAEIAIALKYDKEKDGAPRVVAKGMRLKAEKIREIAREHNIPLMRNVNLANALYR-V 59

Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
            +   +P   Y AVA+++  +Y  +
Sbjct: 60  EVGQEVPEELYDAVAEVLNFVYELQ 84


>gi|317051555|ref|YP_004112671.1| type III secretion exporter [Desulfurispirillum indicum S5]
 gi|316946639|gb|ADU66115.1| type III secretion exporter [Desulfurispirillum indicum S5]
          Length = 128

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y Q ++ AP++ AKGQ  +A+ +   A EH + I E+P L  +L   + I+  IP
Sbjct: 47  AVALKY-QDKSRAPLVSAKGQGHVAEAIIDKAREHGVAIHEDPDLVVAL-SALEIDQEIP 104

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA+++  +Y +
Sbjct: 105 EELYQAVAEVLAFLYKQ 121


>gi|289811230|ref|ZP_06541859.1| secretion system apparatus protein SsaU [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 93

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + NPTH A+ L Y  T+   P ++ KG +  A  +  IA  + IP+ E   LARSLF +V
Sbjct: 1   MRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEV 60

Query: 329 PINSAIPPVFYKAVAQLIYKIYH 351
                IP   ++ VA L+  +  
Sbjct: 61  ERGDKIPETLFEPVAALLRMVMK 83


>gi|167463786|ref|ZP_02328875.1| FlhB domain protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382570|ref|ZP_08056450.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153486|gb|EFX45891.1| flagellar biosynthesis-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 110

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +  APV++AKG   IA+ +   A EH IP+ E+PSL   L  ++ ++  IP
Sbjct: 20  AVALKYNPGQGQAPVVIAKGTGKIAEDILSKAEEHGIPVQEDPSLVEVL-SKLDLDQEIP 78

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ VA+++  IY 
Sbjct: 79  PELYQLVAEILTFIYR 94


>gi|115377833|ref|ZP_01465021.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820311|ref|YP_003952669.1| type III secretion exporter family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365165|gb|EAU64212.1| flagellar biosynthesis protein FlhB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393383|gb|ADO70842.1| Type III secretion exporter family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 93

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           + +    A+AL+Y Q ++ AP +VAKG  L A+K+R+IA ++NIP+ +   LA +L++ V
Sbjct: 1   MNDEAEIAIALKYDQNKDSAPRVVAKGMRLKAEKIREIAKQYNIPVMKNLPLASALYR-V 59

Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
            +   +P   Y AVA+++  +Y  +
Sbjct: 60  DVGQEVPEELYDAVAEVLNFVYALQ 84


>gi|148645122|gb|ABR01085.1| FlhB [uncultured Geobacter sp.]
          Length = 89

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 58/89 (65%)

Query: 227 QEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEN 286
           QE+KDE K S G+P +K +QK       R +M +    A +++TNPTHYA+AL+Y + + 
Sbjct: 1   QEVKDEHKNSEGDPAVKGKQKQKQFQMARRRMRQIIPTADVVVTNPTHYAVALKYDRFKM 60

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIF 315
            APV++ KG + +A +++ +A E+N+ + 
Sbjct: 61  AAPVVLFKGVDQMALQIKIVARENNVMLV 89


>gi|297617102|ref|YP_003702261.1| type III secretion exporter [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144939|gb|ADI01696.1| type III secretion exporter [Syntrophothermus lipocalidus DSM
           12680]
          Length = 92

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY    ++APV+ AKG+ L+A+K+ ++A E  +PI E+P L   L   + I   IP
Sbjct: 11  AVALRYDPEIHEAPVVTAKGRGLLAEKIIELARESGVPIKEDPQLVEYL-AMLDIYQEIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+ VA+++  +Y  
Sbjct: 70  PELYQVVAEILAFVYRL 86


>gi|167949065|ref|ZP_02536139.1| flagellar biosynthesis protein FlhB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 169

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 70/152 (46%)

Query: 67  ASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
            + +++++ D+S ++  LT    SA  +++P  L+ ++  + S ++     ++  ++ P 
Sbjct: 5   FTISRQEIFDVSSMLVRLTESLQSAFMMLLPYFLVMVVLAVASSVVLGGLAVSSENLMPK 64

Query: 127 FKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILY 186
             ++S  +GIKR++S   L+  +K+  K +L+G +  + L       L     + H    
Sbjct: 65  LSKLSPLKGIKRMFSAKALIEVVKAIAKFVLIGGLTVLLLWNTLENYLQLHEMDLHQGFD 124

Query: 187 HAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
                V   +I++   +  +  +D+ +     
Sbjct: 125 LISSLVGWSVILLASTLILIAAIDVPFQLWDH 156


>gi|213855713|ref|ZP_03383953.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 93

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 293 AKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           AKG  LIA ++R+I  EH +P  E P LAR+L++   I   IP   Y AVA+++  ++  
Sbjct: 1   AKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 60

Query: 353 K 353
           K
Sbjct: 61  K 61


>gi|226313194|ref|YP_002773088.1| hypothetical protein BBR47_36070 [Brevibacillus brevis NBRC 100599]
 gi|226096142|dbj|BAH44584.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 96

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y     +AP +VAKG+  +A  + K A EH+IP+ E+PSL   L  ++ ++  IP
Sbjct: 14  AVALKYQAGTMEAPKVVAKGKGYVADNILKTAKEHDIPVQEDPSLVEVL-GKLDLDQQIP 72

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ VA+++  +Y 
Sbjct: 73  PELYQVVAEILAFVYR 88


>gi|258404776|ref|YP_003197518.1| hypothetical protein Dret_0648 [Desulfohalobium retbaense DSM 5692]
 gi|257797003|gb|ACV67940.1| conserved hypothetical protein [Desulfohalobium retbaense DSM 5692]
          Length = 89

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y ++++DAP +VA GQ  +A+++   A E ++P+ E+P L   L  QVP+   IP
Sbjct: 9   AVALKYERSKDDAPRVVASGQGRLAERILATAEEADVPLREDPDLLEVL-AQVPVGDEIP 67

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA+++  +Y  
Sbjct: 68  EDLYQAVAEILAFVYRL 84


>gi|320102430|ref|YP_004178021.1| hypothetical protein Isop_0882 [Isosphaera pallida ATCC 43644]
 gi|319749712|gb|ADV61472.1| hypothetical protein Isop_0882 [Isosphaera pallida ATCC 43644]
          Length = 310

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 107/303 (35%), Gaps = 19/303 (6%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFF----SPGIY 56
           MSE      +T+AP+ ++  +A   G  P +   +  + + A L+ L  +     S  I 
Sbjct: 1   MSE-----ERTQAPTPRQRAEARRNGLVPFAPNLTAAAGLAAGLVGLAAWGNAAASGWIG 55

Query: 57  SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIP 116
             T     L+ +        I+H    +T L L+     +  +L  ++     ++ Q + 
Sbjct: 56  LATRSWSDLMLNPPSHAPLSINHATTSVTSLVLATVTPTLNIILAPVVAMTLIHVTQTLG 115

Query: 117 VLNLNHVKPSFKRVSLREGIKRIYSI-----NNLVNFMKSFVKIILVGTIITISLTENYF 171
            +    + P  +R+      + +  +       +   ++    +     ++   L     
Sbjct: 116 NITPARLIPDPRRLWRPHHWEEL-GMGTALGRGVGEALRFLGFLGATIGVVGWGLMAVDH 174

Query: 172 TMLDFISANPHSIL----YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQ 227
                 +    + L      A     +  + +   +A L +L+  W +     +L  + +
Sbjct: 175 VSETMTTFPLPNALPSRFAQAVQLTWRWSLSLTAGLAILGLLEFAWRWRDVERRLMRTPE 234

Query: 228 EIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTEND 287
           E +DE + S  NP  + R++ +AR R           A +  T P+    +      +  
Sbjct: 235 ENRDERRSSESNPAWRARRRELARQRGLRLDPRQDRTANLAATPPSLSVPSNLERPADPS 294

Query: 288 APV 290
            P+
Sbjct: 295 LPI 297


>gi|86749459|ref|YP_485955.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris HaA2]
 gi|86572487|gb|ABD07044.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris HaA2]
          Length = 89

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL Y   +  AP +VAKG+  I  K+ ++A EHN+PI E   LA +L   V +   
Sbjct: 8   QIAVALYYD--KGGAPRVVAKGRGTIGAKIIEVAKEHNVPIEENEVLAGAL-SHVELGDE 64

Query: 334 IPPVFYKAVAQLIYKIYHK 352
           IP   YKAVA+++  +   
Sbjct: 65  IPEELYKAVAEVLVFVLKL 83


>gi|313896280|ref|ZP_07829833.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975079|gb|EFR40541.1| putative FlhB domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 107

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
           +    M     A  +       A+A+RY   ++ AP + AKG++ +A ++   A ++ IP
Sbjct: 1   MPENWMPDAPPADDLSEEQEQKAVAVRYDVEKDRAPRVTAKGRSFVADRILAEAKKNGIP 60

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +++  SL   L   + I+  IPP  Y+ +A+++  +Y 
Sbjct: 61  VYQNKSLVNMLMA-LEIDREIPPELYRTIAEVLAHVYR 97


>gi|222055862|ref|YP_002538224.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32]
 gi|221565151|gb|ACM21123.1| flagellar protein FhlB-like protein [Geobacter sp. FRC-32]
          Length = 106

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG  + A+ +  +A E+ + + E P L   L K V  +  IP
Sbjct: 11  AVALAYNPAGDYAPRVVAKGCGVTAEAIIALARENGVYVHESPDLVNLLLK-VDQDRYIP 69

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+AVA+L+  +Y  +
Sbjct: 70  PELYRAVAELLAWLYQLE 87


>gi|330883125|gb|EGH17274.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 116

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 255 RHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPI 314
                +    A +++ NPTHYA+AL Y   E   P++  KG++  A  +   A +  IP+
Sbjct: 6   PSAAPKPVEEADMLLVNPTHYAVALYYRPGETPLPLIHCKGEDEEALALIARAKKAGIPV 65

Query: 315 FEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
            +   L R+L++   +   IP    +AV  +   +   
Sbjct: 66  VQSIWLTRTLYR-AKVGKYIPRPTLQAVGHIYKVVRQL 102


>gi|207109322|ref|ZP_03243484.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 134

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  FF   +   + 
Sbjct: 1   MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFFIWWVDGFSE 56

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
               +L   +         +  L   L+     L++P L++ ++    S ++Q   +   
Sbjct: 57  MYRHVLKDFSLD--FSKESVQELFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAP 114

Query: 121 NHVKPSFKRVSLREGIKRIY 140
             ++P F +++   G+K ++
Sbjct: 115 KVIEPKFSKINPINGVKNLF 134


>gi|297570293|ref|YP_003691637.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2]
 gi|296926208|gb|ADH87018.1| type III secretion exporter [Desulfurivibrio alkaliphilus AHT2]
          Length = 104

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+ALRY   +  AP +VAKG   +A+K+  IA EH +PI E+  L   +  ++ 
Sbjct: 18  TPPRKKAVALRYDAEQQSAPQMVAKGSGTVAEKLIAIAREHGVPIHEDADLTE-ILSRLD 76

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
           +   IPP  Y  VA+++  IY 
Sbjct: 77  LYQEIPPETYLLVAEILAFIYR 98


>gi|185177885|pdb|3BZL|C Chain C, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177887|pdb|3BZL|D Chain D, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177889|pdb|3BZO|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177903|pdb|3C00|B Chain B, Crystal Structural Of The Mutated G247t EscuSPAS C-
           Terminal Domain
          Length = 83

 Score = 99.9 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +   
Sbjct: 1   PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|295399795|ref|ZP_06809776.1| type III secretion exporter [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111693|ref|YP_003990009.1| type III secretion exporter [Geobacillus sp. Y4.1MC1]
 gi|294978198|gb|EFG53795.1| type III secretion exporter [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216794|gb|ADP75398.1| type III secretion exporter [Geobacillus sp. Y4.1MC1]
          Length = 92

 Score = 99.5 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++APV+VAKG+  +A+ +   A +H IPI E+PSL + L  ++ IN  IP
Sbjct: 8   AVALSYDANIHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSELEINEVIP 66

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA++   IY  
Sbjct: 67  EDLYRLVAEVFAFIYRL 83


>gi|320529139|ref|ZP_08030231.1| FlhB domain protein [Selenomonas artemidis F0399]
 gi|320138769|gb|EFW30659.1| FlhB domain protein [Selenomonas artemidis F0399]
          Length = 107

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 254 IRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIP 313
           +    M     A  +       A+A+RY   ++ AP + AKG++L+A ++   A ++ IP
Sbjct: 1   MPENWMMDAPPADDLSEEQEQKAVAVRYDVEKDRAPRVTAKGRSLVADRILAEAKKNGIP 60

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +++  SL   L   + I+  IPP  Y+ +A+++  +Y 
Sbjct: 61  VYQNKSLVNMLMA-LEIDREIPPELYRTIAEVLAHVYR 97


>gi|319789483|ref|YP_004151116.1| type III secretion exporter [Thermovibrio ammonificans HB-1]
 gi|317113985|gb|ADU96475.1| type III secretion exporter [Thermovibrio ammonificans HB-1]
          Length = 92

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y + +  AP +VAKG+ ++A+K+ +IA    +P+ +   L   L  QV + + IP
Sbjct: 6   AAALKYERGKMRAPRVVAKGEGVVAEKIVEIARRSGVPVLQNRGLVEFLL-QVDLGAEIP 64

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+AVA+L+  +Y 
Sbjct: 65  PELYRAVAELLAYVYR 80


>gi|304404230|ref|ZP_07385892.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9]
 gi|304347208|gb|EFM13040.1| type III secretion exporter [Paenibacillus curdlanolyticus YK9]
          Length = 104

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E  APV++AKG+  +A+ +   A E+ +PI E+ SL   L  ++ I+  IP
Sbjct: 20  AVALKYEPGERSAPVVIAKGKGHLAEAIVAKAAENGVPIQEDSSLVEVL-SKLDIDQEIP 78

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+++  +Y 
Sbjct: 79  QELYALVAEILSFVYR 94


>gi|39936268|ref|NP_948544.1| Type III secretion proteins related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris CGA009]
 gi|39650123|emb|CAE28646.1| Type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris CGA009]
          Length = 91

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           + T  T  ALA+        AP +VAKG+ ++  K+ ++A +H+IPI E   LA +L   
Sbjct: 1   MTTTDTKNALAIALHYDYAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SH 59

Query: 328 VPINSAIPPVFYKAVAQLIYKIYHK 352
           V +   IP   YKAVA+++  +   
Sbjct: 60  VELGDEIPEELYKAVAEVLAFVLRL 84


>gi|152983240|ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacterium sp. Marseille]
 gi|151283317|gb|ABR91727.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 95

 Score = 99.1 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+AL Y Q+ + AP +VAKG+  IA+++ + A EH + I E   L  +L  QV 
Sbjct: 4   TTPPQQAVALAY-QSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELV-ALLLQVE 61

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
           ++  IPP  Y+AVA+L+  +Y 
Sbjct: 62  LDEHIPPALYRAVAELLAWLYR 83


>gi|92117130|ref|YP_576859.1| type III secretion protein [Nitrobacter hamburgensis X14]
 gi|91800024|gb|ABE62399.1| type III secretion protein [Nitrobacter hamburgensis X14]
          Length = 89

 Score = 99.1 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL Y +  + AP +VAKG+  +  K+ ++A EH+IPI E   LA +L   V +   
Sbjct: 8   QVAVALHYDKG-SGAPRVVAKGRGSLGAKIIEVAREHDIPIEENEVLAGAL-SHVELGDE 65

Query: 334 IPPVFYKAVAQLIYKIYHK 352
           IP   YKAVA+++  +   
Sbjct: 66  IPSELYKAVAEVLVFVLRL 84


>gi|297538192|ref|YP_003673961.1| type III secretion exporter [Methylotenera sp. 301]
 gi|297257539|gb|ADI29384.1| type III secretion exporter [Methylotenera sp. 301]
          Length = 119

 Score = 99.1 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
            + NP   A+AL Y   E  AP +VAKG+  IA+++   A EH++ + E   L  +L  Q
Sbjct: 25  SVVNPNQQAIALAYAAGEY-APKVVAKGRGAIAEQIIARAKEHDVFVHESKDLV-ALLMQ 82

Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
           V ++  IPP  Y+A+A+++  +Y  +
Sbjct: 83  VDLDDHIPPALYQAIAEILAWLYKLE 108


>gi|167630262|ref|YP_001680761.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167593002|gb|ABZ84750.1| flhb domain protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 99

 Score = 99.1 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY  + + AP ++A G+  +A+K+ +IA E  IP++E+P+L + L  ++ +   IP
Sbjct: 15  AVALRYDPSADAAPKVIATGKGHLARKILEIAREKEIPVYEDPTLVQ-LLSKLDLGVEIP 73

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+ VA+++  +Y  
Sbjct: 74  PELYRMVAEVLAFVYRL 90


>gi|83647067|ref|YP_435502.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Hahella chejuensis KCTC 2396]
 gi|83635110|gb|ABC31077.1| uncharacterized flagellar protein FhlB cytoplasmic domain [Hahella
           chejuensis KCTC 2396]
          Length = 116

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   +  AP + AKG+  +A+++  IA EH +P++E P L RSL  Q+ +   IP
Sbjct: 24  AIALFYDGKQ--APKVSAKGEADLAEEIIAIAREHGVPLYENPELVRSL-AQLDLGDEIP 80

Query: 336 PVFYKAVAQLIYKIYHKK 353
            + Y+ +A++I   YH +
Sbjct: 81  ELLYRVIAEIIAFAYHIQ 98


>gi|149183637|ref|ZP_01862054.1| flagellar biosynthesis [Bacillus sp. SG-1]
 gi|148848654|gb|EDL62887.1| flagellar biosynthesis [Bacillus sp. SG-1]
          Length = 94

 Score = 98.7 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +  AP +VAKG+ LIA+ + + A EH +P+ E+ +L   L   + IN +IP
Sbjct: 12  AIALQYESEKQQAPKVVAKGKGLIAENILEKAREHGVPVQEDRNLVE-LLGNLDINESIP 70

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+AVA++   +Y 
Sbjct: 71  EELYQAVAEVFAFLYR 86


>gi|327398785|ref|YP_004339654.1| type III secretion exporter [Hippea maritima DSM 10411]
 gi|327181414|gb|AEA33595.1| type III secretion exporter [Hippea maritima DSM 10411]
          Length = 83

 Score = 98.3 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E++AP +VAKG+  +A K+ K A +H+I I ++P LA SL+K V +N  IP
Sbjct: 8   AVALRYKNQEDNAPKVVAKGRGFLADKIEKTAKKHSIYIEKDPLLAESLYK-VKLNEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  IY
Sbjct: 67  EELYEAVAKILAYIY 81


>gi|89094428|ref|ZP_01167368.1| probable flagellar biosynthesis-related protein [Oceanospirillum
           sp. MED92]
 gi|89081320|gb|EAR60552.1| probable flagellar biosynthesis-related protein [Oceanospirillum
           sp. MED92]
          Length = 109

 Score = 98.3 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y Q    AP++VAKG   IA+++  +A E+ I I E P L   L + + +   IP
Sbjct: 15  AIALKYDQELGKAPLIVAKGMGEIAEQIINLAEENGIHIHESPELVEVLIR-LELGDEIP 73

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+A+A++I   Y  K
Sbjct: 74  ESLYRAIAEVIAFAYSLK 91


>gi|85859194|ref|YP_461396.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
 gi|85722285|gb|ABC77228.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
          Length = 92

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A A+RY  T + AP + AKG   +A+K+ ++A ++NIP+  +P L + L + + I+  
Sbjct: 5   QLAAAIRYDGTVDVAPKVTAKGCGFVAEKIIELAQKNNIPVRNDPGLVQILCR-LDIDEQ 63

Query: 334 IPPVFYKAVAQLIYKIY 350
           IP   YKAVA+++  +Y
Sbjct: 64  IPEDLYKAVAEILAYVY 80


>gi|300982208|ref|ZP_07175920.1| conserved domain protein [Escherichia coli MS 200-1]
 gi|300307278|gb|EFJ61798.1| conserved domain protein [Escherichia coli MS 200-1]
          Length = 149

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNL 120
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++     L  
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGGWYLAE 117

Query: 121 NHVKPSF 127
           N    SF
Sbjct: 118 NPCSRSF 124


>gi|149376614|ref|ZP_01894374.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter algicola DG893]
 gi|149359132|gb|EDM47596.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter algicola DG893]
          Length = 100

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y      APV+ A G + +A+++ +IA EHN+P++E P LA S+  ++ +N  IP
Sbjct: 13  AVALKYDGE--RAPVIAASGTHELAEEIIRIAREHNVPLYENPELA-SILARLELNDEIP 69

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ VA+++   ++ +
Sbjct: 70  ETLYRVVAEILAFAFNLQ 87


>gi|229541105|ref|ZP_04430165.1| conserved hypothetical protein [Bacillus coagulans 36D1]
 gi|229325525|gb|EEN91200.1| conserved hypothetical protein [Bacillus coagulans 36D1]
          Length = 96

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + APV+ AKG+  +A+++ + A + N+PI ++P LA +L  ++ IN AIP
Sbjct: 11  AVALQYSPDAHSAPVVKAKGKGDVARRIIEEAKKANVPIQQDPDLA-ALLGRLDINEAIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y AVA++   IY  
Sbjct: 70  EELYAAVAEVFAMIYRL 86


>gi|154175297|ref|YP_001407951.1| FlhB domain-containing protein [Campylobacter curvus 525.92]
 gi|112802155|gb|EAT99499.1| FlhB domain protein [Campylobacter curvus 525.92]
          Length = 87

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G   IA K+  +A EH IPI E+P L   +  +V I+  IP
Sbjct: 8   AVALGYNREKNSAPKVLATGSGEIANKIISLAREHEIPIKEDPDLIE-ILSKVEIDQEIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   +Y 
Sbjct: 67  PNLYKAVAEIFSFLYK 82


>gi|313673501|ref|YP_004051612.1| type iii secretion exporter [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940257|gb|ADR19449.1| type III secretion exporter [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 87

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           ALRY Q ++ AP +VAKG+ +IA+K+ + A EHN+ I E+P L  +L+K + I   IP  
Sbjct: 9   ALRYDQEKDSAPKVVAKGRGIIAEKILEKAKEHNVLIKEDPDLLEALYK-LDIYQEIPEN 67

Query: 338 FYKAVAQLIYKIYH 351
            Y+ VA+++ ++Y 
Sbjct: 68  LYRVVAEILSEVYR 81


>gi|192291990|ref|YP_001992595.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
 gi|316933568|ref|YP_004108550.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
 gi|192285739|gb|ACF02120.1| type III secretion protein [Rhodopseudomonas palustris TIE-1]
 gi|315601282|gb|ADU43817.1| type III secretion exporter [Rhodopseudomonas palustris DX-1]
          Length = 91

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y      AP +VAKG+ ++  K+ ++A +H+IPI E   LA +L   V +   I
Sbjct: 10  LAIALHYD--YAGAPRVVAKGKGVLGAKIIEVAKQHDIPIEENEMLAGAL-SHVELGDEI 66

Query: 335 PPVFYKAVAQLIYKIYHK 352
           P   YKAVA+++  +   
Sbjct: 67  PEELYKAVAEVLAFVLRL 84


>gi|157165363|ref|YP_001466488.1| FlhB domain-containing protein [Campylobacter concisus 13826]
 gi|112800644|gb|EAT97988.1| FlhB domain protein [Campylobacter concisus 13826]
          Length = 87

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +++++AP ++A G   IA K+  +A EH+IPI E+P L   +  +V ++  IP
Sbjct: 8   AVALGYNRSQDNAPKVLASGAGEIANKIISLAKEHDIPIKEDPDLIE-ILSKVEVDQEIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   +Y 
Sbjct: 67  PNLYKAVAEIFSFLYK 82


>gi|119503687|ref|ZP_01625770.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma
           proteobacterium HTCC2080]
 gi|119460749|gb|EAW41841.1| flagellar biosynthetic protein (FlhB)-like protein [marine gamma
           proteobacterium HTCC2080]
          Length = 97

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++ALRY    + AP++VA G   IA  ++  A E  +P+ E+P LA+ L  QVP+   IP
Sbjct: 16  SVALRYD--GSQAPIVVATGSGEIADAIKAKAEESGVPVVEDPRLAQ-LLSQVPLGEEIP 72

Query: 336 PVFYKAVAQLIYKIYHKKI 354
              Y+AVA+++  +   ++
Sbjct: 73  AELYRAVAEVLVFVMQMEM 91


>gi|260887870|ref|ZP_05899133.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185]
 gi|330838735|ref|YP_004413315.1| type III secretion exporter [Selenomonas sputigena ATCC 35185]
 gi|260862376|gb|EEX76876.1| flagellar biosynthesis protein [Selenomonas sputigena ATCC 35185]
 gi|329746499|gb|AEB99855.1| type III secretion exporter [Selenomonas sputigena ATCC 35185]
          Length = 110

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   +  AP +VAKG+  +A+ +   A ++ IP+++  SL   L   + ++  IP
Sbjct: 24  AVALRYAPEKQHAPKVVAKGRGFVAENILAAAQKNAIPVYQNKSLVNMLMA-LELDREIP 82

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+AVA+++  +Y 
Sbjct: 83  PELYRAVAEVLAYVYR 98


>gi|292670874|ref|ZP_06604300.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541]
 gi|292647495|gb|EFF65467.1| flagellar biosynthesis protein FlhB [Selenomonas noxia ATCC 43541]
          Length = 110

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + AP + AKG++L+A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 25  AVAIKYDVKNDQAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 83

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ +A+++  +Y 
Sbjct: 84  PELYRTIAEVLAHVYR 99


>gi|308068636|ref|YP_003870241.1| FhlB domain-containing protein [Paenibacillus polymyxa E681]
 gi|305857915|gb|ADM69703.1| FhlB domain-containing protein [Paenibacillus polymyxa E681]
          Length = 99

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++AP++VAKG   +A  + + A EH +P+ E+ +L   L  ++ ++  IP
Sbjct: 15  AVALKYTPGESEAPIVVAKGSGRVADSILEKAKEHGVPVQEDAALVEVL-SKLDLDEQIP 73

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  IY  
Sbjct: 74  AELYQLVAEVLTYIYQM 90


>gi|206889780|ref|YP_002247874.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741718|gb|ACI20775.1| flagellar biosynthetic protein FlhB [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 88

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ AP +VAKG+  IA+K+ ++A +H +P+ E+ +L   L  ++ I   IP
Sbjct: 7   AVALKYEAEKDAAPKVVAKGRGFIAQKIIELARQHGVPMKEDEALVEVL-SKLDIYEEIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              YKAVA+++  +Y  K
Sbjct: 66  VELYKAVAEILVFVYQVK 83


>gi|91977593|ref|YP_570252.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris BisB5]
 gi|91684049|gb|ABE40351.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Rhodopseudomonas palustris BisB5]
          Length = 88

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL Y +    AP +VAKG+  I  K+ ++A +H+IPI E   LA +L   V +   
Sbjct: 8   QIAVALHYDR--AGAPRVVAKGKGTIGAKIIEVAKQHDIPIEENEVLAGAL-SHVELGEE 64

Query: 334 IPPVFYKAVAQLIYKIYHK 352
           IP   YKAVA+++  +   
Sbjct: 65  IPEELYKAVAEVLAFVLKL 83


>gi|90424888|ref|YP_533258.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
 gi|90106902|gb|ABD88939.1| type III secretion protein [Rhodopseudomonas palustris BisB18]
          Length = 88

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y +    AP ++AKG+  I  K+ ++A  H+IPI E   LA +L  +V I
Sbjct: 5   GPNQIAVALHYDR--TGAPTVIAKGKGAIGAKIVEVARAHDIPIEENEILAGAL-SKVEI 61

Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
              IP   YKAVA+++  +   
Sbjct: 62  GDEIPQELYKAVAEVLVFVLRL 83


>gi|220934523|ref|YP_002513422.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995833|gb|ACL72435.1| type III secretion protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 94

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y  +  +AP + A G   +A+++ +IA EH++P+ E+  L  +L  QVP+
Sbjct: 6   KPPRKAVALHY--SGRNAPRVTASGVGQVAERILEIAREHDVPVHEDALLTAAL-SQVPL 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y AVA+++  +Y
Sbjct: 63  GDEIPENLYVAVAEVLAFVY 82


>gi|154686024|ref|YP_001421185.1| YlqH [Bacillus amyloliquefaciens FZB42]
 gi|154351875|gb|ABS73954.1| YlqH [Bacillus amyloliquefaciens FZB42]
          Length = 93

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y + ++ AP +VA G+  +A+ + K A +  +PI E+ +L   L + + +
Sbjct: 5   TPLRRAVALHYDRQKDQAPKVVATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTV 63

Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
           +  IP   Y+ VA++   +Y  
Sbjct: 64  DDQIPEALYETVAEIFSFVYRL 85


>gi|75675592|ref|YP_318013.1| type III secretion proteins, related to flagellar biosynthesis
           protein FlhB [Nitrobacter winogradskyi Nb-255]
 gi|74420462|gb|ABA04661.1| type III secretion protein, related to flagellar biosynthesis
           protein FlhB [Nitrobacter winogradskyi Nb-255]
          Length = 89

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL Y +  + AP +VAKG+  +  K+ ++A EH+IPI +   LA +L   V +   
Sbjct: 8   QVAVALHYDKG-SGAPRVVAKGRGSLGAKIIEVANEHDIPIEQNEVLADAL-SHVELGDE 65

Query: 334 IPPVFYKAVAQLIYKIYHK 352
           IP   YKAVA+++  +   
Sbjct: 66  IPAELYKAVAEVLVFVLRM 84


>gi|30250018|ref|NP_842088.1| flagellar biosynthetic protein [Nitrosomonas europaea ATCC 19718]
 gi|30139125|emb|CAD85989.1| possible similar to flagellar biosynthetic protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 119

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y      AP +VAKG+ LIA+++ + A E  + + E   L  +L  QV +
Sbjct: 25  TPIPGAVALAYHSG-MTAPQVVAKGRGLIAEEIIRRAQEAGVYVHESAELV-ALLMQVDL 82

Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
           +  IPP  Y AVA+L+  +Y  +
Sbjct: 83  DDHIPPELYIAVAELLAWLYRLE 105


>gi|126654068|ref|ZP_01725894.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905]
 gi|126589448|gb|EAZ83595.1| hypothetical protein BB14905_21173 [Bacillus sp. B14905]
          Length = 100

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + D+P +VAKG+  IA+ +   A EHN+PI+E+P+L   L  Q+ +N +IP
Sbjct: 11  AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVH-LLGQLDLNESIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA++   IY  
Sbjct: 70  EELYQAVAEVFAFIYRL 86


>gi|88704263|ref|ZP_01101977.1| FlhB domain protein [Congregibacter litoralis KT71]
 gi|88701314|gb|EAQ98419.1| FlhB domain protein [Congregibacter litoralis KT71]
          Length = 100

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M +   R+      P   + AL Y      AP+LVAKG+N IA ++ ++A ++++PI ++
Sbjct: 1   MSDNDKRSQSSAKGPATQSAALSYSGE--GAPLLVAKGENAIADRIVELASQNDVPIVQD 58

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
             L   L  Q+P+   +PP  Y AVA+++  +Y  
Sbjct: 59  GQLTE-LLCQIPLGEEVPPELYLAVAEVLAYVYRL 92


>gi|185177895|pdb|3BZV|B Chain B, Crystal Structural Of The Mutated T264a Escu C-Terminal
           Domain
          Length = 83

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P H A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +   
Sbjct: 1   PAHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|239826600|ref|YP_002949224.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
 gi|239806893|gb|ACS23958.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
          Length = 90

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++APV+VAKG+  +A+ +   A +H IPI E+PSL + L  ++ IN  IP
Sbjct: 8   AVALSYDSNVHEAPVVVAKGKGHVAEAIIDAAKQHGIPIQEDPSLVQ-LLSELEINETIP 66

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  VA+L   IY  
Sbjct: 67  EDLYYLVAELFAFIYRL 83


>gi|85715097|ref|ZP_01046081.1| type III secretion protein [Nitrobacter sp. Nb-311A]
 gi|85698012|gb|EAQ35885.1| type III secretion protein [Nitrobacter sp. Nb-311A]
          Length = 89

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL Y +  + AP +VAKG   +  K+ ++A EH+IPI E   LA +L   V +   
Sbjct: 8   QVAVALHYDKG-SGAPRVVAKGSGSLGAKIIEVAKEHDIPIEENEVLAGAL-SHVELGDE 65

Query: 334 IPPVFYKAVAQLIYKIYHK 352
           IP   YKAVA+++  +   
Sbjct: 66  IPAELYKAVAEVLVFVLRM 84


>gi|169827108|ref|YP_001697266.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41]
 gi|168991596|gb|ACA39136.1| flagellar biosynthesis protein [Lysinibacillus sphaericus C3-41]
          Length = 100

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + D+P +VAKG+  IA+ +   A EHN+PI+E+P+L + L  Q+ +N +IP
Sbjct: 11  AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA++   IY  
Sbjct: 70  EELYQAVAEVFAFIYRL 86


>gi|257092546|ref|YP_003166187.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045070|gb|ACV34258.1| putative flagellar biosynthetic protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 108

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           TNP   A+AL Y QT + AP +VAKG+ L+A+++   A+EH + + E   L  SL  QV 
Sbjct: 6   TNPLKNAVALAYSQT-DAAPRVVAKGRGLVAEQIIARAHEHGVYVHESAELV-SLLLQVD 63

Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353
           ++  IPP  Y AVA+L+  +Y  +
Sbjct: 64  LDQHIPPQLYLAVAELLAWLYRLE 87


>gi|299536764|ref|ZP_07050072.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1]
 gi|298727776|gb|EFI68343.1| flagellar biosynthesis protein [Lysinibacillus fusiformis ZC1]
          Length = 100

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + D+P +VAKG+  IA+ +   A EHN+PI+E+P+L + L  Q+ +N +IP
Sbjct: 11  AIALTYKLGQFDSPTVVAKGKGKIAENILARANEHNVPIYEDPNLVQ-LLGQLDLNESIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA++   IY  
Sbjct: 70  EELYQAVAEVFAFIYRL 86


>gi|121533785|ref|ZP_01665612.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307776|gb|EAX48691.1| flagellar biosynthetic protein (FlhB)-like protein [Thermosinus
           carboxydivorans Nor1]
          Length = 96

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY Q    AP +VAKG   +A+++   A +H +P++++ +LA SL   V ++  IP
Sbjct: 12  AIALRYDQQTQQAPKVVAKGSGYVAEQILATAAQHAVPVYKDTALA-SLLMAVELDKEIP 70

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ VA+++  IY 
Sbjct: 71  PELYQVVAEVLAYIYR 86


>gi|71906417|ref|YP_284004.1| flagellar biosynthetic protein [Dechloromonas aromatica RCB]
 gi|71846038|gb|AAZ45534.1| possible flagellar biosynthetic protein [Dechloromonas aromatica
           RCB]
          Length = 93

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           ++PT  A+AL Y QT + AP +VAKG+ LIA+++   A EH + + E P L  +L  QV 
Sbjct: 6   SDPTREAIALAYSQT-DAAPRVVAKGKGLIAEQIIARAKEHGVYVHESPELV-ALLTQVD 63

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
           ++  IPP  Y A+A+L+  +Y 
Sbjct: 64  LDEHIPPQLYIAIAELLAWLYR 85


>gi|310641524|ref|YP_003946282.1| flagellar protein fhlb-like protein [Paenibacillus polymyxa SC2]
 gi|309246474|gb|ADO56041.1| Flagellar protein FhlB-like protein [Paenibacillus polymyxa SC2]
          Length = 99

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++AP++VAKG   IA  + + A EH +P+ E+ +L   L  ++ ++  IP
Sbjct: 15  AVALKYTPGESEAPIVVAKGSGRIADSILEKAKEHGVPVQEDAALVEVL-SKLDLDEQIP 73

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  IY  
Sbjct: 74  AELYQLVAEVLTYIYQM 90


>gi|289208366|ref|YP_003460432.1| type III secretion exporter [Thioalkalivibrio sp. K90mix]
 gi|288943997|gb|ADC71696.1| type III secretion exporter [Thioalkalivibrio sp. K90mix]
          Length = 119

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 253 RIRHKMMEATSRATIIITNPTH-YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHN 311
             + +         +    P    A+AL + +    AP + A G  + A+++ +IA EH 
Sbjct: 1   MSKRRPPHEHDEPYVEPRGPRRPQAVALEWDR--QRAPRITASGSGVTAEQILRIAEEHG 58

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           IP+ ++P L  +L  QVP+   +P   Y AVA+++  I+
Sbjct: 59  IPLHQDPGLTEAL-AQVPLGEEVPESLYVAVAEVLAFIF 96


>gi|185177914|pdb|3C03|C Chain C, Crystal Structure Of The Escu C-Terminal Domain With P263a
           Mutation,Space Group P 1 21 1
          Length = 83

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 44/74 (59%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +    
Sbjct: 2   THIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQ 61

Query: 333 AIPPVFYKAVAQLI 346
            I   F++ VAQLI
Sbjct: 62  YITEDFFEPVAQLI 75


>gi|329929329|ref|ZP_08283082.1| putative FlhB domain protein [Paenibacillus sp. HGF5]
 gi|328936698|gb|EGG33141.1| putative FlhB domain protein [Paenibacillus sp. HGF5]
          Length = 104

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++APV+VAKGQ  +A+ +   A EH +P+ E+ +L   +  ++ ++  IP
Sbjct: 17  AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVE-ILSKLDLDQQIP 75

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++  +Y 
Sbjct: 76  EELYQLVAEVLTYVYR 91


>gi|322419281|ref|YP_004198504.1| type III secretion exporter [Geobacter sp. M18]
 gi|320125668|gb|ADW13228.1| type III secretion exporter [Geobacter sp. M18]
          Length = 94

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   E  AP ++AKG  + A+ +  +A EH + + + P L  ++  QV +++ IP
Sbjct: 11  AVAMAYSPEEGSAPRVIAKGSGISAEAIISLAREHGVYVHQSPELV-AMLMQVDLDAEIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+AVA+L+  +Y  
Sbjct: 70  PELYQAVAELLAWLYSL 86


>gi|261408003|ref|YP_003244244.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
 gi|261284466|gb|ACX66437.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. Y412MC10]
          Length = 104

 Score = 96.0 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++APV+VAKGQ  +A+ +   A EH +P+ E+ +L   +  ++ ++  IP
Sbjct: 17  AVALKYTPGESEAPVVVAKGQGKLAESILDKAKEHGVPVQEDAALVE-ILSKLDLDQQIP 75

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++  +Y 
Sbjct: 76  EELYQLVAEVLTYVYR 91


>gi|185177901|pdb|3BZZ|B Chain B, Crystal Structural Of The Mutated R313t EscuSPAS C-
           Terminal Domain
          Length = 83

 Score = 96.0 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LA SL+K +   
Sbjct: 1   PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLATSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|209884850|ref|YP_002288707.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
 gi|209873046|gb|ACI92842.1| flagellar biosynthetic protein FlhB [Oligotropha carboxidovorans
           OM5]
          Length = 91

 Score = 96.0 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y +    AP +VAKG+  IA+K+ ++A EH++ I E   LA +L   V I   I
Sbjct: 12  LAVALHYDRK--GAPRVVAKGKGEIARKIIEVAAEHDVAIEENEILAGAL-SNVEIGDEI 68

Query: 335 PPVFYKAVAQLIYKIYHK 352
           P   YKAVA+++  +   
Sbjct: 69  PAELYKAVAEVLIFVLRL 86


>gi|117926314|ref|YP_866931.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus
           sp. MC-1]
 gi|117610070|gb|ABK45525.1| flagellar biosynthetic protein (FlhB)-like protein [Magnetococcus
           sp. MC-1]
          Length = 100

 Score = 96.0 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   ++ +P + A G+  +A+ + K A E ++P+ E+P L   L +++P+ S +P
Sbjct: 16  AVALRYRLGKDTSPRVTASGRGRLAETILKRAKEGDVPLLEDPDLVH-LLEKIPVGSEVP 74

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+AVA+++  IY 
Sbjct: 75  PQLYQAVAEVLAYIYR 90


>gi|258592464|emb|CBE68773.1| Cytoplasmic domain of flagellar protein FhlB-like protein protein
           [NC10 bacterium 'Dutch sediment']
          Length = 104

 Score = 96.0 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   EN AP +VA G+  IA+++  +A  H I + ++P L   L  ++ I  AIP
Sbjct: 14  AVALKYEAGENGAPEVVASGRGRIAEQIIALAKAHGIYVKQDPELVEVL-SRLDIGDAIP 72

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y  VA+++  +Y 
Sbjct: 73  PELYAVVAEILAFVYR 88


>gi|134095072|ref|YP_001100147.1| putative part of export apparatus for flagellar proteins (partial)
           [Herminiimonas arsenicoxydans]
          Length = 97

 Score = 96.0 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y Q+ + AP +VAKG+ LIA+++ + A EH + I E   L  +L  QV +
Sbjct: 8   KPPPSAVALAY-QSGDSAPRIVAKGRGLIAEQIIERAKEHGVAIHESKELV-ALLLQVEL 65

Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
           +  IPP  Y+AVA+L+  +Y 
Sbjct: 66  DDNIPPALYRAVAELLAWLYR 86


>gi|302670908|ref|YP_003830868.1| FlhB domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395381|gb|ADL34286.1| FlhB domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 98

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E+ AP ++A G+  +A K+ + A E+ IP+ E+  LA +L  ++ I   IP
Sbjct: 13  AVALGYDPNEDGAPKVIASGKGALADKIIEQAKENKIPVHEDDKLADTL-SRLEIGEMIP 71

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+ VA+++  +
Sbjct: 72  PELYEVVAEVLVFV 85


>gi|304436819|ref|ZP_07396785.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370191|gb|EFM23850.1| flagellar biosynthetic protein FlhB [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 103

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + AP + AKG++L+A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 18  AVAIKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ +A+++  +Y 
Sbjct: 77  PELYRTIAEVLAHVYR 92


>gi|27380472|ref|NP_772001.1| hypothetical protein bsl5361 [Bradyrhizobium japonicum USDA 110]
 gi|27353636|dbj|BAC50626.1| bsl5361 [Bradyrhizobium japonicum USDA 110]
          Length = 87

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +++P+  A+AL Y +  + APV+VAKG+  I +K+ +IA  ++IPI E   LA +L  +V
Sbjct: 1   MSDPSKLAIALHYEKG-SGAPVVVAKGKGTIGEKIVEIAKANDIPIEENEILAGAL-SKV 58

Query: 329 PINSAIPPVFYKAVAQLIYKIYHK 352
            +   IPP  YKAVA+++  +   
Sbjct: 59  ELGEEIPPDLYKAVAEVLVFVLRL 82


>gi|332798509|ref|YP_004460008.1| type III secretion exporter [Tepidanaerobacter sp. Re1]
 gi|332696244|gb|AEE90701.1| type III secretion exporter [Tepidanaerobacter sp. Re1]
          Length = 101

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y   E++AP ++A G+ +IA+K+ ++A EHNI I+++P+L  +L  Q+ +   IP
Sbjct: 13  ATALKYNSAEDNAPKIIASGKGIIAEKILELAQEHNIAIYKDPALVEALV-QLEVGQEIP 71

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  IY
Sbjct: 72  LELYQAVAEILAFIY 86


>gi|77918709|ref|YP_356524.1| hypothetical protein Pcar_1105 [Pelobacter carbinolicus DSM 2380]
 gi|77544792|gb|ABA88354.1| putative cytoplasmic domain of flagellar protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 90

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +    APV+VA G+  +A+K+   A E  + +  +P L   +  +VP+   IP
Sbjct: 10  AVALTYQKASGKAPVVVASGKGAVAEKILATAGEAGVEVVRDPDLVE-ILDKVPLGQEIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+AVA+++  +Y 
Sbjct: 69  EELYQAVAEILAFVYR 84


>gi|300311379|ref|YP_003775471.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
 gi|300074164|gb|ADJ63563.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y  ++  AP +VAKG+ L+A+ +   A E  + + E   L  SL  QV ++
Sbjct: 7   PLQNAVALAYNASQA-APQVVAKGRGLVAEAIIARARESGVYVHESKELV-SLLMQVELD 64

Query: 332 SAIPPVFYKAVAQLIYKIYH 351
             IPP  Y+ VA+L+  +Y 
Sbjct: 65  QQIPPALYRTVAELLAWLYR 84


>gi|94263289|ref|ZP_01287105.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
 gi|94272298|ref|ZP_01292101.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
 gi|93450174|gb|EAT01485.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
 gi|93456372|gb|EAT06496.1| flagellar protein FhlB-like protein [delta proteobacterium MLMS-1]
          Length = 96

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP LVAKG   +A+K+ ++A EH +PI E+  L   +  ++ +   IP
Sbjct: 16  AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y  VA+++  IY 
Sbjct: 75  PETYLLVAEILAFIYR 90


>gi|296132572|ref|YP_003639819.1| type III secretion exporter [Thermincola sp. JR]
 gi|296031150|gb|ADG81918.1| type III secretion exporter [Thermincola potens JR]
          Length = 100

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     DAP +VA GQ L+A+ + ++A E+NIPI E+P L  +L + + +   IP
Sbjct: 19  AVALEYKPGLQDAPQVVATGQGLVAENIVRLAKEYNIPIEEDPVLVDAL-RVLQLGEEIP 77

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+ VA+++  +   
Sbjct: 78  PELYRVVAEILVFVMDL 94


>gi|185177897|pdb|3BZX|B Chain B, Crystal Structure Of The Mutated H265a Escu C-Terminal
           Domain
          Length = 83

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PT  A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL+K +   
Sbjct: 1   PTAIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLYKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|251797459|ref|YP_003012190.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
 gi|247545085|gb|ACT02104.1| flagellar biosynthetic protein FlhB [Paenibacillus sp. JDR-2]
          Length = 101

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + APV+ AKG+  +A ++ + A EH++P+ ++ SL   L  ++ ++ +IP
Sbjct: 17  AVALKYEPGAHKAPVVTAKGRGYLADQILEQAAEHHVPVQQDSSLVEVL-SKLDVDQSIP 75

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y  VA+++  +Y 
Sbjct: 76  PELYTLVAEILSFVYR 91


>gi|253996297|ref|YP_003048361.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8]
 gi|253982976|gb|ACT47834.1| flagellar protein FhlB-like protein [Methylotenera mobilis JLW8]
          Length = 119

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           NP   A+AL Y  T + AP +VAKG+ LIA+++   A +H++ + E   L  +L  QV +
Sbjct: 25  NPNQQAIALTY-ATGDYAPRVVAKGRGLIAEQIIARAKQHDVFVHESKDLV-ALLMQVDL 82

Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
           +  IPP  Y+A+A+++  +Y  +
Sbjct: 83  DDHIPPTLYQAIAEILSWLYRME 105


>gi|308173570|ref|YP_003920275.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606434|emb|CBI42805.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens
           DSM 7]
 gi|328553497|gb|AEB23989.1| flagellar biosynthesis protein [Bacillus amyloliquefaciens TA208]
 gi|328911711|gb|AEB63307.1| putative flagellar biosynthesis protein [Bacillus amyloliquefaciens
           LL3]
          Length = 93

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + ++ AP ++A G+  +A+ + K A +  +PI E+ +L   L + + ++  IP
Sbjct: 10  AVALHYDRQKDQAPKVIATGRGHVAENIIKEAEKAGVPIQEDRTLVE-LMRHLTVDDQIP 68

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA++   +Y  
Sbjct: 69  EALYETVAEIFSFVYRL 85


>gi|238926781|ref|ZP_04658541.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
 gi|238885313|gb|EEQ48951.1| flagellar biosynthesis protein FlhB [Selenomonas flueggei ATCC
           43531]
          Length = 103

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + AP + AKG++L+A ++   A ++ IP+++  SL   L   + I+  IP
Sbjct: 18  AVAVKYDAKSDRAPRVTAKGRSLVADRILAEARKNGIPVYQNKSLVNMLMA-LEIDREIP 76

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ +A+++  +Y 
Sbjct: 77  PELYRTIAEVLAHVYR 92


>gi|299135221|ref|ZP_07028412.1| type III secretion exporter [Afipia sp. 1NLS2]
 gi|298590198|gb|EFI50402.1| type III secretion exporter [Afipia sp. 1NLS2]
          Length = 91

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y +    AP +VAKG+  IAKK+ ++A EH++ I E   LA +L   V I   I
Sbjct: 12  LAVALHYDRK--GAPRVVAKGKGEIAKKIIEVASEHDVAIQENEVLAGAL-SNVEIGDEI 68

Query: 335 PPVFYKAVAQLIYKIYHK 352
           P   Y+AVA+++  +   
Sbjct: 69  PAELYRAVAEVLVFVMRL 86


>gi|206603123|gb|EDZ39603.1| Probable flagellar biosynthesis protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 100

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y   ++DAPV++A GQ+ IA+K+ +IA E+ IP+   P LA  L + VP    I
Sbjct: 10  IAIALGYHPEKDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAEFLIR-VPPGHPI 68

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA L+  +Y 
Sbjct: 69  PAELYQAVALLLAYLYR 85


>gi|302392093|ref|YP_003827913.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501]
 gi|302204170|gb|ADL12848.1| type III secretion exporter [Acetohalobium arabaticum DSM 5501]
          Length = 96

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y   +N+AP +VAKG N +AKK+   A E++IPI ++ +L ++L  Q+ +   I 
Sbjct: 14  AAALKYDPEQNNAPQVVAKGSNEVAKKIIAKAKENDIPIHQDDTLVKNLI-QLDLEEEIT 72

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  IY  
Sbjct: 73  GELYQIVAEVLSFIYQL 89


>gi|185177899|pdb|3BZY|B Chain B, Crystal Structure Of The Mutated Y316d Escu C-Terminal
           Domain
          Length = 83

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+ L Y   E   P+++  G++  A ++ K+A  ++IP+ E+  LARSL K +   
Sbjct: 1   PTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLDKNIHKG 60

Query: 332 SAIPPVFYKAVAQLI 346
             I   F++ VAQLI
Sbjct: 61  QYITEDFFEPVAQLI 75


>gi|295111515|emb|CBL28265.1| Flagellar biosynthesis pathway, component FlhB [Synergistetes
           bacterium SGP1]
          Length = 95

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y +   +AP + A+G+  IA+K+ + A E ++P+ E+ +L  +L   + +   IP
Sbjct: 9   AVALKYDRETMNAPTVTARGEGFIARKIVERALEADVPVLEDAALVSALL-SLELGEEIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+++  +Y 
Sbjct: 68  AELYTVVARVLTWVYR 83


>gi|169831979|ref|YP_001717961.1| flagellar protein FhlB-like cytoplasmic domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638823|gb|ACA60329.1| flagellar protein FhlB-like cytoplasmic domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 117

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A AL Y    +  P +VA G+ L A ++ ++A    +P++ +P LA +L   + ++  I
Sbjct: 18  VAAALTYEDGPDAVPRVVAVGKGLFAARIEEVARASGVPVYRDPQLAWTL-AGLGLDREI 76

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+ VAQ+I  +Y+ +
Sbjct: 77  PPELYQVVAQVIAWVYYLE 95


>gi|225849676|ref|YP_002729910.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
 gi|225646306|gb|ACO04492.1| flagellar biosynthetic protein FlhB [Persephonella marina EX-H1]
          Length = 92

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY + +NDAP +VAKGQ LIA+++ +IA E+ I I ++  L + +  Q+ I   IP
Sbjct: 7   AVALRYDREKNDAPEVVAKGQGLIAERIVEIAREYGIEIKQDRELVQ-ILSQLDIKQEIP 65

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA+++  IY 
Sbjct: 66  PELYKAVAEILIFIYR 81


>gi|94267692|ref|ZP_01290961.1| FlhB domain protein [delta proteobacterium MLMS-1]
 gi|93451894|gb|EAT02625.1| FlhB domain protein [delta proteobacterium MLMS-1]
          Length = 96

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP LVAKG   +A+K+ ++A EH +PI E+  L   +  ++ +   IP
Sbjct: 16  AVALSYDAAEQSAPQLVAKGSGAVAEKLLELAREHGVPIHEDADLTE-ILSRLDLYQEIP 74

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y  VA+++  IY 
Sbjct: 75  PETYLLVAEILAFIYR 90


>gi|57167848|ref|ZP_00366988.1| FlhB domain protein [Campylobacter coli RM2228]
 gi|305432127|ref|ZP_07401293.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20]
 gi|57020970|gb|EAL57634.1| FlhB domain protein [Campylobacter coli RM2228]
 gi|304444792|gb|EFM37439.1| flagellar biosynthesis protein FlhB [Campylobacter coli JV20]
 gi|315931143|gb|EFV10116.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 93

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A EH +PI E+  L   +  ++ +   IP
Sbjct: 11  AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  YKAVA++   IY  
Sbjct: 70  PNMYKAVAEVFAFIYQM 86


>gi|319649580|ref|ZP_08003736.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2]
 gi|317398742|gb|EFV79424.1| flagellar biosynthesis protein [Bacillus sp. 2_A_57_CT2]
          Length = 98

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP + AKG+ L+A+ +   A EH+IP+ E+P+L   L  ++ IN  IP
Sbjct: 12  AVALTYDPVNQGAPRISAKGKGLVAENILVKAKEHDIPVQEDPALVE-LLGKLNINEGIP 70

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+AVA++   IY 
Sbjct: 71  EELYQAVAEVFVFIYR 86


>gi|320354269|ref|YP_004195608.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032]
 gi|320122771|gb|ADW18317.1| type III secretion exporter [Desulfobulbus propionicus DSM 2032]
          Length = 102

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q +  AP ++A G NLIA+K+   A E  + I E+  L   L  ++P+   IP
Sbjct: 11  AVALLYDQDKGTAPKVIASGSNLIAEKIIATAMEAGVHIREDKDLVE-LLAKIPLGQEIP 69

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ +A+++  +Y
Sbjct: 70  VELYQTIAEVLAFVY 84


>gi|288553079|ref|YP_003425014.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4]
 gi|288544239|gb|ADC48122.1| flagellar biosynthesis pathway [Bacillus pseudofirmus OF4]
          Length = 91

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   + D+P ++AKG+ +IA+++ + A  H+IPI E+ SL   L  Q+ IN  IP
Sbjct: 9   AVALRYDAAKQDSPEVIAKGKGIIAEEIIEKAKNHHIPIQEDASLVE-LLSQLNINQTIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ VA++   IY 
Sbjct: 68  PELYEVVAEVFAFIYR 83


>gi|311068129|ref|YP_003973052.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942]
 gi|310868646|gb|ADP32121.1| putative flagellar biosynthesis protein [Bacillus atrophaeus 1942]
          Length = 93

 Score = 93.7 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y + ++ AP ++A G+  IA+ +   A +  +PI E+ +L   L + + +
Sbjct: 5   TPLRKAVALHYDEQKDKAPKVIATGRGHIAENIIAEAKKAGVPIQEDRTLVE-LMRHLTV 63

Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
           +  IP   Y+ VA++   +Y  
Sbjct: 64  DDQIPEALYETVAEIFSFVYKL 85


>gi|224826964|ref|ZP_03700062.1| putative flagellar biosynthesis-related protein [Lutiella
           nitroferrum 2002]
 gi|224600797|gb|EEG06982.1| putative flagellar biosynthesis-related protein [Lutiella
           nitroferrum 2002]
          Length = 110

 Score = 93.7 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q    AP +VAKG   +A+++ + A E  + + + P+L  SL  QV ++  IP
Sbjct: 13  AIALSY-QDGARAPKVVAKGYGELAERIIERAQEAGVFVHDSPALV-SLLMQVDLDQQIP 70

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  +Y
Sbjct: 71  PELYRAVAEVLAFVY 85


>gi|308273541|emb|CBX30143.1| hypothetical protein N47_D29520 [uncultured Desulfobacterium sp.]
          Length = 92

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY+     AP ++A G+  +A+K+ ++A EHNI I  +P L   L  Q+  +  IP
Sbjct: 10  AVALRYVPEREQAPRVIATGKGKLAEKIIQVAKEHNIHIHSDPDLVEML-SQLKPDQEIP 68

Query: 336 PVFYKAVAQLIYKIYHK 352
              YK VA+++  +Y  
Sbjct: 69  SDLYKVVAEILVFVYSL 85


>gi|296330823|ref|ZP_06873298.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674341|ref|YP_003866013.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151828|gb|EFG92702.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412585|gb|ADM37704.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 93

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y + ++ AP ++A G+  +A  + K A +  +PI E+ +L   L + + +
Sbjct: 5   TPIRKAVALHYDEQKDKAPKVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTV 63

Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
           +  IP   Y+ VA++   IY  
Sbjct: 64  DDQIPEALYETVAEIFSFIYRL 85


>gi|153952619|ref|YP_001398106.1| FlhB domain-containing protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152940065|gb|ABS44806.1| FlhB domain protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 93

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A EH +PI E+  L   +  ++ +   IP
Sbjct: 11  AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  YKAVA++   IY  
Sbjct: 70  PNMYKAVAEVFAFIYQM 86


>gi|197118783|ref|YP_002139210.1| FlhB cytoplasmic domain-containing protein [Geobacter bemidjiensis
           Bem]
 gi|197088143|gb|ACH39414.1| uncharacterized FlhB cytoplasmic domain protein-like protein
           [Geobacter bemidjiensis Bem]
          Length = 100

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   E+ AP +VAKG  + A+ +  +A EH + + + P L  SL  QV ++S IP
Sbjct: 11  AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+AVA+L+  +Y  
Sbjct: 69  PELYQAVAELLAWLYSL 85


>gi|114330763|ref|YP_746985.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas
           eutropha C91]
 gi|114307777|gb|ABI59020.1| putative flagellar biosynthetic protein-like protein [Nitrosomonas
           eutropha C91]
          Length = 113

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP +VAKGQ LIA+++ + A E  + + E   L  +L  QV ++  IP
Sbjct: 30  AVALTYHSG-MTAPQVVAKGQGLIAEEIIRRAQEAGVYVHESAELV-ALLMQVDLDEHIP 87

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y A+A+L+  +Y  +
Sbjct: 88  PELYVAIAELLAWLYQLE 105


>gi|57237689|ref|YP_178937.1| FlhB domain-containing protein [Campylobacter jejuni RM1221]
 gi|86150272|ref|ZP_01068499.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152177|ref|ZP_01070389.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153293|ref|ZP_01071497.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597543|ref|ZP_01100777.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612445|ref|YP_001000532.1| FlhB domain-containing protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148926549|ref|ZP_01810231.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157415115|ref|YP_001482371.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005466|ref|ZP_02271224.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205356346|ref|ZP_03223111.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562476|ref|YP_002344255.1| hypothetical protein Cj0848c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283957164|ref|ZP_06374628.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|57166493|gb|AAW35272.1| FlhB domain protein [Campylobacter jejuni RM1221]
 gi|85839388|gb|EAQ56650.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840962|gb|EAQ58212.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843019|gb|EAQ60230.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249511|gb|EAQ72471.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|88190135|gb|EAQ94110.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360182|emb|CAL34976.1| conserved hypothetical protein Cj0848c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145845243|gb|EDK22337.1| hypothetical protein Cj8486_0868c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157386079|gb|ABV52394.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|205345731|gb|EDZ32369.1| hypothetical protein Cj8421_0862 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|283791340|gb|EFC30145.1| putative flagellar biosynthesis protein [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|284926093|gb|ADC28445.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni IA3902]
 gi|307747756|gb|ADN91026.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315058298|gb|ADT72627.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315926508|gb|EFV05890.1| flhB domain protein [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315929380|gb|EFV08585.1| flhB domain protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 93

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A EH +PI E+  L   +  ++ +   IP
Sbjct: 11  AVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  YKAVA++   IY  
Sbjct: 70  PNMYKAVAEVFAFIYQM 86


>gi|124516284|gb|EAY57792.1| probable flagellar biosynthesis protein [Leptospirillum rubarum]
          Length = 100

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y   E+DAPV++A GQ+ IA+K+ +IA E+ IP+   P LA  L + VP    I
Sbjct: 10  IAIALGYHPEEDDAPVVLAAGQDEIARKILEIAAEYRIPVRSSPRLAELLIR-VPPGHPI 68

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA L+  +Y 
Sbjct: 69  PAELYQAVALLLAYLYR 85


>gi|16126150|ref|NP_420714.1| flhB-like protein [Caulobacter crescentus CB15]
 gi|221234921|ref|YP_002517357.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000]
 gi|13423358|gb|AAK23882.1| flhB-related protein [Caulobacter crescentus CB15]
 gi|220964093|gb|ACL95449.1| FlhB-like flagellar protein [Caulobacter crescentus NA1000]
          Length = 87

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y   E +AP +VA GQ  I +K+ + A EH +PI E+P LA++L   + I+  I
Sbjct: 13  IAVALLY--EEPNAPKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQAL-STIEIDEEI 69

Query: 335 PPVFYKAVAQLIYKIYHK 352
           P   Y+AVA+++  +  +
Sbjct: 70  PEALYRAVAEVLSFLLKR 87


>gi|50954412|ref|YP_061700.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950894|gb|AAT88595.1| chemotaxis motility protein A [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 295

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
            AP +VAKG + +A ++R+ A    +P+ ++  LAR+L + VP+   IP   +  VA ++
Sbjct: 209 SAPRVVAKGADFVATRIREEARSAGVPMVQDLPLARALHRDVPLGQPIPNEHFGQVAHVL 268

Query: 347 YKIYHKK 353
             +   +
Sbjct: 269 AFVMMLR 275


>gi|167646750|ref|YP_001684413.1| flhB-like protein [Caulobacter sp. K31]
 gi|167349180|gb|ABZ71915.1| flhB-related protein [Caulobacter sp. K31]
          Length = 90

 Score = 93.3 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+ALRY   E +AP +VA G+  +  K+ + A EH +PI E  +LA++L   + ++  I
Sbjct: 12  IAVALRY--EEPNAPRVVATGRGWLGDKIIETAREHGVPIEENAALAQAL-STIELDEEI 68

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA+++  I  
Sbjct: 69  PEALYRAVAEILGFILR 85


>gi|315648157|ref|ZP_07901258.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
 gi|315276803|gb|EFU40146.1| flagellar biosynthetic protein FlhB [Paenibacillus vortex V453]
          Length = 103

 Score = 93.3 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E++AP++VAKGQ  +A+ +   A EH +P+ E+ +L   +  ++ ++  IP
Sbjct: 17  AVALKYTPGESEAPMVVAKGQGKLAESILDKAKEHGVPVQEDAALVE-ILSKLDLDQQIP 75

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+++  +Y 
Sbjct: 76  AELYQLVAEVLTYVYR 91


>gi|297584023|ref|YP_003699803.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10]
 gi|297142480|gb|ADH99237.1| FlhB domain-containing protein [Bacillus selenitireducens MLS10]
          Length = 98

 Score = 93.3 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y  T + AP + AKG+  +A+++   A EH+IPI E+ SL   L  Q+ I+  IP
Sbjct: 15  AVALGYEVTRDSAPTIKAKGKGYVAEEIISRAKEHDIPIQEDKSLVE-LLSQLEIHEKIP 73

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA++   IY 
Sbjct: 74  EDLYEVVAEVFAFIYR 89


>gi|225849513|ref|YP_002729678.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644207|gb|ACN99257.1| flagellar biosynthetic protein FlhB [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 87

 Score = 93.3 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y + ++ AP +VAKG+  IA+K+ ++A ++ + I E+  L   L   + +   IP
Sbjct: 8   AVALKYERYKDTAPKVVAKGKGEIAQKIIEVARQYGVYIKEDKDLVEVL-SGLDLYQEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              YK VA+L+  IY  K
Sbjct: 67  EDLYKVVAELLAFIYKTK 84


>gi|328544226|ref|YP_004304335.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [polymorphum gilvum SL003B-26A1]
 gi|326413968|gb|ADZ71031.1| Cytoplasmic domain of flagellar protein FhlB-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 105

 Score = 93.3 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y   +  AP + AKG+  +A+++ + A  H +PI  +P LA +L  Q+ I+  I
Sbjct: 23  LAVALHYD--KAGAPTVTAKGRGAVARRIEETARAHGVPIEADPLLAEAL-AQIEIDQEI 79

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA LI  I  
Sbjct: 80  PVELYQAVAVLIGFILR 96


>gi|226939559|ref|YP_002794632.1| flagellar biosynthesis-related protein [Laribacter hongkongensis
           HLHK9]
 gi|226714485|gb|ACO73623.1| probable flagellar biosynthesis-related protein [Laribacter
           hongkongensis HLHK9]
          Length = 114

 Score = 93.3 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +    AP + AKGQ  +A ++ + A +  + + E P L  +L  QV ++S IP
Sbjct: 11  AVALAYREGSV-APKVTAKGQGELALRIIERAQQAGVFVHESPQLV-NLLMQVDLDSQIP 68

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+++  +Y
Sbjct: 69  PELYQAVAEVLAFVY 83


>gi|258511352|ref|YP_003184786.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478078|gb|ACV58397.1| FlhB domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 85

 Score = 93.3 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   ++ AP +VAKG   +AK + + A  H +P+ E+  L  +LF  + ++  IP
Sbjct: 7   AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+AVA+++  IY  +
Sbjct: 66  PELYQAVAEILAYIYRFR 83


>gi|296135643|ref|YP_003642885.1| type III secretion exporter [Thiomonas intermedia K12]
 gi|295795765|gb|ADG30555.1| type III secretion exporter [Thiomonas intermedia K12]
          Length = 108

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY      AP +VAKGQ L+A+ +   A E  + + E P L + L   V +++ IP
Sbjct: 18  AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  ++  +
Sbjct: 77  PALYTAVAELLAWLWRLE 94


>gi|114566998|ref|YP_754152.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337933|gb|ABI68781.1| flagellar biosynthesis [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 89

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   +++ PV+VAKGQ  IA+K++K+A E  +PI E+  LA  L   + +   IP
Sbjct: 9   AVALRYDMEKDEVPVVVAKGQGFIAEKIKKVARESGVPIKEDRELADYLMA-LDLYEEIP 67

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y  VA+++  IY  
Sbjct: 68  PELYAVVAEILAFIYRM 84


>gi|95929897|ref|ZP_01312638.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134193|gb|EAT15851.1| flagellar biosynthetic protein (FlhB)-like [Desulfuromonas
           acetoxidans DSM 684]
          Length = 92

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +  +P   A+A++Y +   DAP++VA G+  +A+ + + A +  + I  +P L   L  +
Sbjct: 1   MSDDPVKKAVAVKYDKEVADAPLIVASGKGQLAENIIQAAEKAGLEISHDPDLVE-LLAK 59

Query: 328 VPINSAIPPVFYKAVAQLIYKIYH 351
           +P+ S IP   Y+AVA+++  +Y 
Sbjct: 60  IPVGSEIPSELYQAVAEILAYVYR 83


>gi|218288274|ref|ZP_03492573.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241633|gb|EED08806.1| flagellar biosynthesis protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 85

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   ++ AP +VAKG   +AK + + A  H +P+ E+  L  +LF  + ++  IP
Sbjct: 7   AVALRYDAQKDLAPRVVAKGAEEVAKAIVRTAEGHRVPVVEQTELVDALFA-LEVDQVIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+AVA+++  IY  +
Sbjct: 66  PELYQAVAEILAYIYRFR 83


>gi|188586969|ref|YP_001918514.1| flagellar biosynthesis protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351656|gb|ACB85926.1| flagellar biosynthesis protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 96

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 268 IITNPTHY--ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +   P H+  A AL+Y Q +N AP L+A GQ L+A ++ + A E  I I+++P LA +L 
Sbjct: 1   MARKPKHFKRAAALKYDQDKNQAPQLIAAGQGLVADEIIRRAEEEGIYIYQDPELANTL- 59

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYH 351
            Q+ +   IP   Y+ VA+++  I  
Sbjct: 60  SQLSLYQEIPEELYQGVAEVLAFIQR 85


>gi|16078671|ref|NP_389490.1| flagellar biosynthesis protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309483|ref|ZP_03591330.1| hypothetical protein Bsubs1_08861 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313808|ref|ZP_03595613.1| hypothetical protein BsubsN3_08797 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318732|ref|ZP_03600026.1| hypothetical protein BsubsJ_08731 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323003|ref|ZP_03604297.1| hypothetical protein BsubsS_08837 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315374|ref|YP_004207661.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5]
 gi|81342418|sp|O34867|YLQH_BACSU RecName: Full=Uncharacterized protein ylqH
 gi|2462966|emb|CAA04418.1| YlqH protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633980|emb|CAB13481.1| putative flagellar biosynthesis protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484159|dbj|BAI85234.1| hypothetical protein BSNT_02627 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021648|gb|ADV96634.1| putative flagellar biosynthesis protein [Bacillus subtilis BSn5]
          Length = 93

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y + ++ AP ++A G+  +A  + K A +  +PI E+ +L   L + + +
Sbjct: 5   TPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVE-LMRHLTV 63

Query: 331 NSAIPPVFYKAVAQLIYKIYHK 352
           +  IP   Y+ VA++   IY  
Sbjct: 64  DDQIPEALYETVAEIFSFIYKL 85


>gi|118474492|ref|YP_892339.1| FlhB domain-containing protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413718|gb|ABK82138.1| FlhB domain protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 87

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  ++AP ++A G+  +A K+ + A +H IPI E+  L   +  ++ IN  IP
Sbjct: 7   AVALGYNKKRDNAPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVE-ILSKIDINQEIP 65

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   +Y 
Sbjct: 66  PNLYKAVAEVFSFLYR 81


>gi|114777940|ref|ZP_01452854.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1]
 gi|114551727|gb|EAU54279.1| FlhB domain protein [Mariprofundus ferrooxydans PV-1]
          Length = 95

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           ++   H A+AL +    + AP + AKG   +A ++ ++A E+NIPI E+  L + +F Q+
Sbjct: 1   MSERKHQAIALNWDPYLDAAPKITAKGSGQLADEIIRLARENNIPIREDRDLVQ-IFSQL 59

Query: 329 PINSAIPPVFYKAVAQLIYKIY 350
            I +++PP  + A+A+++  IY
Sbjct: 60  DIGASVPPEVHTAIAEILAFIY 81


>gi|311695179|gb|ADP98052.1| flagellar protein FhlB cytoplasmic domain protein [marine bacterium
           HP15]
          Length = 104

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +  AP + A G + +A+++ +IA EHN+P++E   LA S+  ++ +N  IP
Sbjct: 12  AVALKYDGEK--APTISATGTHELAEEIIRIAREHNVPLYENAELA-SILARLSLNEEIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A+++   +H +
Sbjct: 69  ESLYRVIAEILAFAFHIR 86


>gi|317129223|ref|YP_004095505.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
 gi|315474171|gb|ADU30774.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
          Length = 100

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y ++E++APV+ AKG+  +A ++ K A E+NIPI E+ SL   +  Q+ +N  IP
Sbjct: 16  AVALGYNRSEDEAPVVKAKGKGYVADEIIKRARENNIPIQEDSSLVE-ILSQLEMNERIP 74

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA++   +Y 
Sbjct: 75  TALYGVVAEVFSFVYR 90


>gi|258515578|ref|YP_003191800.1| hypothetical protein Dtox_2366 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779283|gb|ACV63177.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 104

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALR+   ++ APV+VA G+  IA+ ++K+A E +IPI ++P LA++L   +  N  IP
Sbjct: 23  ASALRFDPNKDQAPVVVATGKGDIARSIKKMAGELHIPIVKDPVLAQTLH-TLGTNIEIP 81

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+++  +Y
Sbjct: 82  EHLYEAVAKVLAYVY 96


>gi|289547861|ref|YP_003472849.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484]
 gi|289181478|gb|ADC88722.1| FlhB domain-containing protein [Thermocrinis albus DSM 14484]
          Length = 87

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY Q ++ APV+VAKG   +A+K+ ++A E+ +P+ E+P L  +L   V +   IP
Sbjct: 6   AVALRYHQEKDRAPVVVAKGMGDVAEKILQLAKEYGVPVVEDPQLVTALMG-VELLEEIP 64

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+AVAQ++  +
Sbjct: 65  PRLYRAVAQILLFV 78


>gi|327441069|dbj|BAK17434.1| uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Solibacillus silvestris StLB046]
          Length = 97

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++  P +VAKG+  IA+ + + A  H +P++E+P+L   L  Q+ +N++IP
Sbjct: 11  AIALSYDPQKSSGPTIVAKGKGKIAENILEKAAMHEVPVYEDPNLVE-LLGQLDLNTSIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA++   IYH 
Sbjct: 70  EELYQAVAEVFAFIYHL 86


>gi|118581817|ref|YP_903067.1| FlhB domain-containing protein [Pelobacter propionicus DSM 2379]
 gi|118504527|gb|ABL01010.1| FlhB domain protein [Pelobacter propionicus DSM 2379]
          Length = 108

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A A+ Y Q    APV+VA+G+ ++A+ +   A E  + I E P L + L  QV  +  IP
Sbjct: 11  AAAISYKQGYY-APVVVARGKGVMAEAIIACAREAGVYIHESPELVQ-LLMQVDTDQFIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+AVA+++  +Y  +
Sbjct: 69  PELYRAVAEVLVWLYRME 86


>gi|82702472|ref|YP_412038.1| flagellar biosynthetic protein-like protein [Nitrosospira
           multiformis ATCC 25196]
 gi|82410537|gb|ABB74646.1| flagellar biosynthetic protein-like protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 101

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +T + AP +VAKG+ L+A+ + + A  H + + E P L  SL  QV ++  IP
Sbjct: 10  AVALAY-RTGDHAPQVVAKGRGLVAENIIREARRHGVFVHESPELV-SLLIQVDLDQHIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+AVA+L+  +Y  +
Sbjct: 68  PQLYRAVAELLVWLYKME 85


>gi|294339812|emb|CAZ88175.1| putative Uncharacterized homolog of the cytoplasmic domain of
           flagellar protein FhlB [Thiomonas sp. 3As]
          Length = 108

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY      AP +VAKGQ L+A+ +   A E  + + E P L + L   V +++ IP
Sbjct: 18  AVALRYDADAAGAPEVVAKGQGLVAEAIINRAKEAGVYVHESPQLVQ-LLMAVDLDTQIP 76

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  ++  +
Sbjct: 77  PALYTAVAELLAWLWRLE 94


>gi|52080210|ref|YP_079001.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580]
 gi|52785587|ref|YP_091416.1| YlqH [Bacillus licheniformis ATCC 14580]
 gi|319646011|ref|ZP_08000241.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2]
 gi|52003421|gb|AAU23363.1| hypothetical protein BL01286 [Bacillus licheniformis ATCC 14580]
 gi|52348089|gb|AAU40723.1| YlqH [Bacillus licheniformis ATCC 14580]
 gi|317391761|gb|EFV72558.1| hypothetical protein HMPREF1012_01275 [Bacillus sp. BT1B_CT2]
          Length = 93

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y + ++ AP +VAKG    A+K+ + A +  +PI E+ +L   L + + ++
Sbjct: 6   PLRRAVALHYDEMKDKAPKVVAKGSGYTAEKIIEEAQKAGVPIQEDATLVE-LMRHLELD 64

Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
             IP   Y+ VA++   +Y  
Sbjct: 65  DHIPEALYEIVAEIFSFVYTL 85


>gi|253700436|ref|YP_003021625.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Geobacter sp. M21]
 gi|251775286|gb|ACT17867.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Geobacter sp. M21]
          Length = 92

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   E+ AP +VAKG  + A+ +  +A EH + + + P L  SL  QV ++S IP
Sbjct: 11  AVAMAY-SGEDGAPRVVAKGSGVTAEAIVSLAQEHGVYVHQSPELV-SLLMQVDLDSEIP 68

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+AVA+L+  +Y  
Sbjct: 69  PELYQAVAELLAWLYSL 85


>gi|254517031|ref|ZP_05129089.1| FlhB domain protein [gamma proteobacterium NOR5-3]
 gi|219674536|gb|EED30904.1| FlhB domain protein [gamma proteobacterium NOR5-3]
          Length = 96

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           TH A AL Y      AP+LVAKG+N IA ++ ++A E+ +PI ++  L   L  Q+P+  
Sbjct: 13  THSA-ALSYSGE--GAPLLVAKGENAIADRIVELAAENGVPIVQDAQLTE-LLCQIPLGD 68

Query: 333 AIPPVFYKAVAQLIYKIYHK 352
            +PP  Y AVA+++  +Y  
Sbjct: 69  EVPPALYVAVAEVLAYVYRL 88


>gi|253573505|ref|ZP_04850848.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847033|gb|EES75038.1| FlhB domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 101

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   + +APV+VAKG+ LIA ++   A EH IPI E+ +L   L  ++ ++  IP
Sbjct: 15  AVALKYDPGQGEAPVVVAKGKGLIADRILDAALEHGIPIQEDAALVEVL-SKLDLDQQIP 73

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+++  IY 
Sbjct: 74  AELYDLVAEILTFIYR 89


>gi|91776332|ref|YP_546088.1| putative flagellar biosynthetic protein [Methylobacillus
           flagellatus KT]
 gi|91710319|gb|ABE50247.1| putative flagellar biosynthetic protein [Methylobacillus
           flagellatus KT]
          Length = 102

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG+ +IA+++   A EH + + E   L  +L  QV ++  IP
Sbjct: 10  AIALAYESG-DFAPRVVAKGRGVIAEQIIAKAKEHGVFVHESREL-LALLMQVDLDDHIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+A+A+++  +Y  +
Sbjct: 68  PALYQAIAEILAWLYRLE 85


>gi|194014522|ref|ZP_03053139.1| FlhB domain protein [Bacillus pumilus ATCC 7061]
 gi|194013548|gb|EDW23113.1| FlhB domain protein [Bacillus pumilus ATCC 7061]
          Length = 91

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           + P   A+AL Y + +  AP +VA G   +A  + + A +  +PI E+ +L   L + + 
Sbjct: 4   SKPLRRAVALHYDEEKQKAPKVVATGSGYVADHIIEEAKKSGVPIQEDRNLVE-LMRHLT 62

Query: 330 INSAIPPVFYKAVAQLIYKIYHK 352
           ++  IP   Y  VA++   IY  
Sbjct: 63  LDEEIPEALYDTVAEIFSFIYRL 85


>gi|222823585|ref|YP_002575159.1| flagellar biosynthesis protein [Campylobacter lari RM2100]
 gi|222538807|gb|ACM63908.1| conserved hypothetical protein, possible flagellar biosynthesis
           protein [Campylobacter lari RM2100]
          Length = 96

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +   T  A+AL Y + + +AP ++A  +   A K+  +A E+ IPI E+  L   L  ++
Sbjct: 1   MAKKTKKAVALGYNKEDQNAPKILANAKGENAAKIISLAKENGIPIKEDKDLVEVL-SKL 59

Query: 329 PINSAIPPVFYKAVAQLIYKIYH 351
            +   IPP  YKAVA++   +Y 
Sbjct: 60  DLGDEIPPNMYKAVAEIFAFLYK 82


>gi|148264415|ref|YP_001231121.1| flagellar protein FhlB-like protein [Geobacter uraniireducens Rf4]
 gi|146397915|gb|ABQ26548.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Geobacter uraniireducens Rf4]
          Length = 94

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y    + AP ++AKG  + A+ +  +A E+ + + E P L  +L  QV  +  IP
Sbjct: 11  AVAMAYDPG-DYAPRVIAKGCGVTAEAIIALARENGVYVHESPDLM-NLLLQVDQDRFIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+AVA+L+  +Y  +
Sbjct: 69  PELYRAVAELLAWLYRLE 86


>gi|163856461|ref|YP_001630759.1| hypothetical protein Bpet2150 [Bordetella petrii DSM 12804]
 gi|163260189|emb|CAP42491.1| hypothetical protein predicted by Glimmer/Critica [Bordetella
           petrii]
          Length = 104

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG   IA  + + A EH + + E   L  SL  QV +++ IP
Sbjct: 16  AVALSYG-EHDTAPRVVAKGYGQIADTIVRTAREHGLYVHESRELV-SLLMQVDLDAHIP 73

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 74  PQLYAAVAELLAWLYRLE 91


>gi|224370762|ref|YP_002604926.1| FlhB1 [Desulfobacterium autotrophicum HRM2]
 gi|223693479|gb|ACN16762.1| FlhB1 [Desulfobacterium autotrophicum HRM2]
          Length = 88

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y +    +P + AKG  ++A+K+  IA +H++P+ ++P L   L   + IN  IP
Sbjct: 6   AVALKYDRAAGSSPKVTAKGSGIVAQKIIDIAEQHDVPVKKDPDLVEVL-AGLDINQEIP 64

Query: 336 PVFYKAVAQLIYKIY 350
              Y AVA+L+  +Y
Sbjct: 65  QEIYVAVAELLAFVY 79


>gi|293605030|ref|ZP_06687424.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC
           43553]
 gi|292816579|gb|EFF75666.1| flagellar biosynthesis protein FlhB [Achromobacter piechaudii ATCC
           43553]
          Length = 105

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   ++ AP +VAKG   +A  + + A E+ + + E   L   L  QV +++ IP
Sbjct: 19  AVAISYD-DKDGAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 76

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 77  PQLYVAVAELLAWLYRLE 94


>gi|283954420|ref|ZP_06371940.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283794037|gb|EFC32786.1| FlhB domain protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 93

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N AP ++A G+   A K+  +A E+ +PI E+  L   +  ++ +   IP
Sbjct: 11  AVALGYQREKNSAPKVLASGKGESAAKIISLAKEYGVPIKEDEDLIE-ILSKLDLGDEIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  YKAVA++   IY  
Sbjct: 70  PNMYKAVAEVFAFIYQM 86


>gi|195953347|ref|YP_002121637.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932959|gb|ACG57659.1| FlhB domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 87

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y + +++AP LVAKG+  IA+K+ + A EH +P+ ++  L  + +  + I   IP
Sbjct: 8   AIALKYERGKDNAPRLVAKGKGYIAQKIIEFAKEHQVPVIQDEKLLSAAY-NLDIYEEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  YKAVA+++  +   K
Sbjct: 67  PELYKAVAKVLVFVEKLK 84


>gi|268678710|ref|YP_003303141.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616741|gb|ACZ11106.1| FlhB domain-containing protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 92

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T+ T  A+AL+Y + +  AP +VA G+  +A  + K+A EH+I I ++  L   L  ++ 
Sbjct: 5   TSKTQKAVALKYDREKQGAPKVVASGKGEVANNIIKLAQEHDIFIKKDADLVE-LLSKIE 63

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
           IN  IPP+ YKAVA++   IY 
Sbjct: 64  INKEIPPMLYKAVAEVFSFIYK 85


>gi|52842789|ref|YP_096588.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629900|gb|AAU28641.1| flagellar protein FlhB [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 112

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  I
Sbjct: 31  VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEI 87

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y AVAQ++  +Y
Sbjct: 88  PKALYIAVAQILAFLY 103


>gi|223039449|ref|ZP_03609737.1| FlhB domain protein [Campylobacter rectus RM3267]
 gi|222879245|gb|EEF14338.1| FlhB domain protein [Campylobacter rectus RM3267]
          Length = 89

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y + +++AP ++A G   +AK +  +A  H+IPI E+  L   +  +V +N 
Sbjct: 7   TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLVE-ILSKVDLNE 65

Query: 333 AIPPVFYKAVAQLIYKIYHK 352
            +PP  YKAVA++   +Y  
Sbjct: 66  EVPPNLYKAVAEIFNFLYRM 85


>gi|157692287|ref|YP_001486749.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
 gi|157681045|gb|ABV62189.1| flagellar biosynthesis protein FlhB [Bacillus pumilus SAFR-032]
          Length = 91

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           + P   A+AL Y + +  AP +VA G   +A  + + A +  +PI E+ +L   L + + 
Sbjct: 4   SKPLRRAVALHYDEEKQKAPKVVATGSGYVADNIIEEAKKSGVPIQEDRNLVE-LMRHLT 62

Query: 330 INSAIPPVFYKAVAQLIYKIYHK 352
           ++  IP   Y  VA++   IY  
Sbjct: 63  LDEEIPEALYDTVAEIFSFIYRL 85


>gi|83589852|ref|YP_429861.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073]
 gi|83572766|gb|ABC19318.1| flagellar biosynthesis [Moorella thermoacetica ATCC 39073]
          Length = 94

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E+ AP +VA G+  IA K+   A E  +PI  +  LA  L   + + S IP
Sbjct: 10  AVALRYNSEEDKAPRVVASGRGAIADKIITAAREAGVPIHRDTHLAEML-AGLDVGSEIP 68

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  IY  
Sbjct: 69  VELYQMVAEILVFIYSL 85


>gi|242309108|ref|ZP_04808263.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT
           98-5489]
 gi|239524149|gb|EEQ64015.1| flagellar basal body protein FlhB [Helicobacter pullorum MIT
           98-5489]
          Length = 92

 Score = 91.8 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+  +L  SL   + I
Sbjct: 4   PPPQKAVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIH-LEI 62

Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
           +  IPP  YKAV ++   +Y 
Sbjct: 63  DEEIPPELYKAVVEVFIWLYK 83


>gi|89098659|ref|ZP_01171541.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911]
 gi|89086621|gb|EAR65740.1| flagellar biosynthesis [Bacillus sp. NRRL B-14911]
          Length = 99

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +   +AP + AKG+ L A+ + + A EHNIPI E+ SL   L  ++ I+  IP
Sbjct: 12  AVALSY-RDGQEAPKVKAKGKGLTAENILEKAKEHNIPIQEDASLVE-LLGKLNIDENIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+AVA++   +Y 
Sbjct: 70  EELYQAVAEIFAFVYK 85


>gi|295689582|ref|YP_003593275.1| type III secretion exporter [Caulobacter segnis ATCC 21756]
 gi|295431485|gb|ADG10657.1| type III secretion exporter [Caulobacter segnis ATCC 21756]
          Length = 87

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL +   +  AP ++A GQ  + +K+ + A EH +PI E+P LA++L   + I+  I
Sbjct: 13  IAVALLHD--DASAPRVLASGQGWVGEKIIETAREHGVPIEEDPVLAQAL-STIEIDEEI 69

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA+++  +  
Sbjct: 70  PDALYRAVAEVLGFLLQ 86


>gi|255322604|ref|ZP_05363749.1| FlhB domain protein [Campylobacter showae RM3277]
 gi|255300512|gb|EET79784.1| FlhB domain protein [Campylobacter showae RM3277]
          Length = 89

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y + +++AP ++A G   +AK +  +A  H+IPI E+  L   L  +V +N 
Sbjct: 7   TKKAVALGYNRQKDNAPKVLATGSGEVAKNIINLAKSHDIPIKEDADLIEVL-SKVDLNE 65

Query: 333 AIPPVFYKAVAQLIYKIYHK 352
            +PP  YKAVA++   +Y  
Sbjct: 66  EVPPNLYKAVAEIFNFLYQM 85


>gi|147676798|ref|YP_001211013.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Pelotomaculum thermopropionicum SI]
 gi|146272895|dbj|BAF58644.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Pelotomaculum thermopropionicum SI]
          Length = 95

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A ALRY   +N APV+VA G+ L AKK+++IA +  +P++++ +LAR+L   + I   I
Sbjct: 8   VAAALRYEAGKNGAPVVVAAGRGLKAKKIKEIAEQAGVPVYQDEALARTLH-DLGIGVEI 66

Query: 335 PPVFYKAVAQLIYKI 349
           PP  Y+AVA+++  +
Sbjct: 67  PPRLYQAVARILVFV 81


>gi|307946460|ref|ZP_07661795.1| type III secretion protein [Roseibium sp. TrichSKD4]
 gi|307770124|gb|EFO29350.1| type III secretion protein [Roseibium sp. TrichSKD4]
          Length = 99

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+ALRY      AP + AKG   +A ++ +IA E  +PI ++P +A +L  Q+ I+  I
Sbjct: 15  VAVALRYDNE--GAPTVTAKGTGSVADRIEEIARESGVPIEQDPMMAEAL-SQIDIDEEI 71

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA LI  +  
Sbjct: 72  PIELYQAVAVLIGFVMR 88


>gi|327441037|dbj|BAK17402.1| flagellar biosynthesis pathway, component FlhB [Solibacillus
           silvestris StLB046]
          Length = 155

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 56/133 (42%)

Query: 8   DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
             KTE  + KK +D+  +G    S++ +    +L    +LLFF       +   L   L 
Sbjct: 16  GEKTEKATPKKRQDSRKKGQVLKSQDVTAAVLLLLSFFFLLFFAPFMYEGMKDFLLQALN 75

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
                +  +   ++ +        + +V+P +++ ++ GIG+   Q   +     +K   
Sbjct: 76  RNMLIETLNAETVMDMYVESIKEMAIIVLPIMVIAIIAGIGANFFQFGLLFTTETLKIDL 135

Query: 128 KRVSLREGIKRIY 140
           K+    +G KR++
Sbjct: 136 KKWIRLKGSKRLF 148


>gi|261885341|ref|ZP_06009380.1| FlhB domain-containing protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 87

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  +++P ++A G+  +A K+ + A +H IPI E+  L   +  ++ IN  IP
Sbjct: 7   AVALGYNKKRDNSPKVLASGKGEMASKIIEEAQKHKIPIKEDSDLVE-ILSKIDINQEIP 65

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAVA++   +Y 
Sbjct: 66  PNLYKAVAEVFSFLYR 81


>gi|78485097|ref|YP_391022.1| flagellar protein FhlB-like protein [Thiomicrospira crunogena
           XCL-2]
 gi|78363383|gb|ABB41348.1| FlhB domain protein [Thiomicrospira crunogena XCL-2]
          Length = 104

 Score = 91.0 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +A+        AP + AKG   +A+++ K+A E+NIPI E+  L + L  QV ++  IP 
Sbjct: 14  VAITLEYDGESAPKVTAKGSGTLAEQIIKVAKENNIPITEDHDLVQ-LLAQVELDQEIPE 72

Query: 337 VFYKAVAQLIYKIYHK 352
           + Y+AV Q++   Y  
Sbjct: 73  LLYEAVVQVLIFAYQL 88


>gi|205373357|ref|ZP_03226161.1| flagellar biosynthesis protein [Bacillus coahuilensis m4-4]
          Length = 94

 Score = 91.0 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY     DAP L+AKG+ L+A+++ + A E+ I + E+P+L   L  Q+ +N  IP
Sbjct: 9   AIALRYDDMSMDAPKLIAKGKGLVAEQIIEKAKENGIQVQEDPNLVEML-SQLNMNETIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA++   +Y 
Sbjct: 68  AELYEVVAEVFAYVYK 83


>gi|326204817|ref|ZP_08194671.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782]
 gi|325985029|gb|EGD45871.1| type III secretion exporter [Clostridium papyrosolvens DSM 2782]
          Length = 98

 Score = 91.0 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + AP +VA G+  IA+++ + A E+N+P++++ +LA++L   + I   IP
Sbjct: 13  AAALQYSPDSDAAPRIVAAGKGQIAERIIQKAQENNVPLYQDTNLAQTL-SSLSIGDEIP 71

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+ VA+++  I
Sbjct: 72  PEIYEVVAEILIFI 85


>gi|168698715|ref|ZP_02730992.1| FlhB domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 89

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++ AP +VAKG+   A+++  +A ++ +P+ E+P+L + L  ++ ++  IP
Sbjct: 9   AVALSYDPAKDRAPKVVAKGKGRTAEQILALARKNAVPVREDPTLVQVL-SRLKVDQEIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+AVA ++  +  
Sbjct: 68  PEVYRAVALILAFLNR 83


>gi|157363588|ref|YP_001470355.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
 gi|157314192|gb|ABV33291.1| flagellar biosynthetic protein FlhB [Thermotoga lettingae TMO]
          Length = 83

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y     DAP ++AKG+  IA+++ K A E  +P+   P L R L++ + +   I
Sbjct: 7   LAVALGYDPDVFDAPFVIAKGKEEIAERIIKQALEAKVPVVSSPELVRKLYR-LEVLEEI 65

Query: 335 PPVFYKAVAQLIYKIYHK 352
           P   Y AVA+++  + + 
Sbjct: 66  PDDLYFAVAEILVFVQNL 83


>gi|304311129|ref|YP_003810727.1| Probably flagellar biosynthesis-related protein [gamma
           proteobacterium HdN1]
 gi|301796862|emb|CBL45074.1| Probably flagellar biosynthesis-related protein [gamma
           proteobacterium HdN1]
          Length = 113

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP + A G N +A+ + +IA EH +PI+E   L  ++  ++ I   IP
Sbjct: 13  AVALTYD--GSRAPFISASGDNELAETILRIAREHGVPIYENKDLV-NILSRLEIGEEIP 69

Query: 336 PVFYKAVAQLIYKIYHKK 353
            + Y+ +A++I  +Y  K
Sbjct: 70  ELLYRTIAEIIAFVYMLK 87


>gi|54295419|ref|YP_127834.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens]
 gi|53755251|emb|CAH16745.1| hypothetical protein lpl2505 [Legionella pneumophila str. Lens]
          Length = 88

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  I
Sbjct: 7   VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVDLNEEI 63

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y AVAQ++  +Y
Sbjct: 64  PKALYIAVAQILAFLY 79


>gi|310658875|ref|YP_003936596.1| hypothetical protein CLOST_1571 [Clostridium sticklandii DSM 519]
 gi|308825653|emb|CBH21691.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 92

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E  AP +V KGQ  +AK++ + A E++IP++++  LA  L   + I+S IP
Sbjct: 11  AVALRYDMNEFIAPKIVGKGQGEVAKRIIEKAKENDIPVYQDEKLAGQL-SAMEIDSFIP 69

Query: 336 PVFYKAVAQLIYKI 349
              Y+AVAQ++  I
Sbjct: 70  EELYEAVAQILAFI 83


>gi|218778848|ref|YP_002430166.1| flagellar biosynthetic protein FlhB [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760232|gb|ACL02698.1| FlhB domain-containing protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 90

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    ++AP + A G+ +IA+K+  +A +H +P+ E+P L   L  ++ +N  IP
Sbjct: 8   AVALKYNALADNAPRVTATGKGIIAEKIIDLARKHGVPVQEDPDLVEVL-ARLDLNEEIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  VA+L+  +Y 
Sbjct: 67  AELYVVVAELLSFVYK 82


>gi|78224352|ref|YP_386099.1| FlhB domain-containing protein [Geobacter metallireducens GS-15]
 gi|78195607|gb|ABB33374.1| FlhB domain protein, putative [Geobacter metallireducens GS-15]
          Length = 94

 Score = 90.6 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  AP +VAKG  + A+ +   A E  + + E P+L   L  QV I+  IP
Sbjct: 10  AVALSYREGQY-APQVVAKGHGVTAEAIIACAREAGVFVHESPALVSQLM-QVDIDHYIP 67

Query: 336 PVFYKAVAQLIYKIY 350
           P  Y+AVA+L+  +Y
Sbjct: 68  PELYRAVAELLAWLY 82


>gi|291613084|ref|YP_003523241.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1]
 gi|291583196|gb|ADE10854.1| type III secretion exporter [Sideroxydans lithotrophicus ES-1]
          Length = 113

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL Y +  + AP +VA G+ LIA+ + + A EH + + E   L   L  QV ++  
Sbjct: 11  QLAVALAY-RNGDAAPKVVASGRGLIAQAIIERAKEHGVYVHESEELVGMLM-QVELDQH 68

Query: 334 IPPVFYKAVAQLIYKIYHKK 353
           IPP  Y AVA+L+  +Y  +
Sbjct: 69  IPPQLYLAVAELLAWLYRLE 88


>gi|220928169|ref|YP_002505078.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10]
 gi|219998497|gb|ACL75098.1| flagellar biosynthesis protein [Clostridium cellulolyticum H10]
          Length = 98

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + AP +VA G+  IA+++ + A E N+P++++ +LA++L   + I   IP
Sbjct: 13  AAALQYSPDTDSAPKIVAAGKGQIAERIIQKAQETNVPLYQDSNLAQTL-SSLCIGDEIP 71

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+ VA+++  I
Sbjct: 72  PEIYEVVAEILIFI 85


>gi|307826053|ref|ZP_07656266.1| type III secretion exporter [Methylobacter tundripaludum SV96]
 gi|307732892|gb|EFO03756.1| type III secretion exporter [Methylobacter tundripaludum SV96]
          Length = 94

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL+Y     +AP + AKG  L A+++ +IA  H IP+  EP LAR +  Q+P+   I
Sbjct: 10  IAIALKYDGK--NAPKVTAKGSGLTAEQILQIAELHGIPLQTEPELAR-ILAQIPLGDEI 66

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y AVA++I   Y
Sbjct: 67  PNELYVAVAEIIAFAY 82


>gi|39995477|ref|NP_951428.1| FlhB domain-containing protein [Geobacter sulfurreducens PCA]
 gi|39982240|gb|AAR33701.1| FlhB domain protein, putative [Geobacter sulfurreducens PCA]
 gi|298504477|gb|ADI83200.1| FlhB cytoplasmic domain-related protein [Geobacter sulfurreducens
           KN400]
          Length = 90

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  + AP +VAKG  + A+ +   A E  + + + P L R L  QV I+S IP
Sbjct: 10  AVALSY-REGHYAPQVVAKGYGVTAEAIIACAREAGVYVHQSPELVRQLI-QVDIDSCIP 67

Query: 336 PVFYKAVAQLIYKIY 350
              Y+AVA+L+  +Y
Sbjct: 68  ADLYRAVAELLAWLY 82


>gi|187478213|ref|YP_786237.1| flagellar biosynthesis protein [Bordetella avium 197N]
 gi|115422799|emb|CAJ49327.1| putative flagellar biosynthesis protein [Bordetella avium 197N]
          Length = 97

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y    + AP +VAKG   +A+ + + A EH++ + E P L   L  QV ++S IP
Sbjct: 12  AVAISYD-EADGAPRVVAKGYGQMAETIVRTAREHDLYVHESPELV-GLLMQVDLDSHIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y AVA+L+  +Y 
Sbjct: 70  PALYTAVAELLAWLYR 85


>gi|146282896|ref|YP_001173049.1| FlhB domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145571101|gb|ABP80207.1| FlhB domain protein [Pseudomonas stutzeri A1501]
 gi|327481236|gb|AEA84546.1| FlhB domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 110

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +AP L AKG + +A+ +  IA EH +PI+E   L   L  ++ +   IP
Sbjct: 9   AIALSYD--GVNAPSLSAKGDDELAEAILAIAREHEVPIYENADLV-KLLARLELGDEIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   ++ K
Sbjct: 66  EALYRTIAEIIAFAWYLK 83


>gi|15615036|ref|NP_243339.1| flagellar biosynthesis [Bacillus halodurans C-125]
 gi|10175093|dbj|BAB06192.1| flagellar biosynthesis [Bacillus halodurans C-125]
          Length = 92

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+RY + +  AP ++ KG+ L+A ++ K A E  +PI ++PSL   L  Q+ IN  IP
Sbjct: 10  AVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVE-LLGQLEINETIP 68

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+ VA+L   IY 
Sbjct: 69  EELYEVVAELFAFIYQ 84


>gi|167950811|ref|ZP_02537885.1| FlhB domain protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 94

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y    ++AP L AKG+  +A+++  IA EHNIP+ ++  L+ +L  Q+P+   I
Sbjct: 11  LAIALNYD--GSNAPRLTAKGRGAVAEQILSIAKEHNIPLHQDTELS-ALLAQIPLGDEI 67

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y+AVA++I   Y
Sbjct: 68  PEALYRAVAEVIAFAY 83


>gi|70729068|ref|YP_258804.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68343367|gb|AAY90973.1| FlhB domain protein [Pseudomonas fluorescens Pf-5]
          Length = 109

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           + P   A+AL+Y      AP L AKG + +A+ + KIA ++ +PI+E   L   L  ++ 
Sbjct: 4   SPPPRQAIALKYD--GQQAPTLTAKGDDELAEAILKIARDYEVPIYENAELV-KLLARLE 60

Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353
           +  +IPP  Y+ +A++I   ++ K
Sbjct: 61  LGESIPPELYRTIAEIIAFAWNLK 84


>gi|34499326|ref|NP_903541.1| flagellar biosynthesis-like protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105177|gb|AAQ61533.1| probable flagellar biosynthesis-related protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 112

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  +P +VAKG   +A+++   A +  + + + P L  SL  QV ++  IP
Sbjct: 13  AVALSYKEGQ-RSPRVVAKGYGQMAQRIIDCAQDAGVFVHDSPELV-SLLMQVDLDKHIP 70

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+AVA+++  IY+ +
Sbjct: 71  PELYRAVAEILAFIYYLE 88


>gi|312959804|ref|ZP_07774320.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
 gi|311285970|gb|EFQ64535.1| flagellar biosynthetic protein FlhB [Pseudomonas fluorescens WH6]
          Length = 109

 Score = 89.5 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T  +  A+AL+Y      AP L AKG + +A+ + K+A E+ +PI+E   L   L  ++ 
Sbjct: 4   TESSRQAIALKYD--GQQAPTLTAKGDDALAEAILKLARENEVPIYENAELV-KLLARME 60

Query: 330 INSAIPPVFYKAVAQLIYKIYHKK 353
           +  +IP   Y+ +A++I   +  K
Sbjct: 61  LGDSIPEELYRTIAEIIAFAWTLK 84


>gi|297530618|ref|YP_003671893.1| type III secretion exporter [Geobacillus sp. C56-T3]
 gi|297253870|gb|ADI27316.1| type III secretion exporter [Geobacillus sp. C56-T3]
          Length = 95

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP++ AKG   +A+ +   A +H +PI ++P+L   L  +V IN  IP
Sbjct: 8   AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINETIP 66

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  VA+L   +Y  
Sbjct: 67  EELYALVAELFAFLYQL 83


>gi|89894622|ref|YP_518109.1| hypothetical protein DSY1876 [Desulfitobacterium hafniense Y51]
 gi|219669058|ref|YP_002459493.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2]
 gi|89334070|dbj|BAE83665.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539318|gb|ACL21057.1| FlhB domain-containing protein [Desulfitobacterium hafniense DCB-2]
          Length = 88

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y Q+   AP +VAKG   +A+K+ + A E+ IPI ++  L  +L + V     IP
Sbjct: 5   AAALAYDQS--GAPKVVAKGTGEVARKIIEQAIEYGIPIQKDEVLVETLMR-VEYGEEIP 61

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+ VA+L+  +Y  
Sbjct: 62  PQLYQVVAELLAFVYRL 78


>gi|115525542|ref|YP_782453.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
 gi|115519489|gb|ABJ07473.1| type III secretion protein [Rhodopseudomonas palustris BisA53]
          Length = 88

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y Q    AP++VAKG+  I  K+ ++A  H++PI E   LA +L  +V +   I
Sbjct: 9   LAIALHYDQ--LGAPLVVAKGKGAIGAKIIEVAKAHDVPIEENEVLAGAL-SKVELGEEI 65

Query: 335 PPVFYKAVAQLIYKIYHK 352
           P   YKAVA+++  +   
Sbjct: 66  PQELYKAVAEVLVFVLRL 83


>gi|325982832|ref|YP_004295234.1| type III secretion exporter [Nitrosomonas sp. AL212]
 gi|325532351|gb|ADZ27072.1| type III secretion exporter [Nitrosomonas sp. AL212]
          Length = 109

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  AP ++AKG+ LIA+++ + A E NI + E   L  +L  QV ++  IP
Sbjct: 10  AVALAYREGQI-APKVIAKGRGLIAQEIIRRAKEANIYVHESSELV-ALLMQVNLDDRIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 68  PQLYVAVAELLAWLYRLE 85


>gi|104782789|ref|YP_609287.1| hypothetical protein PSEEN3784 [Pseudomonas entomophila L48]
 gi|95111776|emb|CAK16500.1| conserved hypothetical protein; FlhB domain protein [Pseudomonas
           entomophila L48]
          Length = 114

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALSYD--GQQAPTLSAKGDDELAEAILAIAREHEVPIYENAELVR-LLARLELGEQIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A++I   +  +
Sbjct: 66  EALYLTIAEIIAFAWQLR 83


>gi|54298571|ref|YP_124940.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris]
 gi|148358686|ref|YP_001249893.1| flagellar protein FlhB [Legionella pneumophila str. Corby]
 gi|296108224|ref|YP_003619925.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
 gi|53752356|emb|CAH13788.1| hypothetical protein lpp2635 [Legionella pneumophila str. Paris]
 gi|148280459|gb|ABQ54547.1| flagellar protein FlhB [Legionella pneumophila str. Corby]
 gi|295650126|gb|ADG25973.1| flagellar biosynthesis protein [Legionella pneumophila 2300/99
           Alcoy]
          Length = 88

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  I
Sbjct: 7   VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVRLNEEI 63

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y AVAQ++  +Y
Sbjct: 64  PKALYIAVAQILAFLY 79


>gi|333008534|gb|EGK28003.1| surface presentation of antigens protein spaS domain protein
           [Shigella flexneri K-218]
 gi|333017441|gb|EGK36757.1| surface presentation of antigens protein spaS domain protein
           [Shigella flexneri K-227]
 gi|333020371|gb|EGK39635.1| surface presentation of antigens protein spaS domain protein
           [Shigella flexneri K-304]
          Length = 108

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%)

Query: 249 IARSRIRHKMMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAY 308
           +    +  +       + +++ NPTH A+ + +      AP +     N  A  +RK A 
Sbjct: 1   MHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYAN 60

Query: 309 EHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           E  IP   +  LAR L+K     S +       V +LI  +  
Sbjct: 61  EVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVWLEQ 103


>gi|330960251|gb|EGH60511.1| FlhB domain-containing protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 107

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 269 ITNPTH---YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +T P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L 
Sbjct: 1   MTPPDHSPRQAIALSYD--GQSAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|229589274|ref|YP_002871393.1| hypothetical protein PFLU1756 [Pseudomonas fluorescens SBW25]
 gi|229361140|emb|CAY48003.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 109

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A+AL+Y      AP L A+G + +A+ + K+A E+ +PI+E   L   L  ++ +
Sbjct: 5   TPPRQAIALKYD--GQQAPTLTARGDDALAEAILKLARENEVPIYENAELV-KLLARMEL 61

Query: 331 NSAIPPVFYKAVAQLIYKIYHKK 353
             +IP   Y+ +A++I   +  K
Sbjct: 62  GDSIPEELYRTIAEIIAFAWTLK 84


>gi|330808246|ref|YP_004352708.1| FlhB domain-containing protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376354|gb|AEA67704.1| Conserved hypothetical protein, FlhB domain-containing protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 109

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + AP L AKG   +A+++ +IA E  +PI+E   L   L  ++ +  +IP
Sbjct: 10  AIALKYD--GHHAPTLTAKGDEALAEEILRIARESEVPIYENAELV-KLLARMELGDSIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   ++ K
Sbjct: 67  EELYRTIAEIIAFAWNLK 84


>gi|74317614|ref|YP_315354.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259]
 gi|74057109|gb|AAZ97549.1| flagellar protein FhlB [Thiobacillus denitrificans ATCC 25259]
          Length = 124

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PT  A A    +  + AP +VAKG+ ++A  + + A    + + E   L  +L  Q+ ++
Sbjct: 32  PTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHESREL-LALLMQIDLD 90

Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
           S IPP  Y AVA+L+  +YH +
Sbjct: 91  SHIPPQLYIAVAELLAWLYHLE 112


>gi|325271963|ref|ZP_08138414.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51]
 gi|324102911|gb|EGC00307.1| hypothetical protein G1E_03827 [Pseudomonas sp. TJI-51]
          Length = 117

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + IA+ +  +A EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALSYD--GQQAPSLTAKGDDSIAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A++I   +  +
Sbjct: 66  EALYLTIAEIIAFAWQLR 83


>gi|313200541|ref|YP_004039199.1| flagellar biosynthetic protein [Methylovorus sp. MP688]
 gi|312439857|gb|ADQ83963.1| putative flagellar biosynthetic protein [Methylovorus sp. MP688]
          Length = 101

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y    + AP +VAKG+ L+A+++   A EH++ + E   L  SL  Q+ ++ 
Sbjct: 11  TQQAIALAYETG-DFAPRVVAKGRGLVAEQIIARAREHDVFVHESKELV-SLLMQIDLDD 68

Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
            IPP  Y A+A+++  +Y  +
Sbjct: 69  HIPPKLYMAIAEILAWLYRLE 89


>gi|187935380|ref|YP_001887350.1| flagella-associated protein [Clostridium botulinum B str. Eklund
           17B]
 gi|188588297|ref|YP_001922288.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251780672|ref|ZP_04823592.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|187723533|gb|ACD24754.1| flagella-associated protein [Clostridium botulinum B str. Eklund
           17B]
 gi|188498578|gb|ACD51714.1| flagella-associated protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243084987|gb|EES50877.1| flagella-associated protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 86

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y     +AP++ A G   IA K+ + A E+ +PI     LA +L   V +   IP
Sbjct: 7   AAALKYELNNTEAPMIAASGMGHIADKIIEKAQENEVPIVYNKELA-NLLCNVDVGDEIP 65

Query: 336 PVFYKAVAQLIYKI 349
              Y+AVA +I  +
Sbjct: 66  TELYEAVAHVIAFV 79


>gi|296273468|ref|YP_003656099.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299]
 gi|296097642|gb|ADG93592.1| type III secretion exporter [Arcobacter nitrofigilis DSM 7299]
          Length = 91

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL+Y   ++ AP +VAKG   +A  + KIA E+NIPI ++  L   L  ++ +N  IP  
Sbjct: 12  ALKYNMQDDTAPRVVAKGIGELASNIIKIAKENNIPIKKDEDLVE-LLTKLDVNQQIPNN 70

Query: 338 FYKAVAQLIYKIYHK 352
            YKAVA++   IY  
Sbjct: 71  LYKAVAEVFAFIYDL 85


>gi|163782344|ref|ZP_02177342.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882377|gb|EDP75883.1| flagellar biosynthesis [Hydrogenivirga sp. 128-5-R1-1]
          Length = 90

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+RY + ++ AP++VAKG   +A+++ ++A +  +P+ E+  L  +L K + +   IP
Sbjct: 8   AVAIRYTEGKDRAPIVVAKGAGELAERIIELAKKEGVPVLEDRHLIEALLK-IEVFEEIP 66

Query: 336 PVFYKAVAQLIYKI 349
           PV Y+AVA+++  +
Sbjct: 67  PVLYEAVAKVLVFV 80


>gi|317406222|gb|EFV86468.1| flagellar protein [Achromobacter xylosoxidans C54]
          Length = 107

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   ++ AP +VAKG   +A  + + A E+ + + E   L   L  QV +++ IP
Sbjct: 18  AVAISYD-DKDAAPRVVAKGYGQLADTIVRAAEENGLYVHESRELV-GLLMQVDLDAHIP 75

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 76  PQLYVAVAELLAWLYRLE 93


>gi|303241146|ref|ZP_07327654.1| type III secretion exporter [Acetivibrio cellulolyticus CD2]
 gi|302591273|gb|EFL61013.1| type III secretion exporter [Acetivibrio cellulolyticus CD2]
          Length = 98

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL+Y    N AP ++  G   IA+K+ + A E++IPI++   LA +L     I   IPP 
Sbjct: 13  ALKYSPQSNRAPEIIGLGSGEIAEKIIEKAKENDIPIYKNDELASTL-SHFKIGDEIPPE 71

Query: 338 FYKAVAQLIYKI 349
            Y+ VA+++  +
Sbjct: 72  LYEVVAEILVFV 83


>gi|302387748|ref|YP_003823570.1| type III secretion exporter [Clostridium saccharolyticum WM1]
 gi|302198376|gb|ADL05947.1| type III secretion exporter [Clostridium saccharolyticum WM1]
          Length = 115

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +N APV+VA G   +A+K+ + A E+ +P++E+ SLA ++  Q+ + S +P
Sbjct: 12  AVALKYDDAKNSAPVIVASGMGYMAEKIIETANENGVPVYEDNSLA-TILTQLELGSQVP 70

Query: 336 PVFYKAVAQLIYKIY 350
              Y+A+ ++   +Y
Sbjct: 71  EELYQAIVEI--YLY 83


>gi|307611462|emb|CBX01131.1| hypothetical protein LPW_28301 [Legionella pneumophila 130b]
          Length = 88

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+ALRY    N  P + AKG+ L A+++   A EH IP+ + P L  +L  QV +N  I
Sbjct: 7   VAVALRYD--GNSPPKVTAKGEGLFAQQIINTAKEHGIPLEQNPELT-ALLSQVHLNEEI 63

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y AVAQ++  +Y
Sbjct: 64  PKALYIAVAQILAFLY 79


>gi|307721269|ref|YP_003892409.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979362|gb|ADN09397.1| FlhB domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 85

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +N APV+ AKG+   A+K+ KIA EH +PI ++  L   L  +V +N  +P
Sbjct: 5   AVALTYDKEKNRAPVISAKGKGTTAQKIIKIAKEHGVPIKKDEDLIE-LLSKVELNKEVP 63

Query: 336 PVFYKAVAQLIYKIY 350
           P  YKA+A++   IY
Sbjct: 64  PQMYKAIAEVFSFIY 78


>gi|254501917|ref|ZP_05114068.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11]
 gi|222437988|gb|EEE44667.1| hypothetical protein SADFL11_1955 [Labrenzia alexandrii DFL-11]
          Length = 97

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
           T P   A+AL Y      APV+ AKG    AK++ +IA E  +PI + P +A +L  Q+ 
Sbjct: 5   TKPEKIAVALEYEDG--GAPVVSAKGTGSAAKRIEEIAREAGVPIEQNPMMAEAL-SQIE 61

Query: 330 INSAIPPVFYKAVAQLIYKIYH 351
           ++  IP   Y+AVA L+  I  
Sbjct: 62  VDHEIPMELYQAVAVLVGFIMR 83


>gi|224419116|ref|ZP_03657122.1| hypothetical protein HcanM9_07572 [Helicobacter canadensis MIT
           98-5491]
 gi|253828052|ref|ZP_04870937.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142623|ref|ZP_07804816.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT
           98-5491]
 gi|253511458|gb|EES90117.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131654|gb|EFR49271.1| flagellar basal body protein FlhB [Helicobacter canadensis MIT
           98-5491]
          Length = 93

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q ++ AP ++AKG+ LIA+K+ + A E++IP+F+  +L  SL   + I+  IP
Sbjct: 9   AVALAYEQNKHRAPKVLAKGEGLIAQKIIEKAKEYDIPLFQSKALVDSLIH-LEIDEEIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAV ++   +Y 
Sbjct: 68  PDLYKAVVEVFIWLYK 83


>gi|154250425|ref|YP_001411250.1| flagellar biosynthetic protein (FlhB)-like protein
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154361|gb|ABS61593.1| flagellar biosynthetic protein (FlhB)-like protein
           [Fervidobacterium nodosum Rt17-B1]
          Length = 96

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL+Y   ++ AP +VAKG+  +A+ + K A E N+PI + P L   LF+ + I   I
Sbjct: 17  LAVALKYQMGKDFAPFVVAKGRCQLAEAIIKKAEESNVPIVKSPDLVEELFR-LDILEMI 75

Query: 335 PPVFYKAVAQLIYKI 349
           P   Y AVA+++  +
Sbjct: 76  PSKLYVAVAEVLAFV 90


>gi|313682765|ref|YP_004060503.1| type iii secretion exporter [Sulfuricurvum kujiense DSM 16994]
 gi|313155625|gb|ADR34303.1| type III secretion exporter [Sulfuricurvum kujiense DSM 16994]
          Length = 83

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY +T+ DAP +VAKG+   A+ + KIA  HN+PI ++  L   L  +V ++  IP
Sbjct: 4   AVALRYDRTKEDAPRVVAKGKGASAENIIKIAELHNLPIHKDEDLVE-LLSKVELDKEIP 62

Query: 336 PVFYKAVAQLIYKIYH 351
              Y AV ++   IY 
Sbjct: 63  EKLYVAVVEVFGFIYK 78


>gi|33596160|ref|NP_883803.1| putative flagellar protein [Bordetella parapertussis 12822]
 gi|33601568|ref|NP_889128.1| putative flagellar protein [Bordetella bronchiseptica RB50]
 gi|33573163|emb|CAE36815.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33576004|emb|CAE33084.1| putative flagellar protein [Bordetella bronchiseptica RB50]
          Length = 104

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y   E  AP +VAKG   +A  + + A EH + + E   L   L  QV +++ I
Sbjct: 16  VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHI 73

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y AVA+L+  +Y  +
Sbjct: 74  PPQLYTAVAELLAWLYRLE 92


>gi|149928166|ref|ZP_01916412.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
 gi|149823151|gb|EDM82389.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
          Length = 95

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y+   + AP +VAKGQ LIA+++ + A E  + + E   L  SL   V ++  IP
Sbjct: 10  AVALAYL-EHSGAPKVVAKGQGLIAEQIIQKAKESGVFVHESRELV-SLLMNVDLDQQIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+A+A+L+  +Y 
Sbjct: 68  PGLYQAIAELLAWVYQ 83


>gi|325294769|ref|YP_004281283.1| type III secretion exporter [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065217|gb|ADY73224.1| type III secretion exporter [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 88

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L+Y + +++AP +VAKG+ ++A+++ ++A +HNIPI E+  L   L K + I   IP
Sbjct: 5   AVVLKYNKAKDNAPKVVAKGEGILAERILELAQKHNIPIVEDKELVSFLLK-LNIGEEIP 63

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YK +A+++   Y+
Sbjct: 64  PTLYKIIAKILSYAYN 79


>gi|56419742|ref|YP_147060.1| hypothetical protein GK1207 [Geobacillus kaustophilus HTA426]
 gi|56379584|dbj|BAD75492.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 95

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP++ AKG   +A+ +   A +H +PI ++P+L   L  +V IN  IP
Sbjct: 8   AVALSYDAALDAAPIVKAKGVGKVAEAIIAAARQHGVPIRQDPTLVE-LLGKVEINEMIP 66

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  VA+L   +Y  
Sbjct: 67  EELYALVAELFAFLYQL 83


>gi|302878303|ref|YP_003846867.1| type III secretion exporter [Gallionella capsiferriformans ES-2]
 gi|302581092|gb|ADL55103.1| type III secretion exporter [Gallionella capsiferriformans ES-2]
          Length = 97

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y QT + AP +VA+G+ LIA+ + + A ++ + + E   L   L  QV ++  IP
Sbjct: 9   AVALAYGQT-SGAPKVVARGRGLIAQAIIERAKQNGVYVHESADLV-GLLMQVELDEQIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 67  PQLYLAVAELLAWLYRLE 84


>gi|57505499|ref|ZP_00371427.1| FlhB domain protein [Campylobacter upsaliensis RM3195]
 gi|315638835|ref|ZP_07894007.1| FlhB domain protein [Campylobacter upsaliensis JV21]
 gi|57016324|gb|EAL53110.1| FlhB domain protein [Campylobacter upsaliensis RM3195]
 gi|315481053|gb|EFU71685.1| FlhB domain protein [Campylobacter upsaliensis JV21]
          Length = 96

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTE-NDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+AL Y + +   AP ++A G+   A K+  +A EH +PI E+  L   +  ++ +   I
Sbjct: 11  AVALGYQREKKESAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIE-ILSKLDLGDEI 69

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  YKAVA++   IY  
Sbjct: 70  PPNMYKAVAEVFAFIYQM 87


>gi|170722818|ref|YP_001750506.1| hypothetical protein PputW619_3655 [Pseudomonas putida W619]
 gi|169760821|gb|ACA74137.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 114

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  +A EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALSYD--GQQAPTLSAKGDDELAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A++I   +  +
Sbjct: 66  EALYLTIAEIIAFAWQLR 83


>gi|119899000|ref|YP_934213.1| flagellar related protein [Azoarcus sp. BH72]
 gi|119671413|emb|CAL95326.1| conserved hypothetical flagellar related protein [Azoarcus sp.
           BH72]
          Length = 125

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL Y   E  AP +VAKG+ LIA+++ + A +  I + +   L  +L  QV ++
Sbjct: 13  PRGEAVALTYASGEA-APRVVAKGRGLIAQEIIERARDAGIYVHQSRELV-ALLMQVDLD 70

Query: 332 SAIPPVFYKAVAQLIYKIYH 351
           S IPP  Y  VA+L+  +Y 
Sbjct: 71  SHIPPQLYVVVAELLAWLYR 90


>gi|329915167|ref|ZP_08276222.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544973|gb|EGF30311.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 97

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           +P   A+AL Y Q+ + AP +VAKG+ LIA ++ + A EH + + E   L  +L  QV +
Sbjct: 6   SPLKNAVALAY-QSGDAAPKIVAKGRGLIATQIIERAKEHGVFVHESKELV-ALLMQVDL 63

Query: 331 NSAIPPVFYKAVAQLIYKIYH 351
           +  IPP  Y+A+A+L+  +YH
Sbjct: 64  DGQIPPALYRAIAELLAWLYH 84


>gi|225569990|ref|ZP_03779015.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM
           15053]
 gi|225161460|gb|EEG74079.1| hypothetical protein CLOHYLEM_06085 [Clostridium hylemonae DSM
           15053]
          Length = 117

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + +  +PV+VA G   +A+K+ + A +  +P++E+ SLA +L  Q+ + S IP
Sbjct: 12  AVALTYDEDKQASPVIVASGMGYLAEKIVETAEKSGVPVYEDNSLA-TLLTQLDLGSEIP 70

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+A+  +     + K
Sbjct: 71  EELYQAIVDIYIYFLNYK 88


>gi|311105963|ref|YP_003978816.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8]
 gi|310760652|gb|ADP16101.1| flagellar biosynthesis protein [Achromobacter xylosoxidans A8]
          Length = 105

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   ++ AP +VAKG   +A  + + A E+ + + E   L   L  QV +++ IP
Sbjct: 19  AVAISYE-DKDGAPRVVAKGYGQLADTIVRAAQENGLYVHESRELV-GLLMQVDLDAHIP 76

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 77  PQLYVAVAELLAWLYRLE 94


>gi|148546777|ref|YP_001266879.1| flagellar protein FhlB-like protein [Pseudomonas putida F1]
 gi|148510835|gb|ABQ77695.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Pseudomonas putida F1]
          Length = 112

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP L AKG   +A+ +  +A EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALNYD--GHQAPTLTAKGDEDLAEAILALAREHEVPIYENADLVR-LLARLELGDQIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A++I   +  +
Sbjct: 66  EALYLTIAEIIAFAWQLR 83


>gi|194292856|ref|YP_002008763.1| flagellar protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226760|emb|CAQ72711.1| putative flagellar protein [Cupriavidus taiwanensis LMG 19424]
          Length = 96

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y  + + AP +VAKG  ++A+ +   A E  + + + P+L  +L  QV ++S IP
Sbjct: 11  AVALSYQPS-DKAPRIVAKGYGVVAEAIIARAKEAGVYVHDSPTLV-NLLMQVDLDSQIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 69  PQLYVAVAELLAWLYQLE 86


>gi|212639580|ref|YP_002316100.1| hypothetical protein Aflv_1754 [Anoxybacillus flavithermus WK1]
 gi|212561060|gb|ACJ34115.1| Uncharacterized protein containing cytoplasmic domain of flagellar
           protein FhlB [Anoxybacillus flavithermus WK1]
          Length = 87

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++ APV+VAKG+  +A ++ + A ++++PI+E+ +LA ++  Q+ +N  IP
Sbjct: 6   AVALSYD-EQHIAPVVVAKGEGAVADRIIERAKQYDVPIYEDETLA-TMLGQLQLNETIP 63

Query: 336 PVFYKAVAQLIYKIYH 351
              YK VA++   IY 
Sbjct: 64  EELYKVVAEVFAFIYQ 79


>gi|33592505|ref|NP_880149.1| putative flagellar protein [Bordetella pertussis Tohama I]
 gi|33572151|emb|CAE41695.1| putative flagellar protein [Bordetella pertussis Tohama I]
 gi|332381923|gb|AEE66770.1| putative flagellar protein [Bordetella pertussis CS]
          Length = 108

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y   E  AP +VAKG   +A  + + A EH + + E   L   L  QV +++ I
Sbjct: 20  VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHI 77

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y AVA+L+  +Y  +
Sbjct: 78  PPQLYTAVAELLAWLYRLE 96


>gi|125973277|ref|YP_001037187.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405]
 gi|256003757|ref|ZP_05428745.1| FlhB domain protein [Clostridium thermocellum DSM 2360]
 gi|281417480|ref|ZP_06248500.1| type III secretion exporter [Clostridium thermocellum JW20]
 gi|125713502|gb|ABN51994.1| flagellar biosynthesis [Clostridium thermocellum ATCC 27405]
 gi|255992318|gb|EEU02412.1| FlhB domain protein [Clostridium thermocellum DSM 2360]
 gi|281408882|gb|EFB39140.1| type III secretion exporter [Clostridium thermocellum JW20]
 gi|316940491|gb|ADU74525.1| type III secretion exporter [Clostridium thermocellum DSM 1313]
          Length = 94

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           AL+Y   EN+AP ++  G+  IA+K+ + A E+NIPI+E   LA +L   + I   IPP 
Sbjct: 12  ALKYSPEENNAPQIIGLGKGEIAEKILEKAKENNIPIYENEELAAAL-NAMNIGDEIPPE 70

Query: 338 FYKAVAQLIYKI 349
            Y  VAQ++  +
Sbjct: 71  LYDIVAQILVFV 82


>gi|120554879|ref|YP_959230.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Marinobacter aquaeolei VT8]
 gi|120324728|gb|ABM19043.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter aquaeolei VT8]
          Length = 106

 Score = 88.3 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y      APV+ A G   +A+++ +IA ++N+P++E   LA  +  ++ +N  IP
Sbjct: 12  AVALKYDGE--RAPVISATGTWELAEEIIRIARDNNVPLYENAELA-GILARLSLNEEIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A+++   +H +
Sbjct: 69  EELYRVIAEILAFAFHIR 86


>gi|237653555|ref|YP_002889869.1| flagellar related protein [Thauera sp. MZ1T]
 gi|237624802|gb|ACR01492.1| flagellar related protein [Thauera sp. MZ1T]
          Length = 114

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP +VAKG+ ++A+++ + A E  + + E P L  +L  QV +++ IP
Sbjct: 12  AVALAYTAGEA-APRVVAKGKGVVAREILERAREAGVFVHESPELV-ALLMQVDLDARIP 69

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y AVA+L+  +Y  +
Sbjct: 70  PQLYVAVAELLAWLYRLE 87


>gi|323956512|gb|EGB52254.1| flagellar biosynthetic protein FlhB [Escherichia coli H263]
          Length = 115

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           MS  D  D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F        ++ 
Sbjct: 1   MS--DESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSG 58

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI 115
            L   L       + D + I+  +  L   A   ++P +   ++  I S ++   
Sbjct: 59  MLSAGL-HFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLVAIISPVMLGG 112


>gi|313497828|gb|ADR59194.1| Flagellar protein FhlB-like protein [Pseudomonas putida BIRD-1]
          Length = 112

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP L AKG   +A+ +  +A EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALNYD--GHQAPTLTAKGDEELAEAILALAREHEVPIYENAELVR-LLARLELGDQIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A++I   +H +
Sbjct: 66  EALYLTIAEIIAFAWHLR 83


>gi|332284044|ref|YP_004415955.1| putative flagellar protein [Pusillimonas sp. T7-7]
 gi|330427997|gb|AEC19331.1| putative flagellar protein [Pusillimonas sp. T7-7]
          Length = 99

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y    + AP +VAKG   +A+ + + A EH + + E P L   L  QV +++ IP
Sbjct: 15  AVAVTYD-KHDAAPRVVAKGYGTVAENIIRSAKEHGLHVHESPELV-GLLMQVDLDAHIP 72

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y A+A+L+  +Y  +
Sbjct: 73  PELYLAIAELLAWLYALE 90


>gi|126664979|ref|ZP_01735962.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter sp. ELB17]
 gi|126630349|gb|EBA00964.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Marinobacter sp. ELB17]
          Length = 96

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y      AP + A G + +A ++ +IA EH +P++E   LA +L  ++ +N  IP
Sbjct: 13  AVALKYDGE--RAPTISAVGNHELADEIIRIAREHGVPLYENAELASTL-ARLSLNDEIP 69

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ VA+++   +H +
Sbjct: 70  EQLYQLVAEILAFAFHIR 87


>gi|253998466|ref|YP_003050529.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4]
 gi|253985145|gb|ACT50002.1| putative flagellar biosynthetic protein [Methylovorus sp. SIP3-4]
          Length = 101

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y    + AP +VAKG+ L+A+++   A EH++ + E   L  SL  Q+ ++ 
Sbjct: 11  TQQAIALAYETG-DFAPRVVAKGRGLVAEQIIARAREHDVFLHESKELV-SLLMQIDLDD 68

Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
            IPP  Y A+A+++  +Y  +
Sbjct: 69  HIPPKLYMAIAEILAWLYRLE 89


>gi|26991019|ref|NP_746444.1| FlhB domain-containing protein [Pseudomonas putida KT2440]
 gi|24986048|gb|AAN69908.1|AE016629_10 FlhB domain protein [Pseudomonas putida KT2440]
          Length = 112

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP L AKG   +A+ +  +A EH +PI+E   L R L  ++ +   IP
Sbjct: 9   AIALNYD--GHQAPTLTAKGDEDLAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A++I   +H +
Sbjct: 66  EALYLTIAEIIAFAWHLR 83


>gi|188996729|ref|YP_001930980.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931796|gb|ACD66426.1| FlhB domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 87

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY +  + AP +VAKG+ +IA+++ ++A +H + + E+P+L   L   + +   IP
Sbjct: 8   AVALRYERYRDSAPKVVAKGKGIIAERIIEVAKQHGVYLKEDPTLVEVL-SGLELYEEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              YK +A++   IY  K
Sbjct: 67  EELYKVIAEIFVLIYQAK 84


>gi|118587806|ref|ZP_01545216.1| flhB-related protein [Stappia aggregata IAM 12614]
 gi|118439428|gb|EAV46059.1| flhB-related protein [Stappia aggregata IAM 12614]
          Length = 94

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL+Y      APV+ AKG   +A+++ ++A E  +PI + P +A +L  Q+ ++  I
Sbjct: 11  LAVALQYESE--GAPVVTAKGTGSMAEQIERLAREAGVPIEQNPMMAEAL-SQIEVDQEI 67

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   Y+AVA LI  I  
Sbjct: 68  PIELYQAVAVLIGFIMR 84


>gi|302188650|ref|ZP_07265323.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
           642]
          Length = 107

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +T P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L 
Sbjct: 1   MTLPDHTPRQAIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|28870794|ref|NP_793413.1| FlhB domain-containing protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968921|ref|ZP_03397061.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301385357|ref|ZP_07233775.1| FlhB domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061231|ref|ZP_07252772.1| FlhB domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302133130|ref|ZP_07259120.1| FlhB domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28854043|gb|AAO57108.1| FlhB domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926220|gb|EEB59775.1| FlhB domain protein [Pseudomonas syringae pv. tomato T1]
 gi|330879117|gb|EGH13266.1| FlhB domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967862|gb|EGH68122.1| FlhB domain-containing protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331015905|gb|EGH95961.1| FlhB domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 107

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           +T P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L 
Sbjct: 1   MTLPDHVPRQAIALSYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|218458074|ref|ZP_03498165.1| flagellar biosynthesis protein FlhB [Rhizobium etli Kim 5]
          Length = 71

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 53/61 (86%)

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +++AKGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++
Sbjct: 1   MVLAKGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRV 60

Query: 350 Y 350
           Y
Sbjct: 61  Y 61


>gi|121601225|ref|YP_994245.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|121230035|gb|ABM52553.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei SAVP1]
          Length = 150

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 236 SYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAK 294
           S   P  +  +   A S    +   +    T    N    A  L Y  +  + AP +VAK
Sbjct: 16  SEAQPARRVGRAERASSIAHRRRRRSRPTTTGSSRN--ERAAVLAYDAKGGDTAPRVVAK 73

Query: 295 GQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           G  L+A+++ + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L+  +Y  +
Sbjct: 74  GYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLAWLYALE 131


>gi|323703510|ref|ZP_08115156.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574]
 gi|323531501|gb|EGB21394.1| type III secretion exporter [Desulfotomaculum nigrificans DSM 574]
          Length = 89

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A ALRY   E+ APV+VA G+  +A  + KIA EHNIP++++  LAR+L  ++ +   I
Sbjct: 8   LAAALRYRHGEDAAPVVVAAGKGELAAAIEKIAREHNIPVYQDQHLARTL-TELGLGVEI 66

Query: 335 PPVFYKAVAQLIYKI 349
           PP  Y+ VA+++  +
Sbjct: 67  PPELYEVVAKILVHV 81


>gi|144900470|emb|CAM77334.1| Type III secretion exporter [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 122

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL+Y   + DAP + A G+  +A+++ ++A+ + + +  +P LA+ L   V +++ I
Sbjct: 30  IAVALQYDPDQADAPTVTASGKGAVAEQILQLAFANGVKVRTDPDLAQVL-AAVEVDTVI 88

Query: 335 PPVFYKAVAQLIYKIYH 351
           P   + AVA+++  +Y 
Sbjct: 89  PLEAFAAVAEILAYVYR 105


>gi|330894459|gb|EGH27120.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 148

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 3/135 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K+I DA  +G    S++      ++      L      +  + + L +    
Sbjct: 3   EKTEKATPKQIRDAREKGQVGQSQDLGKLLVLMVVSEITLGLADDSVDRLQALLALSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGLSVLLSFTLCSV---GMAMLMRLVSSWMQIGFLFAPKALKLDIN 119

Query: 129 RVSLREGIKRIYSIN 143
           +++     K+++S  
Sbjct: 120 KINPFSHAKQMFSGQ 134


>gi|289678892|ref|ZP_06499782.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 107

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L  ++ +  +IP
Sbjct: 11  AIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|254491433|ref|ZP_05104612.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxidans DMS010]
 gi|224462911|gb|EEF79181.1| hypothetical protein MDMS009_1768 [Methylophaga thiooxydans DMS010]
          Length = 96

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    ++AP + A G+  IA+++ +IA EHNIP+ E+  LA  L   + +   IP
Sbjct: 10  AIALQYD--GDNAPTVTASGEGAIAEEILRIAREHNIPLKEDALLAE-LLSDLNLGEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
           P+ Y+ +A++I   Y
Sbjct: 67  PMLYRVIAEVIAYAY 81


>gi|77457802|ref|YP_347307.1| FlhB domain-containing protein [Pseudomonas fluorescens Pf0-1]
 gi|77381805|gb|ABA73318.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 112

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    N AP L AKG   +A+++ +IA +  +PI+E   L   L  ++ +  +IP
Sbjct: 10  AIALKYD--GNHAPTLTAKGDEELAEEILRIARDCEVPIYENAELV-KLLARMELGDSIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   ++ K
Sbjct: 67  EELYRTIAEIIAFAWNLK 84


>gi|269792960|ref|YP_003317864.1| FhlB domain-containing flagellar protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100595|gb|ACZ19582.1| flagellar protein with uncharacterized cytoplasmic FhlB domain-like
           protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 98

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY +  + APV++A G+  +A+++ ++A E ++PI E+ +L  +    + +   IP
Sbjct: 15  AAALRYDEERDRAPVVMASGRGHVAERILEVAREASVPIVEDAALVGA-LLALEVGEEIP 73

Query: 336 PVFYKAVAQLIYKI 349
           P  Y AVA+++  +
Sbjct: 74  PELYGAVAKVLAFV 87


>gi|66046624|ref|YP_236465.1| FlhB domain-containing protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257331|gb|AAY38427.1| FlhB domain protein [Pseudomonas syringae pv. syringae B728a]
 gi|330953816|gb|EGH54076.1| FlhB domain-containing protein [Pseudomonas syringae Cit 7]
 gi|330972504|gb|EGH72570.1| FlhB domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 107

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L  ++ +  +IP
Sbjct: 11  AIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|237753416|ref|ZP_04583896.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375683|gb|EEO25774.1| flagellar basal body protein FlhB [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 94

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q +  AP ++AKG+  +A+K+ + A E +IP+F+  +L  SL   + ++  IP
Sbjct: 11  AVALAYEQNKQRAPKVIAKGEGFLAEKIIEKAKEFDIPLFQSKALVDSLIH-LELDEEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
           P  YKAV ++   +Y 
Sbjct: 70  PTLYKAVVEVFIWLYQ 85


>gi|261855050|ref|YP_003262333.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Halothiobacillus neapolitanus c2]
 gi|261835519|gb|ACX95286.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Halothiobacillus neapolitanus c2]
          Length = 125

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M     +      +P   A+AL+Y     + P +VA GQ+L+A+++   A   ++P+ E+
Sbjct: 1   MSRNIPKPKSE-KHPISRAVALKY--EGTELPQVVATGQHLVAEQIVARAKAADVPLVED 57

Query: 318 PSLARSLFKQVPINSAIPPVFYKAVAQLIYK 348
           P+LA  L   + I   IP   ++AVA+++  
Sbjct: 58  PALADML-ASLDIGDHIPNNLFRAVAEVLSY 87


>gi|157737630|ref|YP_001490313.1| FlhB domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699484|gb|ABV67644.1| FlhB domain protein [Arcobacter butzleri RM4018]
          Length = 94

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +++AP + AKG+ + A  + KIA E+ IPI ++  L   L  Q+ I+  IP
Sbjct: 13  AVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDIDKEIP 71

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA++   IY  
Sbjct: 72  TSMYRAVAEIFSFIYDL 88


>gi|330899495|gb|EGH30914.1| FlhB domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 107

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L  ++ +  +IP
Sbjct: 11  AIALSYD--GQHAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|315637405|ref|ZP_07892618.1| FlhB domain protein [Arcobacter butzleri JV22]
 gi|315478297|gb|EFU69017.1| FlhB domain protein [Arcobacter butzleri JV22]
          Length = 94

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +++AP + AKG+ + A  + KIA E+ IPI ++  L   L  Q+ ++  IP
Sbjct: 13  AVALKYQMEKDNAPKVTAKGKGVTASNIIKIAKENKIPIQKDEDLIE-LLSQIDVDKEIP 71

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+AVA++   IY  
Sbjct: 72  TSMYRAVAEIFSFIYDL 88


>gi|257484836|ref|ZP_05638877.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330986556|gb|EGH84659.1| FlhB domain-containing protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011126|gb|EGH91182.1| FlhB domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 107

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           ++ P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L 
Sbjct: 1   MSLPDHVPRQAIALSYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|288940399|ref|YP_003442639.1| type III secretion exporter [Allochromatium vinosum DSM 180]
 gi|288895771|gb|ADC61607.1| type III secretion exporter [Allochromatium vinosum DSM 180]
          Length = 122

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
             T  A+AL + +    AP + A G  L A+++ KIA EH+IP+  +P L  +L  Q+P+
Sbjct: 8   PKTTKAVALHWDRE--HAPRITATGTGLTAEQILKIAEEHDIPLRADPVLVEAL-AQIPL 64

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
            + IP   Y AVA+++  ++
Sbjct: 65  GAEIPRALYVAVAEVLAFVF 84


>gi|114320959|ref|YP_742642.1| flagellar protein FhlB-like protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227353|gb|ABI57152.1| Uncharacterized cytoplasmic domain of flagellar protein FhlB-like
           protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 119

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y      AP + AKG   +A+++ ++A EH++P+  +  L  ++  Q+ +  AI
Sbjct: 17  LAVALEY--GGQGAPRVTAKGAGPLAERIIELAAEHDVPLETDADLV-AVLAQLELEQAI 73

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           P   Y+ VA++I   Y  K
Sbjct: 74  PESLYRVVAEVIAFAYLVK 92


>gi|224436936|ref|ZP_03657917.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
 gi|313143408|ref|ZP_07805601.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
 gi|313128439|gb|EFR46056.1| flagellar basal body protein FlhB [Helicobacter cinaedi CCUG 18818]
          Length = 91

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++AP +VAKGQN IA K+   A E ++P+F  P L +SL  Q+P++S IP
Sbjct: 6   AVALAYNAEFDNAPRVVAKGQNDIALKIIAKAKEFDVPLFSNPLLVQSLL-QIPLDSHIP 64

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y AV ++   +  
Sbjct: 65  PEMYNAVVEVFVWLLQ 80


>gi|220932827|ref|YP_002509735.1| FlhB domain protein [Halothermothrix orenii H 168]
 gi|219994137|gb|ACL70740.1| FlhB domain protein [Halothermothrix orenii H 168]
          Length = 95

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY  ++++AP +VA G+  IA+K+ + A +H+IPI ++  +  +L + + I + IP
Sbjct: 16  AVALRYNTSKDNAPRIVASGKGTIAEKIMETARKHDIPIEKDQDIVDALIR-LNIGTEIP 74

Query: 336 PVFYKAVAQLIYKIYHKK 353
              YK +A+++  IY  +
Sbjct: 75  QELYKVIAEILSFIYKLE 92


>gi|73538920|ref|YP_299287.1| putative flagellar protein [Ralstonia eutropha JMP134]
 gi|72122257|gb|AAZ64443.1| putative flagellar protein [Ralstonia eutropha JMP134]
          Length = 93

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y QT++ AP +VAKG  ++A+ +   A E  + +   P+L  +L  QV ++S IP
Sbjct: 11  AIALSY-QTDDKAPRVVAKGYGVVAEAIIARAREAGVYVHGSPTLV-NLLMQVDLDSHIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y A+A+L+  +Y  +
Sbjct: 69  PQLYVAIAELLAWLYQLE 86


>gi|182419087|ref|ZP_02950341.1| flagella-associated protein [Clostridium butyricum 5521]
 gi|237669411|ref|ZP_04529393.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377042|gb|EDT74612.1| flagella-associated protein [Clostridium butyricum 5521]
 gi|237655298|gb|EEP52856.1| flagella-associated protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 85

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + AP + A G   IA K+ + A E+N+PI     L   L   V + + IP
Sbjct: 7   AAALKYEFNSD-APTVAASGMGYIADKIIEKAEENNVPIVYNKELTD-LLCNVDVGTEIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y+AVA +I  I
Sbjct: 65  EELYEAVAHVIAFI 78


>gi|297531383|ref|YP_003672658.1| type III secretion exporter [Geobacillus sp. C56-T3]
 gi|297254635|gb|ADI28081.1| type III secretion exporter [Geobacillus sp. C56-T3]
          Length = 98

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +T PT  A  +RY ++   +P +VA+G   +A+K+ ++A +H+IPI E+P L ++L  Q+
Sbjct: 14  MTGPT--AAVIRYDESSGQSPTVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70

Query: 329 PINSAIPPVFYKAVAQLIYKIYHKK 353
            +   IPP  Y  +A+++  I   +
Sbjct: 71  DLGDRIPPQLYAVIAEILILIQELE 95


>gi|225620909|ref|YP_002722167.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae
           WA1]
 gi|225215729|gb|ACN84463.1| flagellar biosynthesis protein flhB [Brachyspira hyodysenteriae
           WA1]
          Length = 89

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y +  ++AP++V+KG N +AK+M  IA +H +P+  +   A+ L  Q+ I   IP
Sbjct: 11  AAALLYNREIHNAPIVVSKGNNYLAKRMVDIARKHKVPVISDEDTAKHLM-QLEIGEEIP 69

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+AV+ ++  IY  K
Sbjct: 70  YSLYEAVSIILKYIYKLK 87


>gi|237799335|ref|ZP_04587796.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022191|gb|EGI02248.1| FlhB domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 107

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           ++ P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L 
Sbjct: 1   MSLPDHVPRQAIALTYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|71733987|ref|YP_275475.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|289626814|ref|ZP_06459768.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646515|ref|ZP_06477858.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298487768|ref|ZP_07005809.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|71554540|gb|AAZ33751.1| flagellar biosynthetic FlhB domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157860|gb|EFH98939.1| FlhB domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320323986|gb|EFW80070.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320328122|gb|EFW84127.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330869033|gb|EGH03742.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330876079|gb|EGH10228.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330883294|gb|EGH17443.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 107

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           ++ P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L 
Sbjct: 1   MSLPDHVPRQAIALSYD--GQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|146307815|ref|YP_001188280.1| flagellar protein FhlB-like protein [Pseudomonas mendocina ymp]
 gi|145576016|gb|ABP85548.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Pseudomonas mendocina ymp]
          Length = 114

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +APVL AKG + +A+ +  IA E+ +PI+E   L R L  ++ +  AIP
Sbjct: 13  AIALNYD--GQNAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 69

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   ++ +
Sbjct: 70  EALYRCIAEIIAFAWYLQ 87


>gi|49089132|gb|AAT51646.1| PA1473 [synthetic construct]
          Length = 112

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|291525311|emb|CBK90898.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Eubacterium rectale DSM 17629]
          Length = 103

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y+  E  AP ++A G+ +IA K+ + A E N+P +++  LA +L  ++ I   IP
Sbjct: 19  AVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGDMIP 76

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  +   
Sbjct: 77  TELYEVVAEILVFVNDL 93


>gi|134298145|ref|YP_001111641.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1]
 gi|134050845|gb|ABO48816.1| flagellar biosynthesis [Desulfotomaculum reducens MI-1]
          Length = 90

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A ALRY   ++ AP +VA G+  +A  + ++A EHNIP++ + +LA +L  ++ + + I
Sbjct: 8   VAAALRYHHGKDHAPTVVAVGKGDLATAIERLATEHNIPLYRDETLAHTL-TELGLGTEI 66

Query: 335 PPVFYKAVAQLIYKI 349
           PP  Y+AVA+++  +
Sbjct: 67  PPELYEAVAKILIHV 81


>gi|116049416|ref|YP_791781.1| FlhB domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390161|ref|ZP_06879636.1| FlhB domain-containing protein [Pseudomonas aeruginosa PAb1]
 gi|115584637|gb|ABJ10652.1| putative FlhB domain protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 111

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|291529230|emb|CBK94816.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Eubacterium rectale M104/1]
          Length = 103

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y+  E  AP ++A G+ +IA K+ + A E N+P +++  LA +L  ++ I   IP
Sbjct: 19  AVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGDMIP 76

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  +   
Sbjct: 77  TELYEVVAEILVFVNDL 93


>gi|254785931|ref|YP_003073360.1| FlhB domain-containing protein [Teredinibacter turnerae T7901]
 gi|237687521|gb|ACR14785.1| FlhB domain protein [Teredinibacter turnerae T7901]
          Length = 95

 Score = 85.6 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PT  A+AL Y      AP + AKG    A+++ +IA E  +P+ +   L   L  Q+ + 
Sbjct: 6   PTK-AVALFYDGE--SAPTITAKGSGEQAEEILRIAREAEVPLCDNGPLVE-LLSQLELG 61

Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
            +IP   Y AVA +I   Y  
Sbjct: 62  DSIPKELYIAVAHIIAFAYQL 82


>gi|238916975|ref|YP_002930492.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750]
 gi|238872335|gb|ACR72045.1| flagellar biosynthesis protein [Eubacterium eligens ATCC 27750]
          Length = 96

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y   E  AP ++A G+  IA+ + + A E ++PI+ +  LA +L  ++ I   I
Sbjct: 12  IAVALEYTPGEQ-APKILATGRGYIAESIIEKAGEADVPIYADSKLADTL-SKLEIGEMI 69

Query: 335 PPVFYKAVAQLIYKI 349
           PP  Y  VA+++  +
Sbjct: 70  PPELYTVVAEILVFV 84


>gi|209963527|ref|YP_002296442.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
           centenum SW]
 gi|209956993|gb|ACI97629.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
           centenum SW]
          Length = 109

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y Q  +  P +VA G+  +A+++  +A+ H +P+ E+  LAR L   +   + IP
Sbjct: 13  AAALTYEQGSDALPRVVASGRGAVAERIVDLAFLHGVPVREDADLARVL-AAIDPGTEIP 71

Query: 336 PVFYKAVAQLIYKIYHK 352
           P    AVA+++  +Y  
Sbjct: 72  PDAIMAVAEVLAHLYRL 88


>gi|291288699|ref|YP_003505515.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885859|gb|ADD69559.1| FlhB domain-containing protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 90

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A A+RY +  +  P LVAKGQ LIA K+   A EH++ I E+  L  +L   + +   IP
Sbjct: 8   AAAIRYDKDIDKVPKLVAKGQGLIADKIIAKAKEHDVHITEDKDLVEAL-STLDLYEEIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
              YK VA L+ ++Y 
Sbjct: 67  EELYKVVAYLLAELYK 82


>gi|51246336|ref|YP_066220.1| flagellar biosynthetic protein (FlhB) [Desulfotalea psychrophila
           LSv54]
 gi|50877373|emb|CAG37213.1| related to flagellar biosynthetic protein (FlhB) [Desulfotalea
           psychrophila LSv54]
          Length = 86

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY Q E+ AP +VA G+ ++A+ + +      + I E+  +   L  Q+ +N  IP
Sbjct: 5   AVALRYHQEEDRAPRVVASGKGIVAENIIETGEAAGVYIQEDRDMVE-LLAQIELNQEIP 63

Query: 336 PVFYKAVAQLIYKIYH 351
              Y AV++++  +Y 
Sbjct: 64  MELYGAVSEILSFVYK 79


>gi|15596670|ref|NP_250164.1| hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]
 gi|107100906|ref|ZP_01364824.1| hypothetical protein PaerPA_01001936 [Pseudomonas aeruginosa PACS2]
 gi|218892654|ref|YP_002441523.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58]
 gi|254234571|ref|ZP_04927894.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719]
 gi|254239822|ref|ZP_04933144.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192]
 gi|313106471|ref|ZP_07792702.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|9947426|gb|AAG04862.1|AE004576_11 hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]
 gi|126166502|gb|EAZ52013.1| hypothetical protein PACG_00432 [Pseudomonas aeruginosa C3719]
 gi|126193200|gb|EAZ57263.1| hypothetical protein PA2G_00449 [Pseudomonas aeruginosa 2192]
 gi|218772882|emb|CAW28694.1| putative FlhB domain protein [Pseudomonas aeruginosa LESB58]
 gi|310879204|gb|EFQ37798.1| putative FlhB domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 111

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|330888994|gb|EGH21655.1| FlhB domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 107

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 269 ITNPTHY---ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLF 325
           ++ P H    A+AL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L 
Sbjct: 1   MSLPDHVPRQAIALSY--GGQQAPTLSAKGDDQLAEAILAIAREYEVPIYENAELV-KLL 57

Query: 326 KQVPINSAIPPVFYKAVAQLIYKIYHKK 353
            ++ +  +IP   Y+ +A++I   +H K
Sbjct: 58  ARMELGDSIPEPLYRTIAEIIAFAWHLK 85


>gi|330502794|ref|YP_004379663.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01]
 gi|328917080|gb|AEB57911.1| flagellar protein FhlB-like protein [Pseudomonas mendocina NK-01]
          Length = 113

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      APVL AKG + +A+ +  IA E+ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALNYD--GQSAPVLSAKGDDELAEAILAIAREYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   ++ +
Sbjct: 69  EALYRCIAEIIAFAWYLQ 86


>gi|254517947|ref|ZP_05130003.1| flagella-associated protein [Clostridium sp. 7_2_43FAA]
 gi|226911696|gb|EEH96897.1| flagella-associated protein [Clostridium sp. 7_2_43FAA]
          Length = 84

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y +    AP + A G   IA K+ + A E+++PI     L   L   V I   IP
Sbjct: 7   AAALKYEENLI-APTVTASGMGHIADKILEKAEENDVPIVYNKELTD-LLCNVDIGEYIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y+AVA +I  +
Sbjct: 65  SDLYEAVAHIIAYV 78


>gi|238924650|ref|YP_002938166.1| flagellar biosynthesis [Eubacterium rectale ATCC 33656]
 gi|238876325|gb|ACR76032.1| flagellar biosynthesis [Eubacterium rectale ATCC 33656]
          Length = 103

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y+  E  AP ++A G+ +IA K+ + A E N+P +++  LA +L  ++ I   IP
Sbjct: 19  AVAIEYVPGEA-APKILATGKGVIADKIIERAKESNVPTYKDDKLADTL-SRLKIGDMIP 76

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  +   
Sbjct: 77  TELYEVVAEILVFVNDL 93


>gi|116696302|ref|YP_841878.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
 gi|113530801|emb|CAJ97148.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
          Length = 97

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q  + AP +VAKG  ++A+ +   A E  + I + P+L  +L  QV ++S +P
Sbjct: 11  AIALSY-QHRDRAPRVVAKGYGVVAEAIIARAREAGVYIHDSPTLV-NLLMQVDLDSHVP 68

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y AVA+L+  IYH 
Sbjct: 69  PQLYVAVAELLAWIYHL 85


>gi|189426369|ref|YP_001953546.1| FlhB domain protein [Geobacter lovleyi SZ]
 gi|189422628|gb|ACD97026.1| FlhB domain protein [Geobacter lovleyi SZ]
          Length = 91

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y Q    APV+VAKG+ ++A+ +   A E  + + E P L  +L  QV ++  IP
Sbjct: 13  AAALSYKQGFY-APVVVAKGKGIMAEAIIACAKEAGVYVHESPELV-TLLMQVDLDEHIP 70

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+AVA+++  IY  +
Sbjct: 71  AELYRAVAEILVWIYKME 88


>gi|330902019|gb|EGH33340.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 131

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE  + K++ DA  +G    S++      ++A     L      +  + + L +    
Sbjct: 3   EKTEKATPKQLRDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKG 62

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
             +     +  I      + LS +   +    + M+  + S  +Q   +     +K    
Sbjct: 63  IDRSFAASVELIASEGLTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPN 119

Query: 129 RVSLREGIKRIY 140
           +++     K+++
Sbjct: 120 KINPFSHAKQMF 131


>gi|124384516|ref|YP_001028101.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|254201857|ref|ZP_04908221.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei FMH]
 gi|254207188|ref|ZP_04913539.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei JHU]
 gi|147747751|gb|EDK54827.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei FMH]
 gi|147752730|gb|EDK59796.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei JHU]
          Length = 127

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 246 QKSIARSRIRHKMMEATSRATIIITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMR 304
           +   A S    +   +    T    N    A  L Y  +  + AP +VAKG  L+A+++ 
Sbjct: 3   RAERASSIAHRRRRRSRPTTTGSSRN--ERAAVLAYDAKGGDTAPRVVAKGYGLVAERII 60

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           + A +  + +   P +  SL  QV +++ IPP  Y+AVA+L+  +Y  +
Sbjct: 61  ERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQLYQAVAELLAWLYALE 108


>gi|90415325|ref|ZP_01223259.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium
           HTCC2207]
 gi|90332648|gb|EAS47818.1| hypothetical protein GB2207_08416 [marine gamma proteobacterium
           HTCC2207]
          Length = 98

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +   P+  A+AL Y      APV+ AKGQ  +A+ + + A +  I I E+P L  +L  Q
Sbjct: 1   MTYKPSRRAVALEY--GNRAAPVMTAKGQGEVAELIIEEAKKQGIQIAEDPQLV-ALLGQ 57

Query: 328 VPINSAIPPVFYKAVAQLIYKIYHKK 353
           + +N  IP   Y AV+ ++  +Y  K
Sbjct: 58  LELNEEIPESLYVAVSVILSWVYWLK 83


>gi|83594159|ref|YP_427911.1| hypothetical protein Rru_A2827 [Rhodospirillum rubrum ATCC 11170]
 gi|83577073|gb|ABC23624.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 123

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 275 YALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
            A+AL Y        P ++A G+  +A ++  +A+ H + + ++  LAR L   V ++S 
Sbjct: 28  LAIALAYEPVDGAPPPRVIATGRGAVADQIIALAFAHGVKVRQDADLARVL-SAVDLDSE 86

Query: 334 IPPVFYKAVAQLIYKIYH 351
           IP   + AVA+++  +Y 
Sbjct: 87  IPVEAFVAVAEILAYVYR 104


>gi|302338392|ref|YP_003803598.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293]
 gi|301635577|gb|ADK81004.1| type III secretion exporter [Spirochaeta smaragdinae DSM 11293]
          Length = 84

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +    AP + AKG    AK++  +A +H +P+  +  L + L+    + + IP
Sbjct: 5   AIALAYDRDTYSAPRITAKGSGEAAKRLIALAKKHGVPVMGDEELVQRLY-LFDLEAVIP 63

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ VA++   +++ +
Sbjct: 64  EDLYEVVAEIYSFVWNLR 81


>gi|126438997|ref|YP_001057280.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           668]
 gi|126218490|gb|ABN81996.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           668]
          Length = 105

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 268 IITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +   P   A  L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  
Sbjct: 1   MSGPPRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLM 59

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
           QV +++ IPP  Y+AVA+L+  +Y  +
Sbjct: 60  QVDLDARIPPQLYQAVAELLAWLYALE 86


>gi|330940611|gb|EGH43653.1| FlhB domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 107

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA E+ +PI+E   L   L  ++ +  +IP
Sbjct: 11  AIALSYD--GQHAPTLSAKGDEQLAEAILAIAREYEVPIYENAELV-KLLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|313905165|ref|ZP_07838534.1| type III secretion exporter [Eubacterium cellulosolvens 6]
 gi|313470068|gb|EFR65401.1| type III secretion exporter [Eubacterium cellulosolvens 6]
          Length = 103

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   +N APV+VA G   +A+K+ + A +  +P++E+ SLA SL  Q+ +   IP
Sbjct: 12  AAALRYDPEKNGAPVIVASGMGYMAEKITETAMKAGVPVYEDDSLA-SLLTQLKLGKEIP 70

Query: 336 PVFYKAVAQLIYKIY 350
              ++A+ ++   +Y
Sbjct: 71  EELFQAIVEI--YVY 83


>gi|240147023|ref|ZP_04745624.1| flagellar basal body protein FlhB [Roseburia intestinalis L1-82]
 gi|257200815|gb|EEU99099.1| flagellar basal body protein FlhB [Roseburia intestinalis L1-82]
 gi|291535190|emb|CBL08302.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Roseburia intestinalis M50/1]
 gi|291539720|emb|CBL12831.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Roseburia intestinalis XB6B4]
          Length = 104

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y    + AP ++A G+  +A+++ + A E+++P +++  LA +L  ++ I   IP
Sbjct: 17  AVAVAYEPG-DAAPKILAAGKGEVAERIIEKAKENDVPFYQDNKLAETL-SKLQIGDTIP 74

Query: 336 PVFYKAVAQLIYKI 349
           P  Y  VA+++  +
Sbjct: 75  PELYDVVAEILVFV 88


>gi|192361951|ref|YP_001982536.1| FlhB domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190688116|gb|ACE85794.1| FlhB domain protein [Cellvibrio japonicus Ueda107]
          Length = 100

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +AP + AKG   +A+++  IA EH +P+ + PSL   L   + +   +P
Sbjct: 12  AVALFYD--GVNAPQVTAKGAGKVAEEIIAIAQEHGVPLCDNPSLVD-LLVNLELGDEVP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y AVA +I   Y  +
Sbjct: 69  EALYIAVAYIIAFAYQLE 86


>gi|196247653|ref|ZP_03146355.1| flagellar biosynthesis [Geobacillus sp. G11MC16]
 gi|196212437|gb|EDY07194.1| flagellar biosynthesis [Geobacillus sp. G11MC16]
          Length = 95

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++APV+ AKG   +A+ +  +A ++ + + ++PSL   L  +V IN AIP
Sbjct: 8   AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 66

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  VA+L   +Y  
Sbjct: 67  EGLYALVAELFAFLYQL 83


>gi|118443083|ref|YP_877449.1| flagella-associated protein [Clostridium novyi NT]
 gi|118133539|gb|ABK60583.1| flagella-associated protein [Clostridium novyi NT]
          Length = 90

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + AP++ A G   +A K+ + A ++ +P+     LA  L   V + S IP
Sbjct: 9   AAALKYEMNYD-APIVSAAGMGYVADKIIEEAKKNEVPVVYNKELAE-LLTNVDVGSYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|152985566|ref|YP_001349208.1| flagellar biosynthetic FlhB domain-containing protein [Pseudomonas
           aeruginosa PA7]
 gi|150960724|gb|ABR82749.1| flagellar biosynthetic FlhB domain protein [Pseudomonas aeruginosa
           PA7]
          Length = 111

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP L AKG   +A+ +  IA ++ +PI+E   L R L  ++ +  AIP
Sbjct: 12  AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 69  EALYRTIAEIIAFAWHLK 86


>gi|225174800|ref|ZP_03728798.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169927|gb|EEG78723.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 89

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y + ++DAP +VA+G   IA+++  +A EH +P+ +   LA +L   V     IP
Sbjct: 9   AVALQYQEEKDDAPRVVARGAGKIAEQILLLAQEHGVPVKQSKVLAETL-SLVEPGDEIP 67

Query: 336 PVFYKAVAQLIYKIY 350
              Y AVAQ++ ++ 
Sbjct: 68  EGLYLAVAQIMSEVL 82


>gi|218509883|ref|ZP_03507761.1| flagellar biosynthesis protein FlhB [Rhizobium etli Brasil 5]
          Length = 67

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 49/57 (85%)

Query: 294 KGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIY 350
           KGQ+LIA K+R+IA ++ IP+FE+P LARS+F QV ++S IP VFYKAVA+LI+++Y
Sbjct: 1   KGQDLIALKIREIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVY 57


>gi|168185551|ref|ZP_02620186.1| flagella-associated protein [Clostridium botulinum C str. Eklund]
 gi|169296547|gb|EDS78680.1| flagella-associated protein [Clostridium botulinum C str. Eklund]
          Length = 90

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + AP++ A G   +A K+ + A +  +P+     LA  L   V + S IP
Sbjct: 9   AAALKYEMNYD-APIVSAAGMGHVADKIIEEAEKSEVPVVYNKELAE-LLTNVDVGSYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|308048779|ref|YP_003912345.1| FlhB domain-containing protein [Ferrimonas balearica DSM 9799]
 gi|307630969|gb|ADN75271.1| FlhB domain-containing protein [Ferrimonas balearica DSM 9799]
          Length = 105

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y     DAP +VA G+  +A+++R+ A E  + + ++  LA  L  Q+ +  
Sbjct: 10  TDKAVALGYDGK--DAPKVVASGEGELARQIRQAAEEAGVLVHQDAQLAH-LLSQLELGQ 66

Query: 333 AIPPVFYKAVAQLIYKIY 350
           +IPP  Y  +A+LI   Y
Sbjct: 67  SIPPALYVVIAELIAYAY 84


>gi|90021509|ref|YP_527336.1| flagellar protein FhlB-like protein [Saccharophagus degradans 2-40]
 gi|89951109|gb|ABD81124.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Saccharophagus degradans 2-40]
          Length = 98

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y       P++ AKG    A+++ +IA E  +P+ +   L   L  Q+ +  +IP
Sbjct: 14  AVALYYDGENT--PIVTAKGLGEEAQEIIRIAEESGVPLCDNALLVE-LLAQLELGDSIP 70

Query: 336 PVFYKAVAQLIYKIYHKKI 354
              Y A+A ++   Y  ++
Sbjct: 71  GSLYTAIAHILSFAYQLEL 89


>gi|53717877|ref|YP_106863.1| putative export system protein [Burkholderia pseudomallei K96243]
 gi|76809013|ref|YP_331835.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia pseudomallei 1710b]
 gi|126452833|ref|YP_001064522.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           1106a]
 gi|134283659|ref|ZP_01770358.1| flagellar biosynthesis protein-like protein [Burkholderia
           pseudomallei 305]
 gi|167717608|ref|ZP_02400844.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           DM98]
 gi|167736651|ref|ZP_02409425.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           14]
 gi|167813749|ref|ZP_02445429.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           91]
 gi|167822265|ref|ZP_02453736.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           9]
 gi|167843859|ref|ZP_02469367.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           B7210]
 gi|167892359|ref|ZP_02479761.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           7894]
 gi|167900856|ref|ZP_02488061.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167909073|ref|ZP_02496164.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           112]
 gi|167917114|ref|ZP_02504205.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           BCC215]
 gi|217425046|ref|ZP_03456542.1| FlhB domain protein [Burkholderia pseudomallei 576]
 gi|226199749|ref|ZP_03795300.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810417|ref|YP_002894868.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242314705|ref|ZP_04813721.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1106b]
 gi|254182179|ref|ZP_04888776.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           1655]
 gi|254188109|ref|ZP_04894621.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196973|ref|ZP_04903397.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           S13]
 gi|254259290|ref|ZP_04950344.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1710a]
 gi|254295778|ref|ZP_04963235.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           406e]
 gi|52208291|emb|CAH34223.1| putative export system protein [Burkholderia pseudomallei K96243]
 gi|76578466|gb|ABA47941.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           pseudomallei 1710b]
 gi|126226475|gb|ABN90015.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1106a]
 gi|134245068|gb|EBA45163.1| flagellar biosynthesis protein-like protein [Burkholderia
           pseudomallei 305]
 gi|157805669|gb|EDO82839.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           406e]
 gi|157935789|gb|EDO91459.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653716|gb|EDS86409.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           S13]
 gi|184212717|gb|EDU09760.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei
           1655]
 gi|217392066|gb|EEC32092.1| FlhB domain protein [Burkholderia pseudomallei 576]
 gi|225928100|gb|EEH24136.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505628|gb|ACQ97946.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242137944|gb|EES24346.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1106b]
 gi|254217979|gb|EET07363.1| flagellar biosynthesis protein homolog [Burkholderia pseudomallei
           1710a]
          Length = 105

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 268 IITNPTHYALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +   P   A  L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  
Sbjct: 1   MSGPPRKRAAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLM 59

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
           QV +++ IPP  Y+AVA+L+  +Y  +
Sbjct: 60  QVDLDARIPPQLYQAVAELLAWLYALE 86


>gi|138894728|ref|YP_001125181.1| flagellar biosynthesis protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266241|gb|ABO66436.1| Flagellar biosynthesis [Geobacillus thermodenitrificans NG80-2]
          Length = 98

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    ++APV+ AKG   +A+ +  +A ++ + + ++PSL   L  +V IN AIP
Sbjct: 11  AVALSYDAAVDEAPVVKAKGSGEVAEAIIAVAEQYGVLVRKDPSLVE-LLSEVEINEAIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  VA+L   +Y  
Sbjct: 70  EGLYALVAELFAFLYQL 86


>gi|306821511|ref|ZP_07455113.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550469|gb|EFM38458.1| flagellar biosynthetic protein FlhB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 87

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ AP ++AKG N +AK M + A E +IPI+ +  +   L + + IN  IP
Sbjct: 9   AIALKYDSEEDIAPKVIAKGDNYVAKNMVEKAEELDIPIYRDEKIVHQL-RNLEINDNIP 67

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+A+AQ++  I   
Sbjct: 68  QELYEAIAQVLIFITKL 84


>gi|291519508|emb|CBK74729.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Butyrivibrio fibrisolvens 16/4]
          Length = 96

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP ++A G+  +A+++ + A ++++P +++  LA++L  ++ I  AIP
Sbjct: 13  AVALSYEVG-DAAPKILASGKGYVAEQIIEEAKKNDVPFYQDNELAQTL-SKLNIGDAIP 70

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+ VA+++  +   +
Sbjct: 71  PELYEVVAEILVFVNDME 88


>gi|317122916|ref|YP_004102919.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM
           12885]
 gi|315592896|gb|ADU52192.1| hypothetical protein Tmar_2111 [Thermaerobacter marianensis DSM
           12885]
          Length = 211

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPS---LARSLFK 326
           T P   A ALRY    + AP +VA G   +A+ + + A E  +P    P    LAR    
Sbjct: 18  TRPPRAAAALRYDPARDGAPRVVAAGFGAMAEAILRRAREAGVPQVTSPVAPILAR---- 73

Query: 327 QVPINSAIPPVFYKAVAQLIY 347
            +P    IPP  Y+ VA+++ 
Sbjct: 74  -IPPGQEIPPALYEVVARIMA 93


>gi|149182544|ref|ZP_01861016.1| flagellar biosynthesis [Bacillus sp. SG-1]
 gi|148849736|gb|EDL63914.1| flagellar biosynthesis [Bacillus sp. SG-1]
          Length = 98

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY ++E  AP ++A+G   +A K+ ++A EHNI + E+ SL +SL   +
Sbjct: 14  MNGPT--AAVIRYEESEGKAPKVIAQGTGHLATKIMELAKEHNITMQEDSSLVQSLL-DI 70

Query: 329 PINSAIPPVFYKAVAQLIYKI 349
            +   +PP  Y  +A+++  I
Sbjct: 71  DLGENVPPQLYSVIAEILLFI 91


>gi|326796438|ref|YP_004314258.1| type III secretion exporter [Marinomonas mediterranea MMB-1]
 gi|326547202|gb|ADZ92422.1| type III secretion exporter [Marinomonas mediterranea MMB-1]
          Length = 82

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y     +AP + AKG  L+A+++ ++A E+++ + E P L   L   + I   IP
Sbjct: 4   AVALQYD--YQNAPKVTAKGSGLLAERIMEVAEENDVLLHESPELVEVL-ATLEIGDEIP 60

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y AVA++I   ++ K
Sbjct: 61  ESLYLAVAEIIAFAHNIK 78


>gi|295678020|ref|YP_003606544.1| type III secretion exporter [Burkholderia sp. CCGE1002]
 gi|295437863|gb|ADG17033.1| type III secretion exporter [Burkholderia sp. CCGE1002]
          Length = 122

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y       AP +VAKG  L+A  + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAHGGEPAPRVVAKGYGLLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPELYQAVAELLAWLHRLE 86


>gi|302343755|ref|YP_003808284.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii
           DSM 2075]
 gi|301640368|gb|ADK85690.1| cytoplasmic domain of flagellar protein FhlB [Desulfarculus baarsii
           DSM 2075]
          Length = 106

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 276 ALALRYIQT---ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           A+ALRY         A  + AKG+  +A+++ ++A +H +PI ++P L   +  ++ I+ 
Sbjct: 16  AVALRYGPEGHETTGA--VAAKGRLRLAERIIELARQHGVPIKQDPDLVE-ILARLDIDE 72

Query: 333 AIPPVFYKAVAQLIYKIYH 351
            IPP  Y   A+++  ++ 
Sbjct: 73  EIPPELYVVAAEILAFVHR 91


>gi|239995701|ref|ZP_04716225.1| uncharacterized C-terminal FlhB domain-containing protein
           [Alteromonas macleodii ATCC 27126]
          Length = 105

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 273 THYALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           T  A+ L+Y    + +AP +VAKG   +A+ +  +A E  I I E+P L+  L   + + 
Sbjct: 7   TKRAIGLKYDGGDKKNAPKVVAKGYGDLAEAIIAMAEETGILIHEDPYLSEVL-ATLDVG 65

Query: 332 SAIPPVFYKAVAQLIY--KIYHKKI 354
             IP   Y  +A+L+    +   KI
Sbjct: 66  QDIPESLYYVIAELLAYSYVLQGKI 90


>gi|227871678|ref|ZP_03990091.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus
           F0268]
 gi|227842477|gb|EEJ52694.1| possible flagellar biosynthesis protein FlhB [Oribacterium sinus
           F0268]
          Length = 111

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y   +N AP++VA G   +A+K+ + A +  +P++E+ SLA SL  Q+ + + IP
Sbjct: 12  AAALKYDNEKNGAPMIVAAGMGHMAEKITETAMKSGVPVYEDDSLA-SLLTQMKLGAEIP 70

Query: 336 PVFYKAVAQLIYKIY 350
              ++A+ ++   IY
Sbjct: 71  EELFQAIVEI--YIY 83


>gi|330976060|gb|EGH76126.1| FlhB domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 107

 Score = 82.9 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ALAL Y      AP L AKG + +A+ +  IA E+ +PI+E   L   L  ++ +  +IP
Sbjct: 11  ALALSYD--GQHAPTLSAKGDDQLAEAILAIAPEYEVPIYENAELV-KLLARMELGDSIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A++I   +H K
Sbjct: 68  EPLYRTIAEIIAFAWHLK 85


>gi|330903429|gb|EGH34001.1| type III secretion protein HrcU [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 159

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 62/162 (38%), Gaps = 3/162 (1%)

Query: 20  EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
            DA  +G    S++      ++A     L      +  + + L +      +     +  
Sbjct: 1   RDAREKGQVGQSQDLGKLLVLMAVSEITLALADESVSRLEALLSLSFKGIDRSFAASVEL 60

Query: 80  IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
           I      + LS +   +    + M+  + S  +Q   +     +K    +++     K++
Sbjct: 61  IASEGLTVLLSFTLCSV---GIAMLMRLISSWMQIGFLFAPKALKIDPNKINPFSHAKQM 117

Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
           +S  NL+N + S +K I +G  + + +     T++   +++ 
Sbjct: 118 FSGQNLLNLLLSVLKAIAIGATLYVQVKPVLGTLVLLANSDL 159


>gi|239817130|ref|YP_002946040.1| flagellar biosynthesis protein [Variovorax paradoxus S110]
 gi|239803707|gb|ACS20774.1| flagellar biosynthesis protein [Variovorax paradoxus S110]
          Length = 97

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A+AL        APV+VAKG  + A+ + + A E+ + +   P L R L  QV ++
Sbjct: 7   PRQSAVALS-HADTAKAPVVVAKGYGVTAESILRQARENGVYVHASPDLIR-LLMQVDLD 64

Query: 332 SAIPPVFYKAVAQLIYKI 349
             IPP  Y AVA+++  I
Sbjct: 65  RQIPPQLYLAVAEVMAWI 82


>gi|330862334|emb|CBX72494.1| hypothetical protein YEW_GP28250 [Yersinia enterocolitica W22703]
          Length = 143

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 14  PSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK 73
           P+S K+  A  +G+ P S++ ++ + ++  LI L  F       +      +  +A +  
Sbjct: 12  PTSGKLSKARKKGDIPRSKDVTMAAGLVTSLITLTLFLPYYKELIGESFLAVGRTAGR-- 69

Query: 74  LEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
           ++D + I  LL        + ++  L    +  I + L+          + P FK++S  
Sbjct: 70  IDDPTAIEQLLLANLFIFFKFLL-TLAPIPLVSILATLVPGGWNFTPVKLIPDFKKLSPL 128

Query: 134 EGIKRIY 140
            GIK+ +
Sbjct: 129 AGIKKYF 135


>gi|92114151|ref|YP_574079.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91797241|gb|ABE59380.1| flagellar protein FhlB-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 101

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q  + APV+VAKG   +A+++ + A    I + + P L  +L  QV +++ IP
Sbjct: 11  AVALAY-QDASAAPVVVAKGYGELAERIVEKAKHEGIFVHDAPELV-ALLMQVDMDAEIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+ +A+L+  +Y  +
Sbjct: 69  PTLYQVIAELLAWVYDLE 86


>gi|222100070|ref|YP_002534638.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM
           4359]
 gi|221572460|gb|ACM23272.1| Flagellar biosynthesis-related protein [Thermotoga neapolitana DSM
           4359]
          Length = 80

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY  +  +AP +VAKG   +A+K+ +IA  + IPI E P L   L + + + S IP
Sbjct: 9   AVALRYDPSSMNAPEVVAKGAGEVAEKIIEIAKRYGIPIEERPDLVDDLLR-LELFSEIP 67

Query: 336 PVFYKAVAQ 344
              Y  +A+
Sbjct: 68  EEMYLVIAE 76


>gi|309389531|gb|ADO77411.1| FlhB domain protein [Halanaerobium praevalens DSM 2228]
          Length = 89

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL+Y Q  + AP ++A G+  IA+ + K A E NIPI ++  + + L  ++ I   IP 
Sbjct: 10  VALKYDQKNDQAPRIIASGKGSIAEMIIKKAKEENIPIKKDKDVVQVL-AELNIGEQIPE 68

Query: 337 VFYKAVAQLIYKIYHKK 353
             Y  +A+++   Y  +
Sbjct: 69  ELYTVIAEILSFFYDLE 85


>gi|15644420|ref|NP_229472.1| flagellar biosynthesis-related protein [Thermotoga maritima MSB8]
 gi|4982247|gb|AAD36739.1|AE001808_14 flagellar biosynthesis-related protein [Thermotoga maritima MSB8]
          Length = 86

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y  T   AP +VAKG   +A+++ ++A  H IPI E P +   L + + + S IP
Sbjct: 9   AVALKYDPTRTSAPEVVAKGVGEVAERIIEMARRHGIPIEERPDIIDDLLR-LDLFSEIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  +A++   +  
Sbjct: 68  EEMYLVIAEIYAFLKR 83


>gi|109899563|ref|YP_662818.1| FlhB domain-containing protein [Pseudoalteromonas atlantica T6c]
 gi|109701844|gb|ABG41764.1| FlhB domain protein [Pseudoalteromonas atlantica T6c]
          Length = 110

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+AL++ +  + +AP +VAKG   +A ++  +A E  + I E+P L+  L   + +   I
Sbjct: 15  AVALKHHEGDKKNAPQVVAKGFGDLADEIITLAKESGVLIHEDPYLSEFL-ASLDLGQEI 73

Query: 335 PPVFYKAVAQLI--YKIYHKK 353
           P   Y  +A+LI    +   K
Sbjct: 74  PEELYHVIAELISFSYVLQGK 94


>gi|239828347|ref|YP_002950971.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
 gi|239808640|gb|ACS25705.1| flagellar biosynthesis protein [Geobacillus sp. WCH70]
          Length = 98

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           I  PT  A  +RY +    +P +VA+G   +A+K+ ++A +HN+ I E+P L ++L   +
Sbjct: 14  INGPT--AAVIRYDEETGKSPTVVAQGTGYVAQKIIELAKQHNVHIQEDPLLVQNLL-NL 70

Query: 329 PINSAIPPVFYKAVA 343
            +  +IPP  Y  +A
Sbjct: 71  DLGDSIPPQLYAVIA 85


>gi|288573050|ref|ZP_06391407.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568791|gb|EFC90348.1| flagellar biosynthesis [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 91

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y + E +AP LVA G   IA+++ ++A E  +PI E+ +L  +    + I   IP
Sbjct: 11  AAALKYDREEREAPHLVASGSGRIAERIVEVAREAEVPIVEDAALVSA-LLALDIGEEIP 69

Query: 336 PVFYKAVAQLIYKIYH 351
              Y+AVA+++  IY 
Sbjct: 70  LDLYEAVARVLAFIYK 85


>gi|325290208|ref|YP_004266389.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271]
 gi|324965609|gb|ADY56388.1| type III secretion exporter [Syntrophobotulus glycolicus DSM 8271]
          Length = 101

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A AL Y      AP +VAKG+  IA+K+ + A E  IPI +  +L  +L   V ++
Sbjct: 11  PKEKAAALAY--EHTGAPRVVAKGEGYIAQKIIEKAGEQGIPIQKNEALVNALM-LVELS 67

Query: 332 SAIPPVFYKAVAQLIYKIYHK 352
             IP   Y+ VAQ++  IY  
Sbjct: 68  GEIPVELYEVVAQVLAFIYRL 88


>gi|160880531|ref|YP_001559499.1| flagellar protein FhlB-like protein [Clostridium phytofermentans
           ISDg]
 gi|160429197|gb|ABX42760.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Clostridium phytofermentans ISDg]
          Length = 122

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A+ Y   ++ AP ++A G+N++A K+ + A E +IPI ++  LA +L  ++ +   IP
Sbjct: 34  AVAISYDP-KDPAPRIIASGKNILADKIIEKALEEDIPIHKDVPLANTL-SKLELGDCIP 91

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y  V+Q++  +   
Sbjct: 92  PELYGIVSQVLLFVDRM 108


>gi|260437011|ref|ZP_05790827.1| FlhB domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292810320|gb|EFF69525.1| FlhB domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 96

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   E  AP ++A G  +IA K+ + A   ++P++E+  LA +L  ++ I   IP
Sbjct: 11  AIAIQYNPDEV-APKILASGTGIIADKIIEKAKSSDVPLYEDNKLANTL-SKLDIGEYIP 68

Query: 336 PVFYKAVAQLIYKI 349
           P  Y  VA+++  +
Sbjct: 69  PELYSIVAEILVFV 82


>gi|320015477|gb|ADV99048.1| Flagellar biosynthesis protein flhB [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 120

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 2/114 (1%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M+E D+   K+E P++ K+E A  +G  P SRE +    + A L  L          +++
Sbjct: 1   MAE-DSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSA 59

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQR 114
            +   L       + +   ++  +  L       ++P     ++  +   ++  
Sbjct: 60  MVAQGL-HFDHSMVSNDKQMLRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLG 112


>gi|167770250|ref|ZP_02442303.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM
           17241]
 gi|167667572|gb|EDS11702.1| hypothetical protein ANACOL_01593 [Anaerotruncus colihominis DSM
           17241]
          Length = 112

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ AP+++A G   +A+++  +A +  IP+F + S A SL   + + S IP
Sbjct: 9   AVALKYNAEEDVAPIVIASGYGELAQRIIDVAEKQGIPVFRDDS-AVSLMCMLEVGSNIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ VA +  ++  
Sbjct: 68  PELYQVVAAIYCQLLQ 83


>gi|23016629|ref|ZP_00056383.1| COG2257: Uncharacterized homolog of the cytoplasmic domain of
           flagellar protein FhlB [Magnetospirillum magnetotacticum
           MS-1]
          Length = 117

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             A+AL         P + A G+  +A+++ ++A+ H + +  +P LA  L   V +++ 
Sbjct: 26  QVAVALADDPDNPGLPTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTV 84

Query: 334 IPPVFYKAVAQLIYKIYH 351
           IP   + AVA+++  +Y 
Sbjct: 85  IPVEAFVAVAEILAYVYR 102


>gi|224373751|ref|YP_002608123.1| flagellar basal body protein FlhB [Nautilia profundicola AmH]
 gi|223589598|gb|ACM93334.1| flagellar basal body protein FlhB [Nautilia profundicola AmH]
          Length = 87

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E +AP ++AKG+  +A+K+ + A  +++P+F+  +LA  L   V +   IP
Sbjct: 4   AVALKYKAYEENAPKVLAKGKGELARKIIEKAKLYDVPLFQNETLADMLL-NVEVGEEIP 62

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  YKAV  +   +Y  +
Sbjct: 63  PKMYKAVVDVFIWLYKLE 80


>gi|289805561|ref|ZP_06536190.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 82

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
          M+E ++ D+KTEAP+  ++E A  EG  P SRE +    +L  +  + F    G  S+  
Sbjct: 1  MAE-ESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWF----GGESLAR 55

Query: 61 DLHVLLASATQRKLEDISHIVFLLTHL 87
           L  +L++        ++    +L  +
Sbjct: 56 QLAGMLSAGLHFDHRMVNDPNLILGQI 82


>gi|315185654|gb|EFU19422.1| type III secretion exporter [Spirochaeta thermophila DSM 6578]
          Length = 104

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y      AP ++AKG+   A  + ++A EH IPI E   +AR  +      + IP
Sbjct: 16  AVAMKYTPEL-PAPFVIAKGRGKTADLILELAREHRIPIVEHR-IAREGYDLFLPGTYIP 73

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA +   +Y
Sbjct: 74  EDLYEVVATIFAFVY 88


>gi|88812111|ref|ZP_01127363.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Nitrococcus mobilis Nb-231]
 gi|88790615|gb|EAR21730.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Nitrococcus mobilis Nb-231]
          Length = 113

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I +    A+AL Y  T + AP + A+G   +A+++ ++A  H+IP++    L + L  Q
Sbjct: 12  MIEHDRRLAVALEY--TGHGAPRVTAQGHGALAEEIIRLAQAHDIPLYPNRDLVQVL-AQ 68

Query: 328 VPINSAIPPVFYKAVAQLIYKIY 350
           + ++  IP + Y AVA+LI   Y
Sbjct: 69  IELDQEIPELLYHAVAELIAFAY 91


>gi|150019417|ref|YP_001311671.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052]
 gi|149905882|gb|ABR36715.1| flagella-associated protein [Clostridium beijerinckii NCIMB 8052]
          Length = 86

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + APV+ A G   IA K+ + A ++ +PI     L   L   V +   IP
Sbjct: 7   AAALKYEFNSD-APVVTAAGMGHIADKIIEKATQNEVPIVYNKELTD-LLCNVDVGDEIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y+AVA +I  +
Sbjct: 65  TELYEAVAHVIAFL 78


>gi|229824938|ref|ZP_04451007.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC
           49176]
 gi|229790941|gb|EEP27055.1| hypothetical protein GCWU000182_00287 [Abiotrophia defectiva ATCC
           49176]
          Length = 97

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +AP ++A G+  +A+K+   + +++IP +E+  L +SL  Q+ I   IP
Sbjct: 10  AVALGYDTESGEAPYVIAAGKGALAEKIISESKKNDIPQYEDEKLVKSL-SQLEIGENIP 68

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+ VAQ++  +
Sbjct: 69  PELYEVVAQVLLFV 82


>gi|209522461|ref|ZP_03271060.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
 gi|209497100|gb|EDZ97356.1| flagellar biosynthetic protein FlhB [Burkholderia sp. H160]
          Length = 114

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y       AP +VAKG  LIA+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAHGGEPAPRVVAKGYGLIAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPQLYQAVAELLAWLHRLE 86


>gi|32266819|ref|NP_860851.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
           51449]
 gi|32262871|gb|AAP77917.1| flagellar basal body protein FlhB [Helicobacter hepaticus ATCC
           51449]
          Length = 92

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP +VAKG+N +A K+   A E ++P+F  P L  SL  ++P++S IP
Sbjct: 6   AVALAYNAQNDSAPRVVAKGKNELALKIIAKAQEFDVPLFSNPLLVDSLL-EIPLDSHIP 64

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y AV ++   +  
Sbjct: 65  PEMYNAVVEVFVWLLK 80


>gi|332994252|gb|AEF04307.1| hypothetical protein ambt_13945 [Alteromonas sp. SN2]
          Length = 103

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+ L+Y    +  AP +VAKG   +A+ +  +A E  I I E+P L+  L   + +   I
Sbjct: 8   AIGLKYDGGDKKTAPKVVAKGYGDLAEAIIAMAEESGILIHEDPYLSEVL-STLDLGQDI 66

Query: 335 PPVFYKAVAQLIY--KIYHKKI 354
           P   Y  +A+L+    +   KI
Sbjct: 67  PESLYFVIAELLAYSYVLQGKI 88


>gi|254459185|ref|ZP_05072607.1| FlhB domain protein [Campylobacterales bacterium GD 1]
 gi|207084078|gb|EDZ61368.1| FlhB domain protein [Campylobacterales bacterium GD 1]
          Length = 83

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   +  AP +VAKGQ   A+ + KIA  HN+PI ++  L   L  +V ++  +P
Sbjct: 4   AAALRYNIDKESAPRVVAKGQGKSAENIIKIAELHNLPIKKDEDLME-LLSKVELDKEVP 62

Query: 336 PVFYKAVAQLIYKIYH 351
              YKAVA++   IY 
Sbjct: 63  AALYKAVAEVFSFIYK 78


>gi|152997420|ref|YP_001342255.1| hypothetical protein Mmwyl1_3417 [Marinomonas sp. MWYL1]
 gi|150838344|gb|ABR72320.1| conserved hypothetical protein [Marinomonas sp. MWYL1]
          Length = 82

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y  +   AP +VAKG  L+A+K+  +A E+++ + + P L   L   + +   IP
Sbjct: 4   AVALKYDFS--AAPTVVAKGSGLLAEKILAVAKENDVLLHQSPELVEML-STLELGEEIP 60

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y AVA++I   +  K
Sbjct: 61  ESLYLAVAEVIAFAHRIK 78


>gi|34558360|ref|NP_908175.1| hypothetical protein WS2076 [Wolinella succinogenes DSM 1740]
 gi|34484079|emb|CAE11075.1| hypothetical protein WS2076 [Wolinella succinogenes]
          Length = 102

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           ++   P   A AL Y   +  AP L+AKG+ +IA+++ + A E  IP+F+   L  SL  
Sbjct: 11  LLAMPPLPKAAALAYDSQKQRAPKLLAKGKGIIAERIIERARELEIPLFQNELLVNSLL- 69

Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349
           + P++  IPP  YKAV ++   +
Sbjct: 70  ESPLDQEIPPALYKAVVEVFVWL 92


>gi|296126255|ref|YP_003633507.1| type III secretion exporter [Brachyspira murdochii DSM 12563]
 gi|296018071|gb|ADG71308.1| type III secretion exporter [Brachyspira murdochii DSM 12563]
          Length = 87

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A A+ Y +  ++APV++AKG++ +AK+M + A+++ +P+  +   A  L  Q+ I   IP
Sbjct: 9   AAAILYNRDIHNAPVVIAKGRHYLAKRMAETAHKNKVPVVSDEKTAHHLM-QLEIGEEIP 67

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+AV+ ++  IY  K
Sbjct: 68  YSLYEAVSIILKYIYKLK 85


>gi|261420589|ref|YP_003254271.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61]
 gi|319768259|ref|YP_004133760.1| type III secretion exporter [Geobacillus sp. Y412MC52]
 gi|261377046|gb|ACX79789.1| flagellar biosynthesis protein [Geobacillus sp. Y412MC61]
 gi|317113125|gb|ADU95617.1| type III secretion exporter [Geobacillus sp. Y412MC52]
          Length = 98

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +T PT  A  +RY ++   +P++VA+G   +A+K+ ++A +H+IPI E+P L ++L  Q+
Sbjct: 14  MTGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHIPIQEDPLLVQNLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDRIPPQLYAVIA 85


>gi|163794135|ref|ZP_02188108.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199]
 gi|159180749|gb|EDP65268.1| hypothetical protein BAL199_01939 [alpha proteobacterium BAL199]
          Length = 109

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 274 HYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSA 333
             ++AL +    + AP ++AKG  ++A+++ ++A+++++ + ++P LA+ + + V ++  
Sbjct: 17  QVSIALSHDIGSDQAPTVIAKGYGVLAEQILRLAFDNDVKVRKDPDLAQ-ILEVVDVDCE 75

Query: 334 IPPVFYKAVAQLIYKIYH 351
           IP   + AVA+++  +Y 
Sbjct: 76  IPVQAFAAVAEILTYVYR 93


>gi|170696027|ref|ZP_02887164.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
 gi|170139019|gb|EDT07210.1| flagellar biosynthetic protein FlhB [Burkholderia graminis C4D1M]
          Length = 123

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP ++AKG  ++A  + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDANGGDPAPRVIAKGYGMLADMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPQLYQAVAELLAWLHRLE 86


>gi|167628834|ref|YP_001679333.1| flagellar biosynthesis protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591574|gb|ABZ83322.1| flagellar biosynthesis protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 100

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           ALRY    + APV++A+G+  +A+K+ ++A E NIPI E+P L  +L   + +   IPP 
Sbjct: 21  ALRYDPNSD-APVVIAQGKGHLARKIIEMAKEKNIPIQEDPLLVENLI-DMDLGDTIPPQ 78

Query: 338 FYKAVAQLIYKI 349
            Y  VA+++  I
Sbjct: 79  LYLVVAEILLMI 90


>gi|119775405|ref|YP_928145.1| FlhB domain-containing protein [Shewanella amazonensis SB2B]
 gi|119767905|gb|ABM00476.1| FlhB domain protein [Shewanella amazonensis SB2B]
          Length = 100

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL Y    N AP + AKG+ L+A+++  +A E  I I E+P+LA  L   + +N +I
Sbjct: 7   IAVALSYD--GNGAPKVTAKGEALLAEEIIALARECGIHIHEDPALANFL-TMMELNESI 63

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y  +A+L+  +Y
Sbjct: 64  PKELYVLIAELLSFVY 79


>gi|94314177|ref|YP_587386.1| putative flagellar protein [Cupriavidus metallidurans CH34]
 gi|93358029|gb|ABF12117.1| putative flagellar protein [Cupriavidus metallidurans CH34]
          Length = 91

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y + E  AP +VAKG  + A+ +   A E  + +   P+L  +L  QV ++S IP
Sbjct: 9   AVALSYEEGE-KAPRVVAKGYGVTAESIIARAQEAGVYVHNSPALV-NLLMQVDMDSQIP 66

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y AVAQL+  ++ 
Sbjct: 67  PQLYLAVAQLLAWLHQ 82


>gi|312879569|ref|ZP_07739369.1| type III secretion exporter [Aminomonas paucivorans DSM 12260]
 gi|310782860|gb|EFQ23258.1| type III secretion exporter [Aminomonas paucivorans DSM 12260]
          Length = 94

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY +    APV+VA G+ ++A+++ +IA E  IP+ E+ +L  +    + +   IP
Sbjct: 10  AAALRYEEGHESAPVVVASGKGVLAERIVEIAREAQIPVVEDAALVSA-LLALELGEEIP 68

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+AVA+++  +Y  
Sbjct: 69  PELYQAVARVLVFVYDL 85


>gi|186477673|ref|YP_001859143.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
 gi|184194132|gb|ACC72097.1| flagellar biosynthetic protein FlhB [Burkholderia phymatum STM815]
          Length = 112

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     ++AP +VAKG  L+A  + + A E  + + E P +  SL  QV ++S I
Sbjct: 9   AAALVYDSHGHDEAPRVVAKGYGLVADMIVQRAKEAGLYVHESPDMV-SLLMQVDLDSRI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPRLYQAVAELLAWLHRLE 86


>gi|253681686|ref|ZP_04862483.1| flagella-associated protein [Clostridium botulinum D str. 1873]
 gi|253561398|gb|EES90850.1| flagella-associated protein [Clostridium botulinum D str. 1873]
          Length = 90

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + AP++ A G   IA K+ + A ++ +P+     LA  L   V + S+IP
Sbjct: 9   AAALKYELNYD-APIVSAAGMGHIADKIVEEAKKNEVPVVYNKELAD-LLTNVDVGSSIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|148270251|ref|YP_001244711.1| FlhB domain-containing protein [Thermotoga petrophila RKU-1]
 gi|170288949|ref|YP_001739187.1| FlhB domain-containing protein [Thermotoga sp. RQ2]
 gi|281412554|ref|YP_003346633.1| FlhB domain protein [Thermotoga naphthophila RKU-10]
 gi|147735795|gb|ABQ47135.1| FlhB domain protein [Thermotoga petrophila RKU-1]
 gi|170176452|gb|ACB09504.1| FlhB domain protein [Thermotoga sp. RQ2]
 gi|281373657|gb|ADA67219.1| FlhB domain protein [Thermotoga naphthophila RKU-10]
          Length = 86

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y  +   AP +VAKG   +A+++ ++A  + IPI E P +   L + + + S IP
Sbjct: 9   AVALKYDPSRTSAPEVVAKGVGEVAERIIEVAKRYGIPIEERPDIIDDLLR-LDLFSEIP 67

Query: 336 PVFYKAVAQLIYKIYH 351
              Y  +A++   +  
Sbjct: 68  EEMYLVIAEIYAFLKR 83


>gi|56421679|ref|YP_148997.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426]
 gi|56381521|dbj|BAD77429.1| flagellar biosynthesis [Geobacillus kaustophilus HTA426]
          Length = 98

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY ++   +P++VA+G   +A+K+ ++A +H++PI E+P L ++L  Q+
Sbjct: 14  MNGPT--AAVIRYDESSGQSPMVVAQGSGHVAQKIIELAKQHHVPIQEDPLLVQNLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDRIPPQLYAVIA 85


>gi|307731337|ref|YP_003908561.1| type III secretion exporter [Burkholderia sp. CCGE1003]
 gi|307585872|gb|ADN59270.1| type III secretion exporter [Burkholderia sp. CCGE1003]
          Length = 123

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q  + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQGGDAAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPQLYQAVAELLAWLHRLE 86


>gi|91785606|ref|YP_560812.1| flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
 gi|91689560|gb|ABE32760.1| Flagellar biosynthetic protein FlhB [Burkholderia xenovorans LB400]
          Length = 119

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q+ + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPQLYQAVAELLAWLHRLE 86


>gi|326791379|ref|YP_004309200.1| type III secretion exporter [Clostridium lentocellum DSM 5427]
 gi|326542143|gb|ADZ84002.1| type III secretion exporter [Clostridium lentocellum DSM 5427]
          Length = 94

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q + +AP +VA G   +A+ + + A +H++P++E+  LA ++  ++ +   IP
Sbjct: 9   AVALSY-QEDMNAPTIVASGSGKVAENILEEAKKHHVPVYEDKKLA-TILAELQVGEQIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VA+++  +
Sbjct: 67  TELYELVAKVLVFV 80


>gi|309703218|emb|CBJ02553.1| type III secretion system protein [Escherichia coli ETEC H10407]
          Length = 130

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60

Query: 318 PSLARSLFKQVPINSAI 334
             LAR ++        +
Sbjct: 61  KKLARKIYATHRRYDYV 77


>gi|78776339|ref|YP_392654.1| FlhB domain-containing protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78496879|gb|ABB43419.1| FlhB domain protein [Sulfurimonas denitrificans DSM 1251]
          Length = 83

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   +  AP +VAKGQ   A+ + KIA  HN+PI ++  L   L  +V ++  +P
Sbjct: 4   AAALRYDVEKEGAPRVVAKGQGRSAENIIKIAQLHNLPIRKDEDLIE-LLSKVELDKEVP 62

Query: 336 PVFYKAVAQLIYKIYH 351
              YKAVA++   IY 
Sbjct: 63  SALYKAVAEVFSFIYK 78


>gi|296157427|ref|ZP_06840262.1| type III secretion exporter [Burkholderia sp. Ch1-1]
 gi|295892199|gb|EFG71982.1| type III secretion exporter [Burkholderia sp. Ch1-1]
          Length = 119

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q+ + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQSGDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPQLYQAVAELLAWLHRLE 86


>gi|307546936|ref|YP_003899415.1| flagellar biosynthesis protein FlhB [Halomonas elongata DSM 2581]
 gi|307218960|emb|CBV44230.1| K04061 flagellar biosynthesis protein [Halomonas elongata DSM 2581]
          Length = 90

 Score = 80.6 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y   E  AP +VA+G   +A+++ + A +H I + + P L   L  Q+ ++ AIP
Sbjct: 10  AVGLAYGDDET-APKVVARGYGELAERIVEQAKQHGIHVHDAPELV-GLLMQLDLDEAIP 67

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+ VA+L+  +
Sbjct: 68  PELYRIVAELLVWL 81


>gi|256024635|ref|ZP_05438500.1| surface presentation of antigens protein SpaS [Escherichia sp.
           4_1_40B]
          Length = 130

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITD 60

Query: 318 PSLARSLFKQVPINSAI 334
             LAR ++        +
Sbjct: 61  KKLARKIYATHRRYDYV 77


>gi|291280386|ref|YP_003497221.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans
           SSM1]
 gi|290755088|dbj|BAI81465.1| flagellar biosynthesis protein FlhB [Deferribacter desulfuricans
           SSM1]
          Length = 90

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 281 YIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYK 340
           Y   ++ AP LVAKGQ LIA+K+ + A EH + I E+P +   +   + +   IP   Y+
Sbjct: 12  YDANKDKAPKLVAKGQGLIAEKIIEKAKEHGVFIKEDPDIVE-ILSTLDLFEEIPDKLYQ 70

Query: 341 AVAQLIYKIYH 351
           A+A ++ ++Y 
Sbjct: 71  AIANILVEVYK 81


>gi|332305476|ref|YP_004433327.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172805|gb|AEE22059.1| type III secretion exporter [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 110

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 276 ALALRYIQTEN-DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+AL++ + +N +AP +VAKG   +A ++  +A +  + I E+P L+  L   + +   I
Sbjct: 15  AVALKHNEGDNKNAPQVVAKGFGELADEIIALAKQSGVLIHEDPYLSEFL-ASLDLGQEI 73

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y  +A+LI   Y
Sbjct: 74  PEELYHVIAELISFSY 89


>gi|196249409|ref|ZP_03148107.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp.
           G11MC16]
 gi|196211166|gb|EDY05927.1| flagellar biosynthesis, FlhS-related protein [Geobacillus sp.
           G11MC16]
          Length = 98

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY +T   AP +VA+G   +A+K+ ++A +H++ I E+P L + L  Q+
Sbjct: 14  MNGPT--AAVIRYDETSGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDRIPPQLYAVIA 85


>gi|83720874|ref|YP_440763.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia thailandensis E264]
 gi|167617543|ref|ZP_02386174.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           thailandensis Bt4]
 gi|257140587|ref|ZP_05588849.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia thailandensis E264]
 gi|83654699|gb|ABC38762.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           thailandensis E264]
          Length = 108

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A  L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ I
Sbjct: 9   AAVLAYDAKGGDSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  +Y  +
Sbjct: 68  PPQLYQAVAELLAWLYALE 86


>gi|331268716|ref|YP_004395208.1| flagella-associated protein [Clostridium botulinum BKT015925]
 gi|329125266|gb|AEB75211.1| flagella-associated protein [Clostridium botulinum BKT015925]
          Length = 90

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    + AP++ A G   IA K+ + A ++ +P+     LA  L   V + S+IP
Sbjct: 9   AAALKYELNYD-APIVSAAGMGRIADKIIEEAKKNEVPVVYNKELAD-LLTNVDVGSSIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  I
Sbjct: 67  EELYNAVAEVIAYI 80


>gi|291562062|emb|CBL40878.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [butyrate-producing bacterium SS3/4]
          Length = 103

 Score = 80.2 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ APV+VA G   +A+K+ + A +  +P++E+ SLA +L  ++ + +A+P
Sbjct: 12  AVALQYSPEKDTAPVIVASGMGYMAEKITEAARKSGVPVYEDDSLA-TLLSRLQLGAAVP 70

Query: 336 PVFYKAVAQLIYKIY 350
              Y+A+ ++   IY
Sbjct: 71  EELYQAIIEI--YIY 83


>gi|238028882|ref|YP_002913113.1| putative flagellar protein FhlB [Burkholderia glumae BGR1]
 gi|237878076|gb|ACR30409.1| Putative flagellar protein FhlB [Burkholderia glumae BGR1]
          Length = 129

 Score = 80.2 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  L+A+ +   A E  + +   P +  SL  QV ++  I
Sbjct: 10  AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARESGLYVHTAPEMV-SLLMQVDLDDRI 68

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  +Y  +
Sbjct: 69  PPALYRAVAELLAWLYALE 87


>gi|150021423|ref|YP_001306777.1| flagellar protein FhlB-like protein [Thermosipho melanesiensis
           BI429]
 gi|149793944|gb|ABR31392.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Thermosipho melanesiensis BI429]
          Length = 89

 Score = 80.2 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           ++ T+    A+AL+Y    +  P +VAKG+  +A+K+ ++A +  +PI     +   LFK
Sbjct: 1   MVYTSREKLAVALKYNPKTDFVPFVVAKGKEEVAEKIMELAKKSGVPIVRSSKIVGELFK 60

Query: 327 QVPINSAIPPVFYKAVAQLIYKIYHKK 353
            + +   IP   Y  +A++I  I  +K
Sbjct: 61  -LNVLEEIPEKMYVVIAEIIAFIQSQK 86


>gi|153956205|ref|YP_001396970.1| hypothetical protein CKL_3609 [Clostridium kluyveri DSM 555]
 gi|219856530|ref|YP_002473652.1| hypothetical protein CKR_3187 [Clostridium kluyveri NBRC 12016]
 gi|146349063|gb|EDK35599.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570254|dbj|BAH08238.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 88

 Score = 80.2 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y  T  +AP++ A G   IA  +   A E N+PI  +  L  +L   V +  +IP
Sbjct: 7   AVALKYEPT-YEAPMVTAAGIGQIADNILNKARESNVPIVYDRELT-NLLSNVDVGDSIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y  VA++I  +
Sbjct: 65  VELYDVVAKVIAYV 78


>gi|87119456|ref|ZP_01075353.1| FlhB domain protein [Marinomonas sp. MED121]
 gi|86164932|gb|EAQ66200.1| FlhB domain protein [Marinomonas sp. MED121]
          Length = 80

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP + AKG  LIA+++ ++A E+NI + + P L   L   + +   IP
Sbjct: 5   AIALNYDF--HGAPTITAKGSGLIAERIMQVAEENNIILHKSPELVEVL-GHLELGDEIP 61

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y AVA++I   +  K
Sbjct: 62  EALYLAVAEIIAFAHSLK 79


>gi|146297151|ref|YP_001180922.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410727|gb|ABP67731.1| cytoplasmic domain of flagellar protein FhlB-like protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 94

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   +  AP ++AKGQ L+A+++ + A E NIPI+ +  +A  LF  + +   IP
Sbjct: 9   AVAIKYD-IKEIAPKVIAKGQGLVAERILEKAKEKNIPIYHDQYIAERLF-NLELQQYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VAQ++  I
Sbjct: 67  EDLYEVVAQILVFI 80


>gi|289523587|ref|ZP_06440441.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503279|gb|EFD24443.1| FlhB domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 100

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY +  + AP ++A G+  IA+K+   A +  IP+ E+  L   L   V +   IP
Sbjct: 13  AAALRYDKKLDSAPRVIASGRGWIAEKIIDEARKRGIPLVEDSLLVSVLLG-VNLGEEIP 71

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA+++  +
Sbjct: 72  EEAYLAVARILVFL 85


>gi|85712296|ref|ZP_01043347.1| Uncharacterized conserved protein, related to C-terminal FlhB
           domain [Idiomarina baltica OS145]
 gi|85693923|gb|EAQ31870.1| Uncharacterized conserved protein, related to C-terminal FlhB
           domain [Idiomarina baltica OS145]
          Length = 91

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y     +AP ++AKG + +A+++ ++A  H + + E+P L+ SL  ++ +   IP
Sbjct: 9   AIGLSYD--GLNAPQVIAKGFDELAEEIIEVAKAHGVMVHEDPMLSDSL-ARLNVGEEIP 65

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI   Y
Sbjct: 66  RELYVLIAELIAFSY 80


>gi|167579446|ref|ZP_02372320.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           thailandensis TXDOH]
          Length = 108

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A  L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ I
Sbjct: 9   AAVLAYDAKGGDSAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  +Y  +
Sbjct: 68  PPQLYQAVAELLAWLYALE 86


>gi|127512324|ref|YP_001093521.1| FlhB domain-containing protein [Shewanella loihica PV-4]
 gi|126637619|gb|ABO23262.1| FlhB domain protein [Shewanella loihica PV-4]
          Length = 118

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PT  A ALRY      AP + AKG++L+A+++  IA E  I I ++ +L+  L +++ I 
Sbjct: 23  PTQ-AAALRYDGKL--APQITAKGEDLVAEEIIAIAKEAGIYIHQDANLSNFL-QKLEIG 78

Query: 332 SAIPPVFYKAVAQLIYKIY 350
             IP   Y  +A+LI  +Y
Sbjct: 79  EEIPKELYLLIAELIAFVY 97


>gi|157961216|ref|YP_001501250.1| FlhB domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157846216|gb|ABV86715.1| FlhB domain protein [Shewanella pealeana ATCC 700345]
          Length = 102

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP + AKG++ +A+++  +A +  IPI ++  L   L +++ +   IP
Sbjct: 10  AVALSYQPGT--APKVSAKGEDRLAEEIIALAQQAGIPIHQDEYLCDFL-QRLEVGDEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI  +Y
Sbjct: 67  SELYLLIAELIAFVY 81


>gi|221199692|ref|ZP_03572735.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2M]
 gi|221208703|ref|ZP_03581703.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2]
 gi|221215527|ref|ZP_03588490.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD1]
 gi|221164515|gb|EED96998.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD1]
 gi|221171514|gb|EEE03961.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2]
 gi|221179931|gb|EEE12335.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           multivorans CGD2M]
          Length = 105

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG   +A+ +   A E  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKEAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYAL 85


>gi|167568373|ref|ZP_02361247.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis
           C6786]
          Length = 107

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A  L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ I
Sbjct: 9   AAVLAYDAKGGDAAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  +Y  +
Sbjct: 68  PPQLYQAVAELLAWLYALE 86


>gi|167561155|ref|ZP_02354071.1| putative flagellar biosynthesis protein [Burkholderia oklahomensis
           EO147]
          Length = 105

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A  L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ I
Sbjct: 9   AAVLAYDAKGGDAAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  +Y  +
Sbjct: 68  PPQLYQAVAELLAWLYALE 86


>gi|119476289|ref|ZP_01616640.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine
           gamma proteobacterium HTCC2143]
 gi|119450153|gb|EAW31388.1| uncharacterized flagellar protein FhlB cytoplasmic domain [marine
           gamma proteobacterium HTCC2143]
          Length = 113

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           P   A +L+Y    + AP++ A G   +A+++  IA +H IP+FE  +L   L   + + 
Sbjct: 9   PEKKAASLQYD--GSGAPIVSAAGSGEVAEQIIAIARQHEIPLFENEALLE-LLVNIGVG 65

Query: 332 SAIPPVFYKAVAQLIYKIYHKK 353
             IP   Y  +AQ+I   Y  +
Sbjct: 66  EEIPESLYLCIAQVIAFAYKIQ 87


>gi|53724870|ref|YP_104758.1| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei ATCC 23344]
 gi|67641500|ref|ZP_00440277.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|167001486|ref|ZP_02267281.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei PRL-20]
 gi|254174894|ref|ZP_04881555.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei ATCC 10399]
 gi|254359693|ref|ZP_04975964.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei 2002721280]
 gi|262193313|ref|YP_001082911.2| flagellar biosynthetic protein FlhB domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|52428293|gb|AAU48886.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei ATCC 23344]
 gi|148028907|gb|EDK86839.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei 2002721280]
 gi|160695939|gb|EDP85909.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei ATCC 10399]
 gi|238522443|gb|EEP85887.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|243062693|gb|EES44879.1| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei PRL-20]
 gi|261825984|gb|ABN01805.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei NCTC 10229]
 gi|261835037|gb|ABO04245.2| flagellar biosynthetic protein FlhB domain protein [Burkholderia
           mallei NCTC 10247]
          Length = 95

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 279 LRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ IPP 
Sbjct: 2   LAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIPPQ 60

Query: 338 FYKAVAQLIYKIYHKK 353
            Y+AVA+L+  +Y  +
Sbjct: 61  LYQAVAELLAWLYALE 76


>gi|330818617|ref|YP_004362322.1| Flagellar protein FhlB [Burkholderia gladioli BSR3]
 gi|327371010|gb|AEA62366.1| Flagellar protein FhlB [Burkholderia gladioli BSR3]
          Length = 118

 Score = 79.1 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  L+A+ +   A E  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARAREAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  +Y  +
Sbjct: 68  PPALYQAVAELLAWLYALE 86


>gi|312622764|ref|YP_004024377.1| type iii secretion exporter [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203231|gb|ADQ46558.1| type III secretion exporter [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 92

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   E+ AP ++AKG+  +A+++ + A + +IP++E+  +A  LF  + +   IP
Sbjct: 9   AVAIKYDL-EDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVAEKLF-NLELQEYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y+ +AQ++  I
Sbjct: 67  EDLYEVIAQILVFI 80


>gi|255528146|ref|ZP_05394973.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|255508159|gb|EET84572.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
          Length = 87

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY Q   +APV+ A G   +A K+ + A + N+PI  +  L   L   V +  +IP
Sbjct: 7   AAALRYEQG-YEAPVVTAAGMGYVADKIIENAEKANVPIVYDKELTD-LLSSVDVGDSIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  +
Sbjct: 65  FELYDAVAKVIAYV 78


>gi|226944518|ref|YP_002799591.1| flagellar protein [Azotobacter vinelandii DJ]
 gi|226719445|gb|ACO78616.1| flagellar protein [Azotobacter vinelandii DJ]
          Length = 94

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ALAL Y    + AP +VAKG   +A+++   A+   +P+   P L   L  QV +++ IP
Sbjct: 11  ALALSY-AEGDAAPRVVAKGYGRLAERIVAEAHRQGVPVHAAPELV-GLLMQVDLDAQIP 68

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+ VA+L+   Y  +
Sbjct: 69  PQLYQVVAELLVWAYGLE 86


>gi|149194925|ref|ZP_01872018.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus
           TB-2]
 gi|149134846|gb|EDM23329.1| flagellar basal body protein FlhB [Caminibacter mediatlanticus
           TB-2]
          Length = 92

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A ALRY   E+ AP ++AKG+  IA+K+ + A E +IP+F+   L  SL K    N  IP
Sbjct: 9   AAALRYKAYEDLAPKVIAKGKGEIAEKIIQKAKEFDIPLFQNEELVDSLLKID--NDTIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  YKAV ++   +Y  +
Sbjct: 67  PELYKAVVEVFIWLYKME 84


>gi|222528969|ref|YP_002572851.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455816|gb|ACM60078.1| flagellar protein FhlB-like protein [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 92

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y   E+ AP ++AKG+  +A+++ + A + +IP++E+  +   LF  + +   IP
Sbjct: 9   AVAIKYDL-EDIAPKIIAKGKGYVAERIIEKAKQEDIPVYEDQKVVEKLF-NLELQEYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VAQ++  I
Sbjct: 67  EDLYEVVAQILVFI 80


>gi|83309712|ref|YP_419976.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Magnetospirillum magneticum AMB-1]
 gi|82944553|dbj|BAE49417.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Magnetospirillum magneticum AMB-1]
          Length = 117

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL         P + A G+  +A+++ ++A+ H + +  +P LA  L   V +++ IP 
Sbjct: 29  VALADDPDHPGLPTVTASGRGAVAEQILQLAFAHGVKVRTDPDLAEVL-AAVEVDTVIPV 87

Query: 337 VFYKAVAQLIYKIYH 351
             + AVA+++  +Y 
Sbjct: 88  EAFVAVAEILAYVYR 102


>gi|213422289|ref|ZP_03355355.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 103

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 45/97 (46%)

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
               R + D + I+  +  L  +A   ++P +   ++  + S ++    + +   ++P F
Sbjct: 7   HFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKF 66

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITI 164
            +++   GIKR++S       +K+ +K  LVG +   
Sbjct: 67  SKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGF 103


>gi|218672785|ref|ZP_03522454.1| flagellar biosynthesis protein FlhB [Rhizobium etli GR56]
          Length = 124

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
          M+++D  D+KTEAP++KK  DA  +GN P SRE S+F++ILA  IYL+FF    + +   
Sbjct: 1  MADDD-KDSKTEAPTAKKQSDAAEKGNVPFSRELSIFATILATFIYLVFFLPESVGAHER 59

Query: 61 DLHVLLASAT 70
          +    L ++ 
Sbjct: 60 NAARYLQASL 69


>gi|138896706|ref|YP_001127159.1| flagellar biosynthesis, FlhS-like protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268219|gb|ABO68414.1| Flagellar biosynthesis, FlhS-related protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 98

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY +    AP +VA+G   +A+K+ ++A +H++ I E+P L + L  Q+
Sbjct: 14  MNGPT--AAVIRYNEASGQAPTVVAQGSGHVAQKIIELAKQHHVHIQEDPLLVQHLL-QL 70

Query: 329 PINSAIPPVFYKAVA 343
            +   IPP  Y  +A
Sbjct: 71  DLGDCIPPQLYAVIA 85


>gi|307718745|ref|YP_003874277.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM
           6192]
 gi|306532470|gb|ADN02004.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM
           6192]
          Length = 104

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y      AP ++AKG+   A  +  +A EH IP+ E   +AR  +      + +P
Sbjct: 16  AVAMKYTPEL-PAPFVIAKGRGKTADLILDLAREHRIPVVEHR-IAREGYDLFLPGTYVP 73

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ VA +   +Y
Sbjct: 74  EDLYEVVATIFAFVY 88


>gi|323527687|ref|YP_004229840.1| type III secretion exporter [Burkholderia sp. CCGE1001]
 gi|323384689|gb|ADX56780.1| type III secretion exporter [Burkholderia sp. CCGE1001]
          Length = 122

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAHGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  ++  +
Sbjct: 68  PPQLYQAVAELLAWLHRLE 86


>gi|187925735|ref|YP_001897377.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
           PsJN]
 gi|187716929|gb|ACD18153.1| flagellar biosynthetic protein FlhB [Burkholderia phytofirmans
           PsJN]
          Length = 119

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  Q  + AP ++AKG  ++A+ + + A E  + + E P +  SL  QV +++ I
Sbjct: 9   AAALVYDAQGSDPAPRVIAKGYGMLAEMIVQRAKEAGLYVHEAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+++  ++  +
Sbjct: 68  PPQLYQAVAEMLAWLHRLE 86


>gi|115353155|ref|YP_774994.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD]
 gi|115283143|gb|ABI88660.1| putative flagellar protein FhlB [Burkholderia ambifaria AMMD]
          Length = 106

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYSL 85


>gi|317128463|ref|YP_004094745.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
 gi|315473411|gb|ADU30014.1| type III secretion exporter [Bacillus cellulosilyticus DSM 2522]
          Length = 99

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           I  PT  A  +RY +   + P +VA+G+  +A+K+  +A E+ IP+ E+  L  SL   +
Sbjct: 15  INGPT--AAVIRYDEASGEEPKVVAQGKGHVAQKILALAKENGIPMEEDTHLLESLL-DM 71

Query: 329 PINSAIPPVFYKAVAQLIYKI 349
            +   IPP  Y  +A+++  I
Sbjct: 72  DLGENIPPQLYSVMAEILLFI 92


>gi|161526225|ref|YP_001581237.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC
           17616]
 gi|189349061|ref|YP_001944689.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
           17616]
 gi|160343654|gb|ABX16740.1| putative flagellar protein FhlB [Burkholderia multivorans ATCC
           17616]
 gi|189333083|dbj|BAG42153.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
           17616]
          Length = 105

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG   +A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYAL 85


>gi|217031730|ref|ZP_03437234.1| hypothetical protein HPB128_155g43 [Helicobacter pylori B128]
 gi|298737133|ref|YP_003729663.1| flagellar biosynthesis protein [Helicobacter pylori B8]
 gi|216946577|gb|EEC25177.1| hypothetical protein HPB128_155g43 [Helicobacter pylori B128]
 gi|298356327|emb|CBI67199.1| flagellar biosynthesis protein [Helicobacter pylori B8]
          Length = 90

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A+AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAVALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++  IP   Y++V Q+   +
Sbjct: 60  LDCTIPEELYESVVQVFLWL 79


>gi|313903321|ref|ZP_07836713.1| type III secretion exporter [Thermaerobacter subterraneus DSM
           13965]
 gi|313466409|gb|EFR61931.1| type III secretion exporter [Thermaerobacter subterraneus DSM
           13965]
          Length = 174

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
            P   A ALR+    + AP +VA G   +A+ + + A E  +P    P LA  L  +VP 
Sbjct: 16  PPQRAAAALRFDPGTDPAPRVVAAGFGTMAEAILRRAREAGVPEVTSP-LAPVL-ARVPP 73

Query: 331 NSAIPPVFYKAVAQLIY 347
             AIP   ++ VA+++ 
Sbjct: 74  GQAIPAALFEVVARIMA 90


>gi|167835063|ref|ZP_02461946.1| putative flagellar biosynthesis protein [Burkholderia thailandensis
           MSMB43]
          Length = 108

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A  L Y  +  + AP +VAKG  L+A+++ + A +  + +   P +  SL  QV +++ I
Sbjct: 9   AAVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA+L+  +Y  +
Sbjct: 68  PPQLYRAVAELLAWLYALE 86


>gi|300870471|ref|YP_003785342.1| flagellar biosynthesis protein FlhB [Brachyspira pilosicoli
           95/1000]
 gi|300688170|gb|ADK30841.1| flagellar biosynthesis protein, FlhB [Brachyspira pilosicoli
           95/1000]
          Length = 86

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y +  ++AP++++KG+ L+AK+M +IA ++ +PI  +    + L   + I   IP
Sbjct: 8   AVALLYEREIHNAPIVISKGEKLLAKRMIEIAKKNKVPIVSDEDTVKELMH-LEIGEEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+AV+ ++  +Y  K
Sbjct: 67  YSVYEAVSIILKYVYKLK 84


>gi|134297235|ref|YP_001120970.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4]
 gi|134140392|gb|ABO56135.1| putative flagellar protein FhlB [Burkholderia vietnamiensis G4]
          Length = 105

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  L+A  + + A +  + +   P +  SL  QV ++  I
Sbjct: 7   AAALVYDPKGGDAAPRVVAKGYGLVADMIVERARDAGLYVHTAPEMV-SLLMQVDLDDRI 65

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 66  PPQLYQAVADLLAWLYAL 83


>gi|209964217|ref|YP_002297132.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
           centenum SW]
 gi|209957683|gb|ACI98319.1| flagellar biosynthetic protein FlhB, putative [Rhodospirillum
           centenum SW]
          Length = 104

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+ALR+       P +VA G   +A+++ ++A+   + + E+  LA  +   + ++S I
Sbjct: 12  VAVALRHQPGGESLPRIVASGHGAVAEQILEMAFAAGVKVREDADLAE-ILSALDLDSEI 70

Query: 335 PPVFYKAVAQLIYKIYH 351
           P     AVA+++  +Y 
Sbjct: 71  PLEAIAAVAEILAYVYR 87


>gi|171317301|ref|ZP_02906498.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5]
 gi|171097562|gb|EDT42399.1| putative flagellar protein FhlB [Burkholderia ambifaria MEX-5]
          Length = 106

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYSL 85


>gi|78067877|ref|YP_370646.1| putative flagellar protein FhlB [Burkholderia sp. 383]
 gi|77968622|gb|ABB10002.1| putative flagellar protein FhlB [Burkholderia sp. 383]
          Length = 105

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG   +A+ +   A++  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYSL 85


>gi|217033813|ref|ZP_03439238.1| hypothetical protein HP9810_877g17 [Helicobacter pylori 98-10]
 gi|216943711|gb|EEC23154.1| hypothetical protein HP9810_877g17 [Helicobacter pylori 98-10]
 gi|317178297|dbj|BAJ56086.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           F16]
 gi|317179776|dbj|BAJ57564.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           F30]
          Length = 90

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A+AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAVALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|158321501|ref|YP_001514008.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs]
 gi|158141700|gb|ABW20012.1| flagellar biosynthesis protein [Alkaliphilus oremlandii OhILAs]
          Length = 98

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y    + APV+ A G  ++A K+ +   E+ + I+E+  L + L  Q  + + IP
Sbjct: 10  AVAIKYDVENDRAPVITASGMGVVADKIIEKGMENEVAIYEDERLVKELI-QFKVGTEIP 68

Query: 336 PVFYKAVAQLIYKI 349
           P  Y+ VAQ++  I
Sbjct: 69  PELYEIVAQVLVFI 82


>gi|312127964|ref|YP_003992838.1| type iii secretion exporter [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777983|gb|ADQ07469.1| type III secretion exporter [Caldicellulosiruptor hydrothermalis
           108]
          Length = 92

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E+ AP +VAKG+  +A+K+ + A + +IP++E+ ++A  LF  + +   IP   Y+ VAQ
Sbjct: 17  EDIAPKVVAKGKGYVAEKIVEKAKQEDIPVYEDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75

Query: 345 LIYKI 349
           ++  I
Sbjct: 76  ILVFI 80


>gi|160939648|ref|ZP_02086996.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437439|gb|EDP15203.1| hypothetical protein CLOBOL_04540 [Clostridium bolteae ATCC
           BAA-613]
          Length = 130

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY   E+ +PV++A G   +A+ +  IA +  IP+F++ S A SL   + + S IP
Sbjct: 9   AVALRYNVDEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGSNIP 67

Query: 336 PVFYKAVAQL 345
              Y+ VA +
Sbjct: 68  VELYEVVAAI 77


>gi|172057901|ref|YP_001814361.1| hypothetical protein Exig_1892 [Exiguobacterium sibiricum 255-15]
 gi|171990422|gb|ACB61344.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15]
          Length = 86

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   +  AP +VAKG   +A+++ + A +HNIPI E+ +L  +L   V ++  IP
Sbjct: 4   AIALSYE-EQMQAPKVVAKGSERVAERILEEALQHNIPIREDATLI-TLLNTVQVSEQIP 61

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  +A+L   +Y  
Sbjct: 62  NELYGVIAELFAFLYQL 78


>gi|150388629|ref|YP_001318678.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF]
 gi|149948491|gb|ABR47019.1| flagellar biosynthesis protein [Alkaliphilus metalliredigens QYMF]
          Length = 96

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y    + AP + A GQ ++A+++ + A E+++ I+ +  L + L  +  + + IP
Sbjct: 10  AIALQYDVERDHAPRITAAGQGMMAERILERAEENDVAIYHDERLVKELI-EFKVGTEIP 68

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VAQ++  I
Sbjct: 69  TELYEVVAQVLVFI 82


>gi|262360425|gb|ACY57146.1| type III secretion apparatus protein [Yersinia pestis D106004]
          Length = 139

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            K E P+ K++++A  +G    S E +    ++A +IY L       YS+      L+ S
Sbjct: 4   EKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTG----YSLVEQAKALIRS 59

Query: 69  ATQRKLEDISHIVFLLTHLSLSASR-LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           +  +  + ++  +  +    ++    +V+      ++  I + + Q  P+L    V    
Sbjct: 60  SIIQLQQPLTLALARIGAECMTVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKG 119

Query: 128 KRVSLREGIKR 138
           +R++  + +  
Sbjct: 120 ERITPFKMLNN 130


>gi|325526461|gb|EGD04041.1| putative flagellar protein FhlB [Burkholderia sp. TJI49]
          Length = 105

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG   +A+ +   A++  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGALAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYAL 85


>gi|312878031|ref|ZP_07737969.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795183|gb|EFR11574.1| flagellar protein FhlB-like protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 94

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E+ AP +VAKG+  +A+K+ + A + +IP++E+ S+A  LF  + +   IP   Y+ VAQ
Sbjct: 17  EDIAPKIVAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVVAQ 75

Query: 345 LIYKI 349
           ++  I
Sbjct: 76  ILVFI 80


>gi|170699624|ref|ZP_02890662.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10]
 gi|170135440|gb|EDT03730.1| putative flagellar protein FhlB [Burkholderia ambifaria IOP40-10]
          Length = 106

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYAL 85


>gi|212640409|ref|YP_002316929.1| hypothetical protein Aflv_2591 [Anoxybacillus flavithermus WK1]
 gi|212561889|gb|ACJ34944.1| Uncharacterized protein containing cytoplasmic domain of flagellar
           protein FhlB [Anoxybacillus flavithermus WK1]
          Length = 95

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A  +RY Q  + AP +VA G+  +A+K+ ++A ++ +PI ++ +L + L   + +   IP
Sbjct: 17  AAVIRYEQG-DKAPTVVAHGRGYVAEKIIELAKQNGVPIEQDAALVQHLL-DLDLGDTIP 74

Query: 336 PVFYKAVAQLI 346
           P  Y  +A+++
Sbjct: 75  PQLYAVIAEIL 85


>gi|172062010|ref|YP_001809662.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6]
 gi|171994527|gb|ACB65446.1| putative flagellar protein FhlB [Burkholderia ambifaria MC40-6]
          Length = 106

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  L+A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGLLAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYAL 85


>gi|556364|gb|AAA50308.1| flhB [Proteus mirabilis]
          Length = 74

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 312 IPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           IP+ E P LAR+L++   I  AIP   Y AVA+++  +Y  +
Sbjct: 1   IPLLEAPPLARALYRHSEIGQAIPATLYAAVAEVLAWVYQLR 42


>gi|217077929|ref|YP_002335647.1| flagellar biosynthesis [Thermosipho africanus TCF52B]
 gi|217037784|gb|ACJ76306.1| flagellar biosynthesis [Thermosipho africanus TCF52B]
          Length = 75

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL+Y    +  P ++AKG+  +AKK+ +IA +  +PI +   L   L+K + +   IP 
Sbjct: 1   MALKYDPKVDFVPFVIAKGKEEVAKKILEIAKKSGVPIVKSSELVDELYK-LKVLEEIPK 59

Query: 337 VFYKAVAQLIYKI 349
             Y AVA++I  +
Sbjct: 60  KLYLAVAEIIVFL 72


>gi|170726000|ref|YP_001760026.1| FlhB domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169811347|gb|ACA85931.1| FlhB domain protein [Shewanella woodyi ATCC 51908]
          Length = 104

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL +    N+AP + AKG  LIA+++  +A E  I I +   L+  L + + +  
Sbjct: 9   TQQAVALGFD--GNNAPKVTAKGSGLIAEEIISVAKEAGIHIHKNADLSNFL-QNLELGD 65

Query: 333 AIPPVFYKAVAQLIYKIY 350
            IP   Y  +A++I   Y
Sbjct: 66  EIPKELYLLIAEIIAFAY 83


>gi|157376171|ref|YP_001474771.1| FlhB domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318545|gb|ABV37643.1| FlhB domain protein [Shewanella sediminis HAW-EB3]
          Length = 111

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL +       P + AKG  L+A+++  +A E  + I + P L+  L +++ +   IP
Sbjct: 19  AVALGFDGQHT--PTVTAKGTGLVAEEIIALAEEAGVHIHKNPHLSDFL-QRLELGEEIP 75

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI  +Y
Sbjct: 76  KELYFLIAELIAFVY 90


>gi|312793166|ref|YP_004026089.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180306|gb|ADQ40476.1| type III secretion exporter [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 94

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           E+ AP ++AKG+  +A+K+ + A + +IP++E+ S+A  LF  + +   IP   Y+ VAQ
Sbjct: 17  EDIAPKIIAKGKGYVAEKIIEKAKDEDIPVYEDQSIAEKLF-NLELQEYIPEDLYEVVAQ 75

Query: 345 LIYKI 349
           ++  I
Sbjct: 76  ILVFI 80


>gi|288958046|ref|YP_003448387.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Azospirillum sp. B510]
 gi|288910354|dbj|BAI71843.1| flagellar protein FhlB cytoplasmic domain-containing protein
           [Azospirillum sp. B510]
          Length = 119

 Score = 76.4 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            A+AL+Y       P +VA G+  +A+++ ++A+ + + + E+  L   +   + ++S I
Sbjct: 24  VAVALKYQLGTETLPRIVATGKGTVAEQILELAFANGVKVREDADLVE-ILSAIEVDSDI 82

Query: 335 PPVFYKAVAQLIYKIYH 351
           P     AVA+++  +Y 
Sbjct: 83  PVEAIAAVAEILAHVYR 99


>gi|120598277|ref|YP_962851.1| FlhB domain-containing protein [Shewanella sp. W3-18-1]
 gi|120558370|gb|ABM24297.1| FlhB domain protein [Shewanella sp. W3-18-1]
          Length = 103

 Score = 76.4 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N T  A+AL Y +    AP +VA G+ LIA+++  +A E  + I ++  L+  L + + +
Sbjct: 6   NKTKQAVALSYDRK--HAPKIVATGEGLIAEEIIALAKESGVYIHQDAHLSNFL-RLLEL 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y  +A+LI  +Y
Sbjct: 63  GEEIPKELYILIAELIAFVY 82


>gi|308062858|gb|ADO04746.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           Cuz20]
          Length = 90

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++  IP   Y++V Q+   +
Sbjct: 60  LDCTIPEELYESVVQVFLWL 79


>gi|320536637|ref|ZP_08036655.1| FlhB domain protein [Treponema phagedenis F0421]
 gi|320146513|gb|EFW38111.1| FlhB domain protein [Treponema phagedenis F0421]
          Length = 104

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +    T  + AL Y    + AP++VAKG+  IA+K+ +IA +H++PI ++  LA  L +Q
Sbjct: 1   MTKKKTPCSAALSYTLG-SSAPIIVAKGKGQIAEKILEIADKHSVPIIQDTILAEILSEQ 59

Query: 328 VPINSAIPPVFYKAVAQLIYKI 349
             I + IP   Y+AVA +   +
Sbjct: 60  -QIGACIPDETYQAVAAIFAFL 80


>gi|167585157|ref|ZP_02377545.1| putative flagellar protein FhlB [Burkholderia ubonensis Bu]
          Length = 105

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 276 ALALRYI-QTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y  +  + AP ++AKG   +A+ +   A +  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDAKGGDAAPRVIAKGYGAVAEMIVARARDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           PP  Y+AVA L+  +Y  +
Sbjct: 68  PPQLYQAVADLLAWLYALE 86


>gi|312134792|ref|YP_004002130.1| type iii secretion exporter [Caldicellulosiruptor owensensis OL]
 gi|311774843|gb|ADQ04330.1| type III secretion exporter [Caldicellulosiruptor owensensis OL]
          Length = 92

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           ++ AP ++AKG+  +A+K+ + A +  IP+FE   +A  LF  + +   IP   Y+ VAQ
Sbjct: 17  KDIAPKVIAKGKGYVAEKIIEKAKQEEIPVFEHKDVAEKLF-SLELQEYIPEDLYEVVAQ 75

Query: 345 LIYKI 349
           ++  I
Sbjct: 76  ILVFI 80


>gi|302872175|ref|YP_003840811.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47]
 gi|302575034|gb|ADL42825.1| type III secretion exporter [Caldicellulosiruptor obsidiansis OB47]
          Length = 92

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQ 344
           ++ AP +VAKG+  +A+K+ + A + NIP++++ ++A  LF  + +   IP   Y+ VAQ
Sbjct: 17  KDIAPKVVAKGKGYVAEKIIEKAKQENIPVYKDQNVAEKLF-NLELQEYIPEDLYEVVAQ 75

Query: 345 LIYKI 349
           ++  I
Sbjct: 76  ILVFI 80


>gi|210135753|ref|YP_002302192.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           P12]
 gi|210133721|gb|ACJ08712.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           P12]
 gi|317011812|gb|ADU85559.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           SouthAfrica7]
          Length = 90

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++  IP   Y++V Q+   +
Sbjct: 60  LDCTIPEELYESVVQVFLWL 79


>gi|207093353|ref|ZP_03241140.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|207108746|ref|ZP_03242908.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 90

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E+NI +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYNIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|188528367|ref|YP_001911054.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           Shi470]
 gi|188144607|gb|ACD49024.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           Shi470]
 gi|308064357|gb|ADO06244.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           Sat464]
          Length = 90

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|315585981|gb|ADU40362.1| FlhB domain protein [Helicobacter pylori 35A]
 gi|332674386|gb|AEE71203.1| FlhB domain protein [Helicobacter pylori 83]
          Length = 90

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTTKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIVLFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|116328316|ref|YP_798036.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331042|ref|YP_800760.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121060|gb|ABJ79103.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124731|gb|ABJ76002.1| FhlB-related protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 90

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            ++AL++I  +++APV+ A    L+   +RKIA ++++P+ E+  LA SLF ++P+ S I
Sbjct: 2   ISVALKFIPQKDNAPVITASASGLLGDVIRKIANKNSVPVVEDSVLAESLF-ELPVGSEI 60

Query: 335 PPVFYKAVAQLIYKIYHK 352
           P   Y+AV  +   I   
Sbjct: 61  PENLYRAVGAIFSMILEL 78


>gi|24374711|ref|NP_718754.1| FlhB domain-containing protein [Shewanella oneidensis MR-1]
 gi|24349369|gb|AAN56198.1|AE015758_2 FlhB domain protein [Shewanella oneidensis MR-1]
          Length = 102

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y      AP +VA G+ L+A ++  +A    + I ++P L+  L + + +  
Sbjct: 7   TQQAVALSYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLELGE 63

Query: 333 AIPPVFYKAVAQLIYKIY 350
            IP   Y  +A+LI  +Y
Sbjct: 64  EIPRELYLLIAELIAFVY 81


>gi|308183730|ref|YP_003927857.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           PeCan4]
 gi|308065915|gb|ADO07807.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           PeCan4]
          Length = 90

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNIGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|291277367|ref|YP_003517139.1| putative flagellar biosynthesis protein flhB2 [Helicobacter
           mustelae 12198]
 gi|290964561|emb|CBG40414.1| putative flagellar biosynthesis protein flhB2 [Helicobacter
           mustelae 12198]
          Length = 89

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y   +N AP +VA G+  IA+++ + A E+++P+F   +L  SL   + I+S IP
Sbjct: 4   AAALAYAPYQNSAPKVVASGKGTIAEQIIQKAREYDVPLFSNTALVDSLIG-IEIDSQIP 62

Query: 336 PVFYKAVAQLIYKIYH 351
           P  Y+ V ++   + H
Sbjct: 63  PELYQGVVEVFIWLEH 78


>gi|209920313|ref|YP_002294397.1| putative type III secretion protein [Escherichia coli SE11]
 gi|209913572|dbj|BAG78646.1| putative type III secretion protein [Escherichia coli SE11]
          Length = 130

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I+NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60

Query: 318 PSLARSLFKQVPINSAI 334
             LAR  +        +
Sbjct: 61  KKLARKNYATHRRYDYV 77


>gi|256019343|ref|ZP_05433208.1| surface presentation of antigens protein SpaS [Shigella sp. D9]
          Length = 130

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%)

Query: 258 MMEATSRATIIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEE 317
           M    S + ++I+NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +
Sbjct: 1   MKSDVSNSRLMISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITD 60

Query: 318 PSLARSLFKQVPINSAI 334
             LAR  +        +
Sbjct: 61  KKLARKNYATHRRYDYV 77


>gi|217972643|ref|YP_002357394.1| FlhB domain-containing protein [Shewanella baltica OS223]
 gi|217497778|gb|ACK45971.1| FlhB domain-containing protein [Shewanella baltica OS223]
          Length = 102

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +AP +VA G+ LIA+++  +A  + + I ++P L+  L + + +   IP
Sbjct: 10  AVALSYD--GRNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFL-QLLELGEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI  +Y
Sbjct: 67  KELYVLIAELIAFVY 81


>gi|88800022|ref|ZP_01115593.1| FlhB domain protein [Reinekea sp. MED297]
 gi|88777300|gb|EAR08504.1| FlhB domain protein [Reinekea sp. MED297]
          Length = 112

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A  L+Y   +   P++ A G+N  A++M ++A    +P++E+  LA ++  Q+ +  
Sbjct: 6   TTRAATLKYKGRKT--PIISALGKNEQAEEMIQLAKACGVPVYEDEDLA-AILSQLDVGQ 62

Query: 333 AIPPVFYKAVAQLIYKIY 350
           AIP   Y+ VA ++   +
Sbjct: 63  AIPAELYEWVASVLAFAF 80


>gi|261838862|gb|ACX98628.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           51]
 gi|297380750|gb|ADI35637.1| FlhB domain protein [Helicobacter pylori v225d]
          Length = 90

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|302873574|ref|YP_003842207.1| type III secretion exporter [Clostridium cellulovorans 743B]
 gi|307688245|ref|ZP_07630691.1| type III secretion exporter [Clostridium cellulovorans 743B]
 gi|302576431|gb|ADL50443.1| type III secretion exporter [Clostridium cellulovorans 743B]
          Length = 88

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y Q     P++ A+G   +A+K+ + A E+++PI     +A  L   V +  +IP
Sbjct: 7   AAALKYEQGYES-PIVAAQGVGYVAEKIVEKADENDVPIVYNKEMAD-LLTNVDVGDSIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA+++  I
Sbjct: 65  EELYAAVAEIMAHI 78


>gi|15646182|ref|NP_208366.1| ABC transporter, putative [Helicobacter pylori 26695]
 gi|308185362|ref|YP_003929495.1| ABC transporter, putative [Helicobacter pylori SJM180]
 gi|2314760|gb|AAD08615.1| ABC transporter, putative [Helicobacter pylori 26695]
 gi|308061282|gb|ADO03178.1| ABC transporter, putative [Helicobacter pylori SJM180]
          Length = 90

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|317010266|gb|ADU80846.1| hypothetical protein HPIN_08350 [Helicobacter pylori India7]
          Length = 90

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V ++ AIP
Sbjct: 7   AAALAYNMGQDHAPKVIASGVGEVAKRIIQKAREYDIALFSNPMLVDSLLK-VELDCAIP 65

Query: 336 PVFYKAVAQLIYKI 349
              Y++V Q+   +
Sbjct: 66  EELYESVVQVFLWL 79


>gi|188595909|pdb|2VT1|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of Spa40, The
           Specificity Switch For The Shigella Flexneri Type Iii
           Secretion System
          Length = 93

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPIN 331
           PTH A+ + +      AP +     N  A  +RK A E  IP   +  LAR L+K     
Sbjct: 1   PTHIAIGIYFNPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKY 60

Query: 332 SAIPPVFYKAVAQLIYKIYH 351
           S +       V +LI  +  
Sbjct: 61  SFVDFEHLDEVLRLIVWLEQ 80


>gi|109948156|ref|YP_665384.1| putative flagellar biosynthesis protein [Helicobacter acinonychis
           str. Sheeba]
 gi|109715377|emb|CAK00385.1| putative flagellar biosynthesis protein [Helicobacter acinonychis
           str. Sheeba]
          Length = 90

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++S IP   Y++V Q+   +
Sbjct: 60  LDSVIPEELYESVVQVFLWL 79


>gi|15612548|ref|NP_224201.1| putative flagellar biosynthesis protein [Helicobacter pylori J99]
 gi|108563949|ref|YP_628265.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           HPAG1]
 gi|208435454|ref|YP_002267120.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           G27]
 gi|254780106|ref|YP_003058213.1| hypothetical protein HELPY_1578 [Helicobacter pylori B38]
 gi|2440007|gb|AAC45665.1| AbcB [Helicobacter pylori]
 gi|4156117|gb|AAD07068.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
 gi|107837722|gb|ABF85591.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           HPAG1]
 gi|208433383|gb|ACI28254.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           G27]
 gi|254002019|emb|CAX30278.1| Conserved hypothetical protein; putative flagellar biosynthetic
           protein flhB [Helicobacter pylori B38]
 gi|261840268|gb|ACY00034.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           52]
 gi|317013390|gb|ADU83998.1| hypothetical protein HPLT_08135 [Helicobacter pylori Lithuania75]
 gi|317181277|dbj|BAJ59063.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           F32]
 gi|317182800|dbj|BAJ60584.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           F57]
          Length = 90

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|167949067|ref|ZP_02536141.1| flagellar biosynthesis protein FlhB [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 59

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVT 59
          M+EN     KTE P++K++ D+  +G  P SRE +  +  L  +I L+        +  
Sbjct: 1  MAENKDGQEKTEQPTAKRMSDSRRKGQVPRSRELNTMAVTLGGVITLVMMSGHFAQAAA 59


>gi|107023990|ref|YP_622317.1| flagellar protein FhlB [Burkholderia cenocepacia AU 1054]
 gi|116691077|ref|YP_836700.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424]
 gi|170734411|ref|YP_001766358.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3]
 gi|254246929|ref|ZP_04940250.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184]
 gi|105894179|gb|ABF77344.1| putative flagellar protein FhlB [Burkholderia cenocepacia AU 1054]
 gi|116649166|gb|ABK09807.1| putative flagellar protein FhlB [Burkholderia cenocepacia HI2424]
 gi|124871705|gb|EAY63421.1| hypothetical protein BCPG_01702 [Burkholderia cenocepacia PC184]
 gi|169817653|gb|ACA92236.1| putative flagellar protein FhlB [Burkholderia cenocepacia MC0-3]
          Length = 105

 Score = 75.6 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  ++A+ +   A++  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYAL 85


>gi|311030145|ref|ZP_07708235.1| hypothetical protein Bm3-1_06301 [Bacillus sp. m3-13]
          Length = 98

 Score = 75.6 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y Q +  APV+ AKG  +IA+ + + A +H IP+ E+ +L      ++ +N +IP
Sbjct: 11  AVAIKYDQAKTVAPVVKAKGAGIIAENIIQEAKKHQIPLQEDGALLEV-LMELELNESIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+ VA+++  +Y+ 
Sbjct: 70  EELYEVVAEVLAYVYNL 86


>gi|167751329|ref|ZP_02423456.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702]
 gi|167655575|gb|EDR99704.1| hypothetical protein EUBSIR_02315 [Eubacterium siraeum DSM 15702]
 gi|291530383|emb|CBK95968.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Eubacterium siraeum 70/3]
 gi|291557246|emb|CBL34363.1| Uncharacterized homolog of the cytoplasmic domain of flagellar
           protein FhlB [Eubacterium siraeum V10Sc8a]
          Length = 94

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y    N APV+VA G   +AKK+  IA E+ +P++ + S A +L   +     IP
Sbjct: 11  AAALKYNPDLNYAPVVVASGLGELAKKIINIADENGVPVYRDDSTA-ALLVMLNSGETIP 69

Query: 336 PVFYKAVAQLIYKI 349
              Y+ +A +  ++
Sbjct: 70  VELYRIIAAIYAEV 83


>gi|146293645|ref|YP_001184069.1| FlhB domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145565335|gb|ABP76270.1| FlhB domain protein [Shewanella putrefaciens CN-32]
 gi|319427044|gb|ADV55118.1| type III secretion exporter [Shewanella putrefaciens 200]
          Length = 103

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
           N T  A+AL Y      AP +VA G+ LIA+++  +A E  + I ++  L+  L + + +
Sbjct: 6   NKTKQAVALSYDGK--HAPKIVATGEGLIAEEIIALAKESGVYIHQDAHLSNFL-RLLEL 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y  +A+LI  +Y
Sbjct: 63  GEEIPKELYLLIAELIAFVY 82


>gi|113969652|ref|YP_733445.1| FlhB domain-containing protein [Shewanella sp. MR-4]
 gi|113884336|gb|ABI38388.1| FlhB domain protein [Shewanella sp. MR-4]
          Length = 103

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
             T  A+AL Y      AP +VA G+ L+A ++  +A    + I ++P L+  L + + +
Sbjct: 6   PKTQQAVALGYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLEL 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y  +A+LI  +Y
Sbjct: 63  GEEIPKELYLLIAELIAFVY 82


>gi|206558931|ref|YP_002229691.1| putative export system protein [Burkholderia cenocepacia J2315]
 gi|198034968|emb|CAR50840.1| putative export system protein [Burkholderia cenocepacia J2315]
          Length = 105

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A AL Y     + AP +VAKG  ++A+ +   A++  + +   P +  SL  QV ++  I
Sbjct: 9   AAALVYDPKGGDAAPRVVAKGYGVLAEMIVARAHDAGLYVHTAPEMV-SLLMQVDLDDRI 67

Query: 335 PPVFYKAVAQLIYKIYHK 352
           PP  Y+AVA L+  +Y  
Sbjct: 68  PPQLYQAVADLLAWLYAL 85


>gi|114046882|ref|YP_737432.1| FlhB domain-containing protein [Shewanella sp. MR-7]
 gi|113888324|gb|ABI42375.1| FlhB domain protein [Shewanella sp. MR-7]
          Length = 103

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
             T  A+AL Y      AP +VA G+ L+A ++  +A    + I ++P L+  L + + +
Sbjct: 6   PKTQQAVALSYDGK--HAPKVVASGEGLVADEIIALAKASGVYIHQDPHLSNFL-RLLEL 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y  +A+LI  +Y
Sbjct: 63  GEEIPKELYLLIAELIAFVY 82


>gi|261419407|ref|YP_003253089.1| hypothetical protein GYMC61_1991 [Geobacillus sp. Y412MC61]
 gi|319766222|ref|YP_004131723.1| type III secretion exporter [Geobacillus sp. Y412MC52]
 gi|261375864|gb|ACX78607.1| conserved hypothetical protein [Geobacillus sp. Y412MC61]
 gi|317111088|gb|ADU93580.1| type III secretion exporter [Geobacillus sp. Y412MC52]
          Length = 95

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP++ AKG   +A+ +   A EH +PI ++P+L   L  +V IN  IP
Sbjct: 8   AVALSYDAALDAAPIVKAKGVGKVAEAIIAAAREHGVPIRQDPTLVE-LLGKVEINETIP 66

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  VA+L   +Y  
Sbjct: 67  EELYALVAELFAFLYQL 83


>gi|300853474|ref|YP_003778458.1| hypothetical protein CLJU_c02710 [Clostridium ljungdahlii DSM
           13528]
 gi|300433589|gb|ADK13356.1| hypothetical protein CLJU_c02710 [Clostridium ljungdahlii DSM
           13528]
          Length = 88

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           +AP++ A G   IA  +   A E  +PI  +  LA +L   V I   +P   Y AVA++I
Sbjct: 17  EAPIVTAAGIGQIADNILNKAKESGVPIVYDKELA-NLLSNVDIGDNVPFELYDAVAKVI 75

Query: 347 YKI 349
             +
Sbjct: 76  AYV 78


>gi|332140356|ref|YP_004426094.1| uncharacterized C-terminal FlhB domain-containing protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550378|gb|AEA97096.1| uncharacterized C-terminal FlhB domain-containing protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 105

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 276 ALALRYIQ-TENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           A+ L+Y    + + P +V+KG   +A+ +  +A E  I I E+P L+  L   + +   I
Sbjct: 10  AIGLKYEGGDKKNTPKVVSKGYGDLAEAIIAMAEETGILIHEDPYLSEVL-ATLDVGQDI 68

Query: 335 PPVFYKAVAQLIY--KIYHKKI 354
           P   Y  +A+L+    +   KI
Sbjct: 69  PESLYFVIAELLAYSYVLQGKI 90


>gi|257457069|ref|ZP_05622247.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
 gi|257445543|gb|EEV20608.1| flagellar biosynthetic protein FlhB [Treponema vincentii ATCC
           35580]
          Length = 88

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL Y   E   P++ A G  +IA+K+R+IA + +IP+ + P LA  L  +  I S IP
Sbjct: 8   SVALSYTFGE-SVPLIAASGHGVIAQKIREIADKCHIPLIKNPLLAEVLV-EAEIGSCIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+AVA L   +  KK
Sbjct: 66  EETYQAVAALFAFL-QKK 82


>gi|126175101|ref|YP_001051250.1| FlhB domain-containing protein [Shewanella baltica OS155]
 gi|153001425|ref|YP_001367106.1| FlhB domain-containing protein [Shewanella baltica OS185]
 gi|160876150|ref|YP_001555466.1| FlhB domain-containing protein [Shewanella baltica OS195]
 gi|304409932|ref|ZP_07391551.1| type III secretion exporter [Shewanella baltica OS183]
 gi|307302355|ref|ZP_07582113.1| type III secretion exporter [Shewanella baltica BA175]
 gi|125998306|gb|ABN62381.1| FlhB domain protein [Shewanella baltica OS155]
 gi|151366043|gb|ABS09043.1| FlhB domain protein [Shewanella baltica OS185]
 gi|160861672|gb|ABX50206.1| FlhB domain protein [Shewanella baltica OS195]
 gi|304351341|gb|EFM15740.1| type III secretion exporter [Shewanella baltica OS183]
 gi|306914393|gb|EFN44814.1| type III secretion exporter [Shewanella baltica BA175]
 gi|315268346|gb|ADT95199.1| type III secretion exporter [Shewanella baltica OS678]
          Length = 102

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y     +AP +VA G+ LIA+++  +A  + + I ++P L+  L + + +   IP
Sbjct: 10  AVALSYD--GRNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFL-QLLELGEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI  +Y
Sbjct: 67  KELYLLIAELIAFVY 81


>gi|167034893|ref|YP_001670124.1| hypothetical protein PputGB1_3898 [Pseudomonas putida GB-1]
 gi|166861381|gb|ABY99788.1| conserved hypothetical protein [Pseudomonas putida GB-1]
          Length = 112

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T  A+AL Y      AP L AKG + +A+ +  +A EH +PI+E   L R L  ++ +  
Sbjct: 6   TRQAIALNYD--GQQAPTLSAKGDDALAEAILALAREHEVPIYENAELVR-LLARLELGE 62

Query: 333 AIPPVFYKAVAQLIYKIYHKK 353
            IP   Y  +A++I   +  +
Sbjct: 63  QIPEALYLTIAEIIAFAWQLR 83


>gi|119468354|ref|ZP_01611445.1| hypothetical protein ATW7_09923 [Alteromonadales bacterium TW-7]
 gi|119447862|gb|EAW29127.1| hypothetical protein ATW7_09923 [Alteromonadales bacterium TW-7]
          Length = 102

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y       P +  KG   +A+++   A +  I I E+P LA++L   + +   IP
Sbjct: 10  AIGLLYEAGST--PSVSVKGFGELAEEIISAAKQKGIMIHEDPDLAKTL-SHLELGEEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A+LI   Y  +
Sbjct: 67  KELYFVIAELIAFSYVLR 84


>gi|117919817|ref|YP_869009.1| FlhB domain-containing protein [Shewanella sp. ANA-3]
 gi|117612149|gb|ABK47603.1| FlhB domain protein [Shewanella sp. ANA-3]
          Length = 103

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPI 330
             T  A+AL Y     +AP +VA G+ L+A ++  +A    + I ++P L+  L + + +
Sbjct: 6   PKTQQAVALSYDGK--NAPKVVASGEGLVADEIIALAKASGVFIHQDPHLSNFL-RLLEL 62

Query: 331 NSAIPPVFYKAVAQLIYKIY 350
              IP   Y  +A+LI  +Y
Sbjct: 63  GEEIPKELYLLIAELIAFVY 82


>gi|266621940|ref|ZP_06114875.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
 gi|288866374|gb|EFC98672.1| flagellar biosynthetic protein FlhB [Clostridium hathewayi DSM
           13479]
          Length = 127

 Score = 75.2 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ +PV++A G   +A+ +  IA +  IP+F++ S A SL   + + S IP
Sbjct: 9   AVALKYNVEEDASPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLEVGSNIP 67

Query: 336 PVFYKAVAQL 345
              Y+ VA +
Sbjct: 68  VELYEVVAAI 77


>gi|187918556|ref|YP_001884119.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
 gi|119861404|gb|AAX17199.1| flagellar biosynthetic protein FlhB [Borrelia hermsii DAH]
          Length = 86

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            AL ++Y  T+  AP ++AK +   A +++++A +  IPI E+  L+ SLF  +     I
Sbjct: 6   LALLIKYD-TKFPAPFILAKARGEKALRIKELAKQEGIPIVEDKYLSESLF-LINEGDFI 63

Query: 335 PPVFYKAVAQLIYKIYHKK 353
              ++K VAQ++  +Y  K
Sbjct: 64  DFKYFKVVAQILSVVYKLK 82


>gi|239628974|ref|ZP_04672005.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519120|gb|EEQ58986.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 127

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   E+ +PV++A G   +A+ +  IA +  IP+F++ S A SL   + +   IP
Sbjct: 9   AVALKYNADEDTSPVVIASGYGTVAEHIIDIAEKKGIPVFKDDSAA-SLLCMLDVGCNIP 67

Query: 336 PVFYKAVAQL 345
              Y+ VA +
Sbjct: 68  VELYEVVAGI 77


>gi|6822153|emb|CAB71025.1| putative ABC transporter [Helicobacter pylori]
          Length = 80

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEMAKRIIQEAEEYDIALFSNPMLVDSLLK-VE 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|289578627|ref|YP_003477254.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528340|gb|ADD02692.1| flagellar protein FhlB-like protein [Thermoanaerobacter italicus
           Ab9]
          Length = 93

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ AP +VAKGQ  IA K+ + A +  +PI+++  +   L+  + I   IP
Sbjct: 9   AVALKYDV-QDIAPKVVAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              YK VA+++  I
Sbjct: 67  EDLYKIVAEILIFI 80


>gi|251772415|gb|EES52982.1| probable flagellar biosynthesis protein [Leptospirillum
           ferrodiazotrophum]
          Length = 90

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            ++ALRY+   ++AP+++  GQ  IA+ +  +A    IP+ + P L++ L + VP    +
Sbjct: 3   LSVALRYLPGVDEAPLVLVSGQGEIARGIVLLAQSLKIPVVKAPDLSQQLLR-VPPGHPV 61

Query: 335 PPVFYKAVAQLIYKIY 350
           P   Y+AVA ++  ++
Sbjct: 62  PEELYEAVAVILAALF 77


>gi|168334054|ref|ZP_02692270.1| hypothetical protein Epulo_03924 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 84

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + +AP + AKG+  +A+ +   A ++ IP++E+ +LA +L  +V I S IP
Sbjct: 4   AVALSY---KAEAPEVTAKGKGKVAENIIATAEKNEIPVYEDKNLA-NLLTEVEIGSQIP 59

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VA+++  +
Sbjct: 60  EEVYELVAKILIMV 73


>gi|157162317|ref|YP_001459635.1| hypothetical protein EcHS_A3014 [Escherichia coli HS]
 gi|300906604|ref|ZP_07124295.1| hypothetical protein HMPREF9536_04565 [Escherichia coli MS 84-1]
 gi|300950610|ref|ZP_07164512.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958191|ref|ZP_07170345.1| hypothetical protein HMPREF9547_03909 [Escherichia coli MS 175-1]
 gi|301303004|ref|ZP_07209131.1| hypothetical protein HMPREF9347_01589 [Escherichia coli MS 124-1]
 gi|301643803|ref|ZP_07243840.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|307139547|ref|ZP_07498903.1| surface presentation of antigens protein SpaS [Escherichia coli
           H736]
 gi|331643547|ref|ZP_08344678.1| surface presentation of antigens protein SpaS [Escherichia coli
           H736]
 gi|71388155|gb|AAZ31289.1| EpaS2 [Escherichia coli]
 gi|157067997|gb|ABV07252.1| conserved hypothetical protein [Escherichia coli HS]
 gi|300315143|gb|EFJ64927.1| hypothetical protein HMPREF9547_03909 [Escherichia coli MS 175-1]
 gi|300401643|gb|EFJ85181.1| hypothetical protein HMPREF9536_04565 [Escherichia coli MS 84-1]
 gi|300450090|gb|EFK13710.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300841668|gb|EFK69428.1| hypothetical protein HMPREF9347_01589 [Escherichia coli MS 124-1]
 gi|301077836|gb|EFK92642.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|315256729|gb|EFU36697.1| type III secretion system protein BsaZ [Escherichia coli MS 85-1]
 gi|323935781|gb|EGB32084.1| type III secretion protein SctU [Escherichia coli E1520]
 gi|331037018|gb|EGI09242.1| surface presentation of antigens protein SpaS [Escherichia coli
           H736]
          Length = 120

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +  LAR ++  
Sbjct: 1   MIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT 60

Query: 328 VPINSAI 334
                 +
Sbjct: 61  HRRYDYV 67


>gi|323155905|gb|EFZ42072.1| escU domain protein [Escherichia coli EPECa14]
          Length = 55

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 199 ILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSR 253
           +L      +V D  +  H+   K+KMSK E+K E K + GNP IK  ++ +    
Sbjct: 1   MLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRLHSEI 55


>gi|45657435|ref|YP_001521.1| flagellar biosynthetic transmembrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600674|gb|AAS70158.1| flagellar biosynthetic transmembrane protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 87

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            ++AL++I  +++APV+ A     +   +R IA ++++P  + P LA SL  ++PI S I
Sbjct: 2   ISVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVPTVKNPILAESL-SELPIGSEI 60

Query: 335 PPVFYKAVAQLIYKI 349
           P   Y+AV  +   I
Sbjct: 61  PENLYRAVGAIFSMI 75


>gi|297544850|ref|YP_003677152.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842625|gb|ADH61141.1| flagellar protein FhlB-like protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 93

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   ++ AP ++AKGQ  IA K+ + A +  +PI+++  +   L+  + I   IP
Sbjct: 9   AVALKYDV-QDIAPKVIAKGQGFIADKILEKAQQQKLPIYKDEEVVEKLY-NLEIQQYIP 66

Query: 336 PVFYKAVAQLIYKI 349
              Y  VA+++  I
Sbjct: 67  EDLYNIVAEILIFI 80


>gi|307638262|gb|ADN80712.1| putative ABC transporter [Helicobacter pylori 908]
 gi|317015012|gb|ADU82448.1| hypothetical protein HPGAM_08420 [Helicobacter pylori Gambia94/24]
 gi|325996854|gb|ADZ52259.1| FlhB-related flagellar biosynthesis protein [Helicobacter pylori
           2018]
 gi|325998446|gb|ADZ50654.1| putative flagellar biosynthesis protein [Helicobacter pylori 2017]
          Length = 90

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 270 TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVP 329
            N T  A AL Y   ++ AP ++A G   +AK++ + A E++I +F  P L  SL K V 
Sbjct: 1   MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VG 59

Query: 330 INSAIPPVFYKAVAQLIYKI 349
           ++ AIP   Y++V Q+   +
Sbjct: 60  LDCAIPEELYESVVQVFLWL 79


>gi|90579953|ref|ZP_01235761.1| Uncharacterized conserved protein [Vibrio angustum S14]
 gi|90438838|gb|EAS64021.1| Uncharacterized conserved protein [Vibrio angustum S14]
          Length = 102

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T +A+AL+Y   ++  P + AKG   +A+ + +   +H   I ++P LA+ L     +  
Sbjct: 8   TSHAIALKYDGEKS--PYITAKGHQQLAEHIIEQVKQHGGLIHQDPVLAQYL-NSFDVGD 64

Query: 333 AIPPVFYKAVAQLIYK 348
            IP   Y  +A+LI  
Sbjct: 65  EIPQELYLIIAELIAF 80


>gi|288555870|ref|YP_003427805.1| FlhB protein [Bacillus pseudofirmus OF4]
 gi|288547030|gb|ADC50913.1| FlhB protein [Bacillus pseudofirmus OF4]
          Length = 99

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           I   PT  A  +RY + +  AP +VA+G+  +A ++ ++A++++I + E+ +L  +L   
Sbjct: 14  IQNGPT--AAVIRYDKEDGSAPKVVAQGRGQLANQIIQLAHKNDIHMQEDATLVSNLL-D 70

Query: 328 VPINSAIPPVFYKAVAQLI 346
           + +   IPP  Y  +A+++
Sbjct: 71  MDLGDNIPPQLYSVMAEIL 89


>gi|148378183|ref|YP_001252724.1| hypothetical protein CBO0180 [Clostridium botulinum A str. ATCC
           3502]
 gi|148287667|emb|CAL81732.1| putative protein exporter [Clostridium botulinum A str. ATCC 3502]
          Length = 89

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           ++I N    A AL+Y ++    PV+ A G   +A K+ + A E  +PI  +  LA +L  
Sbjct: 1   MVILNERKKAAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58

Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349
            + I  +IP   Y AVA++I  +
Sbjct: 59  NIDIGDSIPYELYDAVAKVIAYV 81


>gi|153933699|ref|YP_001382583.1| hypothetical protein CLB_0219 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935408|ref|YP_001386136.1| hypothetical protein CLC_0233 [Clostridium botulinum A str. Hall]
 gi|153938549|ref|YP_001389542.1| hypothetical protein CLI_0242 [Clostridium botulinum F str.
           Langeland]
 gi|168177512|ref|ZP_02612176.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|170757316|ref|YP_001779806.1| hypothetical protein CLD_0601 [Clostridium botulinum B1 str. Okra]
 gi|170761762|ref|YP_001785507.1| hypothetical protein CLK_3357 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947401|ref|YP_002802492.1| hypothetical protein CLM_0228 [Clostridium botulinum A2 str. Kyoto]
 gi|152929743|gb|ABS35243.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931322|gb|ABS36821.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|152934445|gb|ABS39943.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|169122528|gb|ACA46364.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|169408751|gb|ACA57162.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670835|gb|EDT82809.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226844528|gb|ACO87194.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|295317640|gb|ADF98017.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
 gi|322804447|emb|CBZ01997.1| flagellar biosynthesis related protein [Clostridium botulinum
           H04402 065]
          Length = 86

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y ++    PV+ A G   +A K+ + A E  +PI  +  LA +L   + I  +IP
Sbjct: 7   AAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDIGDSIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  +
Sbjct: 65  YELYDAVAKVIAYV 78


>gi|329898296|ref|ZP_08272379.1| hypothetical protein IMCC3088_498 [gamma proteobacterium IMCC3088]
 gi|328920861|gb|EGG28304.1| hypothetical protein IMCC3088_498 [gamma proteobacterium IMCC3088]
          Length = 92

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 278 ALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
           A         AP ++AK      + + + A +  IP+ E P LA +L + V I+  IP  
Sbjct: 13  AYAVEYGSKAAPTVMAKASGYDVEILIEAARDLQIPVIENPQLA-ALLEGVEIDEEIPEE 71

Query: 338 FYKAVAQLIYKIY 350
            Y +VA ++  ++
Sbjct: 72  LYHSVAIVLSWVF 84


>gi|167623406|ref|YP_001673700.1| FlhB domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|167353428|gb|ABZ76041.1| FlhB domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 102

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP + AKG++ +A+++  +A +  I I ++  L   L +++ I   IP
Sbjct: 10  AVALSYQSG--AAPKVSAKGEDKLAEEIIALAQQAGIHIHQDEYLCDFL-QRLEIGDEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI  +Y
Sbjct: 67  SELYLLIAELIAFVY 81


>gi|119953478|ref|YP_945687.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135]
 gi|119862249|gb|AAX18017.1| flagellar biosynthetic protein FlhB [Borrelia turicatae 91E135]
          Length = 86

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            AL ++Y  T+  AP ++AK +     +++++A    IPI E+  L+ SLF  V     I
Sbjct: 6   LALLIKYD-TKFPAPFILAKARGEKVLRIKELAKREGIPIVEDKYLSESLF-LVNEGDFI 63

Query: 335 PPVFYKAVAQLIYKIYHKK 353
              ++K VA ++  +Y  K
Sbjct: 64  DSKYFKVVAHILSVVYKLK 82


>gi|187777232|ref|ZP_02993705.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC
           15579]
 gi|187774160|gb|EDU37962.1| hypothetical protein CLOSPO_00779 [Clostridium sporogenes ATCC
           15579]
          Length = 89

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 267 IIITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFK 326
           +II N    A AL+Y ++    PV+ A G   +A K+ + A E  +PI  +  LA +L  
Sbjct: 1   MIILNERKKAAALKYEESYTS-PVVTAAGMGYVADKILEKASEEKVPIVYDKELA-NLLT 58

Query: 327 QVPINSAIPPVFYKAVAQLIYKI 349
            + I  +IP   Y AVA++I  +
Sbjct: 59  NIDIGDSIPYELYDAVAKVIAYV 81


>gi|301303005|ref|ZP_07209132.1| hypothetical protein HMPREF9347_01590 [Escherichia coli MS 124-1]
 gi|300841669|gb|EFK69429.1| hypothetical protein HMPREF9347_01590 [Escherichia coli MS 124-1]
          Length = 67

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 191 TVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
            +  +++  L  +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++   
Sbjct: 1   MLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKKQEGNPEIKSKRRERI 60

Query: 251 R 251
           R
Sbjct: 61  R 61


>gi|310659608|ref|YP_003937329.1| hypothetical protein CLOST_2307 [Clostridium sticklandii DSM 519]
 gi|308826386|emb|CBH22424.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 95

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+++ Y   E  AP++ AKGQ  +A+K+ + A E  +  + +  L  SL   V I   IP
Sbjct: 11  AVSVTYE-DELRAPIVSAKGQGYVAEKIIEKAQESGVATYFDEELLESLMA-VAIGDEIP 68

Query: 336 PVFYKAVAQLIYKI 349
              Y+ VA+++  I
Sbjct: 69  VELYEIVAKVLAFI 82


>gi|297584528|ref|YP_003700308.1| putative cytoplasmic domain of flagellar protein FhlB-like protein
           [Bacillus selenitireducens MLS10]
 gi|297142985|gb|ADH99742.1| putative cytoplasmic domain of flagellar protein FhlB-like protein
           [Bacillus selenitireducens MLS10]
          Length = 99

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 269 ITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQV 328
           +  PT  A  +RY +T  D P +VA G+  IA+++ ++A E++I + E+  L  +L   +
Sbjct: 15  VNGPT--AAVIRYDETNGDDPKIVASGKGYIAERILELAKENHIHMEEDSLLLENLI-DM 71

Query: 329 PINSAIPPVFYKAVAQLIYKI 349
            +   IPP  Y  +A+++  I
Sbjct: 72  DLGENIPPQLYAVIAEILLMI 92


>gi|309793917|ref|ZP_07688342.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|308122324|gb|EFO59586.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 120

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +  LAR ++  
Sbjct: 1   MIANPTHIAIGIYFKPHLSTIPLISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYAT 60

Query: 328 VPINSAI 334
                 +
Sbjct: 61  HRRYDYV 67


>gi|91792711|ref|YP_562362.1| FlhB domain-containing protein [Shewanella denitrificans OS217]
 gi|91714713|gb|ABE54639.1| FlhB domain protein [Shewanella denitrificans OS217]
          Length = 99

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL +      AP + A G +L+A+++  +A +  + I ++P+L+  L + + +   +P
Sbjct: 7   AVALSFDGK--SAPKVTASGTDLLAEEIIALAEKAGVHIHQDPNLSNFL-QMLELGEEVP 63

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI  IY
Sbjct: 64  KELYLLIAELIAFIY 78


>gi|307310524|ref|ZP_07590172.1| type III secretion exporter [Escherichia coli W]
 gi|306909419|gb|EFN39914.1| type III secretion exporter [Escherichia coli W]
 gi|323377252|gb|ADX49520.1| type III secretion exporter [Escherichia coli KO11]
          Length = 120

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +  LAR ++  
Sbjct: 1   MIFNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKIYAT 60

Query: 328 VPINSAI 334
                 +
Sbjct: 61  HRRYDYV 67


>gi|15639896|ref|NP_219346.1| hypothetical protein TP0911 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026134|ref|YP_001933906.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3323223|gb|AAC65862.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018709|gb|ACD71327.1| hypothetical protein TPASS_0911 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060268|gb|ADD73003.1| FlhB domain protein [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 83

 Score = 72.5 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           ++AL Y  T + AP++VA G   IA+K+ +IA + +I + ++  LAR L +   I + IP
Sbjct: 8   SVALSY-ATGDKAPIIVASGTGAIAEKIVEIAKKFDIALVQDELLARVLSEH-RIGACIP 65

Query: 336 PVFYKAVAQLIYKIYHKK 353
           P  Y+ V+ +   +Y ++
Sbjct: 66  PETYQVVSAIFAFLYTQQ 83


>gi|168182211|ref|ZP_02616875.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|237793498|ref|YP_002861050.1| hypothetical protein CLJ_B0225 [Clostridium botulinum Ba4 str. 657]
 gi|182674642|gb|EDT86603.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|229261705|gb|ACQ52738.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 86

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y ++    PV+   G   +A K+ + A E  +PI  +  LA +L   + I  +IP
Sbjct: 7   AAALKYEESYTS-PVVTVAGMGYVADKILEKASEEKVPIVYDKELA-NLLTNIDIGDSIP 64

Query: 336 PVFYKAVAQLIYKI 349
              Y AVA++I  +
Sbjct: 65  YELYDAVAKVIAYV 78


>gi|15614038|ref|NP_242341.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans
           C-125]
 gi|10174092|dbj|BAB05194.1| flagellar biosynthesis (flhS-related protein) [Bacillus halodurans
           C-125]
          Length = 99

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A  ++Y +T  DAP LVA G+  IA+++  +A  +NI + E+P L  +L   + +   IP
Sbjct: 20  AAVIQYDETSGDAPKLVAHGKGQIAEQIIDMAKRNNIHMQEDPLLVENLL-DMDLGDNIP 78

Query: 336 PVFYKAVAQLI 346
           P  Y  +A+++
Sbjct: 79  PQLYSVMAEIL 89


>gi|89073439|ref|ZP_01159962.1| Uncharacterized conserved protein, C-terminal FlhB domain
           protein-like [Photobacterium sp. SKA34]
 gi|89050703|gb|EAR56184.1| Uncharacterized conserved protein, C-terminal FlhB domain
           protein-like [Photobacterium sp. SKA34]
          Length = 102

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 273 THYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINS 332
           T +A+AL+Y   ++  P + AKG   +A+ + +   +H   I ++P LA+ L     +  
Sbjct: 8   TTHAIALKYDGEKS--PYITAKGHQQLAEHIIEQVKQHGGLIHQDPVLAKYL-NSFDVGD 64

Query: 333 AIPPVFYKAVAQLIYK 348
            IP   Y  +A+LI  
Sbjct: 65  DIPQELYLIIAELIAF 80


>gi|218671828|ref|ZP_03521497.1| type III secretion system translocation protein [Rhizobium etli
           GR56]
          Length = 107

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
           G I+         ++           L      +  +L++    +      DI  S   +
Sbjct: 5   GAILYF-----LNSIFWSPLCGEACTLSTTAHLLGSILVIAAGIMVAAAFFDIRISRALF 59

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
             + +M+K E + E K + G+P +K+ ++ I            
Sbjct: 60  RHEHRMTKTEARREYKDTQGDPKLKSARRQIGAEMRSSPPRRQ 102


>gi|322379284|ref|ZP_08053670.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1]
 gi|322379844|ref|ZP_08054132.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5]
 gi|321147722|gb|EFX42334.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS5]
 gi|321148321|gb|EFX42835.1| FlhB-related flagellar biosynthesis protein [Helicobacter suis HS1]
          Length = 86

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++ AP +VA G   IA+ + + A   +IP+F   SL  SL   +P++ AIP
Sbjct: 4   AVALAYNIEQDHAPKVVASGVGSIAEAIMQKAKAFDIPLFCNESLVESLLH-LPVDHAIP 62

Query: 336 PVFYKAVAQLIYKI 349
           P  Y++V ++   +
Sbjct: 63  PELYQSVVEVFIWL 76


>gi|323941620|gb|EGB37800.1| type III secretion protein SctU [Escherichia coli E482]
          Length = 120

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           +L   +YL + F   ++ + S L  +L    +  + D          + +   + +IP L
Sbjct: 1   MLVGTLYLGYVFD--VHHIMSILEYILDHNAKPDIWD------YFKAMGVGWLKTIIPFL 52

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
           L+ M   I     Q    L    VK  F  ++   G+KRI+ +  +  F+K+ + II   
Sbjct: 53  LVCMFTTILVSWFQSKMQLATEAVKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIIFFV 112

Query: 160 T 160
            
Sbjct: 113 I 113


>gi|226326421|ref|ZP_03801939.1| hypothetical protein PROPEN_00269 [Proteus penneri ATCC 35198]
 gi|225205204|gb|EEG87558.1| hypothetical protein PROPEN_00269 [Proteus penneri ATCC 35198]
          Length = 176

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 53/138 (38%)

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           +  +S     +++P L++  + G    L +    L    +K    R++   G K+I+S+ 
Sbjct: 33  IEVISKVFFDIILPILVVTALVGTIPSLFESRFKLATEAIKLDLTRINPISGFKKIFSLR 92

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            + +F+K+ + I++      + +      +     +  + ++      V   + +    +
Sbjct: 93  TVKDFIKTLLFIVVFIITCYLFIIVYGREIFFLYRSGLNQVIDKWGSLVVSFIFVFFYIV 152

Query: 204 ATLTVLDIGWSYHQWYSK 221
            T +       +  +  +
Sbjct: 153 FTYSYFKYYNGFLSFLKR 170


>gi|294140230|ref|YP_003556208.1| FlhB domain-containing protein [Shewanella violacea DSS12]
 gi|293326699|dbj|BAJ01430.1| FlhB domain protein [Shewanella violacea DSS12]
          Length = 114

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y      AP++ A G+  +A ++  +A E  + I ++  L+  L +++ I   IP
Sbjct: 22  AVALSYD--GQQAPMITATGKGAVADEIIALAKEAGVLIHKDAHLSDFL-QRLEIGDEIP 78

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y  +A+LI   Y  
Sbjct: 79  KELYLLIAELIAFAYTL 95


>gi|42527803|ref|NP_972901.1| FlhB domain-containing protein [Treponema denticola ATCC 35405]
 gi|41818631|gb|AAS12820.1| FlhB domain protein [Treponema denticola ATCC 35405]
 gi|325474963|gb|EGC78149.1| FlhB domain-containing protein [Treponema denticola F0402]
          Length = 87

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   E  AP++ A G+ L AK++++ A  + I I E+ +LA  L     I S IP
Sbjct: 12  AVALSY-ALEAKAPIITASGRGLTAKRIKEAAERNKIKIVEDETLANILIHH-EIGSCIP 69

Query: 336 PVFYKAVAQLIYKIYHK 352
              YKAVA +   +  K
Sbjct: 70  EYTYKAVAAIFAFLLKK 86


>gi|300820657|ref|ZP_07100808.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7]
 gi|309793918|ref|ZP_07688343.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7]
 gi|300526921|gb|EFK47990.1| hypothetical protein HMPREF9346_00462 [Escherichia coli MS 119-7]
 gi|308122325|gb|EFO59587.1| hypothetical protein HMPREF9348_01090 [Escherichia coli MS 145-7]
          Length = 55

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
           +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++   R
Sbjct: 1   MIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 49


>gi|229918614|ref|YP_002887260.1| FlhB domain protein [Exiguobacterium sp. AT1b]
 gi|229470043|gb|ACQ71815.1| FlhB domain protein [Exiguobacterium sp. AT1b]
          Length = 86

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y Q+  DAP +VAKG  ++A++M +IA  + +P+ E+P+L       + I   IP
Sbjct: 7   AMALSYEQS-MDAPHVVAKGTGIVAERMLEIALANGVPVHEDPALLSL-LSALNIEEQIP 64

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y+ +A+L   +Y  +
Sbjct: 65  EDVYQVIAELFVFLYQME 82


>gi|332533097|ref|ZP_08408966.1| hypothetical protein PH505_am00120 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037379|gb|EGI73833.1| hypothetical protein PH505_am00120 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 102

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y       P +  KG   +A ++   A    I I E+ +LA++L   + +   IP
Sbjct: 10  AIGLLYEAGNT--PTVSVKGFGELADEIIAAAKLKGIMIHEDAALAKTL-SHLELGEEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A+LI   Y  +
Sbjct: 67  KELYYVIAELIAFSYVLR 84


>gi|14422431|dbj|BAB60838.1| epaS2 [Escherichia coli]
          Length = 120

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I+NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +  LAR  +  
Sbjct: 1   MISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKNYAT 60

Query: 328 VPINSAI 334
                 +
Sbjct: 61  HRRYDYV 67


>gi|328947869|ref|YP_004365206.1| type III secretion exporter [Treponema succinifaciens DSM 2489]
 gi|328448193|gb|AEB13909.1| type III secretion exporter [Treponema succinifaciens DSM 2489]
          Length = 87

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +A++L+Y     DAP + AK   ++AKKM +IA E+NIP+ E   +A ++     I   I
Sbjct: 8   FAVSLKY-PENADAPFISAKESGILAKKMVEIAQENNIPVVEN-DIAANILSMRQIGECI 65

Query: 335 PPVFYKAVAQLIYKIYHKK 353
           P   ++A+A++   I + +
Sbjct: 66  PESTWEAIAEIFTFIKNME 84


>gi|56460216|ref|YP_155497.1| FlhB domain-containing protein [Idiomarina loihiensis L2TR]
 gi|56179226|gb|AAV81948.1| Uncharacterized conserved protein, related to C-terminal FlhB
           domain [Idiomarina loihiensis L2TR]
          Length = 93

 Score = 70.2 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y     +AP ++A+G + +A+++  +A EH + + E+P L+ SL  ++ +   IP
Sbjct: 9   AIGLSYD--GFNAPKVIARGFDELAEEIIAVAKEHGVLVHEDPLLSDSL-AKLNVGDEIP 65

Query: 336 PVFY 339
              Y
Sbjct: 66  RELY 69


>gi|291529025|emb|CBK94611.1| Flagellar biosynthesis pathway, component FlhB [Eubacterium
          rectale M104/1]
          Length = 93

 Score = 70.2 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 2  SENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSD 61
          +++     KTE  + KK++DA  EG    S+E +    ++   + L  F S    ++   
Sbjct: 25 AQDGEGGEKTEPATEKKLKDAREEGKVAKSKELTAAFDLIVLFLVLKIFISFVGGNLIGL 84

Query: 62 LHV 64
             
Sbjct: 85 FST 87


>gi|293449181|ref|ZP_06663602.1| type III secretion protein SctU [Escherichia coli B088]
 gi|300815713|ref|ZP_07095937.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300820656|ref|ZP_07100807.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331669594|ref|ZP_08370440.1| surface presentation of antigens protein SpaS [Escherichia coli
           TA271]
 gi|331678843|ref|ZP_08379517.1| surface presentation of antigens protein SpaS [Escherichia coli
           H591]
 gi|291322271|gb|EFE61700.1| type III secretion protein SctU [Escherichia coli B088]
 gi|300526920|gb|EFK47989.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|300531642|gb|EFK52704.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|323946509|gb|EGB42533.1| type III secretion protein SctU [Escherichia coli H120]
 gi|324119898|gb|EGC13777.1| type III secretion protein SctU [Escherichia coli E1167]
 gi|331063262|gb|EGI35175.1| surface presentation of antigens protein SpaS [Escherichia coli
           TA271]
 gi|331073673|gb|EGI44994.1| surface presentation of antigens protein SpaS [Escherichia coli
           H591]
          Length = 120

 Score = 70.2 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 268 IITNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           +I+NPTH A+ + +    +  P++  +  N +A  +RK A E  IPI  +  LAR  +  
Sbjct: 1   MISNPTHIAIGIYFKPHLSPIPLISVRVTNEVALGVRKYAKEIGIPIITDKKLARKNYAT 60

Query: 328 VPINSAI 334
                 +
Sbjct: 61  HRRYDYV 67


>gi|296283248|ref|ZP_06861246.1| flagellar biosynthetic protein FlhB [Citromicrobium bathyomarinum
           JL354]
          Length = 66

 Score = 69.8 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHK 352
           IA +++IPI E+P LAR+L     ++  IP   Y AVA++I  +   
Sbjct: 15  IAKDNDIPIIEKPPLARALHASAKLDQPIPAEHYLAVAEIISYVMKL 61


>gi|160901650|ref|YP_001567231.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95]
 gi|160359294|gb|ABX30908.1| flagellar biosynthesis protein [Petrotoga mobilis SJ95]
          Length = 87

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ALRY Q  + AP +VAKG + IA+++ +IA E NIPI +        +  + ++  IP
Sbjct: 7   AVALRYKQGTDQAPKVVAKGIDSIARRIIEIAEEENIPIVKSEKAVEEFYG-LDLDEEIP 65

Query: 336 PVFYKAVAQLIYKIYHK 352
           P  Y+  A++I  ++  
Sbjct: 66  PELYELAAEIIAFVFKL 82


>gi|24215084|ref|NP_712565.1| FlhB-like protein [Leptospira interrogans serovar Lai str. 56601]
 gi|24196142|gb|AAN49583.1| FlhB-related protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 87

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 275 YALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
            ++AL++I  +++APV+ A     +   +R IA ++++   + P LA SL  ++PI S I
Sbjct: 2   ISVALKFIPKKDNAPVITAAASGFLGDVIRNIAEKNSVLTVKNPILAESL-SELPIGSEI 60

Query: 335 PPVFYKAVAQLIYKI 349
           P   Y+AV  +   I
Sbjct: 61  PENLYRAVGAIFSMI 75


>gi|77359769|ref|YP_339344.1| hypothetical protein PSHAa0820 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874680|emb|CAI85901.1| conserved protein of unknown function; similar to FlhB domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 102

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y    +  P++  KG   +A ++   A +  I I ++ +LA++L   + +   IP
Sbjct: 10  AIGLLYAAGNS--PMVSTKGFGKLADEIIAAAEKKGIMIHQDEALAKTL-SHLELGEEIP 66

Query: 336 PVFYKAVAQLIYKIYHKK 353
              Y  +A+LI   Y  +
Sbjct: 67  KELYYVIAELIAFSYVLR 84


>gi|330445392|ref|ZP_08309044.1| hypothetical protein PMSV_307 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489583|dbj|GAA03541.1| hypothetical protein PMSV_307 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 99

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y   +   P + AKG   +A+ + +   +    I ++P LA+ L     +   IP
Sbjct: 8   AIALKYDGEKT--PYITAKGHQQLAEHIIEQVKQQGGLIHQDPVLAQYL-NSFDVGDEIP 64

Query: 336 PVFYKAVAQLIYK 348
              Y  +A+LI  
Sbjct: 65  QELYLIIAELIAF 77


>gi|94500688|ref|ZP_01307218.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Oceanobacter sp. RED65]
 gi|94427243|gb|EAT12223.1| uncharacterized flagellar protein FhlB cytoplasmic domain
           [Oceanobacter sp. RED65]
          Length = 93

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y       P++        A+ +   A E  IPI+E P+L   L         IP
Sbjct: 6   AVALFYDGDTT--PIVSQNQLGEAAQFLIDAALEAGIPIYENPALIEQLAHLSE-GDEIP 62

Query: 336 PVFYKAVAQLIYKIY 350
              Y+ +A+++   +
Sbjct: 63  VELYRLIAEILAFAF 77


>gi|315127291|ref|YP_004069294.1| hypothetical protein PSM_A2228 [Pseudoalteromonas sp. SM9913]
 gi|315015805|gb|ADT69143.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 102

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y    +  P++ AKG   +A ++  +A E  I I ++ +LA +L  ++ +   IP
Sbjct: 10  AIGLLYEAGHS--PIVSAKGFGELADEIIALAKEKGILIHQDEALANTL-SKLDLAEEIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI   Y
Sbjct: 67  KELYFVIAELIAFSY 81


>gi|300906603|ref|ZP_07124294.1| hypothetical protein HMPREF9536_04564 [Escherichia coli MS 84-1]
 gi|300401642|gb|EFJ85180.1| hypothetical protein HMPREF9536_04564 [Escherichia coli MS 84-1]
 gi|315256730|gb|EFU36698.1| surface presentation of antigens protein SpaS [Escherichia coli MS
           85-1]
 gi|323183411|gb|EFZ68808.1| surface presentation of antigens protein spaS domain protein
           [Escherichia coli 1357]
          Length = 55

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
           +  + + D    Y  +   +KM KQE+K E K+  GNP IK++++   R
Sbjct: 1   MIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKKQEGNPEIKSKRRERIR 49


>gi|255523689|ref|ZP_05390655.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
           P7]
 gi|296186693|ref|ZP_06855095.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
           P7]
 gi|255512558|gb|EET88832.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
           P7]
 gi|296048730|gb|EFG88162.1| flagellar biosynthetic protein FliR [Clostridium carboxidivorans
           P7]
          Length = 320

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 6   APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
           A D+KTE  + KK  DA  +G    S+E +L  ++LA  I ++         + S L V 
Sbjct: 261 ASDDKTEEATPKKKSDARKKGQIAKSKEIALALTLLASTIVIVALGGYVGNGLKSTLIVF 320


>gi|15893927|ref|NP_347276.1| flagellar biosynthesis related protein [Clostridium acetobutylicum
           ATCC 824]
 gi|15023512|gb|AAK78616.1|AE007579_6 Flagellar biosynthesis related protein [Clostridium acetobutylicum
           ATCC 824]
 gi|325508054|gb|ADZ19690.1| Flagellar biosynthesis related protein [Clostridium acetobutylicum
           EA 2018]
          Length = 90

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL+Y     +AP++ A G   IA  + K A E+ +P+     L   L   V + S+IP
Sbjct: 8   AAALKYDLG-YEAPIVTAVGVGKIADNIVKKASENEVPVVYNKELTD-LLLNVDVGSSIP 65

Query: 336 PVFYKAVAQLIYKI 349
              Y  VA++I  I
Sbjct: 66  YEIYDVVAEVIAYI 79


>gi|158524068|gb|ABW71141.1| putative type III secretion apparatus protein [Vibrio
           parahaemolyticus]
          Length = 160

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 88  SLSASRLVIPGLLLF-MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            +      + GL L  ++  +  +++    V++   +     +++   G K I+ +  + 
Sbjct: 12  GIDVLWWCVGGLALLKLVMAVFEWVMINKAVISTESLGLKMDKINPINGTKNIFGVEAIS 71

Query: 147 NFMKSFVKIILVGTIITI--SLTENYFTMLDFISA--NPHSILYHAFFTVRKVLIMILLF 202
              +SF K++ +  ++ +   + +   + L  ++   N    +Y+  +++    +  L++
Sbjct: 72  ---RSFRKVLELLFLLFLLKYVADVLGSQLYLLNEINNYPYFIYYLIYSIGAASVFYLVY 128

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
              +  +D     + +  K +M+  E+K+E+K
Sbjct: 129 GLCVGTVDFMAEKYHFLHKNRMTFTEMKNELK 160


>gi|114563973|ref|YP_751487.1| FlhB domain-containing protein [Shewanella frigidimarina NCIMB 400]
 gi|114335266|gb|ABI72648.1| FlhB domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 104

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL +      AP + A G++L+A++M  IA E  I I ++P L+  L + + +   +P
Sbjct: 12  AVALSFDGK--SAPKITATGKDLVAEEMILIAKEAGIHIHQDPHLSEFL-QLLELGDEVP 68

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI  +Y
Sbjct: 69  KELYLLIAELIAFVY 83


>gi|13811425|gb|AAK40113.1|AF354753_1 FlhB [Yersinia enterocolitica]
          Length = 52

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLL 48
          M+E D+  +K+E P++ K+E A  +G  P SRE +    + A L  L 
Sbjct: 1  MAE-DSDADKSEEPTAHKLEKAREKGQIPRSRELTSMLMLGAGLAILW 47


>gi|237749753|ref|ZP_04580233.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374618|gb|EEO25009.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 91

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y + ++ AP +VA GQ  IA+ +   A E+ +P+F    L  SL K + +NS +P
Sbjct: 5   AAALAYEEYKDHAPRIVASGQGKIAEAIIAKAQEYQVPLFCNAELVDSLIK-MEVNSNVP 63

Query: 336 PVFYKAVAQLIYKI 349
              Y+AV  +   +
Sbjct: 64  EALYQAVVDVFIWL 77


>gi|212634395|ref|YP_002310920.1| FlhB domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555879|gb|ACJ28333.1| FlhB domain protein [Shewanella piezotolerans WP3]
          Length = 102

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+A++Y Q    AP + AK ++ +A++M  +A E  I I ++  L   L +++ +  AIP
Sbjct: 10  AVAVKYDQG--AAPSISAKAEDELAQEMIALAEEAGIFIHKDEHLCEFL-QKMDVGEAIP 66

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI   Y
Sbjct: 67  KELYLLIAELIAFAY 81


>gi|158524090|gb|ABW71152.1| putative type III secretion apparatus protein [Vibrio
           parahaemolyticus]
          Length = 147

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 98  GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
             LL ++  +  +++    V++   +     +++   G K I+ +  +    +SF K++ 
Sbjct: 10  LALLKLVMAVFEWVMINKAVISTESLGLKMDKINPVNGTKNIFGVEAIS---RSFRKVLE 66

Query: 158 VGTIITI--SLTENYFTMLDFISA--NPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           +  ++ +   + +   + L  ++   N    +Y+  +++    +  L++   +  +D   
Sbjct: 67  LLFLLFLLKYVADVLGSQLYLLNEINNYPYFIYYLIYSIGAASVFYLVYGLCVGTVDFMA 126

Query: 214 SYHQWYSKLKMSKQEIKDEIK 234
             + +  K +M+  E+K+E+K
Sbjct: 127 EKYHFLHKNRMTFTEMKNELK 147


>gi|185177884|pdb|3BZL|A Chain A, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177886|pdb|3BZL|B Chain B, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177888|pdb|3BZO|A Chain A, Crystal Structural Of Native Escu C-Terminal Domain
 gi|185177894|pdb|3BZV|A Chain A, Crystal Structural Of The Mutated T264a Escu C-Terminal
           Domain
 gi|185177896|pdb|3BZX|A Chain A, Crystal Structure Of The Mutated H265a Escu C-Terminal
           Domain
 gi|185177898|pdb|3BZY|A Chain A, Crystal Structure Of The Mutated Y316d Escu C-Terminal
           Domain
 gi|185177900|pdb|3BZZ|A Chain A, Crystal Structural Of The Mutated R313t EscuSPAS C-
           Terminal Domain
          Length = 54

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+ N
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKN 54


>gi|183221054|ref|YP_001839050.1| hypothetical protein LEPBI_I1667 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911148|ref|YP_001962703.1| FhlB-like protein [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775824|gb|ABZ94125.1| FhlB-related protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779476|gb|ABZ97774.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 86

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPP 336
           +AL Y   E+ AP LVAK + L+A  + +IA +  + I ++  + ++L   +P    IP 
Sbjct: 6   VALAYNPNEDPAPKLVAKAEGLLASHLVRIAKDAGVFIVQDEMMVKTL-AHLPNGKEIPR 64

Query: 337 VFYKAVAQLI 346
             Y+ VA + 
Sbjct: 65  ELYEVVASVF 74


>gi|167949063|ref|ZP_02536137.1| flagellar biosynthesis protein FlhB [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 67

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 313 PIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYHKK 353
           PI E P LAR+++    +N +IP   Y AVA+L+  ++  K
Sbjct: 2   PIIESPMLARAIYFSTELNESIPAGLYLAVAKLLAYVFQLK 42


>gi|185177905|pdb|3C01|E Chain E, Crystal Structural Of Native Spas C-Terminal Domain
 gi|185177907|pdb|3C01|F Chain F, Crystal Structural Of Native Spas C-Terminal Domain
 gi|185177909|pdb|3C01|G Chain G, Crystal Structural Of Native Spas C-Terminal Domain
 gi|185177911|pdb|3C01|H Chain H, Crystal Structural Of Native Spas C-Terminal Domain
          Length = 98

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 272 PTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQ 327
           PTH  + + +       P++     N  A  +R  A +  +P+  +  LARSLFK 
Sbjct: 1   PTHITIGIYFKPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKT 56


>gi|255028553|ref|ZP_05300504.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes LO28]
          Length = 78

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%)

Query: 6  APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
          A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2  AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66 LASA 69
          L   
Sbjct: 62 LKQP 65


>gi|313620099|gb|EFR91604.1| flagellar biosynthesis protein FlhB [Listeria innocua FSL S4-378]
          Length = 80

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%)

Query: 6  APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL 65
          A DNKTE  + ++I+ A NEGN   S+E +   S+L     L FF    I +       L
Sbjct: 2  AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLYFFGEMFIKNTIQAFVAL 61

Query: 66 LASATQRKLEDISHIVFLL 84
          L    +    +   + +L+
Sbjct: 62 LKQPPKLASMESYSLFYLM 80


>gi|88858080|ref|ZP_01132722.1| hypothetical protein PTD2_11859 [Pseudoalteromonas tunicata D2]
 gi|88819697|gb|EAR29510.1| hypothetical protein PTD2_11859 [Pseudoalteromonas tunicata D2]
          Length = 98

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+ L Y     +AP +  KG  ++A+++  +A E NI I ++  L+  + KQ+ +   IP
Sbjct: 6   AIGLLYDGK--NAPSVSVKGFGVLAEEILALAKEKNILIHQDEGLSDVI-KQLELGQEIP 62

Query: 336 PVFYKAVAQLIYKIY 350
              Y  +A+LI   Y
Sbjct: 63  RELYLIIAELIAFSY 77


>gi|185177913|pdb|3C03|B Chain B, Crystal Structure Of The Escu C-Terminal Domain With P263a
           Mutation,Space Group P 1 21 1
          Length = 54

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIII 269
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIV 52


>gi|185177902|pdb|3C00|A Chain A, Crystal Structural Of The Mutated G247t EscuSPAS C-
           Terminal Domain
          Length = 54

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
           MSK E+K E K + GNP IK  ++ +        +     ++T+I+ N
Sbjct: 7   MSKDEVKREAKDTDGNPEIKGERRRLHSEIQSTSLANNIKKSTVIVKN 54


>gi|306820966|ref|ZP_07454586.1| FlhB domain protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551080|gb|EFM39051.1| FlhB domain protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 91

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   + +APV+ AKG   +A  M + A    I  + +  L  SL   + I   IP
Sbjct: 14  AVALEYD-EQYNAPVVSAKGSGYVAMNMLEKARLDGISTYFDEDLLNSLMA-LSIGDEIP 71

Query: 336 PVFYKAVAQLIYKI 349
              Y  VA+++  +
Sbjct: 72  YQLYDIVAKVLQYV 85


>gi|289606861|emb|CBI60977.1| unnamed protein product [Sordaria macrospora]
          Length = 87

 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
          MSE+     KTE+P+ K+++ A  +G+   S+E      +LA   +L  F    + +  +
Sbjct: 1  MSED-----KTESPTQKRLDKAREDGDILKSKELGTALVVLAGCGWLAMFGPTLVAACKA 55

Query: 61 DLHVLLASATQRKLEDISHIVFLL 84
           +        +  +ED      L+
Sbjct: 56 VMTASFR-FGRADVEDFQPWRPLV 78


>gi|213025709|ref|ZP_03340156.1| surface presentation of antigens protein SpaS [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 119

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 43/103 (41%)

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
             + +IP +LL ++      L+Q   VL    +KP+   ++  EG K+++S+  + + +K
Sbjct: 17  GLKYLIPFMLLCLVCSALPALLQAGFVLATEALKPNLSALNPVEGAKKLFSMRTVKDTVK 76

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
           + + +        I   +    +   ++ N   I       + 
Sbjct: 77  TLLYLSSFVVAAIICWKKYKVEIFSQLNGNVVDIAVIWRELLL 119


>gi|133872993|gb|ABO40489.1| EscU [Vibrio parahaemolyticus]
          Length = 54

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 271 NPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           NPTH  + + Y       PV++      +A + RK      IPI E   LAR++
Sbjct: 1   NPTHILVPVCYDPKIERRPVVLKICTESLALEERKRLEAMGIPIIEHIPLARAM 54


>gi|317009220|gb|ADU79800.1| flagellar biosynthesis protein FlhB [Helicobacter pylori India7]
          Length = 61

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
          M+E    + KTE PS+KKI+ A  EGN P S E      +LA LI +  F   G  ++  
Sbjct: 1  MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLIGIFVFLYGGWMALAR 56

Query: 61 DLHVL 65
           + + 
Sbjct: 57 CIAMY 61


>gi|317012580|gb|ADU83188.1| flagellar biosynthesis protein FlhB [Helicobacter pylori
          Lithuania75]
          Length = 61

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
          M+E    + KTE PS+KKI+ A  EGN P S E      +LA L+ +  F   G  ++  
Sbjct: 1  MAE----EEKTELPSAKKIQKAREEGNVPKSMEVVGVLGLLAGLMSIFVFLYGGWMALAR 56


>gi|185177904|pdb|3C01|A Chain A, Crystal Structural Of Native Spas C-Terminal Domain
 gi|185177906|pdb|3C01|B Chain B, Crystal Structural Of Native Spas C-Terminal Domain
 gi|185177908|pdb|3C01|C Chain C, Crystal Structural Of Native Spas C-Terminal Domain
 gi|185177910|pdb|3C01|D Chain D, Crystal Structural Of Native Spas C-Terminal Domain
          Length = 48

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 224 MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
           M K+E+K E+K+  GNP +K++++ +    +  ++      + +I+ N
Sbjct: 1   MDKEEVKREMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVAN 48


>gi|330893582|gb|EGH26243.1| type III secretion component protein HrcU [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 83

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 38/82 (46%)

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S +K + +G  + + +      ++   +++  +  +      R +L +IL  +  + ++D
Sbjct: 2   SILKAVAIGATLYMQVKPALGALILLANSDLTTYWHALVELFRHILRVILGLLLVVAMVD 61

Query: 211 IGWSYHQWYSKLKMSKQEIKDE 232
                +    KL+MS ++IK E
Sbjct: 62  FAMQKYFHAKKLRMSHEDIKKE 83


>gi|213162232|ref|ZP_03347942.1| secretion system apparatus protein SsaU [Salmonella enterica
          subsp. enterica serovar Typhi str. E00-7866]
          Length = 83

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%)

Query: 9  NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
           KTE P+ KK+ D   EG    S E +    ++A  +Y  FF    I  +   +   L  
Sbjct: 3  EKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQL 62

Query: 69 ATQRKLEDISHIVFLLTH 86
            +     ++ +   L  
Sbjct: 63 VNKPFSYALTQLSHALIE 80


>gi|291519579|emb|CBK74800.1| Flagellar biosynthesis pathway, component FlhB [Butyrivibrio
          fibrisolvens 16/4]
          Length = 145

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 4  NDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52
          +     KTE P+SKK+ DA  EG    S+E     ++L     L  F S
Sbjct: 18 DGEGGEKTEQPTSKKLSDARKEGKVAKSKEIVNGIALLGFFFALRVFLS 66


>gi|330882956|gb|EGH17105.1| type III secretion component [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 46

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYL 47
          MSE  + + K++  S KK+ DA  +G    S++      IL C + +
Sbjct: 1  MSE--SSEEKSQPASDKKLRDARKKGQVAKSQDLVSGMVILMCTLCI 45


>gi|225374460|ref|ZP_03751681.1| hypothetical protein ROSEINA2194_00075 [Roseburia inulinivorans DSM
           16841]
 gi|225213698|gb|EEG96052.1| hypothetical protein ROSEINA2194_00075 [Roseburia inulinivorans DSM
           16841]
          Length = 67

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
           +A+K+   A E+++P +++  LA +L  ++ I  AIPP  Y+ VA+++  +
Sbjct: 1   MAEKIIAKAKENDVPFYKDNKLAETL-SKLEIGDAIPPELYEVVAEILVFV 50


>gi|301026127|ref|ZP_07189601.1| conserved domain protein [Escherichia coli MS 196-1]
 gi|312972921|ref|ZP_07787094.1| surface presentation of antigens spaS domain protein [Escherichia
           coli 1827-70]
 gi|299879822|gb|EFI88033.1| conserved domain protein [Escherichia coli MS 196-1]
 gi|310332863|gb|EFQ00077.1| surface presentation of antigens spaS domain protein [Escherichia
           coli 1827-70]
          Length = 39

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 219 YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIAR 251
              +KM KQE+K E K+  GNP IK++++   R
Sbjct: 1   MKDMKMDKQEVKREYKEQEGNPEIKSKRRERIR 33


>gi|56964047|ref|YP_175778.1| flagellar biosynthesis protein [Bacillus clausii KSM-K16]
 gi|56910290|dbj|BAD64817.1| flagellar biosynthesis protein [Bacillus clausii KSM-K16]
          Length = 161

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A AL Y    + AP LVAKG    A+ M   A +  IP+ +   L+  L   +     IP
Sbjct: 9   AYALSYK-DGDVAPRLVAKGARKQAEAMVAEAKKQGIPVIKHQQLSEEL-AHLREMQFIP 66

Query: 336 PVFYKAVAQLIYKIYHK 352
              Y+  A+L   ++  
Sbjct: 67  ESLYEVAAELFVFLHSL 83


>gi|332297553|ref|YP_004439475.1| FlhB domain protein [Treponema brennaborense DSM 12168]
 gi|332180656|gb|AEE16344.1| FlhB domain protein [Treponema brennaborense DSM 12168]
          Length = 98

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y     DAP +    +  +A ++  +A E  IP+ ++  LA  L       S +P
Sbjct: 16  AVALQY-PAGADAPFIAVSAKGALADRVEALAKELGIPVKKDEILANVL-SVCDAGSYVP 73

Query: 336 PVFYKAVAQLIYKI 349
              Y+A+A++   I
Sbjct: 74  VQTYEALAKIFIFI 87


>gi|262276369|ref|ZP_06054178.1| hypothetical protein VHA_003354 [Grimontia hollisae CIP 101886]
 gi|262220177|gb|EEY71493.1| hypothetical protein VHA_003354 [Grimontia hollisae CIP 101886]
          Length = 97

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL+Y       P + AKG + +A+ + +   ++   I  + +L   L   + +   IP
Sbjct: 7   AIALKYDGINT--PKVSAKGYDQLAEILIEEMEKNGGLIHSDEALMNWL-SALEVGDEIP 63

Query: 336 PVFYKAVAQLIYKIYHK 352
             FY  +A+LI   ++ 
Sbjct: 64  EQFYLVIAELIAFAWYL 80


>gi|258626190|ref|ZP_05721038.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581545|gb|EEW06446.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 110

 Score = 59.4 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 1/107 (0%)

Query: 20  EDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISH 79
           + A  +G    S+E +  S ++   + L++F       + + +  L  S  + ++ DI  
Sbjct: 2   QQAKEKGQVARSKELASVSVLVVGAVSLMWFGEALAQGLFTAMQRLF-SLDREEIFDIGK 60

Query: 80  IVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS 126
           +  ++    ++    ++  L+   +  +            L    P+
Sbjct: 61  LFDIIGGSLVNLLLPLLMILITLFIAALIGAAGVGGLTFPLKRRCPN 107


>gi|313610165|gb|EFR85468.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
          F2-208]
          Length = 38

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 6  APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILA 42
          A DNKTE  + ++I+ A NEGN   S+E +   S+L 
Sbjct: 2  AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLI 38


>gi|213420256|ref|ZP_03353322.1| surface presentation of antigens protein SpaS [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 50

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 7  PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52
            NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S
Sbjct: 2  SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS 47


>gi|188595908|pdb|2VT1|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Spa40, The
           Specificity Switch For The Shigella Flexneri Type Iii
           Secretion System
          Length = 52

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 221 KLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITN 271
            + M KQEIK E  +  G+   K+R++ +    +  +       + +++ N
Sbjct: 2   DMMMDKQEIKREYIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMN 52


>gi|331005471|ref|ZP_08328850.1| hypothetical protein IMCC1989_1995 [gamma proteobacterium IMCC1989]
 gi|330420747|gb|EGG95034.1| hypothetical protein IMCC1989_1995 [gamma proteobacterium IMCC1989]
          Length = 94

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 277 LALRYIQTENDAPVLVAKGQNLIAKKMRKIAY--EHNIPIFEEPSLARSLFKQVPINSAI 334
           + LRY + E   P ++ KG    A+ +    +  +    I +   LA+ L+K   I++ I
Sbjct: 12  VGLRYKKDEG-LPRVILKGAGHFAEDIIDKGHNLKKGPLIIQNELLAKQLYKMS-IDTEI 69

Query: 335 PPVFYKAVAQLIYKIY 350
            P  ++ VA ++  +Y
Sbjct: 70  RPELFELVATVLTHLY 85


>gi|313639094|gb|EFS04070.1| flagellar biosynthesis protein FlhB [Listeria seeligeri FSL
          S4-171]
          Length = 42

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 6  APDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACL 44
          A DNKTE  + ++I+ A NEGN   S+E +   S+L   
Sbjct: 2  AKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVA 40


>gi|213021866|ref|ZP_03336313.1| surface presentation of antigens protein SpaS [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 61

 Score = 56.4 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 7  PDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52
            NKTE P+ K++ED+  +G +  S++  +    L  + YL+ + S
Sbjct: 2  SSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGS 47


>gi|229916629|ref|YP_002885275.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp.
           AT1b]
 gi|229468058|gb|ACQ69830.1| flagellar biosynthesis (FlhS-related protein) [Exiguobacterium sp.
           AT1b]
          Length = 96

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A  +RY +T + APV+VA+G   +A+K+ + A    + +  + SL       + +  AIP
Sbjct: 13  AAVVRYDETTDKAPVVVARGTGAVAEKILQEARARGVAVENDHSLLGH-LLDLDLGDAIP 71

Query: 336 PVFYKAVAQLI 346
           P  Y  +A+++
Sbjct: 72  PQLYDVMAEVL 82


>gi|228900352|ref|ZP_04064581.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
 gi|228859239|gb|EEN03670.1| Flagellar biosynthetic protein [Bacillus thuringiensis IBL 4222]
          Length = 44

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + E   LARSL+ QV  +  IP   Y AV +++  +  
Sbjct: 1   MVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQ 38


>gi|315453181|ref|YP_004073451.1| flagellar biosynthesis protein flhB2 [Helicobacter felis ATCC
           49179]
 gi|315132233|emb|CBY82861.1| flagellar biosynthesis protein flhB2 [Helicobacter felis ATCC
           49179]
          Length = 88

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y   ++ AP +VA G  ++A+ +   A   ++P+F   +L  SL   V +++ IP
Sbjct: 6   AVALAYNVGQDSAPKVVASGVGVVARAIVDKAKAFDVPLFCNEALVESLL-DVRLDTPIP 64

Query: 336 PVFYKAVAQLIYKI 349
           P  Y +V ++   +
Sbjct: 65  PELYASVVEVFIWL 78


>gi|238759387|ref|ZP_04620552.1| hypothetical protein yaldo0001_4790 [Yersinia aldovae ATCC 35236]
 gi|238702414|gb|EEP94966.1| hypothetical protein yaldo0001_4790 [Yersinia aldovae ATCC 35236]
          Length = 103

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 9   NKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLAS 68
            KTE P+ KKI D+  +G +  S++      ++A    +  F    +  + S L  +L S
Sbjct: 3   EKTEKPTDKKIRDSAKKGQSFKSKDMVAAVVLVAGAFAVSGF--SSLMGLGSLLQKILLS 60

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFM 103
            +   +E       LL  L       V+P LL   
Sbjct: 61  PSAIGVE------ALLDKLYSLFLLAVVPVLLACF 89


>gi|331005339|ref|ZP_08328725.1| hypothetical protein IMCC1989_1712 [gamma proteobacterium IMCC1989]
 gi|330420854|gb|EGG95134.1| hypothetical protein IMCC1989_1712 [gamma proteobacterium IMCC1989]
          Length = 105

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A+AL Y    + AP + AKG+   A+++  IA EH + + E  +L       + +   IP
Sbjct: 21  AVALFYD--GDSAPTISAKGEGNTAQEIIDIAREHGVTLCENKALLEL-LMTLELGEEIP 77

Query: 336 PVFY 339
              Y
Sbjct: 78  ENLY 81


>gi|229138470|ref|ZP_04267059.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
 gi|228645007|gb|EEL01250.1| Flagellar biosynthetic protein [Bacillus cereus BDRD-ST26]
          Length = 44

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 314 IFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           + E   LARSL+ QV  + AIP   Y AV +++  +  
Sbjct: 1   MVENRPLARSLYYQVEEDMAIPEDLYVAVIEVMRYLIQ 38


>gi|312876516|ref|ZP_07736499.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311796727|gb|EFR13073.1| flagellar biosynthetic protein FlhB [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 52

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 10 KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIY 46
          KTE  + +K ++A   G    SRE +   ++L  +++
Sbjct: 16 KTEKATRRKRQEARKRGMVAKSREVTSAFALLISVLF 52


>gi|323183410|gb|EFZ68807.1| surface presentation of antigens protein spaS domain protein
           [Escherichia coli 1357]
          Length = 98

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 290 VLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           ++  +  N +A  +RK A E  IPI  +  LAR ++        +
Sbjct: 1   MISVRETNEVALAVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 45


>gi|172058438|ref|YP_001814898.1| flagellar biosynthesis, FlhS-related protein [Exiguobacterium
           sibiricum 255-15]
 gi|171990959|gb|ACB61881.1| flagellar biosynthesis, FlhS-related protein [Exiguobacterium
           sibiricum 255-15]
          Length = 96

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 276 ALALRYIQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
           A  LRY +   +AP++VA+     A ++ + A    + I ++ SL       + + +AIP
Sbjct: 13  AAVLRYDEASGNAPIVVARATGAAADRILQEARASGVAIEQDTSLLGH-LLDLDLGTAIP 71

Query: 336 PVFYKAVA 343
           P  Y  +A
Sbjct: 72  PQLYDVMA 79


>gi|313610159|gb|EFR85464.1| flagellar biosynthesis protein FlhB [Listeria monocytogenes FSL
           F2-208]
          Length = 53

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 305 KIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLI 346
           ++A    +P+     LARS++     +  I    YK V +++
Sbjct: 1   QVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVIEVM 42


>gi|7350919|gb|AAF61287.1| HrpC1 [Xanthomonas oryzae pv. oryzae]
          Length = 21

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 5/26 (19%)

Query: 1  MSENDAPDNKTEAPSSKKIEDALNEG 26
          MSE      KTE P+ KK+ DA  +G
Sbjct: 1  MSE-----EKTEKPTEKKLRDARKDG 21


>gi|229088879|ref|ZP_04220342.1| Na+/H+ antiporter NhaC [Bacillus cereus Rock3-44]
 gi|228694438|gb|EEL47951.1| Na+/H+ antiporter NhaC [Bacillus cereus Rock3-44]
          Length = 480

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 59/184 (32%), Gaps = 4/184 (2%)

Query: 28  APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87
              S  A+L    +  LI    F       +   + ++  +        ++ ++   T  
Sbjct: 65  IAKSMSATLILITVGALIGTWMFSGTIPMMIFYGIELINPNYLFVTAFLVTALISTFTGT 124

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
           S  ++  V   ++   M    S  I    V+           +S    +  + + +NL  
Sbjct: 125 SWGSAGTVGVAIMGIAMVQGVSLPITAGAVVAGAFFGDKLSPLSDTTNLSPVVAGSNLYE 184

Query: 148 FMKSFVK----IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            ++  +       L+G ++   +  + +T   F      ++           +++I+  +
Sbjct: 185 HIRHLLYTTIPASLIGLVVYFIVGWSTYTSNAFDREKIEAMTSALTAMFHWNVLLIVPVL 244

Query: 204 ATLT 207
             L 
Sbjct: 245 IVLV 248


>gi|332878715|ref|ZP_08446432.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683352|gb|EGJ56232.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 471

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 44  LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL-------VI 96
           ++ ++FF    I  V            +   E+ S + FLL  + L    +        I
Sbjct: 125 VLSIVFFAFIAIRIVGLLWAQYFDYGVRILFEEESIVFFLLVPIILLGFSVSQRQQFSFI 184

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM-----K- 150
                  +  + + ++     ++    KP F  ++L +G        +L   +     K 
Sbjct: 185 AICFKGFLLLLVANVVFYSFAISAEGTKPFFSFLTLNKGYLSDNEGFSLYEILFWTRFKH 244

Query: 151 -SFVK-IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
            SF+  IILV   +   L + Y T++       +++L   F  + +  + I+ +   +  
Sbjct: 245 PSFLSWIILVVGGLGFFLWKKYRTIITTPEVIAYALLLFGFIFMMQARVNIIAYFVVIAF 304

Query: 209 LDIGWSYHQWYSKLK 223
                  H +  +LK
Sbjct: 305 FVYLSVTHLFSKRLK 319


>gi|323342205|ref|ZP_08082437.1| hypothetical protein HMPREF0357_10617 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463317|gb|EFY08511.1| hypothetical protein HMPREF0357_10617 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 603

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 42  ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG--- 98
           A  +  + F       + S  + L  +     +     ++F+     ++ + + IPG   
Sbjct: 45  AVTVLFIRFGLEKPQVLMSSAYTLSFALKFVLVSIPVGLLFMFLQAIINNTIIFIPGDYV 104

Query: 99  -----------LLLFMMFGIGSYLIQRIPVLNLNHVKPS---FKRVSLREGIKRIYSINN 144
                      L++ ++ G   +   R        + P    F  +S  +G         
Sbjct: 105 RTRGHRIVNSILVILIVIGAAFFFFSRWFTAFFGALTPEQFIFNLISPVKGTGDSV---- 160

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           +   +K  VK  LVG +  + L       L     +   ++         ++I I+L + 
Sbjct: 161 MTELLKPIVKTALVGIVFALILLNKKD--LHIFRKHRREVITAKQLRTSTLIIGIVLALV 218


>gi|307166106|gb|EFN60358.1| Chitin synthase 8 [Camponotus floridanus]
          Length = 1627

 Score = 44.0 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 85/216 (39%), Gaps = 24/216 (11%)

Query: 57   SVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFG--IGSYLIQR 114
            ++ + + +L+ +    K+ D   ++++   + L    ++ PG +  M+ G  + ++ I  
Sbjct: 894  TIANIMDLLMDAKRTIKINDNISLLYIFYQILLMGGTILGPGTIFLMLVGAFVAAFKIDN 953

Query: 115  IPVLNLNHVKPSFKRV--SLREGIKRIYSINNLVNFMKSFVKIILVG------------- 159
                  N +      +     +   ++     L       +  ++VG             
Sbjct: 954  WTSFYYNIIPILLFMIVCFTCKANMQLLCAQILSTAYAMIMMAVIVGTALQLGEDGIGSP 1013

Query: 160  -TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
              I  ISL+ ++F            I+    + +    + +LL + ++  L++  S+   
Sbjct: 1014 SAIFLISLSSSFFIAACLHPQEFWCIVPGIIYLLSIPCMYLLLILYSIINLNVV-SWGTR 1072

Query: 219  YSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRI 254
              + K +K+E++ E +++      + ++K+  +S +
Sbjct: 1073 EVQTKKTKKELEQEKREAE-----EAKRKAKQKSLL 1103


>gi|168180065|ref|ZP_02614729.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum NCTC 2916]
 gi|182669160|gb|EDT81136.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum NCTC 2916]
          Length = 629

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++  ++         +  +L         K +     IK  +SI  LV+ +
Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180
           K+F+ I  + +I   S+   Y  M  F++ +
Sbjct: 159 KTFILIYFIVSISGASIIYRYELMDLFMAES 189


>gi|170017166|ref|YP_001728085.1| putative glycerophosphodiester phosphodiesterase [Leuconostoc
           citreum KM20]
 gi|169804023|gb|ACA82641.1| Putative glycerophosphodiester phosphodiesterase [Leuconostoc
           citreum KM20]
          Length = 616

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 73/190 (38%), Gaps = 6/190 (3%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           + +    ++ +       I  + + +   +           ++I+ +L +   +A  ++ 
Sbjct: 31  WFAYFFLVLAVNSLIINLILPICNYVMRFILYVNDIPFLSYTNILLILIYQPFAAIEIIF 90

Query: 97  PGLLLFMMFGI-GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
             ++LF    +  S+LIQ +  + + H       +++ +   +     ++ NF+      
Sbjct: 91  LVIVLFFGTFLHFSFLIQGVMYIKVYH---RLDWINIIKITGKDLGKISVFNFLIYAFYF 147

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
           +L+  I  +     + + +   +     IL +   +   V I I+    +L +L +    
Sbjct: 148 VLILPISGVFFKSPFISKVKLPNFLLDFILSNTILSTLLVAIYIICLYFSLRMLMVLP-- 205

Query: 216 HQWYSKLKMS 225
             ++ K K+S
Sbjct: 206 LTFFEKQKIS 215


>gi|226948671|ref|YP_002803762.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum A2 str. Kyoto]
 gi|226843883|gb|ACO86549.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum A2 str. Kyoto]
          Length = 629

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++  ++         +  +L         K +     IK  +SI  LV+ +
Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180
           K+F+ I  + +I   S+   Y  M  F++ +
Sbjct: 159 KTFILIYFIVSISGASIIYRYELMDLFMAES 189


>gi|320202502|gb|EFW77072.1| surface presentation of antigens protein SpaS [Escherichia coli
           EC4100B]
          Length = 89

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +A  +RK A E  IPI  +  LAR ++        +
Sbjct: 1   MALGVRKYAKEIGIPIITDKKLARKIYATHRRYDYV 36


>gi|148379368|ref|YP_001253909.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932651|ref|YP_001383744.1| peptide ABC transporter permease [Clostridium botulinum A str. ATCC
           19397]
 gi|153936934|ref|YP_001387294.1| peptide ABC transporter permease [Clostridium botulinum A str.
           Hall]
 gi|148288852|emb|CAL82936.1| putative ABC transporter, permease protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152928695|gb|ABS34195.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932848|gb|ABS38347.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum A str. Hall]
          Length = 629

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++  ++         +  +L         K +     IK  +SI  LV+ +
Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180
           K+F+ I  + +I   S+   Y  +  F++ +
Sbjct: 159 KTFILIYFIVSISGASIIYRYELIDLFMAES 189


>gi|170759534|ref|YP_001786781.1| peptide ABC transporter permease [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406523|gb|ACA54934.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 629

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++  ++         +  +L         K +     IK  +SI  LV+ +
Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180
           K+F+ I  + +I   S+   Y  +  F++ +
Sbjct: 159 KTFILIYFIVSISGASIIYRYELIDLFMAES 189


>gi|186682344|ref|YP_001865540.1| hypothetical protein Npun_F1945 [Nostoc punctiforme PCC 73102]
 gi|186464796|gb|ACC80597.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 288

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 15/154 (9%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI-VFLLTHLSLSAS 92
              F+S+L  L   LFF              L  +      +    + + +      +  
Sbjct: 12  LGKFTSVLGLLGAALFFAGWIYRWSYFYFFQLELNTLDLPAQSFLIVPLQIFLGDGWTIC 71

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL------- 145
           +  I   +  +      +LI+ I    ++  +    R+      KR ++   L       
Sbjct: 72  KTAIAFFITAIAIQATLWLIKIISETVVSASQLLLSRIISATQYKRSWTAKQLKSLAEFG 131

Query: 146 ------VNFMKSFV-KIILVGTIITISLTENYFT 172
                 V F++S V +I++V  ++ +      + 
Sbjct: 132 FGQLRSVEFLRSLVNEIVIVSWVLIVIFWLARWQ 165


>gi|330885029|gb|EGH19178.1| type III secretion component [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 39

 Score = 42.9 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 18 KIEDALNEGNAPISREASLFSSILACLIYLLFFFS 52
          K+ DA  +G    S++      IL C + +     
Sbjct: 1  KLRDARKKGQVAKSQDLVSGMVILMCTLCISVLLP 35


>gi|168184288|ref|ZP_02618952.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum Bf]
 gi|237794744|ref|YP_002862296.1| peptide ABC transporter permease [Clostridium botulinum Ba4 str.
           657]
 gi|182672634|gb|EDT84595.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum Bf]
 gi|229260903|gb|ACQ51936.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum Ba4 str. 657]
          Length = 629

 Score = 42.9 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 72/180 (40%), Gaps = 20/180 (11%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKSFSGASVIIALFVFIFIWYSNSFFIKKRKKEIGLYSMLGIKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++   +         +  +L        F+ +     IK  +SI  L + +
Sbjct: 108 ---ETMTMGVIALAIGIFLGAFFSKGFILVF------FRLIDAENIIKTGFSIKALFSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN-----PHSILYHAFFTVRKVLIMILLFIA 204
           K+F+ I  V +I   S+   Y  +  F++ +     P +    A  ++  +L   +L+I 
Sbjct: 159 KTFILIYFVVSISGASIIYRYELIDLFMAESKREKEPKASKVKAVLSLIFLLGGYILYIL 218


>gi|23098997|ref|NP_692463.1| flagellar biosynthesis [Oceanobacillus iheyensis HTE831]
 gi|22777225|dbj|BAC13498.1| flagellar biosynthesis [Oceanobacillus iheyensis HTE831]
          Length = 41

 Score = 42.5 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 324 LFKQVPINSAIPPVFYKAVAQLIYKIYH 351
           +  ++ IN +IP   Y AVA++   +Y 
Sbjct: 4   ILAELNINESIPDELYMAVAEVFAFVYQ 31


>gi|62261263|gb|AAX77972.1| unknown protein [synthetic construct]
          Length = 548

 Score = 42.5 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 137 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 192

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++      V 
Sbjct: 193 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKMSWFKGFVV 252

Query: 148 FMKSFVKIILVG--------------TIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            + + + I ++G               I  ++L   +  ML         ++      ++
Sbjct: 253 LLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERKRMIVALILIIQ 312

Query: 194 KVLIMIL 200
            ++  +L
Sbjct: 313 GIIFFVL 319


>gi|229823760|ref|ZP_04449829.1| hypothetical protein GCWU000282_01062 [Catonella morbi ATCC 51271]
 gi|229786799|gb|EEP22913.1| hypothetical protein GCWU000282_01062 [Catonella morbi ATCC 51271]
          Length = 447

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 14/205 (6%)

Query: 25  EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
           +GN    +++ +  S     + L      G       L  L A   Q K    SH +  L
Sbjct: 89  KGNTASWKDSWVLLSACLAFLSLSLALRYG-------LQWLKAQDDQNKYFAASHGLIFL 141

Query: 85  THLSLSASRLVIP---GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
               L      +P   G+   ++  +  +L     + +       F R+  R  +  +  
Sbjct: 142 AQGVLLLLGTKLPYEWGVAALVVAILAGWLAPFYFLRDRQVPALDFDRLKDRTSLMTMMY 201

Query: 142 INNLVNF----MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
              LV        S     L+G I+   L  +Y   +D +            ++   ++I
Sbjct: 202 SAGLVVLSLGTFLSLETTTLLGLILVACLVLHYKVQIDRVPQGADQSAAGFIYSHYVIMI 261

Query: 198 MILLFIATLTVLDIGWSYHQWYSKL 222
            + L I  L      +        L
Sbjct: 262 GLSLVIIALGGFMTPYVRISHIVDL 286


>gi|159480832|ref|XP_001698486.1| xanthine/uracil/vitamin C permease [Chlamydomonas reinhardtii]
 gi|158282226|gb|EDP07979.1| xanthine/uracil/vitamin C permease [Chlamydomonas reinhardtii]
          Length = 660

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 11/169 (6%)

Query: 24  NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83
            +GN P S   ++          L         +   +    +    +  +  I   +F 
Sbjct: 399 EKGNMPRS---NMAFIADGFGTMLGGLLGSSALTTYVESASAVREGGRTGITAIVCALFF 455

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
                LS    VIP +    +  +   LI    V  +N                 +  + 
Sbjct: 456 FAACFLSPLFSVIPAIATGPILALIGVLIFMPSVFEINWH----DITDAIPAFVTMLGMP 511

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192
               F  +    I+ G ++ + +    + + DF  + P + LY  + T 
Sbjct: 512 ----FTHNIAYGIIGGLLVHVIIKFFTYQLFDFQHSWPGAALYRRWATA 556


>gi|329726145|gb|EGG62617.1| putative membrane protein [Staphylococcus epidermidis VCU144]
          Length = 383

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 35/248 (14%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +G    S        ILA +  +LF     I  + + L+ L  S     L+    I 
Sbjct: 108 AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 158

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138
                + +  +  ++  L+   +  I  + +    +           R    +L+EG K 
Sbjct: 159 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 218

Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           I         F    + I L+ +II   L      +   +S      +      V  VL 
Sbjct: 219 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 278

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
           + L +I    +++                           G+  +K++++   +   +  
Sbjct: 279 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRRHKNKDINKGN 316

Query: 258 MMEATSRA 265
           + +     
Sbjct: 317 VNDKVDTT 324


>gi|27468667|ref|NP_765304.1| lytic regulatory protein [Staphylococcus epidermidis ATCC 12228]
 gi|293366114|ref|ZP_06612802.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316214|gb|AAO05348.1|AE016749_294 lytic regulatory protein [Staphylococcus epidermidis ATCC 12228]
 gi|291319837|gb|EFE60195.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735699|gb|EGG71982.1| hypothetical protein SEVCU028_1481 [Staphylococcus epidermidis
           VCU028]
          Length = 334

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 35/247 (14%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +G    S        ILA +  +LF     I  + + L+ L  S     L+    I 
Sbjct: 59  AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 109

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138
                + +  +  ++  L+   +  I  + +    +           R    +L+EG K 
Sbjct: 110 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 169

Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           I         F    + I L+ +II   L      +   +S      +      V  VL 
Sbjct: 170 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 229

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
           + L +I    +++                           G+  +K++++   +   +  
Sbjct: 230 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRRHKNKDINKGN 267

Query: 258 MMEATSR 264
           + +    
Sbjct: 268 VNDKVDT 274


>gi|332671779|ref|YP_004454787.1| LacI family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340817|gb|AEE47400.1| transcriptional regulator, LacI family [Cellulomonas fimi ATCC 484]
          Length = 340

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 239 NPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHYAL--ALRYIQTENDAPVLVAKGQ 296
           +  +  R++  A      ++      A ++ +  TH     A+R +      P +V    
Sbjct: 197 DAHLTARERREAFVGALAELGIEVPPAAVVASAFTHEGGEDAMRTLLRSGPLPEVVFAVN 256

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLA 321
           +++A      A +  + +  + +LA
Sbjct: 257 DVMALGALAAARDAGVEVPRDVALA 281


>gi|57867657|ref|YP_189322.1| lytic regulatory protein [Staphylococcus epidermidis RP62A]
 gi|251812139|ref|ZP_04826612.1| possible lytic regulatory protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|57638315|gb|AAW55103.1| lytic regulatory protein, putative [Staphylococcus epidermidis
           RP62A]
 gi|251804319|gb|EES56976.1| possible lytic regulatory protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|329734182|gb|EGG70500.1| putative membrane protein [Staphylococcus epidermidis VCU045]
          Length = 383

 Score = 42.1 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 35/247 (14%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +G    S        ILA +  +LF     I  + + L+ L  S     L+    I 
Sbjct: 108 AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 158

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138
                + +  +  ++  L+   +  I  + +    +           R    +L+EG K 
Sbjct: 159 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 218

Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           I         F    + I L+ +II   L      +   +S      +      V  VL 
Sbjct: 219 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 278

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
           + L +I    +++                           G+  +K++++   +   +  
Sbjct: 279 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRRHKNKDINKGN 316

Query: 258 MMEATSR 264
           + +    
Sbjct: 317 VNDKVDT 323


>gi|319399630|gb|EFV87885.1| lytic regulatory protein [Staphylococcus epidermidis FRI909]
          Length = 334

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 35/248 (14%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +G    S        ILA +  +LF     I  + + L+ L  S     L+    I 
Sbjct: 59  AFKKGKYAKS-------VILALITLVLFIIIVLILMLLNKLYNLALSPLFIGLQQ--SIS 109

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138
                + +  +  ++  L+   +  I  + +    +           R    +L+EG K 
Sbjct: 110 GYENPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 169

Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           I         F    + I L+ +II   L      +   +S      +      V  VL 
Sbjct: 170 IKNGKKTWFKFFIGVLLIGLLASIINRPLLFGVQYLTSSMSQMVAQTIVIIARIVSIVLR 229

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
           + L +I    +++                  +K       G+  +K++++   +   +  
Sbjct: 230 LCLYYILIFGIINYF----------------VKR------GDQPVKSKRRHKNKDVNKDT 267

Query: 258 MMEATSRA 265
           + +     
Sbjct: 268 VNDKVDTT 275


>gi|242241557|ref|ZP_04796002.1| lytic regulatory protein [Staphylococcus epidermidis W23144]
 gi|242235011|gb|EES37322.1| lytic regulatory protein [Staphylococcus epidermidis W23144]
          Length = 334

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 35/248 (14%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +G    S        ILA +  +LF     I  + + L+ L  S     L+    I 
Sbjct: 59  AFKKGKYAKS-------VILALITLVLFIIIVLILMLLNKLYNLALSPLFIGLQQ--SIS 109

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138
                + +  +  ++  L+   +  I  + +    +           R    +L+EG K 
Sbjct: 110 GYENPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 169

Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           I         F    + I L+ +II   L      +   +S      +      V  VL 
Sbjct: 170 IKNGKKTWFKFFIGVLLIGLLASIINRPLLFGVQYLTSSMSQMVAQTIVIIARIVSIVLR 229

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHK 257
           + L +I    +++                  +K       G+  +K++++   +   +  
Sbjct: 230 LCLYYILIFGIINYF----------------VKR------GDQPVKSKRRHKNKDVNKDT 267

Query: 258 MMEATSRA 265
           + +     
Sbjct: 268 VNDKVDTT 275


>gi|294674738|ref|YP_003575354.1| sensor histidine kinase [Prevotella ruminicola 23]
 gi|294473211|gb|ADE82600.1| putative sensor histidine kinase [Prevotella ruminicola 23]
          Length = 349

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 79  HIVFLLTHLSLSASRLVIPGLLLFMM-----FGIGSYLIQRIPVLNLNHVKP-SFKRVSL 132
           +I  LLT L + A  ++   L  F+          S+ +    + +   +   +F     
Sbjct: 8   NIWLLLTQLGVWAIIILAMPLATFLSTQDLHATKTSFFVVWGILHSPFVIYFINFYLFGP 67

Query: 133 REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192
               +R +    L N +      IL+       L  +   +   I+  P+  +      +
Sbjct: 68  FLFFRRRFWWFALCNLL-----TILLMNSQFFMLWFHRDRIPHEITMTPNMWIGIFAGML 122

Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDE-IKQSY 237
             +L+   +    + +        + + +++  KQ++KDE  K + 
Sbjct: 123 LFMLLNCFVGAIAIGI--------RHFMRIRQIKQQLKDEKAKNTE 160


>gi|322805708|emb|CBZ03273.1| ABC transporter, permease protein [Clostridium botulinum H04402
           065]
          Length = 629

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++  ++         +  +L         K +     IK  +SI  LV+ +
Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFYKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180
           K+F+ I  + +I   S+   Y  +  F++ +
Sbjct: 159 KTFILIYFIVSISGASIIYRYELIDLFMAES 189


>gi|257791170|ref|YP_003181776.1| hypothetical protein Elen_1418 [Eggerthella lenta DSM 2243]
 gi|317488097|ref|ZP_07946674.1| hypothetical protein HMPREF1023_00372 [Eggerthella sp. 1_3_56FAA]
 gi|257475067|gb|ACV55387.1| protein of unknown function DUF214 [Eggerthella lenta DSM 2243]
 gi|316912805|gb|EFV34337.1| hypothetical protein HMPREF1023_00372 [Eggerthella sp. 1_3_56FAA]
          Length = 730

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 78/224 (34%), Gaps = 30/224 (13%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS-HIVFLLTHLSLS 90
           +   +FS ++AC++  L  ++ G   +         +     +   S  ++ LL  +++ 
Sbjct: 60  QMLGMFSVVIACVLGFLVLYANGF--LIRRRKQEFGTYLMLGMNPSSVSVIVLLETVAVG 117

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR------------VSLREGIKR 138
              L +   L F +    S++   +  + +   +  F              +    G+  
Sbjct: 118 LVSLGVGLALGFALSQGLSFVTAGLFNIQMEQYRFVFSTNAFLLTLGCFVLIFAVTGLFN 177

Query: 139 IYSIN--NLVNFMKSFVK----------IILVGTIITI-SLTENYFTMLDFISANPHSIL 185
             SI    L++ + +  K          I LVG +  +  +  +Y T++D          
Sbjct: 178 TLSIRRYKLIDLLSARSKNARFRVRNPWISLVGFLAAVAVIAWSYVTLVDNGLMQFDEGF 237

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM--SKQ 227
           + A   +     +    +A   +  I  +   ++  L M  ++Q
Sbjct: 238 WRATALMVAGTFLFFWSLAGFALAAIERTRGIYFKGLAMFTTRQ 281


>gi|325832891|ref|ZP_08165564.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1]
 gi|325485756|gb|EGC88220.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1]
          Length = 730

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 78/224 (34%), Gaps = 30/224 (13%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDIS-HIVFLLTHLSLS 90
           +   +FS ++AC++  L  ++ G   +         +     +   S  ++ LL  +++ 
Sbjct: 60  QMLGMFSVVIACVLGFLVLYANGF--LIRRRKQEFGTYLMLGMNPSSVSVIVLLETVAVG 117

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR------------VSLREGIKR 138
              L +   L F +    S++   +  + +   +  F              +    G+  
Sbjct: 118 LVSLGVGLALGFALSQGLSFVTAGLFNIQMEQYRFVFSTNAFLLTLGYFVLIFAVTGLFN 177

Query: 139 IYSIN--NLVNFMKSFVK----------IILVGTIITI-SLTENYFTMLDFISANPHSIL 185
             SI    L++ + +  K          I LVG +  +  +  +Y T++D          
Sbjct: 178 TLSIRRYKLIDLLSARSKNARFRVRNPWISLVGFLAAVAVIAWSYVTLVDNGLMQFDEGF 237

Query: 186 YHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKM--SKQ 227
           + A   +     +    +A   +  I  +   ++  L M  ++Q
Sbjct: 238 WRATALMVAGTFLFFWSLAGFALAAIERTRGIYFKGLAMFTTRQ 281


>gi|322435980|ref|YP_004218192.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX9]
 gi|321163707|gb|ADW69412.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX9]
          Length = 698

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 57/182 (31%), Gaps = 26/182 (14%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
            +F ++LA  ++L      G + V   +  +       K +  +   F     ++ A+  
Sbjct: 386 PVFIALLASGLFLFALSLAGQFDVGLSMTSV--GGDLAKKQGYTGSFFTGVLATIVATPC 443

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHV-----------KPSFKRVSLREGIKRIYSIN 143
             P +   + F +         V     +           +P++ R+  R G        
Sbjct: 444 TAPLMGAAIGFALAQPAGITFAVFTALGLGLAVPYLVLSFQPAWTRILPRPG-------- 495

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
             +  +K    + L  T+I ++            SA P     H    +   L++ +   
Sbjct: 496 AWMEVLKQLTAVPLFATVIWLAWVYG-----QLFSAQPGEAADHIARLLCCFLVLAIAGW 550

Query: 204 AT 205
           A 
Sbjct: 551 AL 552


>gi|323703395|ref|ZP_08115044.1| protein of unknown function DUF583 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531664|gb|EGB21554.1| protein of unknown function DUF583 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 485

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 29/220 (13%)

Query: 26  GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
           G   + R+ +   +++   I +L     GI +     +          +E+IS       
Sbjct: 286 GQVIV-RDNNPLFTLVLLWIPVLL----GILATLFITYGFFTKDATTSIENISGQPLRSI 340

Query: 86  HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK--RIYSIN 143
            L   +  L +P + L  +  IG  +   + +  +         V  + G K    + +N
Sbjct: 341 WLGFVSVVLGLPLMFLLFISIIGIPVSISLGIALILASLVGLSGVCQKIGQKVSAAFGLN 400

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
           +L    +  + I+LV  +I I                   IL      V  ++ +  + +
Sbjct: 401 SLSQIKEMLLGILLVAHLIWI------------------PILGWIVLLVLWLMGLGSVTM 442

Query: 204 ATLTVLDIGWSYHQWYSKLK----MSKQEIKDEIKQSYGN 239
                L   W   +   K +     S+  +++E K S  N
Sbjct: 443 LWWPRLKTRWQSWRQSRKTRDTGNQSETTVEEEPKDSDEN 482


>gi|229160759|ref|ZP_04288751.1| Na+/H+ antiporter NhaC [Bacillus cereus R309803]
 gi|228622774|gb|EEK79608.1| Na+/H+ antiporter NhaC [Bacillus cereus R309803]
          Length = 460

 Score = 41.3 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 60/183 (32%), Gaps = 4/183 (2%)

Query: 28  APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87
              S  A+L    +  LI    F       V   + ++  +        ++ ++   T  
Sbjct: 45  ITKSMSATLILITVGMLIGTWMFSGTIPMMVFYGIELINPNYLFVTAFIVTALISTFTGT 104

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
           S  ++  V   ++   M    S  I    V+           +S    +  + + +NL  
Sbjct: 105 SWGSAGTVGVAIMGIAMVQGVSLPITAGAVVAGAFFGDKLSPLSDTTNLSPVVAGSNLYE 164

Query: 148 FMKSFVKIIL----VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            ++  +   +    +G ++   + ++ +T   F      ++           +++I+  +
Sbjct: 165 HIRHLLYTTIPASFIGLVVYFIVGKSTYTSNAFDKGKIEAMTSALTAMFHWNVLLIVPIL 224

Query: 204 ATL 206
             L
Sbjct: 225 IVL 227


>gi|227543300|ref|ZP_03973349.1| hypothetical protein HMPREF0293_2619 [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227180913|gb|EEI61885.1| hypothetical protein HMPREF0293_2619 [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 396

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 113 QRIPVLNLNHVKPSFKR----VSLREGIKRIYSINNLV--NFMKSFVKIILVGTIITISL 166
               V + + + P + R    + L  G+   + + +L   ++    + + ++G I+ + L
Sbjct: 170 GFGGVDSNDPLPPDWDRRRKIILLVAGLA--FPVLSLFSGDYAGQMLGVTVIGGILGVVL 227

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI---ATLTVLDIGWSYHQWYSKLK 223
               +            I+  A+  V   L    +       + VL +      W  +L+
Sbjct: 228 VWMNYEHYKSGGKAHGCIVETAWQMVFFGLWFYAIAFNFPMGVAVLYVAIKRRVWARQLR 287

Query: 224 --MSKQEIKDEI 233
             M KQ+ + E 
Sbjct: 288 REMKKQQEEHEY 299


>gi|145223704|ref|YP_001134382.1| apolipoprotein N-acyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|145216190|gb|ABP45594.1| apolipoprotein N-acyltransferase [Mycobacterium gilvum PYR-GCK]
          Length = 560

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 19/216 (8%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M E  A  +  E P+      A   G A + R   L ++I+A L   + F   G + +  
Sbjct: 1   MGETAADADAPERPT-----RARRFGQAVVDRLPRLTAAIVAGLALCVSFPPFGWWYIAI 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--LLFMMFGIGSYLIQRIPVL 118
               +L     R+   ++          L+    ++P +  L+  +  +   +++ +   
Sbjct: 56  LAFAVLGWVLTRERTTVAGGAGYGLLFGLAFYVPLLPWISGLVGAVPWLALSVVEALFCA 115

Query: 119 NLNHVKPSFKRVS-LREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYFTMLDF 176
               +    +R+         ++S      ++KS V        ++  S +E+    L +
Sbjct: 116 LFGMLAVVVRRLPGWPLWFAGLWSAQ---EWLKSTVPFGGFPWGVVGFSQSESPLLPLAY 172

Query: 177 ISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
           +   P         +   VL+   L    L V D  
Sbjct: 173 VGGAP-------LVSFALVLLAFSLGALVLGVADWW 201


>gi|332184002|gb|AEE26256.1| Di/tripeptide permease DtpA [Francisella cf. novicida 3523]
          Length = 512

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 45/206 (21%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 112 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 167

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 168 VSMLLTPIIAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 219

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
              S+ K  ++L+G  I I +  N        ++                   I++ IA 
Sbjct: 220 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTS-------------------IVVVIAI 257

Query: 206 LTVLDIGWSYHQWYSKLKMSKQEIKD 231
           L ++             K S+ E K 
Sbjct: 258 LALIYFFIQMF------KQSEHERKR 277


>gi|134301862|ref|YP_001121831.1| amino acid/peptide transporter (peptide:H+ symporter) [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049639|gb|ABO46710.1| amino acid/peptide transporter (Peptide:H+ symporter) [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|328676919|gb|AEB27789.1| Di/tripeptide permease DtpA [Francisella cf. novicida Fx1]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|134094671|ref|YP_001099746.1| hypothetical protein HEAR1448 [Herminiimonas arsenicoxydans]
 gi|133738574|emb|CAL61619.1| Conserved hypothetical protein, putative membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
           VK I     +  +L       L  + ++  S L     ++ K  ++++     + +    
Sbjct: 133 VKFIFF-DALGAALWSGSAIFLGSLFSSAVSDLLDILASLGKWGLVLVAVALAIYIARKW 191

Query: 213 WSYHQWYSKLKM---SKQEIKDEIKQSYGNP 240
           W  H +   L+M   S  E+   +KQ  GNP
Sbjct: 192 WQRHSFLKDLRMARISVDELDQLLKQ--GNP 220


>gi|118497424|ref|YP_898474.1| proton-dependent oligopeptide transporter (POT) family protein, di-
           or tripeptide:H+ symporter [Francisella tularensis
           subsp. novicida U112]
 gi|195536114|ref|ZP_03079121.1| proton-dependent oligopeptide transport [Francisella tularensis
           subsp. novicida FTE]
 gi|254374245|ref|ZP_04989727.1| proton-dependent oligopeptide transporter family protein
           [Francisella novicida GA99-3548]
 gi|118423330|gb|ABK89720.1| proton-dependent oligopeptide transporter (POT) family protein, di-
           or tripeptide:H+ symporter [Francisella novicida U112]
 gi|151571965|gb|EDN37619.1| proton-dependent oligopeptide transporter family protein
           [Francisella novicida GA99-3548]
 gi|194372591|gb|EDX27302.1| proton-dependent oligopeptide transport [Francisella tularensis
           subsp. novicida FTE]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|312983945|ref|ZP_07791294.1| amino acid/peptide transporter [Lactobacillus crispatus CTV-05]
 gi|310894622|gb|EFQ43695.1| amino acid/peptide transporter [Lactobacillus crispatus CTV-05]
          Length = 497

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 12/179 (6%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                + L   I L+   +  +    SD+   L S   R+ +    I     +L    + 
Sbjct: 106 LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 165

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146
            ++P       F I    +      +L  +   F  V    G K+  S  +L        
Sbjct: 166 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDR 225

Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
            + + + +K +++G ++   +      M  F   N  +++         + I   + + 
Sbjct: 226 GDLL-NIIKWVVIGFVVIALV---LAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 280


>gi|262046119|ref|ZP_06019082.1| di-tripeptide transporter [Lactobacillus crispatus MV-3A-US]
 gi|260573449|gb|EEX30006.1| di-tripeptide transporter [Lactobacillus crispatus MV-3A-US]
          Length = 497

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 12/179 (6%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                + L   I L+   +  +    SD+   L S   R+ +    I     +L    + 
Sbjct: 106 LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 165

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146
            ++P       F I    +      +L  +   F  V    G K+  S  +L        
Sbjct: 166 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDR 225

Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
            + + + +K +++G ++   +      M  F   N  +++         + I   + + 
Sbjct: 226 GDLL-NIIKWVVIGFVVIALV---LAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 280


>gi|56708047|ref|YP_169943.1| proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89256569|ref|YP_513931.1| proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. holarctica LVS]
 gi|110670518|ref|YP_667075.1| proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. tularensis FSC198]
 gi|115314999|ref|YP_763722.1| POT family proton dependent peptide transporter [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156502691|ref|YP_001428755.1| proton-dependent oligopeptide transporter (POT) family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167010033|ref|ZP_02274964.1| proton-dependent oligopeptide transport [Francisella tularensis
           subsp. holarctica FSC200]
 gi|224457134|ref|ZP_03665607.1| proton-dependent oligopeptide transporter (POT) family protein
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254367887|ref|ZP_04983907.1| proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. holarctica 257]
 gi|254370533|ref|ZP_04986538.1| proton-dependent oligopeptide transporter family protein
           [Francisella tularensis subsp. tularensis FSC033]
 gi|254874849|ref|ZP_05247559.1| proton-dependent oligopeptide transport family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|290953086|ref|ZP_06557707.1| proton-dependent oligopeptide transporter (POT) family protein
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295313717|ref|ZP_06804298.1| proton-dependent oligopeptide transporter (POT) family protein
           [Francisella tularensis subsp. holarctica URFT1]
 gi|56604539|emb|CAG45586.1| Proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89144400|emb|CAJ79690.1| Proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. holarctica LVS]
 gi|110320851|emb|CAL08969.1| Proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. tularensis FSC198]
 gi|115129898|gb|ABI83085.1| POT family proton dependent peptide transporter [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253697|gb|EBA52791.1| proton-dependent oligopeptide transport (POT) family protein
           [Francisella tularensis subsp. holarctica 257]
 gi|151568776|gb|EDN34430.1| proton-dependent oligopeptide transporter family protein
           [Francisella tularensis subsp. tularensis FSC033]
 gi|156253294|gb|ABU61800.1| proton-dependent oligopeptide transporter (POT) family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|254840848|gb|EET19284.1| proton-dependent oligopeptide transport family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159242|gb|ADA78633.1| proton-dependent oligopeptide transport [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|187931711|ref|YP_001891695.1| proton-dependent oligopeptide transporter (POT) family protein, di-
           or tripeptide:H+ symporter [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712620|gb|ACD30917.1| proton-dependent oligopeptide transporter (POT) family protein, di-
           or tripeptide:H+ symporter [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|254372785|ref|ZP_04988274.1| proton-dependent oligopeptide transporter family protein
           [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570512|gb|EDN36166.1| proton-dependent oligopeptide transporter family protein
           [Francisella novicida GA99-3549]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|170754972|ref|YP_001781045.1| peptide ABC transporter permease [Clostridium botulinum B1 str.
           Okra]
 gi|169120184|gb|ACA44020.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum B1 str. Okra]
          Length = 629

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++  ++         +  +L         K +     IK  +SI  LV+ +
Sbjct: 108 ---ETMTMGIIALVIGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180
           ++F+ I  + +I   S+   Y  M  F++ +
Sbjct: 159 RTFILIYFIVSISGASIIYRYELMDLFMAES 189


>gi|227878540|ref|ZP_03996473.1| di-tripeptide transporter [Lactobacillus crispatus JV-V01]
 gi|256843985|ref|ZP_05549472.1| di-tripeptide transporter [Lactobacillus crispatus 125-2-CHN]
 gi|256849451|ref|ZP_05554883.1| di-tripeptide transporter [Lactobacillus crispatus MV-1A-US]
 gi|293381799|ref|ZP_06627773.1| amino acid/peptide transporter (Peptide:H+ symporter)
           [Lactobacillus crispatus 214-1]
 gi|227861863|gb|EEJ69449.1| di-tripeptide transporter [Lactobacillus crispatus JV-V01]
 gi|256613890|gb|EEU19092.1| di-tripeptide transporter [Lactobacillus crispatus 125-2-CHN]
 gi|256713567|gb|EEU28556.1| di-tripeptide transporter [Lactobacillus crispatus MV-1A-US]
 gi|290921635|gb|EFD98663.1| amino acid/peptide transporter (Peptide:H+ symporter)
           [Lactobacillus crispatus 214-1]
          Length = 497

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 12/179 (6%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                + L   I L+   +  +    SD+   L S   R+ +    I     +L    + 
Sbjct: 106 LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 165

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146
            ++P       F I    +      +L  +   F  V    G K+  S  +L        
Sbjct: 166 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDK 225

Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
            + + + +K +++G ++   +      M  F   N  +++         + I   + + 
Sbjct: 226 GDLL-NIIKWVVIGFVVIALV---LAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 280


>gi|254369446|ref|ZP_04985458.1| proton-dependent oligopeptide transport family protein [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122396|gb|EDO66536.1| proton-dependent oligopeptide transport family protein [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L           L+    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPALDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  KR+S   G +++        
Sbjct: 167 VSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTIFYPKIKRISTEAGRQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|325290917|ref|YP_004267098.1| binding-protein-dependent transport systems inner membrane
           component [Syntrophobotulus glycolicus DSM 8271]
 gi|324966318|gb|ADY57097.1| binding-protein-dependent transport systems inner membrane
           component [Syntrophobotulus glycolicus DSM 8271]
          Length = 361

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 62/180 (34%), Gaps = 10/180 (5%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF---LLTHLSLSAS 92
           +F  +L      L      +      ++          L++++H++    LL H+  +  
Sbjct: 9   IFRMMLRLSGIFLVAVLWELLPRIGIVNHTFLPPLSVVLQEVAHLILTQHLLGHVLATLW 68

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
           RL++  +L  ++      ++          + P F+ +    G    +S+  +       
Sbjct: 69  RLMVGIVLAVLLAVPLGAVLGYWLPGAAVALNPLFRIL----GQINPFSLMTVFFLFLGV 124

Query: 153 ---VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
               K+++V  +    L  +  T +  +  +          +  ++ + +LL      +L
Sbjct: 125 GEKAKLVVVTWVAFWPLIHHTITGIQTVEPDLIKAARSMGMSRGRLFLNVLLPGTVPAIL 184


>gi|153938094|ref|YP_001390754.1| peptide ABC transporter permease [Clostridium botulinum F str.
           Langeland]
 gi|152933990|gb|ABS39488.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum F str. Langeland]
 gi|295318826|gb|ADF99203.1| peptide ABC transporter, Pep4E family, permease protein
           [Clostridium botulinum F str. 230613]
          Length = 629

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
           +S+  S  S I+A  +++  ++S   +       + L S    K ++I+ ++F       
Sbjct: 54  VSKAFSGASVIIALFVFMFIWYSNSFFIKKRKREIGLYSMLGVKKKNIAAMMFY------ 107

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
                +  G++  +M         +  +L         K +     IK  +SI  LV+ +
Sbjct: 108 ---ETMTMGIIALVMGAFLGTFFSKGFILIF------LKLIDAENIIKTTFSIKALVSTI 158

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISAN 180
           ++F+ I  + +I   S+   Y  +  F++ +
Sbjct: 159 RTFILIYFIVSISGASIIYRYELIDLFMAES 189


>gi|332361024|gb|EGJ38828.1| FmtA family protein [Streptococcus sanguinis SK1056]
          Length = 596

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 26  GNAPISRE---ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
           G+    ++    + ++ ++A ++ ++F     +     DL  L+    Q K      I  
Sbjct: 443 GDNFRVKDSEILADWAMLIAAVVGIVFSIILFLVRGGLDLFRLVFKKGQPKTPKKLRIWT 502

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSY---------LIQRIPVLNLNHVKPSFKRVSLR 133
            LT L+     L   GL+   +    SY               +L    + P F +    
Sbjct: 503 YLTSLAAVGVALNFYGLVAAFLASNRSYPYSIWPYIVFAVLGLILAGCAIYPLFSKARKG 562

Query: 134 EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENY 170
            G  R+     L+  MKS   + +V  I+  SL + +
Sbjct: 563 LGKGRL-----LLTIMKSLSALAIVANILYWSLYQWW 594


>gi|295693743|ref|YP_003602353.1| di-/tripeptide transporter [Lactobacillus crispatus ST1]
 gi|295031849|emb|CBL51328.1| Di-/tripeptide transporter [Lactobacillus crispatus ST1]
          Length = 445

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 9/176 (5%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                + L   I L+   +  +    SD+   L S   R+ +    I     +L    + 
Sbjct: 54  LPAGVTALYASIALIVVGTGLLKPNVSDMVGGLYSVEDRRRDAGFSIFVFGINLGSFLAP 113

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV------- 146
            ++P       F I    +      +L  +   F  V    G K+  S  +L        
Sbjct: 114 WLVPWAAQGFGFHIFGNEMNFHAGFSLAAIGMFFGLVQYVWGGKKYLSPESLTPNDPIDR 173

Query: 147 -NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
            + + + +K +++G ++   +             N  ++L      +     +++L
Sbjct: 174 GDLL-NIIKWVVIGFVVIALVLAAMAGFGQLNVDNVITLLTILAIALPIYYFVMML 228


>gi|311032940|ref|ZP_07711030.1| carbon starvation protein CstA [Bacillus sp. m3-13]
          Length = 580

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 33  EASLFSSILACLIYLLFFFSPG--------IYSVTSDLHVLLASATQRKLEDISHIVFLL 84
             +  S IL   I L + + P         +++        L  + + K + I  +   L
Sbjct: 64  SVAGASPILGPAIALYWGWGPAFLWVILGTVFAAGVHDFGTLVLSVRNKGQSIGTLTDRL 123

Query: 85  THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
                    L I  +L+ M+  + +++I  + +     V P F  + +   I        
Sbjct: 124 IGKRAKMLFLFIILILVLMVNAVFAWVISNLFIQFPAAVIPIFIEIPIAIWIGYAVYKRK 183

Query: 145 LVNFMKSFVKIILV--GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
               + S + + ++    ++T  L      ++ +     +++L+          + I++ 
Sbjct: 184 AKMLVPSLIALAVMYGSAVLTSKLPFLQIDLVRYFGGADNTVLFGLDGVSMSFFVWIVIL 243

Query: 203 IA 204
           + 
Sbjct: 244 LV 245


>gi|254478088|ref|ZP_05091471.1| integral membrane protein MviN [Carboxydibrachium pacificum DSM
           12653]
 gi|214035950|gb|EEB76641.1| integral membrane protein MviN [Carboxydibrachium pacificum DSM
           12653]
          Length = 524

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
           S+ L  +    F      Y +   L     S    K   I+  + +L ++ L+   +   
Sbjct: 345 STYLTSIALFYFAIGMTAYGLRDVLSRSFYSMKDTKTPMINGALAVLVNIILNLILVRYL 404

Query: 98  GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
            L    +    + +     + N           SLR+ I RI     L++F+K+    ++
Sbjct: 405 ELGGLALSTSIAAIFATFLLFN-----------SLRKKIGRINGRYMLISFLKASAGSLI 453

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           +  ++             F+   P   +Y A      + I   ++   + ++D    Y+ 
Sbjct: 454 MALVVYFFFN-------RFMLMFPDKKIYEAIALFITIGIGAFVYFLAVILMDKNVFYY- 505

Query: 218 WYSKLK 223
           +   +K
Sbjct: 506 FKKGVK 511


>gi|167949064|ref|ZP_02536138.1| hypothetical protein Epers_22151 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 35

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 15/17 (88%)

Query: 224 MSKQEIKDEIKQSYGNP 240
           M++QE++DE+K++ G P
Sbjct: 1   MTRQEVRDEMKETEGRP 17


>gi|300712179|ref|YP_003737993.1| aldo/keto reductase [Halalkalicoccus jeotgali B3]
 gi|299125862|gb|ADJ16201.1| aldo/keto reductase [Halalkalicoccus jeotgali B3]
          Length = 274

 Score = 40.2 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 301 KKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQL-IYKI 349
           + +R+ A EH++P+     LAR     VP    I      + AQ+ +  +
Sbjct: 172 ETLREYADEHDLPLVAYSPLARGEVFDVPELEEIAEKHDASAAQVSLAWL 221


>gi|328856809|gb|EGG05929.1| hypothetical protein MELLADRAFT_87612 [Melampsora larici-populina
           98AG31]
          Length = 569

 Score = 40.2 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 72/202 (35%), Gaps = 10/202 (4%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT---HLSLS 90
             +  SIL+     + FF   I S+   +      +   ++  ++   F+      + ++
Sbjct: 286 LLVLVSILSAARNAMSFFMLLIVSLGYSIVKDSLGSMMIRIRLLAAAHFVFGVVYAIGMA 345

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
                  GL +F M    ++ +    +  +  +    + +   E  K+ Y     V   +
Sbjct: 346 TFPFESAGLWIFFMVFPLAFTLTGFMMWIMAALS---QTIQDLESRKQTYKKQMFVRLHR 402

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
             +   +V  +  +  + ++   L      P +     F     + ++ ++   ++  L 
Sbjct: 403 ILIAAAVVIILFFLVSSISFSNRLQE-DYAPETWRTRWFILDGWLALLYIVCFISVAFLW 461

Query: 211 IGWSYHQWYSKLKMSKQEIKDE 232
              + +++   L MS +  +DE
Sbjct: 462 RPTARNRY---LAMSDELAQDE 480


>gi|312139110|ref|YP_004006446.1| nad(p) transhydrogenase beta subunit pntb [Rhodococcus equi 103S]
 gi|311888449|emb|CBH47761.1| NAD(P) transhydrogenase beta subunit PntB [Rhodococcus equi 103S]
          Length = 476

 Score = 40.2 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 60/186 (32%), Gaps = 17/186 (9%)

Query: 32  REASLFSSILACLIYLLFFFSPGI----YSVTSDLHVLLASATQRKLEDISHIVFL-LTH 86
           R+   +  I+  L+  +    P       +    L  L        +  I+   FL    
Sbjct: 52  RDTDHWGLIIGGLLVGIVLGVPPALRTKMTAMPQLVALFNGVGGGTVALIAWAEFLNSDG 111

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            +   +   +P ++  +   I   +     ++    ++  F +       K++ +     
Sbjct: 112 FTTVKTVPSVPFIVGSLFAAIIGSVSFWGSLVAFAKLQELFNK----NFEKKVVASAKAF 167

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
                 + ++ VG  I I +  +        + +P S L+     V   ++ + + +  +
Sbjct: 168 QLANMILAVVSVGIAIYIGIQAD-------PANDPTSALWIVGLLVAAGVMGLFVVL-PI 219

Query: 207 TVLDIG 212
              D+ 
Sbjct: 220 GGADMP 225


>gi|219121585|ref|XP_002181144.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407130|gb|EEC47067.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 480

 Score = 40.2 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 24/205 (11%)

Query: 11  TEAPSSKKIEDALNEGNAPI-SREASLFSSILACLIYLLFFFSPGI---------YSVTS 60
           TE  + ++ +      N P   ++ +     +A LI +L   S G+              
Sbjct: 44  TEEATPERRQ------NPPKQYQDVAWALLFVAHLIAMLVVISMGLTGSNQNAYGGGYGG 97

Query: 61  DLHVLLA-SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLN 119
            + V++  +     +     +  ++ H  +     +I  +L  +  GI  ++I  I    
Sbjct: 98  TIFVVVGVTGLSSLIFSSLALSQMMKHTEILVQVALIFSVLCSLAIGIVGFMIGSIMTGV 157

Query: 120 LNHVKPSFKRVSLREGIKRI-YSINNLVNFMKSF-----VKIILVGTIITISLTENYFTM 173
           +  +  +F     +    RI ++  NLV  + +      + I   G      +   +F  
Sbjct: 158 IGLIAFAFGCCYAKIVWPRIPFAATNLVTALSAVRANLGLAIAAYGMTALAFVWS-FFWF 216

Query: 174 LDFISANPHSILYHAFFTVRKVLIM 198
                A   S L   F        +
Sbjct: 217 TGLADAFAGSNLGIIFLLFLSFYWV 241


>gi|325673589|ref|ZP_08153280.1| NAD(P) transhydrogenase beta subunit [Rhodococcus equi ATCC 33707]
 gi|325555610|gb|EGD25281.1| NAD(P) transhydrogenase beta subunit [Rhodococcus equi ATCC 33707]
          Length = 476

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 60/186 (32%), Gaps = 17/186 (9%)

Query: 32  REASLFSSILACLIYLLFFFSPGI----YSVTSDLHVLLASATQRKLEDISHIVFL-LTH 86
           R+   +  I+  L+  +    P       +    L  L        +  I+   FL    
Sbjct: 52  RDTDHWGLIIGGLLVGIVLGVPPALRTKMTAMPQLVALFNGVGGGTVALIAWAEFLNSDG 111

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            +   +   +P ++  +   I   +     ++    ++  F +       K++ +     
Sbjct: 112 FTTVETVPSVPFIVGSLFAAIIGSVSFWGSLVAFAKLQELFNK----NFEKKVVASAKAF 167

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
                 + ++ VG  I I +  +        + +P S L+     V   ++ + + +  +
Sbjct: 168 QLANMILAVVSVGIAIYIGIQAD-------PANDPTSALWIVGLLVAAGVMGLFVVL-PI 219

Query: 207 TVLDIG 212
              D+ 
Sbjct: 220 GGADMP 225


>gi|222153868|ref|YP_002563045.1| membrane protein [Streptococcus uberis 0140J]
 gi|222114681|emb|CAR43759.1| putative membrane protein [Streptococcus uberis 0140J]
          Length = 520

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 40/234 (17%)

Query: 25  EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVL------------LASATQR 72
           +G  P S   S    +   +I   +      + V  ++                 +  Q+
Sbjct: 77  KGQIPYSEVFSTGGMLYFAMIAFSYLLKSTWWLVLFEMIAFYVSGIYLYKLINFFTGIQK 136

Query: 73  KLEDISHIVFLLTHL----SLSASRLVIPGLLL-----------------FMMFGIGSYL 111
                S + + L        +   +  +P +L+                 F++FG+   +
Sbjct: 137 VAWAFSFLFYFLMGTLGFGGIYPIQFALPFVLISLWFLTKYFAALIKDEAFILFGLAGAM 196

Query: 112 IQRIPVLNLNHVKPSF--KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTEN 169
                +L    +        V +    K+ +        + S + ++LV       +   
Sbjct: 197 AM---LLEPRALIFWLVSSIVIIVYNSKQHHVARGFYQLLASILGMLLVFYTAGYFILNL 253

Query: 170 YFTMLDFISANPHSILYHAFFTVRKVLIMI--LLFIATLTVLDIGWSYHQWYSK 221
                    A  +   +    T+  +L ++  ++F   L +     +Y + + +
Sbjct: 254 QILGPYLAQAVRYQFTFFKVGTLSVLLSVLVQVIFAFGLGISYGVIAYLKHFKE 307


>gi|297691190|ref|XP_002822977.1| PREDICTED: taste receptor type 2 member 49-like [Pongo abelii]
          Length = 309

 Score = 39.8 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 32/239 (13%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
              F  I+  ++ L+ F      +    L   +A   ++K+     I+  L    +    
Sbjct: 1   MMSFLHIVFSILVLVAFILGNFANGFIALTNFIAWVKRQKISSADQIIAALAVSRVGLLW 60

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF----- 148
           +++      ++    S L   I V N   V   F           I+ +  +VNF     
Sbjct: 61  VILLHWYSTVLNPTSSSLKVTIFVSNAWAVTNHFSI--WLATSLSIFYLRKIVNFSRLIF 118

Query: 149 ------MKSFVKIILVGTIITIS-----------LTENYFTMLDFISANPHSILYHAFFT 191
                  KS V +I++G +  +            +    +           + +Y +  T
Sbjct: 119 HHLKRKAKSVVLVIVLGALFFLVCHLVMENTYINVWTKEYEGNVTWKIKLRNAMYLSNLT 178

Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
           V  +  +I   +  ++VL + +S  +   K+++          +   +P  K   K++ 
Sbjct: 179 VATLANLIPFTLTLISVLLLIYSLCKHLKKMQL--------HGKGSQDPSTKIHIKALQ 229


>gi|149176234|ref|ZP_01854849.1| hypothetical protein PM8797T_23094 [Planctomyces maris DSM 8797]
 gi|148844836|gb|EDL59184.1| hypothetical protein PM8797T_23094 [Planctomyces maris DSM 8797]
          Length = 512

 Score = 39.8 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 7/188 (3%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
            + CL+    F   G++ + +       +A  R+L        L     +     V    
Sbjct: 13  FIQCLLEAAPFILAGLF-IAAIFQRFFGAAETRRLFGEGTRAALFRAWVIGMLLPVCSLG 71

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
           ++ +   +    +    ++      P F  +SL  G+     +  L   + S + + LVG
Sbjct: 72  VIPVARQLKKAGLAGGTIIAFAMSAPLFNPLSLLYGLTLSEPVTILAFALFSLLIVTLVG 131

Query: 160 TII--TISLTENYFTMLDFISANPHSILYHAFFTVRKV----LIMILLFIATLTVLDIGW 213
           TI          Y T    I      +L      V++     LI I++ +A + +L +  
Sbjct: 132 TIWDRLFPEKPEYPTDDQVIPYGMKRMLSVGVSAVKEASGTSLIYIMIGLAGVALLGVAL 191

Query: 214 SYHQWYSK 221
                   
Sbjct: 192 PQSSLQRS 199


>gi|290989086|ref|XP_002677176.1| predicted protein [Naegleria gruberi]
 gi|284090782|gb|EFC44432.1| predicted protein [Naegleria gruberi]
          Length = 2103

 Score = 39.8 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 84/218 (38%), Gaps = 29/218 (13%)

Query: 24   NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83
             +    ISR ++ +  ++A ++  L  +   I   +  +  L   +T     D++     
Sbjct: 1628 RKSQPLISRLSTPYLGMIALMVESLLIY---IIQRSVLVDQLFKDSTNWSSGDLA----- 1679

Query: 84   LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRI----------PVLNLNHVKPSFKRVSLR 133
                +   + +V+  +    +  I +YLIQ +           +  L   + +  + SL 
Sbjct: 1680 ----ANWIANIVMIFVNTLNLTAILAYLIQVLRFQLMKYLYNILHQLRKSQSNISQSSLL 1735

Query: 134  EGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
            + +KR ++   +VN   S +   ++  ++  +L             +  +  Y    +  
Sbjct: 1736 KNLKR-FTSKKVVN---SILLTFVILNLLYWTLWVILRRCDVI---SLTAYTYIISISYI 1788

Query: 194  KVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             ++  + L I+   V+D  +S  + +S  K S +E K 
Sbjct: 1789 IIIFALSLVISGTAVVDFIYSMIKQHSSNKKSIEETKK 1826


>gi|146161256|ref|XP_976982.2| hypothetical protein TTHERM_00031840 [Tetrahymena thermophila]
 gi|146146788|gb|EAR86574.2| hypothetical protein TTHERM_00031840 [Tetrahymena thermophila SB210]
          Length = 1591

 Score = 39.8 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 40   ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
            ++ CLI+L FFF+P I      L+ +L+     ++++I +IV +      ++   +    
Sbjct: 1126 MVTCLIFLYFFFAPSI------LNRILSYMACAQIDEIQYIVGMSNLTCFNSEHKLYLFT 1179

Query: 100  LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS--INN--LVNFMKSFVKI 155
             LF +  + +  I       L   +    ++ ++     IY     +     F+K F+K 
Sbjct: 1180 FLFPVCLLWALFIPIYFFFKLKSNREYLDQIRMKFQFGFIYQEYKRSCYYWEFVKIFLKF 1239

Query: 156  ILVGTIITIS------------LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
             ++ T++               L   Y  ++  I      +L  A       LI     I
Sbjct: 1240 TIISTLMIFYEQQTIKIILVATLVLAYNQLIYIIQPFVSKVLNQAEKYSTITLIFTGFLI 1299

Query: 204  ATL 206
              +
Sbjct: 1300 LPI 1302


>gi|82751748|ref|YP_417489.1| membrane-embedded lytic regulatory protein [Staphylococcus aureus
           RF122]
 gi|82657279|emb|CAI81720.1| membrane-embedded lytic regulatory protein [Staphylococcus aureus
           RF122]
          Length = 351

 Score = 39.8 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 86/211 (40%), Gaps = 14/211 (6%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +G    S    L   +   +I +L   +  +Y + S +  ++ ++ Q    D +H+ 
Sbjct: 109 AFKKGIYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHL- 164

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
                + ++ +   I   ++ ++  I ++L+  IP+ N            ++  +   + 
Sbjct: 165 -----IGIAITTQSIIIFVVLLIKAIITWLL-VIPIFNFMTSFVESTNDKVKTHLANGF- 217

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199
              + N  K+F K  +   ++ + +      +   IS N  S+       + +V  ++ I
Sbjct: 218 -KAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTI 276

Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +LFI    ++ +G   +      K++K ++K
Sbjct: 277 ILFIVIHAIILMGIVQYYLKRGQKITKDKVK 307


>gi|16081193|ref|NP_393486.1| V-type ATP synthase subunit I [Thermoplasma acidophilum DSM 1728]
 gi|12585459|sp|Q9HM61|VATI_THEAC RecName: Full=V-type ATP synthase subunit I; AltName: Full=V-ATPase
           subunit I
 gi|10639155|emb|CAC11157.1| A1AO H+ ATPase, subunit I related protein [Thermoplasma
           acidophilum]
          Length = 637

 Score = 39.8 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 91  ASRLVIPGLLLFMMFGIG---SYLIQRIPVLNLNHVKPSFKRVSLR--EGIKRIYSINNL 145
              LV P     M+   G   + L+  + +++     P+   +       +  I S  +L
Sbjct: 332 IFALVFPVFFGLMVGDWGYGLAILLISLFIIHRVDHPPAKSHIPRVISRFVLMIMSPQSL 391

Query: 146 VNFMKSFVKIILVGTIITISLTENY-FTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
               K+ +   +V  I  +   E + F +L F   + +++L         + + +++F  
Sbjct: 392 KTLAKALIPSSIVAIIAGLLFNEFFGFAILPFTVFHVYAVLPKLMLIAGYIGLGMVVFGF 451

Query: 205 TLTVLDIGWSY 215
            L  ++  W  
Sbjct: 452 ILGFIEDLWMK 462


>gi|315444032|ref|YP_004076911.1| apolipoprotein N-acyltransferase [Mycobacterium sp. Spyr1]
 gi|315262335|gb|ADT99076.1| apolipoprotein N-acyltransferase [Mycobacterium sp. Spyr1]
          Length = 560

 Score = 39.8 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 29/221 (13%)

Query: 1   MSENDAPDNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTS 60
           M E  A  +  E P+      A   G A + R   L ++I+A L   + F   G +    
Sbjct: 1   MGETAADADAPERPT-----RARRFGQAVVDRLPRLTAAIVAGLALCVSFPPFGWWYTAI 55

Query: 61  DLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL--------LLFMMFGIGSYLI 112
               +L     R+   ++          L+    ++P +         L +     S+  
Sbjct: 56  LAFAVLGWVLTRERTTVAGGAGYGLLFGLAFYVPLLPWISGLVGAVPWLALSVVEASFCA 115

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV-GTIITISLTENYF 171
               +  +    P +           ++S      ++KS V        ++  S +E+  
Sbjct: 116 LFGMLAVVVRRLPGW-----PLWFAGLWSAQ---EWLKSTVPFGGFPWGVVGFSQSESPL 167

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
             L ++   P         +   VL+   L    L + D  
Sbjct: 168 LPLAYVGGAP-------LVSFALVLLAFSLGALVLGIADWW 201


>gi|55976673|sp|Q645V6|T2R20_PONPY RecName: Full=Taste receptor type 2 member 20; AltName: Full=Taste
           receptor type 2 member 49; Short=T2R49
 gi|51989237|gb|AAU21163.1| taste receptor T2R49 [Pongo pygmaeus]
          Length = 309

 Score = 39.8 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 32/239 (13%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
              F  I+  ++ L+ F      +    L   +A   ++K+     I+  L    +    
Sbjct: 1   MMSFLHIVFSILVLVAFILGNFANGFIALTNFIAWVKRQKISSADQIIAALAVSRVGLLW 60

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF----- 148
           +++      ++    S L   I V N   V   F           I+ +  +VNF     
Sbjct: 61  VILLHWYSTVLNPTSSSLKVTIFVSNAWAVTNHFSI--WLATSLSIFYLRKIVNFSRLIF 118

Query: 149 ------MKSFVKIILVGTIITIS-----------LTENYFTMLDFISANPHSILYHAFFT 191
                  KS V +I++G +  +            +    +           + +Y +  T
Sbjct: 119 HHLKRKAKSVVLVIVLGALFFLVCHLVMENTYINVWTKEYEGNVTWKIKLRNAMYLSNLT 178

Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
           V  +  +I   +  ++VL + +S  +   K+++          +   +P  K   K++ 
Sbjct: 179 VATLANLIPFTLTLISVLLLIYSLCKHLKKMQL--------HGKGSQDPSTKIHIKALQ 229


>gi|28209877|ref|NP_780821.1| hypothetical protein CTC00106 [Clostridium tetani E88]
 gi|28202312|gb|AAO34758.1| conserved membrane protein [Clostridium tetani E88]
          Length = 351

 Score = 39.8 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 9/186 (4%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                 ++   +   +FF+  + S  + L  ++ +    K+ +I +    L  L   A  
Sbjct: 163 IPYIFMLIFFTLISTYFFTKDLSSAKNKLFSIIPNDKSDKISNIFNESKKL--LVNYALS 220

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            +I  L+ F+   IG  +++    + L+ +   F  +    GI  +Y    LVN      
Sbjct: 221 YLIIILITFVETLIGFLVLRVNYAIILSIIAAIFDIL-PILGIGSVYIPLALVNLFIKKD 279

Query: 154 KIILVGTIITISLTENYFTML------DFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
               +G +I   +      +L        +  +P SIL   F  ++   I  + F   L 
Sbjct: 280 YFTAIGVLIWYLVVTIIRQILEPKIVSSSLGMHPISILAAIFIGLKAAGITGMFFCIFLV 339

Query: 208 VLDIGW 213
           V    +
Sbjct: 340 VFYKVF 345


>gi|284034239|ref|YP_003384170.1| major facilitator superfamily protein [Kribbella flavida DSM 17836]
 gi|283813532|gb|ADB35371.1| major facilitator superfamily MFS_1 [Kribbella flavida DSM 17836]
          Length = 410

 Score = 39.8 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 15/200 (7%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED------------ISHIVF 82
                +++ +  L  +   G   +   L  + A+A+                  +     
Sbjct: 90  GSLLMLVSMVFALQAWLDWGQLWLLYVLTAIGAAASAIDTPARRTFIPRVLPPKLLPAAA 149

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR--EGIKRIY 140
            L  LS  A+ +  P L   ++  +G      +  L    V  S +R+     EG    +
Sbjct: 150 ALHQLSFQAAIIAAPVLAGVLISAVGLEAAYGLDALTFVAVLVSVRRLPPMPPEGGGATF 209

Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTML-DFISANPHSILYHAFFTVRKVLIMI 199
            + ++V  ++  V+  L+G I  I L      M      A   +       TV  +   I
Sbjct: 210 GVRSVVEGLRYAVRHPLIGMIFLIDLNATVLAMPTALFPALADTRFGGGAQTVGYLYAAI 269

Query: 200 LLFIATLTVLDIGWSYHQWY 219
            +      +L     + +  
Sbjct: 270 GVGGIVAGILSGPLGHLRHQ 289


>gi|312383457|gb|EFR28541.1| hypothetical protein AND_03421 [Anopheles darlingi]
          Length = 2400

 Score = 39.4 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 148  FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA--- 204
             +K+ + + L+G +  + +  ++  + D       S +     +V ++LI +   +    
Sbjct: 924  LIKTLL-VTLMGLVYCLFIELSHANIFDCYDQRVESAIPLHTISVARILIFMFAILVHGR 982

Query: 205  ---TLTVLDIGWSYHQWYSKLKMS 225
                   LD  W       K +MS
Sbjct: 983  QVEWTARLDFLWQLQASQEKKEMS 1006


>gi|9635620|ref|NP_061524.1| Orf28 [Pseudomonas phage D3]
 gi|8895130|gb|AAF80788.1| putative O-antigen acetylase [Pseudomonas phage D3]
          Length = 687

 Score = 39.4 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 14/195 (7%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+FS +    + L    +        +    L      +      I F     ++  ++
Sbjct: 182 ISVFSVLCVFAVSLYGCIALSGDGAGKNYSFFLMPLRAWEFIAGGAIAF-----AVPFAQ 236

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY-----SINNLVNF 148
            +    L  +       L   I   N     P+ K +    G   I      +   LV+ 
Sbjct: 237 RLGRLALEIIAIAGVVMLFYAIFFFNGKSPYPAGKALVPVIGAALIILCGVSNHKILVSR 296

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           + SF   +++G +       ++      ++        H    +   ++ I   +A +T 
Sbjct: 297 ILSFRVFVMIGLVSYAWYLWHWP----LLTFGRIYSFGHKSIALDLSMVAIAFVLACITY 352

Query: 209 LDIGWSYHQWYSKLK 223
           + +      W   LK
Sbjct: 353 VYVDKKVLNWRKSLK 367


>gi|323180301|gb|EFZ65853.1| surface presentation of antigens protein spaS domain protein
           [Escherichia coli 1180]
          Length = 93

 Score = 39.4 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 299 IAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAI 334
           +A  +RK A E  IPI  +  LAR  +        +
Sbjct: 1   MALGVRKYAKEIGIPIITDKKLARKNYATHRRYDYV 36


>gi|193664492|ref|XP_001942608.1| PREDICTED: proton-coupled folate transporter-like [Acyrthosiphon
           pisum]
          Length = 563

 Score = 39.4 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 26/226 (11%)

Query: 24  NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83
            EG    +R   + + ++  ++ +                          +     ++  
Sbjct: 296 KEGQ--YNRRLRIIALMVVVIVVMGPLHGEMSVMYLFTRVRFNWDEVNYSMFSTYSMITN 353

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYL--IQRIPVLNLNHVKPSF--KRVSLREGIKRI 139
           L     S         +   + G+ S +  I    V         F    +         
Sbjct: 354 LVGTMFSVGVFSHMLQIDDALIGVISCMSKILAGFVYAFATTDFVFYLAPLVDIVNGTSF 413

Query: 140 YSINNLV-------NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA-FFT 191
            ++ +++          K    +  +  +           ++  I    +S +Y A   T
Sbjct: 414 IAMRSIISKLVPPDELGK----VNSLFGVC--------EALVPLIYGPMYSAVYKATLKT 461

Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSY 237
           V     ++   +     L   W Y++   + +  + EI+DE K+S 
Sbjct: 462 VPGAFFLLGGALTAPAALIFLWMYNEHKKERREKEAEIRDEEKKSE 507


>gi|291239388|ref|XP_002739605.1| PREDICTED: Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase subunit STT3A, putative-like
           [Saccoglossus kowalevskii]
          Length = 581

 Score = 39.4 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 11/196 (5%)

Query: 45  IYLLFFFSPGI----YSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100
           ++L  FFS       Y +T +L  L      +    I ++   L+          +  + 
Sbjct: 127 VFLAPFFSSLTTLVTYHLTKELKALGVFGLCQIHAFIDYVRSRLSKEYFEILFRTLVLVA 186

Query: 101 LFMMFGIGSYLIQRIPVLNLNH-----VKPSFKRVS-LREGIKRIYSINNLVNFMKSFVK 154
             ++  +G+ L     +          + PS+ + +         +      +F      
Sbjct: 187 ALIVTAVGAVLTATGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSFYFDLQM 246

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
           ++ +  +              FI     + LY +   VR +++++   +  L  + +   
Sbjct: 247 LVFMFPVGMYYCFSKLTDANIFIIMYGITSLYFSGVMVR-LMLVLAPVMCILAGIGVSSV 305

Query: 215 YHQWYSKLKMSKQEIK 230
              +   L MS++E K
Sbjct: 306 LSNYMKNLDMSRREKK 321


>gi|327288432|ref|XP_003228930.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 7-like [Anolis carolinensis]
          Length = 1967

 Score = 39.4 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 22/99 (22%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K+I   RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 343 EVKLRRELEKTINLQRIHARIGQGVPVVALIFEGGPNVVLTVLEYLQESPPVPVVVCEGT 402

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
              A  +                    ++KQ      IP
Sbjct: 403 G-RAADILAY-----------------VYKQTEEGGNIP 423


>gi|300853242|ref|YP_003778226.1| hypothetical protein CLJU_c00140 [Clostridium ljungdahlii DSM
           13528]
 gi|300433357|gb|ADK13124.1| conserved membrane protein [Clostridium ljungdahlii DSM 13528]
          Length = 905

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 1/179 (0%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE-DISHIVFLLTHLSLS 90
           R+   F  ++   +    F S   Y +    + +  +     L  DIS  +F L  +   
Sbjct: 94  RKIVFFIDLIVSFLASYVFASAYWYRILQFTNSVPFNKKDPILNLDISFYIFKLPLIQSI 153

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
            S LV   +LL ++     +++         + K +F ++++ +     ++   L     
Sbjct: 154 YSALVSLFILLGLITLFTYFILSMKDKFVSRNFKRNFGKINILDSGLTRFAGKQLAVLAA 213

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
             +  I +G I+           + F ++   + +   F+ +  V   I   +  ++++
Sbjct: 214 LIILCISIGYILKCINLVYSQNGVAFGASYTDAHVSLLFYKIIAVASFIAAIVIFISII 272


>gi|208779217|ref|ZP_03246563.1| proton-dependent oligopeptide transport [Francisella novicida FTG]
 gi|208745017|gb|EDZ91315.1| proton-dependent oligopeptide transport [Francisella novicida FTG]
          Length = 513

 Score = 39.4 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 29/206 (14%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E ++    LA +      F     S+ S L            +    + ++  ++   
Sbjct: 111 STEKTVVMYSLAGVAIGGGLFKANPTSLISKLF----EKGDPAQDGAMTLYYMAINIGSF 166

Query: 91  ASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
            S L+ P +     ++   + S +   + +++     P  +R+S   G +++        
Sbjct: 167 LSMLLTPIVAAKYGYLHAFLCSAIGMFLGLISYTVFYPKIQRISTEAGKQKM-------- 218

Query: 148 FMKSFVK--IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI-------- 197
              S+ K  ++L+G  I I +  N        ++    I   A       ++        
Sbjct: 219 ---SWFKVFVVLLGACIAIFIIGNILENTTLCTSIVVVIAILALVYFFIQMLKQAEHERK 275

Query: 198 -MILLFIATLTVLDIGWSYHQWYSKL 222
            MI+  I  +  +     Y Q  + L
Sbjct: 276 RMIVALILIIQGIIFFVLYQQMPTSL 301


>gi|123503305|ref|XP_001328480.1| Clan CA, family C2, calpain-like cysteine peptidase [Trichomonas
           vaginalis G3]
 gi|121911424|gb|EAY16257.1| Clan CA, family C2, calpain-like cysteine peptidase [Trichomonas
           vaginalis G3]
          Length = 1437

 Score = 39.0 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 64/190 (33%), Gaps = 13/190 (6%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           +  S++   I+     +  +      +   + +     L  +  ++ L   L L      
Sbjct: 412 VIVSVIILTIFTSLVLAMWLTDYQYGMPTFIFNIFPIFLFFLIAVIMLSFMLGLHMDAY- 470

Query: 96  IPGLLLFMMFGIGSYLIQRIP--VLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
              L +++       +IQ +      L +++  F   S   G   +Y++   V  + + +
Sbjct: 471 --DLRVYVSVAWSFLMIQILLKRTFKLQYIEYIFTDFSAAFGPYWVYTLYTGVVLLLTIL 528

Query: 154 KIILVGT--------IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
             + +          I    +    F++ +  +   ++  +  F T+   L +  + +  
Sbjct: 529 YFVFIFCFGNTKFISIAVYLIFIFLFSIYNLATQEDNNYYFKTFITLIVFLFVSCIALVV 588

Query: 206 LTVLDIGWSY 215
           +  +   W Y
Sbjct: 589 IAFVYFNWKY 598


>gi|261380497|ref|ZP_05985070.1| rod shape-determining protein RodA [Neisseria subflava NJ9703]
 gi|284796750|gb|EFC52097.1| rod shape-determining protein RodA [Neisseria subflava NJ9703]
          Length = 383

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 10/189 (5%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           LF ++LA  I  LF     +YS        L + T   +   + +  +      +A+++ 
Sbjct: 22  LFFAMLAIYIMSLFL----LYSADGQEFGQLENKTIHTVLGFALLWIIAVFKPHTAAKVA 77

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF------M 149
           +P  ++ ++  IG  +       +   +   F R+   E +K    +     F      +
Sbjct: 78  LPVYIVGVLLLIGVEVAGVTVNGSTRWLSLGFTRIQPSEIMKIGIPMTVAWYFQRYEGRL 137

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
           K    I+ +  I+           L   +    S ++  FF       +    IA +  L
Sbjct: 138 KWIHYIVALVLILVPVALILKQPDLGTAALIMASGIFVIFFAGLPWKAIFSAIIAFVAAL 197

Query: 210 DIGWSYHQW 218
            + W+Y   
Sbjct: 198 PLLWNYGMH 206


>gi|261364018|ref|ZP_05976901.1| rod shape-determining protein RodA [Neisseria mucosa ATCC 25996]
 gi|288568046|gb|EFC89606.1| rod shape-determining protein RodA [Neisseria mucosa ATCC 25996]
          Length = 387

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 27/177 (15%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           LF  +LA  I  LF     +YS        L   T   +   + + F+ +     A+++ 
Sbjct: 23  LFFPMLAIYIMSLFL----LYSADGQDFGQLEHKTMHTVTGFALLWFVASFKPRDAAKVA 78

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +P  L+ ++  +   +       +   ++  F R+   E                  +KI
Sbjct: 79  LPMYLIGVLLLVAVEVAGVTVNGSTRWLELGFTRIQPSE-----------------IMKI 121

Query: 156 ILVGTIITIS------LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
           +L  T+          L   ++ +   +   P +++         VLIM        
Sbjct: 122 VLPMTVAWYFQRHEGRLKWFHYIIAMLLILIPVALILKQPDLGTAVLIMASGIFIVF 178


>gi|221133802|ref|ZP_03560107.1| cell division protein FtsW [Glaciecola sp. HTCC2999]
          Length = 428

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 62/202 (30%), Gaps = 15/202 (7%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS--- 90
            +L    +  ++        GI    +    ++       L  I  +  L+  +S+    
Sbjct: 35  VALALVSIGIIMVASASMPEGIAKYNNQYFFIIRHVIFSCLSFIVALFVLMIPISMWQKY 94

Query: 91  ---ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINN-- 144
                 L    L+  ++ G      QR   L   +++     ++     +       +  
Sbjct: 95  NPYLLFLAFGLLVAVLLVGRSVNGAQRWLTLGPINIQAAEPTKLFFFCFLAGYLERRHTE 154

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           +   +K F+K +LV  ++ + L        D  +     I       +    +   + + 
Sbjct: 155 VTENIKGFIKPLLVFFVLGLCLWSQ----PDLGTTIVMFITTIGLLFLAGAKLWQFIGLL 210

Query: 205 TLTVLDIGWSYHQWYSKLKMSK 226
              V  + +    +  + +M +
Sbjct: 211 LTGV--VLFITMIFLEEYRMRR 230


>gi|18976843|ref|NP_578200.1| hypothetical protein PF0471 [Pyrococcus furiosus DSM 3638]
 gi|18892446|gb|AAL80595.1| hypothetical protein PF0471 [Pyrococcus furiosus DSM 3638]
          Length = 397

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 78/211 (36%), Gaps = 20/211 (9%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           +L   +  L +++ G  S    +    +S      E   +       L L+A  ++   +
Sbjct: 87  LLGFAVGSLLYYTGGWASGDVLILAAFSSLLPYAPESAKYKAPYAVVLPLNALTILFNSI 146

Query: 100 LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVG 159
           LL             I    L+ +K  F      +GI+ ++ ++  + F  S    +++ 
Sbjct: 147 LLIFPLIFVYAFAGLIAKKKLSLLKELF-----VKGIRNVFEVSLWIMF--SVTLFVVIS 199

Query: 160 TIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG------- 212
             + ISL      +L F+     S +      +  + ++ + ++   + L          
Sbjct: 200 INLGISLHPLLRWILTFLLIAFLSKIRVIGDILGVLSLVYVTYLVGFSSLYFFLRLVIIL 259

Query: 213 WSYHQWYSKLKMSKQEI------KDEIKQSY 237
           +++    S +KM ++E+       +E+K+  
Sbjct: 260 YAFKLLLSSVKMLRKEVLTKVKRVEELKEGE 290


>gi|269114794|ref|YP_003302557.1| ATP synthase subunit A [Mycoplasma hominis]
 gi|268322419|emb|CAX37154.1| ATP synthase A chain [Mycoplasma hominis ATCC 23114]
          Length = 284

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 10/164 (6%)

Query: 77  ISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           +   + L   LSL     +  GL       + S+L   I        K  FK ++  E  
Sbjct: 93  LFAFLILGNMLSLVGLAPIGTGLSAIFAATVISWLGTHIIGFIYKKFKYLFKILNPLEAS 152

Query: 137 KRIYSINNL-VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195
                + +L      + +  +++  ++++ L   +  ++     +P + L      +   
Sbjct: 153 SNFSPLISLTFRMYGNILGGVVLVALVSLFLNNIWTKIIGANLESPSAELNPIGLLILPA 212

Query: 196 LIMIL----LFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQ 235
             +       FI     + +  SY    ++     ++IK++ K 
Sbjct: 213 FNLYFDIFDSFIQAFVFMILTISYWMQSAE-----EDIKEKHKD 251


>gi|313678811|ref|YP_004056551.1| membrane protein [Mycoplasma bovis PG45]
 gi|312950227|gb|ADR24822.1| putative membrane protein [Mycoplasma bovis PG45]
          Length = 352

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 150 KSFVKI-----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           K+F KI      +   I+ +++  +   ++     N   I   + + + ++++ IL  I 
Sbjct: 108 KNFAKIYTWPLTIYFIILFVNIWNSVSAIIQGRDINASGIKDFSTYILVRMILTILFTII 167

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIA 250
                 +    + +     ++ Q+ ++  KQ   NP ++   ++I 
Sbjct: 168 LAVAYFVFVRKYMFIKAAYITVQKYEEAQKQLEDNPELRELVQNIQ 213


>gi|260555178|ref|ZP_05827399.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
 gi|260411720|gb|EEX05017.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
          Length = 303

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           +  SL   I   L +  F       ++   +  +L   +   L  ++  + L      + 
Sbjct: 2   QSVSLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
           S ++ P LL+ +   +GS+                F +    E +K   S+   +N +K+
Sbjct: 62  STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110

Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
             K  L   +G I+ I LT+      + +    +       +  AF    +  +   + I
Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170

Query: 204 ATLTVL 209
             L   
Sbjct: 171 VPLAAF 176


>gi|295106175|emb|CBL03718.1| sodium/proton antiporter, CPA1 family (TC 2.A.36) [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 657

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 60/204 (29%), Gaps = 16/204 (7%)

Query: 27  NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86
              I+   +   S++       F F  GI    +  ++      + +   + +  F +  
Sbjct: 155 QFAIAAAVTGTFSLVGATANFFFAFLGGILVGVALGYLGNFIVRRVRSWGLENTTFHVLF 214

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
                  + +    L     I       + V++   + PS  R+++            L 
Sbjct: 215 EVFVPFIVYLVANALGTSGIIAVVAAGILNVVSPRTIGPSVSRMNIVS----TSVWRVLA 270

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
             +   V  +L+GT            +   +     ++       +  +L +  L +A  
Sbjct: 271 FALNGIV-FVLLGT-----------QLPRAMQRTWENVTIDNGVLIGYILGITALMLAVR 318

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIK 230
            V              +M+  E++
Sbjct: 319 FVWVFAMERLHRQRTGRMTLDELR 342


>gi|304439090|ref|ZP_07399009.1| AGCS family alanine/glycine:sodium (Na+) symporter [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372449|gb|EFM26036.1| AGCS family alanine/glycine:sodium (Na+) symporter [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 455

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 39/120 (32%)

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIIT 163
           +  I    I    VL +N +       +  +G+K I             + +  +   + 
Sbjct: 303 LVAIVGVFIDTFVVLTINALVIIATGANQIDGLKGIKVTQKAFELGIGHIGVAFIAVALF 362

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
                       +  AN   +         ++L ++ +++ T+  +D+ W     ++ + 
Sbjct: 363 FFAFSTIIGWYFYGEANVRYLFGQKGIGAYRILALVFIYLGTMFEVDLVWELADMFNAMM 422


>gi|310799811|gb|EFQ34704.1| ion transporter [Glomerella graminicola M1.001]
          Length = 690

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 23/176 (13%)

Query: 45  IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL----- 99
           I L  + +  +Y   S+            + ++  ++ +   ++ +  R++         
Sbjct: 318 IVLYIWLAAFLYDELSEWADAGTIFYATDVWNLFDMIMIGIGIAFAVLRVIGIANNDRHI 377

Query: 100 --LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
               F +F + + L     V +L  + P +  +              L    K FVK ++
Sbjct: 378 TNTAFNVFALEA-LFMVPRVFSLLSLSPYWGTLIPC-----------LKEMGKDFVKFMV 425

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           +  +I +     + T    I  + ++  +      +       + I  +  +D  +
Sbjct: 426 LVVVIYLG----FLTTFSLIGQDAYNFSHMTMILTKIFFGSAYVGIEIMDDIDKVF 477


>gi|320106650|ref|YP_004182240.1| protein-disulfide reductase [Terriglobus saanensis SP1PR4]
 gi|319925171|gb|ADV82246.1| Protein-disulfide reductase [Terriglobus saanensis SP1PR4]
          Length = 708

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 58/207 (28%), Gaps = 33/207 (15%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
             F SILA  ++       G++ +   L        Q+  E  +   F     ++ A+  
Sbjct: 394 PGFVSILAIFLFFFSLSLAGMFDLGLSLTSAGGGLAQK--EGYAGSFFTGVLATVVATPC 451

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHV-----------KPSFKRVSLREGIKRIYSIN 143
             P +   + F +         +     +           +P + ++  R G        
Sbjct: 452 TAPLMGAAIGFALTQPTWITFAIFTSLALGLASPYLILSARPEWTKILPRPG-------- 503

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL--- 200
             +  +K    + L GT+I   L+  Y  +        +         V  +   +L   
Sbjct: 504 AWMETLKQLTSVPLFGTVIW--LSWLYAKLFPSALGIDNLAWLLVGLLVVAIAGWVLYRW 561

Query: 201 -------LFIATLTVLDIGWSYHQWYS 220
                  L  A + V      +     
Sbjct: 562 PAGWKSTLVAALIAVFAASVPFLMREK 588


>gi|293376870|ref|ZP_06623088.1| phosphotransferase system, EIIC [Turicibacter sanguinis PC909]
 gi|325840116|ref|ZP_08166943.1| PTS system fructose-specific EIIABC component [Turicibacter sp.
           HGF1]
 gi|292644480|gb|EFF62572.1| phosphotransferase system, EIIC [Turicibacter sanguinis PC909]
 gi|325490408|gb|EGC92730.1| PTS system fructose-specific EIIABC component [Turicibacter sp.
           HGF1]
          Length = 460

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%)

Query: 40  ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
           ++A  + +   F  GI+S        +    +L          I  +       S+S   
Sbjct: 143 VVAGGVLIAISFLWGIHSADPTHETYNQFAAMLKQIGGVAFGFIVPVFTAYIASSISGRP 202

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            +I G +  M+            V            + L +G+ R +        +KS  
Sbjct: 203 GLIAGFVGGMIANDTGAGFIGGIVAGFFAGYLVLGLIHLLKGLPRQF------EGLKSIF 256

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            + ++G ++T  L       +  I+   ++++           I++ + I  +   D 
Sbjct: 257 ILPIIGVLLTGMLMLFLGEPVAAIN---NAVMSWLADLQDSNAILLGIVIGCMCAFDF 311


>gi|29028605|ref|NP_803295.1| tape measure protein [Staphylococcus phage 11]
 gi|18920529|gb|AAL82270.1| tape measure protein [Staphylococcus phage 11]
          Length = 910

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 288 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 347

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 348 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 402

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 403 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 455

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 456 IVIGVIAALIAIFVLLWNKNEGFRN 480


>gi|78356288|ref|YP_387737.1| hypothetical protein Dde_1241 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218693|gb|ABB38042.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 675

 Score = 38.6 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
            ++E +L  SI+    +L   +    YS TS +     + T+     +  + F ++    
Sbjct: 169 QAKEITLALSIMCFGSFLYSIY----YSYTSPVAAYFNTFTRIWELLLGGLAFFISRRFF 224

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSL-REGIKRIYSINNLVNF 148
            A R     +++    G+ S +     + +   V P +  +      +  +    N   F
Sbjct: 225 FA-RTTARLMVILGGLGVASSI----FLFSAKTVFPGWLALIPTVSSVLILLGGANCAGF 279

Query: 149 MKSFV---KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
           + + +     + VG +       ++  ++ +      S  +     +    +++ L  AT
Sbjct: 280 LHALLSNRPALAVGDLSYAIYLWHWPLIIFYRQHISES--FSVIHGLLFCSVVLALSYAT 337

Query: 206 LTVLDIGWSYHQWYS 220
             +++  +    +  
Sbjct: 338 KVLIEDPFRRLSFAR 352


>gi|282889726|ref|ZP_06298265.1| hypothetical protein pah_c004o082 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500300|gb|EFB42580.1| hypothetical protein pah_c004o082 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 417

 Score = 38.6 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 16/124 (12%)

Query: 41  LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100
           +  +++L   FS    S+ +D   LL S        I  I   +  L   A    +   +
Sbjct: 143 VIGVLFLAMLFSFATLSLPNDKRELLHSFFSGLYAAIMKITTWIVWLMPFAIFAFLTLFI 202

Query: 101 -------------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
                        L++   + + L+Q + +L    V    K++S  +  K ++   +L  
Sbjct: 203 RDMREGLEIKSLALYLSCVVIANLVQGLLIL---PVFLKIKKISPFQTAKGMFPALSLAF 259

Query: 148 FMKS 151
           F KS
Sbjct: 260 FSKS 263


>gi|88195719|ref|YP_500528.1| phage tape measure protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|87203277|gb|ABD31087.1| phage tape measure protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|329727749|gb|EGG64203.1| TMP repeat protein [Staphylococcus aureus subsp. aureus 21189]
          Length = 1155

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|222153067|ref|YP_002562244.1| transporter permease [Streptococcus uberis 0140J]
 gi|222113880|emb|CAR42042.1| putative transporter permease protein [Streptococcus uberis 0140J]
          Length = 651

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
            LLAS+    L  I  I+ +        +  ++ GL   ++    + +        L   
Sbjct: 21  FLLASSVLFMLNGIVIIILMSPISEGMQNGKILLGLAAVVLTIFATIMEIYSYNFLLKQR 80

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM---LDFISAN 180
              F   ++    K+   + +++     F+ +I++G+I +   +  ++ +   L   +  
Sbjct: 81  SREFGLYNILGMTKKQIGLVSILELWILFLAVIIIGSIASYIFSHLFYLIFVNLVHYNKL 140

Query: 181 PHSILYHAFFTVRKVLIMILLFIATLTVL 209
              I   AF     V  +I + +  + + 
Sbjct: 141 QLEITPIAFVQTSIVFALIFVLLMFIGLF 169


>gi|215401220|ref|YP_002332525.1| putative tape measure protein [Staphylococcus phage phiSauS-IPLA88]
 gi|215260447|gb|ACJ64578.1| gp50 [Staphylococcus phage phiSauS-IPLA88]
          Length = 1155

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|119494160|ref|XP_001263990.1| FAD binding domain protein [Neosartorya fischeri NRRL 181]
 gi|119412152|gb|EAW22093.1| FAD binding domain protein [Neosartorya fischeri NRRL 181]
          Length = 1100

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 73/247 (29%), Gaps = 33/247 (13%)

Query: 42  ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-- 99
           +  I + +          + L  + +       ED S  + LL  L    S L+I  +  
Sbjct: 488 SGSIVISWLGKTPASGFLNMLVSVFSFPILD--EDPSARLHLLNFLPQLISPLLIYTIEG 545

Query: 100 -------LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
                   L  +  + +  +Q   +  +  +   F  +    G + I           S 
Sbjct: 546 YRLGNQGSLLALPSLFTAGMQVQGIGRMAPLHAIFSAI---FGTESIPGRAVPKEVAMSL 602

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
           V  + +G +           +   +  +P + L      +        L      V    
Sbjct: 603 VPAVTLGFV-----------LPTIMFFSPTANLPAWQNWIALWQFAPPLVNVLTAVFSAV 651

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNP 272
               +       S +E + E K+       K    S+ R+ +    +++T     +    
Sbjct: 652 LRRWRHRHS---SPEEHEAEFKRYE-----KRDVPSLQRAYMYAFAVQSTVHIATMAYAW 703

Query: 273 THYALAL 279
           TH  +++
Sbjct: 704 THPGISI 710


>gi|319894690|gb|ADV76501.1| phage tape measure protein [Staphylococcus phage TEM126]
          Length = 910

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 288 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 347

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 348 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 402

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 403 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 455

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 456 IVIGVIAALIAIFVLLWNKNEGFRN 480


>gi|187779392|ref|ZP_02995865.1| hypothetical protein CLOSPO_02988 [Clostridium sporogenes ATCC
           15579]
 gi|187773017|gb|EDU36819.1| hypothetical protein CLOSPO_02988 [Clostridium sporogenes ATCC
           15579]
          Length = 464

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 144 FVVAGGVLIAISFLWGIYSFDPKSTQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 203

Query: 97  PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           PG++   + G+ +       +          ++   FK++    G+ + +        +K
Sbjct: 204 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 255

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S   + ++G ++T  L       +  ++     I+       +   I++ + I  ++  D
Sbjct: 256 SIFILPIIGILVTGVLMTLLGEPVAALN---KGIMAWLASLEQANPILLGIIIGCMSAFD 312

Query: 211 I 211
            
Sbjct: 313 F 313


>gi|254390605|ref|ZP_05005819.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812202|ref|ZP_06770845.1| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197704306|gb|EDY50118.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324801|gb|EFG06444.1| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 360

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 13/111 (11%)

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
               +  V  I    +    F +   +   P   +    F++   L   L FI    V  
Sbjct: 71  MLSMLATVAFIACFVI----FPIDKLVYIWPFGRVSALNFSLGWTLGAALFFIGAGAV-- 124

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
                  W   L MS +EI D+      +P +K +  +  R       M  
Sbjct: 125 ------HWARTL-MSDEEIADDRHPIEASPEVKAKVMADFRQGAEESGMGR 168


>gi|114570438|ref|YP_757118.1| hypothetical protein Mmar10_1888 [Maricaulis maris MCS10]
 gi|114340900|gb|ABI66180.1| hypothetical protein Mmar10_1888 [Maricaulis maris MCS10]
          Length = 296

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 69/188 (36%), Gaps = 1/188 (0%)

Query: 26  GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
           G    S E + F   L  +  +        +S  +    +      R    +S   + L 
Sbjct: 44  GQMAQSAELTGFWLTLDAVALIALTVGSLAFSAMAFRLAVRGEYDGRFGLRLSADEWRLF 103

Query: 86  HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145
            +++  + LV+   LL  MF I  +       +    +      + L   ++ + + + +
Sbjct: 104 VVAMLNAALVLIVALLAAMFAIVVFGTVAAGAVERAGIDAREAGIDLPMAMQYLTTADWV 163

Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
                + + ++LVG ++   L  ++       S    S+   +     ++L  I+  +A 
Sbjct: 164 AVGAVNVLALLLVGWLVAR-LCLSFPASFAQRSVRVLSVWSLSEGQAWRILASIVAALAP 222

Query: 206 LTVLDIGW 213
           L +++IG 
Sbjct: 223 LVIVEIGL 230


>gi|148267335|ref|YP_001246278.1| Phage-related protein-like protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393387|ref|YP_001316062.1| phage tape measure protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|258418119|ref|ZP_05682384.1| phage tail tape measure protein [Staphylococcus aureus A9763]
 gi|258448887|ref|ZP_05696996.1| phage tape measure protein [Staphylococcus aureus A6224]
 gi|258453874|ref|ZP_05701846.1| phage tape measure protein [Staphylococcus aureus A5937]
 gi|282929099|ref|ZP_06336680.1| tape measure protein [Staphylococcus aureus A10102]
 gi|295406605|ref|ZP_06816411.1| tape measure protein [Staphylococcus aureus A8819]
 gi|147740404|gb|ABQ48702.1| Phage-related protein-like protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945839|gb|ABR51775.1| phage tape measure protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257838912|gb|EEV63391.1| phage tail tape measure protein [Staphylococcus aureus A9763]
 gi|257857783|gb|EEV80675.1| phage tape measure protein [Staphylococcus aureus A6224]
 gi|257863739|gb|EEV86495.1| phage tape measure protein [Staphylococcus aureus A5937]
 gi|282589291|gb|EFB94385.1| tape measure protein [Staphylococcus aureus A10102]
 gi|285816581|gb|ADC37068.1| phage tape measure protein [Staphylococcus phage phiSaST5K]
 gi|294968750|gb|EFG44773.1| tape measure protein [Staphylococcus aureus A8819]
          Length = 1155

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|56961800|ref|YP_173522.1| NahC family Na(+)/H(+) antiporter [Bacillus clausii KSM-K16]
 gi|56908034|dbj|BAD62561.1| NhaC family Na+:H+ antiporter [Bacillus clausii KSM-K16]
          Length = 472

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 61/185 (32%), Gaps = 8/185 (4%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDI---SHIVFLLTHLSLS 90
                 I+   + +  +   GI +      + + S +   +      + +   +     +
Sbjct: 69  LPAVVIIILVGLTIGAWIGGGIVATMVFYGLKIMSPSFFLVSICVICAAVSLSIGSSWST 128

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
            + + + G+ + +  GI + ++    V++  +       +S    +    +  +L   +K
Sbjct: 129 MATIGVAGMGIGLSMGIPAAMV-AGAVISGAYFGDKLSPLSDTTNLAAGLTGTDLFEHIK 187

Query: 151 ----SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
               S +  +L+  I+   L  N         A+    +            ++++ +A +
Sbjct: 188 CMLVSTIPALLISLIVYWFLGRNEVEGNTASFADIERTMASLQENFVLSPWLLIVPLAVI 247

Query: 207 TVLDI 211
             +  
Sbjct: 248 VFVMF 252


>gi|282919657|ref|ZP_06327389.1| tape measure protein [Staphylococcus aureus subsp. aureus C427]
 gi|282316295|gb|EFB46672.1| tape measure protein [Staphylococcus aureus subsp. aureus C427]
          Length = 1155

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|126641621|ref|YP_001084605.1| hypothetical protein A1S_1576 [Acinetobacter baumannii ATCC 17978]
 gi|169796128|ref|YP_001713921.1| hypothetical protein ABAYE2057 [Acinetobacter baumannii AYE]
 gi|213157137|ref|YP_002319183.1| hypothetical protein AB57_1820 [Acinetobacter baumannii AB0057]
 gi|215483582|ref|YP_002325803.1| hypothetical protein ABBFA_001900 [Acinetobacter baumannii
           AB307-0294]
 gi|239502180|ref|ZP_04661490.1| hypothetical protein AbauAB_07695 [Acinetobacter baumannii AB900]
 gi|332851782|ref|ZP_08433707.1| hypothetical protein HMPREF0021_01279 [Acinetobacter baumannii
           6013150]
 gi|126387505|gb|ABO12003.1| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|169149055|emb|CAM86932.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|213056297|gb|ACJ41199.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|213988447|gb|ACJ58746.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|332729789|gb|EGJ61124.1| hypothetical protein HMPREF0021_01279 [Acinetobacter baumannii
           6013150]
          Length = 303

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           +  SL   I   L +  F       ++   +  +L   +   L  ++  + L      + 
Sbjct: 2   QSISLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
           S ++ P LL+ +   +GS+                F +    E +K   S+   +N +K+
Sbjct: 62  STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110

Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
             K  L   +G I+ I LT+      + +    +       +  AF    +  +   + I
Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170

Query: 204 ATLTVL 209
             L   
Sbjct: 171 VPLAAF 176


>gi|326431829|gb|EGD77399.1| hypothetical protein PTSG_08494 [Salpingoeca sp. ATCC 50818]
          Length = 1587

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query: 12   EAPSSKKIEDALNE----GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA 67
            E    +K++D   +    G     ++ S   S L       +  S  I  +  +L+    
Sbjct: 985  EQKEQRKLDDLRKKGRLRGQLLR-QQQSSAKSTLGFFTLTYYSLSLWISRLWRNLYQFFT 1043

Query: 68   S---ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
            +     +R  E       ++    + A  L++   +  + +     + Q I +       
Sbjct: 1044 TFELFGRRLHEVEGQFGTVVYQYFVFARSLILLNFICAIAWAAFVIIPQSILL---QEPD 1100

Query: 125  PSFKRVSLREG 135
              F    L  G
Sbjct: 1101 VDFDPSDLLTG 1111


>gi|66395294|ref|YP_239580.1| ORF001 [Staphylococcus phage 69]
 gi|62635645|gb|AAX90756.1| ORF001 [Staphylococcus phage 69]
          Length = 1155

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|332865838|ref|ZP_08436622.1| hypothetical protein HMPREF0020_00228 [Acinetobacter baumannii
           6013113]
 gi|332735050|gb|EGJ66135.1| hypothetical protein HMPREF0020_00228 [Acinetobacter baumannii
           6013113]
          Length = 303

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           +  SL   I   L +  F       ++   +  +L   +   L  ++  + L      + 
Sbjct: 2   QSISLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
           S ++ P LL+ +   +GS+                F +    E +K   S+   +N +K+
Sbjct: 62  STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110

Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
             K  L   +G I+ I LT+      + +    +       +  AF    +  +   + I
Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170

Query: 204 ATLTVL 209
             L   
Sbjct: 171 VPLAAF 176


>gi|118430776|ref|YP_874001.1| phage tape measure protein [Staphylococcus phage phiNM]
 gi|151221992|ref|YP_001332814.1| phage tape measure protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|104641668|gb|ABF73082.1| phage tape measure protein [Staphylococcus aureus phage phiNM1]
 gi|150374792|dbj|BAF68052.1| phage tape measure protein [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 1155

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|152981779|ref|YP_001353589.1| hypothetical protein mma_1899 [Janthinobacterium sp. Marseille]
 gi|151281856|gb|ABR90266.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 309

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 28/71 (39%)

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
            ++   +  +L       L  + ++  + L     ++ K  I+++     + +    W  
Sbjct: 135 FIIFDALGAALWAGSAIFLGSLFSSAVADLLDILASLGKWGILLVALAFAVYLAKKWWQR 194

Query: 216 HQWYSKLKMSK 226
           H +   L+M++
Sbjct: 195 HSFLKDLRMAR 205


>gi|326440643|ref|ZP_08215377.1| putative ubiquinol-cytochrome c reductase iron-sulphur subunit
           [Streptomyces clavuligerus ATCC 27064]
          Length = 331

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 13/111 (11%)

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
               +  V  I    +    F +   +   P   +    F++   L   L FI    V  
Sbjct: 42  MLSMLATVAFIACFVI----FPIDKLVYIWPFGRVSALNFSLGWTLGAALFFIGAGAV-- 95

Query: 211 IGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
                  W   L MS +EI D+      +P +K +  +  R       M  
Sbjct: 96  ------HWARTL-MSDEEIADDRHPIEASPEVKAKVMADFRQGAEESGMGR 139


>gi|258440739|ref|ZP_05690681.1| phage tape measure protein [Staphylococcus aureus A8115]
 gi|282894704|ref|ZP_06302931.1| tape measure protein [Staphylococcus aureus A8117]
 gi|257852480|gb|EEV76400.1| phage tape measure protein [Staphylococcus aureus A8115]
 gi|282762981|gb|EFC03114.1| tape measure protein [Staphylococcus aureus A8117]
          Length = 1155

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|308176267|ref|YP_003915673.1| disulfide bond formation protein [Arthrobacter arilaitensis Re117]
 gi|307743730|emb|CBT74702.1| putative disulfide bond formation protein [Arthrobacter
           arilaitensis Re117]
          Length = 299

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 20/183 (10%)

Query: 33  EASLFSSILACLIYLL----------FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
           +  L S+ L  ++ LL          FF S         LH L+       +   + +  
Sbjct: 2   DIGLLSAFLGGMLALLSPCSALLLPAFFASTVGSGPRLYLHGLVFYLGLALVLVPAGLGV 61

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
               L L+  R +I  +   M+  +G          +L+   P F ++       R    
Sbjct: 62  GAVGLFLATERELIVLIASLMLIAMGIIYF-AGFGFDLSRWIPGFSKL-----QHRASGG 115

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
             L   +K+   +  VG +           ML   +    ++       V    +++ +F
Sbjct: 116 KGL---LKTLA-LGAVGGVSGFCAGPILGAMLTLAAVQGDAVSGGVLLAVYGAGMVVPMF 171

Query: 203 IAT 205
           +  
Sbjct: 172 VLA 174


>gi|184157943|ref|YP_001846282.1| hypothetical protein ACICU_01623 [Acinetobacter baumannii ACICU]
 gi|183209537|gb|ACC56935.1| predicted membrane protein [Acinetobacter baumannii ACICU]
 gi|322508262|gb|ADX03716.1| Putative membrane protein [Acinetobacter baumannii 1656-2]
 gi|323517888|gb|ADX92269.1| hypothetical protein ABTW07_1840 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 303

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           +  SL   I   L +  F       ++   +  +L   +   L  ++  + L      + 
Sbjct: 2   QSISLIIQIFLVLAFGYFLGPKLSLNIRHFIFKILPYFSYILLTSVALELTLALDQIDNP 61

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
           S ++ P LL+ +   +GS+                F +    E +K   S+   +N +K+
Sbjct: 62  STILPPALLIALTTSLGSF-------FTCLFAYTIFDK----ESVKGKISLQLFMNALKN 110

Query: 152 FVKIIL---VGTIITISLTEN-----YFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
             K  L   +G I+ I LT+      + +    +       +  AF    +  +   + I
Sbjct: 111 IAKAFLALTIGVILGILLTQLHTHIPFNSWYLLLLFIFLIGIELAFTHFNRTWLSWKILI 170

Query: 204 ATLTVL 209
             L   
Sbjct: 171 VPLAAF 176


>gi|269838968|ref|YP_003323660.1| ribonuclease BN [Thermobaculum terrenum ATCC BAA-798]
 gi|269790698|gb|ACZ42838.1| ribonuclease BN [Thermobaculum terrenum ATCC BAA-798]
          Length = 363

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 27/176 (15%)

Query: 27  NAPISREASLF-SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED--ISHIVFL 83
               S+    F  S L  ++  L+  S    SV   ++V+      R      +  I+  
Sbjct: 105 QIAQSKATGAFGLSALVSILLALWGVSGAFRSVMEAMNVMYEVKEGRPFWKRYLISILLS 164

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
           L    L  + LV+      +   I        PV     +   +                
Sbjct: 165 LGAAVLIIAALVLVVFGADIATAIARASAGLGPVFRWTWIILQW----PV---------- 210

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
                    V  +L+   +      +      FI+  P S++  A + V  +L  +
Sbjct: 211 --------LVGFVLLAFALIYYFAPDVEQQFRFIT--PGSLVAVALWLVFSLLFSL 256


>gi|256825137|ref|YP_003149097.1| choline/carnitine/betaine transport [Kytococcus sedentarius DSM
           20547]
 gi|256688530|gb|ACV06332.1| choline/carnitine/betaine transport [Kytococcus sedentarius DSM
           20547]
          Length = 603

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 64/205 (31%), Gaps = 35/205 (17%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           E      ++  L+   +F + G  ++  ++        +    D +  +F +        
Sbjct: 384 EFLAGVLLVPALLSFFWFSTLGGTALFREIFGGGGLIGEGGAVDTNTALFQMLQDLPGGV 443

Query: 93  RLVIPGLLLFMMFGIGSY----LIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
            L    LL+ ++F + S      +  +     +   P++ R                   
Sbjct: 444 FLAGVALLMVVVFFVTSSDSGSFVVDMLASGGSQEPPTWSR------------------- 484

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
                       I    +  +   +L   +A+P + L           + +LL +  +  
Sbjct: 485 ------------IFWAVVEGSIAAILILATADPAAALGALQTMSILTALPVLLLLVAIAW 532

Query: 209 LDIGWSYHQWYSKLKMSKQEIKDEI 233
             +     + + + ++  Q +++E+
Sbjct: 533 ALVRALSAEHHRERRLEHQMMREEM 557


>gi|297246955|ref|ZP_06930723.1| tape measure protein [Staphylococcus aureus A8796]
 gi|297176212|gb|EFH35510.1| tape measure protein [Staphylococcus aureus A8796]
          Length = 731

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 163 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 222

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 223 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 277

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 278 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 330

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 331 IVIGVIAALIAIFVLLWNKNEGFRN 355


>gi|18397813|ref|NP_564374.1| unknown protein [Arabidopsis thaliana]
 gi|13272451|gb|AAK17164.1|AF325096_1 unknown protein [Arabidopsis thaliana]
 gi|4512625|gb|AAD21694.1| ESTs gb|T20423, gb|AA712864, gb|H76323 and gb|Z25560 come from this
           gene [Arabidopsis thaliana]
 gi|19698823|gb|AAL91147.1| unknown protein [Arabidopsis thaliana]
 gi|21386969|gb|AAM47888.1| unknown protein [Arabidopsis thaliana]
 gi|21553567|gb|AAM62660.1| unknown [Arabidopsis thaliana]
 gi|332193194|gb|AEE31315.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 321

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 46/133 (34%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
           A++  ++ +        FS  + ++      L  +     L   ++       L +    
Sbjct: 98  AAVVFTVASLYTGKPVSFSSTLSAIPKVFKRLFITFLWVALLMFAYNAVFFVFLVMLLVA 157

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           L +  L L ++ G+   ++     +    +      +S+ E +  I ++      +K   
Sbjct: 158 LDLNSLGLAIVAGVIISVLYFGVHVYFTALWHLGSVISVLEPVYGIAAMRKAYELLKGKT 217

Query: 154 KIILVGTIITISL 166
           K+ +    + + L
Sbjct: 218 KMAMGLIFVYLFL 230


>gi|299137852|ref|ZP_07031033.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX8]
 gi|298600493|gb|EFI56650.1| Protein-disulfide reductase [Acidobacterium sp. MP5ACTX8]
          Length = 749

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 59/199 (29%), Gaps = 30/199 (15%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
            +F ++LA   + L     G + +   L +  A     K + ++   F     ++ A+  
Sbjct: 436 PVFVAVLASFFFFLALSLAGQFELG--LSLTSAGGGLAKKQGLTGSFFTGVLATVVATPC 493

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHV-----------KPSFKRVSLREGIKRIYSIN 143
             P +   + F +         V     +           +P + ++  R G        
Sbjct: 494 TGPLMGAAIGFALAQPAWLTFLVFTALALGLALPYLALTMQPQWTKILPRPG-------- 545

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIM----- 198
             +   K    +IL  T I ++    +    D I      +       +   ++      
Sbjct: 546 AWMEVFKQLTSVILFITAIWLTWVFGHLYANDGIDRIVALLACFLVLAIAGWVLGRWPAK 605

Query: 199 ----ILLFIATLTVLDIGW 213
               I+  +  L  L I  
Sbjct: 606 WGSTIVAVLLILGGLIIPL 624


>gi|296188574|ref|ZP_06856962.1| putative hydrogenase 4 subunit F [Clostridium carboxidivorans P7]
 gi|296046838|gb|EFG86284.1| putative hydrogenase 4 subunit F [Clostridium carboxidivorans P7]
          Length = 486

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
             S+  + +   ++ LF  S    ++++++ ++  S     L     I F    LSL A+
Sbjct: 97  SISINFAKIYYFLFNLFVLSMIAVAISNNIILMWISLEATTLSTAFLIGFNRHKLSLEAA 156

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
              I    + ++ G+   ++        +   PS K ++    +K    +N      KS 
Sbjct: 157 WKYIIICSIGIVLGLIGIIL-----FIYSSGDPSNKVLNWTYLVKNYSLLN------KSI 205

Query: 153 VKI----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           VK     I VG      L   +  + D  S  P  I       +  + + ++L    +  
Sbjct: 206 VKFGFCFIFVGIATKAGLAPMHTWLPDAHSEAPSPISAMMSGVLLNLALYVVLRFYIIVK 265

Query: 209 LDIGWSYHQWY 219
           L  G    ++ 
Sbjct: 266 LISGLEKMKYL 276


>gi|158289571|ref|XP_559367.3| AGAP000727-PA [Anopheles gambiae str. PEST]
 gi|157018581|gb|EAL41121.3| AGAP000727-PA [Anopheles gambiae str. PEST]
          Length = 2046

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA--- 204
            +K+ + + L+  +  + +  ++  + D       S +     +V ++LI ++  +A   
Sbjct: 831 LIKTVL-VTLMALVYCLFIELSHANIFDCYDQRVESAIPLHTISVARILIFMIAILAHGR 889

Query: 205 ---TLTVLDIGWSYHQWYSKLKMS 225
                  LD  W       K +MS
Sbjct: 890 QVEWTARLDFLWQLQASQEKKEMS 913


>gi|116617300|ref|YP_817671.1| hypothetical protein LEUM_0148 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096147|gb|ABJ61298.1| Uncharacterized conserved membrane protein [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 387

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 5/162 (3%)

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLI 112
           + S  S + + L    Q++ + I  +    +   L A  +    +L F+  G       +
Sbjct: 91  MLSEISGIFMFLLIYFQQQRQQIDKLRRKTSWRVLPALTVAFAIILAFVTSGFFWAINYL 150

Query: 113 QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF-MKSFVKIILVGTIITISLTENYF 171
            +    +L      F   +       IYS  ++    + S   + ++G ++T  +T +  
Sbjct: 151 FQTASFDLFTSIALFTMFNGIINFLMIYSALSISTLFITSIFVMTIIGGVLTAMVTNSSR 210

Query: 172 TMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
               +  +   +   +A  + +    +IL  +  L ++D  +
Sbjct: 211 MWWQYNLSFLGT--DNALDSWQFNATLILAGLIWLALVDYLF 250


>gi|255065639|ref|ZP_05317494.1| rod shape-determining protein RodA [Neisseria sicca ATCC 29256]
 gi|255049957|gb|EET45421.1| rod shape-determining protein RodA [Neisseria sicca ATCC 29256]
          Length = 387

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 27/177 (15%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           LF  +LA  I  LF     +YS        L   T   +   + + F+ +     A+++ 
Sbjct: 23  LFFPMLAIYIMSLFL----LYSADGQDFGQLEHKTLHTVVGFALLWFVASFKPRDAAKVA 78

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +P  L+ ++  +   +       +   ++  F R+   E                  +KI
Sbjct: 79  LPMYLIGVLLLVAVEVAGVTVNGSTRWLELGFTRIQPSE-----------------IMKI 121

Query: 156 ILVGTIITIS------LTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
           +L  T+          L   ++ +   +   P +++         VLIM        
Sbjct: 122 VLPMTVAWYFQRHEGRLKWFHYIIAMLLILIPVALILKQPDLGTAVLIMASGIFIVF 178


>gi|227832736|ref|YP_002834443.1| transcription-repair coupling factor [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262182774|ref|ZP_06042195.1| transcription-repair coupling factor [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453752|gb|ACP32505.1| transcription-repair coupling factor [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 1212

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 296 QNLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPVFYKAVAQLIYKI 349
            N +A + R++A +         +LA  L     +   IP    +AV  ++  +
Sbjct: 228 TNEVAARARELARKFG----GNAALAELL---TKVGEHIPAEGMEAVLAVLADV 274


>gi|167760727|ref|ZP_02432854.1| hypothetical protein CLOSCI_03112 [Clostridium scindens ATCC 35704]
 gi|167661614|gb|EDS05744.1| hypothetical protein CLOSCI_03112 [Clostridium scindens ATCC 35704]
          Length = 491

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 11/107 (10%)

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           +GT+    L   +  +++ I A           T     +++L FI  L  +        
Sbjct: 9   IGTVYWWILDHLF--LINIIFALLIIFFQRRNPTTVWAWLLLLYFIPVLGFVLYLVLGQN 66

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
           +    +M K      +K+  G   IK   +    S  R K+      
Sbjct: 67  FRKD-RMFK------MKEIEG--EIKYAVRRQEESIYRKKLRLRDPE 104


>gi|311249016|ref|XP_003123426.1| PREDICTED: EGF-like module-containing mucin-like hormone
           receptor-like 2-like, partial [Sus scrofa]
          Length = 828

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 80/218 (36%), Gaps = 22/218 (10%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           E  +  SI+A  ++ L+  S   + +   LH+ L +A    + + S +   +  L     
Sbjct: 601 EIKVLCSIIAGALHYLYLAS-FTWMLLEGLHLFL-TARNLMVVNYSSVNRFMKKLMFPVG 658

Query: 93  RLVIPGLLLFMMFGIGSYLIQR----------IPVLNLNHVKPSFKRVSLREGI------ 136
             V P +++ +      +L               +        +   ++L   +      
Sbjct: 659 YGV-PAVIVTISAATRPHLYGTSSRCWLHTEEGFIWTFLGPVCTIFSINLVFFLITFWIL 717

Query: 137 -KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195
             ++ S+NN V+ +++  +++       + +    + +          ++ + F  +  +
Sbjct: 718 KNKLSSLNNDVSTLRNI-RVLTFKATAQLFILGCTWCLGILQVGPAAHVMAYLFTIINSL 776

Query: 196 LIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEI 233
             + +  +  L    +   Y +WY ++K +K E  +E 
Sbjct: 777 QGVFIFLVYCLLSQQVRDQYRKWYKRVKETKTE-SEEY 813


>gi|16330156|ref|NP_440884.1| hypothetical protein sll1350 [Synechocystis sp. PCC 6803]
 gi|1652644|dbj|BAA17564.1| sll1350 [Synechocystis sp. PCC 6803]
          Length = 398

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 64/176 (36%), Gaps = 29/176 (16%)

Query: 75  EDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPSFKRVSLR 133
           E I+    L   +   +    +P LL+  + GIG   + Q   +   + V          
Sbjct: 16  ETIAPRRSLPQWVFQESVEPAMPWLLVVTVVGIGLGLIFQSSWLGFTSAV---------- 65

Query: 134 EGIKRIYSINNLVNFMKSFV--KIIL---------VGTIITISLTENYFTMLDFISANPH 182
             +  ++S+  ++  +KS+V   + +         +G ++ I    +Y  +   +    +
Sbjct: 66  --LALMFSLQVILPTIKSWVQHYLTVQERRSLLGGLGFVLAIGALAHYLGVYSSLKYWLN 123

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL-----KMSKQEIKDEI 233
              Y  F +  + +  +   +  +  + + W  +     L     ++++Q+  D  
Sbjct: 124 QFKYDEFGSWAEWVGALGQIMIAVLAVYVAWQQYVISKDLTIQQNRITQQQTVDAY 179


>gi|304443252|ref|YP_003857082.1| phage tape measure protein [Staphylococcus phage SAP-26]
 gi|302749860|gb|ADL66945.1| phage tape measure protein [Staphylococcus phage SAP-26]
          Length = 1155

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 64/205 (31%), Gaps = 22/205 (10%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYVQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LL------THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI 136
           L         L      LV     L  +    S  +    +  +  +   F  +      
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR----- 647

Query: 137 KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
             +  +      +K  +KII V       + +  F  +  I      ++         + 
Sbjct: 648 AGLTILKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPIT 700

Query: 197 IMILLFIATLTVLDIGWSYHQWYSK 221
           I+I +  A + +  + W+ ++ +  
Sbjct: 701 IVIGVIAALIAIFVLLWNKNEGFRN 725


>gi|122891770|ref|YP_001004316.1| tail protein [Staphylococcus phage phiETA2]
 gi|121309249|dbj|BAF43871.1| tail protein [Staphylococcus phage phiETA2]
          Length = 1155

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 60/187 (32%), Gaps = 13/187 (6%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
            L   ++  ++  L  F+  +  + S +  +  + T   + ++         L      L
Sbjct: 552 PLIMQLIGNIVRGLVAFATAMAPIASAVLRVAVAITGW-IANLFEAHPATAQLVGVIITL 610

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
           V     L  +    S  +    +  +  +   F  +        +  +      +K  +K
Sbjct: 611 VGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLR-----AGLTILKGAFMLLKGPLK 665

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
           II V       + +  F  +  I      ++         + I+I +  A + +  + W+
Sbjct: 666 IISV-------IFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVIAALIAIFVLLWN 718

Query: 215 YHQWYSK 221
            ++ +  
Sbjct: 719 KNEGFRN 725


>gi|194206663|ref|XP_001918225.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 7 [Equus caballus]
          Length = 1909

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 22/99 (22%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 302 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 361

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
              A                   L   ++KQ      +P
Sbjct: 362 GRAA------------------DLLAYIYKQTEEGGNLP 382


>gi|163943361|ref|YP_001642591.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865558|gb|ABY46616.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 801

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+FS +++  I++  F              ++A         ++ + F   ++  S   
Sbjct: 10  LSIFSLLVSAAIFIQVFTIHSRRYFEKFYGGIIA---------VTLMFFSFPYMGFSYDL 60

Query: 94  LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
             +P +L F+ FG       + S +I RI  +      P              + +  L 
Sbjct: 61  RAVPLILSFIYFGRIAGWITLISIIIMRIFYIGGYWEPPVMA----------YFGMGILF 110

Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
              K++ K +       +  S+      ++               F    +LI + L  A
Sbjct: 111 TIFKTYFKSLHPFKSAPLYFSVFVGMKWLVGVFFITTVLYTPGLVFIALGLLIGVFLMEA 170

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              +  +     +   KLK SKQE+KD + +  G
Sbjct: 171 YQRLYYLTQDLSKMNQKLKKSKQELKDTVHELQG 204


>gi|119961620|ref|YP_947519.1| major facilitator transporter [Arthrobacter aurescens TC1]
 gi|119948479|gb|ABM07390.1| putative major facilitator superfamily (MFS) transporter
           [Arthrobacter aurescens TC1]
          Length = 451

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 13/171 (7%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           +A   S ++A  +       PG     S                   ++  L      A+
Sbjct: 248 DAGTVSGLMALFVATAIVAGPGFGRFVSR---------HPMRRSAMVLLIALATTMAWAA 298

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSLREGIKRIYSINNLVNFMKS 151
            LV+P      +  I   ++      ++  +   F R  +    I     I N+  F+ +
Sbjct: 299 VLVLPERAPLWLLAILVVVLAVGGPGSM--IGFDFARTFNPSHRIGTATGIVNVGGFIAA 356

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
            V I L+G ++   L  + F+  D     P  I     F +  +  +++L 
Sbjct: 357 LVAIYLIGVVL-DVLYASGFSDGDLYGLAPFRIALSVQFILLALGTVLILA 406


>gi|325972233|ref|YP_004248424.1| ABC transporter transmembrane protein [Spirochaeta sp. Buddy]
 gi|324027471|gb|ADY14230.1| ABC-type transporter, integral membrane subunit [Spirochaeta sp.
           Buddy]
          Length = 335

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 41/217 (18%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
             RE+  FS ++  +   LF +             LL  +      +++ +++ +  +  
Sbjct: 9   RMRESEFFSLLITIVAIFLFMY-------------LLNGSKFLSFRNLTTMMYQMPTIGF 55

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF-KRVSLREGIKRIYSINNLVNF 148
            A  ++I  L   +   I +       V+++     +    V+   G          +  
Sbjct: 56  MAIGMLIAELTGGINLSIVAAANFNGIVIHVVLKSLTMGDTVNASNG-------QVYIAL 108

Query: 149 MKSFVKIILVGTIITISLTEN--------------------YFTMLDFISANPHSILYHA 188
           +   +  IL+G I  + +++                       TM   IS  P  I +  
Sbjct: 109 LIGLLACILIGFINGLLISKLKIPALLVTLGMSTLLQGLSILITMGYTISGFPEQITWFG 168

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMS 225
              V  + + I+LFI  + VL        +  +L M+
Sbjct: 169 VGEVIGIPVSIILFIVVVFVLHFILDRTVYGKQLYMT 205


>gi|190337434|gb|AAI63719.1| Trpm7 protein [Danio rerio]
          Length = 1789

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K I   RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 256 EVRLRRELEKHIQLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 315

Query: 297 NLIA 300
              A
Sbjct: 316 GRAA 319


>gi|300694685|ref|YP_003750658.1| transcription regulator [Ralstonia solanacearum PSI07]
 gi|299076722|emb|CBJ36062.2| putative transcription regulator [Ralstonia solanacearum PSI07]
          Length = 346

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 285 ENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFE--------EPSLARSLFKQ-VPINSAIP 335
               P  +  G + +A  + ++A  H I + E        +  L+R L+     +   I 
Sbjct: 242 REPRPTAIFAGNDDMAAGVLRVAQAHGIRVPEELSIAGYDDTPLSRQLWPSLTTVRQPIQ 301

Query: 336 PVFYKAVAQLIY 347
            + Y AV QLI 
Sbjct: 302 DMAYAAVEQLIA 313


>gi|126278251|ref|XP_001380566.1| PREDICTED: similar to transient receptor potential cation channel,
           subfamily M, member 7 [Monodelphis domestica]
          Length = 2120

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 506 EVRLRRELEKAINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 565

Query: 297 NLIA 300
              A
Sbjct: 566 GRAA 569


>gi|170744661|ref|YP_001773316.1| cytochrome c biogenesis protein transmembrane region
           [Methylobacterium sp. 4-46]
 gi|168198935|gb|ACA20882.1| cytochrome c biogenesis protein transmembrane region
           [Methylobacterium sp. 4-46]
          Length = 734

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 10/165 (6%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS-LSASRLVIPG 98
           ++A L YLLF     +         ++               F    L+ + A+    P 
Sbjct: 402 VVAGLAYLLFAMGLSLSGALPIGGGIVGLGDGLTRRAGLEGSFFTGVLATIVATPCTAPF 461

Query: 99  LLLFMMFGIGSYLIQRIPVLN---LNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +   + F +       + +     L    P         G++R+      +  +K F+  
Sbjct: 462 MAAAVGFALTQGAALGLAIFAALGLGLALPFLLLTLWPAGLRRLPRPGAWMETLKGFLAF 521

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
            L  T+  +        +L          L    F +      +L
Sbjct: 522 PLYATVAWLVW------VLSQQVGPAGLFLALIGFVLIGFCAFVL 560


>gi|210062492|ref|YP_002300509.1| putative integral membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213027042|ref|ZP_03341489.1| hypothetical protein Salmonelentericaenterica_33279 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|134270034|emb|CAL91907.1| putative integral membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 141

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 22/160 (13%)

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
                 +  P L + +   +G   +  +  +  N     +KR+      K I+ +     
Sbjct: 3   LFDLFNITHPVLTVPITIIMGLIFLTVLFNVFKNQFLTKYKRLDESGFWKNIFHLLKW-- 60

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
            +K   KI  +  +   S+T  +  M+         +          +   IL    ++ 
Sbjct: 61  -LKG--KINYLVGVYFFSMTLLFSIMVFIFRDETFGL---------DLTAYILCGFISIG 108

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           +  + ++Y      LK + ++++ E K+       K R+K
Sbjct: 109 LSILFYTYRDINFDLK-TYKQVRQEQKE-------KRRRK 140


>gi|290979700|ref|XP_002672571.1| predicted protein [Naegleria gruberi]
 gi|284086149|gb|EFC39827.1| predicted protein [Naegleria gruberi]
          Length = 329

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 78/220 (35%), Gaps = 45/220 (20%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYS-----------VTSDLHVLLASATQRKLEDISHIV 81
           E +L  S+L+  +++  F++    +             + + +L++     K+    H +
Sbjct: 35  ELTLVVSVLSFGVFVGVFYTAWYNAEKITMRDYIGVFITVIGILISVIFSDKIYQPLHPI 94

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
             ++ +S       IP L + ++  +   LI         +V  +   +S          
Sbjct: 95  -TISFISGQILDFNIPILFVILIVILPFILIVLGIFRVFKNVFFN-SSISATFAASNFII 152

Query: 142 INNLVNFMKSFV------------KIILVGTIITISLTEN-----------------YFT 172
               +  +K+ V             +IL+ +++   L  +                 Y+T
Sbjct: 153 FKLFIELVKTSVETDDNQFKHWATYLILILSVVYTILHTHFTQVTLVQYEFTISNVLYYT 212

Query: 173 MLDFISANPHSILYHAFF---TVRKVLIMILLFIATLTVL 209
           ++ FI+     +++  +      + VL+ I  FI  + +L
Sbjct: 213 IMSFITVCGGELIFREWSDTEIFQLVLLFIGWFIQFIGIL 252


>gi|71834284|ref|NP_001025232.1| transient receptor potential cation channel subfamily M member 7
           [Danio rerio]
 gi|62001713|gb|AAX58598.1| transient receptor potential melastatin 7 [Danio rerio]
          Length = 1774

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K I   RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 256 EVRLRRELEKHIQLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 315

Query: 297 NLIA 300
              A
Sbjct: 316 GRAA 319


>gi|256087536|ref|XP_002579923.1| cation efflux protein/ zinc transporter [Schistosoma mansoni]
 gi|238665420|emb|CAZ36162.1| cation efflux protein/ zinc transporter, putative [Schistosoma
            mansoni]
          Length = 2163

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 10/149 (6%)

Query: 62   LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
            L   LAS ++  +  I     L +  +L +  ++IP  LL   F   S   +   +  + 
Sbjct: 1521 LDAGLASISRTLVTSIGGAKRLYSLSALISFIILIPLFLLTHFFNENSLHTKVNWLFWMV 1580

Query: 122  HVKP----SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFI 177
            ++       F   SL  G        ++    K     +++ ++I   L  +  ++  F+
Sbjct: 1581 YISIMHVIDFYMTSLVSG---RLGAQSVTRLAKLT---VVITSLIFSLLWSSSDSVEQFV 1634

Query: 178  SANPHSILYHAFFTVRKVLIMILLFIATL 206
            S + + IL ++F    ++ I +++ +  +
Sbjct: 1635 SFDRNEILVNSFLPKHQMSIGVIVSVVCI 1663


>gi|320162124|ref|YP_004175349.1| hypothetical protein ANT_27230 [Anaerolinea thermophila UNI-1]
 gi|319995978|dbj|BAJ64749.1| hypothetical protein ANT_27230 [Anaerolinea thermophila UNI-1]
          Length = 257

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 26/183 (14%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           L + +      L+F     I ++ + +           L D          + L+ + L 
Sbjct: 79  LLNGLKVFGGGLVFLLPSLILAIKAFVLYFGGMVVFAALADAGREGLAFLLMFLAVTLLF 138

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +  +L F+ + IG  L+Q           P+   ++LRE    ++             K 
Sbjct: 139 VFQMLGFLFYLIGGTLLQ-----------PALAHMALRESFSALFDFKGWWR----VFKA 183

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
              G I+T  L    F  +             A      + I  L F+  LT     +++
Sbjct: 184 SKGGFIVTFLLGVMLFYGIQL-----------ALALTFPIWIFFLFFLPVLTSFAFAYAF 232

Query: 216 HQW 218
             W
Sbjct: 233 TLW 235


>gi|147921370|ref|YP_684816.1| putative oligosaccharyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110620212|emb|CAJ35490.1| putative oligosaccharyltransferase [uncultured methanogenic
           archaeon RC-I]
          Length = 845

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 23/198 (11%)

Query: 31  SREASLFSSILACLIYLLFFFSPGI---YSVTSDLHVLLASATQRKLEDISHIVFL-LTH 86
           S E      I+  ++ LL      +   + +  ++  +  S     L       FL +  
Sbjct: 298 SSEYLSSVGIVTAVVALLLVGPAAVTSYHGMRFEISAIHLSLFHLILMAGLAGFFLCMEG 357

Query: 87  LSLSASRLVIPGLLL----FMMFGIGSYLIQR-------------IPVLNLNHVKPSFKR 129
           L L+ +R   P  +L     ++  IG+ +++                + + + V  S   
Sbjct: 358 LRLAVARAKAPWFVLPAGIVILGAIGALVVKTFLPAVFHNLEAGLTFLRSGSLVLSSISE 417

Query: 130 VSLREGIKRIYSINNLVN-FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
           V+        +S+  L+  F+ S V + +VG    I L        + I     S+    
Sbjct: 418 VAPLLYWTGQFSL-TLIEAFLSSAVLLAIVGMAWFIYLFPARRPSNEEIFFLTWSVAIIV 476

Query: 189 FFTVRKVLIMILLFIATL 206
              ++   I +L     +
Sbjct: 477 LGLLQSRFIYLLGACVAI 494


>gi|322806257|emb|CBZ03825.1| PTS system, galactose-inducible IIB component [Clostridium
           botulinum H04402 065]
          Length = 465

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 64/181 (35%), Gaps = 17/181 (9%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           PG++   + G+ +       +          ++   FK++    G+ + +        +K
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S   + ++G +IT  L       +  ++     I+       +   I++ + I  ++  D
Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGIMAWLASLEQANPILLGIIIGCMSAFD 313

Query: 211 I 211
            
Sbjct: 314 F 314


>gi|312793490|ref|YP_004026413.1| rod shape-determining protein roda [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180630|gb|ADQ40800.1| rod shape-determining protein RodA [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 369

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 65/193 (33%), Gaps = 7/193 (3%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
               I+ CLI  +   S      T    ++++      L    + VF L    + A+  V
Sbjct: 18  TILMIILCLIGFILIASATNVLETGKYKLVISQVIWFCLGLSLYFVFSLIDYRIFANFYV 77

Query: 96  IPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLVNF 148
           I  +++ ++       GI     QR   +     +P    ++ +     ++ ++   +N 
Sbjct: 78  IIYMIMVILLLYVDIKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENINK 137

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
            K+ VK+++   I  + + +        +     + +        +     +  +     
Sbjct: 138 FKTLVKVLIFTAIPIVLVLKQPDLGTASVFIAIIATILFVAGLDLRYFYAAIGALLVFIP 197

Query: 209 LDIGWSYHQWYSK 221
           +   +  H++   
Sbjct: 198 IAWEFVLHEYQKD 210


>gi|73662042|ref|YP_300823.1| hypothetical protein SSP0733 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494557|dbj|BAE17878.1| hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 368

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 70/177 (39%), Gaps = 17/177 (9%)

Query: 48  LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI 107
           +  F+   + +   L VL     Q  +  +   + +   +  +   LV+  L+  ++F  
Sbjct: 19  ILMFTIVSFIILFALTVLTFMPVQPAIYKLLMAMAMQQPIGGAIFSLVLAILIPLIVFIF 78

Query: 108 GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI----------YSINNLVNFMKSFVKIIL 157
             Y +    +  ++       +V+ ++               +S+  LV  + + +  +L
Sbjct: 79  IGYPLIAGTIYTIDKALNK-DKVNFKDLFSTFKKGKYLKGLKFSLFTLVFVIIALLLNLL 137

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL------FIATLTV 208
           V  ++ + + + +  +   +S++ H++ +   + +    I++ +      F+A + +
Sbjct: 138 VSKVLNLGIVQLFSALQGPLSSSDHALGWSLAYQIVAATIVLFIQSFIYWFLAIIAI 194


>gi|229096886|ref|ZP_04227855.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29]
 gi|228686496|gb|EEL40405.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29]
          Length = 801

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 77/214 (35%), Gaps = 28/214 (13%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+FS +++  I++  F              ++A         ++ ++F   ++  S   
Sbjct: 10  LSIFSLLVSAAIFIQVFLIHSRRYFEKFYGGIIA---------VTLMLFSFPYMGFSYDL 60

Query: 94  LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            V+P +L F+ FG       + S +I RI  +      P    +          S++ L 
Sbjct: 61  RVVPLILSFIYFGRIAGWITLISIIIMRIFFIGGYWEPPVIAYL----------SMSVLF 110

Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
              K++ K +       +  S+      ++  +            +    +LI + L  A
Sbjct: 111 FTFKTYFKNLHPFKSASLYFSIFVGIKWLVGVLFNTTLLYTGGLLYIALGLLIGLFLMEA 170

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              +  +     +   +LK SKQE+ D + +  G
Sbjct: 171 YQRLYYLTQDLSKMNRELKKSKQELTDTVHELQG 204


>gi|229115874|ref|ZP_04245272.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3]
 gi|228667617|gb|EEL23061.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3]
          Length = 801

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 77/214 (35%), Gaps = 28/214 (13%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+FS +++  I++  F              ++A         ++ ++F   ++  S   
Sbjct: 10  LSIFSLLVSAAIFIQVFLIHSRRYFEKFYGGIIA---------VTLMLFSFPYMGFSYDL 60

Query: 94  LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            V+P +L F+ FG       + S +I RI  +      P    +          S++ L 
Sbjct: 61  RVVPLILSFIYFGRIAGWITLISIIIMRIFFIGGYWEPPVIAYL----------SMSVLF 110

Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
              K++ K +       +  S+      ++  +            +    +LI + L  A
Sbjct: 111 FTFKTYFKNLHPFKSASLYFSIFVGIKWLVGVLFNTTLLYTGGLLYIALGLLIGLFLMEA 170

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              +  +     +   +LK SKQE+ D + +  G
Sbjct: 171 YQRLYYLTQDLSKMNRELKKSKQELTDTVHELQG 204


>gi|315150948|gb|EFT94964.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0012]
          Length = 683

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A    + +E    +   L +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFAQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|116618915|ref|YP_819286.1| membrane protein, putative toxin regulator [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097762|gb|ABJ62913.1| Predicted membrane protein, putative toxin regulator [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 352

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 14/206 (6%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
            LF +++A  I L+      +  + + +   +A AT+     +   + ++    + +   
Sbjct: 142 PLFVAVIAGGIGLMTLQPISV--LQTWIGDGVAYATELTPLVMGAALGVIFAFLIVSPLS 199

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
            +   +   + G+GS        +    +      V+   G    +  +  +      VK
Sbjct: 200 SVGIAMAISLAGVGSGAANAGITVASFTLALMGASVNPIGGTLAHFVGSPKIQMANMLVK 259

Query: 155 ----------IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMILLF 202
                       ++G + T+   +       F  +     L     + + +  +  ILL 
Sbjct: 260 PKLFIPTSIGAAIMGAVATMLNIKGTPFSAGFGFSGLVGPLTAWSESDKSLVSIFSILLV 319

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQE 228
              L V+        + +KLKM K E
Sbjct: 320 FVILPVIIATVLKWLFMTKLKMIKAE 345


>gi|25027808|ref|NP_737862.1| putative cytochrome D ubiquinol oxidase subunit II [Corynebacterium
           efficiens YS-314]
 gi|259506198|ref|ZP_05749100.1| cytochrome D ubiquinol oxidase, subunit II [Corynebacterium
           efficiens YS-314]
 gi|23493091|dbj|BAC18062.1| putative cytochrome D ubiquinol oxidase subunit II [Corynebacterium
           efficiens YS-314]
 gi|259166175|gb|EEW50729.1| cytochrome D ubiquinol oxidase, subunit II [Corynebacterium
           efficiens YS-314]
          Length = 340

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 12/183 (6%)

Query: 41  LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100
           LA ++          ++    LH L     +   +           +   A+   +P  +
Sbjct: 156 LAAMLNPYALLGAAAFTALFTLHGLAFIRLKTTGDVRDQARKAFWPVFGLAAVTAVPYAV 215

Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160
             ++   G + I  I VL                G+  + +  + + F+ S + ++ V  
Sbjct: 216 WTVLAHDGQWWIAGIAVLCA------------VAGMGFMLANRDGLAFLSSTISVVAVAA 263

Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
           ++ ++L  N         A+       +     ++L    L +  L +   GW+Y  +  
Sbjct: 264 LLFVALFPNVMPTTLVDGASLDIWNASSNPYTLRILTWTALILTPLVLAYQGWTYWVFRK 323

Query: 221 KLK 223
           +++
Sbjct: 324 RIR 326


>gi|328465387|gb|EGF36634.1| Na+/H+ antiporter [Listeria monocytogenes 1816]
          Length = 608

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
             FS + A   +LL             L  ++     R+L   +   F+L  + L     
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 95  VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149
           ++   +    ++  +   ++      +   + P   +++L         I+S+N LV   
Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                 IL+GT +   L   +             IL   F  +    + IL F
Sbjct: 286 -----FILLGTQLLQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 333


>gi|315607250|ref|ZP_07882251.1| NSS family sodium-dependent symporter [Prevotella buccae ATCC
           33574]
 gi|315251067|gb|EFU31055.1| NSS family sodium-dependent symporter [Prevotella buccae ATCC
           33574]
          Length = 457

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 23/138 (16%)

Query: 91  ASRLVIP-GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI---------- 139
           AS+L++P   +L ++  + + L+           KP F +++    +  +          
Sbjct: 171 ASKLLMPTLFILLLVIVVAACLLPGAGKGIAFLFKPDFGKMNSGVFLGALGQSFYSLSIA 230

Query: 140 ----------YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
                     +S     N +KS +++ +V T++ +      F     +  NP S     F
Sbjct: 231 MGCICTYASYFSRQT--NLLKSALQVAVVDTLVAVLAGLMIFPAAFSVGVNPDSGPSLIF 288

Query: 190 FTVRKVLIMILLFIATLT 207
            T+  V  +    +  + 
Sbjct: 289 ITLPNVFNVAFASMPLVG 306


>gi|254511002|ref|ZP_05123069.1| glycerophosphoryl diester phosphodiesterase family protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221534713|gb|EEE37701.1| glycerophosphoryl diester phosphodiesterase family protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 612

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 69  ATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL--FMMFGIGSYLIQRI----PVLNLNH 122
           + Q  L D    +FLL+     A+ +V+   LL    +F + +  ++             
Sbjct: 51  SDQSALTDQDIAMFLLSPAGFIAAIVVLSLFLLAEVFVFSVMAGSLRMGERDPWRAGSAS 110

Query: 123 VKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPH 182
           ++    RV    G    + +  LV    +   + + G I    LTE  + +  +++ +P 
Sbjct: 111 IRLILSRVPALFGFAARFILRVLV---LALPFVAVAGAIAWWMLTE--YDINYYLTFHPP 165

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWY 219
           S           VL +  + I  L+   +      + 
Sbjct: 166 SFWVAVVLIGFVVLCLAWVLIRRLSAWALALHLVLFE 202


>gi|331006455|ref|ZP_08329758.1| putative integral membrane protein [gamma proteobacterium IMCC1989]
 gi|330419755|gb|EGG94118.1| putative integral membrane protein [gamma proteobacterium IMCC1989]
          Length = 141

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 1/134 (0%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           +  +  +  +A +   L  F+   ++V  ++     + T+ + ++   +      +SL +
Sbjct: 8   QNINYIAVAIATIASYLLGFAWYHWAVFGEVWANALNITKEEADNTEGLGGAFI-VSLVS 66

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
                  + L M     S ++       +  +      +    G  R  S   L+N   S
Sbjct: 67  GLTKALCVALLMAATNISGVLNGAFFGAVVAIVFIVTSLGYYNGFARTSSKLTLINSTHS 126

Query: 152 FVKIILVGTIITIS 165
            V+I LVG II   
Sbjct: 127 IVEITLVGAIIGAF 140


>gi|307708835|ref|ZP_07645297.1| membrane protein, putative [Streptococcus mitis NCTC 12261]
 gi|307615201|gb|EFN94412.1| membrane protein, putative [Streptococcus mitis NCTC 12261]
          Length = 293

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 64/188 (34%), Gaps = 17/188 (9%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +    ++   I+LL         +            +     I+ +++ +    L+A  
Sbjct: 91  LTAHVYVIGLFIWLLLVL------IGKFFKPFFILPYRTHFHVITFLIWFVIEFDLAAIG 144

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           L +P L +  +F IG  L+  +    L       K +        +Y    L   +    
Sbjct: 145 LALPFLTILGLFAIGCILL-ALIYWMLRIELKDLKNL--------MYGEVKLPTLLDKIA 195

Query: 154 KIILV--GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           K + +    ++ +++  NY      I+ +    L   F     + I ++  +  +     
Sbjct: 196 KDLAIYGAGLLGLAVIVNYIFKAFSINFSHSVTLLGLFICWILLNIGLIAMLIFMEFPYF 255

Query: 212 GWSYHQWY 219
            ++Y++W 
Sbjct: 256 LYAYYKWK 263


>gi|311258634|ref|XP_003127709.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1-like [Sus scrofa]
          Length = 385

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 308 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 367

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 368 G-RASDILSFAHKY 380


>gi|282876444|ref|ZP_06285310.1| lytic regulatory family protein [Staphylococcus epidermidis SK135]
 gi|281294696|gb|EFA87224.1| lytic regulatory family protein [Staphylococcus epidermidis SK135]
          Length = 309

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 35/230 (15%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +G    S        ILA +  +LF     I  + + L+ L  S     L+    I 
Sbjct: 108 AFKKGKYAKS-------VILALITLVLFIVIVLILVLLNKLYSLALSPILIGLQQ--SIS 158

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKR 138
                + +  +  ++  L+   +  I  + +    +           R    +L+EG K 
Sbjct: 159 GYDNPMGILITIQIVLLLITGFISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKG 218

Query: 139 I-YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           I         F    + I L+ +II   L      +   +S      +      V  VL 
Sbjct: 219 IKNGKKTWFKFFIGVLLISLLASIINKPLLFGVQYLTSSMSQTVAQTIIIIARIVSIVLR 278

Query: 198 MILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQK 247
           + L +I    +++                           G+  +K++++
Sbjct: 279 LCLYYILIFGIINYFVRR----------------------GDKPVKSKRR 306


>gi|257055641|ref|YP_003133473.1| hypothetical protein Svir_16110 [Saccharomonospora viridis DSM
           43017]
 gi|256585513|gb|ACU96646.1| hypothetical protein Svir_16110 [Saccharomonospora viridis DSM
           43017]
          Length = 543

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 61/199 (30%), Gaps = 23/199 (11%)

Query: 23  LNEGNAP--ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHI 80
             +G  P   ++    F  + A +I L                V++A   + ++ D++  
Sbjct: 274 RVKGEPPPPRAKGELTFIVLGAVVISLAAMVKIHAIVALGFFGVMIARRGKGRIADLA-- 331

Query: 81  VFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
                    +A+ L++   +   +    +  +    +  L+     +  VS    + ++ 
Sbjct: 332 ---------AAAVLMLVVFVTVTLAIGFATGLGLGWISALDTPSKVWSWVSPAAELGQLG 382

Query: 141 SINNLVNFM----------KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFF 190
            +  +V  +           S +   + G +    L +++      +     S+      
Sbjct: 383 GVFGVVLGLGNHTGSIIAILSVLGYAVAGAVTVKFLWDSFHWRYRPLIGLGVSLGAFMML 442

Query: 191 TVRKVLIMILLFIATLTVL 209
            V      +L  +  L   
Sbjct: 443 HVSMQPWWLLWAVIPLAAA 461


>gi|149057061|gb|EDM08384.1| rCG24726, isoform CRA_a [Rattus norvegicus]
          Length = 665

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 329 G-RASDILSFAHKY 341


>gi|145481343|ref|XP_001426694.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393770|emb|CAK59296.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2703

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/315 (9%), Positives = 100/315 (31%), Gaps = 58/315 (18%)

Query: 29   PISREASLFSSILACLI----YLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
               ++    +  L  L+     + F        ++ +++++   + +         +   
Sbjct: 2359 FKIQQVQTMAIYLFLLLQPNYVMEFMTLISSRVISGNMYIMANVSYRYDTFKHDQWIAAF 2418

Query: 85   THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP--SFKRVSLREGIKRIYSI 142
                L    +V+P +  ++ +     +     +   +       + R        +I+  
Sbjct: 2419 GVPGLILWLIVLPVIFWYICYQGAQQMKLNSIIFRQSWGFFYYEYSRKRYYWEFLKIF-Y 2477

Query: 143  NNLVNFM----------KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192
             +L++ +          K  +  I++     +++  N + +      +  S +  +   V
Sbjct: 2478 RSLISVLICYFQEEIIVKGILSFIVIYGYYGLTIHFNPYDLRKLNYLDQLSTVVLSLSLV 2537

Query: 193  RKVLI----------MILLFIATLTVLDIGWS-----------YHQWYSKLKMSKQEIKD 231
              V +          +       + +L+  +            + ++   L   + +IK+
Sbjct: 2538 VGVFLYRTIQINFFGLTYAGYVVIAILNAIFLLLLFYNLFEEKFQEFAQSLDQVRDKIKE 2597

Query: 232  EIKQSYGNPII------KNRQKSIARSRIRHKMMEATSRATIIITNPTHYALALRYIQTE 285
            +      NP I      + +    AR  +  ++ +  +R+             + + Q +
Sbjct: 2598 KYPHLQQNPHIGPLLQNRTKLNQKAR-IMWQQLSKIVNRS------------IINWRQDK 2644

Query: 286  NDAPVLVAKGQNLIA 300
            +  P++ A  ++  A
Sbjct: 2645 SK-PLVFAIYEDEPA 2658


>gi|15614020|ref|NP_242323.1| glycine betaine transporter [Bacillus halodurans C-125]
 gi|10174074|dbj|BAB05176.1| glycine betaine transporter [Bacillus halodurans C-125]
          Length = 566

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           RE      I+  L+ L++F + G  ++  +++     A     +    +   L  L LSA
Sbjct: 347 REFMAGVLIVPSLLALIWFTTFGGTALNLEMYGPGGIAELVTSQVELALFATLGELPLSA 406

Query: 92  SRLVIPGLLLFMMFGIGSYLIQR--IPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
              VI  LL+ + F   +         + +   ++P    V +  G              
Sbjct: 407 VTNVIAVLLILIFFITSADSASYVLGAMTSKGSLEPKLS-VKMVWGF------------- 452

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
                  L+    ++ L      +    +A+  + L  A   +  ++ ++ +F       
Sbjct: 453 -------LIAGTASVLLLSGGGGLQALQTASIIAALPFAVIMIMMIISLLFMF----AKD 501

Query: 210 DIGWSYHQWYSKLKMSKQEIKDEI 233
           D      +   +L   K+EI+DE+
Sbjct: 502 DRAERKQKQTKQLSTLKEEIRDEM 525


>gi|86140165|ref|ZP_01058727.1| membrane protein, putative [Roseobacter sp. MED193]
 gi|85823102|gb|EAQ43315.1| membrane protein, putative [Roseobacter sp. MED193]
          Length = 503

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 6/204 (2%)

Query: 28  APISR-EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86
             IS  + S    +LA + Y   F       + +   V    A+      ++        
Sbjct: 49  VAISMGDPSAALILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGYPMAKQGKAGKA 108

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
           L+++A      G +  ++  I +  +  + +L  +    +        G+  I +     
Sbjct: 109 LTIAAIASFAGGSIGALLLMIFAPALSSVALLFHSAEYFALM----VVGLSAIAAFAGTG 164

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
              K+ +   L G I+        F +  F            F T+   +  +   +  +
Sbjct: 165 QVAKALMMTTL-GLIMATVGEGALFNLPRFTMGIMDLQSGFGFITLAMAMFALPEALFLV 223

Query: 207 TVLDIGWSYHQWYSKLKMSKQEIK 230
               I     +    L++++QE K
Sbjct: 224 LKPKIQVGKGEEIKDLRITRQEAK 247


>gi|257069779|ref|YP_003156034.1| putative acyltransferase [Brachybacterium faecium DSM 4810]
 gi|256560597|gb|ACU86444.1| predicted acyltransferase [Brachybacterium faecium DSM 4810]
          Length = 691

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/188 (8%), Positives = 58/188 (30%), Gaps = 6/188 (3%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           +   + A +    F +S    +   ++     S    +    S +       + + +   
Sbjct: 185 VVLVLFALVALASFAWSLVSTAAQQEIAYFDTSTRMWEFAAGSLLALWPAANAAAPASRR 244

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY-----SINNLVNFMK 150
              +   + +   + LI    +++   + P +       G   ++           + + 
Sbjct: 245 ARRVRTVLGWAGLAALISTGALIDGRSMFPGWIAAIPLLGATGVFLAGTTGSRLGADRLL 304

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           +      +G +       ++  +   + ++          T+   + ++L ++ T  V+D
Sbjct: 305 ASRPFSFLGDVSYGLYLVHWPLLTLLLLSSGRETAGLLRGTLVIAVSLLLAWLLTR-VVD 363

Query: 211 IGWSYHQW 218
                 +W
Sbjct: 364 TPIRRWRW 371


>gi|262279071|ref|ZP_06056856.1| enterobactin exporter entS [Acinetobacter calcoaceticus RUH2202]
 gi|262259422|gb|EEY78155.1| enterobactin exporter entS [Acinetobacter calcoaceticus RUH2202]
          Length = 416

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 1/186 (0%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
           S+ A      +    G   VT+ + ++     +  +     I  +   L+   S  +   
Sbjct: 109 SLYAIYFLSAWDGFFGALGVTAMMAIMPVIVGRENIVQARAISMVSVRLATVISPAIGGI 168

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
           L+ F       ++     +L +  +      +  +        +  LV   K   K  +V
Sbjct: 169 LIAFSGVATVYWVSTVGTLLTV-FLLMGLPALKPQHAANGESPLRQLVQGFKFVFKNKVV 227

Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW 218
           G+ I I    ++ + +  I       ++H       ++   +   +TL  L  GW+    
Sbjct: 228 GSTILIGTLLSFSSAIRIIFPQMADEIFHGGAFELGLMYSAVPLGSTLGALLSGWTTRLR 287

Query: 219 YSKLKM 224
              L M
Sbjct: 288 RPGLVM 293


>gi|56461575|ref|YP_156856.1| DNA adenine methylase [Idiomarina loihiensis L2TR]
 gi|56180585|gb|AAV83307.1| DNA adenine methylase [Idiomarina loihiensis L2TR]
          Length = 290

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 296 QNLIAKKMRKIAYEHNIPIF---EEPSLARSLFKQVPI 330
           Q+ +A++  ++A + +IP+     +  L R+L+K   I
Sbjct: 206 QDELARRAVQVAKKRHIPVLISNHDTDLTRALYKHADI 243


>gi|307942346|ref|ZP_07657697.1| integral membrane protein [Roseibium sp. TrichSKD4]
 gi|307774632|gb|EFO33842.1| integral membrane protein [Roseibium sp. TrichSKD4]
          Length = 504

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 10/201 (4%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           + S    +LA + Y   F       + +   V    AT      ++        L+++A 
Sbjct: 55  DPSAALILLAGVYYGAIFGGSTSSILINAPGVASTVATSFDGYPLTRQGKAGKALTVAAI 114

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
              + G +  ++  I + ++  + +L  +    +        G+  I +        K+ 
Sbjct: 115 SSFVGGTVGAILLMIFAPMLASVALLFHSAEYFALM----VVGLSAIAAFAGTGQVGKAM 170

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
           + + L+G I+        F M  F        L   F  +   + M  L  A   +LD  
Sbjct: 171 L-MTLLGLIMATVGEGALFNMPRFTMGVMD--LQSGFGFITLAMAMFALPEAIFLILDPN 227

Query: 213 WSYH---QWYSKLKMSKQEIK 230
            S          L+++K+E K
Sbjct: 228 RSKTGSSNEIKDLRITKEEAK 248


>gi|254294956|ref|YP_003060979.1| major facilitator superfamily MFS_1 [Hirschia baltica ATCC 49814]
 gi|254043487|gb|ACT60282.1| major facilitator superfamily MFS_1 [Hirschia baltica ATCC 49814]
          Length = 439

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S    L S++   ++  L   +     V +    + ++    +      I  L T    +
Sbjct: 106 SASIGLMSALWGLIVLRLIIGAAEAVVVPASYRWIRSNFDPNESGTAVGIYMLGTKFGPA 165

Query: 91  ASRLVIPGL-------LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
               +   L       L+F++ GI   L     +  + +  P  ++ S     K+   I 
Sbjct: 166 FGAPIAAWLIVTMNWQLMFIVTGIAGLLWLIPWIFIVKNDMP--EQFSRTGNNKKKSPIP 223

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
                +KS +   L+   + I+   NYFT        P  ++     T++++ +      
Sbjct: 224 -----VKSILSSPLIWGTLVINFCYNYFTFFCMTWM-PSYLVEQRGLTLKEMGLYTFFSF 277

Query: 204 ATLTVL 209
           A + ++
Sbjct: 278 AGIAIV 283


>gi|317490342|ref|ZP_07948827.1| Na+/H+ antiporter [Eggerthella sp. 1_3_56FAA]
 gi|316910556|gb|EFV32180.1| Na+/H+ antiporter [Eggerthella sp. 1_3_56FAA]
          Length = 667

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 66/207 (31%), Gaps = 22/207 (10%)

Query: 27  NAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVLLASATQRKLEDISHIVFL 83
              I+   +   S++       F F  G+    ++    + ++       LE+ +    L
Sbjct: 164 QFAIAAAVTGTFSLVGATANFFFAFLGGVLVGVALGLTGNFIVRRVRSWGLENTT-FHVL 222

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
                     LV   L    +  + +  I    V++   + PS  R+++           
Sbjct: 223 FEVFVPFIVYLVANALGTSGIIAVVAAGILN--VVSPRAIGPSVSRMNIVSASV----WR 276

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            L   +   V  +L+GT            +   +     ++       +  +L + +L +
Sbjct: 277 VLTFALNGIV-FVLLGT-----------QLPRAMQRTWENVTIDNDALIGYILGITVLML 324

Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           A   +  +         + +M+  E++
Sbjct: 325 AARFLWVLIMERVHRQRRGRMTLDELR 351


>gi|257792476|ref|YP_003183082.1| sodium/hydrogen exchanger [Eggerthella lenta DSM 2243]
 gi|325833576|ref|ZP_08166025.1| putative Na+/H+ antiporter [Eggerthella sp. HGA1]
 gi|257476373|gb|ACV56693.1| sodium/hydrogen exchanger [Eggerthella lenta DSM 2243]
 gi|325485500|gb|EGC87969.1| putative Na+/H+ antiporter [Eggerthella sp. HGA1]
          Length = 667

 Score = 37.5 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 66/207 (31%), Gaps = 22/207 (10%)

Query: 27  NAPISREASLFSSILACLIYLLFFFSPGIY---SVTSDLHVLLASATQRKLEDISHIVFL 83
              I+   +   S++       F F  G+    ++    + ++       LE+ +    L
Sbjct: 164 QFAIAAAVTGTFSLVGATANFFFAFLGGVLVGVALGLTGNFIVRRVRSWGLENTT-FHVL 222

Query: 84  LTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN 143
                     LV   L    +  + +  I    V++   + PS  R+++           
Sbjct: 223 FEVFVPFIVYLVANALGTSGIIAVVAAGILN--VVSPRAIGPSVSRMNIVSASV----WR 276

Query: 144 NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            L   +   V  +L+GT            +   +     ++       +  +L + +L +
Sbjct: 277 VLTFALNGIV-FVLLGT-----------QLPRAMQRTWENVTIDNDVLIGYILGITVLML 324

Query: 204 ATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           A   +  +         + +M+  E++
Sbjct: 325 AARFLWVLIMERVHRQRRGRMTLDELR 351


>gi|328722024|ref|XP_003247461.1| PREDICTED: hypothetical protein LOC100574766 [Acyrthosiphon pisum]
          Length = 168

 Score = 37.5 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 172 TMLDFISANPHSILYHA-FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
            ++  I    +S +Y A   TV     ++   +     L   W Y++   + +  + EI+
Sbjct: 46  ALVPLIYGPMYSAVYKATLKTVPGAFFLLGGALTAPAALIFLWMYNEHKKERREKEAEIR 105

Query: 231 DEIKQSY 237
           DE K+S 
Sbjct: 106 DEEKKSE 112


>gi|325846944|ref|ZP_08169801.1| branched-chain amino acid ABC transporter, permease protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481186|gb|EGC84230.1| branched-chain amino acid ABC transporter, permease protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 311

 Score = 37.5 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 11/178 (6%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           E  +    L       +  +P +  +   L  +        +         ++ ++++  
Sbjct: 42  EGMMTIGALVAATVGYYVGNPWLGFLAGGLAGMFFGLIHAIVSVTFAGDQTISGIAIN-- 99

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
             + PGL LF+         Q   +   N +   F  +   +G+K I+S           
Sbjct: 100 -TLAPGLALFLARLFFDGATQTPSIPLENKIPRLFDGLIKNQGLKNIFSQYA-------T 151

Query: 153 VKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
           V + L+  I + + L +  + +                 +VRK+  + ++F   +  L
Sbjct: 152 VYLALISVILLYVFLYKTKWGLRLIAVGEHPKAAETLDISVRKIRYLAVMFSGFMGGL 209


>gi|291403995|ref|XP_002718334.1| PREDICTED: transient receptor potential cation channel, subfamily
           M, member 6-like [Oryctolagus cuniculus]
          Length = 1653

 Score = 37.5 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVALVVEGGPNVVSVVLEYLREDPPVPVVVCDGS 328

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 329 G-RASDILSFAHKY 341


>gi|221127332|ref|XP_002165091.1| PREDICTED: similar to GF24139, partial [Hydra magnipapillata]
          Length = 539

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 13/189 (6%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
            A     +L  L+  +      +YS++ D  +    +       +  I  +L+ L +   
Sbjct: 345 SAGAICGLLGSLLVSIIPIPRMLYSMSQDGLLFNFFSIVHPKSQVPVISTILSGLFIGIL 404

Query: 93  RLVIPGLLLFMMFGIG-----SYLIQRIPVLNLNHVKP---SFKRVSLREGIKRIYSINN 144
             +I    L  M  IG     S ++  + +L  +   P   +++  SL E  K   S  N
Sbjct: 405 AAIIDLAELVEMMSIGTLLAYSIVVICVLILRYDLTPPPNNNYESESLIENEKNK-SAKN 463

Query: 145 LVNFMKSFVKIILVGTIITISL----TENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
                     I LV T+I + +     +N    +  I   P   L+   + +  +  +  
Sbjct: 464 CFEAGCIIFIIALVATVIYLFVKDTTKDNLAFKVPMIPWIPVVALFFNVYLMSMLSQITW 523

Query: 201 LFIATLTVL 209
           +       +
Sbjct: 524 IRFGIWLFI 532


>gi|218530989|ref|YP_002421805.1| ABC transporter [Methylobacterium chloromethanicum CM4]
 gi|218523292|gb|ACK83877.1| ABC transporter related [Methylobacterium chloromethanicum CM4]
          Length = 595

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 1/165 (0%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                ++      +L  ++  +    +      A         I   + L T L    + 
Sbjct: 33  LVTAITLATLADVMLPLYAGRLVDALAGAERQAALQAALPAFAIMTALSLATVLLRHVAW 92

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN-FMKSF 152
            ++  L L  M  I S    R+   +      +F   ++R+  + +++++ L +  + S 
Sbjct: 93  SLVVPLTLGTMSDIASQSFARVQRFSTEWHANTFSGSTVRKISRGMWALDGLNDVLLLSI 152

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLI 197
           +  ++V    T+ L  ++  M   I     + +  A F   +V+ 
Sbjct: 153 LPSVVVLAGTTVVLGLHWPAMGAVIGLGTLAYVGTAVFLATRVIA 197


>gi|325962988|ref|YP_004240894.1| nitrate/nitrite transporter [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469075|gb|ADX72760.1| nitrate/nitrite transporter [Arthrobacter phenanthrenivorans Sphe3]
          Length = 448

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 17/174 (9%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           +A   ++++A  +       P I    S     L  +T   L   +        L     
Sbjct: 248 DAGTVAALMALYVAAAMAVGPFIGRFVS--RHPLRRSTMVLLIAGATAGAWAAVLLTPGR 305

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN---FM 149
             +     L ++  +G                   +  +      R+ +   +VN   F+
Sbjct: 306 APLWLLAGLVVVLAVGGPGSMIGFDFA--------RTFNPA---HRMGTATGIVNVGGFI 354

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
            + V I L+G ++ +     +   +     +P  I     F +  +    +L  
Sbjct: 355 AALVAIFLIGLVLDVLFASGFSNGV-LYGLDPFRIAMSVQFLLLGLGAGAMLVC 407


>gi|198463605|ref|XP_001352881.2| GA20373 [Drosophila pseudoobscura pseudoobscura]
 gi|198151332|gb|EAL30382.2| GA20373 [Drosophila pseudoobscura pseudoobscura]
          Length = 1379

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 63/177 (35%), Gaps = 21/177 (11%)

Query: 81   VFLLTHLSLSASRLVIPG-LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI 139
            +++     L    ++ PG + L M+  + +     I    L +  P    +     +K+ 
Sbjct: 887  MYVWYQGMLMIGTVLGPGTIFLMMVGALVAVFTINIWTAFLWNFFPILFFILSCVYLKQK 946

Query: 140  YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
            + +  L+ F+ S +  +++  ++   + +          A+   +L     T+  ++   
Sbjct: 947  FQL--LIAFVISALYCLVMMAVLIGIIVQMMEDGP-LAPASLFFLLVAVQITIAGLMHPQ 1003

Query: 200  LLFIATLTVLDIGWSYHQWYSKLKM-------------SKQE--IKDEIKQSYGNPI 241
              +     V+        +   L M             +++   +KD+ K S G+P 
Sbjct: 1004 EFWALLCGVIYYITIPSMYM--LLMIFSVFNMNDVSWGTREAPVLKDDDKDSPGDPE 1058


>gi|325989805|ref|YP_004249504.1| hypothetical protein Msui04570 [Mycoplasma suis KI3806]
 gi|323574890|emb|CBZ40550.1| hypothetical protein Msui04570 [Mycoplasma suis]
          Length = 165

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           ++     +++ D S  ++L T L +    L IP + L +++ + S+     P ++ +   
Sbjct: 1   MIFFNNGQQMIDNSGDIYLATRLLMMFYWLTIPSIALILIWSLYSF-----PKMDWSKNF 55

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PSF R         I+    L   +   +  IL+      +L  N               
Sbjct: 56  PSFSRFFPYLKNLSIFGWVILGTLI--LINTILLVFYAIDTLALNNVDKYAVYWKYKVQE 113

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
                F V  ++  IL +I  +   +  W  + + SKL +S +++
Sbjct: 114 RPVLSFFVVTIMGFILYWILAIVCYNTFWEKY-FNSKLNLSLKDL 157


>gi|170690340|ref|ZP_02881507.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
 gi|170144775|gb|EDT12936.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis
           C4D1M]
          Length = 635

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 28  APISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLASATQRKLEDISHIVFLLTH 86
            P  R+AS+        +         +Y S++     L+       L    H    L  
Sbjct: 83  VPRHRKASVLIGGFVGNLAANLLGGESLYVSLSFTACGLIEVCAAALLLPQVHSANELIV 142

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRI------------PVLNLNHVKPSFKR--VSL 132
             +    ++I G+   ++ G+ + L+                V++ +     F    +++
Sbjct: 143 PRILFRFVIIAGIFAPLISGLAAVLLLEGVFTTHPFSSFSNWVISDSLGILIFTPVTINM 202

Query: 133 REGIKRIY---SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAF 189
             G  R +            KS   ++LVG +  +   +N  ++L ++      + +HA 
Sbjct: 203 ISGEWRSFLQPGSRA-----KSVALLLLVGCVTALIFGQNTHSLLYWVLPPLALLAFHAE 257

Query: 190 FTVRKVLIMILLFIAT 205
            +   + I+I + IA 
Sbjct: 258 LSTVLLGILICISIAV 273


>gi|297625376|ref|YP_003687139.1| Cytochrome d ubiquinol oxidase, subunit II [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921141|emb|CBL55688.1| Cytochrome d ubiquinol oxidase, subunit II [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 377

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96
             +L  ++++L F + G   +    +  +   T + +  ++ +   +  + + A+ +   
Sbjct: 183 FGLLGGVLFILLFCTHGSMFLALKTYGSIHDKTVKFVHTLAPVTVAVLLIFVLAANIFYG 242

Query: 97  ----PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
               P L       + +  +  + VL L  +    +R     G   I +  +        
Sbjct: 243 TSKNPYLGSLSTVLMWAAGLLSVVVLGLAALAQRAER----NGWAFIGTGAS-------- 290

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
             I+L+  +I + +      +   +S   + +   +     K++     F+  + +   G
Sbjct: 291 --ILLMLAMIFVKMYGTLGFISADMSNPLNMVTASSSPLTLKLMTWFACFLVPVVLAYQG 348

Query: 213 WSYHQWYSKLKMSKQEIKDEIKQSYGNPII 242
           WSY  +  +L  +K     E+ +    P +
Sbjct: 349 WSYWVFSKRLS-TK-----EMPEHEHEPNV 372


>gi|299069990|emb|CBJ41276.1| putative transcription regulator [Ralstonia solanacearum CMR15]
          Length = 328

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFE--------EPSLARSLFKQ-VPINSAIPPV 337
             P  +  G + +A  + ++A  H I + E        +  L+R L+     +   I  +
Sbjct: 226 PRPTAIFAGNDDMAAGVLRVAQAHGIRVPEDLSIAGYDDTPLSRQLWPSLTTVRQPIQDM 285

Query: 338 FYKAVAQLIY 347
            Y AV QLI 
Sbjct: 286 AYAAVEQLIA 295


>gi|119196979|ref|XP_001249093.1| hypothetical protein CIMG_02864 [Coccidioides immitis RS]
 gi|303322072|ref|XP_003071029.1| Endomembrane family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110728|gb|EER28884.1| Endomembrane family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320032767|gb|EFW14718.1| endosomal integral membrane protein [Coccidioides posadasii str.
           Silveira]
          Length = 652

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/199 (9%), Positives = 51/199 (25%), Gaps = 27/199 (13%)

Query: 42  ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL--------EDISHIVFLLTHLSLSASR 93
             LI   F  S G Y            A ++ +          +  + F L  +      
Sbjct: 391 VILILYTFLGSIGGYVSARAYKSFGGEAWKQLIIATPLVLPAIVFSVFFFLNFILWIKGA 450

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPS-------------FKRVSLREGIKRIY 140
                    ++  +  ++I     +  + +                 +++    G  R+ 
Sbjct: 451 SGAVPFTTMVVIVLIWFIISVPLSVAGSWIGFKQPALEGPTKTNQIPRQIPPAVGSLRLI 510

Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
                   +   +    +   +   +   +   + ++       L +    +   +  IL
Sbjct: 511 P----STLIAGLLPFAAIFVELYFIMNSLWTGKIYYMFGFL--FLCYGLMIMMSAMTTIL 564

Query: 201 LFIATLTVLDIGWSYHQWY 219
           L    L   D  W +  + 
Sbjct: 565 LVYFLLCAEDYRWQWRSFI 583


>gi|226942575|ref|YP_002797648.1| glucose/galactose transporter protein [Azotobacter vinelandii DJ]
 gi|226717502|gb|ACO76673.1| glucose/galactose transporter protein [Azotobacter vinelandii DJ]
          Length = 429

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 11/189 (5%)

Query: 28  APISREASLFSSILACLIYLLFFFSPGIYSV-TSDLHVLLASATQRKLEDISHIVFLLTH 86
            P  ++    S   A L+   FFF+  + S+    L   +       +  ++     L  
Sbjct: 46  VPKLKDLFSLSYTEAMLVQSAFFFAYFVASIPAGLLISRIGYMKAAVVGLLTMAAGCLMF 105

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
           +  + S L    L    +  +G   +Q +    L+ + P     S     +   S+   V
Sbjct: 106 IPATLSTLFPAFLGALFILAVGVTTVQVVANPLLSLLGPGSTAHSRLTLGQGFNSLGTTV 165

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
                      +G I+ +              A   + L H    +    + I L I  +
Sbjct: 166 --------APYIGAILILGALNEVDP-STLSGAELSAFLAHEASVISNTYVGIALIICLI 216

Query: 207 TVLDIGWSY 215
             + +    
Sbjct: 217 AAI-VWLQR 224


>gi|315576293|gb|EFU88484.1| membrane family protein [Enterococcus faecalis TX0309B]
 gi|315582785|gb|EFU94976.1| membrane family protein [Enterococcus faecalis TX0309A]
          Length = 542

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             +    + +E    +   L +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 102 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 161

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 162 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 207

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 208 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 248


>gi|297583801|ref|YP_003699581.1| TRAP transporter, 4TM/12TM fusion protein [Bacillus
           selenitireducens MLS10]
 gi|297142258|gb|ADH99015.1| TRAP transporter, 4TM/12TM fusion protein [Bacillus
           selenitireducens MLS10]
          Length = 652

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 19/214 (8%)

Query: 15  SSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKL 74
           + K+I  AL EG         + +   A +I  +  F+     +   L  L        L
Sbjct: 411 TPKRIIAALEEG--ARVALPVIAACASAGIIVGIVVFTGLGGKIAGGLLGLAGDNLFLLL 468

Query: 75  EDISHIVFLLTHLS------LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFK 128
                   LL          +  + +  P L+ F +  I ++       +  +   P   
Sbjct: 469 FFTMIACILLGMGLPTTANYVVTASMAAPALIEFGVPEISAHFFVFYFGIVADITPPVCL 528

Query: 129 RVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA 188
                 GI R   +   V    +  K+ + G II       Y   L  + A+  ++++  
Sbjct: 529 AAYAGAGIARANPMKAGV----TAFKLAIAGFIIPYVFV--YNPALLLVDADVMTVIFLV 582

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
             ++  +       I+ + +    +S+  +   L
Sbjct: 583 LTSLLGM-----AAISAVMMNYFIYSFKWYERLL 611


>gi|17549856|ref|NP_523196.1| transcription regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17432112|emb|CAD18788.1| probable transcription regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 355

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 287 DAPVLVAKGQNLIAKKMRKIAYEHNIPIFE--------EPSLARSLFKQ-VPINSAIPPV 337
             P  +  G + +A  + ++A  H I + E        +  L+R L+     +   I  +
Sbjct: 253 PRPTAIFAGNDDMAAGVLRVAQAHGIRVPEELSIAGYDDTPLSRQLWPSLTTVRQPIQDM 312

Query: 338 FYKAVAQLIY 347
            Y AV QLI 
Sbjct: 313 AYAAVEQLIA 322


>gi|332686321|ref|YP_004456095.1| hypothetical protein MPTP_0822 [Melissococcus plutonius ATCC 35311]
 gi|332370330|dbj|BAK21286.1| hypothetical protein MPTP_0822 [Melissococcus plutonius ATCC 35311]
          Length = 462

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 67/192 (34%), Gaps = 4/192 (2%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           + ++F  +   ++ +    +       +   ++  +     +                  
Sbjct: 69  DYNIFLLLFIGVMCVTTIINRQYGLFANIKLIMNEAIYFFVIYRFGQTQTNAMLTIQRFV 128

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
           +++I   L+F+   +G +L Q      L +    F  + L     R++ + +  NF  + 
Sbjct: 129 KILIGLWLIFVTISLGMFLTQTKYSFTLKN---RFHPLRLGFLENRLFGVFSDPNFASTI 185

Query: 153 VKIILVGTIITISLTENYFTMLDFISANP-HSILYHAFFTVRKVLIMILLFIATLTVLDI 211
             I+++ ++  +   +   ++  F++ N    +L+      R  +I + + +A    +  
Sbjct: 186 SLIVIIMSLYYLFAIKIKISIKVFLAINVFFQLLFILLSGSRTGMIELTIGLAFFLFIYC 245

Query: 212 GWSYHQWYSKLK 223
             +        K
Sbjct: 246 YTTNLMHIKNSK 257


>gi|281208928|gb|EFA83103.1| presenilin family protein [Polysphondylium pallidum PN500]
          Length = 2764

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK-------RIYSINNL 145
           ++V   + +F    + + +I+ I V +     P   R+ +  G K       +   +N L
Sbjct: 151 QMVSIAIPVFFTMVVVTAVIRAISVPDNQSSPPPANRIDIPAGFKYDTDPNIQQVFLNTL 210

Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
           +N +  F+ ++++ T+I + L +  F    +      SIL    F     ++++      
Sbjct: 211 INSL-IFLGVVVLSTVIMVILYKFKFMKALYGWLMATSILLLGVFGGFLFILILTYVNIA 269

Query: 206 LTVLDIGWSYHQW 218
           L  L   +    +
Sbjct: 270 LDYLTFVFVVWNF 282


>gi|281412763|ref|YP_003346842.1| metal dependent phosphohydrolase [Thermotoga naphthophila RKU-10]
 gi|281373866|gb|ADA67428.1| metal dependent phosphohydrolase [Thermotoga naphthophila RKU-10]
          Length = 428

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 15/195 (7%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
            SILA   +L+F FS    +      VL+   T    +      F  T   +  S + I 
Sbjct: 18  LSILAFYFFLIFVFSDYTDNWHGFGFVLILFLTSVFFDIARTKTFEFTGGKVETSAVFIV 77

Query: 98  GLLLFMMF-GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV--- 153
            +    +   + + L+     +    +K  F            +S   +  F+ S +   
Sbjct: 78  NIFTAALLNPLEASLVAASSAITFKIIKLFFGERYPISRYVFNFSQIAVSTFLTSLLFHR 137

Query: 154 ----------KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
                       IL+ T++   L  N F            I   A   +   +  + L I
Sbjct: 138 LSGTNTFQNILAILLSTVVY-FLINNVFVFFGVYILTKGDIRETASKVLSGPVTSMALMI 196

Query: 204 ATLTVLDIGWSYHQW 218
             + V+ I + Y  +
Sbjct: 197 PVIAVIYILYQYIGF 211


>gi|292488730|ref|YP_003531617.1| hypothetical protein EAMY_2259 [Erwinia amylovora CFBP1430]
 gi|292899886|ref|YP_003539255.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291199734|emb|CBJ46854.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291554164|emb|CBA21371.1| Uncharacterized protein yegE [Erwinia amylovora CFBP1430]
          Length = 848

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 23/198 (11%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           R   L + + ACL ++L  +   +  V   +  L                 L+T +    
Sbjct: 13  RSLCLNALLFACLSFVLTLYCLELIKVIGQISPLWF------------PTALMTVVVFRH 60

Query: 92  SRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPSFKRVSLREG---IKRIYSINNLVN 147
               +P LL   + G+  + ++     L+ + V P    +    G   ++R+   N+ +N
Sbjct: 61  PTRDLPYLLSGCVIGLTCANVLFSGFSLS-SLVFPLVNLLQALAGGMLLRRLLDRNSPLN 119

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
            + S++K+++V  I    L       L                 +    +   + +  L 
Sbjct: 120 SLLSWLKMVVVAGIFISVLGGVMAYWL------LQPAANSTLHFLTTWTLSEAIGMLALG 173

Query: 208 VLDIGWSYHQWYSKLKMS 225
            + + W        L+ +
Sbjct: 174 PVGLLWQTDYVRRHLRQT 191


>gi|212696640|ref|ZP_03304768.1| hypothetical protein ANHYDRO_01181 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676371|gb|EEB35978.1| hypothetical protein ANHYDRO_01181 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 311

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 11/178 (6%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           E  +    L       +  +P +  +   L  +        +         ++ ++++  
Sbjct: 42  EGMMTIGALVAATVGYYVGNPWLGFLAGGLAGMFFGLIHAIVSVTFAGDQTISGIAIN-- 99

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
             + PGL LF+         Q   +   N +   F  +   +G+K I+S           
Sbjct: 100 -TLAPGLALFLARLFFDGATQTPSIPLENKIPRLFDGLIKNQGLKNIFSQYA-------T 151

Query: 153 VKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
           V + L+  I + + L +  + +                 +VRK+  + ++F   +  L
Sbjct: 152 VYLALISVILLYVFLYKTKWGLRLIAVGEHPKAAETLDISVRKIRYLAVMFSGFMGGL 209


>gi|47092451|ref|ZP_00230241.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           str. 4b H7858]
 gi|47019228|gb|EAL09971.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           str. 4b H7858]
          Length = 602

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
             FS + A   +LL             L  ++     R+L   +   F+L  + L     
Sbjct: 124 GTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 183

Query: 95  VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149
           ++   +    ++  +   ++      +   + P   +++L         I+S+N LV   
Sbjct: 184 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 237

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                 IL+GT +   L   +             IL   F  +    + IL F
Sbjct: 238 -----FILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 285


>gi|320542222|ref|NP_001188648.1| paralytic, isoform BA [Drosophila melanogaster]
 gi|318069438|gb|ADV37730.1| paralytic, isoform BA [Drosophila melanogaster]
          Length = 2132

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1306 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1365

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1366 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1424

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1425 VQAIPSIFNVLLVCLIFWLIF 1445


>gi|320542208|ref|NP_001188641.1| paralytic, isoform AT [Drosophila melanogaster]
 gi|318069431|gb|ADV37723.1| paralytic, isoform AT [Drosophila melanogaster]
          Length = 2056

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1230 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1289

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1290 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1348

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1349 VQAIPSIFNVLLVCLIFWLIF 1369


>gi|320542206|ref|NP_001188640.1| paralytic, isoform AS [Drosophila melanogaster]
 gi|318069430|gb|ADV37722.1| paralytic, isoform AS [Drosophila melanogaster]
          Length = 2067

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1241 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1300

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1301 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1359

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1360 VQAIPSIFNVLLVCLIFWLIF 1380


>gi|320542188|ref|NP_001188631.1| paralytic, isoform AJ [Drosophila melanogaster]
 gi|318069421|gb|ADV37713.1| paralytic, isoform AJ [Drosophila melanogaster]
          Length = 2132

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1306 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1365

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1366 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1424

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1425 VQAIPSIFNVLLVCLIFWLIF 1445


>gi|229102993|ref|ZP_04233682.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28]
 gi|228680408|gb|EEL34596.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28]
          Length = 801

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 28/214 (13%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+FS +++  I++  F              ++A         ++ ++F   ++  S   
Sbjct: 10  LSIFSLLVSAAIFIQVFLVHSRRYFEKFYGGIIA---------VTLMLFSFPYMGFSYDL 60

Query: 94  LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            V+P +L F+ FG       + S +I RI  +      P    +          S++ L 
Sbjct: 61  RVVPLILSFIYFGRIAGWITLISIIIMRIFFIGGYWEPPVIAYL----------SMSVLF 110

Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
              K++ K +       +  S+      ++               +    +LI + L  A
Sbjct: 111 FTFKTYFKNLHPFKSASLYFSIFVGIKWLVGVFFNTTLLYSGGLLYIALGLLIGLFLMEA 170

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              +  +     +   +LK SKQE+ D + +  G
Sbjct: 171 YQRLYYLTQDLSKMNRELKKSKQELTDTVHELQG 204


>gi|163788499|ref|ZP_02182945.1| hypothetical protein FBALC1_08958 [Flavobacteriales bacterium
           ALC-1]
 gi|159876819|gb|EDP70877.1| hypothetical protein FBALC1_08958 [Flavobacteriales bacterium
           ALC-1]
          Length = 1103

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 12/139 (8%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
            L     LLF FS     +   L  L+      +L D +  V++ T L ++   +     
Sbjct: 104 FLGSFTVLLFVFSGIPLGMI--LGELMPWTAADELLDFNGFVYIKTFLLVTIPTVFFGAA 161

Query: 100 LLFMMFGIGSYLI----QRIPVLN----LNHVKPSF--KRVSLREGIKRIYSINNLVNFM 149
           L F+   +   L+    Q I +         +   F    +         +   +     
Sbjct: 162 LFFVTGALSRNLVVVYTQGIFLFVVFMLTKAITNDFWQAVLDPFSLTTTTFITKSWTALE 221

Query: 150 KSFVKIILVGTIITISLTE 168
           KS  ++  +G ++   L  
Sbjct: 222 KSTQELPFIGALLYNKLFW 240


>gi|403444|gb|AAB59192.1| sodium channel alpha subunit [Drosophila melanogaster]
          Length = 2077

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1251 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1310

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1311 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1369

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1370 VQAIPSIFNVLLVCLIFWLIF 1390


>gi|320542196|ref|NP_001188635.1| paralytic, isoform AN [Drosophila melanogaster]
 gi|318069425|gb|ADV37717.1| paralytic, isoform AN [Drosophila melanogaster]
          Length = 2143

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1317 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1376

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1377 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1435

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1436 VQAIPSIFNVLLVCLIFWLIF 1456


>gi|228470577|ref|ZP_04055434.1| ABC-type transporter permease protein [Porphyromonas uenonis 60-3]
 gi|228307704|gb|EEK16680.1| ABC-type transporter permease protein [Porphyromonas uenonis 60-3]
          Length = 447

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 73/196 (37%), Gaps = 10/196 (5%)

Query: 25  EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
           +G    S  +      +     +L F S     V S +     +     +      + ++
Sbjct: 174 KGEEAKSSGSLAGVIGMVLSGIILAFMSNYSGQVMSGVLEEKKNRIMEVIVSTVRPIEMM 233

Query: 85  THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE--GIKRIYSI 142
               +    + +  + ++++FG   +++  +  +   +   +  ++   +  G+    S+
Sbjct: 234 IAKMVGVFLVGLTQVAIWLIFGGIIFVVGSLVAVGGVYDLSALSQLDPAQMGGLAGGMSM 293

Query: 143 NNLVNFMKSF--------VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRK 194
           +++     S         V++I++  +  I     Y ++   I ++  S    + F +  
Sbjct: 294 DSVTEMQSSLEVLQSINFVQLIIMLLVYFIGGYLLYASLFAAIGSSVSSDEDASQFMMPF 353

Query: 195 VLIMILLFIATLTVLD 210
           VL+M+L F   +  +D
Sbjct: 354 VLVMMLGFYIAMGSMD 369


>gi|168179699|ref|ZP_02614363.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           NCTC 2916]
 gi|182669439|gb|EDT81415.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           NCTC 2916]
          Length = 465

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSTQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           PG++   + G+ +       +          ++   FK++    G+ + +        +K
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S   + ++G +IT  L       +  ++     ++       +   I++ + I  ++  D
Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313

Query: 211 I 211
            
Sbjct: 314 F 314


>gi|116007172|ref|NP_001036281.1| paralytic, isoform C [Drosophila melanogaster]
 gi|113193613|gb|ABI30986.1| paralytic, isoform C [Drosophila melanogaster]
          Length = 2131

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444


>gi|157120488|ref|XP_001659662.1| adenylate cyclase type [Aedes aegypti]
 gi|108874930|gb|EAT39155.1| adenylate cyclase type [Aedes aegypti]
          Length = 1982

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 71/188 (37%), Gaps = 30/188 (15%)

Query: 58  VTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPV 117
           ++S L +LLA   +    D+S    L         RL I    + +++ +G   +     
Sbjct: 739 ISSILMLLLAVRLKWIFWDLSQSFSL---------RLAITVFTIVLLYSVGQVNVFTCLS 789

Query: 118 LNLNHVKPSFKRVSLRE--GIKRIYSINNLVNFM------------KSFVKIILVGTIIT 163
            +      + K V   +   + +  S++   +F+            K+F+ I+L+G +  
Sbjct: 790 DHPCTTNFTTKAVDPFQHCALPQYISLSAAFSFLTVSIFLRLPIMVKTFL-IMLMGIMYC 848

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA------TLTVLDIGWSYHQ 217
           + +  ++  + D       S +     ++ +++I ++  +A          LD  W    
Sbjct: 849 LFIELSHTNIFDCYDQRVESAIPLHTISLARIIIFMIAILAHGRQVEWTARLDFLWQLQA 908

Query: 218 WYSKLKMS 225
              K +MS
Sbjct: 909 SQEKKEMS 916


>gi|194893768|ref|XP_001977935.1| GG19319 [Drosophila erecta]
 gi|190649584|gb|EDV46862.1| GG19319 [Drosophila erecta]
          Length = 2130

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444


>gi|30582781|gb|AAP35617.1| tubulin, beta, 4 [Homo sapiens]
 gi|61362358|gb|AAX42206.1| tubulin beta 4 [synthetic construct]
 gi|61362363|gb|AAX42207.1| tubulin beta 4 [synthetic construct]
 gi|119587079|gb|EAW66675.1| hCG2042771 [Homo sapiens]
          Length = 797

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS---- 88
           +    SS+L+ L +L         S+   L         R    ++ I       S    
Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFI 180

Query: 89  ------LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
                      LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 181 AYYDHVAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312


>gi|24642537|ref|NP_523371.2| paralytic, isoform A [Drosophila melanogaster]
 gi|150421666|sp|P35500|SCNA_DROME RecName: Full=Sodium channel protein para; AltName: Full=Protein
            paralytic; AltName: Full=Sodium channel 1; Short=DmNav1
 gi|22832381|gb|AAF48617.2| paralytic, isoform A [Drosophila melanogaster]
          Length = 2131

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444


>gi|320542194|ref|NP_001188634.1| paralytic, isoform AM [Drosophila melanogaster]
 gi|318069424|gb|ADV37716.1| paralytic, isoform AM [Drosophila melanogaster]
          Length = 2083

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1257 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1316

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1317 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1375

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1376 VQAIPSIFNVLLVCLIFWLIF 1396


>gi|194768088|ref|XP_001966146.1| GF19518 [Drosophila ananassae]
 gi|190623031|gb|EDV38555.1| GF19518 [Drosophila ananassae]
          Length = 2136

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1364

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444


>gi|225154882|ref|ZP_03723380.1| cell cycle protein [Opitutaceae bacterium TAV2]
 gi|224804412|gb|EEG22637.1| cell cycle protein [Opitutaceae bacterium TAV2]
          Length = 403

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 6/191 (3%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           +  S +         FS  ++     L  L A A       +    F +    L     +
Sbjct: 21  ILLSAIGVAFIYSAQFSTSLHDWKKQLVWLAAGAVTYTAVSLIDYRFWMNIAHLFYIACM 80

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKP----SFKRVSLREGIKRIYSINNLVNFMKS 151
           IP L++ +  G   +  QR         +P        + +   I     I  L   +++
Sbjct: 81  IP-LVIVLFAGEERFGAQRWLDFGFFAFQPSETAKAGTLLITASILARSQIGTLRESLRT 139

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
             K+ L   +    + +    +   I   P          +     M +L    + V  +
Sbjct: 140 LGKLALAVGLPIFLILQQ-PDLKSAIVLPPMVFSMLYIAQLSTRFFMAVLGAFAVVVGIV 198

Query: 212 GWSYHQWYSKL 222
            W  H +   +
Sbjct: 199 AWDAHGYMKFM 209


>gi|403447|gb|AAB59195.1| sodium channel alpha subunit [Drosophila melanogaster]
          Length = 2131

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1305 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1364

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1365 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1423

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1424 VQAIPSIFNVLLVCLIFWLIF 1444


>gi|12852708|dbj|BAB29509.1| unnamed protein product [Mus musculus]
          Length = 372

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|325571081|ref|ZP_08146653.1| malate permease [Enterococcus casseliflavus ATCC 12755]
 gi|325156166|gb|EGC68352.1| malate permease [Enterococcus casseliflavus ATCC 12755]
          Length = 318

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
            I+  L  ++ +F+  ++   + +      A        + I   L           +P 
Sbjct: 73  MIIPLLSMMITYFAGYLWRRFAQVEAKHQGAFSAMFTFSNTIFIGLPINLAIFGEKAVPY 132

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSF--KRVS--LREGIKRIYSINNLVNFMKSFVK 154
           +LL+ +  + + L   I +  L    P F   R+S      +K+I+S             
Sbjct: 133 VLLYYI--VNTTLFWTIGIFELAKDNPDFGEARISFHPLVMLKKIFSP------------ 178

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
             L+G II +        +    +    S +      +  +   + +FI  + V      
Sbjct: 179 -ALIGFIIGL--------IWMLFTLPLPSFVDGLGSYLADLTTPLSMFIIGIIV------ 223

Query: 215 YHQWYSKLKMSKQ 227
           Y      L+M+K 
Sbjct: 224 YFGGLKNLRMTKD 236


>gi|320542184|ref|NP_001188629.1| paralytic, isoform AH [Drosophila melanogaster]
 gi|318069419|gb|ADV37711.1| paralytic, isoform AH [Drosophila melanogaster]
          Length = 2107

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1281 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1340

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1341 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1399

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1400 VQAIPSIFNVLLVCLIFWLIF 1420


>gi|170760976|ref|YP_001787382.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407965|gb|ACA56376.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 465

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           PG++   + G+ +       +          ++   FK++    G+ + +        +K
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S   + ++G +IT  L       +  ++     ++       +   I++ + I  ++  D
Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313

Query: 211 I 211
            
Sbjct: 314 F 314


>gi|320542158|ref|NP_001188616.1| paralytic, isoform U [Drosophila melanogaster]
 gi|318069406|gb|ADV37698.1| paralytic, isoform U [Drosophila melanogaster]
          Length = 2118

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1292 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1351

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1352 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1410

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1411 VQAIPSIFNVLLVCLIFWLIF 1431


>gi|312172882|emb|CBX81138.1| Uncharacterized protein yegE [Erwinia amylovora ATCC BAA-2158]
          Length = 734

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 23/198 (11%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           R   L + + ACL ++L  +   +  V   +  L                 L+T +    
Sbjct: 13  RSLCLNALLFACLSFVLTLYCLELIKVIGQISPLWF------------PTALMTVVVFRH 60

Query: 92  SRLVIPGLLLFMMFGIG-SYLIQRIPVLNLNHVKPSFKRVSLREG---IKRIYSINNLVN 147
               +P LL   + G+  + ++     L+ + V P    +    G   ++R+   N+ +N
Sbjct: 61  PTRDLPYLLSGCVIGLTCANVLFSGFSLS-SLVFPLVNLLQALAGGMLLRRLLDRNSPLN 119

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
            + S++K+++V  I    L       L                 +    +   + +  L 
Sbjct: 120 SLLSWLKMVVVAGIFISVLGGVMAYWL------LQPAANSTLHFLTTWTLSEAIGMLALG 173

Query: 208 VLDIGWSYHQWYSKLKMS 225
            + + W        L+ +
Sbjct: 174 PVGLLWQTDYVRRHLRQT 191


>gi|258569325|ref|XP_002543466.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903736|gb|EEP78137.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 650

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/192 (8%), Positives = 50/192 (26%), Gaps = 15/192 (7%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
            F   +   +    + S G  +    +                 + F+L     S +   
Sbjct: 395 TFLGFIGGYVASRTYKSFGGEAWKRLIIATPLILPAIIFSVFFFLNFILWVKGASGAVPF 454

Query: 96  IPGLLLFMMFGIGSYLIQRIPVL---------NLNHVKPSFKRVSLREGIKRIYSINNLV 146
              +++ +++ + S  +                        +++    G  R+       
Sbjct: 455 TTMIVIVLIWFVISVPLSVGGSWIGFKQPALEGPTKTNQIPRQIPPAVGSLRLVP----S 510

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
             +  F     +   +   +   +   + ++       L +    +   +  +LL    L
Sbjct: 511 TLIAGFFPFAAIFVELYFIMNSLWTGKIYYMFGFL--FLCYGLMIMMSAMTTVLLVYFLL 568

Query: 207 TVLDIGWSYHQW 218
              D  W +  +
Sbjct: 569 CAEDYRWQWRSF 580


>gi|320542192|ref|NP_001188633.1| paralytic, isoform AL [Drosophila melanogaster]
 gi|318069423|gb|ADV37715.1| paralytic, isoform AL [Drosophila melanogaster]
          Length = 2111

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1285 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1344

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1345 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1403

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1404 VQAIPSIFNVLLVCLIFWLIF 1424


>gi|260433570|ref|ZP_05787541.1| cytochrome oxidase assembly [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417398|gb|EEX10657.1| cytochrome oxidase assembly [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 381

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 19/185 (10%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
            ++ L     +L F +  I+ +  +   L+ +   ++    S    LL    L       
Sbjct: 187 LATHLGLAFVILGFLAWYIFMLGREERDLMQARRAKEARLFSLSTGLLHFAFLQ------ 240

Query: 97  PGLLLFMMFGI-GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
             L+  ++ GI         P++    + P    +      +  +    LV F+     +
Sbjct: 241 -ILIGALVAGIDAGRSFTDWPLIGGQVLPPDATALDPM--WRNFFESPGLVQFIHRC--V 295

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
             V     I +           SA+P +    AF  +   L + ++      V    W  
Sbjct: 296 GYVLFAFGIFVWRR-----GSSSAHPQT--RFAFNAMFAALSLQVVVGILTVVYGAPWQI 348

Query: 216 HQWYS 220
             ++ 
Sbjct: 349 AIFHQ 353


>gi|320542180|ref|NP_001188627.1| paralytic, isoform AF [Drosophila melanogaster]
 gi|318069417|gb|ADV37709.1| paralytic, isoform AF [Drosophila melanogaster]
          Length = 2110

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1284 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1343

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1344 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1402

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1403 VQAIPSIFNVLLVCLIFWLIF 1423


>gi|320542148|ref|NP_001188611.1| paralytic, isoform P [Drosophila melanogaster]
 gi|318069401|gb|ADV37693.1| paralytic, isoform P [Drosophila melanogaster]
          Length = 2121

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1295 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1354

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1355 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1413

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1414 VQAIPSIFNVLLVCLIFWLIF 1434


>gi|261207182|ref|ZP_05921871.1| predicted protein [Enterococcus faecium TC 6]
 gi|289565303|ref|ZP_06445754.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294616133|ref|ZP_06695938.1| hypothetical protein EfmE1636_2202 [Enterococcus faecium E1636]
 gi|294619511|ref|ZP_06698951.1| hypothetical protein EfmE1679_2293 [Enterococcus faecium E1679]
 gi|260078810|gb|EEW66512.1| predicted protein [Enterococcus faecium TC 6]
 gi|289162959|gb|EFD10808.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291591010|gb|EFF22714.1| hypothetical protein EfmE1636_2202 [Enterococcus faecium E1636]
 gi|291594242|gb|EFF25676.1| hypothetical protein EfmE1679_2293 [Enterococcus faecium E1679]
          Length = 595

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 12/196 (6%)

Query: 33  EASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           + S+F  ++   I++  F F   IY     L     +   +      + +F    L L  
Sbjct: 100 DGSIFYFLVYFSIFVYSFLFLQSIYLSMPKLETFFTAQNTQAFSSRKYFLFFTVFLVLCW 159

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN------L 145
              ++      ++    S + Q +  + +++  P    + L +        +       L
Sbjct: 160 LPYLLALYPGVVLPDSLSSVAQSMGDVPISNHHPVLFTL-LVKLFVHDLPTDTINHGVFL 218

Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISAN----PHSILYHAFFTVRKVLIMILL 201
            +  ++ +    +   +   L  N       IS            +A    +  L  I  
Sbjct: 219 FSIFQTLITASAISYSLCWLLKRNIHFFPVLISLCYFAFAPVFPIYALNMQKDTLFSIAC 278

Query: 202 FIATLTVLDIGWSYHQ 217
           F+ +L V D  +   +
Sbjct: 279 FLFSLAVFDFIFQREK 294


>gi|30584215|gb|AAP36356.1| Homo sapiens tubulin, beta, 4 [synthetic construct]
 gi|60653943|gb|AAX29664.1| tubulin beta 4 [synthetic construct]
          Length = 798

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS---- 88
           +    SS+L+ L +L         S+   L         R    ++ I       S    
Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFI 180

Query: 89  ------LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
                      LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 181 AYYDHVAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312


>gi|311245144|ref|XP_003121712.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1-like [Sus scrofa]
          Length = 1688

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 302 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 361

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 362 G-RASDILSFAHKY 374


>gi|320542166|ref|NP_001188620.1| paralytic, isoform Y [Drosophila melanogaster]
 gi|318069410|gb|ADV37702.1| paralytic, isoform Y [Drosophila melanogaster]
          Length = 2138

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1312 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1371

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1372 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1430

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1431 VQAIPSIFNVLLVCLIFWLIF 1451


>gi|254501320|ref|ZP_05113471.1| Integral membrane protein [Labrenzia alexandrii DFL-11]
 gi|222437391|gb|EEE44070.1| Integral membrane protein [Labrenzia alexandrii DFL-11]
          Length = 505

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 11/202 (5%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           + S    +LA + Y   F       + +   V    AT      ++        L+++A 
Sbjct: 55  DPSAALILLAGVYYGAIFGGSTSSILINAPGVASTVATSFDGYPLARQGKAGKALTVAAI 114

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
                G +  ++  I +  +  + +L  +    +        G+  I +       +K+ 
Sbjct: 115 SSFAGGSIGAVLLMIFAPALATVALLFHSAEYFALM----VVGLSAIAAFAGTGQVIKAL 170

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
           + + ++G I+        F M  F        L   F  +   + M  L  A   VLD  
Sbjct: 171 L-MTILGVIMATVGEGALFNMPRFTMGMMD--LQSGFGFITLAMAMFALPEALYLVLDPN 227

Query: 213 WSYHQW----YSKLKMSKQEIK 230
            S  +        L+++K+E K
Sbjct: 228 RSKTESGSNEIKDLRITKEEAK 249


>gi|195351464|ref|XP_002042254.1| GM13396 [Drosophila sechellia]
 gi|194124097|gb|EDW46140.1| GM13396 [Drosophila sechellia]
          Length = 1674

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1294 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1353

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1354 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1412

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1413 VQAIPSIFNVLLVCLIFWLIF 1433


>gi|7020006|dbj|BAA90958.1| unnamed protein product [Homo sapiens]
          Length = 575

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|320542128|ref|NP_001188601.1| paralytic, isoform F [Drosophila melanogaster]
 gi|318069391|gb|ADV37683.1| paralytic, isoform F [Drosophila melanogaster]
          Length = 2108

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1282 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1341

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1342 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1400

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1401 VQAIPSIFNVLLVCLIFWLIF 1421


>gi|311113604|ref|YP_003984826.1| amino acid transporter [Rothia dentocariosa ATCC 17931]
 gi|310945098|gb|ADP41392.1| amino acid transporter [Rothia dentocariosa ATCC 17931]
          Length = 528

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 25/191 (13%)

Query: 25  EGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
           EG    S  A++ + +   L+YLL       ++ TS   + L ++  ++         +L
Sbjct: 271 EGEHTTSGHAAVGTILTVVLLYLLISVGTLAFAGTSSEGLGLGNSDNQENIFAVLSGPVL 330

Query: 85  THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
             L +  S  V+   L  +     S     + +     + P F  +S +           
Sbjct: 331 GSLGIIMSFAVLISALASLQSTAVSPARTLLAMGYYKALGPKFASISPKYQSPS------ 384

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
                          TI +  +   ++ ++ FIS +        + T+  + +M+ L+  
Sbjct: 385 -------------YATIASCLIATLFYVLMRFISTSV------LWDTISALSLMVCLYYG 425

Query: 205 TLTVLDIGWSY 215
                 + +  
Sbjct: 426 VTAFACVWYFR 436


>gi|57114170|ref|NP_001009152.1| melanocyte-stimulating hormone receptor [Pan troglodytes]
 gi|30420766|gb|AAP30960.1| melanocortin-1 receptor [Pan troglodytes]
          Length = 317

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLH---VLLASATQRKLEDISHIVFLLTHLSL 89
           +    SS+L+ L +L         S+   L    ++     +R +  I     L + L +
Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAIAAIWVASVLFSTLFI 180

Query: 90  S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
           +          LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 181 AYCDHTAVLLCLVVFFLAVLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIXLCPEHPTCGCIFKNFNLFLALIIC 289

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312


>gi|403446|gb|AAB59194.1| sodium channel alpha subunit [Drosophila melanogaster]
          Length = 2121

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1295 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1354

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1355 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1413

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1414 VQAIPSIFNVLLVCLIFWLIF 1434


>gi|403445|gb|AAB59193.1| sodium channel alpha subunit [Drosophila melanogaster]
          Length = 2118

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1292 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1351

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1352 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1410

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1411 VQAIPSIFNVLLVCLIFWLIF 1431


>gi|329121659|ref|ZP_08250279.1| Na+/H+ antiporter [Dialister micraerophilus DSM 19965]
 gi|327468519|gb|EGF13999.1| Na+/H+ antiporter [Dialister micraerophilus DSM 19965]
          Length = 452

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 18/202 (8%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA------SATQRKLEDISHIVFLLTHL 87
             L   +L   +      +  I +V    + +++      +A    + +   I    T +
Sbjct: 74  VPLIIFMLIGTLVASLIAAGTIPTVVVYGYKIISAKYLPVTAFIICIAEGFTIGSSFTTI 133

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
           S     L+  G +  +     +  I        N++ P     +L   I  I    +L N
Sbjct: 134 STMGVVLIALGRISEIPDAYIAGAIVSGAFFA-NNMSPLADVPNLCSAIGEIPLSKHLRN 192

Query: 148 FMKSFVKIILVGTIITISLTEN-----------YFTMLDFISANPHSILYHAFFTVRKVL 196
             KS + ++++  II + L  +             ++  F   +P +++      +    
Sbjct: 193 LAKSTLPVLVISIIIYVILGGSANEVSGGIAETIQSLNKFFFVSPITLVPILLIFIASWR 252

Query: 197 IMILLFIATLTVLDIGWSYHQW 218
            +  +    + ++     Y  +
Sbjct: 253 KLPAIASLLIGIISALIIYVFF 274


>gi|29377005|ref|NP_816159.1| hypothetical protein EF2516 [Enterococcus faecalis V583]
 gi|29344471|gb|AAO82229.1| membrane protein, putative [Enterococcus faecalis V583]
          Length = 681

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             +    + +E    +   L +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|320542170|ref|NP_001188622.1| paralytic, isoform AA [Drosophila melanogaster]
 gi|320542174|ref|NP_001188624.1| paralytic, isoform AC [Drosophila melanogaster]
 gi|318069412|gb|ADV37704.1| paralytic, isoform AA [Drosophila melanogaster]
 gi|318069414|gb|ADV37706.1| paralytic, isoform AC [Drosophila melanogaster]
          Length = 2084

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1258 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1317

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1318 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1376

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1377 VQAIPSIFNVLLVCLIFWLIF 1397


>gi|300117538|ref|ZP_07055325.1| branched-chain amino acid ABC transporter, permease [Bacillus
           cereus SJ1]
 gi|298725073|gb|EFI65728.1| branched-chain amino acid ABC transporter, permease [Bacillus
           cereus SJ1]
          Length = 286

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 71/184 (38%), Gaps = 11/184 (5%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +   S++  L+ +L F   G+++  +   V L + T   +  ++  + +   L     R
Sbjct: 21  LASGLSLIFGLMSVLNFAHGGLFAWGAFTGVWLFNMTGSYVLALTGAIAMGMFLGFILER 80

Query: 94  LVIPGL----LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
            +I  +    +  ++  +G  L+    +       P   ++ L   ++  ++   ++  +
Sbjct: 81  FLIRPVYGNHVRQLLVTLGGMLVLSECIKVFWGPNPIGAKLPL--WLQGSFTFGGVI-LI 137

Query: 150 KSFVKIILVGTIITISLTENY----FTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
           K  + +IL+G II ++L          ++         ++      V+ +   + L  A 
Sbjct: 138 KYRLFVILIGIIIYVALLVLLKKTKIGLMIRAGVMDKEMVQALGINVKAIFSFVFLLGAG 197

Query: 206 LTVL 209
           +  L
Sbjct: 198 MAAL 201


>gi|210629781|ref|ZP_03296125.1| hypothetical protein COLSTE_00008 [Collinsella stercoris DSM 13279]
 gi|210160808|gb|EEA91779.1| hypothetical protein COLSTE_00008 [Collinsella stercoris DSM 13279]
          Length = 438

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 18/164 (10%)

Query: 63  HVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNH 122
             L    T   +   +  + +   L L A   V+P ++ F++ GIG  ++  + V     
Sbjct: 10  QSLFVGVTLFSMFFGAGNLIIPPLLGLQAGEAVVPTMVGFLVTGIGLPVLGIVAVGLAGT 69

Query: 123 VKPSFKRVSLREGIKRIY----------------SINNLVNFMKSFVKIILVGTIITISL 166
           ++    RV        ++                + +      +  +   +   +  +  
Sbjct: 70  IRDLAARVHPL--FASVFVAAVYLAIGPCLAIPRTSSTSFEMFEPLLPACVSLEVARLVF 127

Query: 167 TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           +  +F +   ++ +P ++           LI++L+F+    + D
Sbjct: 128 SVAFFAVAYLLAMHPSALTRLLGRITGPALIVLLVFVIGAALFD 171


>gi|320542214|ref|NP_001188644.1| paralytic, isoform AW [Drosophila melanogaster]
 gi|318069434|gb|ADV37726.1| paralytic, isoform AW [Drosophila melanogaster]
          Length = 2062

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1236 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1295

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1296 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1354

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1355 VQAIPSIFNVLLVCLIFWLIF 1375


>gi|320542132|ref|NP_001188603.1| paralytic, isoform H [Drosophila melanogaster]
 gi|320542190|ref|NP_001188632.1| paralytic, isoform AK [Drosophila melanogaster]
 gi|318069393|gb|ADV37685.1| paralytic, isoform H [Drosophila melanogaster]
 gi|318069422|gb|ADV37714.1| paralytic, isoform AK [Drosophila melanogaster]
          Length = 2097

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1271 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1330

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1331 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1389

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1390 VQAIPSIFNVLLVCLIFWLIF 1410


>gi|255525494|ref|ZP_05392431.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium
           carboxidivorans P7]
 gi|255510859|gb|EET87162.1| NADH/Ubiquinone/plastoquinone (complex I) [Clostridium
           carboxidivorans P7]
          Length = 297

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
             S+  + +   ++ LF  S    ++++++ ++  S     L     I F    LSL A+
Sbjct: 97  SISINFAKIYYFLFNLFVLSMIAVAISNNIILMWISLEATTLSTAFLIGFNRHKLSLEAA 156

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
              I    + ++ G+   ++        +   PS K ++    +K    +N      KS 
Sbjct: 157 WKYIIICSIGIVLGLIGIIL-----FIYSSGDPSNKVLNWTYLVKNYSLLN------KSI 205

Query: 153 VKI----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           VK     I VG      L   +  + D  S  P  I       +  + + ++L    +  
Sbjct: 206 VKFGFCFIFVGIATKAGLAPMHTWLPDAHSEAPSPISAMMSGVLLNLALYVVLRFYIIVK 265

Query: 209 LDIGWSYHQWY 219
           L  G    ++ 
Sbjct: 266 LISGLEKMKYL 276


>gi|213024081|ref|ZP_03338528.1| flagellar biosynthesis protein FlhB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 50

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 337 VFYKAVAQLIYKIYHKK 353
             Y AVA+++  ++  K
Sbjct: 2   QLYAAVAEVLAWVWQLK 18


>gi|92109463|ref|YP_571751.1| hypothetical protein Nham_4322 [Nitrobacter hamburgensis X14]
 gi|92109467|ref|YP_571755.1| hypothetical protein Nham_4328 [Nitrobacter hamburgensis X14]
 gi|91802545|gb|ABE64919.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
 gi|91802549|gb|ABE64923.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 253

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 12/197 (6%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +    +LA    LL+ +             L A++    +            L L A  
Sbjct: 57  LATALQVLAAFTALLYAWRLLAVREVFIWARLQATSAWPLVWLAWLHGMSGEALVLVALA 116

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE-----------GIKRIYSI 142
           + IP  +L ++    S  +    +     + P++ R++                   +++
Sbjct: 117 VTIPAAVLMILGCSLSRRLGGAYLGLRGRIGPAWPRLTGVFVVALLAAMAAPPFPGFFAM 176

Query: 143 NNLVNFMKS-FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
             ++  + +    ++L   ++        +    F    P ++           L ++L 
Sbjct: 177 LAVLQQISAGLAAVVLAVWLLWSWAAAVLWQHALFGDEWPRAVGTVDLSRSGTALWLMLA 236

Query: 202 FIATLTVLDIGWSYHQW 218
            +A +     GWS+   
Sbjct: 237 AVAAVLGSIGGWSWWMH 253


>gi|288929947|ref|ZP_06423789.1| HAE1 efflux family protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328766|gb|EFC67355.1| HAE1 efflux family protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 1068

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 32   REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK-LEDISHIVFLLTHLSLS 90
            +  +       CL+++    S    S    L V+L+           + +      + + 
Sbjct: 868  QSNTTALIFALCLVFVYLILSAQYESYLLPLSVILSLPFGLAGAFIFTQLFGHQNDIYMQ 927

Query: 91   ASRLVIPGLLLFMMFGIGSYLIQ---RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
             + +++ GLL      I  + ++       +  + +  +  R+                 
Sbjct: 928  IALIMLIGLLAKNAILIVEFALERRRTGMAIKYSAILGAASRLRP--------------- 972

Query: 148  FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
                   I++ G  + I L    F     +  N +  L  A   V  +LI ++L I  + 
Sbjct: 973  -------ILMTGLAMVIGLLPMMFA--SGVGKNGNQTLGAA--AVGGMLIGMMLQIFVVP 1021

Query: 208  VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
             L + + Y     + K +  E  DE      N  +KN  K  AR     K ++A
Sbjct: 1022 ALFVIFQYL----QEKFTPLEFGDEE-----NREVKNELKQYARQMAIEKDVKA 1066


>gi|320542126|ref|NP_001188600.1| paralytic, isoform E [Drosophila melanogaster]
 gi|318069390|gb|ADV37682.1| paralytic, isoform E [Drosophila melanogaster]
          Length = 2108

 Score = 37.1 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1282 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1341

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1342 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1400

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1401 VQAIPSIFNVLLVCLIFWLIF 1421


>gi|167535051|ref|XP_001749200.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772353|gb|EDQ86006.1| predicted protein [Monosiga brevicollis MX1]
          Length = 551

 Score = 37.1 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 27  NAPISREASLFSSILACLIYLLFFFSPGIY-SVTSDLHVLLASATQRKLEDISHIVFLLT 85
           + P S+++S   ++ +         S  +  +    +  L        L     + F+ T
Sbjct: 363 DVPHSKDSSTLVALFSVFNTCGRLLSGYLSDAFAHRISRLGFLVMGSLLMGAVQVYFMFT 422

Query: 86  HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135
            +      +V+ G+     F +   L+     +         + ++   G
Sbjct: 423 SIDGMYGAVVLLGIAYGSFFCLVPALVSEAFGMATFGATFGLQGLAPAAG 472


>gi|320542172|ref|NP_001188623.1| paralytic, isoform AB [Drosophila melanogaster]
 gi|318069413|gb|ADV37705.1| paralytic, isoform AB [Drosophila melanogaster]
          Length = 2086

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1260 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1319

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1320 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1378

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1379 VQAIPSIFNVLLVCLIFWLIF 1399


>gi|311244743|ref|XP_003121563.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 7 [Sus scrofa]
          Length = 1866

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 22/99 (22%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
              A                   L   L KQ      +P
Sbjct: 319 GRAA------------------DLLAYLHKQTEEGGNLP 339


>gi|229496978|ref|ZP_04390683.1| cytochrome D ubiquinol oxidase, subunit II [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316080|gb|EEN82008.1| cytochrome D ubiquinol oxidase, subunit II [Porphyromonas
           endodontalis ATCC 35406]
          Length = 387

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 30/191 (15%)

Query: 43  CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
            LI+++FF +   + VT          T    ED +  V  L +     + L +P +L+ 
Sbjct: 224 ALIFVVFFVAYVAFLVT----------TTGYTEDPTTGVISLENYKYLHNFLAMPIVLII 273

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII 162
            + G+   L      + L   KP+F++     GI         V  +   + ++ +  + 
Sbjct: 274 FLIGVVLVLAG----IALTLFKPAFRK-----GI--------WVEGVGVVLSVLGLLLVA 316

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
             + T  Y ++ D  S+        + +T++ + I+ LL    L  +   W   +   K 
Sbjct: 317 GWNNTAYYPSLFDMQSSLTLRNSSSSPYTLQAMSIVSLLIPFVLAYIFYAW---RSIDKK 373

Query: 223 KMSKQEIKDEI 233
           KM+++EI+D  
Sbjct: 374 KMTRKEIEDNH 384


>gi|403442|gb|AAB59190.1| sodium channel alpha subunit [Drosophila melanogaster]
          Length = 2110

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1284 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1343

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1344 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1402

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1403 VQAIPSIFNVLLVCLIFWLIF 1423


>gi|116495769|ref|YP_807503.1| hypothetical protein LSEI_2317 [Lactobacillus casei ATCC 334]
 gi|116105919|gb|ABJ71061.1| Predicted membrane protein [Lactobacillus casei ATCC 334]
          Length = 279

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 46  YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
           +L   +   + +V  ++   L       +   +  +     L  L      +++ G L  
Sbjct: 81  FLYALYGALLAAVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 140

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156
               + + LI    V  +    P+  R  L   +K++ +        +L+  + +    I
Sbjct: 141 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 200

Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214
            +  ++ I +          +    H+ +    A   V  +   +   +  +  + +   
Sbjct: 201 ALSVVVWIIIMNRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 260

Query: 215 YHQWYSKLK--MSK 226
            + ++ + +  M++
Sbjct: 261 TYWFWRQNRQVMTR 274


>gi|320542186|ref|NP_001188630.1| paralytic, isoform AI [Drosophila melanogaster]
 gi|318069420|gb|ADV37712.1| paralytic, isoform AI [Drosophila melanogaster]
          Length = 2086

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1260 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1319

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1320 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1378

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1379 VQAIPSIFNVLLVCLIFWLIF 1399


>gi|320542182|ref|NP_001188628.1| paralytic, isoform AG [Drosophila melanogaster]
 gi|318069418|gb|ADV37710.1| paralytic, isoform AG [Drosophila melanogaster]
          Length = 2089

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1263 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1322

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1323 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1381

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1382 VQAIPSIFNVLLVCLIFWLIF 1402


>gi|320542168|ref|NP_001188621.1| paralytic, isoform Z [Drosophila melanogaster]
 gi|318069411|gb|ADV37703.1| paralytic, isoform Z [Drosophila melanogaster]
          Length = 2089

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1263 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1322

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1323 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1381

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1382 VQAIPSIFNVLLVCLIFWLIF 1402


>gi|320542164|ref|NP_001188619.1| paralytic, isoform X [Drosophila melanogaster]
 gi|318069409|gb|ADV37701.1| paralytic, isoform X [Drosophila melanogaster]
          Length = 2125

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1299 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1358

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1359 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1417

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1418 VQAIPSIFNVLLVCLIFWLIF 1438


>gi|320542160|ref|NP_001188617.1| paralytic, isoform V [Drosophila melanogaster]
 gi|318069407|gb|ADV37699.1| paralytic, isoform V [Drosophila melanogaster]
          Length = 2097

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1271 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1330

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1331 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1389

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1390 VQAIPSIFNVLLVCLIFWLIF 1410


>gi|320542154|ref|NP_001188614.1| paralytic, isoform S [Drosophila melanogaster]
 gi|318069404|gb|ADV37696.1| paralytic, isoform S [Drosophila melanogaster]
          Length = 2100

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413


>gi|403443|gb|AAB59191.1| sodium channel alpha subunit [Drosophila melanogaster]
          Length = 2123

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1297 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYLT 1356

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1357 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1415

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1416 VQAIPSIFNVLLVCLIFWLIF 1436


>gi|257885810|ref|ZP_05665463.1| predicted protein [Enterococcus faecium 1,231,501]
 gi|257821666|gb|EEV48796.1| predicted protein [Enterococcus faecium 1,231,501]
          Length = 595

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 12/196 (6%)

Query: 33  EASLFSSILACLIYLL-FFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           + S+F  ++   I++  F F   IY     L     +   +      + +F    L L  
Sbjct: 100 DGSIFYFLVYFSIFVYSFLFLQSIYLSMPKLETFFTAQNTQAFSSRKYFLFFTVFLVLCW 159

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN------L 145
              ++      ++    S + Q +  + +++  P    + L +        +       L
Sbjct: 160 LPYLLALYPGVVLPDSLSSVAQSMGDVPISNHHPVLFTL-LVKLFVHDLPTDTINHGVFL 218

Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISAN----PHSILYHAFFTVRKVLIMILL 201
            +  ++ +    +   +   L  N       IS            +A    +  L  I  
Sbjct: 219 FSIFQTLITASAISYSLCWLLKRNIHFFPVLISLCYFAFAPVFPIYALNMQKDTLFSIAC 278

Query: 202 FIATLTVLDIGWSYHQ 217
           F+ +L V D  +   +
Sbjct: 279 FLFSLAVFDFIFQREK 294


>gi|46447479|ref|YP_008844.1| putative thiol-disulfide interchange protein [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401120|emb|CAF24569.1| putative thiol-disulfide interchange protein [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 747

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 62/206 (30%), Gaps = 23/206 (11%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI-- 96
             +  L  +LF F+  ++ +        + A Q + E  +     +           +  
Sbjct: 408 IFVVILASVLFIFALSLFGLFEWGMFFASWAGQTQAEKATQWSGYMGSFLSGVLATAVAT 467

Query: 97  ----PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV---SLREGIKRIYSINNLVNFM 149
               P L   + F +   + Q + +  L  +   F  +   S    ++ +      +   
Sbjct: 468 PCTGPFLGSAVGFAVTLPVFQSLLIFTLLGLGMCFPYLLLASFPAFLRFMPKPGPWMETF 527

Query: 150 KSFVKIILVGTIITISL----TENYFTMLDFISANPHSILYHAFFTVRK----------V 195
           K  +  +L+ T++ +        N F+++  I+      +    +              +
Sbjct: 528 KELMGFVLLITVLWLMWVFSAQTNTFSLICLIAGFLSFAIGAWIYGKGSHPLISSKKRII 587

Query: 196 LIMILLFIATLTVLDIGWSYHQWYSK 221
             +  LF   + +  I      W   
Sbjct: 588 AYVTALFFILMGIEAIILPKDSWNDS 613


>gi|320542216|ref|NP_001188645.1| paralytic, isoform AX [Drosophila melanogaster]
 gi|318069435|gb|ADV37727.1| paralytic, isoform AX [Drosophila melanogaster]
          Length = 2099

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1273 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1332

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1333 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1391

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1392 VQAIPSIFNVLLVCLIFWLIF 1412


>gi|320542156|ref|NP_001188615.1| paralytic, isoform T [Drosophila melanogaster]
 gi|318069405|gb|ADV37697.1| paralytic, isoform T [Drosophila melanogaster]
          Length = 2110

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1284 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1343

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1344 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1402

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1403 VQAIPSIFNVLLVCLIFWLIF 1423


>gi|320542144|ref|NP_001188609.1| paralytic, isoform N [Drosophila melanogaster]
 gi|318069399|gb|ADV37691.1| paralytic, isoform N [Drosophila melanogaster]
          Length = 2100

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413


>gi|303256931|ref|ZP_07342945.1| ABC transporter, permease protein [Burkholderiales bacterium
           1_1_47]
 gi|330998818|ref|ZP_08322545.1| branched-chain amino acid ABC transporter, permease protein
           [Parasutterella excrementihominis YIT 11859]
 gi|302860422|gb|EFL83499.1| ABC transporter, permease protein [Burkholderiales bacterium
           1_1_47]
 gi|329576032|gb|EGG57551.1| branched-chain amino acid ABC transporter, permease protein
           [Parasutterella excrementihominis YIT 11859]
          Length = 298

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 41  LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS-------- 92
           +  L   L F    I  ++ +    L +A    L D  H V+    ++L A         
Sbjct: 17  IMALGVFLTFRVLDIADLSVEGTFPLGAAVAATLIDAGHSVWFAMLIALIAGCIGGTVTA 76

Query: 93  ----RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV-N 147
               +L IP LL  ++  IG  L     ++      P  +  ++    + ++ ++++V  
Sbjct: 77  LLTTKLKIPALLSGILTMIG--LYSVNLMIMGKANVPLLRAETVFTLTEDLFGVSSVVAT 134

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
            +   +   +VG I+         T +     NP         T   V++ +L+    + 
Sbjct: 135 LIVGLIATTVVGVIMYWFFGTVLGTAIRATGCNPQMARAQGINTNVMVILGLLISNGLVA 194

Query: 208 V 208
           +
Sbjct: 195 L 195


>gi|170756738|ref|YP_001781555.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           B1 str. Okra]
 gi|169121950|gb|ACA45786.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           B1 str. Okra]
          Length = 465

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           PG++   + G+ +       +          ++   FK++    G+ + +        +K
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S   + ++G +IT  L       +  ++     ++       +   I++ + I  ++  D
Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313

Query: 211 I 211
            
Sbjct: 314 F 314


>gi|149057062|gb|EDM08385.1| rCG24726, isoform CRA_b [Rattus norvegicus]
          Length = 911

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 329 G-RASDILSFAHKY 341


>gi|119597813|gb|EAW77407.1| transient receptor potential cation channel, subfamily M, member 7,
           isoform CRA_c [Homo sapiens]
          Length = 1864

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|114657038|ref|XP_510400.2| PREDICTED: transient receptor potential cation channel subfamily M
           member 7 [Pan troglodytes]
          Length = 1865

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|90580545|ref|ZP_01236350.1| virulence factor MviN [Vibrio angustum S14]
 gi|90438203|gb|EAS63389.1| virulence factor MviN [Photobacterium angustum S14]
          Length = 505

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 26  GNAPISREA-SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL 84
           G+   +RE  +  +  L  ++ L+  F        + L                   F L
Sbjct: 63  GDVDRTRELIAKAAGTLGGIVTLVTLFGVLGSGAVTALFG-FGWFWDWLHGGADAEKFEL 121

Query: 85  THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR 133
             L L   ++  P L       +   ++  +    ++   P F  +S+ 
Sbjct: 122 ASLLL---KITFPYLWFITFVALSGAILNTLGKFAISSFTPVFLNISII 167


>gi|320542198|ref|NP_001188636.1| paralytic, isoform AO [Drosophila melanogaster]
 gi|318069426|gb|ADV37718.1| paralytic, isoform AO [Drosophila melanogaster]
          Length = 2113

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1287 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1346

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1347 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1405

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1406 VQAIPSIFNVLLVCLIFWLIF 1426


>gi|320542140|ref|NP_001188607.1| paralytic, isoform L [Drosophila melanogaster]
 gi|318069397|gb|ADV37689.1| paralytic, isoform L [Drosophila melanogaster]
          Length = 2087

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1261 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1320

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1321 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1379

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1380 VQAIPSIFNVLLVCLIFWLIF 1400


>gi|290893640|ref|ZP_06556622.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL J2-071]
 gi|290556842|gb|EFD90374.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL J2-071]
          Length = 650

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 16/173 (9%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
             FS + A   +LL             L  ++     R+L   +   F+L  + L     
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAVLSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 95  VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149
           ++   +    ++  +   ++      +   + P   +++L         I+S+N LV   
Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                 IL+GT +   L   +  +          IL   F  +    + IL F
Sbjct: 286 -----FILLGTQLPQILMTIWQDVNIQKGMLFVYILGITFLLLGLRFLWILFF 333


>gi|227431358|ref|ZP_03913410.1| membrane protein, toxin regulator [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352868|gb|EEJ43042.1| membrane protein, toxin regulator [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 352

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 14/206 (6%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
            LF +++A  I L+      +  + + +   +A AT+     +   + ++    + +   
Sbjct: 142 PLFVAVIAGGIGLMTLQPISV--LQTWIGDGVAYATELTPLVMGAALGVIFAFLIVSPLS 199

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
            +   +   + G+GS        +    +      V+   G    +  +  +      VK
Sbjct: 200 SVGIAMAISLAGVGSGAANAGITVASFTLALMGASVNPIGGTLVHFVGSPKIQMANMLVK 259

Query: 155 ----------IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMILLF 202
                       ++G + T+   +       F  +     L     + + +  +  ILL 
Sbjct: 260 PKLFIPTSIGAAIMGAVATMLNIKGTPFSAGFGFSGLVGPLTAWSESDKSLVSIFSILLV 319

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQE 228
              L V+        + +KLKM K E
Sbjct: 320 FVILPVIIATVLKWLFMTKLKMIKAE 345


>gi|196231705|ref|ZP_03130562.1| hypothetical protein CfE428DRAFT_3727 [Chthoniobacter flavus
           Ellin428]
 gi|196224177|gb|EDY18690.1| hypothetical protein CfE428DRAFT_3727 [Chthoniobacter flavus
           Ellin428]
          Length = 190

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 18/172 (10%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
            + L   + LLFF     +     +  ++       L        L+  L L     +I 
Sbjct: 22  VAALGVGLVLLFFGRKLFWLFVGAVGFVVGLEAATVLFPHQPDWALIAGLILGLIGAIIA 81

Query: 98  GLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIIL 157
             +  M  GI  +L     ++                   R + + +  +   SF+   +
Sbjct: 82  IFVQKMAIGIAGFLSGGYFLMTAL----------------RSWELQSPESSWVSFLIGGV 125

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
           +G ++   +    + ++   S +   ++ H F    +V  +  L +A   +L
Sbjct: 126 IGALLMYVVFN--WALIILSSISGAHLIIHPFALSHQVASVAFLALALFGIL 175


>gi|13562153|gb|AAK19738.2|AF346629_1 channel-kinase 1 [Homo sapiens]
          Length = 1864

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|307269903|ref|ZP_07551229.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248]
 gi|306513693|gb|EFM82299.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248]
          Length = 681

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             +    + +E    +   L +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|256958176|ref|ZP_05562347.1| predicted protein [Enterococcus faecalis DS5]
 gi|256948672|gb|EEU65304.1| predicted protein [Enterococcus faecalis DS5]
 gi|315036210|gb|EFT48142.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0027]
          Length = 681

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             +    + +E    +   L +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFSQDGAKTMEKAFGVGVGLVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWINKLIDQAFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|148612863|ref|NP_060142.3| transient receptor potential cation channel subfamily M member 7
           [Homo sapiens]
 gi|56404941|sp|Q96QT4|TRPM7_HUMAN RecName: Full=Transient receptor potential cation channel subfamily
           M member 7; AltName: Full=Channel-kinase 1; AltName:
           Full=Long transient receptor potential channel 7;
           Short=LTrpC-7; Short=LTrpC7
 gi|13959785|gb|AAK44211.1| LTRPC7 [Homo sapiens]
 gi|119597811|gb|EAW77405.1| transient receptor potential cation channel, subfamily M, member 7,
           isoform CRA_a [Homo sapiens]
 gi|119597814|gb|EAW77408.1| transient receptor potential cation channel, subfamily M, member 7,
           isoform CRA_a [Homo sapiens]
          Length = 1865

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|332235549|ref|XP_003266967.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 7 [Nomascus leucogenys]
          Length = 1866

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|320542162|ref|NP_001188618.1| paralytic, isoform W [Drosophila melanogaster]
 gi|318069408|gb|ADV37700.1| paralytic, isoform W [Drosophila melanogaster]
          Length = 2102

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1276 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1335

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1336 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1394

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1395 VQAIPSIFNVLLVCLIFWLIF 1415


>gi|320542138|ref|NP_001188606.1| paralytic, isoform K [Drosophila melanogaster]
 gi|318069396|gb|ADV37688.1| paralytic, isoform K [Drosophila melanogaster]
          Length = 2076

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1250 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1309

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1310 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1368

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1369 VQAIPSIFNVLLVCLIFWLIF 1389


>gi|320542130|ref|NP_001188602.1| paralytic, isoform G [Drosophila melanogaster]
 gi|318069392|gb|ADV37684.1| paralytic, isoform G [Drosophila melanogaster]
          Length = 2087

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1261 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1320

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1321 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1379

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1380 VQAIPSIFNVLLVCLIFWLIF 1400


>gi|227432947|ref|ZP_03914889.1| ABC superfamily ATP binding cassette transporter permease
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351293|gb|EEJ41577.1| ABC superfamily ATP binding cassette transporter permease
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 387

 Score = 36.7 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 5/166 (3%)

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLN 119
           + + L    Q++ + I  +    +   L A  +    +L F+  G       + +    N
Sbjct: 98  IFMFLLIYFQQQRQQIDKLRRKTSWRVLPALTVAFAIILAFVTSGFFWAINYLFQTASFN 157

Query: 120 LNHVKPSFKRVSLREGIKRIYSINNLVNF-MKSFVKIILVGTIITISLTENYFTMLDFIS 178
           L      F   +       IYS  ++    + S   + ++G ++T  +T +      +  
Sbjct: 158 LFTSIALFTMFNGIINFLMIYSALSISTLFITSIFVMTIIGGVLTAMVTNSSRMWWQYNL 217

Query: 179 ANPHSILYHAFFTVRKVLIMI-LLFIATLTVLDIGWSYH-QWYSKL 222
           +   +      +     LI+  L+++A +  L +      +   +L
Sbjct: 218 SFLGTDNALDSWQFNATLILARLIWLALVDYLFVPLQKTLRHNRRL 263


>gi|163839688|ref|YP_001624093.1| multidrug resistance efflux protein [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953164|gb|ABY22679.1| multidrug resistance efflux protein [Renibacterium salmoninarum
           ATCC 33209]
          Length = 510

 Score = 36.7 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 53/188 (28%), Gaps = 22/188 (11%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           ++A    L FF +  + S  S +  +     QR+    +  ++       +A   ++ G 
Sbjct: 114 LIAARALLGFFGAMLMPSTLSLIRNIFLDPRQRR---TAIAIWAAAFSGGAALGPIVGGF 170

Query: 100 LL---------FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           LL          +   +   L+   P+       P    +     +    ++  LV  +K
Sbjct: 171 LLEHFWWGSVFLLAVPVLIPLLIFGPIFITESRDPKPAPIDPLSIVLSFAAMVPLVYGIK 230

Query: 151 ----------SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
                     + +   +    + + +          +              +  +L +  
Sbjct: 231 TFASEGLSATAVLAAAVGLFCMWLFIRRQLRQRTPMLEVQLFRNPVFTGGVLANLLSVFS 290

Query: 201 LFIATLTV 208
           L      +
Sbjct: 291 LVGFLFFI 298


>gi|320542136|ref|NP_001188605.1| paralytic, isoform J [Drosophila melanogaster]
 gi|318069395|gb|ADV37687.1| paralytic, isoform J [Drosophila melanogaster]
          Length = 2100

 Score = 36.7 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413


>gi|297696636|ref|XP_002825490.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 7-like [Pongo abelii]
          Length = 1866

 Score = 36.7 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|320542150|ref|NP_001188612.1| paralytic, isoform Q [Drosophila melanogaster]
 gi|318069402|gb|ADV37694.1| paralytic, isoform Q [Drosophila melanogaster]
          Length = 2076

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1250 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1309

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1310 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1368

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1369 VQAIPSIFNVLLVCLIFWLIF 1389


>gi|320542142|ref|NP_001188608.1| paralytic, isoform M [Drosophila melanogaster]
 gi|318069398|gb|ADV37690.1| paralytic, isoform M [Drosophila melanogaster]
          Length = 2100

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1274 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1333

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1334 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1392

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1393 VQAIPSIFNVLLVCLIFWLIF 1413


>gi|317504664|ref|ZP_07962630.1| NCS2 family nucleobase:cation symporter-2 [Prevotella salivae DSM
           15606]
 gi|315664235|gb|EFV03936.1| NCS2 family nucleobase:cation symporter-2 [Prevotella salivae DSM
           15606]
          Length = 406

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 68  SATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF 127
           S T   L  +S + F+++ L     + ++  L   ++ G    LI     L+L+      
Sbjct: 83  SGTLSGLTAVSVVYFVMSALVKWQGKRLLNRLFPPVVIGPVIILIG----LSLSGTAVDM 138

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKII-LVGTIITISLTENYFTMLDFIS--ANPHSI 184
            + +       +++   ++ F K  +K++ ++  ++   +   +   +DF    A P   
Sbjct: 139 AKSNWFLAFCSLFTAIMILTFAKGLMKLVPIIAGVVVGYIVALFMHQVDFAGVVAAPWFS 198

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIG 212
               F T+        L++  + +  + 
Sbjct: 199 FPVKFDTISHFSWEPFLYMLPVAIAPVL 226


>gi|49474657|ref|YP_032699.1| hypothetical protein BQ11640 [Bartonella quintana str. Toulouse]
 gi|49240161|emb|CAF26623.1| hypothetical protein BQ11640 [Bartonella quintana str. Toulouse]
          Length = 202

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 5/142 (3%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK-LEDISHIVFLLTHLSLSAS 92
            +   S+L   I+  F  +    S+   +          + L++   + FL+  L+LS  
Sbjct: 59  IATACSVLGG-IFGWFIGNFAYDSLAKPILEFYGRIENFQALQNGVTLQFLVILLALSGF 117

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
             + P  ++ ++ G+   +   + +  L  +     R  L   + R +    +    +  
Sbjct: 118 LHLPPIKIVTILAGV---MDMHLGLFVLTCIFARGARFYLLAWLIRRFGRQAMNFLARHL 174

Query: 153 VKIILVGTIITISLTENYFTML 174
             I L+G I+ + +   +   +
Sbjct: 175 QWIALIGCIMLLLIYGTFTAFV 196


>gi|320542202|ref|NP_001188638.1| paralytic, isoform AQ [Drosophila melanogaster]
 gi|318069428|gb|ADV37720.1| paralytic, isoform AQ [Drosophila melanogaster]
          Length = 2089

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1263 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1322

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1323 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1381

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1382 VQAIPSIFNVLLVCLIFWLIF 1402


>gi|90415229|ref|ZP_01223163.1| c-type cytochrome biogenesis protein [marine gamma proteobacterium
           HTCC2207]
 gi|90332552|gb|EAS47722.1| c-type cytochrome biogenesis protein [marine gamma proteobacterium
           HTCC2207]
          Length = 575

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 4/161 (2%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL-SASRLVIPG 98
            +  LIYL F    G+         L++     + E+     F+   L+   AS    P 
Sbjct: 269 FVIFLIYLFFVMGLGLSGYLEIGSSLMSVGQNSQSEEGLRSSFMTGVLATTVASPCTAPF 328

Query: 99  LLLFMMFGIGSYLIQRIPVLN--LNHVKPSFKRVSLREGI-KRIYSINNLVNFMKSFVKI 155
           +   + F I       + V       +   F  ++   G+ KR+      ++ +K F+  
Sbjct: 329 MGPALGFAISQSASIAVLVFACLGLGMALPFILLAWIPGLTKRLPKPGPWMDLLKQFLAF 388

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL 196
            +  T + +       T +D  +A    ++          L
Sbjct: 389 PIYMTAVWLLWVAGRQTSIDVAAAVIIGLILVVMGLWVWKL 429


>gi|332863422|ref|XP_003318098.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1 isoform 3 [Pan troglodytes]
          Length = 230

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|320542146|ref|NP_001188610.1| paralytic, isoform O [Drosophila melanogaster]
 gi|318069400|gb|ADV37692.1| paralytic, isoform O [Drosophila melanogaster]
          Length = 2092

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1266 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1325

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1326 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1384

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1385 VQAIPSIFNVLLVCLIFWLIF 1405


>gi|320542134|ref|NP_001188604.1| paralytic, isoform I [Drosophila melanogaster]
 gi|318069394|gb|ADV37686.1| paralytic, isoform I [Drosophila melanogaster]
          Length = 2079

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1253 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1312

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1313 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1371

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1372 VQAIPSIFNVLLVCLIFWLIF 1392


>gi|218675749|gb|AAI69233.2| transient receptor potential cation channel, subfamily M, member 7
           [synthetic construct]
          Length = 648

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|320542152|ref|NP_001188613.1| paralytic, isoform R [Drosophila melanogaster]
 gi|318069403|gb|ADV37695.1| paralytic, isoform R [Drosophila melanogaster]
          Length = 2079

 Score = 36.7 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 1253 TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 1312

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L+    +     ++ + + +     + R+  +      L
Sbjct: 1313 NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1371

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1372 VQAIPSIFNVLLVCLIFWLIF 1392


>gi|74000124|ref|XP_862813.1| PREDICTED: similar to Transient receptor potential cation channel
           subfamily M member 7 (Long transient receptor potential
           channel 7) (LTrpC7) (Channel-kinase 1) isoform 5 [Canis
           familiaris]
          Length = 1859

 Score = 36.7 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|78044282|ref|YP_359239.1| anion ABC transporter permease [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996397|gb|ABB15296.1| anion ABC transporter, permease protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 230

 Score = 36.7 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 52  SPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLF--------- 102
              I+    +   L+ +      + +   + +    +L A+ + +P              
Sbjct: 1   MEFIWEGIKESIRLILTGDPELYQILHLTLNVSLTATLLAAIVGLPIGAFLGGKKFWGQK 60

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN--LVNFMKSFVKIILVGT 160
           ++ GI + L+   PV+    +     R      +  +Y+     L  F  +  ++I+   
Sbjct: 61  IILGIFNALLGLPPVVVGLWLTMFLWRSGPLGNLNLLYTPKAMILAQFCIALPEVIVFTA 120

Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           +    ++EN+F  +  + AN +  LY     VR  L+  ++      +
Sbjct: 121 VAFSQISENFFRQVKALGANRYQQLYLLLKEVRLGLLAAVIAGFGAAI 168


>gi|301770089|ref|XP_002920457.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 7-like [Ailuropoda melanoleuca]
          Length = 1910

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 302 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 361

Query: 297 NLIA 300
              A
Sbjct: 362 GRAA 365


>gi|223462573|gb|AAI50710.1| Transient receptor potential cation channel, subfamily M, member 7
           [Mus musculus]
          Length = 1863

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|256773285|ref|NP_067425.2| transient receptor potential cation channel subfamily M member 7
           isoform 1 [Mus musculus]
 gi|56404937|sp|Q923J1|TRPM7_MOUSE RecName: Full=Transient receptor potential cation channel subfamily
           M member 7; AltName: Full=Channel-kinase 1; AltName:
           Full=Long transient receptor potential channel 7;
           Short=LTrpC-7; Short=LTrpC7; AltName: Full=Transient
           receptor potential-phospholipase C-interacting kinase;
           Short=TRP-PLIK
 gi|14009344|gb|AAK50377.1| LTRPC7 [Mus musculus]
 gi|122890059|emb|CAM14550.1| transient receptor potential cation channel, subfamily M, member 7
           [Mus musculus]
 gi|148696221|gb|EDL28168.1| transient receptor potential cation channel, subfamily M, member 7
           [Mus musculus]
          Length = 1863

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|281341526|gb|EFB17110.1| hypothetical protein PANDA_009197 [Ailuropoda melanoleuca]
          Length = 1867

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|293346294|ref|XP_002726218.1| PREDICTED: transient receptor potential cation channel, subfamily
           M, member 7 [Rattus norvegicus]
 gi|149023200|gb|EDL80094.1| rCG27212, isoform CRA_b [Rattus norvegicus]
          Length = 1862

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|109468761|ref|XP_001056331.1| PREDICTED: transient receptor potential cation channel, subfamily
           M, member 7 [Rattus norvegicus]
 gi|215274952|sp|Q925B3|TRPM7_RAT RecName: Full=Transient receptor potential cation channel subfamily
           M member 7; AltName: Full=Long transient receptor
           potential channel 7; Short=LTrpC-7; Short=LTrpC7;
           AltName: Full=Transient receptor potential-phospholipase
           C-interacting kinase; Short=TRP-PLIK
          Length = 1862

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|256773287|ref|NP_001157797.1| transient receptor potential cation channel subfamily M member 7
           isoform 2 [Mus musculus]
 gi|14211383|gb|AAK57433.1|AF376052_1 transient receptor potential phospholipase C interacting kinase
           [Mus musculus]
 gi|122890058|emb|CAM14549.1| transient receptor potential cation channel, subfamily M, member 7
           [Mus musculus]
          Length = 1862

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|8131903|gb|AAF73131.1|AF149013_1 transient receptor potential-related protein [Mus musculus]
          Length = 1863

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|74000122|ref|XP_862791.1| PREDICTED: similar to transient receptor potential cation channel,
           subfamily M, member 7 isoform 4 [Canis familiaris]
          Length = 1875

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|74000116|ref|XP_535475.2| PREDICTED: similar to Transient receptor potential cation channel
           subfamily M member 7 (Long transient receptor potential
           channel 7) (LTrpC7) (Channel-kinase 1) isoform 1 [Canis
           familiaris]
          Length = 1867

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|56384981|gb|AAV85961.1| Wzy [Escherichia coli]
          Length = 446

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 27/220 (12%)

Query: 28  APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA---TQRKLEDISHIVFLL 84
             IS  + LF  I+ CL     F +P  + + S    +L      +Q   E+++ ++   
Sbjct: 39  VIISVSSVLFCVIIICLERQGGFLNPMTFCIISVFFFILIRPVFFSQNITENLNEVITAG 98

Query: 85  THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSF----KRVSLREGIKRIY 140
             +        +  + + + F +  Y +Q+  V  L    P      K++S+      ++
Sbjct: 99  LEIDEIYVFYSLAVVNIPLAFTVLLYSVQKGTVSKLVGQLPDLFFYNKQLSMILLWGGLF 158

Query: 141 SINNLVNFMKSFVKIILVGTI-------------ITISLTENYFTMLDFISANPHSILYH 187
           S    +  +KS+ K I++G +             +       Y  +L  + +   + + +
Sbjct: 159 SA---IFLIKSYKKFIILGQVSVFEADAYGLYDELFWFTLSKYCYILSLLFSKNKNFILY 215

Query: 188 AFFTVRKVLIMILLFI----ATLTVLDIGWSYHQWYSKLK 223
           +       +  IL+ +         L + +   ++  K+K
Sbjct: 216 SLLIFITSIGYILVGLRGYTIAYGFLLLFFLDIRYRLKIK 255


>gi|293611193|ref|ZP_06693491.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826444|gb|EFF84811.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 479

 Score = 36.7 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 64/180 (35%), Gaps = 11/180 (6%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLED---ISHIVFLLTHLSLS 90
           A++ S ++   + +L     G  +  S +     +  +   +D   +S +   +T     
Sbjct: 46  AAILSFLITGTLIILVMRMLGELATASPVTGSFYAYARYAFQDSPFLSRLAGFMTGWMYW 105

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL--VNF 148
              +++  L   +   + +Y +  IP   ++ V        +      ++S+ +     F
Sbjct: 106 YFWVIVIALEAIVGAKLLAYWLPDIPQWIVSLVL------LVLLTATNLFSVKSFGEFEF 159

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
             S +K+  +G  I +     +    +  ++    +L H  F     + ++   +A    
Sbjct: 160 WFSSIKVAAIGVFIFLCSLYLFGFWPNHQASGLGELLNHGGFMPNGWVPVLSGAVAATGF 219


>gi|73951155|ref|XP_545816.2| PREDICTED: similar to transient receptor potential cation channel,
           subfamily M, member 1 [Canis familiaris]
          Length = 1774

 Score = 36.7 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 386 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 445

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 446 G-RASDILSFAHKY 458


>gi|307327809|ref|ZP_07606992.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
 gi|306886521|gb|EFN17524.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
          Length = 425

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 25/199 (12%)

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY--HQWYS 220
                    ++   + A P  I + A        ++   F+     LD        Q   
Sbjct: 153 YWYGFLPIDSLWTALLAVPVGIGFMALGATVSPFLLRGHFLLARAFLDPTPQMALEQRVQ 212

Query: 221 KLKMSKQEIKD----EIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR-----ATIIITN 271
           +L  ++ +  D    E+++   +     + + +A       +     +       ++   
Sbjct: 213 RLTETRHDAVDTSAAELRRIERDLHDGAQARLVAMGMSLGTVEALIEKDPAQARELLAAA 272

Query: 272 PTHYALALRYIQTEND---APVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLA-RSLFKQ 327
            T+ A AL  ++        PVL  +G       +R +A    +P+  +  LA R+    
Sbjct: 273 RTNSAEALSELRDLVRGIHPPVLAERGLGD---AVRALALRMAVPVEVDVDLAGRA---- 325

Query: 328 VPINSAIPPVFYKAVAQLI 346
              +  +    Y AV++++
Sbjct: 326 ---DEPVESAAYFAVSEVL 341


>gi|239630179|ref|ZP_04673210.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239527791|gb|EEQ66792.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 275

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 46  YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
           +L   +   +  V  ++   L       +   +  +     L  L      +++ G L  
Sbjct: 77  FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 136

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156
               + + LI    V  +    P+  R  L   +K++ +        +L+  + +    I
Sbjct: 137 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 196

Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214
            +  ++ I + +        +    H+ +    A   V  +   +   +  +  + +   
Sbjct: 197 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 256

Query: 215 YHQWYSKLK--MSK 226
            + ++ + +  M++
Sbjct: 257 TYWFWRQNRQVMTR 270


>gi|225405397|ref|ZP_03760586.1| hypothetical protein CLOSTASPAR_04617 [Clostridium asparagiforme
           DSM 15981]
 gi|225043099|gb|EEG53345.1| hypothetical protein CLOSTASPAR_04617 [Clostridium asparagiforme
           DSM 15981]
          Length = 430

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 33/215 (15%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIP 97
           + ILA     +      +  +   +   ++      L   +  V +   +++  +     
Sbjct: 10  ARILALGFLAVILLGSFLLMLPCSVRPGVSLHYVDALFTSTSAVCVTGLIAVDTADTYTA 69

Query: 98  G-----LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
                   L  + G+G   +    +L +       +R+ +RE +  + S   LV+ +K+ 
Sbjct: 70  FGQAVVAALIQIGGLGVTSVGVGFILAMGKRVNLKERLLIREAM-NLESGRGLVSLVKNI 128

Query: 153 VKIILV-----GTIITISLTENYFTMLDFISANPHSILY--------------------H 187
           +K+ LV       +  +    +Y  +     +  HSI                      +
Sbjct: 129 LKVTLVFELTGAVLSFLVFRRDYPPVHALGISLFHSIAAFNNSGFDILGGLKNLSGYRDN 188

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
               +    ++    +  L ++DI     + + KL
Sbjct: 189 VLLNLTTAGLITFGGLGFLVIMDIV--RKRSFKKL 221


>gi|46908523|ref|YP_014912.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224898|ref|YP_002759005.1| Na+/H+ antiporter [Listeria monocytogenes Clip81459]
 gi|254825072|ref|ZP_05230073.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL J1-194]
 gi|254854305|ref|ZP_05243653.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL R2-503]
 gi|254933319|ref|ZP_05266678.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           HPB2262]
 gi|254993298|ref|ZP_05275488.1| Na+/H+ antiporter [Listeria monocytogenes FSL J2-064]
 gi|255521713|ref|ZP_05388950.1| Na+/H+ antiporter [Listeria monocytogenes FSL J1-175]
 gi|300763900|ref|ZP_07073896.1| sodium:hydrogen exchanger family protein [Listeria monocytogenes
           FSL N1-017]
 gi|46881795|gb|AAT05089.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225877360|emb|CAS06074.1| Putative Na+/H+ antiporter [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258607697|gb|EEW20305.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL R2-503]
 gi|293584880|gb|EFF96912.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           HPB2262]
 gi|293594315|gb|EFG02076.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL J1-194]
 gi|300515241|gb|EFK42292.1| sodium:hydrogen exchanger family protein [Listeria monocytogenes
           FSL N1-017]
 gi|328471571|gb|EGF42451.1| Na+/H+ antiporter [Listeria monocytogenes 220]
 gi|332312776|gb|EGJ25871.1| Sodium/hydrogen exchanger protein [Listeria monocytogenes str.
           Scott A]
          Length = 650

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
             FS + A   +LL             L  ++     R+L   +   F+L  + L     
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 95  VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149
           ++   +    ++  +   ++      +   + P   +++L         I+S+N LV   
Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                 IL+GT +   L   +             IL   F  +    + IL F
Sbjct: 286 -----FILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 333


>gi|47214189|emb|CAG00817.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1342

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 246 QKSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMR 304
           ++ + +     K+        +I+   P   ++ L  ++ E   PV++  G    A  + 
Sbjct: 247 RRQLEKHIALQKINTRVPVVCLILEGGPNVISIMLESLREEPPVPVVICDGSG-RAADII 305

Query: 305 KIAYEH 310
             A+++
Sbjct: 306 SFAHKY 311


>gi|13631306|sp|Q9TUK4|MSHR_PANTR RecName: Full=Melanocyte-stimulating hormone receptor; Short=MSH-R;
           AltName: Full=Melanocortin receptor 1; Short=MC1-R
 gi|5777722|emb|CAB53398.1| melanocortin 1 receptor [Pan troglodytes]
 gi|126635481|dbj|BAF48468.1| melanocortin 1 receptor [Pan troglodytes]
 gi|332150738|dbj|BAK20443.1| melanocortin 1 receptor [Pan troglodytes verus]
 gi|332150740|dbj|BAK20444.1| melanocortin 1 receptor [Pan troglodytes verus]
          Length = 317

 Score = 36.7 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLH---VLLASATQRKLEDISHIVFLLTHLSL 89
           +    SS+L+ L +L         S+   L    ++     +R +  I     L + L +
Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAIAAIWVASVLFSTLFI 180

Query: 90  S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
           +          LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 181 AYCDHTAVLLCLVVFFLAVLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312


>gi|221121310|ref|XP_002159206.1| PREDICTED: similar to GK17226 [Hydra magnipapillata]
          Length = 518

 Score = 36.7 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 12/180 (6%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
           A     +L  L+  +      +YS++ D  +    +       +  I  +L+ L +    
Sbjct: 328 AGAICGLLGSLLVSIIPIPRMLYSMSQDGLLFNFFSIVHPKSQVPVISTILSGLFIGILA 387

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            +I    L  M  IG+ L   I V+ +  ++               Y   +L+       
Sbjct: 388 AIIDLAELVEMMSIGTLLAYSIVVICVLILRYDLTP--PPN---NNYESESLIEI---IF 439

Query: 154 KIILVGTIITISL----TENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
            I LV T+I + +     +N    +  I   P   L+   + +  +  +  +       +
Sbjct: 440 IIALVATVIYLFVKDTTKDNLAFKVPMIPWIPVVALFFNVYLMSMLSQITWIRFGIWLFI 499


>gi|191639254|ref|YP_001988420.1| hypothetical protein LCABL_24960 [Lactobacillus casei BL23]
 gi|190713556|emb|CAQ67562.1| Putative uncharacterized protein yhfC (YhfC protein) [Lactobacillus
           casei BL23]
 gi|327383335|gb|AEA54811.1| Membrane protein [Lactobacillus casei LC2W]
 gi|327386518|gb|AEA57992.1| Membrane protein [Lactobacillus casei BD-II]
          Length = 215

 Score = 36.7 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 46  YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
           +L   +   +  V  ++   L       +   +  +     L  L      +++ G L  
Sbjct: 17  FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 76

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156
               + + LI    V  +    P+  R  L   +K++ +        +L+  + +    I
Sbjct: 77  FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 136

Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214
            +  ++ I + +        +    H+ +    A   V  +   +   +  +  + +   
Sbjct: 137 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 196

Query: 215 YHQWYSKLK--MSK 226
            + ++ + +  M++
Sbjct: 197 TYWFWRQNRQVMTR 210


>gi|332262627|ref|XP_003280363.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1 isoform 4 [Nomascus leucogenys]
          Length = 230

 Score = 36.7 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ E   PV++  G 
Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVICDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|291276839|ref|YP_003516611.1| major facilitator superfamily oligopeptide transporter
           [Helicobacter mustelae 12198]
 gi|290964033|emb|CBG39872.1| putative oligopeptide transporter (major facilitator superfamily
           protein) [Helicobacter mustelae 12198]
          Length = 496

 Score = 36.7 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 64/178 (35%), Gaps = 15/178 (8%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+F   +  L  +      G++   + + V +         D     F++ ++ ++   
Sbjct: 102 LSVFWHFMFFLGLVFIVLGSGLFKTCASVMVGMLYKDGDARRDSG---FIIFYMGINLGA 158

Query: 94  LVIPGLLLFMM--------FGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145
            V P L   +         FGIG   +    ++      P F     + G+ + +S  N 
Sbjct: 159 FVAPLLCGLVQKQYGWHWGFGIGGLGMLISLIIFYFKAIPDFNDFDRKFGLDKSWSSPNT 218

Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFI 203
              +K+    + VG  + +     +   + ++  NP  +  +  F +    I+  +++
Sbjct: 219 K--VKNIG--LYVGIALALLFAFIFACGVGWVKINPVWVAKNMVFLISACAILYFIYL 272


>gi|217963549|ref|YP_002349227.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           HCC23]
 gi|217332819|gb|ACK38613.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           HCC23]
 gi|307571875|emb|CAR85054.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           L99]
          Length = 650

 Score = 36.7 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
             FS + A   +LL             L  ++     R+L   +   F+L  + L     
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAVLSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 95  VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149
           ++   +    ++  +   ++      +   + P   +++L         I+S+N LV   
Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                 IL+GT +   L   +             IL   F  +    + IL F
Sbjct: 286 -----FILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFF 333


>gi|293392492|ref|ZP_06636812.1| inner membrane protein YbaL [Serratia odorifera DSM 4582]
 gi|291424894|gb|EFE98103.1| inner membrane protein YbaL [Serratia odorifera DSM 4582]
          Length = 564

 Score = 36.7 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 70/211 (33%), Gaps = 27/211 (12%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
           +  +  LA +  +L  F  G++    DL  + + A    +  I+    L   LS      
Sbjct: 54  TSLAPELAEIGVILLMFGVGLHFSLKDLLAVKSIAIPGAVAQIAVATLLGIGLSHLLGWD 113

Query: 95  VIPGLLLFMMFGIGSYLI-------------QRIPVLNLNHVKPSFKRV----------S 131
           +I GL+  +     S ++             QR  +     +      V          +
Sbjct: 114 LISGLVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLAMVLTLVLLPAFGN 173

Query: 132 LREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191
           L  G     ++  L     +  K++    ++ +        +L    A   S      FT
Sbjct: 174 LLGGGNHASTLQLLSELAITIGKVVAFMALMIVVGRRAVPWIL----AKTASTGSRELFT 229

Query: 192 VRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
           +  + + + +    + + D+ ++   +++ +
Sbjct: 230 LAVLALALGIAYGAVGLFDVSFALGAFFAGM 260


>gi|309389269|gb|ADO77149.1| nucleoside ABC transporter membrane protein [Halanaerobium
           praevalens DSM 2228]
          Length = 299

 Score = 36.7 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 57/184 (30%), Gaps = 12/184 (6%)

Query: 26  GNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
           G     +   +  ++   +++  F    G     S    L+ +     L      +  + 
Sbjct: 29  GGIFSEKSGVINIALEGIMLFGAFAAVLGSSQTGSPWMGLVYAMIGGVLF---AAILAVV 85

Query: 86  HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145
            +   A ++V+   +     G+  +L+Q     N+    P   R+         +S+   
Sbjct: 86  CILFRADQIVVGTGINIFASGLTIFLLQ--IFFNVKGTSPQVTRLPFLRIFDVRFSVLTY 143

Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
           V        +ILV  +       ++   +  I  +P +         R   I +L+    
Sbjct: 144 V-------AVILVPIVYYFFFKTHWGLRIRSIGEHPAAADTLGINVNRWRFISVLMSGVL 196

Query: 206 LTVL 209
             + 
Sbjct: 197 AGLA 200


>gi|257876622|ref|ZP_05656275.1| auxin efflux carrier family permease [Enterococcus casseliflavus
           EC20]
 gi|257810788|gb|EEV39608.1| auxin efflux carrier family permease [Enterococcus casseliflavus
           EC20]
          Length = 313

 Score = 36.7 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
            I+  L  ++ +F+  ++   + +      A        + I   L           +P 
Sbjct: 68  MIIPLLSMMITYFAGYLWRRFAQVETKHQGAFSAMFTFSNTIFIGLPINLAIFGEKAVPY 127

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSF--KRVS--LREGIKRIYSINNLVNFMKSFVK 154
           +LL+ +  + + L   I +  L    P F   R+S      +K+I+S             
Sbjct: 128 VLLYYI--VNTTLFWTIGIFELAKDNPDFGEARISFHPLVMLKKIFSP------------ 173

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
             L+G II +        +    +    S +      +  +   + +FI  + V      
Sbjct: 174 -ALIGFIIGL--------IWMLFTFPLPSFVDGLGSYLADLTTPLSMFIIGIIV------ 218

Query: 215 YHQWYSKLKMSKQ 227
           Y      L+M+K 
Sbjct: 219 YFGGLKNLRMTKD 231


>gi|227511005|ref|ZP_03941054.1| conserved hypothetical protein [Lactobacillus buchneri ATCC 11577]
 gi|227085747|gb|EEI21059.1| conserved hypothetical protein [Lactobacillus buchneri ATCC 11577]
          Length = 578

 Score = 36.7 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 19/201 (9%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
            IL   I +  +FS         +     +        + +  F    L +S S L +P 
Sbjct: 119 IILMTFIGVTAYFSYLSIEQGKTIGAYTFAVAYMMSGLLINTNFTAADLGISFSLLFLPL 178

Query: 99  LLLFM----------MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNF 148
           +L  +          M  +G  LI    VLN   V  +   +++    K   + N L+N 
Sbjct: 179 VLAGLYHWLTSNHYKMLTVGISLICLSHVLNFIFVIVTLVLLTIINFKK--VTKNKLINL 236

Query: 149 MKSFVKIILVGTIITI-------SLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
           +K+ V  +LV +   +       S+             N    L+          I I+ 
Sbjct: 237 VKAIVLTVLVTSSFWLPAYSFGTSVKMASPQKFPLAGINLPKYLFLTLTNSTWSSISIVA 296

Query: 202 FIATLTVLDIGWSYHQWYSKL 222
            +  +       +  ++  ++
Sbjct: 297 LLGLILGFVFYRTLPKYLKQI 317


>gi|149181915|ref|ZP_01860403.1| hypothetical protein BSG1_08256 [Bacillus sp. SG-1]
 gi|148850354|gb|EDL64516.1| hypothetical protein BSG1_08256 [Bacillus sp. SG-1]
          Length = 413

 Score = 36.7 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 59  TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVL 118
            + +          K   +   ++ +  + +     ++P  L  ++ GIG  L     V 
Sbjct: 272 ANLMIPFFFKKMTLKTYLLGSTIWAIGIIVIGTFYGILPLFLGAVIVGIGLPLAGLARVY 331

Query: 119 NLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFIS 178
            L  + P        + + R +S N  + ++ + + + + G +++     + F +   I 
Sbjct: 332 LLQTLVPQ-------DMLGRGFSFNAFLLYLANTLALTIFGVLVSYFAINSLFIISGVIM 384

Query: 179 ANPHSILYHAFFT 191
             P  I      +
Sbjct: 385 LFPALIFILLLLS 397


>gi|302871891|ref|YP_003840527.1| rod shape-determining protein RodA [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574750|gb|ADL42541.1| rod shape-determining protein RodA [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 369

 Score = 36.7 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 63/195 (32%), Gaps = 7/195 (3%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                 I+ CL   +   S      T    ++++      L    +++F L    + A+ 
Sbjct: 16  VITILMIILCLTGFILIASATNVLETGKYKLVISQVIWFCLGLSLYLIFSLIDYRMFANF 75

Query: 94  LVIPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLV 146
            VI  + + ++       GI     QR   +     +P    ++ +     ++ ++   +
Sbjct: 76  YVIIYMTMVILLLYVDLKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENI 135

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
           N  K+  K+++   I  + + +        +     + +        +     +  +   
Sbjct: 136 NKFKTLAKVLIFTAIPIVLVLKQPDLGTASVFVAIIATILFVAGLDLRYFYAAIGALLVF 195

Query: 207 TVLDIGWSYHQWYSK 221
             +   +  H++   
Sbjct: 196 IPIAWEFVLHEYQKD 210


>gi|86360100|ref|YP_471989.1| efflux cation transporter protein [Rhizobium etli CFN 42]
 gi|86284202|gb|ABC93262.1| probable efflux cation transporter protein [Rhizobium etli CFN 42]
          Length = 1050

 Score = 36.7 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 26/203 (12%)

Query: 24   NEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83
             +G    S E     ++   +         G++ + + L VL          D    + L
Sbjct: 832  EQGELQRSSELFQSFALAMAI---------GVFCIYAVLVVLF--------HDFLQPLTL 874

Query: 84   LTHLSLSASRLVIPGLLL---FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
            L  L LS    ++P ++    F M  +   L+    V   + +   +  +S  +G+ R  
Sbjct: 875  LMALPLSLGGALVPLVVTGTSFSMPAVIGLLMLMGVVTKNSILLIEYAIMSRHQGMSRF- 933

Query: 141  SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
              + LV+      + I++ TI            L     +       A   +  V++  L
Sbjct: 934  --DALVDACHKRARPIVMTTIAMAF--GMLPAALSLTGGDSSFRQPMAIVVIGGVIMSTL 989

Query: 201  LFIATL-TVLDIGWSYHQWYSKL 222
            L +  +  +       H+W  +L
Sbjct: 990  LSLIVIPVIFTFVDDLHEWLKRL 1012


>gi|329770101|ref|ZP_08261494.1| hypothetical protein HMPREF0433_01258 [Gemella sanguinis M325]
 gi|328837283|gb|EGF86917.1| hypothetical protein HMPREF0433_01258 [Gemella sanguinis M325]
          Length = 471

 Score = 36.7 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 41  LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL- 99
           +     L       IY           S+T   +  I  I   +  +       +IPG+ 
Sbjct: 46  IVSYFALFAMLGISIYGTKQIAASRDVSSTFWNIYIIQVITSGIAIVIYFFIIKLIPGMS 105

Query: 100 ---LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
               L +   +   L+    + +       FK++++R GI ++  + ++  F+KS  +  
Sbjct: 106 GMIPLILAISLFGKLVDISWLFSGKE---DFKKITIRNGIVKLAGVLSIFTFIKS--QDQ 160

Query: 157 LVGTIITISLTENYFTMLDFISA 179
           L   +  + + +    ++ ++ A
Sbjct: 161 LYLYVFFLVIFDFLGQLVMWVPA 183


>gi|257867717|ref|ZP_05647370.1| auxin efflux carrier [Enterococcus casseliflavus EC30]
 gi|257874044|ref|ZP_05653697.1| auxin efflux carrier [Enterococcus casseliflavus EC10]
 gi|257801800|gb|EEV30703.1| auxin efflux carrier [Enterococcus casseliflavus EC30]
 gi|257808208|gb|EEV37030.1| auxin efflux carrier [Enterococcus casseliflavus EC10]
          Length = 313

 Score = 36.7 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 33/193 (17%)

Query: 39  SILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
            I+  L  ++ +F+  ++   + +      A        + I   L           +P 
Sbjct: 68  MIIPLLSMMITYFAGYLWRRFAQVETKHQGAFSAMFTFSNTIFIGLPINLAIFGEKAVPY 127

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSF--KRVS--LREGIKRIYSINNLVNFMKSFVK 154
           +LL+ +  + + L   I +  L    P F   R+S      +K+I+S             
Sbjct: 128 VLLYYI--VNTTLFWTIGIFELAKDNPDFGEARISFHPLVMLKKIFSP------------ 173

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWS 214
             L+G II +        +    +    S +      +  +   + +FI  + V      
Sbjct: 174 -ALIGFIIGL--------IWMLFTFPLPSFVDGLGSYLADLTTPLSMFIIGIIV------ 218

Query: 215 YHQWYSKLKMSKQ 227
           Y      L+M+K 
Sbjct: 219 YFGGLKNLRMTKD 231


>gi|255283992|ref|ZP_05348547.1| ribose ABC transporter, permease protein [Bryantella formatexigens
           DSM 14469]
 gi|255265445|gb|EET58650.1| ribose ABC transporter, permease protein [Bryantella formatexigens
           DSM 14469]
          Length = 338

 Score = 36.7 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           P   L  + G+G+ L     ++    +  +F  ++       ++S  N++N ++S  K +
Sbjct: 8   PLKKLLGIRGMGAALTAFAGLI---IIYIAFGLINPA-----VFSGQNILNLLRSMSKYL 59

Query: 157 LVGTI-ITISLTENYFT----MLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
           L+G     I +T N       M+   +    +++ H    +  +L+ +L  +A
Sbjct: 60  LIGIAQSYILITGNIDLSIGSMVGMSAMISATLMTHGVHPLFAILVALLACLA 112


>gi|268680041|ref|YP_003304472.1| hypothetical protein Sdel_1419 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618072|gb|ACZ12437.1| hypothetical protein Sdel_1419 [Sulfurospirillum deleyianum DSM
           6946]
          Length = 1215

 Score = 36.3 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 128 KRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYH 187
            +       KRI       N  KSF+ + +V  +    L+  +       ++    +   
Sbjct: 136 DKTIPYSRFKRI------KNLKKSFLILHVVAIV--FFLSYVFSIYFPTKASAFLQVSQA 187

Query: 188 AFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
            F +      M+ LFI     L   + + ++ S LK+SK  +K
Sbjct: 188 DFISALNESKMLFLFIVLPIGLYYFYQFIKYLSNLKISKFNLK 230


>gi|153812723|ref|ZP_01965391.1| hypothetical protein RUMOBE_03130 [Ruminococcus obeum ATCC 29174]
 gi|149831239|gb|EDM86328.1| hypothetical protein RUMOBE_03130 [Ruminococcus obeum ATCC 29174]
          Length = 443

 Score = 36.3 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 21/179 (11%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F++ LAC  +        I    + +     +  + KL      +FL    S+S + LV 
Sbjct: 151 FAAALACCGFTFLLGGGFIEMFCAFVGAGFGNFLRCKLTKHHFTLFLCIVSSVSLACLVY 210

Query: 97  PGLLLF--MMFGI--------GSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            G L    M+FGI           ++  IP            ++ +R G +R+  +  L+
Sbjct: 211 AGFLKIGEMLFGISVQHEAGYICAMLFIIPGFPFITSGIDLAKLDMRSGTERL--MYALI 268

Query: 147 NFMKSFVKIILVGTIITISLTENYFTM-LDFISANPHSILYHAFFTVRKVLIMILLFIA 204
                   ++LV T+    +        +DFI  +    ++     +     +    + 
Sbjct: 269 --------VVLVATMAAWIMALLLHLQPVDFIKMSMPVGMWIVLHLIASFCGVFGFSVM 319


>gi|312127630|ref|YP_003992504.1| rod shape-determining protein roda [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777649|gb|ADQ07135.1| rod shape-determining protein RodA [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 369

 Score = 36.3 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 63/195 (32%), Gaps = 7/195 (3%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                 I+ CL   +   S      T    ++++      L    + +F L    + A+ 
Sbjct: 16  VITILMIILCLTGFILIASATNVLETGKYKLVISQVIWFCLGLSLYFIFSLIDYRIFANF 75

Query: 94  LVIPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLV 146
            VI  +++ ++       GI     QR   +     +P    ++ +     ++ ++   +
Sbjct: 76  YVIIYMIMVILLLYVDIKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENI 135

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
           N  K+  K+++   I  + + +        +     + +        +     +  +   
Sbjct: 136 NKFKTLAKVLIFTAIPIVLVLKQPDLGTASVFIAIIATILFVAGLDLRYFYAAIGALLVF 195

Query: 207 TVLDIGWSYHQWYSK 221
             +   +  H++   
Sbjct: 196 IPIAWEFVLHEYQKD 210


>gi|11993700|gb|AAG42856.1|AF325212_1 melastatin 2 [Homo sapiens]
          Length = 338

 Score = 36.3 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +I+   P   ++ L Y++     PV+V  G 
Sbjct: 261 EVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGS 320

Query: 297 NLIAKKMRKIAYEH 310
              A  +    +++
Sbjct: 321 G-RASDILAFGHKY 333


>gi|94309606|ref|YP_582816.1| major facilitator transporter [Cupriavidus metallidurans CH34]
 gi|93353458|gb|ABF07547.1| Major facilitator superfamily MFS_1 transporter [Cupriavidus
           metallidurans CH34]
          Length = 418

 Score = 36.3 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 64/197 (32%), Gaps = 30/197 (15%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           RE  L +  L  L    F    G         +LL     R+ E +  ++ +   L  + 
Sbjct: 53  RELGLTAGDLGLLTSFYFL---GFACAQLPAGILLDRFGPRRTEAVMLMLAVAGSLVFAW 109

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
           +  ++       M G+G  +     +  L+   P          + R+  +N LV  +  
Sbjct: 110 APGMVGLAAGRAMIGVGVSVCLGAAIQALSMWFP----------LSRMPLLNGLVMAIGG 159

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
              +++   +  +    ++ T+   +                 V+   +  +    V D+
Sbjct: 160 LGAVVVGAPLSWLLSWTDWRTISAGM----------------AVISFGMAALLWFGVPDV 203

Query: 212 GWS-YHQWYSKLKMSKQ 227
                  +  +L+ ++Q
Sbjct: 204 KRQGKESFAEQLRGTRQ 220


>gi|332863416|ref|XP_003318096.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1 isoform 1 [Pan troglodytes]
          Length = 1642

 Score = 36.3 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 262 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 321

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 322 G-RASDILSFAHKY 334


>gi|255325377|ref|ZP_05366483.1| integral membrane protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255297942|gb|EET77253.1| integral membrane protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 230

 Score = 36.3 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 214 SYHQWYSKLK--MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
             +Q    +K  MSK E K E K+       +  ++   R   + +M E   R
Sbjct: 66  QRYQHRKDMKKSMSKDEWK-EYKKKE-----RQERQQANRE-QQARMAEGDPR 111


>gi|116195220|ref|XP_001223422.1| hypothetical protein CHGG_04208 [Chaetomium globosum CBS 148.51]
 gi|88180121|gb|EAQ87589.1| hypothetical protein CHGG_04208 [Chaetomium globosum CBS 148.51]
          Length = 649

 Score = 36.3 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK----LEDISHIVFLLT 85
            S E   F+S L     +L    P  ++       L  +A          D   I +   
Sbjct: 292 KSFEVLFFASFLFLYYAVLMERDPTRFTTLEVFLCLWLAAFAYDELSEWIDAGSIFYAAD 351

Query: 86  HLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNL 145
             ++    ++  G   F M G+         +++L     + + + +     R++SI +L
Sbjct: 352 VWNIFDMFMIGIGFTYFAMLGVVGLGTNNARLVDLAFDVLALEALFMVP---RVFSILSL 408

Query: 146 V----NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
                   K F+K +++  +I +     + T    ++ + +S+   A    R       +
Sbjct: 409 SPYWGEMGKDFLKFMVLVVVIYLG----FLTTFSLVARDAYSLNDMAGSLTRIFFGSSGV 464

Query: 202 FIATLTVLDIGW 213
               +  +D  +
Sbjct: 465 GFDIMHNIDSIF 476


>gi|297624348|ref|YP_003705782.1| DegT/DnrJ/EryC1/StrS aminotransferase [Truepera radiovictrix DSM
           17093]
 gi|297165528|gb|ADI15239.1| DegT/DnrJ/EryC1/StrS aminotransferase [Truepera radiovictrix DSM
           17093]
          Length = 394

 Score = 36.3 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 264 RATIIITNPTHYALALRYIQTENDAP----VLVAKGQNLIAKKMRKIAYEHNIPIFEEPS 319
            A     +P H   AL     +  AP    ++   G     +++  +   + +P+ E+  
Sbjct: 120 EADTWNMSPEHLERALAERAAQGRAPKAVILVHLYGMPAKMREIMALCERYGVPVIEDA- 178

Query: 320 LARSLFKQVP 329
            A +L     
Sbjct: 179 -AEALGSTYE 187


>gi|254567672|ref|XP_002490946.1| Chitin synthase III, catalyzes the transfer of N-acetylglucosamine
            (GlcNAc) to chitin [Pichia pastoris GS115]
 gi|238030743|emb|CAY68666.1| Chitin synthase III, catalyzes the transfer of N-acetylglucosamine
            (GlcNAc) to chitin [Pichia pastoris GS115]
 gi|328352521|emb|CCA38920.1| chitin synthase [Pichia pastoris CBS 7435]
          Length = 1188

 Score = 36.3 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 140  YSINNLV--NFMKSFV---KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV-- 192
            +S+  ++    + + V    I     +I  ++  +   +L  +       L      V  
Sbjct: 1000 FSMQFVIGIELVGTLVLPAAICFTVYVIIFAIVSHPTPILSLVLLGIIFGLPGLLIVVTV 1059

Query: 193  --RKVLIMILLFIATLTVLDIGWSYHQWYS-------KLKMSKQEIKDEIKQSYG---NP 240
                 ++ +L+++  L + +     + ++        + +++  EIKD   +  G     
Sbjct: 1060 SSWSYILWLLVYLVALPIWNFVLPSYAYWKFDDFSWGETRVTSHEIKDAHGEIEGLFDGS 1119

Query: 241  IIKNRQ-KSIARSRIRHK 257
             I  ++ +   R R R  
Sbjct: 1120 HIIQKRWREFERDRRRSN 1137


>gi|227533669|ref|ZP_03963718.1| membrane protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227188653|gb|EEI68720.1| membrane protein [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 279

 Score = 36.3 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 46  YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
           +L   +   +  V  ++   L       +   +  +     L  L      +++ G L  
Sbjct: 81  FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKAATPETPFLYGLGHGGLEMILIGSLTM 140

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156
               + + LI    V  +    P+  R  L   +K++ +        +L+  + +    I
Sbjct: 141 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 200

Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214
            +  ++ I + +        +    H+ +    A   V  +   +   +  +  + +   
Sbjct: 201 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGALNGAVEEVLLVVQTILVLAF 260

Query: 215 YHQWYSKLK--MSK 226
            + ++ + +  M++
Sbjct: 261 TYWFWRQNRQVMTR 274


>gi|332296369|ref|YP_004438292.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense
           DSM 14796]
 gi|332179472|gb|AEE15161.1| transcriptional regulator, LuxR family [Thermodesulfobium narugense
           DSM 14796]
          Length = 459

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 60/195 (30%), Gaps = 15/195 (7%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRL 94
           + S + +  +  LFF S    ++   + ++ L S     L  ++ ++F   +    +   
Sbjct: 80  IVSILFSVFLLGLFFGSYIFDNIFIPIFLIALCSIFFTFLFVLTLLMFFKENFVFWSVIF 139

Query: 95  VIPGLLLFMMFGIGSYLIQRIPVLNLNH---VKPSFKRVSLREGIKRIYSINNLVNFMKS 151
            I  L   ++  + + +      L+ +    +     +++     ++ +S  +   F K 
Sbjct: 140 AISTLFATIVMFLLNKIFNNFSYLSFSSFPLLMFVLSKINFDSYFRKNFSKFDFGVFPKK 199

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI-----------L 200
            + + L       ++                +I Y     V  + I              
Sbjct: 200 IIFVFLGFYCCGGAVYNFLLNFSTNNDYFLSNIAYCISALVLPIFIYFKKLEISSLYRPS 259

Query: 201 LFIATLTVLDIGWSY 215
           L I  +        +
Sbjct: 260 LAILIVAFFWFPLYF 274


>gi|149927835|ref|ZP_01916086.1| sodium/hydrogen exchanger [Limnobacter sp. MED105]
 gi|149823457|gb|EDM82688.1| sodium/hydrogen exchanger [Limnobacter sp. MED105]
          Length = 565

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 18/196 (9%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           SRE    S I   L   L F + G++ V+  L    A    R+ E           LS  
Sbjct: 224 SRELFTLSVI--ALAISLAFVAAGLFDVSFALGAFFAGMVMRESE-----------LSHR 270

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           A+   +P    F +    S  +     + L +       V++    K + +   LV   K
Sbjct: 271 AAEESLPLRDAFAVLFFVSVGMLFQFDVILEYPLRVLAVVAIIVLGKSL-AAGALVLLFK 329

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL- 209
             +K  LV       + E  F ++          L      V   ++ I L     +++ 
Sbjct: 330 YPLKSALVIAASLAQIGEFSFILIGLGLYLGLVDLQVQSLVVSGAILSIALNPVVFSLIP 389

Query: 210 ---DIGWSYHQWYSKL 222
              D      QW   L
Sbjct: 390 KINDYMVQRFQWVRNL 405


>gi|303242602|ref|ZP_07329078.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302589859|gb|EFL59631.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 287

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 62  LHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLN 121
           L+ L   A    +   + I+F++  +   ASR++   L++  +    ++L+    +  L 
Sbjct: 122 LYGLSLLAIYFGIGIAATILFVILGVVTVASRVIGILLIVLFVLAFIAFLLAFAFLTALW 181

Query: 122 HVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANP 181
                   + + +G K+ +S+       KS+    +VG  + + +   +   +     + 
Sbjct: 182 FASMVDDGLGVVDGFKKSFSV------AKSYF-WSIVGISLLVWIGSAFGGGILSGIFSF 234

Query: 182 HSILYHAFFTVRKVLIMILLFIATLTV 208
             ++ + F +    L   +L +    V
Sbjct: 235 IPVISYTFSSGVSALAQFILIVFYFEV 261


>gi|238757509|ref|ZP_04618694.1| Uncharacterized mscS family protein [Yersinia aldovae ATCC 35236]
 gi|238704271|gb|EEP96803.1| Uncharacterized mscS family protein [Yersinia aldovae ATCC 35236]
          Length = 1105

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 7/146 (4%)

Query: 76  DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135
           D+   V  L  +S  + RLV   L +  +  + +   +             +   S   G
Sbjct: 763 DVEEPVIDLDVISAQSLRLVRSILTMIALVSVIALWSEIHSAFGFLENIRLWDVSSTING 822

Query: 136 IKRIYSINNLVNFMKSFVKIILVGTIITISLTEN--YFTMLDFISANPHSILYHAFFTVR 193
           I+   S+  +   M S +  ILV  + T  +        +      +      +A  T+ 
Sbjct: 823 IE---SVQAIT--MGSLLIAILVMIVTTQLVRNLPALLELAILQHLDLTPGTGYAISTIT 877

Query: 194 KVLIMILLFIATLTVLDIGWSYHQWY 219
           K L+++   +   ++L I W+  QW 
Sbjct: 878 KYLLILFGSLLGFSMLGIEWAKFQWL 903


>gi|168185020|ref|ZP_02619684.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           Bf]
 gi|237795423|ref|YP_002862975.1| PTS system fructose family transporter subunit IIBC [Clostridium
           botulinum Ba4 str. 657]
 gi|182671943|gb|EDT83904.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           Bf]
 gi|229261226|gb|ACQ52259.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           Ba4 str. 657]
          Length = 465

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 5/175 (2%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           PG++   + G+ +       +  +      F    +    K +  +      +KS   + 
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGF--FAGYLMLYSKKLLSGLPKQFEGLKSIFILP 262

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           ++G +IT  L       +  ++     ++       +   I++ + I  ++  D 
Sbjct: 263 IIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFDF 314


>gi|240850337|ref|YP_002971730.1| potassium-efflux system protein [Bartonella grahamii as4aup]
 gi|240267460|gb|ACS51048.1| potassium-efflux system protein [Bartonella grahamii as4aup]
          Length = 583

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 65/203 (32%), Gaps = 22/203 (10%)

Query: 27  NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86
               S    L   ++    +          S+ S + +L A   +  +E           
Sbjct: 95  QMAFSTFLGLCLGLIMGWGFGGSLIFGLALSIASTVILLRALQERHLIET--------EK 146

Query: 87  LSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
             ++   L+I  L + ++  +   L   +       + P  + + L      I+ +    
Sbjct: 147 GRIAVGWLIIEDLAMVLILVLIPSLASALSNTKKEALDPLVQWLDLSIWG--IFGL---- 200

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
               + +K+I+   ++ +        +L   + +         F +    I + +     
Sbjct: 201 ----TILKVIVFIALMLVIGRRVIPWLLKMSAQSGS----RELFRLSVFAIALGVAFGAA 252

Query: 207 TVLDIGWSYHQWYSKLKMSKQEI 229
            +  +  S   +++ + MS+ E+
Sbjct: 253 HLFGVSLSLGAFFAGMVMSESEL 275


>gi|332863418|ref|XP_003318097.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1 isoform 2 [Pan troglodytes]
          Length = 1625

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 245 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 304

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 305 G-RASDILSFAHKY 317


>gi|148379953|ref|YP_001254494.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931264|ref|YP_001384251.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A str. ATCC 19397]
 gi|153935815|ref|YP_001387791.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A str. Hall]
 gi|148289437|emb|CAL83534.1| PTS system, IIbc component [Clostridium botulinum A str. ATCC 3502]
 gi|152927308|gb|ABS32808.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A str. ATCC 19397]
 gi|152931729|gb|ABS37228.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A str. Hall]
          Length = 465

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 5/175 (2%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           PG++   + G+ +       +  +      F    +    K +  +      +KS   + 
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGF--FAGYLMLYSKKLLSGLPKQFEGLKSIFILP 262

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           ++G +IT  L       +  ++     ++       +   I++ + I  ++  D 
Sbjct: 263 IIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFDF 314


>gi|78065283|ref|YP_368052.1| preprotein translocase subunit SecF [Burkholderia sp. 383]
 gi|77966028|gb|ABB07408.1| protein translocase subunit secF [Burkholderia sp. 383]
          Length = 316

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL------ 206
           +  +++G +I +S    +   +  I AN H I+    F         L  +A +      
Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDIVIILGFFAFFQWEFSLAVLAAILAVLGY 200

Query: 207 ----TVLDIGWSYHQWYSKLKMSKQEI 229
               +V+        +  + KMS QE+
Sbjct: 201 SVNESVVIFDRIRETFRRERKMSVQEV 227


>gi|120556568|ref|YP_960919.1| Na/Pi-cotransporter II-related protein [Marinobacter aquaeolei VT8]
 gi|120326417|gb|ABM20732.1| Na/Pi-cotransporter II-related protein [Marinobacter aquaeolei VT8]
          Length = 535

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 42  ACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLL 101
           A   + LFF    I     +   L          D     F+L  L  +         L 
Sbjct: 139 ALAGFALFFLGLSILKTALESSALGFQNGHLINADYGLPAFMLIGLLATVLTQSSSAALA 198

Query: 102 FMMFGIGSYLI-------QRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVK 154
            ++      LI         I     +    +   +      +R+ + + L N +   + 
Sbjct: 199 IVLTAAAGGLIPLDNAAAAVIGANLGSTSTAALSALKATANARRLATGHILFNLVTGVIA 258

Query: 155 IILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMI 199
           ++++  ++ +        +LD  +    S  L+H  F V    IM+
Sbjct: 259 LLVLPAMLWLV--NTLTNLLDLEANPAVSLALFHTLFNVLGAAIML 302


>gi|324500123|gb|ADY40068.1| Voltage-dependent L-type calcium channel subunit alpha-1F [Ascaris
           suum]
          Length = 1891

 Score = 36.3 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS---KLKMSKQEIKDEIKQSY-G 238
             +  A  T+  ++++  +      ++ +      ++    + KM++QE + E      G
Sbjct: 922 QCVIVAVKTIGNIMLVTFMLQFMFAIIGVQLFKGTFFKCNDESKMTEQECRGEFLAYEDG 981

Query: 239 NPIIKNRQKS 248
           +P+   R + 
Sbjct: 982 DPMKPQRMRR 991


>gi|226949289|ref|YP_002804380.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A2 str. Kyoto]
 gi|226843405|gb|ACO86071.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           A2 str. Kyoto]
          Length = 465

 Score = 36.3 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 5/175 (2%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSAQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
           PG++   + G+ +       +  +      F    +    K +  +      +KS   + 
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGF--FAGYLMLYSKKLLSGLPKQFEGLKSIFILP 262

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           ++G +IT  L       +  ++     ++       +   I++ + I  ++  D 
Sbjct: 263 IIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFDF 314


>gi|83627713|ref|NP_001032823.1| transient receptor potential cation channel subfamily M member 1
           isoform 1 [Rattus norvegicus]
 gi|123779859|sp|Q2WEA5|TRPM1_RAT RecName: Full=Transient receptor potential cation channel subfamily
           M member 1; AltName: Full=Melastatin-1
 gi|83318701|emb|CAI30141.1| transient receptor potential cation channel,subfamily M, member 1
           long variant [Rattus norvegicus]
          Length = 1628

 Score = 36.3 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 329 G-RASDILSFAHKY 341


>gi|83627699|ref|NP_001032822.1| transient receptor potential cation channel subfamily M member 1
           isoform 2 [Rattus norvegicus]
 gi|83318703|emb|CAI30142.1| transient receptor potential cation channel,subfamily M, member 1
           variant delta1066-1071 [Rattus norvegicus]
          Length = 1622

 Score = 36.3 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 328

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 329 G-RASDILSFAHKY 341


>gi|319638544|ref|ZP_07993306.1| rod shape-determining protein RodA [Neisseria mucosa C102]
 gi|317400293|gb|EFV80952.1| rod shape-determining protein RodA [Neisseria mucosa C102]
          Length = 383

 Score = 36.3 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 21/178 (11%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           LF ++LA  I  LF     +YS        L + T   +   + +  +      +A+++ 
Sbjct: 22  LFFAMLAIYIMSLFL----LYSADGQEFGQLENKTIHTVLGFALLWIIAVFKPQTAAKVA 77

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +P  ++ ++  IG  +       +   +   F R+   E                  +KI
Sbjct: 78  LPVYIVGVLLLIGVEVAGVTVNGSTRWLSLGFTRIQPSE-----------------IMKI 120

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
            +  T+                      IL      +++  +     I    +  I +
Sbjct: 121 GIPMTVAWYFQRYEGRLKWIHYIVALVLILVPVALILKQPDLGTAALIMASGIFVIFF 178


>gi|312135124|ref|YP_004002462.1| rod shape-determining protein roda [Caldicellulosiruptor owensensis
           OL]
 gi|311775175|gb|ADQ04662.1| rod shape-determining protein RodA [Caldicellulosiruptor owensensis
           OL]
          Length = 369

 Score = 36.3 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 64/195 (32%), Gaps = 7/195 (3%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
                 I+ CL   +   S      T    ++++      L    +++F L    + A+ 
Sbjct: 16  VLTILMIILCLTGFILIASATNVLETGKYKLVISQVIWFCLGLSLYLIFSLIDYRMFANF 75

Query: 94  LVIPGLLLFMMF------GIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLV 146
            VI  +++ ++       GI     QR   +     +P    ++ +     ++ ++   +
Sbjct: 76  YVIIYMIMVILLLYVDIKGINVLGGQRWIKIGPFSFQPSEISKLLMVVFFAKVVTMQENI 135

Query: 147 NFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
           N  K+  K+++   I  + + +        +     + +        +     +  +   
Sbjct: 136 NKFKTLAKVLIFTAIPIVLVLKQPDLGTASVFIAIITTILFVAGLDLRYFYAAIGALLVF 195

Query: 207 TVLDIGWSYHQWYSK 221
             +   +  H++   
Sbjct: 196 IPIAWEFILHEYQKD 210


>gi|260550116|ref|ZP_05824330.1| membrane protein [Acinetobacter sp. RUH2624]
 gi|260406871|gb|EEX00350.1| membrane protein [Acinetobacter sp. RUH2624]
          Length = 303

 Score = 36.3 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           +  SL   I   + +  F       ++   +  +L   +   L  ++  + L      + 
Sbjct: 2   QSVSLIIQIFIVIAFGYFLGPKLSLNIRQFIFKILPYFSYILLTSVALELTLALDQINNP 61

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
           S ++ P LL+      GS+    I     +            E +K   S+   +N +K+
Sbjct: 62  STILPPALLIAFTTSFGSFFTCLIAYAIFDK-----------ESVKGKISLQLFINALKN 110

Query: 152 FVKIIL---VGTIITISLT--------ENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
             K  L   VG I+ I  T         +++ +L FI      + +  F        +++
Sbjct: 111 IAKAFLALTVGIILGILFTRLNIHISFNSWYLLLVFIFLIGIELAFTHFNRTWLSWKILI 170

Query: 201 LFIATL 206
           + +A  
Sbjct: 171 VPLAAF 176


>gi|153938803|ref|YP_001391316.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           F str. Langeland]
 gi|152934699|gb|ABS40197.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           F str. Langeland]
 gi|295319345|gb|ADF99722.1| PTS system, fructose family, IIBC component [Clostridium botulinum
           F str. 230613]
          Length = 465

 Score = 36.3 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 17/181 (9%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           F      LI + F +    +   S  +  +A+  +    +   I+  +    ++ S    
Sbjct: 145 FVVAGGVLIAISFLWGIYSFEPKSVQYNPIAAMIKGIGGEAFAIIVPIFTAYIADSISGR 204

Query: 97  PGLLLFMMFGIGSYLIQRIPV------LNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           PG++   + G+ +       +          ++   FK++    G+ + +        +K
Sbjct: 205 PGMVAGFVGGLIANTTGSGFLGGIIAGFFAGYLMLYFKKL--LSGLPKQF------EGLK 256

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
           S   + ++G +IT  L       +  ++     ++       +   I++ + I  ++  D
Sbjct: 257 SIFILPIIGILITGVLMTLLGEPVAALN---KGVMAWLASLEQANPILLGIIIGCMSAFD 313

Query: 211 I 211
            
Sbjct: 314 F 314


>gi|301067325|ref|YP_003789348.1| hypothetical protein LCAZH_2289 [Lactobacillus casei str. Zhang]
 gi|300439732|gb|ADK19498.1| Predicted membrane protein [Lactobacillus casei str. Zhang]
          Length = 279

 Score = 36.3 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 66/194 (34%), Gaps = 13/194 (6%)

Query: 46  YLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSLSASRLVIPGLLLF 102
           +L   +   +  V  ++   L       +   + ++     L  L      +++ G L  
Sbjct: 81  FLYALYGALLAGVFEEVGRYLGLKFINKRIPTKSVTPETPFLYGLGHGGLEMILIGSLTM 140

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156
               + + LI    V  +    P+  R  L   +K++ +        +L+  + +    I
Sbjct: 141 FSNFMFAMLINGGKVNEMLEKVPASSRSVLNTQVKQLMATTGWTISLSLMERLLALAVQI 200

Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--YHAFFTVRKVLIMILLFIATLTVLDIGWS 214
            +  ++ I + +        +    H+ +    A   V  +   +   +  +  + +   
Sbjct: 201 ALSVVVWIIIMKRMRWFWLLLPIGLHAFIDFPAALTQVGVLNGAVEEVLLVVQTILVLAF 260

Query: 215 YHQWYSKLK--MSK 226
            + ++ + +  M++
Sbjct: 261 TYWFWRQNRQVMTR 274


>gi|258650787|ref|YP_003199943.1| major facilitator superfamily protein [Nakamurella multipartita DSM
           44233]
 gi|258554012|gb|ACV76954.1| major facilitator superfamily MFS_1 [Nakamurella multipartita DSM
           44233]
          Length = 524

 Score = 36.3 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 18/193 (9%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL 99
           ++A    L FF +  + +  S L  L     QR+L   +  ++       +A   ++ G 
Sbjct: 126 LIAARAALGFFGAMLMPATLSLLRNLFVDRQQRRL---AIAIWAAGFSGGAALGPIVGGF 182

Query: 100 LL---------FMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
           LL          M   +   L+   P+       P+  R+ L      + ++  LV  +K
Sbjct: 183 LLEHYWWGSAFLMAVPVLVLLLILAPIFVPESKDPNPGRLDLVSIALSLLTMAPLVYAIK 242

Query: 151 SF----VKIILVGTIITISLTENYFTMLDFISANPHSI--LYHAFFTVRKVLIMILLFIA 204
           +     +  + +G +    L  + F        NP     L+        VL  +L   A
Sbjct: 243 AVAHDGISTLAIGLVAVGLLAGSAFVRRQLTRPNPMLDVRLFRRSAFTGAVLANLLAVFA 302

Query: 205 TLTVLDIGWSYHQ 217
            +  L     + Q
Sbjct: 303 LVGFLFFVAQHLQ 315


>gi|194206366|ref|XP_001492285.2| PREDICTED: transient receptor potential cation channel, subfamily
           M, member 1 [Equus caballus]
          Length = 1655

 Score = 36.3 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 267 EVKLRRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 326

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 327 G-RASDILSFAHKY 339


>gi|297243639|ref|ZP_06927570.1| histidine kinase sensor of two-component system [Gardnerella
           vaginalis AMD]
 gi|296888390|gb|EFH27131.1| histidine kinase sensor of two-component system [Gardnerella
           vaginalis AMD]
          Length = 755

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 79/211 (37%), Gaps = 15/211 (7%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV-FLLTHLSLSA 91
           +    +  +  ++++  +       ++S     L+     ++  ++ +V F+    S + 
Sbjct: 424 DIIYAAPWIVLMLFVPTYDFILGDGMSSQYFDSLSLEIFYRVFTLATMVPFMFRRKSPTT 483

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
             +V        +  + + L   + +       PS    ++  G KR +   + +  ++S
Sbjct: 484 CAIVAAIFSAIQLIFLPNILFANLFI-------PSIIYAAVLYGKKRAWQWISAIVLLES 536

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            +  + +G            T + F ++N  +  ++    +  V ++    +A +    I
Sbjct: 537 AIFALKIGIASRNIPKNA--TPIQFFTSNIDTTNFYIIMQMASVGLVFGFAVALICFTVI 594

Query: 212 GWSYHQWYSK-----LKMSKQEIKDEIKQSY 237
            ++Y++         LK  + E++ E KQ  
Sbjct: 595 AFAYYRRNDDNNLLLLKTRRTELEQEQKQLE 625


>gi|254881882|ref|ZP_05254592.1| ABC transporter [Bacteroides sp. 4_3_47FAA]
 gi|319641115|ref|ZP_07995818.1| ABC transporter [Bacteroides sp. 3_1_40A]
 gi|254834675|gb|EET14984.1| ABC transporter [Bacteroides sp. 4_3_47FAA]
 gi|317387246|gb|EFV68122.1| ABC transporter [Bacteroides sp. 3_1_40A]
          Length = 770

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 29  PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLS 88
             S      S   A  I+ +F F  GI  + S +  L      + L  I  ++ +     
Sbjct: 307 AKSIGVHKCSGASAINIFSMFLFETGIVVLMSVIVALFIIFNTKDL--IEDLLSVQLSSL 364

Query: 89  LSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSLREGIKRIYSINNLVN 147
            +   L +P L++F++F +   L  R  + +   V   F+R    ++G KR         
Sbjct: 365 FTLETLWVPILIVFVLFIVAGVLPGR--LFSRIPVTQVFRRYTDGKKGWKRSL------- 415

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFT 191
               F+ +  V  I+ +SL + +  +   +      ++    + 
Sbjct: 416 LFVQFMGVSFVMGILLVSLMQYHHLINSDMGIRTPGLVEAETWM 459


>gi|257077449|ref|ZP_05571810.1| predicted protein [Enterococcus faecalis JH1]
 gi|294779630|ref|ZP_06745021.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1]
 gi|256985479|gb|EEU72781.1| predicted protein [Enterococcus faecalis JH1]
 gi|294453287|gb|EFG21698.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1]
          Length = 683

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A    + +E    +   + +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQTFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|119597815|gb|EAW77409.1| transient receptor potential cation channel, subfamily M, member 7,
           isoform CRA_d [Homo sapiens]
          Length = 820

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|257091160|ref|ZP_05585521.1| predicted protein [Enterococcus faecalis CH188]
 gi|312902625|ref|ZP_07761830.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635]
 gi|256999972|gb|EEU86492.1| predicted protein [Enterococcus faecalis CH188]
 gi|310633963|gb|EFQ17246.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635]
 gi|315163292|gb|EFU07309.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0645]
 gi|315578984|gb|EFU91175.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0630]
          Length = 683

 Score = 36.3 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A    + +E    +   + +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLILVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQTFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|33235690|dbj|BAC80202.1| melastatin 1 splicing variant [Homo sapiens]
          Length = 230

 Score = 36.3 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|330958748|gb|EGH59008.1| histidine kinase, HAMP region: chemotaxis sensory transducer
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 598

 Score = 36.3 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHA-----FFTVRKVLIMILLFIAT 205
           S   +++V  ++          ++  +   P               +   +++  LF   
Sbjct: 25  SLFLLVVVSALLYWVALSIRADIMLQLRGTPMDAAALGQIQSRLDLLSNAILLSTLFTLV 84

Query: 206 LTVLDIGWSYHQWYSK-LKMSKQEIKDEIKQSYGN 239
           +    + +  H      L M++    +E+    G+
Sbjct: 85  MVSFMVWYFRHLIVRPVLSMTR--ALEEVASGEGD 117


>gi|225075640|ref|ZP_03718839.1| hypothetical protein NEIFLAOT_00656 [Neisseria flavescens
           NRL30031/H210]
 gi|224953062|gb|EEG34271.1| hypothetical protein NEIFLAOT_00656 [Neisseria flavescens
           NRL30031/H210]
          Length = 383

 Score = 36.3 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 21/178 (11%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
           LF ++LA  I  LF     +YS        L + T   +   + +  +      +A+++ 
Sbjct: 22  LFFAMLAIYIMSLFL----LYSADGQEFGQLENKTIHTVLGFALLWIIAVFKPQTAAKVA 77

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +P  ++ ++  IG  +       +   +   F R+   E                  +KI
Sbjct: 78  LPVYIVGVLLLIGVEVAGVTVNGSTRWLSLGFTRIQPSE-----------------IMKI 120

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
            +  T+                      IL      +++  +     I    +  I +
Sbjct: 121 GIPMTVAWYFQRYEGRLKWIHYIVALVLILVPVALILKQPDLGTAALIMASGIFVIFF 178


>gi|73666918|ref|YP_302934.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Ehrlichia
           canis str. Jake]
 gi|72394059|gb|AAZ68336.1| NADH dehydrogenase subunit A [Ehrlichia canis str. Jake]
          Length = 123

 Score = 36.3 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE-GIKRIYSINNLVNFMKSFVK 154
           +P L+   + G  S+L   +P+L L    P  +++S  E G   + S   + +     V+
Sbjct: 11  VPVLIFLAVAGFISFLFAVLPML-LAKCNPDLEKLSPYECGFAPLGSSRKIFD-----VR 64

Query: 155 IILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
             LV  +  I         L+     P SI            +MI L I T+  + 
Sbjct: 65  FYLVAILFIIF-------DLEIAFLFPWSICLSDIGVNGFWSMMIFLAILTVGFIY 113


>gi|311741494|ref|ZP_07715318.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303664|gb|EFQ79743.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 233

 Score = 36.3 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 214 SYHQWYSKLK--MSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEATSR 264
             +Q    +K  MSK E K E K+       +  ++   R   + +M E   R
Sbjct: 69  QRYQHRKDMKKSMSKDEWK-EYKKKE-----RQERQQANRE-QQARMAEGDPR 114


>gi|261289535|ref|XP_002604744.1| hypothetical protein BRAFLDRAFT_58873 [Branchiostoma floridae]
 gi|229290072|gb|EEN60754.1| hypothetical protein BRAFLDRAFT_58873 [Branchiostoma floridae]
          Length = 294

 Score = 36.3 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 12  EAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQ 71
           E+PS ++   A  EG   +  + ++FS  +   I      + GI+ +             
Sbjct: 13  ESPSPRRRRLA-EEGQVNLCVKYTIFSVNVIFWIVGGAVLAIGIWGMVEK---------- 61

Query: 72  RKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQ 113
               ++S  V  LT++  S   +V+  +L+F++ G+  +L+ 
Sbjct: 62  ---RNLSSGVARLTNVDNSVLAVVMDPMLIFVVVGLLIFLLS 100


>gi|327242739|gb|AEA41103.1| para-like sodium channel [Stomoxys calcitrans]
          Length = 1759

 Score = 36.3 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 42/141 (29%), Gaps = 19/141 (13%)

Query: 44   LIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPG----- 98
               +       +     D+H+      Q  L  +  I  ++  L +    L +       
Sbjct: 930  TAVITMILMSSLALALEDVHLPERPVMQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT 989

Query: 99   ---------LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN----NL 145
                     +++  +    + L     +     ++ + + +     + R+  +      L
Sbjct: 990  NAWCWLDFVIVMVSLINFVASLAGAGGIQAFKTMR-TLRALRPLRAMSRMQGMRVVVNAL 1048

Query: 146  VNFMKSFVKIILVGTIITISL 166
            V  + S   ++LV  I  +  
Sbjct: 1049 VQAIPSIFNVLLVCLIFWLIF 1069


>gi|327404162|ref|YP_004345000.1| O-antigen polymerase [Fluviicola taffensis DSM 16823]
 gi|327319670|gb|AEA44162.1| O-antigen polymerase [Fluviicola taffensis DSM 16823]
          Length = 464

 Score = 36.3 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 45/223 (20%)

Query: 46  YLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA--------SRLVIP 97
            + +F+ P ++   + L+ L      R L D+     LL  L ++A         ++ + 
Sbjct: 32  AIRYFWIPCLFLFLAGLNKLFNGHELRSLRDLYSSFMLLPFLLITARGIFSIRVFKVAVI 91

Query: 98  GLLLFMMFGIGSYLIQRIPVLNL-NHVKPSFKRVSL----REGIKR---IYSINNLVNF- 148
            +++    GI  Y  +        N+    F  +S+      G      I+ +  L+   
Sbjct: 92  FVIIECFVGILEYYFKTRSFFVPLNNESMIFNDISIYGTRVFGFATNSPIFGLRCLIALF 151

Query: 149 ----------MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL-- 196
                     +K   K+IL   +I           L F S     + ++   ++R+++  
Sbjct: 152 ILEFIPWKRYLKWIFKVILFLGVIVSFNRSVVICCLVFYSLQFVQLAWNQRHSLRQLVRN 211

Query: 197 ------IMILLFIATLTVLDIGWSYHQWYSKLK-MSKQEIKDE 232
                 ++  + +A +   D           +K M++  +K E
Sbjct: 212 KYFYDSLVTFILLALVFGSDFM---------MKGMNRDGVKRE 245


>gi|126635483|dbj|BAF48469.1| melanocortin 1 receptor [Pan paniscus]
 gi|332150742|dbj|BAK20445.1| melanocortin 1 receptor [Pan paniscus]
 gi|332150744|dbj|BAK20446.1| melanocortin 1 receptor [Pan paniscus]
 gi|332150746|dbj|BAK20447.1| melanocortin 1 receptor [Pan paniscus]
          Length = 317

 Score = 36.3 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLH---VLLASATQRKLEDISHIVFLLTHLSL 89
           +    SS+L+ L +L         S+   L    ++     +R +  I     L + L +
Sbjct: 121 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAIAAIWVASVLFSTLFI 180

Query: 90  S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
           +          LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 181 AYCDHTAVLLCLVVFFLAVLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HQGFGL 237

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 238 KGAVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 289

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 290 NAIIDPLIYAF----HSQELRRTLKEV 312


>gi|163839911|ref|YP_001624316.1| oligopeptide transporter, permease protein [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953387|gb|ABY22902.1| oligopeptide transporter, permease protein [Renibacterium
           salmoninarum ATCC 33209]
          Length = 511

 Score = 36.3 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 60/212 (28%), Gaps = 21/212 (9%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           +  +           +F+ +  +    +          Q  +  I  +  +   + ++ +
Sbjct: 137 DYGVTFMTFLFFSLPIFWAAVLLKEFGAISFNTFLQDPQIPIGVILVVAVIFGLIGMAVA 196

Query: 93  RLVIPG-LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR-EGIKRIYSINNLVNFMK 150
           R       + F    +   L+     L      P    V +   G+   + I  L   +K
Sbjct: 197 RGAWKKRWIAFGGTAVVVALVLGYISLTGWLKTPGLGPVVIAASGVGIAFGITALTAGLK 256

Query: 151 ------SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL-------- 196
                 S + ++++G I   +L          +      +       V            
Sbjct: 257 NRKALYSSLVVVVIGLICYYALQPLLSDATFLMVVILAIVAILVGVAVGYFFGGYDRAQN 316

Query: 197 ----IMILLFIATLTVLDIGWSYH-QWYSKLK 223
                +    +A L +LD       Q+Y +++
Sbjct: 317 MRAAALTAFLVAALVLLDRFMQSWPQYYDQVR 348


>gi|149409580|ref|XP_001506335.1| PREDICTED: similar to polymerase (RNA) I polypeptide B, 128kDa
           [Ornithorhynchus anatinus]
          Length = 738

 Score = 36.3 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 27  NAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTH 86
             P  R+      +L     L +     +      L   L+  +      ++ I+ +L  
Sbjct: 445 QLPQDRD-DFVLGVLNFFFILYYLLETVMKIFALGLKGYLSFPSNVFDGLLTGILLVLEI 503

Query: 87  LSLSASRLVIPG----LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
            +L+  R   PG    +L  +     + L+    V     + P+ K +SL          
Sbjct: 504 STLAVYRFPHPGWKPEMLGLLSLWDMARLVNMFIVFRFLRIIPNMKLMSLVAS------- 556

Query: 143 NNLVNFMKSFVKIILVGTIITISL 166
             L++ +K+      +  ++    
Sbjct: 557 -TLLDLVKNLRAFAGILVVVYYVF 579


>gi|139438447|ref|ZP_01771963.1| Hypothetical protein COLAER_00953 [Collinsella aerofaciens ATCC
           25986]
 gi|133775986|gb|EBA39806.1| Hypothetical protein COLAER_00953 [Collinsella aerofaciens ATCC
           25986]
          Length = 333

 Score = 36.3 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 29/163 (17%)

Query: 175 DFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKDEIK 234
             +      +L H    + ++   I+     +  +    S+ +  ++L+  + ++ D I 
Sbjct: 135 RLVEPALLGLLGHLPVLIVRLSAFIVAVAMMVDAVCSLASWRRLSNQLERVRADLADRIN 194

Query: 235 QSYGNPIIKNRQKSIARSRIRHKMMEATSRATIIITNPTHY---AL----------ALRY 281
           +S  +                  M+E    +TI     TH    A+          AL  
Sbjct: 195 ESLAD--------------ASDSMLERIPDSTIDSVAQTHIRSRAVNGWLAELGDAALDA 240

Query: 282 IQTENDAPVLVAKGQNLIAKKMRKIAYEHNIPIFEEPSLARSL 324
           ++ +   P  +A G   +A   R++A     P    PSL+R L
Sbjct: 241 LREKASMPTFIADGARGLALAARRVADAA--PNMPRPSLSRRL 281


>gi|315282568|ref|ZP_07870953.1| polysaccharide biosynthesis family protein [Listeria marthii FSL
           S4-120]
 gi|313613786|gb|EFR87545.1| polysaccharide biosynthesis family protein [Listeria marthii FSL
           S4-120]
          Length = 537

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 69/196 (35%), Gaps = 11/196 (5%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA---- 91
                      L+      +       H +  SA  + +E ++ IVFLL    +      
Sbjct: 126 TTVIRAVSFALLIIPVMSLLRGYFQGFHSMGPSAVSQVIEQVARIVFLLASTYIVLHVLN 185

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIK-RIYSINNLVNFMK 150
             LV    L      +G++      +      KP  +++      K R+ + + L     
Sbjct: 186 GSLVTAMSLATFAAFVGAFFSLICLIWYYRKRKPDIQKMIAGSNNKLRVSTFHLLKEISI 245

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHS------ILYHAFFTVRKVLIMILLFIA 204
           S V  I+VG  +++    + FT    ++ +  +      +L    F+V+K++++      
Sbjct: 246 SAVPFIIVGMAMSLYQQIDLFTFARILTYDGMAGKTAEDLLSIFNFSVQKIIMIPGTLAL 305

Query: 205 TLTVLDIGWSYHQWYS 220
             ++  +      ++ 
Sbjct: 306 AFSMTLVPLVAAAFHK 321


>gi|313892130|ref|ZP_07825723.1| putative Na+/H+ antiporter NhaC [Dialister microaerophilus UPII
           345-E]
 gi|313119268|gb|EFR42467.1| putative Na+/H+ antiporter NhaC [Dialister microaerophilus UPII
           345-E]
          Length = 460

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 18/202 (8%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLA------SATQRKLEDISHIVFLLTHL 87
             L   +L   +      +  I +V    + +++      +A    + +   I    T +
Sbjct: 74  VPLIIFMLIGTLVASLIAAGTIPTVVVYGYKIISAKYLPVTAFIICIAEGLTIGSSFTTI 133

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
           S     L+  G +  +     +  I        N++ P     +L   I  I    +L N
Sbjct: 134 STMGVVLITLGRISEIPDAYIAGAIVSGAFFA-NNMSPLADVPNLCSAIGEIPLSKHLRN 192

Query: 148 FMKSFVKIILVGTIITISLTEN-----------YFTMLDFISANPHSILYHAFFTVRKVL 196
             KS + ++++  II + L  +             ++  F   +P +++      +    
Sbjct: 193 LAKSTLPVLVISIIIYVILGGSANEVSGGIAETIQSLNKFFFVSPITLVPILLIFIASWR 252

Query: 197 IMILLFIATLTVLDIGWSYHQW 218
            +  +    + ++     Y  +
Sbjct: 253 KLPAIASLLIGIISALIIYVFF 274


>gi|212634709|ref|YP_002311234.1| hypothetical protein swp_1887 [Shewanella piezotolerans WP3]
 gi|212556193|gb|ACJ28647.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 464

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 20/140 (14%)

Query: 34  ASLFSSILACLIYLLFFFSPGI--YSVTSDLHVLLAS-ATQRKLEDISHIVFLLTHLSLS 90
            +    I+     LL F+SPGI    +T  + +++A  A Q      + +  L+  + L 
Sbjct: 265 IAYILMIIGVYGLLLEFYSPGIGVAGITGAISLIIALYAFQMLPLSYAGLALLMLGIVLL 324

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMK 150
            +  ++P   +F + GI ++++  I + +    +P F+ VS                 + 
Sbjct: 325 ITESMVPSFGIFGVGGIAAFVVGSIFLFDT--PQPQFQ-VSPI--------------LIA 367

Query: 151 SFVKIILVGTIITISLTENY 170
           S   I L+  +  +      
Sbjct: 368 SIAFISLLFFVFALGFILRM 387


>gi|220931298|ref|YP_002508206.1| hypothetical protein Hore_04530 [Halothermothrix orenii H 168]
 gi|219992608|gb|ACL69211.1| hypothetical protein Hore_04530 [Halothermothrix orenii H 168]
          Length = 231

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
           S     + I G +  +++GI + +     +++LN  +    +  +  G+KR +    +  
Sbjct: 50  SQLFFSIFISGFVYLIIYGINNIITSLPFLVSLNCPRKVVAKNIIFTGLKRSF----IFT 105

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
            +  F+K+I+ G +IT S   + F M    +      +      V    I  L+ + +L 
Sbjct: 106 LLILFIKVIVFGRVITDSYAVSAFGMDLTSNTPGDIFVIALLLYVALNFINSLITLISLL 165

Query: 208 VLDIGWSY 215
            +  GW Y
Sbjct: 166 GVRYGWQY 173


>gi|228933266|ref|ZP_04096122.1| Branched-chain amino acid ABC transporter, permease [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826427|gb|EEM72204.1| Branched-chain amino acid ABC transporter, permease [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 286

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 70/184 (38%), Gaps = 11/184 (5%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +   S++  L+ +L F   G+++  +   V L + T   +  +   V +   L     R
Sbjct: 21  LASGLSLIFGLMSVLNFAHGGLFAWGAFTGVWLFNMTGSYVLALIGAVAMGMFLGFILER 80

Query: 94  LVIPGL----LLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
            +I  +    +  ++  +G  L+    +       P   ++ L   ++  ++   ++  +
Sbjct: 81  FLIRPVYGNHVRQLLVTLGGMLVLSECIKVFWGPNPIGAKLPL--WLQGSFTFGGVI-LI 137

Query: 150 KSFVKIILVGTIITISLTENY----FTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
           K  + +IL+G II ++L          ++         ++      V+ +   + L  A 
Sbjct: 138 KYRLFVILIGIIIYVALLVLLKKTKIGLMIRAGVMDKEMIQALGINVKAIFSFVFLLGAG 197

Query: 206 LTVL 209
           +  L
Sbjct: 198 MAAL 201


>gi|146296878|ref|YP_001180649.1| rod shape-determining protein RodA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410454|gb|ABP67458.1| cell elongation-specific peptidoglycan biosynthesis regulator RodA
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 369

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 7/193 (3%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF------LLTHLSL 89
           +   IL C+I      S      T    ++++      L  +   VF      +LT+  +
Sbjct: 18  IVLMILLCIIGFGLIASASNILDTGKYKLVVSQVIWFCLGFVLFFVFSIIDYRILTNFYV 77

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP-SFKRVSLREGIKRIYSINNLVNF 148
               ++I  LL   + GI     QR   +     +P    ++ +     ++ S+   +N 
Sbjct: 78  IIYLIMIGLLLYVDINGINVLGGQRWIKIGPLSFQPSEISKLLMVIFFAKVVSMQENINA 137

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
            ++  K++    I  I + +        +       +        +   + +  +A    
Sbjct: 138 FENLAKVLFFAIIPIIFVLKQPDLGTASVFVAIIVTILFVAGLSLRYFYIAMGALAVFIP 197

Query: 209 LDIGWSYHQWYSK 221
           +   +    +   
Sbjct: 198 IAWEFILLDYQKD 210


>gi|88800113|ref|ZP_01115682.1| hypothetical protein MED297_09176 [Reinekea sp. MED297]
 gi|88777094|gb|EAR08300.1| hypothetical protein MED297_09176 [Reinekea sp. MED297]
          Length = 507

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 22/208 (10%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           + S    +LA + Y   F       + +   V    AT      ++        L+++A 
Sbjct: 55  DPSAALILLAGVYYGAIFGGSTSSILINAPGVAGTVATSFDGYPMARDGKAGKALTIAAI 114

Query: 93  RLVIPG-LLLFMMFGIGSYLIQRIPVLN----LNHVKPSFKRVSLREGIKRIYSINNLVN 147
                G +   ++ G    L+Q   + +       +      ++   G  ++        
Sbjct: 115 ASFTGGTIGAVLLMGFAPALVQVALLFHSAEYFALMVLGLSAIAAFAGRGQVSKA----- 169

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
                + +  +G ++      + F M  F        L      +   + M  L  A L 
Sbjct: 170 -----LMMTCLGLMLATVGESSLFQMPRFTMGLMD--LQSGIGFITLAMAMFALPEAILL 222

Query: 208 VLD-----IGWSYHQWYSKLKMSKQEIK 230
           +LD              S+L+++K E K
Sbjct: 223 ILDKTRSKTPDQQQNEISQLRITKDEAK 250


>gi|224499032|ref|ZP_03667381.1| hypothetical protein LmonF1_04743 [Listeria monocytogenes Finland
           1988]
          Length = 650

 Score = 36.3 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%)

Query: 35  SLFSSILACLIYLLFFFSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             FS + A   +LL       + ++ S L ++L    ++   +      L+  L      
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAILSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFMK 150
           +V   + +  +  + S  +      +   + P   +++L         I+S+N LV    
Sbjct: 232 MVAEKVGVNGILAVVSGGMVH--SFSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV---- 285

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                IL+GT +   L   +             I+   F  +    + IL F
Sbjct: 286 ----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333


>gi|294712586|ref|NP_001171025.1| transient receptor potential cation channel subfamily M member 7
           [Taeniopygia guttata]
          Length = 1825

 Score = 36.3 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 22/101 (21%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K+I   RI  ++ +      ++    P      L ++Q     PV+V +G 
Sbjct: 259 EVKLRRELEKTINLQRIHARIGQGVPVVALVFEGGPNVILTVLDFLQESPPVPVVVCEGT 318

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIPPV 337
              A  +                    + KQ      +P  
Sbjct: 319 G-RAADILAY-----------------VHKQTEEGGNVPEG 341


>gi|169607915|ref|XP_001797377.1| hypothetical protein SNOG_07022 [Phaeosphaeria nodorum SN15]
 gi|111064553|gb|EAT85673.1| hypothetical protein SNOG_07022 [Phaeosphaeria nodorum SN15]
          Length = 384

 Score = 36.3 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 98  GLLLFMMFGIGSYL--IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
            +LL M+F IG+ +  I    +   +        V+L +G K   +   L     S VKI
Sbjct: 62  LMLLAMVFSIGTTILVIMASQLYGWDRHVWDLLPVTLEQGRKASLAGQTLFVLASSTVKI 121

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
            ++  +    +          +       L  A F V  V + +   + T T++D  
Sbjct: 122 SIL--VSYFRIAPEKSLFRKLVWGT--FALVFAAFVVFLVALWVQCMLVTSTMIDAF 174


>gi|84683344|gb|ABC61252.1| transient receptor potential cation channel subfamily M member 7
           [Equus caballus]
          Length = 178

 Score = 36.3 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 22/99 (22%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 5   EVRLRRELEKTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 64

Query: 297 NLIAKKMRKIAYEHNIPIFEEPSLARSLFKQVPINSAIP 335
              A                   L   ++KQ      +P
Sbjct: 65  GRAA------------------DLLAYIYKQTEEGGNLP 85


>gi|332262621|ref|XP_003280360.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1 isoform 1 [Nomascus leucogenys]
          Length = 1642

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ E   PV++  G 
Sbjct: 262 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVICDGS 321

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 322 G-RASDILSFAHKY 334


>gi|326795401|ref|YP_004313221.1| hypothetical protein Marme_2142 [Marinomonas mediterranea MMB-1]
 gi|326546165|gb|ADZ91385.1| protein of unknown function DUF214 [Marinomonas mediterranea MMB-1]
          Length = 818

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 37/229 (16%)

Query: 10  KTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASA 69
           KT   + K++                    I    + +LFF    I  +   L   +   
Sbjct: 287 KTMGATPKRLTK------------------ITVYQLGVLFFIGAAIGLLLGFLIQFVIGL 328

Query: 70  TQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR 129
             + L  I         L L  +   +  +   +   + + LIQ  P+  LN   P F+ 
Sbjct: 329 LLQDLMSIELPAPDFGKLWLGVATGFVSLIAFCVP--LMARLIQVSPLSVLNPSAP-FQA 385

Query: 130 VSLREGIKRIYSINNLVN------------FMKSFVKIILVGTIITISLTENYFTMLDFI 177
            +L   +  +  +  L+             F+   V  +++G +                
Sbjct: 386 NALAIYVAGLVGMYALMFIYTGGIALPTIMFLSIVVIALVIGGLGYCLFRFGRAQTKGAT 445

Query: 178 SANPHSILYHAFFTVRKVL-IMILLFIATLTVLDIGWS---YHQWYSKL 222
           +     +       +  +  +++   I  L ++  G        W  +L
Sbjct: 446 TGWQIGLASLYRRLLSNLFQLLVFTVILMLGLILYGIQANLISDWQKQL 494


>gi|119913489|ref|XP_606035.3| PREDICTED: transient receptor potential cation channel, subfamily
           M, member 6 [Bos taurus]
          Length = 1670

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 246 QKSIARSRIRH----KMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++ + +         ++ +      +++   P   ++ L Y++ E   PV+V  G    A
Sbjct: 292 RRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVVCDGSG-RA 350

Query: 301 KKMRKIAYEH 310
             +   A+++
Sbjct: 351 SDILSFAHKY 360


>gi|313502276|gb|ADR63151.1| cytochrome b [Mesocriconema xenoplax]
 gi|313502278|gb|ADR63152.1| cytochrome b [Mesocriconema xenoplax]
          Length = 237

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 64  VLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHV 123
           +   S + +++ +I  ++FL   +      ++I   + F    + + L+  +P + LN V
Sbjct: 64  LFFFSFSLKEVWNIGIMIFLFLMMESFLGYVLIWSQMSFWACTVITSLLMILPFIGLNLV 123

Query: 124 KPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF-TMLDFISANPH 182
              +    +     +++ I + +  +      +L+   + +    NY  T   +++    
Sbjct: 124 FWVWSNFFVSLLTLKLFFILHFIFPL-----FLLIMVFLHLFFLHNYGSTSKIYLNGFFD 178

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSK 226
            I +  +F ++  L +IL+FI  + +L   + ++     L+M+ 
Sbjct: 179 KITFFPYFWLKDFLNLILVFIIFVFILFYPYFFNDPEMFLEMNH 222


>gi|260910159|ref|ZP_05916836.1| AcrB/AcrD family multidrug resistance protein [Prevotella sp. oral
            taxon 472 str. F0295]
 gi|260635663|gb|EEX53676.1| AcrB/AcrD family multidrug resistance protein [Prevotella sp. oral
            taxon 472 str. F0295]
          Length = 1089

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 77/234 (32%), Gaps = 39/234 (16%)

Query: 32   REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRK-LEDISHIVFLLTHLSLS 90
            +  +       CL+++    S    S    L V+L+           + +      + + 
Sbjct: 889  QSNTTAIIFALCLVFVYLILSAQYESYLLPLSVILSLPFGLAGAFIFTQLFGHQNDIYMQ 948

Query: 91   ASRLVIPGLLLFMMFGIGSYLIQ---RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN 147
             + +++ GLL      I  + ++       +  + +  +  R+                 
Sbjct: 949  IALIMLIGLLAKNAILIVEFALERRRTGMAIKYSAILGAASRLRP--------------- 993

Query: 148  FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
                   I++ G  + I L    F     +  N +  L  A   V  +LI ++L I  + 
Sbjct: 994  -------ILMTGLAMVIGLLPMMFA--SGVGKNGNQTLGAA--AVGGMLIGMVLQIFVVP 1042

Query: 208  VLDIGWSYHQWYSKLKMSKQEIKDEIKQSYGNPIIKNRQKSIARSRIRHKMMEA 261
             L + +       + K S  E  DE      N  +K+  K  AR     K ++A
Sbjct: 1043 ALFVIFQ---HLQE-KFSPLEFGDEE-----NREVKSELKQYARQMAIEKDVKA 1087


>gi|257890465|ref|ZP_05670118.1| PTS system fructose specific IIBC component [Enterococcus faecium
           1,231,410]
 gi|257826825|gb|EEV53451.1| PTS system fructose specific IIBC component [Enterococcus faecium
           1,231,410]
          Length = 487

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 4/173 (2%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96
             +   ++  + F   GIYS   D     A+A   K+   + +  ++  L+   +  +  
Sbjct: 144 FVVAGGVLIAISFAVWGIYSFDPDHAQYNATAAMVKVVGDAAMGMMVPVLAAYIAEGIAK 203

Query: 97  -PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
            PGL++  + GI S       +  +     +   +   + +  I      ++ +K+    
Sbjct: 204 RPGLVVGFVGGIVSMNGGTGFLGGILAGFLAGYFILFLQKLLTILPKQ--LDGLKAIFLY 261

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
            ++G      +       +  I+    S L     +   VL +I+  +    +
Sbjct: 262 PVIGVAFIGIVMSLLAGPMKAINEGMMSFLAGFEHSNPLVLGVIVGCMCAFDM 314


>gi|239932117|ref|ZP_04689070.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291440487|ref|ZP_06579877.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291343382|gb|EFE70338.1| ABC transporter ATP-binding protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 840

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           SRE      +L     L           TS +  L+ S+  +  E    ++ +      +
Sbjct: 690 SREIPEEGLVLGGFTLLELSLPIMALGFTSMMFGLIISSLVKTAEKTMPLLVMF-----A 744

Query: 91  ASRLVIPGLLLFMMFGIG----SYLIQRIPVLNLNHVKPSFKRVSLRE 134
             ++V  G L  +   IG    S+L+     +  +     F R+S  E
Sbjct: 745 IIQVVFTGCLFTLHGSIGVNQFSFLMPSRWAVAASGATLDFNRISPPE 792


>gi|24584786|ref|NP_724039.1| gustatory receptor 36b [Drosophila melanogaster]
 gi|47116955|sp|Q9VJF2|GR36B_DROME RecName: Full=Putative gustatory receptor 36b
 gi|22946699|gb|AAF53597.2| gustatory receptor 36b [Drosophila melanogaster]
          Length = 391

 Score = 36.3 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 55  IYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGL-LLFMMFGIGSYLIQ 113
           IY+  +++ +L+           ++++F   +       +++ GL ++  +  + +  +Q
Sbjct: 41  IYAFMANIFILITIIYNFTAHGDTNLLFQSANKLHEYVIIIMSGLKIVAGLITVLNRWLQ 100

Query: 114 RIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTM 173
           R  ++ L         ++ +               +KS ++  ++         E     
Sbjct: 101 RGQMMQLVKDVIRLYMINPQ---------------LKSMIRWGILLKAFISFAIELLQVT 145

Query: 174 LDFISANPHSILYHAFFTVRKVLIMILLFIA---TLTVLDIGWSYHQWYSKLKMSKQEIK 230
           L   + +           V+  +  I+        L +L I   Y    +KL+M  +E +
Sbjct: 146 LSVDALDRQGTAEMMGLLVKLCVSFIMNLAISQHFLVILLIRAQYRIMNAKLRMVIEESR 205

Query: 231 D 231
            
Sbjct: 206 R 206


>gi|301754031|ref|XP_002912876.1| PREDICTED: c-C chemokine receptor type 1-like [Ailuropoda
           melanoleuca]
          Length = 495

 Score = 36.3 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 71/208 (34%), Gaps = 17/208 (8%)

Query: 34  ASLFSSILACLIYLLFF----------FSPGIYSVTSDLHVL-LASATQRKLEDISHIVF 82
            +L  S L  L  L F+          F  G   + S L+   L S     +        
Sbjct: 214 LNLAISDLLFLFTLPFWIDYKLKDDWVFRDGTCKLLSGLYYTGLYSEIFFIVLLTVDRYL 273

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
            + H   +     +   ++  +   G  ++  IP    +  +      +      R  ++
Sbjct: 274 AIVHAVFALRVRTVIFGVISSVGAWGLAILASIPGFYFSKTQRELSHTTCSLHFPR-GNL 332

Query: 143 NNLVNFMKSFVKIILVGTII-TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILL 201
                F    +K+ ++G ++  + +  +Y  ++  +   P+     A   +  ++I+  L
Sbjct: 333 KGWKQF--QALKLNMLGLVLPLLVMIISYTEIIRILLKRPNEKKAKAVRLIFVIMIVFFL 390

Query: 202 FIAT--LTVLDIGWSYHQWYSKLKMSKQ 227
           F     L VL   +    +  + + SKQ
Sbjct: 391 FWTPYNLAVLVSAFQDSLFTDECRQSKQ 418


>gi|297488033|ref|XP_002696651.1| PREDICTED: transient receptor potential cation channel, subfamily
           M, member 6-like [Bos taurus]
 gi|296475498|gb|DAA17613.1| transient receptor potential cation channel, subfamily M, member
           6-like [Bos taurus]
          Length = 1670

 Score = 36.3 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 246 QKSIARSRIRH----KMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++ + +         ++ +      +++   P   ++ L Y++ E   PV+V  G    A
Sbjct: 292 RRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVVCDGSG-RA 350

Query: 301 KKMRKIAYEH 310
             +   A+++
Sbjct: 351 SDILSFAHKY 360


>gi|15893519|ref|NP_346868.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15023060|gb|AAK78208.1|AE007535_10 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325507637|gb|ADZ19273.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 634

 Score = 36.3 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 19  IEDALNEGNAP------ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQR 72
           +  A  +          +S+E   + + +   I ++  F  GI       + +       
Sbjct: 80  LTKARKK-EFATYMLLGMSKEQVAWLNFIENFIIMIVAFLTGII-FGVVFNKVFVMLLFA 137

Query: 73  KLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSL 132
            +      VF  +  +   S +V   L++F++  + SYLI     L            + 
Sbjct: 138 LMRTAGRAVFQFSFKAFEISSIV--FLVIFLIISLQSYLIICKSKL--------IDMFNA 187

Query: 133 REGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTV 192
            + I++   I + +  + S + +I +G    I++ +    +   IS  P ++L  +  T+
Sbjct: 188 AKKIEKGLKI-SFITLVMSIIAVICIGYGYYIAIKK----LGYKISLAPEAVLLISVGTI 242

Query: 193 RKVLIMILLFIATL 206
                +I + I  +
Sbjct: 243 LFFSAIIAVAIDLM 256


>gi|307700600|ref|ZP_07637632.1| putative membrane protein [Mobiluncus mulieris FB024-16]
 gi|307614245|gb|EFN93482.1| putative membrane protein [Mobiluncus mulieris FB024-16]
          Length = 458

 Score = 36.3 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 61/184 (33%), Gaps = 9/184 (4%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +L ++I   +  L FF   G   +      LL    +  + +     ++     + A  
Sbjct: 240 LNLVAAIFISVFCLFFFLKDG-RRIWVWFMRLLPVPFREPVHEAGIRGWITLKGYIKAQA 298

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV-----NF 148
           +V     +F+   IG+  +    +     +           G     +I  LV       
Sbjct: 299 MVAGVDAVFI--SIGAAFLGAGSMTIPLALLIFLASFIPIVGAVSTGAIAVLVILLDQGL 356

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           +K+ + ++++  +     +     +L   + N H ++     TV      I+  +  + +
Sbjct: 357 VKAIIMLVVILAV-QQIESNVLQPLLMSNAVNIHPLVVLLAITVGGYFASIIGALLAVPI 415

Query: 209 LDIG 212
           +   
Sbjct: 416 VAFL 419


>gi|291532904|emb|CBL06017.1| Phosphate/sulphate permeases [Megamonas hypermegale ART12/1]
          Length = 333

 Score = 36.3 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 26  GNAPISREASLFSSILACLIYLLFF--FSPGIYSVTSDLHVLLASATQRKLEDISHIVFL 83
           G+   S E      I+A LI  + +  F+  I   +S  H L+       L     I   
Sbjct: 69  GDIVKSAEHIDEHIIVAALIGAIVWNLFTWWIAMPSSSSHALVGGIIGAVLVSTGAIGLN 128

Query: 84  LTHLSLSASRLVI-PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
              +      L++ P + + + F I +           + +   FKR+ +       +S
Sbjct: 129 FWGIGKIVLSLILSPIIAIVVGFIIMNIFYLLFGKFRPSSLNNKFKRMQIITAATMAFS 187


>gi|239625416|ref|ZP_04668447.1| H(/)-transporting two-sector ATPase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519646|gb|EEQ59512.1| H(/)-transporting two-sector ATPase [Clostridiales bacterium
           1_7_47FAA]
          Length = 430

 Score = 36.3 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 74/223 (33%), Gaps = 33/223 (14%)

Query: 30  ISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSL 89
            S E    + I+A     +      I  + + +   +       L   +  V +   +++
Sbjct: 2   KSIEKQSPARIIALGFLAVILTGSFILMLPACVKPGVDLHYVDALFTSTSAVCVTGLIAV 61

Query: 90  SASRLVIPG-----LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
             +            LL  + G+G   +    +L L       +R+ ++E +  + S   
Sbjct: 62  DTADTFTAIGQTVVALLIQVGGLGVTSVGVGVILALGRRVNLKERLLIKEAL-NLDSGKG 120

Query: 145 LVNFMKSFVKIIL----VGTII-TISLTENYFTMLDFISANPHSILY------------- 186
           LV  +K+ +K+ L     G ++  +  + +Y  +     +  HS+               
Sbjct: 121 LVCLVKNVLKVTLCFEGAGVVLSYLVFSRDYPPIRALGISLFHSVAAFNNSGFDILGGLK 180

Query: 187 -------HAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
                       +    ++I   +  L ++DI     + + KL
Sbjct: 181 NLTGYKDDVLLNLTTAGLIIFGGLGFLVIMDIF--RKRSFKKL 221


>gi|118382644|ref|XP_001024478.1| hypothetical protein TTHERM_00298440 [Tetrahymena thermophila]
 gi|89306245|gb|EAS04233.1| hypothetical protein TTHERM_00298440 [Tetrahymena thermophila
           SB210]
          Length = 395

 Score = 36.3 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 34  ASLFSSILACLIYLLFF--FSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
            ++  S+   ++ +L           +   + + + S      + +    F   +     
Sbjct: 151 LAIAGSVFMGVMSMLNTNNSDDDQAQMLIGILLTVFSFFTFATQMVVEEKFFSQYYLHPF 210

Query: 92  SRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
             + I G     +  I   +   IPV N     P+         + +++S+ NLV F   
Sbjct: 211 QGVGIEGFWGIGITSIAIAIFNFIPVPNNFKAPPNGNMEDFPNFMYQVFSMQNLVLFFTF 270

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           F  II++  +  ++L                ++  +A   VR +L +   F+     L +
Sbjct: 271 FAYIIVILFVNGLAL----------------TVTKYASCIVRSLLNITSPFLVWAFCLAV 314

Query: 212 GWSYHQWYS 220
            W   QW+ 
Sbjct: 315 KWESFQWFQ 323


>gi|16804391|ref|NP_465876.1| hypothetical protein lmo2353 [Listeria monocytogenes EGD-e]
 gi|224503517|ref|ZP_03671824.1| hypothetical protein LmonFR_13592 [Listeria monocytogenes FSL
           R2-561]
 gi|254831222|ref|ZP_05235877.1| hypothetical protein Lmon1_07687 [Listeria monocytogenes 10403S]
 gi|255029795|ref|ZP_05301746.1| hypothetical protein LmonL_13354 [Listeria monocytogenes LO28]
 gi|16411841|emb|CAD00431.1| lmo2353 [Listeria monocytogenes EGD-e]
          Length = 650

 Score = 36.3 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%)

Query: 35  SLFSSILACLIYLLFFFSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             FS + A   +LL       + ++ S L ++L    ++   +      L+  L      
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAILSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFMK 150
           +V   + +  +  + S  +      +   + P   +++L         I+S+N LV    
Sbjct: 232 MVAEKVGVNGILAVVSGGMVH--SFSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV---- 285

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                IL+GT +   L   +             I+   F  +    + IL F
Sbjct: 286 ----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333


>gi|47096051|ref|ZP_00233653.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254826822|ref|ZP_05231509.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL N3-165]
 gi|254901121|ref|ZP_05261045.1| hypothetical protein LmonJ_14943 [Listeria monocytogenes J0161]
 gi|254914029|ref|ZP_05264041.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           J2818]
 gi|254938344|ref|ZP_05270041.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           F6900]
 gi|47015648|gb|EAL06579.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258599200|gb|EEW12525.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           FSL N3-165]
 gi|258610956|gb|EEW23564.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           F6900]
 gi|293592047|gb|EFG00382.1| sodium/hydrogen exchanger family protein [Listeria monocytogenes
           J2818]
          Length = 650

 Score = 36.3 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 14/172 (8%)

Query: 35  SLFSSILACLIYLLFFFSP-GIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             FS + A   +LL       + ++ S L ++L    ++   +      L+  L      
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAILSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFMK 150
           +V   + +  +  + S  +      +   + P   +++L         I+S+N LV    
Sbjct: 232 MVAEKVGVNGILAVVSGGMVH--SFSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV---- 285

Query: 151 SFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                IL+GT +   L   +             I+   F  +    + IL F
Sbjct: 286 ----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333


>gi|332262623|ref|XP_003280361.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1 isoform 2 [Nomascus leucogenys]
          Length = 1625

 Score = 36.3 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ E   PV++  G 
Sbjct: 245 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREEPPVPVVICDGS 304

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 305 G-RASDILSFAHKY 317


>gi|260558950|ref|ZP_05831137.1| PTS system protein [Enterococcus faecium C68]
 gi|293559791|ref|ZP_06676311.1| pts system fructose-specific eiibbc component [Enterococcus faecium
           E1162]
 gi|314950208|ref|ZP_07853493.1| phosphotransferase system, EIIC [Enterococcus faecium TX0082]
 gi|260075058|gb|EEW63373.1| PTS system protein [Enterococcus faecium C68]
 gi|291606274|gb|EFF35688.1| pts system fructose-specific eiibbc component [Enterococcus faecium
           E1162]
 gi|313643518|gb|EFS08098.1| phosphotransferase system, EIIC [Enterococcus faecium TX0082]
          Length = 487

 Score = 36.3 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 4/173 (2%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96
             +   ++  + F   GIYS   D     A+A   K  D + +  ++  L+   +  +  
Sbjct: 144 FVVAGGVLIAISFAVWGIYSSDPDHAQYNATAAMVKAVDDAAMGMMVPVLAAYIAEGIAK 203

Query: 97  -PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
            PGL++  + GI +       +  +     +   +   + +  I      ++ +K+ V  
Sbjct: 204 RPGLVVGFVGGIVAMNGGTGFLGGILAGFLAGYFILFLQKLLIILPKQ--LDGLKAIVLY 261

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
            ++G      +       +  I+    S L    ++   VL +I+  +    +
Sbjct: 262 PVIGVAFIGIVMSLLAGPMKAINEGMMSFLAGFEYSNPLVLGVIVGCMCAFDM 314


>gi|317127229|ref|YP_004093511.1| glycerophosphoryl diester phosphodiesterase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315472177|gb|ADU28780.1| glycerophosphoryl diester phosphodiesterase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 604

 Score = 35.9 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 23/186 (12%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
            S     ++   F F P I  + + +  L+ + +    E +  I      L        +
Sbjct: 20  LSFAFIYMLLTSFLFVPLISYIFNRMIKLMGTGSLLNAE-VYKIGSSFPGLMGMLLISFL 78

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
             L+LF+ FG+   + Q+                      KRIY    L+  M+ F KI+
Sbjct: 79  VSLILFLEFGVMILIAQQGYF------------------RKRIYVSQALITTMRKFPKIL 120

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVL----IMILLFIATLTVLDIG 212
             G    I +T  +   ++            A F   ++     + I +++  + +    
Sbjct: 121 GFGLFQIILITLLFIPFIELSVFPALLDFNIAIFLTSQLYGSSDLAIFIYLLIVILAIYL 180

Query: 213 WSYHQW 218
           +    +
Sbjct: 181 FIRFLF 186


>gi|269986885|gb|EEZ93162.1| hypothetical protein BJBARM4_0254 [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 744

 Score = 35.9 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 29  PISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE-DISHIVFLLTHL 87
             S   + F +I+  +I+ +      + S    +  + A  T   L  D   + F L   
Sbjct: 44  ANSPMYAGFFAIVMFIIFAIALDRTQLSSGRISISFIFALITFFILYTDPVLLHFFLNAF 103

Query: 88  SLSASRLVIPGLLLFM-------MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIY 140
            + A   ++ G+L+ +       + G+   L   + +      +      +       I 
Sbjct: 104 IVLAFIALVLGMLVLVKSPRSIKLIGLLIVLFLLMVLF-----ENDTSLTNSINSTLHI- 157

Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLD----FISANPHSILYHAFFTVRK-- 194
           S+ N++ F+   + +++   ++   +  +  T +     FI     ++L   F       
Sbjct: 158 SLLNILPFVFGMIAVLIFAVLLIKGIRNSRNTAVRVALLFIVFLMITLLIPGFAGFLFNP 217

Query: 195 -VLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
            VL  I + I    V+   +         K+ KQ IKD
Sbjct: 218 IVLTAIFVAIILAAVIYSQFGKIGRIKPSKLDKQYIKD 255


>gi|148675314|gb|EDL07261.1| mCG11829, isoform CRA_a [Mus musculus]
          Length = 525

 Score = 35.9 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 136 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 195

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 196 G-RASDILSFAHKY 208


>gi|325973369|ref|YP_004250433.1| hypothetical protein MSU_0519 [Mycoplasma suis str. Illinois]
 gi|323651971|gb|ADX98053.1| hypothetical protein MSU_0519 [Mycoplasma suis str. Illinois]
          Length = 165

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
           ++     +++ D S  ++L T L +    L IP + L +++ + S+     P ++ +   
Sbjct: 1   MIFFNNGQQMIDNSGDIYLATRLLMMFYWLTIPSIALILIWSLYSF-----PKMDWSKNF 55

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSI 184
           PSF R         I+    L   +   +  IL+      +L  N               
Sbjct: 56  PSFSRFFPYLKNLSIFGWVILGTLI--LINTILLVFYAIDTLALNNVDKYAVYWKYKVQE 113

Query: 185 LYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEI 229
                F    ++  IL +I  +   +  W  + + SKL +S +++
Sbjct: 114 RPVLSFFAVTIMGFILYWILAIVCYNTFWEKY-FNSKLNLSLKDL 157


>gi|301777500|ref|XP_002924168.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 1-like [Ailuropoda melanoleuca]
          Length = 1682

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 294 EVKLRRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 353

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 354 G-RASDILSFAHKY 366


>gi|282909461|ref|ZP_06317276.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283958928|ref|ZP_06376373.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282326731|gb|EFB57029.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789646|gb|EFC28469.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 363

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 14/211 (6%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +GN   S    L   +   +I +L   +  +Y + S +  ++ ++ Q    D +H+V
Sbjct: 109 AFKKGNYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLV 165

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
            +          +V+    +     +         + +         +  L  G K + +
Sbjct: 166 GIAITTQSIIIIVVLLIKAIITWLLLIPIF---NFMTSFVESTNDKVKTHLANGFKAMKN 222

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199
                   K+F K  +   ++ + +      +   IS N  S+       + +V  +I I
Sbjct: 223 GQ------KTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITI 276

Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +LF+    V+ +G   +      K++K ++K
Sbjct: 277 ILFVVIHAVILMGIVQYYLKRGQKITKDKVK 307


>gi|281341976|gb|EFB17560.1| hypothetical protein PANDA_013444 [Ailuropoda melanoleuca]
          Length = 1606

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 218 EVKLRRQLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGS 277

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 278 G-RASDILSFAHKY 290


>gi|229170433|ref|ZP_04298102.1| hypothetical protein bcere0007_53600 [Bacillus cereus AH621]
 gi|228613057|gb|EEK70213.1| hypothetical protein bcere0007_53600 [Bacillus cereus AH621]
          Length = 490

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 28/214 (13%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+FS +++  I++  F S            ++A         ++ + F   ++  S   
Sbjct: 10  LSIFSLLVSTAIFIQVFTSHSRRYFKKFYGGIIA---------VTLMFFSFPYMGFSYDL 60

Query: 94  LVIPGLLLFMMFG-------IGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV 146
            V+P +L F+ FG       + S +I RI  +      P    +           +  L 
Sbjct: 61  RVVPLILSFIYFGRIAGWITLISIIIMRIFYIGGYWEPPVIAYL----------GMGILF 110

Query: 147 NFMKSFVKII--LVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
              K++ K +       +  S+      ++               +    +LI + L  A
Sbjct: 111 TTFKTYFKNVNPFKSASLYFSVFVGIKWLVGVFFNTTLLYTQGLLYIALGLLIGLFLMEA 170

Query: 205 TLTVLDIGWSYHQWYSKLKMSKQEIKDEIKQSYG 238
              +  +     +   KLK SKQE+ D + +  G
Sbjct: 171 YQRLYYLTQDLSKMNRKLKKSKQELTDTVHELQG 204


>gi|229172057|ref|ZP_04299622.1| H(+)-transporting two-sector ATPase [Bacillus cereus MM3]
 gi|228611400|gb|EEK68657.1| H(+)-transporting two-sector ATPase [Bacillus cereus MM3]
          Length = 449

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 69/209 (33%), Gaps = 23/209 (11%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             +   +LA ++ ++    P +    S +      A    +  +S     +  +S + + 
Sbjct: 16  LIVLFYLLAVVVSVILLSFPFV--TKSGVKWTFIDALFTSVSAVSVTGLSVVTISDTFTT 73

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
             I  L L +  G    +     V  +   K   +R  L        +++ LV  M+S +
Sbjct: 74  AGIIMLALILQLGGLGIMALGTFVWIITGKKIGLQRRRLIMADHNQGNLSGLVELMRSIL 133

Query: 154 KII----LVGTIITISLTENYFTMLDF-----------------ISANPHSILYHAFFTV 192
            +I    L+G I+  +    YF                            S++ +    +
Sbjct: 134 IVIISIELIGAILLGTRFLLYFPTWQEAYFHGFFAAVSATTNGGFDLTGQSLIPYKKDYI 193

Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSK 221
            +++ M+L+ +  +    +      +  +
Sbjct: 194 VQMIHMLLIILGAIGFPVLMEIKQFFSKR 222


>gi|206895371|ref|YP_002247110.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206737988|gb|ACI17066.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 406

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 285 ENDAPVLVAK----GQNLIAKKMRKIAYEHNIPIFEEPSLAR 322
           + +AP +        ++  A  +R  A    +PI E+P LAR
Sbjct: 212 KAEAPKISEYLCPACKDHYAHVIRA-AKLFGVPIVEDPQLAR 252


>gi|126180096|ref|YP_001048061.1| abortive infection protein [Methanoculleus marisnigri JR1]
 gi|125862890|gb|ABN58079.1| Abortive infection protein [Methanoculleus marisnigri JR1]
          Length = 296

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 35/208 (16%)

Query: 29  PIS-----REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLE-------- 75
           P S     RE ++F  +   L  + +FF+    +  + L   + +     +         
Sbjct: 12  PRSPSTARREVTVFLVLAFALSSIGWFFTTRSTAAEALLLSTVFTMWCPGIAAVVTRLYY 71

Query: 76  --DISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSL 132
             ++    F +         + +P L+  ++FG        I   N       F      
Sbjct: 72  QRNLGGFGFRVGKTRWQMVAIFLPILVGLLIFGPV--WATGIGPFNPESAATVFSIGFIP 129

Query: 133 REGIKRIYSI----------NNLV--NFMK--SFVKIILVGTIITISLTENYFTMLDFIS 178
              +  I+S+            L+     K   F K+ L+ + I       +F ++ F  
Sbjct: 130 VFLVSIIFSLFAAAGEEIGWRGLLVPEMAKFMGFTKLALLSSAIWAVW---HFPLIIFSD 186

Query: 179 ANPHSILYHAFFTVRKVLIMILLFIATL 206
            +    L+++       ++     +A L
Sbjct: 187 YHGAGPLWYSLAVFVPSVMGAGFILAWL 214


>gi|311692959|gb|ADP95832.1| sensory box/FOG: EAL domain/GGDEF domain containing protein [marine
           bacterium HP15]
          Length = 1162

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 18/203 (8%)

Query: 28  APISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL 87
            P+S++ +L  ++   LI   F     +  V+  + ++ ++     +  +S +V  +   
Sbjct: 39  VPVSQDLTLAEAV--GLILAGFTLGVMVLGVSKPVRLVFSAVL--LIYSLSSLVQSVNIF 94

Query: 88  SLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS-INNL- 145
            +S    +  GLL  M   I +       +         ++      G   I + +  L 
Sbjct: 95  GVSGLFSIKVGLLPLMPAAIATLAGICCALGLTRRTLILWRLFGSIAGTVGILAILQGLG 154

Query: 146 VNFMKSFVKI-----ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
           V+   S ++I        G +  I++    + +   I     S+ Y A        +  +
Sbjct: 155 VSSFPSILQIPADQASFTGALFAIAIGVIAWMLARSIDRPAISLPYSAIGIGISGTLATV 214

Query: 201 LFIATLTVLDIGWSYHQWYSKLK 223
           + +  +  +D      +   +LK
Sbjct: 215 ILM-CVASID------RHEERLK 230


>gi|62432663|gb|AAX82900.1| melanocortin-1 receptor [Gorilla gorilla]
          Length = 316

 Score = 35.9 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSL 89
           +    SS+L+ L +L         S+   L           +R +  I     L + L +
Sbjct: 120 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYRSIVTLPRARRAVAAIWVASVLFSTLFI 179

Query: 90  S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
           +          LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 180 AYYDHTAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HKGFGL 236

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 237 KGPVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 288

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 289 NAIIDPLIYAF----HSQELRRTLKEV 311


>gi|332863420|ref|XP_510268.3| PREDICTED: transient receptor potential cation channel subfamily M
           member 1 isoform 4 [Pan troglodytes]
          Length = 1533

 Score = 35.9 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 153 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPVPVVICDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|228907050|ref|ZP_04070914.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL
           200]
 gi|228852554|gb|EEM97344.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL
           200]
          Length = 449

 Score = 35.9 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 68/209 (32%), Gaps = 23/209 (11%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             +   +LA ++ ++    P +      +      A    +  +S     +  +S + + 
Sbjct: 16  LIVLFYLLAVVVSVILLSLPFV--TKPSVKWTFIDALFTSVSAVSVTGLSVITISDTFTT 73

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
             I  L L +  G    +     V  +   K   +R  L        +++ LV  M+S +
Sbjct: 74  AGIIVLALILQLGGLGIMALGTFVWIITGKKIGLQRRRLIMADHNQGNLSGLVELMRSIL 133

Query: 154 KII----LVGTIITISLTENYFTMLDF-----------------ISANPHSILYHAFFTV 192
            +I    L+G I+  +    YF                            S++ +    +
Sbjct: 134 IVIISIELIGAILLGTRFSLYFPTWQEAYFHGFFAAVSATTNGGFDLTGQSLIPYKKDYI 193

Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSK 221
            +++ M+L+ +  +    +      +  +
Sbjct: 194 VQMIHMLLIILGAIGFPVLMEVKQFFSKR 222


>gi|169881259|ref|NP_061222.3| transient receptor potential cation channel subfamily M member 1
           isoform 1 [Mus musculus]
          Length = 542

 Score = 35.9 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|110680148|ref|YP_683155.1| hypothetical protein RD1_2948 [Roseobacter denitrificans OCh 114]
 gi|109456264|gb|ABG32469.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 503

 Score = 35.9 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 64/198 (32%), Gaps = 5/198 (2%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           + S    +LA + Y   F       + +   V    A+      ++        L+++A 
Sbjct: 55  DPSAALILLAGVYYGAIFGGSTSSILLNAPGVAGTVASSFDGFPMARQGKAGKALTIAAI 114

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSF 152
                G +  ++  + + ++  + +L  +    +        G+  I +        K+ 
Sbjct: 115 ASFAGGTIGAILLMVFAPMLSSVALLFHSAEYFALM----VVGLSAIAAFAGTGQVAKAI 170

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIG 212
           + + ++G I+        F M  F            F T+   +  +   +  +      
Sbjct: 171 M-MTVLGLIMATVGEGALFNMPRFTMGLMDLQSGFGFITLAMAMFALPEALFLVLKPRQS 229

Query: 213 WSYHQWYSKLKMSKQEIK 230
                    L++++QE +
Sbjct: 230 KESDGDIKDLRITRQEAR 247


>gi|313207221|ref|YP_004046398.1| amino acid/peptide transporter [Riemerella anatipestifer DSM 15868]
 gi|312446537|gb|ADQ82892.1| amino acid/peptide transporter [Riemerella anatipestifer DSM 15868]
          Length = 557

 Score = 35.9 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 74/201 (36%), Gaps = 18/201 (8%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           ++  +F + L  +I    FF P I ++  +L+       +   +   +I ++  ++    
Sbjct: 110 KDMPMFYTSLGLIIIGNGFFKPSISTLLGNLYS--EEPYKANKDAGYNIFYMGINIGAFV 167

Query: 92  SRLVIPGLL-------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR-EGIKRIYSIN 143
             ++   +         F+  G+G +L   I  L   H+  +   +    EG  +I +I 
Sbjct: 168 CNIIAAFMRNKFGWGEAFITAGVGMFLGLIIFSLGRKHIL-NANILKPVQEGDTKISAI- 225

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANPHSILYHAFFTVRKVLIMILL 201
                 K F+  ILVG +  +     +   +   FI A    I+++    ++        
Sbjct: 226 ----LTKVFLPAILVGVLGWVIPGNIFGADSTDAFIFACIPVIIFYVSLYIKANKEDKAP 281

Query: 202 FIATLTVLDIGWSYHQWYSKL 222
             A L +  +   +   + + 
Sbjct: 282 IGALLAIFAVSLMFWAVFKQN 302


>gi|239833374|ref|ZP_04681702.1| formate dehydrogenase, gamma subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239821437|gb|EEQ93006.1| formate dehydrogenase, gamma subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 235

 Score = 35.9 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
             LV +  S + +IL+  +  + +   YF     I+    ++  H+   V  + + I+  
Sbjct: 129 QKLVFWSMSLLIVILI--VSGLMIWNEYFGSYTSINQQRWALFVHSMAAVAAICVWIVHV 186

Query: 203 IATL-----------TVLDIGWSYHQWYSKLKMSKQEI--KDEIKQSYGNP 240
            A +             +  GW++      L+    E+  K + KQ  G P
Sbjct: 187 YAAIWVKGTIHAMTRGTVTGGWAWRHHRKWLR----ELTSKQKAKQGSGKP 233


>gi|169600765|ref|XP_001793805.1| hypothetical protein SNOG_03231 [Phaeosphaeria nodorum SN15]
 gi|160705509|gb|EAT89962.2| hypothetical protein SNOG_03231 [Phaeosphaeria nodorum SN15]
          Length = 845

 Score = 35.9 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)

Query: 112 IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS---------FVKIILVGTII 162
              +       +     R+  R  + R  S+  LV    S          +  +LVG + 
Sbjct: 703 FMWLAGFAAPFLVWGLSRMFPRVSLIRKISMP-LVFGCMSYVPPYSPMNILSWVLVGYVF 761

Query: 163 TISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKL 222
              +   Y       +    + L      +  +L+   + +    + D  W        L
Sbjct: 762 NKWIRNKYRGWWMQYNYITSAALDVGLA-LCNILLFFCVLLPGAAMPDY-WGTTWVAETL 819

Query: 223 KMSKQEIK 230
            MS+Q ++
Sbjct: 820 DMSQQAVR 827


>gi|293375190|ref|ZP_06621476.1| potassium uptake protein, TrkH family [Turicibacter sanguinis
           PC909]
 gi|292646170|gb|EFF64194.1| potassium uptake protein, TrkH family [Turicibacter sanguinis
           PC909]
          Length = 431

 Score = 35.9 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 5/169 (2%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
               S IL   + L    +    +  S +  L  SA+      ++ ++ + T    +A  
Sbjct: 15  LGFMSVILIGSVLLALPIAHMPGTYVSYIDALFTSASAV---TVTGLIAIETAEQFNAFG 71

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            ++   LL  + G+G   +  I +L +      + R+ L EG+    S++ +V  +KS +
Sbjct: 72  RLV-IALLIQIGGLGVTSVGAIFILVMQRKFGVYHRLLLMEGL-NFNSLSGVVRLVKSVL 129

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
           ++ LV  ++ + L+   F              +HA  +       IL  
Sbjct: 130 QLTLVIELVGMILSFFTFIQHYPFWEALGISAFHAIASFNNAGFDILGG 178


>gi|3047242|gb|AAC13683.1| melastatin [Mus musculus]
          Length = 542

 Score = 35.9 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|124024237|ref|YP_001018544.1| hypothetical protein P9303_25481 [Prochlorococcus marinus str. MIT
           9303]
 gi|123964523|gb|ABM79279.1| Hypothetical protein P9303_25481 [Prochlorococcus marinus str. MIT
           9303]
          Length = 509

 Score = 35.9 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 17/193 (8%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLL----------- 84
            F+     L+ +   +S  +YSV                 D    V+             
Sbjct: 19  AFALKALLLVDVTSLWSDELYSVGKSFQPSFRDLLAMLRNDTHPPVYYSLLWFWGQSVGQ 78

Query: 85  THLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN 144
             ++L     +  GL   +M      L Q   V     +      ++        Y +  
Sbjct: 79  NAVTLRLLSWLAYGLGGIVMVFQAGALAQARGVSRGRSLC-----LAALLAFCSPYPVRF 133

Query: 145 LVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIA 204
            +   KS+  ++L   +          ++          +LY     +  +     LF+ 
Sbjct: 134 AIE-GKSYALLVLFVGLAWWWRRRLLQSVESSTVFARDLLLYGITVCLAALTHFYGLFLF 192

Query: 205 TLTVLDIGWSYHQ 217
            +      W    
Sbjct: 193 AVAAAWDLWQQRW 205


>gi|74143427|dbj|BAE28794.1| unnamed protein product [Mus musculus]
          Length = 828

 Score = 35.9 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 328

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 329 G-RASDILSFAHKY 341


>gi|75762377|ref|ZP_00742251.1| Potassium uptake protein ktrB [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896350|ref|YP_002444761.1| sodium transporter family protein [Bacillus cereus G9842]
 gi|228899999|ref|ZP_04064235.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL
           4222]
 gi|228964377|ref|ZP_04125492.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|74490137|gb|EAO53479.1| Potassium uptake protein ktrB [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218543758|gb|ACK96152.1| sodium transporter family protein [Bacillus cereus G9842]
 gi|228795317|gb|EEM42808.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228859613|gb|EEN04037.1| H(+)-transporting two-sector ATPase [Bacillus thuringiensis IBL
           4222]
          Length = 449

 Score = 35.9 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 69/209 (33%), Gaps = 23/209 (11%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
             +   +LA ++ ++    P +    + +      A    +  +S     +  +S + + 
Sbjct: 16  LIVLFYLLAVVVSVILLSFPFV--TKAGVKWTFIDALFTSVSAVSVTGLSVVTISDTFTT 73

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
             I  L L +  G    +     V  +   K   +R  L        +++ LV  M+S +
Sbjct: 74  AGIIMLALILQLGGLGIMALGTFVWIITGKKIGLQRRRLIMADHNQGNLSGLVELMRSIL 133

Query: 154 KII----LVGTIITISLTENYFTMLDF-----------------ISANPHSILYHAFFTV 192
            +I    L+G I+  +    YF                            S++ +    +
Sbjct: 134 IVIISIELIGAILLGTRFLLYFPTWQEAYFHGFFAAVSATTNGGFDLTGQSLIPYKKDYI 193

Query: 193 RKVLIMILLFIATLTVLDIGWSYHQWYSK 221
            +++ M+L+ +  +    +      +  +
Sbjct: 194 VQMIHMLLIILGAIGFPVLMEVKQFFSKR 222


>gi|332236514|ref|XP_003267445.1| PREDICTED: transient receptor potential cation channel subfamily M
           member 3 isoform 1 [Nomascus leucogenys]
          Length = 574

 Score = 35.9 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +I+   P   ++ L Y++     PV+V  G 
Sbjct: 306 EVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGS 365

Query: 297 NLIAKKMRKIAYEH 310
              A  +    +++
Sbjct: 366 G-RASDILAFGHKY 378


>gi|62432665|gb|AAX82901.1| melanocortin-1 receptor [Gorilla gorilla]
          Length = 316

 Score = 35.9 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSL 89
           +    SS+L+ L +L         S+   L           +R +  I     L + L +
Sbjct: 120 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYRSIVTLPRARRAVAAIWVASVLFSTLFI 179

Query: 90  S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
           +          LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 180 AYYDHTAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HKGFGL 236

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 237 KGPVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 288

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 289 NAIIDPLIYAF----HSQELRRTLKEV 311


>gi|53726173|ref|YP_103939.1| preprotein translocase subunit SecF [Burkholderia mallei ATCC
           23344]
 gi|121601113|ref|YP_991651.1| preprotein translocase subunit SecF [Burkholderia mallei SAVP1]
 gi|124385393|ref|YP_001027147.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC
           10229]
 gi|126451077|ref|YP_001082096.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC
           10247]
 gi|167000540|ref|ZP_02266352.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20]
 gi|238562007|ref|ZP_00441101.2| protein-export membrane protein SecF [Burkholderia mallei GB8 horse
           4]
 gi|254178913|ref|ZP_04885567.1| protein-export membrane protein SecF [Burkholderia mallei ATCC
           10399]
 gi|254207994|ref|ZP_04914344.1| protein-export membrane protein SecF [Burkholderia mallei JHU]
 gi|254355864|ref|ZP_04972142.1| protein-export membrane protein SecF [Burkholderia mallei
           2002721280]
 gi|52429596|gb|AAU50189.1| protein-export membrane protein SecF [Burkholderia mallei ATCC
           23344]
 gi|121229923|gb|ABM52441.1| protein-export membrane protein SecF [Burkholderia mallei SAVP1]
 gi|124293413|gb|ABN02682.1| protein-export membrane protein SecF [Burkholderia mallei NCTC
           10229]
 gi|126243947|gb|ABO07040.1| protein-export membrane protein SecF [Burkholderia mallei NCTC
           10247]
 gi|147751888|gb|EDK58955.1| protein-export membrane protein SecF [Burkholderia mallei JHU]
 gi|148024839|gb|EDK83017.1| protein-export membrane protein SecF [Burkholderia mallei
           2002721280]
 gi|160694827|gb|EDP84835.1| protein-export membrane protein SecF [Burkholderia mallei ATCC
           10399]
 gi|238523481|gb|EEP86919.1| protein-export membrane protein SecF [Burkholderia mallei GB8 horse
           4]
 gi|243063594|gb|EES45780.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20]
          Length = 313

 Score = 35.9 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211
           +  +++G +I +S    +   +  I AN H  ++   FF   +    + +  A L VL  
Sbjct: 138 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 197

Query: 212 GWS---------YHQWYSKLKMSKQEI 229
             +            +  + KM+ QE+
Sbjct: 198 SVNESVVIFDRIRETFRRERKMTVQEV 224


>gi|315022977|gb|EFT35998.1| putative proton-dependent peptide transporter [Riemerella
           anatipestifer RA-YM]
 gi|325335332|gb|ADZ11606.1| putative proton dependent di-tripeptide transporter [Riemerella
           anatipestifer RA-GD]
          Length = 547

 Score = 35.9 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 74/201 (36%), Gaps = 18/201 (8%)

Query: 32  REASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSA 91
           ++  +F + L  +I    FF P I ++  +L+       +   +   +I ++  ++    
Sbjct: 100 KDMPMFYTSLGLIIIGNGFFKPSISTLLGNLYS--EEPYKANKDAGYNIFYMGINIGAFV 157

Query: 92  SRLVIPGLL-------LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLR-EGIKRIYSIN 143
             ++   +         F+  G+G +L   I  L   H+  +   +    EG  +I +I 
Sbjct: 158 CNIIAAFMRNKFGWGEAFITAGVGMFLGLIIFSLGRKHIL-NANILKPVQEGDTKISAI- 215

Query: 144 NLVNFMKSFVKIILVGTIITISLTENY--FTMLDFISANPHSILYHAFFTVRKVLIMILL 201
                 K F+  ILVG +  +     +   +   FI A    I+++    ++        
Sbjct: 216 ----LTKVFLPAILVGVLGWVIPGNIFGADSTDAFIFACIPVIIFYVSLYIKANKEDKAP 271

Query: 202 FIATLTVLDIGWSYHQWYSKL 222
             A L +  +   +   + + 
Sbjct: 272 IGALLAIFAVSLMFWAVFKQN 292


>gi|299802539|gb|ADJ52078.1| transient receptor potential melastatin family isoform 1 splice
           variant [Homo sapiens]
          Length = 1642

 Score = 35.9 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 262 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 321

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 322 G-RASDILSFAHKY 334


>gi|45657278|ref|YP_001364.1| phosphoglycerol transferase related protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600516|gb|AAS70001.1| phosphoglycerol transferase related protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 661

 Score = 35.9 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 10/182 (5%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
            ++IL   I +   F P +  + S   + L      ++   S  +   +  S ++   +I
Sbjct: 1   MATILLEKIRMSRKFPPNLKIILSFTILFLILLITYRI---SFTIVFFSKFSSTSLFEII 57

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
              L+ + F +    I   P   L+ + P    ++        + I+ +V F   +    
Sbjct: 58  LAFLVGIRFDLSVCAILIGPFWILSTIYP----LNRFRTYSLFWGISPIVLFF--WAASH 111

Query: 157 LVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
           L+G ++    T  +     FI   P   I++ AFF    +L +I   +  + +    + Y
Sbjct: 112 LIGDVLYFGETNKHLGYEGFIFLGPEFWIIFKAFFVGHTILAIISCLLIGILLPFTIYQY 171

Query: 216 HQ 217
            Q
Sbjct: 172 IQ 173


>gi|74201666|dbj|BAE28453.1| unnamed protein product [Mus musculus]
          Length = 542

 Score = 35.9 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|306817796|ref|ZP_07451537.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649445|gb|EFM46729.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 458

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 61/184 (33%), Gaps = 9/184 (4%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            +L ++I   +  L FF   G   +      LL    +  + +     ++     + A  
Sbjct: 240 LNLVAAIFISVFCLFFFLKDG-RRIWVWFMRLLPVPLREPVHEAGIRGWITLKGYIKAQA 298

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLV-----NF 148
           +V     +F+   IG+  +    +     +           G     +I  LV       
Sbjct: 299 MVAGVDAVFI--SIGAAFLGAGSMTIPLALLIFLASFIPIVGAVSTGAIAVLVILLDQGL 356

Query: 149 MKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
           +K+ + ++++  +     +     +L   + N H ++     TV      I+  +  + +
Sbjct: 357 VKAIIMLVVILAV-QQIESNVLQPLLMSNAVNIHPLVVLLAITVGGYFASIIGALLAVPI 415

Query: 209 LDIG 212
           +   
Sbjct: 416 VAFL 419


>gi|302546081|ref|ZP_07298423.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463699|gb|EFL26792.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 351

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 17/127 (13%)

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           V  + T+S+      +  F++      +Y         L   L     + +  IG     
Sbjct: 57  VALLFTVSMLATVAFIASFVTLPVDKYIYVFPIGHISALNFALGVTLGIALFAIGAGAVH 116

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNR---------------QKSIARSRIRHKMMEAT 262
           W   L MS  EI DE      +P +K +               ++ +AR+ +   +    
Sbjct: 117 WARTL-MSDVEIADERHPIEADPEVKAKVLDDFRAGAKESGFGRRKLARNTLFGALAL-V 174

Query: 263 SRATIII 269
             + +++
Sbjct: 175 PLSGVVL 181


>gi|48428439|sp|Q864K9|MSHR_GORGO RecName: Full=Melanocyte-stimulating hormone receptor; Short=MSH-R;
           AltName: Full=Melanocortin receptor 1; Short=MC1-R
 gi|30420770|gb|AAP30962.1| melanocortin-1 receptor [Gorilla gorilla]
          Length = 316

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASAT---QRKLEDISHIVFLLTHLSL 89
           +    SS+L+ L +L         S+   L           +R +  I     L + L +
Sbjct: 120 DVITCSSMLSSLCFLGAIAVDRYISIFYALRYRSIVTLPRARRAVAAIWVASVLFSTLFI 179

Query: 90  S-------ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI 142
           +          LV+  L + ++  +    +      +   +    KR        + + +
Sbjct: 180 AYYDHTAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPV---HKGFGL 236

Query: 143 NNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
              V         IL+G  I       +F  L  I   P        F    + + +++ 
Sbjct: 237 KGPVTL------TILLG--IFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIIC 288

Query: 203 IATLTVLDIGWSYHQWYSKLKMSKQEI 229
            A +  L   +       +L+ + +E+
Sbjct: 289 NAIIDPLIYAF----HSQELRRTLKEV 311


>gi|302873873|ref|YP_003842506.1| hypothetical protein Clocel_0976 [Clostridium cellulovorans 743B]
 gi|307689880|ref|ZP_07632326.1| hypothetical protein Ccel74_17094 [Clostridium cellulovorans 743B]
 gi|302576730|gb|ADL50742.1| hypothetical protein Clocel_0976 [Clostridium cellulovorans 743B]
          Length = 279

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVN-------- 147
           IP L++  + GI    +     ++   V    KR+   +  K  +S N LV         
Sbjct: 9   IPILIVAYIIGILLKHLSIGFGISWTWVANKIKRIFPFK-AKLFFSKNKLVTKDIKVSAK 67

Query: 148 FMKSFVKII 156
           ++KS  K I
Sbjct: 68  YVKSLGKFI 76


>gi|238026271|ref|YP_002910502.1| preprotein translocase subunit SecF [Burkholderia glumae BGR1]
 gi|237875465|gb|ACR27798.1| Protein export protein SecF [Burkholderia glumae BGR1]
          Length = 316

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211
           +  +++G +I +S    +   +  I AN H  ++   FF   +    + +  A L VL  
Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200

Query: 212 GWS---------YHQWYSKLKMSKQEI 229
             +            +  + +M+ QE+
Sbjct: 201 SVNESVVIFDRIRETFRRERRMTVQEV 227


>gi|194468303|ref|ZP_03074289.1| cytochrome d ubiquinol oxidase, subunit II [Lactobacillus reuteri
           100-23]
 gi|194453156|gb|EDX42054.1| cytochrome d ubiquinol oxidase, subunit II [Lactobacillus reuteri
           100-23]
          Length = 338

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 37  FSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI 96
           + S++  +  LL  +  GI    + + +      Q +  + +  ++ + +       L++
Sbjct: 159 WLSVVGGIALLLLTYLHGI----NYIALKTTGPVQERARNYAEFLYWILYAGEVVFALLL 214

Query: 97  PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKII 156
             +  FM       +I  + +++ + +                ++ + LV F+ S +   
Sbjct: 215 IFMTDFMAVHPVGTIIMLVLIVSFSVL-----------AQVETFAGHELVAFISSGL--T 261

Query: 157 LVGTIITISLTENYFTMLDFISANPHSILYH---AFFTVRKVLIMILLFIATLTVLDIGW 213
           LV  ++ I +   +  +L    +  +SIL     +      V+ +    +    +    W
Sbjct: 262 LVSLVVLIFI-GLFPRVLISSISPKYSILIQNASSTEYTLTVMTIATCCLLPFVLAYTIW 320

Query: 214 SYHQWYSKLKM 224
           +Y  +  ++ M
Sbjct: 321 AYWIFRKRIAM 331


>gi|82751434|ref|YP_417175.1| phage-like protein [Staphylococcus aureus RF122]
 gi|82656965|emb|CAI81402.1| hypothetical phage-related protein [Staphylococcus aureus RF122]
          Length = 1154

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 69/201 (34%), Gaps = 15/201 (7%)

Query: 27  NAPISREASLFSSILA----CLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVF 82
               S+    F S +      ++ L+   + G+ +  + +  + ++  +  +     I  
Sbjct: 533 QVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIAN 592

Query: 83  LLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP--SFKRVSLREGIKRIY 140
           L      +A  + +   L+     + + ++  I  L +  ++      +  L      I 
Sbjct: 593 LFEAHPATAQLVGVIITLVGAFRFLIAPILATIDFLGVFGIRLFALVSKFGLLRAGLTI- 651

Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
            +      +K  +KII V       + +  F  +  I      ++         + I+I 
Sbjct: 652 -LKGAFMLLKGPLKIISV-------IFQLLFGKIGLIRNAVTGLVTVFGILGGPITIVIG 703

Query: 201 LFIATLTVLDIGWSYHQWYSK 221
           +  A + +  + W+ ++ +  
Sbjct: 704 VIAALIAIFVLLWNKNEGFRN 724


>gi|268555248|ref|XP_002635612.1| C. briggsae CBR-SRAB-16 protein [Caenorhabditis briggsae]
 gi|187022274|emb|CAP38518.1| CBR-SRAB-16 protein [Caenorhabditis briggsae AF16]
          Length = 324

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 41  LACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLL 100
           L C++ L   F  G  +          +A +      S   + L          +IP  +
Sbjct: 139 LGCMLILGQIFMGGATTFAIFYKFDFQNAQEFCTGSQSSDPYFL----------IIPEAV 188

Query: 101 LFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGT 160
             +   +     Q   ++++N         +      +I    N+VN +++F K   +  
Sbjct: 189 AILSNVLA--FFQFGRLMSINRKIRVGSSSNNLSQKYQIEENLNVVNILRAFTKCDFIFI 246

Query: 161 IITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
           +I  ++   +  +   + +  +  L+   +          + + +L +    + + +   
Sbjct: 247 LIYFTMGIPFHLIGKHMDSAEYYALFEVIY---------FVPLYSLIMPAYIYRFSRKQR 297

Query: 221 KLKMSKQEIK 230
             +M++ E K
Sbjct: 298 DERMTRMERK 307


>gi|315169309|gb|EFU13326.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1341]
          Length = 683

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A    + +E    +   + +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLIFVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQAFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|315148183|gb|EFT92199.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4244]
          Length = 687

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 65  LLASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVK 124
             A    + +E    +   + +L++ A  +    ++L ++  I   LI   P++ L    
Sbjct: 241 YFAQDGAKTMEKAFGVGVGVVNLAVLAVPVTYINIMLNVIQIIVDLLIFVFPIIALVSFF 300

Query: 125 PSFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTIITISLTENYF--TMLDFISANPH 182
           P  + +              +  F KS + I+ +  +  I L+  ++   ++D       
Sbjct: 301 PRCQMM--------------MFKFFKSLIGILFLPVVFGIFLSVLFWVNKLIDQAFLGLM 346

Query: 183 SILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLK 223
             +  +   V    + +L  +    ++ I      W S+ K
Sbjct: 347 DKVSSSLLMVMSGGVFLLGTLIVTALVKIILYRKIWKSRYK 387


>gi|299802537|gb|ADJ52077.1| transient receptor potential melastatin family isoform 1 splice
           variant [Homo sapiens]
          Length = 1625

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 245 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 304

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 305 G-RASDILSFAHKY 317


>gi|291440117|ref|ZP_06579507.1| Rieske iron-sulfur protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343012|gb|EFE69968.1| Rieske iron-sulfur protein [Streptomyces ghanaensis ATCC 14672]
          Length = 352

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           V  + T+S+      +  F++     I+Y         L + L     + +  IG     
Sbjct: 58  VALLFTVSMLATIGFIASFVAIPVDKIVYIFPLGHIGALNLALGVTLGIALFAIGAGAVH 117

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQ----KSIARSRIRHK 257
           W   L MS +E+ DE       P ++ +     +  A+     +
Sbjct: 118 WARTL-MSDEELTDERHPIEAPPEVRTKVMDDFRQGAKESAIGR 160


>gi|239629012|ref|ZP_04672043.1| conserved membrane-spanning protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519158|gb|EEQ59024.1| conserved membrane-spanning protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 606

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 21/170 (12%)

Query: 47  LLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL-SLSASRLVIPGLLLFMMF 105
           L+F+ +    +V S    L A      L  +      LT L     +  V    +   + 
Sbjct: 346 LIFWGTWLFSAVVSWQFFLPAIGISTALFPVQSKQGTLTWLFPQKMTNFVWVWAIFNAIV 405

Query: 106 GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN-NLVNFMKSFVKIILVGTIIT- 163
           G+  + +      + N V P             ++ I  +    +KS +    V      
Sbjct: 406 GLVLFWLSYRFNGSKNGVTPK------------MWGIKTSGKELLKSLLLTFTVCACFFS 453

Query: 164 ISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           +    NYF ++DF       I   A    + + I+  +  A +       
Sbjct: 454 VVFLANYFFVVDF------RIWVLAIKVFKPIHIIYAVTYAVMFFPYYFM 497


>gi|228940659|ref|ZP_04103224.1| Amino acid transporter [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973578|ref|ZP_04134161.1| Amino acid transporter [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980136|ref|ZP_04140451.1| Amino acid transporter [Bacillus thuringiensis Bt407]
 gi|228779618|gb|EEM27870.1| Amino acid transporter [Bacillus thuringiensis Bt407]
 gi|228786165|gb|EEM34161.1| Amino acid transporter [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819038|gb|EEM65098.1| Amino acid transporter [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941292|gb|AEA17188.1| amino acid permease [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 460

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSD-LHVLLASATQRKLEDISHIVFLLTHLSLSA 91
                + +   L+  +F F    YS++ D L     S+  ++L+      ++   L+   
Sbjct: 301 SVGAIAGLTTVLLVAMFAFVRVSYSMSRDGLLPKRLSSVHKRLQTPFFNTWITGILAALL 360

Query: 92  SRLVIPGLL--LFMMFGIGSYLIQRIPVLNLNHVKPSFKR--VSLREGIKRIYSINNLVN 147
           + LV   LL  L  M  I +++   I V+ L    P  KR   +       I SI + + 
Sbjct: 361 AGLVDLNLLANLVNMGTITAFVFVSIAVIVLRKTHPDMKRPFRAPLVPFLPIVSIVSCIY 420

Query: 148 FMKSFVKIILVGTIITISL 166
              +  K+ L+  +  I +
Sbjct: 421 LALNLSKLTLISFVAWIII 439


>gi|215416002|dbj|BAG85193.1| melanocortin-1 receptor [Mus platythrix]
          Length = 315

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 69/194 (35%), Gaps = 14/194 (7%)

Query: 36  LFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLV 95
            F  ++A   Y+  F++   +S+ +   V  A      +  +S  +F+  +   +    +
Sbjct: 131 SFLGVIAIDRYISIFYALRYHSIVTLPRVRWAVVGIWMVSTVSSTLFITYYKHTAVLLCL 190

Query: 96  IPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
           +   L   M  +   L   +      H +       + +  KR + I      +K    +
Sbjct: 191 VTFFL--AMLALMVILYTHMFTRAYQHAQ------GIAQLHKRQWPIRQGF-CLKGAATL 241

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
            ++  I  +     +F  L  I   P        F    + +++++  + +  L   +  
Sbjct: 242 TILLGIFFLC-WGPFFLHLLLIVLCPQHPTCSCIFKNFNLFLILIILSSIVDPLIYAFR- 299

Query: 216 HQWYSKLKMSKQEI 229
                +L+M+ +E+
Sbjct: 300 ---SQELRMTLKEV 310


>gi|83719393|ref|YP_441822.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           E264]
 gi|167580647|ref|ZP_02373521.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           TXDOH]
 gi|167618751|ref|ZP_02387382.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           Bt4]
 gi|257137991|ref|ZP_05586253.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           E264]
 gi|83653218|gb|ABC37281.1| protein-export membrane protein SecF [Burkholderia thailandensis
           E264]
          Length = 316

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211
           +  +++G +I +S    +   +  I AN H  ++   FF   +    + +  A L VL  
Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200

Query: 212 GWS---------YHQWYSKLKMSKQEI 229
             +            +  + KM+ QE+
Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227


>gi|331085829|ref|ZP_08334912.1| hypothetical protein HMPREF0987_01215 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406752|gb|EGG86257.1| hypothetical protein HMPREF0987_01215 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 699

 Score = 35.9 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGI-------KRIYSINNLVNFMKSFVKI 155
           M+  I +  +    + N+      F+  S   G+       K+            S  K 
Sbjct: 59  MIMMIFALAVLGCLIFNIYAAGLFFRTKSRETGVFLALGMTKKRLKKELYKELFLSLGKG 118

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSY 215
           I+ G ++  +   +   +   +      IL    F+   + I +     T+ +L    + 
Sbjct: 119 IVFGIVLGAA--ASVGIIWVLLHTFLKDILERRMFSAAGLGISLFFAAVTVLILFFMAAR 176

Query: 216 HQWYSKLKMSKQEIKDEIKQSY 237
           +   + L     +I +E K++ 
Sbjct: 177 YMRRTNLM----DILNEEKKNE 194


>gi|49484371|ref|YP_041595.1| hypothetical protein SAR2235 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257426287|ref|ZP_05602702.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428945|ref|ZP_05605339.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431555|ref|ZP_05607928.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434263|ref|ZP_05610613.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437176|ref|ZP_05613216.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M876]
 gi|282904817|ref|ZP_06312691.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus C160]
 gi|282906493|ref|ZP_06314344.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282911713|ref|ZP_06319512.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914997|ref|ZP_06322777.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M899]
 gi|282920326|ref|ZP_06328050.1| hypothetical protein SASG_02567 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925537|ref|ZP_06333191.1| hypothetical protein SARG_02371 [Staphylococcus aureus subsp.
           aureus C101]
 gi|293509064|ref|ZP_06667851.1| hypothetical protein SCAG_02516 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510980|ref|ZP_06669679.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M809]
 gi|293547582|ref|ZP_06672257.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428736|ref|ZP_06821362.1| hypothetical protein SIAG_02686 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|49242500|emb|CAG41216.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257270992|gb|EEV03165.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274287|gb|EEV05804.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277796|gb|EEV08466.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280902|gb|EEV11047.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283569|gb|EEV13696.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M876]
 gi|282312938|gb|EFB43339.1| hypothetical protein SARG_02371 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316186|gb|EFB46567.1| hypothetical protein SASG_02567 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321200|gb|EFB51531.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M899]
 gi|282324478|gb|EFB54791.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282330443|gb|EFB59961.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282594850|gb|EFB99827.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus C160]
 gi|290919702|gb|EFD96775.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094768|gb|EFE25040.1| hypothetical protein SCAG_02516 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466265|gb|EFF08792.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus M809]
 gi|295127406|gb|EFG57046.1| hypothetical protein SIAG_02686 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|312437434|gb|ADQ76505.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315193318|gb|EFU23716.1| hypothetical protein CGSSa00_02376 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 363

 Score = 35.9 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 14/211 (6%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +GN   S    L   +   +I +L   +  +Y + S +  ++ ++ Q    D +H+V
Sbjct: 109 AFKKGNYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLV 165

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
            +          +V+    +     +         + +         +  L  G K + +
Sbjct: 166 GIAITTQSIIIIVVLLIKAIITWLLLIPIF---NFMTSFVESTNDKVKTHLANGFKAMKN 222

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199
                   K+F K  +   ++ + +      +   IS N  S+       + +V  +I I
Sbjct: 223 GQ------KTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITI 276

Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +LF+    V+ +G   +      K++K ++K
Sbjct: 277 ILFVVIHAVILMGIVQYYLKRGQKITKDKVK 307


>gi|302380536|ref|ZP_07269001.1| rod shape-determining protein RodA [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233817|ref|ZP_07320471.1| rod shape-determining protein RodA [Finegoldia magna BVS033A4]
 gi|302311479|gb|EFK93495.1| rod shape-determining protein RodA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495251|gb|EFL55003.1| rod shape-determining protein RodA [Finegoldia magna BVS033A4]
          Length = 367

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 4/193 (2%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+   ++  LI L    S           +         L  IS    ++  L++    
Sbjct: 18  ISVVILVIYGLIVLYSAGSSLSNHYFRKQIIATIIGIIIVLFIISLDNHIIKKLNIPMYI 77

Query: 94  LVIPGLLLFMMFGIGS-YLIQRIPVLNLNHVKP-SFKRVSLREGIKRIY-SINNLVNFMK 150
           +    L+L + FG+G  +  +        + +P    ++ L   +  I  S  N +N  K
Sbjct: 78  ICNVLLVLVLFFGVGDEWGARSWFKFGPINFQPSEIMKIVLIISLANIIESNKNSLNNPK 137

Query: 151 SFVKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
           + +KI++   I + + L +         +     +L+ A    + ++  I+L I +L  L
Sbjct: 138 TLLKILIFAFIPVALILKQPDAGTAMVYTFIIIVMLFTAGIDWKYLISAIILGIVSLPFL 197

Query: 210 DIGWSYHQWYSKL 222
            +     Q    L
Sbjct: 198 YLRLDQFQRDRIL 210


>gi|229552874|ref|ZP_04441599.1| membrane protein [Lactobacillus rhamnosus LMS2-1]
 gi|258540515|ref|YP_003175014.1| membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|229313743|gb|EEN79716.1| membrane protein [Lactobacillus rhamnosus LMS2-1]
 gi|257152191|emb|CAR91163.1| Conserved membrane protein [Lactobacillus rhamnosus Lc 705]
          Length = 276

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/193 (8%), Positives = 64/193 (33%), Gaps = 17/193 (8%)

Query: 46  YLLFFFSPGIYSVTSDLHVLL-ASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLF 102
           +    +   +  V  ++   L     Q+++ D         L  L      +++ G +  
Sbjct: 81  WAYALYGALLAGVFEEVGRFLGFKFIQKRIPDKINDPETPFLYGLGHGGLEMILVGSMTV 140

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156
           +   + + LI    +  +    P+  R ++   +K++  ++      +L+  + +    I
Sbjct: 141 LSNYLFAMLINSGSIEKVLSQTPASSRSAITAVVKQLTGMSAWTVSLSLLERIMALAVQI 200

Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--------YHAFFTVRKVLIMILLFIATLTV 208
            +  ++ + + +        +    H+ +          A     +  +++   +  + +
Sbjct: 201 ALSVVVWLLIVKRKQWFWLLVPIGLHAFIDFPAALTQVGALSVTVEEFLLVGQSLLIVGL 260

Query: 209 LDIGWSYHQWYSK 221
           +   W       +
Sbjct: 261 VYWLWQRTMRNRQ 273


>gi|199598523|ref|ZP_03211940.1| Predicted membrane protein [Lactobacillus rhamnosus HN001]
 gi|199590565|gb|EDY98654.1| Predicted membrane protein [Lactobacillus rhamnosus HN001]
          Length = 276

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 64/193 (33%), Gaps = 17/193 (8%)

Query: 46  YLLFFFSPGIYSVTSDLHVLL-ASATQRKLED--ISHIVFLLTHLSLSASRLVIPGLLLF 102
           +    +   +  V  ++   L     Q+++ D         L  L      +++ G +  
Sbjct: 81  WAYALYGALLAGVFEEVGRFLGFKFIQKRIPDKINDPETPFLYGLGHGGLEMILVGSMTV 140

Query: 103 MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSIN------NLVNFMKSFVKII 156
           +   + + LI    +  +    P+  R ++   +K++  ++      +L+  + +    I
Sbjct: 141 LSNYLFAMLINSGSIEKVLSQTPASSRSAITAVVKQLTGMSAWTVSLSLLERIMALAVQI 200

Query: 157 LVGTIITISLTENYFTMLDFISANPHSIL--------YHAFFTVRKVLIMILLFIATLTV 208
            +  ++ + + +        +    H+ +          A     +  I++   +  + +
Sbjct: 201 ALSVVVWLLIVKRKQWFWLLVPIGLHAFIDFPAALAQVGALSLTVEEFILVGQSVLIVGL 260

Query: 209 LDIGWSYHQWYSK 221
           +   W       +
Sbjct: 261 VYWLWQRTMRNRQ 273


>gi|169824414|ref|YP_001692025.1| cell division protein RodA-like protein [Finegoldia magna ATCC
           29328]
 gi|167831219|dbj|BAG08135.1| cell division protein RodA homolog [Finegoldia magna ATCC 29328]
          Length = 367

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 4/193 (2%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S+   ++  LI L    S           +         L  IS    ++  L++    
Sbjct: 18  ISVVILVIYGLIVLYSAGSSLSNHYFRKQIIATIIGIIIVLFIISLDNHIIKKLNIPMYI 77

Query: 94  LVIPGLLLFMMFGIGS-YLIQRIPVLNLNHVKP-SFKRVSLREGIKRIY-SINNLVNFMK 150
           +    L+L + FG+G  +  +        + +P    ++ L   +  I  S  N +N  K
Sbjct: 78  ICNVLLVLVLFFGVGDEWGARSWFKFGPINFQPSEIMKIVLIISLANIIESNKNSLNNPK 137

Query: 151 SFVKIILVGTI-ITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVL 209
           + +KI++   I + + L +         +     +L+ A    + ++  I+L I +L  L
Sbjct: 138 TLLKILIFAFIPVALILKQPDAGTAMVYTFIIIVMLFTAGIDWKYLIGAIILGIVSLPFL 197

Query: 210 DIGWSYHQWYSKL 222
            +     Q    L
Sbjct: 198 YLRLDQFQRDRIL 210


>gi|94538366|ref|NP_002411.3| transient receptor potential cation channel subfamily M member 1
           [Homo sapiens]
 gi|182701419|sp|Q7Z4N2|TRPM1_HUMAN RecName: Full=Transient receptor potential cation channel subfamily
           M member 1; AltName: Full=Long transient receptor
           potential channel 1; Short=LTrpC1; AltName:
           Full=Melastatin-1
 gi|162319236|gb|AAI56070.1| Transient receptor potential cation channel, subfamily M, member 1
           [synthetic construct]
          Length = 1603

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y+Q E   PV++  G 
Sbjct: 223 EVKLRRLLEKHISLQKINTRLGQGVPLVGLVVEGGPNVVSIVLEYLQEEPPIPVVICDGS 282

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 283 G-RASDILSFAHKY 295


>gi|54887440|gb|AAH85168.1| Trpm1 protein [Mus musculus]
          Length = 426

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 136 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 195

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 196 G-RASDILSFAHKY 208


>gi|47214200|emb|CAG00828.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2135

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 246 QKSIAR----SRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIA 300
           ++ + +     RI  ++ +      +I    P      L Y+Q     PV+V +G    A
Sbjct: 355 RRQLEKHINLQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTGRAA 414


>gi|307706262|ref|ZP_07643076.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Streptococcus mitis SK321]
 gi|307618353|gb|EFN97506.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Streptococcus mitis SK321]
          Length = 524

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 3/207 (1%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
           E    S +L  +    +  SP I+   S       +     L  + H   L + L     
Sbjct: 128 ELLSVSFVLTLITISSYLLSPSIFLFLSLFASFFLNLVPLILLILYH-KELKSKLKYQRR 186

Query: 93  RLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINN-LVNFMKS 151
            L I  L+L + +       +   V+NL         ++       I S+   +V    S
Sbjct: 187 NLWILALILPLSYFFLYINTRGAGVMNLVWYLEIIGILAFLHLKTIINSLQKKVVELKLS 246

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
           ++K      ++ + L    F +          +L             ++    +  +LD 
Sbjct: 247 YIKAFSRLFLLIMFLLVGIFIIFHLDLNTSFLVLNIMLLLFGICSEELIRLFRSAEMLDA 306

Query: 212 G-WSYHQWYSKLKMSKQEIKDEIKQSY 237
             +    +  + +M K  + +E  +  
Sbjct: 307 RDYVKVLFLKRNRMVKSLLANEDTEQQ 333


>gi|284802794|ref|YP_003414659.1| hypothetical protein LM5578_2551 [Listeria monocytogenes 08-5578]
 gi|284995936|ref|YP_003417704.1| hypothetical protein LM5923_2501 [Listeria monocytogenes 08-5923]
 gi|284058356|gb|ADB69297.1| hypothetical protein LM5578_2551 [Listeria monocytogenes 08-5578]
 gi|284061403|gb|ADB72342.1| hypothetical protein LM5923_2501 [Listeria monocytogenes 08-5923]
          Length = 650

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 35  SLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRL 94
             FS + A   +LL             L  ++     R+L   +   F+L  + L     
Sbjct: 172 GTFSFMSAGTSFLLLSLGGIALGAVLSLLKIMLMRGLRQLGIENMTSFMLMEILLPFLIF 231

Query: 95  VIPGLLLF--MMFGIGSYLIQRIPVLNLNHVKPSFKRVSLRE---GIKRIYSINNLVNFM 149
           ++   +    ++  +   ++      +   + P   +++L         I+S+N LV   
Sbjct: 232 MVAEKVGVNGILAVVSGGMVHS---FSYKGLNPEIAQLNLLSKNTWSVIIFSLNGLV--- 285

Query: 150 KSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLF 202
                 IL+GT +   L   +             I+   F  +    + IL F
Sbjct: 286 -----FILLGTQLPQILMTIWQDANIQKGMLFVYIIGITFLLLGLRFLWILFF 333


>gi|239931748|ref|ZP_04688701.1| Rieske iron-sulfur protein [Streptomyces ghanaensis ATCC 14672]
          Length = 339

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 158 VGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
           V  + T+S+      +  F++     I+Y         L + L     + +  IG     
Sbjct: 45  VALLFTVSMLATIGFIASFVAIPVDKIVYIFPLGHIGALNLALGVTLGIALFAIGAGAVH 104

Query: 218 WYSKLKMSKQEIKDEIKQSYGNPIIKNRQ----KSIARSRIRHK 257
           W   L MS +E+ DE       P ++ +     +  A+     +
Sbjct: 105 WARTL-MSDEELTDERHPIEAPPEVRTKVMDDFRQGAKESAIGR 147


>gi|149617148|ref|XP_001519932.1| PREDICTED: similar to transient receptor potential cation channel,
           subfamily M, member 7, partial [Ornithorhynchus
           anatinus]
          Length = 544

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 19/93 (20%)

Query: 247 KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQNLIAKKMRK 305
           K+I + RI  ++ +      +I    P      L Y+Q     PV+V +G    A  +  
Sbjct: 267 KTINQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGTG-RAADILA 325

Query: 306 IAYEHNIPIFEEPSLARSLFKQVPINSAIPPVF 338
                             + KQ      +P   
Sbjct: 326 Y-----------------IHKQTEEGGNLPDGT 341


>gi|148236145|ref|NP_001087254.1| transient receptor potential cation channel subfamily M member 7
           [Ovis aries]
 gi|145202992|gb|ABP35923.1| transient receptor potential cation channel subfamily M member 7
           [Ovis aries]
          Length = 1866

 Score = 35.9 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K++ + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|315498839|ref|YP_004087643.1| membrane protein insertase, yidc/oxa1 family [Asticcacaulis
           excentricus CB 48]
 gi|315416851|gb|ADU13492.1| membrane protein insertase, YidC/Oxa1 family [Asticcacaulis
           excentricus CB 48]
          Length = 658

 Score = 35.9 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 173 MLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQW--YSKLKMSKQEIK 230
           M  F +     +L   F  V    + IL     + ++    ++  +   +K+KM + +++
Sbjct: 359 MFWFFTRPMFFVLDFLFKYVGNFGLAILGLTVLVKLIFFPLAHKSYESMTKMKMLQPQVE 418

Query: 231 DEIKQSYGNPIIKNRQKSIARSRIRHKMMEAT 262
           +  K+  GNP        +    +     E  
Sbjct: 419 ELKKKHEGNPQ------QMQIEMMGLYQKEKV 444


>gi|325462308|gb|ADZ14492.1| NADH dehydrogenase subunit 2 [Hoplodactylus sp. Southern Forest]
          Length = 346

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 26/236 (11%)

Query: 24  NEGNAPISR-EASLFSSILACLIYLLFFFSPGIYSVTSDLH--VLLASATQRKLEDISHI 80
             G   IS+      + +L   + +    +P  + +   L    LL +      + ++  
Sbjct: 80  KTGQWDISQLSLPEGTVLLTLALAMKLGLAPLHFWLPETLQGTTLLTATLISTWQKLAPS 139

Query: 81  VFLLTHLSLSASRLVIPGLLLFMMFG--------------IGSYLIQRIPVLNLNHVKPS 126
             LL  ++    + ++   L   + G                S +     +     + P 
Sbjct: 140 ALLLMTINNLNQQTLMTLGLFSAVLGGWLGLNQTQTRKIMAFSSIAHMGWMFMALSMNPK 199

Query: 127 FKRVSLREGI---KRIYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHS 183
              ++L   +     ++S    V   K+ + +          LT + FT++      P +
Sbjct: 200 LALITLITYLILTTAMFSALT-VTSSKTLLDLGTTWPQTPTLLTTSMFTLMSLGGLPPLT 258

Query: 184 ILYHAFFTVRKVLIMILLFIATLTVL-----DIGWSYHQWYSKLKMSKQEIKDEIK 234
                +  + +++   L  I+ L  L        +      + L M  +   +E K
Sbjct: 259 GFMPKWLILNELMTQNLSLISILMALSTLPSLFFYLRMSHMTTLTMPPKTTTNEHK 314


>gi|325568450|ref|ZP_08144817.1| ABC superfamily ATP binding cassette transporter, membrane protein
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158219|gb|EGC70372.1| ABC superfamily ATP binding cassette transporter, membrane protein
           [Enterococcus casseliflavus ATCC 12755]
          Length = 335

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 7/124 (5%)

Query: 90  SASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRV-SLREGIK---RIYSINNL 145
                V+P  L+ ++F  G        ++      PS   + S   G K   R +     
Sbjct: 47  QLYLFVLPAFLIILIFSYGP---MYGIIIAFKDYMPSLGILGSPWVGFKHFQRFFDSYYF 103

Query: 146 VNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIAT 205
              +K+ + I +   ++   L       L+ I   P   +          + ++++    
Sbjct: 104 WELIKNTLGISIYSLVVGFPLPIILALALNEIKDGPFKKITQTVTYAPNFIAVVVMVGMV 163

Query: 206 LTVL 209
           +  L
Sbjct: 164 IAFL 167


>gi|297479704|ref|XP_002690974.1| PREDICTED: transient receptor potential cation channel, subfamily
           M, member 7-like [Bos taurus]
 gi|296483137|gb|DAA25252.1| transient receptor potential cation channel, subfamily M, member
           7-like [Bos taurus]
          Length = 1866

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K++ + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|297589785|ref|ZP_06948425.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MN8]
 gi|297576913|gb|EFH95627.1| lytic regulatory protein [Staphylococcus aureus subsp. aureus MN8]
          Length = 363

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 14/211 (6%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +GN   S    L   +   +I +L   +  +Y + S +  ++ ++ Q    D +H+V
Sbjct: 109 AFKKGNYLKS---VLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLV 165

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYS 141
            +          +V+    +     +         + +         +  L  G K + +
Sbjct: 166 GIAITTQSIIIIVVLLIKAIITWLLLIPIF---NFMTSFVESTNDKVKTHLANGFKAMKN 222

Query: 142 INNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV--LIMI 199
                   K+F K  +   ++ + +      +   IS N  S+       + +V  +I I
Sbjct: 223 GQ------KTFFKFFIGILLLNLVIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVITI 276

Query: 200 LLFIATLTVLDIGWSYHQWYSKLKMSKQEIK 230
           +LF+    V+ +G   +      K++K ++K
Sbjct: 277 ILFVVIHAVILMGIVQYYLKRGQKITKDKVK 307


>gi|329663922|ref|NP_001193095.1| transient receptor potential cation channel subfamily M member 7
           [Bos taurus]
          Length = 1866

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K++ + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|119507922|dbj|BAF42335.1| transient receptor potential cation channel, subfamily M, member 7
           [Ovis aries]
          Length = 1866

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            ++ R+   K++ + RI  ++ +      +I    P      L Y+Q     PV+V +G 
Sbjct: 259 EVRLRRELEKTVNQQRIHARIGQGVPVVALIFEGGPNVILTVLEYLQESPPVPVVVCEGT 318

Query: 297 NLIA 300
              A
Sbjct: 319 GRAA 322


>gi|291280405|ref|YP_003497240.1| hypothetical protein DEFDS_2034 [Deferribacter desulfuricans SSM1]
 gi|290755107|dbj|BAI81484.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 632

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 77  ISHIVFLLTHLSLSASRL-VIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREG 135
           I +++ LLT L +  S L VI  + +     +   +I  +  L    +KP+ K ++L   
Sbjct: 7   IENLLNLLTILMILVSLLSVIKYVSVIFFTLLILTMILFLLNLKYQFLKPNRKILTLLSF 66

Query: 136 IKR--IYSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVR 193
           +    I    N  N + S   I+++   + +   + Y   +  +  +         F + 
Sbjct: 67  LVSGVIVLKTNSNNLVLSLAHILIIFLCVKLLEYKKYRDYMQILVLSIFLTTASGLFNLS 126

Query: 194 KVLIMILLFIATLT-VLDIGWSYHQWYSKLKMSKQEIKD 231
            + ++ +L        L I  +++ +   + ++K EIK+
Sbjct: 127 MIYLVFILLSIVFGYFLAIFATFYDFQESIILNKSEIKE 165


>gi|168262733|ref|ZP_02684706.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205348441|gb|EDZ35072.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 475

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%)

Query: 40  ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
           ++A  I +   F  GIYS        +    +L    Q+    +  +       S+S   
Sbjct: 140 VVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRP 199

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            ++ G +  ++            +             +  EG+ R Y        +KS  
Sbjct: 200 GMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQY------EGLKSIF 253

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            + L+G ++   L       +  I+   +S++           I++ + +  +   D 
Sbjct: 254 IMPLIGVLVIGVLMSLLGQPVAAIN---NSMMNWLASLQEANPILLGIVVGAMCSFDF 308


>gi|52139056|gb|AAH82560.1| Trpm1 protein [Mus musculus]
          Length = 443

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 153 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 212

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 213 G-RASDILSFAHKY 225


>gi|70731490|ref|YP_261231.1| ABC transporter ATP-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68345789|gb|AAY93395.1| ABC transporter, ATP-binding protein, MsbA family [Pseudomonas
           fluorescens Pf-5]
          Length = 572

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 24/200 (12%)

Query: 31  SREASLFSSILACLIYL-----LFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLT 85
           SR+    S+ L  L        L        SV + L VL+     + L D   +    +
Sbjct: 11  SRDPQALSAALGWLYSFVRPHRLAIGGLLGLSVCASLLVLVQPWLTKLLIDDGLLARDFS 70

Query: 86  HLSLSASRLVIPGLLLFMMFGIGSYL---IQRIPVLNL-NHVKPSFKRVSLRE-GIKRIY 140
            L L A  +++ GLL  ++ G+  YL   +    +  L + +    +R+S    G +RI 
Sbjct: 71  RLVLIAGLMILAGLLGTLLSGVNRYLHTRLSGRILFALRDDLYRHLQRLSPSFYGQRRIG 130

Query: 141 SINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMIL 200
            + + ++           G +  I   + +     F + +    L  A   +  +   + 
Sbjct: 131 DLMSRLD-----------GDVAEI---QRFAVDSLFSAVSSVIGLVVALAMLLTLSWQLS 176

Query: 201 LFIATLTVLDIGWSYHQWYS 220
           L    L  LD+ W       
Sbjct: 177 LLALVLIPLDVLWLRWMRRK 196


>gi|16766553|ref|NP_462168.1| phosphotransferase system fructose-specific component IIB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|161616260|ref|YP_001590225.1| hypothetical protein SPAB_04065 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552096|ref|ZP_02345849.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168463521|ref|ZP_02697438.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197263992|ref|ZP_03164066.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|16421813|gb|AAL22127.1| putative phosphotransferase system fructose-specific component IIB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|161365624|gb|ABX69392.1| hypothetical protein SPAB_04065 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195633302|gb|EDX51716.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197242247|gb|EDY24867.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205323242|gb|EDZ11081.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|261248421|emb|CBG26258.1| PTS system fructose-specific EIIbc component [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|301159805|emb|CBW19324.1| PTS system fructose-specific EIIbc component [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312914281|dbj|BAJ38255.1| hypothetical protein STMDT12_C33120 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225941|gb|EFX50995.1| PTS system protein, tagatose-specific IIBC component [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131615|gb|ADX19045.1| putative phosphotransferase system fructose-specific component IIB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
          Length = 475

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%)

Query: 40  ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
           ++A  I +   F  GIYS        +    +L    Q+    +  +       S+S   
Sbjct: 140 VVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRP 199

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            ++ G +  ++            +             +  EG+ R Y        +KS  
Sbjct: 200 GMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQY------EGLKSIF 253

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            + L+G ++   L       +  I+   +S++           I++ + +  +   D 
Sbjct: 254 IMPLIGVLVIGVLMSLLGQPVAAIN---NSMMNWLASLQEANPILLGIVVGAMCSFDF 308


>gi|332798766|ref|YP_004460265.1| Na+/solute symporter [Tepidanaerobacter sp. Re1]
 gi|332696501|gb|AEE90958.1| Na+/solute symporter [Tepidanaerobacter sp. Re1]
          Length = 465

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 57/187 (30%), Gaps = 10/187 (5%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A  +GN          S I   L+ ++ FF   I      L  L +          + + 
Sbjct: 250 AAKDGNVAK-----TASIIGGVLLVIISFFPTIIGMGARALSDLDSGGNSFPWVVQNLMN 304

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR--VSLREGIKRI 139
            ++  + L+A    I      ++    S++++   +      +   ++  +++      I
Sbjct: 305 PVIGGIVLAAILSAIMSTADSLLTAATSHIVKDFWIETFQMDEIKDEKKLLNISRNFTFI 364

Query: 140 YSINNLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMI 199
             I  L   + + +   ++  +I      +    +  I                 ++  I
Sbjct: 365 IGILGL---LIALIMPGIIDALIYSYTMYSAGVFIPVIGGVLWESATREGALASLIIGSI 421

Query: 200 LLFIATL 206
           +     L
Sbjct: 422 VALWGIL 428


>gi|293553837|ref|ZP_06674452.1| pts system fructose-specific eiibbc component [Enterococcus faecium
           E1039]
 gi|291602043|gb|EFF32280.1| pts system fructose-specific eiibbc component [Enterococcus faecium
           E1039]
          Length = 487

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 60/173 (34%), Gaps = 4/173 (2%)

Query: 38  SSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASRLVI- 96
             +   ++  + F   GIYS   D     A+A   K    + +  ++  L+   +  +  
Sbjct: 144 FVVAGGVLIAISFAVWGIYSFDPDHAQYNATAAMVKAVGDAAMGMMVPVLAAYIAEGIAK 203

Query: 97  -PGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKI 155
            PGL++  + GI +       +  +     +   +   + +  I      ++ +K+    
Sbjct: 204 RPGLVVGFVGGIVAMNGGTGFLGGILAGFLAGYFILFLQKLLTILPKQ--LDGLKAIFLY 261

Query: 156 ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTV 208
            ++G      +       +  I+    S L     +   VL +I+  +    +
Sbjct: 262 PVIGVAFIGIVMSLLAGPMKAINEGMMSFLAGFEHSNPLVLGVIVGCMCAFDM 314


>gi|223041514|ref|ZP_03611716.1| tRNA-processing ribonuclease BN [Actinobacillus minor 202]
 gi|223017666|gb|EEF16075.1| tRNA-processing ribonuclease BN [Actinobacillus minor 202]
          Length = 284

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 18/205 (8%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S++  + S+I   ++ L+      I++V   L+ L     +R +     I FLL  + L 
Sbjct: 87  SKQMGIVSTIGLVVVALML-----IHNVDKALNGLWHEPRKRSIF----ISFLLYAVILV 137

Query: 91  ASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRI---YSINNLVN 147
            + LV    +    + +   L   +   +L     ++    L   +  +   +  N  V 
Sbjct: 138 LAPLVAGVSIAITSYIMSLSLFNEVATFSLATTLLNYTPFLLIWLLFTLIYKFVPNTTVK 197

Query: 148 FMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLT 207
           F K      L   I      + +  +    +   +  +Y A   +  +L+ I L    + 
Sbjct: 198 F-KHACAGALFAGIFFTLGKQAF--IWYITTFPSYQAIYGALAVLPIMLLWIHLSWQVVL 254

Query: 208 VLDIGWSYHQWYSKLKMSKQEIKDE 232
           +      +     +L+M KQE KDE
Sbjct: 255 LGG---QFAAVLKELEMIKQEKKDE 276


>gi|146181472|ref|XP_001022822.2| ABC transporter family protein [Tetrahymena thermophila]
 gi|146144171|gb|EAS02577.2| ABC transporter family protein [Tetrahymena thermophila SB210]
          Length = 1494

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 75/228 (32%), Gaps = 27/228 (11%)

Query: 8    DNKTEAPSSKKIEDALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHV--L 65
            ++K   PS  K E+   + +   S  A+ FS++    I+L+FF +       S + +   
Sbjct: 839  EDK--KPSEVKNEEVREQSSIKFSTLATYFSTM--GYIFLMFFLAFNFLMQGSQMLIDFW 894

Query: 66   LASATQRKLEDISHIVFLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKP 125
            L   T  +    ++I       + +   L+    L   +  + S+      +L+   +  
Sbjct: 895  LRDYTNHQSSFFNNINDTFDTFTKAFFFLI---FLNLGITALRSFFYCLCALLSSRRMFL 951

Query: 126  SFKRVSLREGIKRIYSINNLVNFMKSFVKIILVGTII--TISLTENYFTMLDFISANPHS 183
               + S+     + +  N +           ++  +     S+                 
Sbjct: 952  KLNK-SILFSKMKFFDTNPVGR---------IISRLADDVDSVDYYLPWQSQTFMEQLAY 1001

Query: 184  ILYHAFFTVRKVLIMILLFIATLTVLDIGWSYHQWYSKLKMSKQEIKD 231
             + +    + +   ++++ +     +           + + S +EIK 
Sbjct: 1002 SIGYPVGIIVQFPWIVIIILICFAFIYYV------QRQFRDSNREIKR 1043


>gi|108759425|ref|YP_633155.1| thiol:disulfide interchange protein DsbD [Myxococcus xanthus DK
           1622]
 gi|108463305|gb|ABF88490.1| thiol:disulfide interchange protein DsbD [Myxococcus xanthus DK
           1622]
          Length = 506

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 67/191 (35%), Gaps = 12/191 (6%)

Query: 22  ALNEGNAPISREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIV 81
           A   G A  S      + +    ++LL   +    S+     + L S+ Q KL  +    
Sbjct: 133 AAKTGQAFGSM-LGHPAVVTGLAVFLLLLAT----SMFGAFELALPSSFQTKLNAVGGAG 187

Query: 82  FLLTHLSLSASRLVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKR-VSLREGIKRIY 140
                L  S S  +       ++ G+ +++ +         +   +   + +   +  ++
Sbjct: 188 VAGAFLMGSVSGFLAAPCTGPVLTGLLAFVAKSANTTLGASLLFVYALGIGVPFFLIGVF 247

Query: 141 SIN-----NLVNFMKSFVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKV 195
           ++        + ++KS + I+LV  +    L + +    D +      +       +  +
Sbjct: 248 TVRLPRGGVWMEWVKSVLGIMLVA-LAFSYLKDAFPWARDVVKGLGLHVGRVPGAVIAAL 306

Query: 196 LIMILLFIATL 206
           L+ + + +  +
Sbjct: 307 LVAVGVALGAV 317


>gi|23098179|ref|NP_691645.1| hypothetical protein OB0724 [Oceanobacillus iheyensis HTE831]
 gi|22776404|dbj|BAC12680.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 390

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 12/185 (6%)

Query: 34  ASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
            S   +IL       FF +P        L+   A     +L      + +   +  + S 
Sbjct: 91  MSSLHTILIFGAVFYFFAAP-----IGGLNDSFAQRRAGQLGISFGSIRMWGSVGFALSS 145

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
           L++  +L     G   ++      + L  + P    +   +   +   +N++   +KS  
Sbjct: 146 LLVGEVLARFGIGYMVWVYLAFGTIALLTLIP----LKDVKADTKPVKLNDISKIIKSKP 201

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
            ++ +G I+ I++T     M D+  A   S L  +   V       ++  A +  L   W
Sbjct: 202 FLLFLGVILFITITHR---MNDYYMALYISELGGSEDLVGLAWFAGVISEAAVFALAAFW 258

Query: 214 SYHQW 218
                
Sbjct: 259 FRKFH 263


>gi|204928089|ref|ZP_03219289.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204322411|gb|EDZ07608.1| pts system fructose-specific eiibc component [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 475

 Score = 35.9 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%)

Query: 40  ILACLIYLLFFFSPGIYSV------TSDLHVLLASATQRKLEDISHIVFLLTHLSLSASR 93
           ++A  I +   F  GIYS        +    +L    Q+    +  +       S+S   
Sbjct: 140 VVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRP 199

Query: 94  LVIPGLLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFV 153
            ++ G +  ++            +             +  EG+ R Y        +KS  
Sbjct: 200 GMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQY------EGLKSIF 253

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            + L+G ++   L       +  I+   +S++           I++ + +  +   D 
Sbjct: 254 IMPLIGVLVIGVLMSLLGQPVAAIN---NSMMNWLASLQEANPILLGIVVGAMCSFDF 308


>gi|167564032|ref|ZP_02356948.1| preprotein translocase subunit SecF [Burkholderia oklahomensis
           EO147]
 gi|167571178|ref|ZP_02364052.1| preprotein translocase subunit SecF [Burkholderia oklahomensis
           C6786]
          Length = 316

 Score = 35.9 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211
           +  +++G +I +S    +   +  I AN H  ++   FF   +    + +  A L VL  
Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200

Query: 212 GWS---------YHQWYSKLKMSKQEI 229
             +            +  + KM+ QE+
Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227


>gi|53720480|ref|YP_109466.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           K96243]
 gi|76811120|ref|YP_334745.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           1710b]
 gi|126455336|ref|YP_001067602.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           1106a]
 gi|134280202|ref|ZP_01766913.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           305]
 gi|167721142|ref|ZP_02404378.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           DM98]
 gi|167740114|ref|ZP_02412888.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 14]
 gi|167817325|ref|ZP_02449005.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 91]
 gi|167825735|ref|ZP_02457206.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 9]
 gi|167847220|ref|ZP_02472728.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           B7210]
 gi|167895808|ref|ZP_02483210.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           7894]
 gi|167904197|ref|ZP_02491402.1| preprotein translocase subunit SecF [Burkholderia pseudomallei NCTC
           13177]
 gi|167912454|ref|ZP_02499545.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 112]
 gi|167920409|ref|ZP_02507500.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           BCC215]
 gi|217420444|ref|ZP_03451949.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           576]
 gi|226198408|ref|ZP_03793977.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813730|ref|YP_002898181.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           MSHR346]
 gi|242315899|ref|ZP_04814915.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1106b]
 gi|254180717|ref|ZP_04887315.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1655]
 gi|254194969|ref|ZP_04901399.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           S13]
 gi|254258479|ref|ZP_04949533.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1710a]
 gi|52210894|emb|CAH36882.1| putative protein-export membrane protein [Burkholderia pseudomallei
           K96243]
 gi|76580573|gb|ABA50048.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1710b]
 gi|126228978|gb|ABN92518.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1106a]
 gi|134248209|gb|EBA48292.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           305]
 gi|169651718|gb|EDS84411.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           S13]
 gi|184211256|gb|EDU08299.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1655]
 gi|217395856|gb|EEC35873.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           576]
 gi|225929591|gb|EEH25609.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505134|gb|ACQ97452.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           MSHR346]
 gi|242139138|gb|EES25540.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1106b]
 gi|254217168|gb|EET06552.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1710a]
          Length = 316

 Score = 35.9 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211
           +  +++G +I +S    +   +  I AN H  ++   FF   +    + +  A L VL  
Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200

Query: 212 GWS---------YHQWYSKLKMSKQEI 229
             +            +  + KM+ QE+
Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227


>gi|330508777|ref|YP_004385205.1| F420H2 dehydrogenase subunit M [Methanosaeta concilii GP-6]
 gi|328929585|gb|AEB69387.1| F420H2 dehydrogenase, subunit M [Methanosaeta concilii GP-6]
          Length = 500

 Score = 35.9 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 62/185 (33%), Gaps = 12/185 (6%)

Query: 45  IYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHL-SLSASRLVIPGLLLFM 103
             + FF    + S+   L  + A     +L D S    +LT L +     +  P LL  +
Sbjct: 157 AAIKFFIYTHVASLV-MLLAIFALYFTYQLPDGSRTFDMLTLLKATQNPEIFPPALLNII 215

Query: 104 MFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSI----------NNLVNFMKSFV 153
             G+    + ++P    +   P     +   G   + ++            +V  + S  
Sbjct: 216 FAGLLLGFLVKMPAFPFHTWLPDAHVEAPTAGSVVLAALLLKMGGYGLFRIIVPMLPSVD 275

Query: 154 KIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDIGW 213
           KI +    I   L+  Y   L     +   ++ ++  +    + +  + +  L++    +
Sbjct: 276 KIFVTIIAIIAVLSIVYGAFLALAQKDIKKLVAYSSVSHMGFVTLGAVALVPLSIQGAMF 335

Query: 214 SYHQW 218
                
Sbjct: 336 QQFSH 340


>gi|330810396|ref|YP_004354858.1| transporter membrane protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378504|gb|AEA69854.1| Putative transporter, membrane protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 433

 Score = 35.9 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 11/186 (5%)

Query: 31  SREASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLS 90
           S E    +S     + LL    PGI +V S L       +     +  + +  +  +SL 
Sbjct: 6   SAEGQAAASTQGRFVRLLKLLGPGIIAVLSWLGAGDLITSSVAGANYGYAMMWVLAVSLL 65

Query: 91  ASRLVIPGLLLFMMF-GIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFM 149
              L++  +  F +    G  ++Q    LN            L   +   Y I      +
Sbjct: 66  LRYLIVNIIARFQLCNNQGMTILQGYAQLNPFFAWFLLVYALLMGHLMNAYMIKGAGEAL 125

Query: 150 KSFVKI---ILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATL 206
              +KI   +L    + +++          +  N +S++      +  ++ +  L +A +
Sbjct: 126 AMLLKIDYPMLCSVAVVLAVW-------MLVGRNIYSMIEGVMKGLLAIMTLAFLALAVM 178

Query: 207 TVLDIG 212
           +  D+ 
Sbjct: 179 SGPDVA 184


>gi|330815586|ref|YP_004359291.1| Protein export protein SecF [Burkholderia gladioli BSR3]
 gi|327367979|gb|AEA59335.1| Protein export protein SecF [Burkholderia gladioli BSR3]
          Length = 316

 Score = 35.9 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 153 VKIILVGTIITISLTENYFTMLDFISANPHS-ILYHAFFTVRKVLIMILLFIATLTVLDI 211
           +  +++G +I +S    +   +  I AN H  ++   FF   +    + +  A L VL  
Sbjct: 141 LACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLSVLAAVLAVLGY 200

Query: 212 GWS---------YHQWYSKLKMSKQEI 229
             +            +  + KM+ QE+
Sbjct: 201 SVNESVVIFDRIRETFRRERKMTVQEV 227


>gi|306960158|ref|YP_003875572.1| NADH dehydrogenase subunit 4 [Physemacris variolosa]
 gi|291463876|gb|ADD97030.1| NADH dehydrogenase subunit 4 [Physemacris variolosa]
          Length = 440

 Score = 35.9 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 3/172 (1%)

Query: 40  ILACLIYLLFFFSPGIYSVTSDLHVL-LASATQRKLEDISHIVFLLTHLSLSASRLVIPG 98
           +L     + + F    + +  DL            L  +  +   L HL L  + +  P 
Sbjct: 150 LLLVFFKVYYMFGTLYFPLLFDLGSFYFLFYLFIILAFLVKMPMFLVHLWLPKAHVEAPI 209

Query: 99  LLLFMMFGIGSYLIQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKSFVKIILV 158
               ++ G+   L        +  +     + +       ++    ++       ++ L 
Sbjct: 210 SGSMILAGVLLSLGGYGIFRVMKIISFLGLKFNYIWVSISLFG--GVIVSFICLRQVDLK 267

Query: 159 GTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLD 210
             I   S+      +   ++ N           +   L    LF  ++ + D
Sbjct: 268 SLIAYSSVAHMSLVIGGLMTMNWWGCFGSLSLMIGHGLCSSGLFCLSVIIYD 319


>gi|326474240|gb|EGD98249.1| neutral amino acid permease [Trichophyton tonsurans CBS 112818]
          Length = 513

 Score = 35.9 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 65/189 (34%), Gaps = 7/189 (3%)

Query: 33  EASLFSSILACLIYLLFFFSPGIYSVTSDLHVLLASATQRKLEDISHIVFLLTHLSLSAS 92
                 + L+ L  L  FF+  I  + S +   + +   +   D +H       +     
Sbjct: 204 SIPRTFNTLSKLATLSAFFT-FISVLLSMIFAGIEAHPAKYNPDPNHRGPDGKLMGGEPI 262

Query: 93  RLVIPGLLLFMMFGIGSYL-IQRIPVLNLNHVKPSFKRVSLREGIKRIYSINNLVNFMKS 151
               P      + G+ ++L I    +  +       +  + ++  K ++++  +      
Sbjct: 263 VTAFPLPGTTFVAGMSAFLNISYTFIGQITLPSFIAEMRNPKDFSKALWAV-TIAE---- 317

Query: 152 FVKIILVGTIITISLTENYFTMLDFISANPHSILYHAFFTVRKVLIMILLFIATLTVLDI 211
            +   +VG I+ +     Y T   F S +       AF  +   LI + +  A+++   I
Sbjct: 318 IIVFSIVGAIVYVFTGTQYMTAPAFGSLSNEVYKKVAFSFMVPTLIFLGVLYASVSARFI 377

Query: 212 GWSYHQWYS 220
            + +     
Sbjct: 378 FFRFFDNTR 386


>gi|169881257|ref|NP_001034193.2| transient receptor potential cation channel subfamily M member 1
           isoform 2 [Mus musculus]
 gi|182701420|sp|Q2TV84|TRPM1_MOUSE RecName: Full=Transient receptor potential cation channel subfamily
           M member 1; AltName: Full=Long transient receptor
           potential channel 1; Short=LTrpC1; AltName:
           Full=Melastatin-1
 gi|295149302|gb|AAO43093.2| transient receptor potential cation channel subfamily M member 1
           long form [Mus musculus]
          Length = 1622

 Score = 35.9 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 241 IIKNRQ---KSIARSRIRHKMMEATSRATIII-TNPTHYALALRYIQTENDAPVLVAKGQ 296
            +K R+   K I+  +I  ++ +      +++   P   ++ L Y++ +   PV+V  G 
Sbjct: 269 EVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGS 328

Query: 297 NLIAKKMRKIAYEH 310
              A  +   A+++
Sbjct: 329 G-RASDILSFAHKY 341


>gi|255930835|ref|XP_002556974.1| Pc12g00720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|166989480|sp|A7KAN0|AT222_PENCW RecName: Full=Autophagy-related protein 22-2
 gi|129716025|gb|ABO31317.1| Atg22A-2p [Penicillium chrysogenum]
 gi|211581593|emb|CAP79699.1| Pc12g00720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 607

 Score = 35.9 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 56/152 (36%), Gaps = 14/152 (9%)

Query: 80  IVFLLTHLSLSASRLVIPGLLLFMMFGI--GSYLIQRIPVLNLNHVKPSFKRVS-----L 132
           ++  L+   L+     +P   + ++ GI  G++ +    +L      P    VS      
Sbjct: 295 MLLTLSKTKLAKVSATLPMRFVLLLVGIWWGAFTLVTRNLLKTRP-GPRLDTVSTKGTGR 353

Query: 133 REGIKRI--YSINNLVNFMKSFVKI--ILVGTIITISLTENYFTMLDFISANPHSILYHA 188
                R+  ++  +L   +K   K+  +L+  +    L++   T+         + L  +
Sbjct: 354 WRAWLRLVGFAWKSLWETVKVVSKLREVLIFLVAWFLLSDAMATVSGTAILFARTELKLS 413

Query: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQWYS 220
              +   L+ I   ++ +T   +     +++ 
Sbjct: 414 TPLIG--LLSITATLSGMTGAFLWPQVSRYFR 443


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.159    0.465 

Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,150,709,574
Number of Sequences: 14124377
Number of extensions: 358670422
Number of successful extensions: 1753358
Number of sequences better than 10.0: 6052
Number of HSP's better than 10.0 without gapping: 4008
Number of HSP's successfully gapped in prelim test: 4143
Number of HSP's that attempted gapping in prelim test: 1742084
Number of HSP's gapped (non-prelim): 9280
length of query: 354
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 214
effective length of database: 2,865,380,850
effective search space: 613191501900
effective search space used: 613191501900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 82 (36.0 bits)